Query 041894
Match_columns 219
No_of_seqs 121 out of 1254
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 20:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 3.3E-36 1.1E-40 262.9 18.4 182 4-205 26-224 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.7E-33 3E-37 241.3 13.6 179 21-219 7-212 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 7.8E-24 2.7E-28 193.2 8.5 121 36-157 124-252 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2.3E-23 7.9E-28 190.1 3.1 147 4-156 127-287 (1134)
5 2xpi_A Anaphase-promoting comp 99.7 1.6E-16 5.5E-21 139.5 17.5 201 3-206 338-565 (597)
6 2xpi_A Anaphase-promoting comp 99.7 2.3E-16 7.7E-21 138.5 15.2 198 4-206 272-490 (597)
7 3mkr_A Coatomer subunit epsilo 99.4 1.7E-11 5.7E-16 99.5 16.5 180 2-206 63-249 (291)
8 1w3b_A UDP-N-acetylglucosamine 99.4 3.1E-11 1.1E-15 100.5 18.5 198 5-206 136-354 (388)
9 1w3b_A UDP-N-acetylglucosamine 99.4 2.9E-11 9.8E-16 100.7 17.5 151 5-159 68-221 (388)
10 2y4t_A DNAJ homolog subfamily 99.4 3.2E-11 1.1E-15 101.9 17.0 180 3-186 25-238 (450)
11 2y4t_A DNAJ homolog subfamily 99.3 7.7E-11 2.6E-15 99.6 16.7 156 3-161 59-231 (450)
12 2vq2_A PILW, putative fimbrial 99.3 2.9E-10 9.8E-15 86.6 17.7 181 4-205 8-196 (225)
13 2ho1_A Type 4 fimbrial biogene 99.3 2.1E-10 7.1E-15 89.5 16.6 182 4-205 37-223 (252)
14 1b89_A Protein (clathrin heavy 99.3 6E-12 2E-16 107.2 8.0 182 2-204 59-254 (449)
15 1b89_A Protein (clathrin heavy 99.3 6.7E-13 2.3E-17 113.0 1.9 170 16-206 15-192 (449)
16 4eqf_A PEX5-related protein; a 99.2 1.1E-10 3.6E-15 96.3 13.7 200 4-206 65-296 (365)
17 2pl2_A Hypothetical conserved 99.2 2.5E-10 8.5E-15 88.3 14.7 183 1-206 1-200 (217)
18 1fch_A Peroxisomal targeting s 99.2 7.7E-10 2.6E-14 90.8 16.6 200 4-206 64-300 (368)
19 2q7f_A YRRB protein; TPR, prot 99.2 3.2E-10 1.1E-14 87.6 13.0 152 4-158 23-176 (243)
20 2ho1_A Type 4 fimbrial biogene 99.2 1.6E-09 5.5E-14 84.4 16.8 164 3-187 70-237 (252)
21 2q7f_A YRRB protein; TPR, prot 99.2 2.1E-09 7.3E-14 82.9 17.0 163 3-187 56-221 (243)
22 2vq2_A PILW, putative fimbrial 99.1 3.2E-09 1.1E-13 80.7 16.1 164 3-186 41-209 (225)
23 1xnf_A Lipoprotein NLPI; TPR, 99.1 4.5E-09 1.5E-13 82.6 17.5 197 4-206 43-261 (275)
24 3as5_A MAMA; tetratricopeptide 99.1 1.6E-09 5.6E-14 79.6 13.8 161 5-186 9-171 (186)
25 3hym_B Cell division cycle pro 99.1 3E-09 1E-13 85.6 16.3 197 3-201 89-314 (330)
26 3vtx_A MAMA; tetratricopeptide 99.1 6.6E-09 2.3E-13 77.3 17.0 166 3-189 4-171 (184)
27 3hym_B Cell division cycle pro 99.1 4.2E-09 1.4E-13 84.7 16.8 200 4-206 56-285 (330)
28 2pl2_A Hypothetical conserved 99.1 2.2E-09 7.4E-14 82.9 14.2 162 3-186 38-212 (217)
29 3uq3_A Heat shock protein STI1 99.1 1.9E-09 6.5E-14 83.7 13.9 182 4-206 5-222 (258)
30 3cv0_A Peroxisome targeting si 99.1 3.8E-09 1.3E-13 84.9 16.1 198 5-206 22-255 (327)
31 1fch_A Peroxisomal targeting s 99.1 5.4E-09 1.9E-13 85.7 15.6 202 3-206 97-345 (368)
32 4eqf_A PEX5-related protein; a 99.1 6.8E-09 2.3E-13 85.4 15.6 201 3-206 98-342 (365)
33 2gw1_A Mitochondrial precursor 99.0 7.4E-09 2.5E-13 88.5 16.4 199 4-206 237-464 (514)
34 3mkr_A Coatomer subunit epsilo 99.0 6.9E-09 2.4E-13 83.9 14.6 158 2-186 98-262 (291)
35 3cv0_A Peroxisome targeting si 99.0 6.6E-09 2.2E-13 83.5 14.2 154 13-186 147-313 (327)
36 3ieg_A DNAJ homolog subfamily 99.0 1.3E-08 4.6E-13 82.5 16.1 154 3-160 2-173 (359)
37 2gw1_A Mitochondrial precursor 99.0 1.9E-08 6.5E-13 85.9 17.0 63 2-65 37-99 (514)
38 3uq3_A Heat shock protein STI1 99.0 1.4E-08 4.8E-13 78.7 14.3 164 3-186 37-234 (258)
39 2fo7_A Synthetic consensus TPR 99.0 2.5E-08 8.5E-13 69.1 13.4 129 6-136 3-133 (136)
40 2fo7_A Synthetic consensus TPR 98.9 3.1E-08 1.1E-12 68.6 13.1 126 41-186 3-130 (136)
41 3fp2_A TPR repeat-containing p 98.9 9.8E-08 3.4E-12 82.1 17.4 197 6-206 245-477 (537)
42 1xnf_A Lipoprotein NLPI; TPR, 98.9 1.2E-07 4.1E-12 74.3 16.4 191 13-206 14-230 (275)
43 3ieg_A DNAJ homolog subfamily 98.9 6.2E-08 2.1E-12 78.5 14.6 163 3-186 36-215 (359)
44 4gyw_A UDP-N-acetylglucosamine 98.8 1.5E-07 5.2E-12 85.4 16.9 150 4-157 9-161 (723)
45 2ond_A Cleavage stimulation fa 98.8 1.3E-07 4.4E-12 76.6 14.8 170 16-205 69-255 (308)
46 4abn_A Tetratricopeptide repea 98.8 1.2E-07 4.2E-12 81.7 14.9 181 3-205 101-306 (474)
47 3fp2_A TPR repeat-containing p 98.8 2.6E-07 9E-12 79.4 16.3 143 41-186 245-405 (537)
48 3nf1_A KLC 1, kinesin light ch 98.8 8E-08 2.7E-12 76.5 12.2 165 4-186 27-222 (311)
49 3as5_A MAMA; tetratricopeptide 98.8 3.4E-07 1.2E-11 66.9 14.5 148 39-206 8-159 (186)
50 2ond_A Cleavage stimulation fa 98.8 2.8E-07 9.7E-12 74.6 15.0 161 4-186 99-268 (308)
51 1ouv_A Conserved hypothetical 98.7 8E-07 2.7E-11 70.2 16.5 177 4-189 6-216 (273)
52 3edt_B KLC 2, kinesin light ch 98.7 1.2E-07 4E-12 74.2 11.3 132 4-135 43-198 (283)
53 3nf1_A KLC 1, kinesin light ch 98.7 7.4E-08 2.5E-12 76.7 10.2 132 4-135 69-224 (311)
54 3u4t_A TPR repeat-containing p 98.7 3.1E-07 1.1E-11 71.9 13.4 146 8-157 7-158 (272)
55 3vtx_A MAMA; tetratricopeptide 98.7 1.1E-06 3.6E-11 65.2 14.5 149 38-206 4-156 (184)
56 3u4t_A TPR repeat-containing p 98.7 6.2E-07 2.1E-11 70.2 13.7 150 4-156 37-191 (272)
57 2h6f_A Protein farnesyltransfe 98.6 8.9E-07 3E-11 74.4 15.1 152 5-160 98-254 (382)
58 1ouv_A Conserved hypothetical 98.6 1.6E-06 5.5E-11 68.4 15.8 175 5-188 39-251 (273)
59 4abn_A Tetratricopeptide repea 98.6 4.4E-07 1.5E-11 78.2 12.3 160 4-186 137-319 (474)
60 2h6f_A Protein farnesyltransfe 98.6 2.5E-06 8.7E-11 71.6 15.5 180 4-205 131-323 (382)
61 4i17_A Hypothetical protein; T 98.5 2.8E-06 9.6E-11 65.1 13.4 151 3-157 6-169 (228)
62 3qou_A Protein YBBN; thioredox 98.5 6.1E-06 2.1E-10 66.2 15.4 147 7-157 120-271 (287)
63 2ooe_A Cleavage stimulation fa 98.5 3.9E-06 1.3E-10 72.8 15.0 168 17-205 292-477 (530)
64 2vsy_A XCC0866; transferase, g 98.5 3E-06 1E-10 74.3 14.0 148 17-186 2-155 (568)
65 3edt_B KLC 2, kinesin light ch 98.4 6.2E-07 2.1E-11 70.0 8.4 143 15-157 12-185 (283)
66 2r5s_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 61.9 11.5 155 8-184 10-169 (176)
67 1na0_A Designed protein CTPR3; 98.4 1E-05 3.4E-10 54.9 12.6 111 39-151 9-121 (125)
68 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.3E-05 4.4E-10 60.5 14.2 114 42-157 9-137 (213)
69 2yhc_A BAMD, UPF0169 lipoprote 98.4 3E-05 1E-09 59.6 16.4 162 5-186 5-211 (225)
70 3qky_A Outer membrane assembly 98.4 1.2E-05 4.2E-10 62.9 14.2 173 4-187 15-223 (261)
71 3urz_A Uncharacterized protein 98.4 7.5E-06 2.5E-10 62.4 12.6 155 12-189 12-187 (208)
72 4gyw_A UDP-N-acetylglucosamine 98.4 6.1E-06 2.1E-10 74.9 13.9 147 38-205 8-159 (723)
73 3mv2_B Coatomer subunit epsilo 98.4 5.8E-06 2E-10 67.4 12.4 152 3-156 99-270 (310)
74 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.5E-05 8.5E-10 58.8 15.3 129 7-139 9-154 (213)
75 1qqe_A Vesicular transport pro 98.3 5.1E-06 1.7E-10 66.7 11.7 164 6-187 39-227 (292)
76 2pzi_A Probable serine/threoni 98.3 1.8E-05 6.1E-10 71.3 16.2 166 15-203 402-580 (681)
77 2ooe_A Cleavage stimulation fa 98.3 1.1E-05 3.8E-10 70.0 14.3 150 4-157 321-479 (530)
78 1na0_A Designed protein CTPR3; 98.3 1E-05 3.6E-10 54.9 11.1 96 4-100 9-106 (125)
79 4i17_A Hypothetical protein; T 98.3 4.2E-05 1.4E-09 58.4 15.7 149 37-207 5-169 (228)
80 1qqe_A Vesicular transport pro 98.3 2.3E-05 7.9E-10 62.8 13.7 166 4-189 77-270 (292)
81 3mv2_B Coatomer subunit epsilo 98.2 1.2E-05 4.1E-10 65.5 11.7 142 23-187 85-239 (310)
82 4ga2_A E3 SUMO-protein ligase 98.2 1E-05 3.6E-10 58.4 10.0 139 14-156 7-149 (150)
83 2vyi_A SGTA protein; chaperone 98.2 4.8E-05 1.7E-09 51.9 12.8 117 38-157 11-130 (131)
84 1xi4_A Clathrin heavy chain; a 98.2 3.6E-05 1.2E-09 73.6 15.4 161 4-185 1134-1306(1630)
85 1a17_A Serine/threonine protei 98.2 4.1E-05 1.4E-09 54.9 12.7 125 5-132 14-143 (166)
86 1a17_A Serine/threonine protei 98.2 5.1E-05 1.7E-09 54.4 12.8 117 39-157 13-133 (166)
87 2vyi_A SGTA protein; chaperone 98.2 2.5E-05 8.4E-10 53.4 10.4 116 4-122 12-130 (131)
88 2lni_A Stress-induced-phosphop 98.2 3.8E-05 1.3E-09 52.8 11.3 118 36-155 13-132 (133)
89 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00016 5.4E-09 57.7 15.7 152 6-158 77-253 (293)
90 3u3w_A Transcriptional activat 98.1 6.1E-05 2.1E-09 60.2 12.5 149 8-157 79-253 (293)
91 2e2e_A Formate-dependent nitri 98.1 5.1E-05 1.7E-09 55.6 11.1 121 13-136 19-145 (177)
92 3gw4_A Uncharacterized protein 98.1 2.1E-05 7.1E-10 58.6 9.0 142 15-157 3-163 (203)
93 3qou_A Protein YBBN; thioredox 98.1 9.2E-05 3.1E-09 59.2 13.3 150 36-206 114-270 (287)
94 2lni_A Stress-induced-phosphop 98.0 5E-05 1.7E-09 52.2 10.2 112 3-117 15-129 (133)
95 2vsy_A XCC0866; transferase, g 98.0 8.7E-05 3E-09 64.9 13.9 131 4-137 23-159 (568)
96 4ga2_A E3 SUMO-protein ligase 98.0 1.4E-05 4.8E-10 57.7 7.4 107 48-157 6-115 (150)
97 1elw_A TPR1-domain of HOP; HOP 98.0 0.00012 4.1E-09 48.9 11.8 96 3-99 3-100 (118)
98 3ulq_A Response regulator aspa 98.0 8.5E-05 2.9E-09 61.4 13.1 148 13-160 112-283 (383)
99 3ro2_A PINS homolog, G-protein 98.0 2.5E-05 8.6E-10 62.1 9.5 179 8-187 9-251 (338)
100 3ulq_A Response regulator aspa 98.0 4.8E-05 1.7E-09 62.9 11.1 151 5-156 144-318 (383)
101 2pzi_A Probable serine/threoni 98.0 4.5E-05 1.5E-09 68.6 11.5 148 4-156 433-583 (681)
102 3sf4_A G-protein-signaling mod 98.0 1.4E-05 4.7E-10 65.8 7.2 152 5-157 128-323 (406)
103 4a1s_A PINS, partner of inscut 98.0 1.7E-05 5.7E-10 65.9 7.7 198 7-205 51-317 (411)
104 2ifu_A Gamma-SNAP; membrane fu 98.0 2.9E-05 9.8E-10 62.7 8.7 162 6-186 38-222 (307)
105 1xi4_A Clathrin heavy chain; a 98.0 0.00021 7.3E-09 68.4 15.5 169 16-205 1088-1264(1630)
106 3ro2_A PINS homolog, G-protein 98.0 1E-05 3.6E-10 64.3 6.0 163 5-186 124-330 (338)
107 4a1s_A PINS, partner of inscut 97.9 1.3E-05 4.4E-10 66.5 6.5 60 73-132 225-289 (411)
108 2c2l_A CHIP, carboxy terminus 97.9 0.00018 6.3E-09 57.3 13.1 96 3-99 3-100 (281)
109 3gyz_A Chaperone protein IPGC; 97.9 9E-05 3.1E-09 53.8 10.3 119 7-136 12-134 (151)
110 3sf4_A G-protein-signaling mod 97.9 5.5E-05 1.9E-09 62.1 10.2 182 5-187 10-255 (406)
111 3rjv_A Putative SEL1 repeat pr 97.9 0.00043 1.5E-08 52.6 14.6 160 4-187 18-196 (212)
112 3q15_A PSP28, response regulat 97.9 0.00027 9.1E-09 58.4 13.8 145 15-160 112-280 (378)
113 2e2e_A Formate-dependent nitri 97.9 5.7E-05 1.9E-09 55.4 8.7 135 50-205 21-162 (177)
114 2vgx_A Chaperone SYCD; alterna 97.9 9.5E-05 3.2E-09 53.2 9.6 97 38-136 20-119 (148)
115 1elw_A TPR1-domain of HOP; HOP 97.9 0.00039 1.3E-08 46.3 12.1 98 38-136 3-102 (118)
116 1p5q_A FKBP52, FK506-binding p 97.9 0.00018 6.3E-09 58.9 12.3 120 39-160 147-283 (336)
117 1elr_A TPR2A-domain of HOP; HO 97.9 8.9E-05 3E-09 50.6 8.8 91 7-98 7-106 (131)
118 2kck_A TPR repeat; tetratricop 97.9 0.00015 5.1E-09 48.0 9.6 92 42-135 9-106 (112)
119 4gco_A Protein STI-1; structur 97.9 0.00031 1.1E-08 49.0 11.6 93 42-136 16-111 (126)
120 3q49_B STIP1 homology and U bo 97.9 0.00026 8.7E-09 49.2 11.1 95 38-134 8-105 (137)
121 1p5q_A FKBP52, FK506-binding p 97.9 0.00018 6E-09 59.0 11.7 128 4-133 147-292 (336)
122 3q15_A PSP28, response regulat 97.8 0.00012 4E-09 60.5 10.6 128 7-135 144-290 (378)
123 3gyz_A Chaperone protein IPGC; 97.8 0.00022 7.5E-09 51.7 10.8 86 72-160 37-123 (151)
124 2xcb_A PCRH, regulatory protei 97.8 0.00021 7.3E-09 50.6 10.5 96 40-136 19-116 (142)
125 2vgx_A Chaperone SYCD; alterna 97.8 0.0002 6.9E-09 51.4 10.4 94 5-99 22-117 (148)
126 2kck_A TPR repeat; tetratricop 97.8 0.00015 5.2E-09 48.0 9.0 98 70-187 5-105 (112)
127 2xm6_A Protein corresponding t 97.8 0.0013 4.5E-08 56.2 17.0 164 17-189 56-253 (490)
128 2xm6_A Protein corresponding t 97.8 0.0013 4.6E-08 56.2 17.0 176 17-201 92-301 (490)
129 2r5s_A Uncharacterized protein 97.8 0.00034 1.2E-08 51.3 11.4 143 42-206 9-159 (176)
130 3upv_A Heat shock protein STI1 97.8 0.00031 1.1E-08 48.3 10.5 91 42-134 7-100 (126)
131 4gco_A Protein STI-1; structur 97.8 0.00034 1.1E-08 48.8 10.8 99 6-107 15-115 (126)
132 3sz7_A HSC70 cochaperone (SGT) 97.8 0.0003 1E-08 50.9 10.6 94 40-135 12-108 (164)
133 1hz4_A MALT regulatory protein 97.7 0.00052 1.8E-08 56.2 12.9 154 7-160 96-272 (373)
134 2dba_A Smooth muscle cell asso 97.7 0.001 3.5E-08 46.4 12.8 96 38-136 27-129 (148)
135 3u3w_A Transcriptional activat 97.7 0.0012 4E-08 52.5 14.4 125 44-186 80-223 (293)
136 3qky_A Outer membrane assembly 97.7 0.00085 2.9E-08 52.2 13.2 149 37-204 13-198 (261)
137 3urz_A Uncharacterized protein 97.7 0.00059 2E-08 51.6 11.8 126 45-189 10-154 (208)
138 1elr_A TPR2A-domain of HOP; HO 97.7 0.0003 1E-08 47.8 9.1 113 39-153 4-124 (131)
139 1hz4_A MALT regulatory protein 97.7 0.0014 4.6E-08 53.7 14.4 155 13-186 23-201 (373)
140 4e6h_A MRNA 3'-END-processing 97.7 0.00087 3E-08 60.3 14.1 140 14-157 353-520 (679)
141 3rjv_A Putative SEL1 repeat pr 97.7 0.00054 1.8E-08 52.1 11.1 141 22-187 4-157 (212)
142 3q49_B STIP1 homology and U bo 97.7 0.00071 2.4E-08 46.8 10.9 97 70-186 8-104 (137)
143 2ifu_A Gamma-SNAP; membrane fu 97.6 0.00056 1.9E-08 55.0 11.0 150 5-157 77-248 (307)
144 3k9i_A BH0479 protein; putativ 97.6 7.5E-05 2.6E-09 51.1 4.9 84 16-99 2-89 (117)
145 3sz7_A HSC70 cochaperone (SGT) 97.6 0.001 3.5E-08 47.9 11.4 96 70-186 10-106 (164)
146 4g1t_A Interferon-induced prot 97.6 0.0025 8.7E-08 53.6 15.4 178 4-202 94-292 (472)
147 2xcb_A PCRH, regulatory protei 97.6 0.00058 2E-08 48.2 9.7 96 70-186 17-113 (142)
148 1wao_1 Serine/threonine protei 97.6 0.00042 1.4E-08 59.6 10.2 147 10-159 12-184 (477)
149 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0012 4E-08 49.3 11.5 142 13-157 13-172 (198)
150 2fbn_A 70 kDa peptidylprolyl i 97.5 0.00091 3.1E-08 49.9 10.7 129 6-136 40-187 (198)
151 4g1t_A Interferon-induced prot 97.5 0.0012 4E-08 55.7 12.5 121 14-136 223-364 (472)
152 3upv_A Heat shock protein STI1 97.5 0.00091 3.1E-08 45.9 9.9 96 71-186 4-99 (126)
153 2dba_A Smooth muscle cell asso 97.5 0.0014 4.8E-08 45.6 11.0 96 70-186 27-126 (148)
154 1hxi_A PEX5, peroxisome target 97.5 0.00076 2.6E-08 46.5 8.6 86 47-134 25-113 (121)
155 4f3v_A ESX-1 secretion system 97.5 0.0013 4.4E-08 52.8 11.0 133 11-147 109-247 (282)
156 3gw4_A Uncharacterized protein 97.5 0.00043 1.5E-08 51.2 7.8 110 50-160 3-126 (203)
157 4e6h_A MRNA 3'-END-processing 97.4 0.0017 5.7E-08 58.5 12.5 151 6-157 380-557 (679)
158 3ro3_A PINS homolog, G-protein 97.4 0.00079 2.7E-08 47.2 8.6 129 5-134 10-157 (164)
159 1wao_1 Serine/threonine protei 97.4 0.00053 1.8E-08 59.0 8.9 115 48-183 15-134 (477)
160 2yhc_A BAMD, UPF0169 lipoprote 97.4 0.0032 1.1E-07 47.9 12.6 131 5-137 42-215 (225)
161 3ro3_A PINS homolog, G-protein 97.4 0.00075 2.6E-08 47.4 7.8 126 40-184 10-154 (164)
162 2xev_A YBGF; tetratricopeptide 97.3 0.0031 1.1E-07 42.9 10.5 85 14-99 12-104 (129)
163 4gcn_A Protein STI-1; structur 97.3 0.0015 5.2E-08 45.4 8.6 88 47-134 16-111 (127)
164 2xev_A YBGF; tetratricopeptide 97.3 0.0041 1.4E-07 42.3 10.8 89 46-136 9-106 (129)
165 1hxi_A PEX5, peroxisome target 97.3 0.0016 5.3E-08 44.9 8.3 95 73-188 19-114 (121)
166 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0031 1E-07 53.8 11.7 117 7-125 271-404 (457)
167 4gcn_A Protein STI-1; structur 97.3 0.0025 8.6E-08 44.2 9.3 102 5-109 9-119 (127)
168 2l6j_A TPR repeat-containing p 97.2 0.00027 9.1E-09 47.1 3.6 65 1-66 1-65 (111)
169 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0037 1.3E-07 53.3 11.6 116 39-157 268-401 (457)
170 2qfc_A PLCR protein; TPR, HTH, 97.2 0.023 7.9E-07 44.9 15.6 128 41-186 77-223 (293)
171 4f3v_A ESX-1 secretion system 97.2 0.0046 1.6E-07 49.6 10.9 128 42-189 105-238 (282)
172 3e4b_A ALGK; tetratricopeptide 97.1 0.014 4.6E-07 49.7 14.1 138 6-153 178-330 (452)
173 4b4t_Q 26S proteasome regulato 97.1 0.0098 3.4E-07 49.3 12.8 146 12-157 12-191 (434)
174 1ihg_A Cyclophilin 40; ppiase 97.0 0.006 2.1E-07 50.6 11.1 114 41-157 225-357 (370)
175 3k9i_A BH0479 protein; putativ 97.0 0.00066 2.3E-08 46.2 4.3 100 51-152 2-108 (117)
176 2l6j_A TPR repeat-containing p 97.0 0.0014 4.7E-08 43.4 5.6 82 72-157 5-94 (111)
177 2c2l_A CHIP, carboxy terminus 97.0 0.011 3.6E-07 46.9 11.5 96 38-135 3-101 (281)
178 1ihg_A Cyclophilin 40; ppiase 97.0 0.0051 1.7E-07 51.1 9.9 120 6-127 225-362 (370)
179 3n71_A Histone lysine methyltr 96.9 0.0071 2.4E-07 52.3 10.9 120 14-134 319-463 (490)
180 3rkv_A Putative peptidylprolyl 96.9 0.0067 2.3E-07 43.4 9.1 64 71-136 63-127 (162)
181 2if4_A ATFKBP42; FKBP-like, al 96.8 0.008 2.7E-07 49.1 9.9 127 5-135 180-328 (338)
182 2kat_A Uncharacterized protein 96.8 0.0082 2.8E-07 40.3 8.4 75 23-98 4-80 (115)
183 1klx_A Cysteine rich protein B 96.7 0.022 7.4E-07 40.1 10.3 117 13-137 4-128 (138)
184 3rkv_A Putative peptidylprolyl 96.7 0.0088 3E-07 42.8 8.3 97 72-187 12-125 (162)
185 4b4t_Q 26S proteasome regulato 96.7 0.029 9.8E-07 46.4 12.5 155 6-160 57-235 (434)
186 2if4_A ATFKBP42; FKBP-like, al 96.7 0.0039 1.3E-07 50.9 6.9 126 40-188 180-328 (338)
187 3n71_A Histone lysine methyltr 96.5 0.0059 2E-07 52.8 7.4 122 48-187 318-463 (490)
188 1na3_A Designed protein CTPR2; 96.5 0.025 8.5E-07 35.6 8.6 62 73-135 11-72 (91)
189 1na3_A Designed protein CTPR2; 96.5 0.021 7.2E-07 35.9 8.3 61 39-99 9-71 (91)
190 3ma5_A Tetratricopeptide repea 96.2 0.022 7.6E-07 37.4 7.5 60 71-132 7-67 (100)
191 2kat_A Uncharacterized protein 96.2 0.024 8.3E-07 37.8 7.8 63 70-134 18-81 (115)
192 3e4b_A ALGK; tetratricopeptide 96.2 0.083 2.9E-06 44.7 12.6 105 41-152 178-294 (452)
193 3mkq_A Coatomer beta'-subunit; 96.1 0.058 2E-06 48.5 11.7 92 48-157 661-752 (814)
194 3dra_A Protein farnesyltransfe 96.1 0.43 1.5E-05 38.4 16.9 148 7-157 70-236 (306)
195 3ma5_A Tetratricopeptide repea 96.0 0.042 1.4E-06 36.0 7.9 61 38-98 6-68 (100)
196 3qww_A SET and MYND domain-con 95.8 0.031 1.1E-06 47.5 8.0 60 72-131 341-407 (433)
197 2hr2_A Hypothetical protein; a 95.7 0.14 4.7E-06 37.3 10.0 21 13-33 20-40 (159)
198 2hr2_A Hypothetical protein; a 95.6 0.095 3.3E-06 38.1 9.1 93 74-186 14-129 (159)
199 3qwp_A SET and MYND domain-con 95.6 0.035 1.2E-06 47.1 7.8 88 45-132 293-397 (429)
200 3dra_A Protein farnesyltransfe 95.6 0.69 2.4E-05 37.2 16.7 138 16-156 45-195 (306)
201 3q7a_A Farnesyltransferase alp 95.5 0.88 3E-05 37.4 16.0 179 13-205 63-256 (349)
202 2uy1_A Cleavage stimulation fa 95.1 0.69 2.4E-05 39.7 14.2 142 7-158 216-371 (493)
203 1zu2_A Mitochondrial import re 95.0 0.046 1.6E-06 39.8 5.7 99 15-116 13-134 (158)
204 3qwp_A SET and MYND domain-con 94.8 0.17 5.9E-06 42.8 9.6 81 77-157 293-387 (429)
205 2kc7_A BFR218_protein; tetratr 94.7 0.13 4.5E-06 32.9 6.9 56 79-136 8-65 (99)
206 3ly7_A Transcriptional activat 94.6 0.49 1.7E-05 39.2 11.6 130 3-136 193-340 (372)
207 3qww_A SET and MYND domain-con 94.2 0.23 7.8E-06 42.1 9.0 74 84-157 311-398 (433)
208 1klx_A Cysteine rich protein B 94.1 0.71 2.4E-05 32.0 10.1 86 13-101 34-127 (138)
209 3dss_A Geranylgeranyl transfer 93.8 1.3 4.5E-05 36.1 12.4 129 5-136 109-268 (331)
210 1dce_A Protein (RAB geranylger 93.7 1.7 5.8E-05 38.0 13.8 134 20-158 89-243 (567)
211 2kc7_A BFR218_protein; tetratr 93.5 0.053 1.8E-06 34.9 3.1 50 15-65 11-61 (99)
212 1dce_A Protein (RAB geranylger 93.3 1.4 4.7E-05 38.6 12.6 180 19-205 44-240 (567)
213 2uy1_A Cleavage stimulation fa 93.0 0.68 2.3E-05 39.7 10.0 110 41-159 288-402 (493)
214 3q7a_A Farnesyltransferase alp 92.8 3.4 0.00012 33.8 14.6 150 5-157 89-258 (349)
215 1zu2_A Mitochondrial import re 91.6 0.49 1.7E-05 34.3 6.2 99 50-152 13-135 (158)
216 3dss_A Geranylgeranyl transfer 91.1 5.3 0.00018 32.4 14.2 131 20-154 90-240 (331)
217 3mkq_B Coatomer subunit alpha; 91.1 3.5 0.00012 30.3 11.4 43 51-96 17-59 (177)
218 3bee_A Putative YFRE protein; 91.0 2.1 7.2E-05 27.6 8.7 64 37-100 4-72 (93)
219 2p58_C Putative type III secre 90.9 2.5 8.4E-05 28.2 8.7 85 19-109 22-106 (116)
220 2uwj_G Type III export protein 90.4 2.3 8E-05 28.3 7.9 78 19-101 21-98 (115)
221 1pc2_A Mitochondria fission pr 90.2 0.67 2.3E-05 33.3 5.8 86 16-105 10-103 (152)
222 1wy6_A Hypothetical protein ST 90.1 3.1 0.00011 29.6 8.9 118 17-138 20-157 (172)
223 1v54_E Cytochrome C oxidase po 89.8 0.93 3.2E-05 30.3 5.7 59 90-149 29-87 (109)
224 2ff4_A Probable regulatory pro 89.7 0.91 3.1E-05 37.7 7.1 52 46-97 178-231 (388)
225 3u64_A Protein TP_0956; tetrat 89.3 1.7 5.9E-05 34.8 8.0 91 55-148 179-284 (301)
226 1wy6_A Hypothetical protein ST 88.9 4.8 0.00017 28.6 9.8 128 43-189 9-155 (172)
227 3bee_A Putative YFRE protein; 88.4 3.6 0.00012 26.5 8.2 63 3-66 5-70 (93)
228 3mkq_A Coatomer beta'-subunit; 88.4 2.7 9.3E-05 37.5 9.8 82 37-130 679-760 (814)
229 1pc2_A Mitochondria fission pr 88.4 1.7 5.7E-05 31.2 6.7 80 87-186 14-98 (152)
230 3ly7_A Transcriptional activat 88.3 5.1 0.00017 33.1 10.5 133 34-186 189-337 (372)
231 1k1a_A B-cell lymphoma 3-encod 88.3 3.9 0.00013 30.3 9.4 183 10-217 12-211 (241)
232 2v5f_A Prolyl 4-hydroxylase su 87.5 2.4 8.2E-05 27.6 6.8 53 12-64 13-71 (104)
233 2nsz_A Programmed cell death p 87.5 3 0.0001 28.8 7.6 64 42-106 10-78 (129)
234 2ff4_A Probable regulatory pro 86.0 3 0.0001 34.5 8.1 72 74-146 174-250 (388)
235 1v54_E Cytochrome C oxidase po 85.9 3.4 0.00012 27.5 6.6 27 70-96 44-70 (109)
236 2v5f_A Prolyl 4-hydroxylase su 84.4 6.2 0.00021 25.5 7.6 57 42-98 8-73 (104)
237 2y69_E Cytochrome C oxidase su 84.2 2.6 9E-05 29.7 5.7 60 90-150 72-131 (152)
238 2ion_A PDCD4, programmed cell 83.9 3 0.0001 29.8 6.2 65 41-106 11-80 (152)
239 4gns_B Protein CSD3, chitin bi 83.6 16 0.00056 33.1 12.1 125 42-186 251-398 (754)
240 3mkq_B Coatomer subunit alpha; 82.4 12 0.00043 27.3 11.9 98 16-131 17-114 (177)
241 4h7y_A Dual specificity protei 81.0 13 0.00045 26.7 9.4 28 70-97 12-45 (161)
242 4h7y_A Dual specificity protei 78.7 16 0.00054 26.3 8.5 64 85-149 74-137 (161)
243 2y69_E Cytochrome C oxidase su 78.7 8.2 0.00028 27.2 6.6 73 42-116 54-132 (152)
244 3u64_A Protein TP_0956; tetrat 78.7 18 0.00063 28.8 9.5 104 19-132 178-295 (301)
245 3lvg_A Clathrin heavy chain 1; 77.4 0.21 7.1E-06 43.2 -2.1 120 3-128 82-221 (624)
246 2nsz_A Programmed cell death p 77.1 3.4 0.00012 28.6 4.4 83 73-156 9-93 (129)
247 3ltj_A Alpharep-4; protein eng 76.4 19 0.00064 25.9 13.4 112 37-157 57-168 (201)
248 3esl_A Checkpoint serine/threo 75.9 13 0.00046 27.8 7.6 73 122-213 95-168 (202)
249 1nzn_A CGI-135 protein, fissio 75.1 6.9 0.00023 27.0 5.5 79 88-186 18-101 (126)
250 4fhn_B Nucleoporin NUP120; pro 73.5 63 0.0022 30.6 14.5 112 47-160 850-990 (1139)
251 3ygs_P Procaspase 9; apoptosis 73.3 15 0.0005 23.9 6.6 64 25-91 25-88 (97)
252 3lvg_A Clathrin heavy chain 1; 72.6 0.16 5.6E-06 43.9 -4.0 151 41-206 56-214 (624)
253 1ug3_A EIF4GI, eukaryotic prot 72.5 13 0.00044 30.1 7.4 93 42-135 14-114 (339)
254 1wdy_A 2-5A-dependent ribonucl 71.9 26 0.00089 26.2 8.9 46 171-217 228-281 (285)
255 2ion_A PDCD4, programmed cell 70.2 6 0.00021 28.2 4.4 84 73-157 11-96 (152)
256 3eiq_C Programmed cell death p 70.0 2.6 8.9E-05 34.7 2.7 84 73-157 219-304 (358)
257 3eiq_C Programmed cell death p 69.2 22 0.00075 29.1 8.1 68 41-109 219-291 (358)
258 3kea_A K1L; tropism, ANK repea 67.1 26 0.00088 27.0 8.0 129 15-157 39-174 (285)
259 2p1h_A APAF-1, apoptotic prote 67.0 22 0.00074 22.7 7.4 63 23-90 24-86 (94)
260 2d2s_A Exocyst complex compone 66.4 31 0.001 26.4 8.0 77 78-157 25-107 (235)
261 4b4t_R RPN7, 26S proteasome re 65.0 50 0.0017 27.4 9.8 94 41-135 133-237 (429)
262 3ltm_A Alpha-REP4; protein eng 64.7 37 0.0013 24.5 13.6 48 38-86 32-79 (211)
263 4fke_A Aminopeptidase N; zinc 63.2 95 0.0032 28.7 13.3 143 9-156 691-846 (909)
264 1wdy_A 2-5A-dependent ribonucl 63.0 45 0.0015 24.9 10.4 118 9-140 7-132 (285)
265 4gns_B Protein CSD3, chitin bi 62.2 92 0.0031 28.3 11.4 122 7-132 251-397 (754)
266 1wty_A Hypothetical protein TT 61.5 20 0.00068 24.1 5.5 71 70-146 20-91 (119)
267 2zu6_B Programmed cell death p 61.1 26 0.0009 28.0 7.0 64 42-106 169-237 (307)
268 3ljn_A Hypothetical protein; a 59.2 17 0.00059 28.9 5.8 88 10-103 23-113 (364)
269 2r9g_A AAA ATPase, central reg 58.1 56 0.0019 24.4 8.2 61 76-137 16-84 (204)
270 4b4t_R RPN7, 26S proteasome re 56.4 34 0.0012 28.5 7.2 62 73-134 133-196 (429)
271 1k1a_A B-cell lymphoma 3-encod 55.9 56 0.0019 23.7 8.4 148 45-217 12-178 (241)
272 3ctd_A Putative ATPase, AAA fa 55.8 63 0.0022 24.3 8.3 65 73-137 34-106 (213)
273 2wvi_A Mitotic checkpoint seri 54.7 35 0.0012 24.5 6.1 52 90-141 79-131 (164)
274 4fhn_B Nucleoporin NUP120; pro 54.7 1.5E+02 0.005 28.2 12.3 111 44-157 817-954 (1139)
275 4b4t_P 26S proteasome regulato 54.1 96 0.0033 25.9 12.1 162 9-188 142-324 (445)
276 3bge_A Predicted ATPase; struc 53.6 59 0.002 24.2 7.2 62 76-137 9-78 (201)
277 3l6a_A Eukaryotic translation 49.9 29 0.00098 28.5 5.6 65 41-106 14-83 (364)
278 2zu6_B Programmed cell death p 48.7 24 0.00081 28.2 4.8 84 73-157 168-253 (307)
279 1bd8_A P19INK4D CDK4/6 inhibit 48.2 20 0.00068 24.3 3.9 112 10-131 5-123 (156)
280 3ffl_A Anaphase-promoting comp 48.1 45 0.0015 24.1 5.7 54 11-64 27-88 (167)
281 4aez_C MAD3, mitotic spindle c 47.2 43 0.0015 25.5 5.7 69 123-210 131-200 (223)
282 1zbp_A Hypothetical protein VP 47.0 70 0.0024 25.1 7.1 47 50-96 8-56 (273)
283 3twr_A Tankyrase-2; ankyrin re 46.9 64 0.0022 21.9 6.5 101 46-157 12-121 (165)
284 2dzn_A Probable 26S proteasome 45.7 40 0.0014 24.3 5.5 176 11-217 6-203 (228)
285 2b7e_A PRE-mRNA processing pro 44.7 25 0.00085 20.7 3.2 32 87-119 2-35 (59)
286 3hra_A Ankyrin repeat family p 44.4 67 0.0023 22.5 6.5 15 126-140 158-172 (201)
287 1jog_A Hypothetical protein HI 44.2 72 0.0024 22.3 6.3 101 70-189 39-143 (146)
288 2etb_A Transient receptor pote 43.5 9.5 0.00032 28.7 1.6 121 9-140 4-166 (256)
289 2p58_C Putative type III secre 42.9 71 0.0024 21.2 5.5 62 86-157 22-85 (116)
290 2f40_A Hypothetical protein PF 42.7 3.7 0.00013 26.2 -0.6 28 176-205 21-48 (96)
291 3ltj_A Alpharep-4; protein eng 41.7 91 0.0031 22.1 15.7 113 36-157 25-137 (201)
292 3jxi_A Vanilloid receptor-rela 41.2 30 0.001 25.8 4.3 121 10-140 8-170 (260)
293 3mwm_A ZUR, putative metal upt 40.9 31 0.0011 23.8 3.9 43 11-53 20-62 (139)
294 1ug3_A EIF4GI, eukaryotic prot 40.5 21 0.00072 28.8 3.3 82 73-155 13-95 (339)
295 3rjo_A Endoplasmic reticulum a 40.2 1.5E+02 0.0053 24.3 15.2 105 8-117 201-312 (419)
296 4a1g_A Mitotic checkpoint seri 39.7 98 0.0034 21.9 8.9 67 123-208 82-149 (152)
297 1y8m_A FIS1; mitochondria, unk 39.6 96 0.0033 21.7 7.1 49 120-186 56-104 (144)
298 2lti_A Astexin1; sidechain-TO- 37.8 9.1 0.00031 17.7 0.4 8 210-217 3-10 (26)
299 3aji_A 26S proteasome non-ATPa 37.5 1.1E+02 0.0038 21.9 9.1 176 10-217 9-200 (231)
300 3kea_A K1L; tropism, ANK repea 37.2 35 0.0012 26.2 4.1 112 11-131 66-183 (285)
301 2uwj_G Type III export protein 36.8 69 0.0023 21.2 4.7 61 87-157 22-84 (115)
302 2o03_A Probable zinc uptake re 36.8 33 0.0011 23.3 3.5 45 10-54 16-60 (131)
303 1y8m_A FIS1; mitochondria, unk 36.5 80 0.0027 22.2 5.4 69 36-106 36-110 (144)
304 3ffl_A Anaphase-promoting comp 36.5 1.1E+02 0.0036 22.1 6.2 28 6-33 65-92 (167)
305 2rg8_A Programmed cell death p 36.3 98 0.0033 22.1 6.1 56 42-98 13-72 (165)
306 3qye_A TBC1 domain family memb 36.0 1.3E+02 0.0045 23.7 7.5 75 86-164 164-248 (331)
307 1mzb_A Ferric uptake regulatio 35.2 1E+02 0.0035 20.8 6.5 62 96-158 8-70 (136)
308 2w57_A Ferric uptake regulatio 34.6 1.1E+02 0.0039 21.1 7.0 64 95-159 6-70 (150)
309 1zbp_A Hypothetical protein VP 34.2 69 0.0024 25.1 5.2 112 13-135 6-129 (273)
310 2d2s_A Exocyst complex compone 34.2 1.5E+02 0.005 22.5 7.0 89 10-99 24-119 (235)
311 3mwm_A ZUR, putative metal upt 33.9 92 0.0032 21.3 5.5 48 111-158 18-65 (139)
312 2yru_A Steroid receptor RNA ac 33.8 37 0.0013 23.0 3.2 44 93-136 48-91 (118)
313 1mzb_A Ferric uptake regulatio 33.4 44 0.0015 22.8 3.7 58 29-88 8-70 (136)
314 3esl_A Checkpoint serine/threo 33.2 1.5E+02 0.0051 22.1 9.0 69 72-141 81-150 (202)
315 2yru_A Steroid receptor RNA ac 33.0 96 0.0033 20.9 5.2 63 5-67 20-89 (118)
316 2fe3_A Peroxide operon regulat 32.8 1.1E+02 0.0038 21.0 5.8 61 97-158 13-73 (145)
317 3ltm_A Alpha-REP4; protein eng 32.3 1.4E+02 0.0046 21.3 15.2 113 36-157 61-173 (211)
318 3aji_A 26S proteasome non-ATPa 32.2 1.3E+02 0.0045 21.5 6.5 142 45-217 9-167 (231)
319 3o48_A Mitochondria fission 1 31.9 64 0.0022 22.4 4.2 69 36-106 37-111 (134)
320 2fu4_A Ferric uptake regulatio 31.5 87 0.003 18.8 6.9 61 96-157 7-68 (83)
321 2rg8_A Programmed cell death p 31.3 46 0.0016 23.9 3.6 82 73-157 12-95 (165)
322 2xai_A ASB-9, ankyrin repeat a 31.3 1.6E+02 0.0055 21.8 7.9 133 11-157 7-147 (261)
323 2o03_A Probable zinc uptake re 31.3 1.1E+02 0.0036 20.6 5.4 46 112-157 16-61 (131)
324 2xig_A Ferric uptake regulatio 31.2 45 0.0015 23.3 3.5 63 25-89 13-79 (150)
325 2qq8_A TBC1 domain family memb 31.1 83 0.0028 25.1 5.5 39 98-136 220-258 (334)
326 3eyy_A Putative iron uptake re 30.3 1.3E+02 0.0043 20.7 5.7 61 96-158 9-69 (145)
327 1nzn_A CGI-135 protein, fissio 30.1 1.3E+02 0.0045 20.4 10.6 82 20-105 17-106 (126)
328 3jxi_A Vanilloid receptor-rela 29.9 1.4E+02 0.0049 21.9 6.5 55 78-132 9-72 (260)
329 3ibx_A TENA, HP1287, putative 29.9 1.7E+02 0.0057 21.6 7.8 93 70-162 112-215 (221)
330 3o48_A Mitochondria fission 1 29.9 82 0.0028 21.8 4.5 48 121-186 58-105 (134)
331 3no6_A Transcriptional activat 29.9 1.8E+02 0.0063 22.1 8.9 93 70-163 128-232 (248)
332 3b7b_A Euchromatic histone-lys 29.8 1.5E+02 0.0053 21.2 7.3 132 11-157 15-157 (237)
333 2w57_A Ferric uptake regulatio 29.6 52 0.0018 22.9 3.6 61 27-89 5-70 (150)
334 2y1l_E Darpin-8.4; hydrolase-i 29.4 1.3E+02 0.0045 20.4 5.8 134 10-157 17-159 (169)
335 4ets_A Ferric uptake regulatio 29.0 51 0.0017 23.4 3.5 64 25-89 19-87 (162)
336 3twr_A Tankyrase-2; ankyrin re 28.4 1.4E+02 0.0047 20.1 7.7 116 74-217 9-136 (165)
337 2xig_A Ferric uptake regulatio 27.9 1.3E+02 0.0045 20.8 5.5 62 96-158 17-78 (150)
338 2etb_A Transient receptor pote 27.6 1.8E+02 0.0062 21.2 7.4 57 77-133 5-70 (256)
339 4ets_A Ferric uptake regulatio 27.2 1.6E+02 0.0056 20.6 7.1 72 87-159 13-87 (162)
340 1oai_A Nuclear RNA export fact 27.2 51 0.0018 19.2 2.6 22 19-40 35-57 (59)
341 4g8k_A 2-5A-dependent ribonucl 27.1 1.9E+02 0.0066 22.2 7.0 120 11-143 206-331 (337)
342 3l6a_A Eukaryotic translation 27.0 1.8E+02 0.0062 23.6 6.8 82 72-157 13-99 (364)
343 3cqc_A Nuclear pore complex pr 27.0 2.2E+02 0.0075 22.0 12.0 26 42-67 37-62 (270)
344 2rfa_A Transient receptor pote 27.0 1.2E+02 0.0042 21.7 5.5 25 113-137 158-182 (232)
345 2cos_A Serine/threonine protei 25.5 1E+02 0.0035 17.7 3.8 40 24-68 10-51 (54)
346 2fe3_A Peroxide operon regulat 25.2 1.7E+02 0.0057 20.0 7.2 68 55-123 6-73 (145)
347 3utm_A Tankyrase-1; tankyrase, 24.5 1.9E+02 0.0064 22.1 6.5 103 44-157 26-137 (351)
348 3us6_A Histidine-containing ph 23.5 1.9E+02 0.0065 20.1 8.9 50 143-212 95-144 (153)
349 3m0z_A Putative aldolase; MCSG 23.5 1.3E+02 0.0046 22.9 4.9 81 55-135 147-247 (249)
350 3hra_A Ankyrin repeat family p 23.3 1.9E+02 0.0065 20.0 8.6 13 51-63 48-60 (201)
351 3m6y_A 4-hydroxy-2-oxoglutarat 23.2 1.4E+02 0.0048 23.1 5.0 81 55-135 170-270 (275)
352 3eyy_A Putative iron uptake re 23.2 51 0.0017 22.8 2.5 61 26-88 6-69 (145)
353 4fn6_A Thiaminase-2, thiaminas 22.7 2.4E+02 0.0081 20.9 9.0 92 70-162 109-212 (229)
354 3crd_A Raidd; caspase recruitm 22.5 1.4E+02 0.0048 19.0 4.4 68 26-101 26-93 (100)
355 3qil_A Clathrin heavy chain 1; 22.0 1.6E+02 0.0054 20.1 4.6 47 11-60 39-85 (125)
356 2aja_A Ankyrin repeat family p 20.5 3.4E+02 0.012 21.9 8.7 106 44-160 94-215 (376)
357 3hzj_A Rabgap1L, RAB GTPase-ac 20.4 1.4E+02 0.0049 23.3 4.9 40 97-136 180-219 (310)
358 2i2x_B MTAC, methyltransferase 20.4 43 0.0015 25.8 1.8 53 104-157 35-87 (258)
359 3d9h_A CDNA FLJ77766, highly s 20.3 2.8E+02 0.0095 20.8 9.0 12 173-184 201-212 (285)
360 2i7a_A Calpain 13; calcium-dep 20.1 2.3E+02 0.0079 19.8 6.2 41 55-95 45-86 (174)
361 2npu_A FKBP12-rapamycin comple 20.0 2.2E+02 0.0074 19.4 5.4 51 48-101 49-104 (126)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=3.3e-36 Score=262.94 Aligned_cols=182 Identities=12% Similarity=0.055 Sum_probs=173.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC---------HHHHHHHHHhcC----CCCC
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL---------VHDSLCLLDTLK----TPAP 70 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~---------~~~A~~~~~~m~----~~~~ 70 (219)
...++.+|++|++.|+++.|.++|++|.+.|+.||.+|||+||.+|++.+. ++.|.++|++|. .| |
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 356899999999999999999999999999999999999999999998664 788999999996 68 9
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.+|||+||++|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++|++|.+.|+.||..||++||++
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhh
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~ 205 (219)
|++.|++ ++|.++|++|+ .++ ..||++++..|+..+
T Consensus 185 ~~~~g~~------------------d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 185 SMDTKNA------------------DKVYKTLQRLRDLVRQVS-KSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHTTCH------------------HHHHHHHHHHHHHTSSBC-HHHHHHHHHHHHSHH
T ss_pred HhhCCCH------------------HHHHHHHHHHHHhCCCcC-HHHHHHHHHHHhcCc
Confidence 9999999 99999999998 467 899999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.7e-33 Score=241.32 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCC---------
Q 041894 21 SQAKQLHAQIFKTLEPNSR-FLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGL--------- 86 (219)
Q Consensus 21 ~~a~~l~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~--------- 86 (219)
+.++.+...+.+.+..+.+ .+++.+|++|++.|++++|.++|++|+ .| |.+|||+||++|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4556777888888876554 468999999999999999999999997 68 99999999999998765
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhh
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQ 166 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~ 166 (219)
+++|.++|++|.+.|+.||..||+++|++|++.|+++.|.+++++|.+.|+.||..|||+||.+|++.|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~--------- 156 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA--------- 156 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH---------
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH---------
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhhhH---------hHHHcCCCCCCcC
Q 041894 167 GFGFNGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKFEK---------RVVSAGHDADLDA 219 (219)
Q Consensus 167 ~~~~~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~~~---------~m~~~g~~pd~~~ 219 (219)
++|.++|++|. .|| ..|||+||.+|++.|+ +|++.|+.|+..|
T Consensus 157 ---------~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T 212 (501)
T 4g26_A 157 ---------DKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST 212 (501)
T ss_dssp ---------HHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred ---------HHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999998 457 8999999999999994 7999999998654
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.89 E-value=7.8e-24 Score=193.17 Aligned_cols=121 Identities=10% Similarity=0.046 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCccc
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV 108 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 108 (219)
..-..|||+||++||+.|++++|.++|++|. .| |++|||+||++|++.|++++|.++|++|.+.|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3345689999999999999999999998764 68 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCh-hhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 109 FPSVLKSCTLLVDF-RFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 109 ~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|+++|+++|+.|.. +.|.+++++|.+.|+.||..+|++++.+..+.+-+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 99999999999985 78999999999999999999999999999987666
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.87 E-value=2.3e-23 Score=190.08 Aligned_cols=147 Identities=13% Similarity=0.152 Sum_probs=128.3
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHH---HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIF---KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKS 76 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~---~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~ 76 (219)
..|||++|++||+.|++++|..+|+.|. +.|+.||..|||+||++||+.|++++|.++|++|. .| |++|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 3689999999999999999999998876 45899999999999999999999999999999997 68 9999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc------HHHHHHHHH
Q 041894 77 IIRCCTQNGLL-VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD------LYTNNALMN 149 (219)
Q Consensus 77 li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~ll~ 149 (219)
||+++++.|+. ++|.++|++|.+.|+.||..||+++|+++.+.+-++..+.+ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh-----CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999999888876555444333 3355554 677778888
Q ss_pred HHHhcCC
Q 041894 150 MYAQSQN 156 (219)
Q Consensus 150 ~y~~~g~ 156 (219)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 8987763
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.72 E-value=1.6e-16 Score=139.47 Aligned_cols=201 Identities=9% Similarity=-0.037 Sum_probs=166.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+..+|+.++.++.+.|+++.|..+|+.+.+.. +.+..+|+.+...|.+.|++++|.++|+++. .|.+..+|+.++.+
T Consensus 338 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 416 (597)
T 2xpi_A 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS 416 (597)
T ss_dssp CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788899999999999999999999998654 5578889999999999999999999998874 33267899999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
|.+.|++++|.++|++|.+.+ +.+..+|..+..+|.+.|++++|.++++.+.+.. +.+..+|+.+..+|.+.|+++++
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999988653 4477889999999999999999999999988775 34778899999999999999887
Q ss_pred --HHHHh---------------------hhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 --IYDRF---------------------QGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 --~~~~~---------------------~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+.+ ...+++.|+.++|.++|+++.+ +++..+|..+...|.+.|+
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 34332 1223588999999999998763 4327889999999999985
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.70 E-value=2.3e-16 Score=138.50 Aligned_cols=198 Identities=9% Similarity=-0.084 Sum_probs=155.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|+.++..|.+.|+++.|.++|+++.+. +++..+|+.+..+|.+.|++++|..+|+++. .|.+..+|+.++.++
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHH
Confidence 456777788888888888888888888765 5788888888888888888888888888775 232678888888888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
.+.|++++|..+|+++.+.. +.+..+|..+...|.+.|++++|.++|+.+.+.. +.+..+|+.++.+|.+.|+++++
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 427 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAI 427 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888887432 3456788888888888888888888888887754 34577888888888888888877
Q ss_pred -HHHH--------------hhhhccCCcchhhHHHHhhcCCC---CCCeeehhHHHHHHhhhhH
Q 041894 161 -IYDR--------------FQGFGFNGGREASVHEVLDKIPE---RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 -~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~---~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +...+++.|++++|.++|+++.+ .+ ..+|+.+...|.+.|+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-PLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCC
Confidence 3443 22234578888999999998863 35 7889999999999984
No 7
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=1.7e-11 Score=99.47 Aligned_cols=180 Identities=8% Similarity=-0.065 Sum_probs=145.0
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~ 80 (219)
|+..++..+...+...++.+.|...++.+.+.+..|+ ...+..+-..|.+.|++++|.+.++. .. +..++..+...
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~-~~~~~~~l~~~ 139 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GD-SLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CC-SHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CC-CHHHHHHHHHH
Confidence 4567788888889999999999999999998886564 45555566789999999999999998 44 78899999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHH----HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSV----LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
+.+.|++++|.+.|+++.+. .|+.. ...+ +..+...|++++|..+++.+.+.. +.+...++.+-.+|.+.|+
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCHHHHHHHHHHHHhh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999875 47653 2223 344445589999999999998874 5688899999999999999
Q ss_pred chhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 157 MDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
+ ++|++.|++.. .|++..+|+.+...+...|+
T Consensus 216 ~------------------~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 216 W------------------EAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp H------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred H------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9 88888888755 34326677777777777764
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=3.1e-11 Score=100.48 Aligned_cols=198 Identities=12% Similarity=0.031 Sum_probs=127.1
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.++..+-..+.+.|+++.|...|.++.+.. +.+..+|..+-..|.+.|++++|...|+++. .|.+...|..+-..+.
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 345555566677788888888888877654 3356677777778888888888888777654 2314556666666666
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
..|++++|...|.+..+. .|+ ..++..+...+.+.|+++.|...++.+.+.. +.+..+|..+..+|.+.|+++.+
T Consensus 215 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp TTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 667777777666665542 343 4566666666666677777777666666543 22345666666666666766655
Q ss_pred -HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 -IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 -~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +....++.|+.++|.++|+++.+ ++...+|..+...|.+.|+
T Consensus 292 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 2322 22233466666888888887664 3224567777788777774
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.38 E-value=2.9e-11 Score=100.72 Aligned_cols=151 Identities=11% Similarity=0.011 Sum_probs=66.5
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.+|..+-..+.+.|+++.|...|+++.+.. +.+..+|..+...+.+.|++++|...|+++. .|.+..++..+-..+.
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344455555555555555555555554432 2223344445555555555555555544432 2212233344444444
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
..|++++|.++|+++.+. .|+ ..+|..+...+.+.|+++.|...++.+.+.. +.+...|..+-..+...|+++.
T Consensus 147 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 147 ALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp TTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTH
T ss_pred HccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 444455555544444432 222 2344444444445555555555544444432 1123333344444444444443
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.36 E-value=3.2e-11 Score=101.92 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=144.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+..++..+...+.+.|+++.|..+|+.+.+.. +.+..+|..+..+|.+.|++++|...|+.+. .|.+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45678888899999999999999999998764 5578899999999999999999999999875 34267899999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCc----ccHHHHHH------------HHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLK------------SCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~------------~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
|.+.|++++|..+|+++.+. .|+. ..+..+.. .+.+.|+++.|...++.+.+.. +.+...+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 180 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR 180 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 99999999999999999874 4543 45555544 3888999999999999998775 4578889
Q ss_pred HHHHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCC
Q 041894 145 NALMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
..+..+|.+.|+++.+ +|+. +...+.+.|+.++|.+.|+++.
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999666 2322 2222346677777777777655
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.32 E-value=7.7e-11 Score=99.57 Aligned_cols=156 Identities=7% Similarity=-0.029 Sum_probs=133.3
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh---hhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP---VAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~~~l 77 (219)
+..+|..+..++.+.|+++.|...|+++.+.+ +.+..++..+...|.+.|++++|...|+.+. .|.+. .+|..+
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 56788899999999999999999999999876 4468889999999999999999999999875 34134 667766
Q ss_pred HHH------------HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 78 IRC------------CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 78 i~~------------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
+.. +...|++++|...|+++.+.. +.+...+..+...|.+.|+++.|..+++.+.+.. +.+..++.
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 215 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFY 215 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 554 889999999999999988642 3356788999999999999999999999988775 45688999
Q ss_pred HHHHHHHhcCCchhHH
Q 041894 146 ALMNMYAQSQNMDMHI 161 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~ 161 (219)
.+..+|.+.|+++.++
T Consensus 216 ~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 216 KISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHH
Confidence 9999999999998874
No 12
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=2.9e-10 Score=86.63 Aligned_cols=181 Identities=10% Similarity=0.001 Sum_probs=146.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-..+.+.|+++.|...+..+.+.. +.+...+..+...|...|++++|...++... .|.+..+|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5677788888999999999999999998865 4467889999999999999999999998764 332678899999999
Q ss_pred Hhc-CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 82 TQN-GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 82 ~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
... |++++|...|++..+.+..|+ ...+..+...+...|+++.|...+....+.. +.+...+..+..+|.+.|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~-- 163 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL-- 163 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH--
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH--
Confidence 999 999999999999888433444 4678888899999999999999999988775 34577889999999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC----CCCeeehhHHHHHHhhhh
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE----RNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~----~~~~~~~n~ll~~~~~~~ 205 (219)
++|.++|++..+ .+ ...|..+...+.+.|
T Consensus 164 ----------------~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 164 ----------------GDADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALG 196 (225)
T ss_dssp ----------------HHHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTT
T ss_pred ----------------HHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcC
Confidence 888888876552 23 455555555555554
No 13
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.29 E-value=2.1e-10 Score=89.53 Aligned_cols=182 Identities=11% Similarity=0.041 Sum_probs=145.7
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...|..+-..+...|+++.|...|+++.+.. +.+...+..+-..|.+.|++++|...|++.. .|.+..+|..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 4567777788899999999999999998875 4467888999999999999999999998764 232778899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
...|++++|.++|++..+.+..|+ ...+..+...+...|++++|...+....+.. +.+...+..+...|.+.|++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~--- 191 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY--- 191 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH---
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH---
Confidence 999999999999999887545563 5677888889999999999999999988775 34577889999999999999
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHHhhhh
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGCNKFE 205 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~~~~~ 205 (219)
++|.++|++..+. +....|..+...|.+.|
T Consensus 192 ---------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 192 ---------------VPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223 (252)
T ss_dssp ---------------HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcc
Confidence 7777777765432 11344555555555555
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.28 E-value=6e-12 Score=107.18 Aligned_cols=182 Identities=7% Similarity=0.062 Sum_probs=87.1
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
||..+|..++.++.+.|++++|...++..++. .+++.+.+.|+.+|.+.|+++++.++++ .| +..+|+.+-.+|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~p-n~~a~~~IGd~~ 132 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GP-NNAHIQQVGDRC 132 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTT---CC-------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CC-cHHHHHHHHHHH
Confidence 57788999999999999999999977777664 5567889999999999999999888876 57 778999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
...|++++|..+|..+ ..|.-+.+++.+.|+++.|.+.+... .+..+|..++.++...|+++.|+
T Consensus 133 ~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 133 YDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp ----CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHH
Confidence 9999999999999876 48889999999999999999888877 36789999999999999888772
Q ss_pred ------------HHHhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhhh
Q 041894 162 ------------YDRFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNKF 204 (219)
Q Consensus 162 ------------~~~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~~ 204 (219)
...+..++.+.|.+++|..+++.....+ -...|+-+--.|++-
T Consensus 198 ~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 1224455668888899988888654322 033455554455443
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.28 E-value=6.7e-13 Score=113.02 Aligned_cols=170 Identities=9% Similarity=0.030 Sum_probs=46.2
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+.|++++|.++++++ +++.+|+.|..++.+.|++++|++.|.. .+ |..+|..+++++...|++++|..+++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik--a~-D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK--AD-DPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc--CC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 447788888888877 2334788888888888888888888864 34 66788888888888888888888666
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH------hhh
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------FQG 167 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~------~~~ 167 (219)
..++. .++..+.+.++.+|.+.|++++++++++ .|+..+|+.+-..|...|++++| .|.. +..
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~ 156 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAS 156 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHH
Confidence 55553 4556778888888888888887777764 36667888888888888888877 3444 444
Q ss_pred hccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 168 FGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
.+++.|+++.|.+.+.+. .+ +.+|..++.+|+..|+
T Consensus 157 ~L~~Lg~yq~AVea~~KA--~~-~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA--NS-TRTWKEVCFACVDGKE 192 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH--TC-HHHHHHHHHHHHHTTC
T ss_pred HHHHhccHHHHHHHHHHc--CC-chhHHHHHHHHHHcCc
Confidence 456888889999999998 36 8899999999999883
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.25 E-value=1.1e-10 Score=96.34 Aligned_cols=200 Identities=10% Similarity=-0.031 Sum_probs=150.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...|..+-..+.+.|+++.|..+|+++.+.. +.+..+|..+-..|.+.|++++|...|++.. .|.+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3457777788899999999999999998875 4578899999999999999999999998865 342688999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-----------cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-ccHHHHHHHHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-----------HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LDLYTNNALMN 149 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-----------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~ 149 (219)
...|++++|...|+++.+.. |+ ...+..+...+.+.|+++.|...++.+.+.... ++..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999987632 22 223334577888889999999999888777533 26778888889
Q ss_pred HHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 150 MYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 150 ~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 99999998877 2333 33334578888999999987653 3326678888888888774
No 17
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.24 E-value=2.5e-10 Score=88.27 Aligned_cols=183 Identities=15% Similarity=0.025 Sum_probs=149.1
Q ss_pred CC-ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHH
Q 041894 1 MT-STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSI 77 (219)
Q Consensus 1 ~P-~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~l 77 (219)
|| +...+..+-..+.+.|+++.|...|++..+.. +.+...+..+-..+.+.|++++|...|+... .|.+..+|..+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44 56777778888999999999999999998765 4577888899999999999999999998764 44367889999
Q ss_pred HHHHHhc-----------CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 78 IRCCTQN-----------GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 78 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
-..+... |++++|...|++..+. .|+ ...+..+-..+...|++++|...++...+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 9999999999998764 465 4577788888999999999999999998887 7788899
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
.+-.+|...|++ ++|.+.|++.. .|++...+..+-..+.+.|+
T Consensus 156 ~la~~~~~~g~~------------------~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 156 ALAELYLSMGRL------------------DEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHcCCH------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 999999999999 88888888765 33325667777777777764
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.20 E-value=7.7e-10 Score=90.84 Aligned_cols=200 Identities=12% Similarity=0.001 Sum_probs=152.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-..+.+.|+++.|...|.++.+.. +.+..++..+-..|.+.|++++|...|+... .|.+..+|..+...+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677778889999999999999999875 4577889999999999999999999998764 332788999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcc-cHHH---------------HHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHN-VFPS---------------VLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTN 144 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~ 144 (219)
...|++++|...|+++.+.. |+.. .+.. .+..+...|+++.|...++.+.+..... +..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 99999999999999988653 3321 2211 2344447888999999988887765332 57788
Q ss_pred HHHHHHHHhcCCchhHH--HHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 145 NALMNMYAQSQNMDMHI--YDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~~--~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
..+...|.+.|+++.++ |+. +...+.+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 88888999999988772 333 22334578888999999987652 3326678888888877774
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.19 E-value=3.2e-10 Score=87.61 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=94.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-..+.+.|+++.|..+|+++.+.. +.+...+..+-..|.+.|++++|...|+... .|.+..+|..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3455566667777788888888888777643 3356677777777888888888888877653 221567777777888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
...|++++|.++|++..+.. +.+...+..+...+.+.|+++.|...++...+.. +.+...+..+...|.+.|+++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888888888887776542 2345567777777778888888888877776654 335667777777788888883
No 20
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.18 E-value=1.6e-09 Score=84.38 Aligned_cols=164 Identities=5% Similarity=-0.089 Sum_probs=139.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CCChhhHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PAPPVAWKSII 78 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~li 78 (219)
+..++..+-..+.+.|+++.|...+.++.+.. +.+...+..+...|.+.|++++|.+.|+.... |.+...|..+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 45677888889999999999999999998875 44678899999999999999999999998754 31457788899
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
..+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. ..+...+..+...|.+.|+.
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~- 225 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDR- 225 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCH-
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCH-
Confidence 99999999999999999987643 2346688889999999999999999999987764 35677888899999999999
Q ss_pred hHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 159 MHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.++++++.+
T Consensus 226 -----------------~~A~~~~~~~~~ 237 (252)
T 2ho1_A 226 -----------------DTAASYGLQLKR 237 (252)
T ss_dssp -----------------HHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHH
Confidence 999999988763
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.18 E-value=2.1e-09 Score=82.93 Aligned_cols=163 Identities=10% Similarity=-0.053 Sum_probs=140.1
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~ 79 (219)
+..++..+-..+.+.|+++.|...+.++.+.. +.+..++..+...|...|++++|...++... .. +..+|..+..
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 133 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGT 133 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45677788888999999999999999998875 4477888999999999999999999998764 34 7788999999
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. ..+..++..+..+|.+.|++
T Consensus 134 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~-- 209 (243)
T 2q7f_A 134 VLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENR-- 209 (243)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT--
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCH--
Confidence 9999999999999999987642 2356688888999999999999999999988775 34677899999999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.+.|++..+
T Consensus 210 ----------------~~A~~~~~~~~~ 221 (243)
T 2q7f_A 210 ----------------EKALEMLDKAID 221 (243)
T ss_dssp ----------------THHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHc
Confidence 999999988763
No 22
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.14 E-value=3.2e-09 Score=80.71 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=138.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-CCHHHHHHHHHhcCC----CCChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-NLVHDSLCLLDTLKT----PAPPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~----~~~~~~~~~l 77 (219)
+..+|..+...+...|+++.|...++.+.+.. +.+..++..+...|... |++++|...++.... |.+..+|..+
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 119 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK 119 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence 35678888889999999999999999998875 44678899999999999 999999999988643 2135788999
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...+...|++++|...|++..+.. +.+...+..+...+.+.|+++.|...++...+.....+...+..+...+...|+.
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 999999999999999999987642 2246678888999999999999999999988776425677788888899999999
Q ss_pred hhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 158 DMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+.|..+++.+.
T Consensus 199 ------------------~~a~~~~~~~~ 209 (225)
T 2vq2_A 199 ------------------QAAYEYEAQLQ 209 (225)
T ss_dssp ------------------HHHHHHHHHHH
T ss_pred ------------------HHHHHHHHHHH
Confidence 99999888765
No 23
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.14 E-value=4.5e-09 Score=82.58 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=136.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+-..+...|+++.|...|.++.+.. +.+..+|..+-..|.+.|++++|...|+... .|.+..+|..+-..|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 4567777778888888888888888887765 3467788888888888888888888887764 232677888888888
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
.+.|++++|...|++..+. .|+.......+..+...|+++.|...+....... .++...+. +...+...++.+.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~ 197 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLM 197 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHH
Confidence 8888888888888887763 4666555556666677788888888887766553 23333333 555555555554331
Q ss_pred --H------------------HHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhH
Q 041894 162 --Y------------------DRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 --~------------------~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~ 206 (219)
+ ..+.....+.|+.++|.+.|++....+ +..|.....++.+.|+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~l~~ 261 (275)
T 1xnf_A 198 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNFVEHRYALLELSL 261 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHH
Confidence 1 113333457788899999999877665 5445555555555554
No 24
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.13 E-value=1.6e-09 Score=79.63 Aligned_cols=161 Identities=13% Similarity=-0.024 Sum_probs=135.5
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..|..+-..+.+.|+++.|...++.+.+.. +.+..++..+...|...|++++|...++... .|.+..+|..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667778889999999999999887654 3467888999999999999999999998764 3326788999999999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
..|++++|.+.|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|++
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~----- 160 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRH----- 160 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH-----
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCH-----
Confidence 9999999999999987652 3456778888899999999999999999988775 34678899999999999999
Q ss_pred HHhhhhccCCcchhhHHHHhhcCC
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|.+.+++..
T Consensus 161 -------------~~A~~~~~~~~ 171 (186)
T 3as5_A 161 -------------EEALPHFKKAN 171 (186)
T ss_dssp -------------HHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHH
Confidence 99999888755
No 25
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.12 E-value=3e-09 Score=85.57 Aligned_cols=197 Identities=7% Similarity=-0.145 Sum_probs=138.4
Q ss_pred ChhHHHHHHhCccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
+..+|..+-..+...| +++.|...|+...+.. +.+...|..+-..|...|++++|...|+... .|.+..++..+-.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3556677777777888 8888888888887654 3356677888888888888888888887764 2314567777888
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC--------CCccHHHHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG--------VDLDLYTNNALMNMY 151 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g--------~~~~~~~~~~ll~~y 151 (219)
.+...|++++|...|++..+.. +.+...+..+...+...|+++.|...++...+.. ...+..++..+-.+|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 8888888888888888876542 2345677777888888888888888888766542 133456778888888
Q ss_pred HhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCCC--CCeeehhHHHHHH
Q 041894 152 AQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPER--NGNVELSSGLAGC 201 (219)
Q Consensus 152 ~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~~--~~~~~~n~ll~~~ 201 (219)
.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+. ++...+..+...+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 888888766 2332 223334677779999999987743 2144555555555
No 26
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.12 E-value=6.6e-09 Score=77.32 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=139.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
++..|..+=..+.+.|+++.|...|++..+.. +-+..++..+-..|.+.|++++|...+.... .|.+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 46778888889999999999999999998875 4477889999999999999999999998764 33267788888899
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...++++.|...+.+..+.. +-+...+..+-..+.+.|++++|...++...+.. +.+...|..+-.+|.+.|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~--- 157 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR--- 157 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH---
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH---
Confidence 999999999999999876542 2245678888889999999999999999988875 34677899999999999999
Q ss_pred HHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 161 IYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 161 ~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
++|.+.|++..+.+
T Consensus 158 ---------------~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 158 ---------------DEAVKYFKKALEKE 171 (184)
T ss_dssp ---------------HHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHHHHhCC
Confidence 99999998765443
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.12 E-value=4.2e-09 Score=84.72 Aligned_cols=200 Identities=8% Similarity=-0.043 Sum_probs=161.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
..++..+...+.+.|+++.|..++.++.+.. +.+...|..+-..|...| ++++|...|+... .|.+..+|..+...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 134 (330)
T 3hym_B 56 ASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS 134 (330)
T ss_dssp TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 3456667778889999999999999998865 446778889999999999 9999999998864 33267889999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+...|++++|...|++..+.. +.+...+..+-..|...|+++.|...++...+.. +.+...+..+...|.+.|+++.+
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 135 FAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 999999999999999987653 2345677788899999999999999999988765 45678899999999999999988
Q ss_pred --HHHH-----------------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 --IYDR-----------------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 --~~~~-----------------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +.....+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 285 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence 3333 11223478999999999998652 3326778888888888875
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.11 E-value=2.2e-09 Score=82.91 Aligned_cols=162 Identities=8% Similarity=-0.039 Sum_probs=127.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-----------CCHHHHHHHHHhcC--CCC
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-----------NLVHDSLCLLDTLK--TPA 69 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~m~--~~~ 69 (219)
+...|..+-..+.+.|+++.|...+++..+.. +.+...+..+-..|.+. |++++|...|+... .|.
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~ 116 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence 35667777788899999999999999999876 44677888888899999 99999999998764 443
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+..+|..+=..+...|++++|...|++..+.. .+...+..+-..+...|++++|...++...+.. +.+...+..+-.
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 67889999999999999999999999988766 677888899999999999999999999988875 346778888999
Q ss_pred HHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 150 ~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+|.+.|++ ++|.+.|++..
T Consensus 194 ~~~~~g~~------------------~~A~~~~~~~~ 212 (217)
T 2pl2_A 194 ALLLKGKA------------------EEAARAAALEH 212 (217)
T ss_dssp HHTC---------------------------------
T ss_pred HHHHccCH------------------HHHHHHHHHHh
Confidence 99999999 99998887654
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.11 E-value=1.9e-09 Score=83.71 Aligned_cols=182 Identities=8% Similarity=-0.047 Sum_probs=136.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CC---C----hhhH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PA---P----PVAW 74 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~---~----~~~~ 74 (219)
..+|..+-..+.+.|+++.|...|....+.. .+...+..+-..|.+.|++++|...|..... |. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567777788889999999999999999888 7888999999999999999999999987641 10 1 5789
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCC------------------------CCC-CcccHHHHHHHHhcccChhhHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSG------------------------VYP-DHNVFPSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~p-~~~t~~~ll~~~~~~g~~~~a~~~~ 129 (219)
..+-..+...|++++|...|++..+.. ..| +...+..+-..+...|+++.|...+
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999999999999999999987632 223 2345666666777777788887777
Q ss_pred HHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 130 ACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 130 ~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+...+.. +.+...+..+-.+|.+.|++ ++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 163 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 163 TEMIKRA-PEDARGYSNRAAALAKLMSF------------------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHhCCH------------------HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 7776654 33566777777777777777 777777776542 2214556666666666553
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.10 E-value=3.8e-09 Score=84.86 Aligned_cols=198 Identities=10% Similarity=0.043 Sum_probs=149.9
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..+...-..+.+.|+++.|..+|+++.+.. +.+...+..+-..|.+.|++++|...|+... .|.+..+|..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence 345556667788999999999999998865 4477888889999999999999999998764 3326788999999999
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcc-cHHHH--------------HH-HHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHN-VFPSV--------------LK-SCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l--------------l~-~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
..|++++|.+.|++..+. .|+.. .+..+ -. .+...|+++.|...++...+.. +.+...+..
T Consensus 101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 999999999999998765 33332 33222 12 3778899999999999988775 346788888
Q ss_pred HHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 147 LMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 147 ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
+...|.+.|+++.+ .|+. +.....+.|+.++|.+.|++..+ ++....|..+-..|.+.|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999877 2333 22334578899999999987652 3225677778888877774
No 31
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.07 E-value=5.4e-09 Score=85.69 Aligned_cols=202 Identities=14% Similarity=0.071 Sum_probs=144.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH----
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS---- 76 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~---- 76 (219)
+..+|..+-..+.+.|+++.|...|..+.+.. +.+..++..+...|.+.|++++|...|+.+. .|.+...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 45678888889999999999999999998876 4578889999999999999999999998764 2212222221
Q ss_pred -----------HHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 77 -----------IIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 77 -----------li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
.+..+...|++++|...|+++.+.. -.++..++..+...+.+.|+++.|...++...+.. +.+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 176 AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 2334447778888888888776542 11135677777778888888888888888776664 3356677
Q ss_pred HHHHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCC--CCC-----------eeehh
Q 041894 145 NALMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPE--RNG-----------NVELS 195 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~--~~~-----------~~~~n 195 (219)
..+...|.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+ ++. ...|.
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 334 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS 334 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence 7788888888888776 2333 22233467888999999987652 221 35688
Q ss_pred HHHHHHhhhhH
Q 041894 196 SGLAGCNKFEK 206 (219)
Q Consensus 196 ~ll~~~~~~~~ 206 (219)
.+..+|.+.|+
T Consensus 335 ~l~~~~~~~g~ 345 (368)
T 1fch_A 335 TLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhCC
Confidence 88888888875
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.05 E-value=6.8e-09 Score=85.43 Aligned_cols=201 Identities=11% Similarity=0.008 Sum_probs=142.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCCh---------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPP--------- 71 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~--------- 71 (219)
+..+|..+-..+.+.|+++.|...|+++.+.. +.+..++..+-..|.+.|++++|...|+.... |.+.
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 176 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence 46778888899999999999999999998875 44678899999999999999999999987641 2011
Q ss_pred -hhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 72 -VAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 72 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
..+..+...+.+.|++++|..+|+++.+.. -.++..++..+...+.+.|+++.|...++...+.. +.+..+|..+..
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 255 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGA 255 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223345677788888888888888876542 11245677788888888888888888888877764 345678888888
Q ss_pred HHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHhhcCCCC---------------CCeeehhHHH
Q 041894 150 MYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVLDKIPER---------------NGNVELSSGL 198 (219)
Q Consensus 150 ~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~~~m~~~---------------~~~~~~n~ll 198 (219)
+|.+.|+++.+ .|+. +...+.+.|+.++|.+.|++..+. + ...|..+-
T Consensus 256 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~~~~~l~ 334 (365)
T 4eqf_A 256 TLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAIS-GNIWAALR 334 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-------------CHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhH-HHHHHHHH
Confidence 88888888777 2333 333345778889999999876521 2 34577777
Q ss_pred HHHhhhhH
Q 041894 199 AGCNKFEK 206 (219)
Q Consensus 199 ~~~~~~~~ 206 (219)
.++...|+
T Consensus 335 ~~~~~~g~ 342 (365)
T 4eqf_A 335 IALSLMDQ 342 (365)
T ss_dssp HHHHHHTC
T ss_pred HHHHHcCc
Confidence 77777774
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.05 E-value=7.4e-09 Score=88.48 Aligned_cols=199 Identities=8% Similarity=-0.116 Sum_probs=158.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..++..+-..+.+.|+++.|...|..+.+..-. ...+..+...|.+.|++++|...++... .|.+..+|..+...+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 456777778899999999999999999887633 8888999999999999999999998764 232678899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH-
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH- 160 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~- 160 (219)
...|++++|...|++..+.. +.+...+..+...+...|+++.|...+....+.. +.+...+..+...|.+.|+++.+
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999987653 2356688888999999999999999999988765 34567888999999999999877
Q ss_pred -HHHH--------------------hhhhccC---CcchhhHHHHhhcCCC--CCCeeehhHHHHHHhhhhH
Q 041894 161 -IYDR--------------------FQGFGFN---GGREASVHEVLDKIPE--RNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 161 -~~~~--------------------~~~~~~~---~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~~~~~ 206 (219)
.|+. +.....+ .|+.++|.+.|++... ++....|..+-..|.+.|+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~ 464 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED 464 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC
Confidence 2333 1112246 8999999999987652 3325677777788877774
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.03 E-value=6.9e-09 Score=83.95 Aligned_cols=158 Identities=9% Similarity=-0.013 Sum_probs=126.0
Q ss_pred CChh-HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhH---H
Q 041894 2 TSTK-TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAW---K 75 (219)
Q Consensus 2 P~~~-~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~---~ 75 (219)
|+.. .+..+-..+.+.|+++.|...+++ +.+...+..+...|.+.|++++|...|+.+. .| +.... .
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~l~~ 170 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDE-DATLTQLAT 170 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc-CcHHHHHHH
Confidence 5433 344444788899999999999987 5678899999999999999999999999886 45 43211 2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
+++..+...|++++|..+|+++.+. .+.+...++.+-.++.+.|++++|...++...+.. +.+..++..+...+...|
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g 248 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLG 248 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2334444568999999999999876 34567788999999999999999999999988775 346778999999999999
Q ss_pred CchhHHHHHhhhhccCCcchhh-HHHHhhcCC
Q 041894 156 NMDMHIYDRFQGFGFNGGREAS-VHEVLDKIP 186 (219)
Q Consensus 156 ~~~~~~~~~~~~~~~~~g~~~~-a~~l~~~m~ 186 (219)
+. ++ +.+++++..
T Consensus 249 ~~------------------~eaa~~~~~~~~ 262 (291)
T 3mkr_A 249 KP------------------PEVTNRYLSQLK 262 (291)
T ss_dssp CC------------------HHHHHHHHHHHH
T ss_pred CC------------------HHHHHHHHHHHH
Confidence 99 65 567887765
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.02 E-value=6.6e-09 Score=83.48 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=131.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
.+...|+++.|...+..+.+.. +.+..++..+-..|.+.|++++|...++... .|.+..+|..+...+...|++++|
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 4788899999999999998876 4478889999999999999999999998764 332678899999999999999999
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-----------cHHHHHHHHHHHHhcCCchh
Q 041894 91 LTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-----------DLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 91 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-----------~~~~~~~ll~~y~~~g~~~~ 159 (219)
...|++..+.. +.+...+..+...+.+.|+++.|...++...+..... +...|..+..+|.+.|+.
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-- 302 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP-- 302 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH--
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH--
Confidence 99999987642 2346788899999999999999999999987765442 578999999999999999
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|.+++++..
T Consensus 303 ----------------~~A~~~~~~~l 313 (327)
T 3cv0_A 303 ----------------DLVELTYAQNV 313 (327)
T ss_dssp ----------------HHHHHHTTCCS
T ss_pred ----------------HHHHHHHHHHH
Confidence 99999988654
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.02 E-value=1.3e-08 Score=82.48 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=124.2
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
|...+..+-..+.+.|+++.|...|+.+.+.. +.+..++..+-..|.+.|++++|...|+... .|.+..+|..+-..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45567777778889999999999999998865 4467888999999999999999999998764 33267889999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC---C-cccHHHH------------HHHHhcccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP---D-HNVFPSV------------LKSCTLLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
+...|++++|...|++..+. .| + ...+..+ ...+...|+++.|...++...+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 99999999999999998764 45 2 3334333 477888999999999999988775 3567788
Q ss_pred HHHHHHHHhcCCchhH
Q 041894 145 NALMNMYAQSQNMDMH 160 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~ 160 (219)
..+-..|.+.|+++.+
T Consensus 158 ~~~~~~~~~~~~~~~A 173 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKA 173 (359)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCCCHHHH
Confidence 8899999999999433
No 37
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.00 E-value=1.9e-08 Score=85.90 Aligned_cols=63 Identities=14% Similarity=0.121 Sum_probs=35.2
Q ss_pred CChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 2 TSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 2 P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
|+..+|..+..++.+.|+++.|...++.+.+.. +.+..+|..+..+|.+.|++++|...|+.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455555555555666666666666666555543 234445555555566666666655555443
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.4e-08 Score=78.73 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=134.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcC--CCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcCC---------
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTL--EPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLKT--------- 67 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g--~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--------- 67 (219)
+..+|..+-..+.+.|+++.|...+....+.. ..++ ..++..+-..|.+.|++++|...|+....
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 116 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT 116 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH
Confidence 45677888888999999999999999988754 2222 57888899999999999999999887542
Q ss_pred -----------------C--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 68 -----------------P--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 68 -----------------~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
. .+...|..+-..+...|++++|...|++..+.. +.+..+|..+-..+.+.|+++.|...
T Consensus 117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 1 134678888999999999999999999987643 33567888899999999999999999
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 129 HACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 129 ~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++...+.. +.+...|..+-.+|.+.|++ ++|.+.|++..
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~------------------~~A~~~~~~a~ 234 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEY------------------ASALETLDAAR 234 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhH------------------HHHHHHHHHHH
Confidence 99988875 34578899999999999999 88888887654
No 39
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=2.5e-08 Score=69.10 Aligned_cols=129 Identities=11% Similarity=0.046 Sum_probs=105.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
+|..+...+.+.|+++.|..++..+.+.. +.+...+..+...+...|++++|...|+.+. .|.+...|..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 56677778888999999999999988765 3467788888889999999999999998764 23267788889999999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.|++++|.++|+++.+.. +.+...+..+...+.+.|+++.|...+..+.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 999999999999987643 2345678888889999999999999998887654
No 40
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=3.1e-08 Score=68.62 Aligned_cols=126 Identities=11% Similarity=0.053 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
.|..+...|.+.|++++|..+|+.+. .|.+..+|..+...+...|++++|..+|+++.+.. +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778888999999999999998864 23267889999999999999999999999987653 3345678888899999
Q ss_pred ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.|+++.|...++.+.+.. +.+...+..+...|.+.|++ ++|.+.|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~------------------~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDY------------------DEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH------------------HHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccH------------------HHHHHHHHHHH
Confidence 999999999999988875 34577888899999999999 99999988764
No 41
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.89 E-value=9.8e-08 Score=82.10 Aligned_cols=197 Identities=8% Similarity=-0.100 Sum_probs=148.1
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
+|..+-..+...|+++.|...|....+.. |+...+..+-..|.+.|++++|...|+... .|.+..+|..+...+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 45555567778889999999999888764 557778888888899999999999988764 23267888888899999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--H
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--I 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~ 161 (219)
.|++++|...|++..+.. +-+...+..+...+...|+++.|...++...+.. +.+...+..+-..|.+.|+++.+ .
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999998877642 2245678888888889999999999998887765 34566888888889999999877 3
Q ss_pred HHHhh--------------------hhccCC----------cchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhhH
Q 041894 162 YDRFQ--------------------GFGFNG----------GREASVHEVLDKIP--ERNGNVELSSGLAGCNKFEK 206 (219)
Q Consensus 162 ~~~~~--------------------~~~~~~----------g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~~ 206 (219)
|+... ....+. |+.++|.+.|++.. .++....|..+-..|.+.|+
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~ 477 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK 477 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 44311 111223 88899999998766 23325677777788877774
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.89 E-value=1.2e-07 Score=74.31 Aligned_cols=191 Identities=9% Similarity=-0.054 Sum_probs=145.1
Q ss_pred CccccCChhHHHHHHHHHHHcCCC---CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEP---NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~---~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
.....++++.|...|+++.+.... .+..++..+-..|...|++++|...|+... .|.+..+|..+-..+...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 456678999999999999987421 246688899999999999999999998864 332688999999999999999
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH-
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR- 164 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~- 164 (219)
++|...|++..+.. +.+...+..+-..+.+.|+++.|...++...+.. |+......++..+.+.|+++.+ .|+.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999987642 2356788899999999999999999999998865 4444555555666777888776 2322
Q ss_pred ------------hhhhccCCcchhhHHHHhhcCCCCCC------eeehhHHHHHHhhhhH
Q 041894 165 ------------FQGFGFNGGREASVHEVLDKIPERNG------NVELSSGLAGCNKFEK 206 (219)
Q Consensus 165 ------------~~~~~~~~g~~~~a~~l~~~m~~~~~------~~~~n~ll~~~~~~~~ 206 (219)
+.......++.++|.+.+++....+. ...|..+-..|.+.|+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 230 (275)
T 1xnf_A 171 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGD 230 (275)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCC
Confidence 22333466677888888887775530 2456666677766664
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.87 E-value=6.2e-08 Score=78.51 Aligned_cols=163 Identities=6% Similarity=-0.105 Sum_probs=135.1
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--C---CChhhHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--P---APPVAWKSI 77 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~---~~~~~~~~l 77 (219)
+..++..+-..+.+.|+++.|...++.+.+.. +.+...+..+-..|.+.|++++|...|+.... | .+...+..+
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 35678888889999999999999999998875 34678899999999999999999999998753 2 144455544
Q ss_pred ------------HHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 78 ------------IRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 78 ------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
...+...|++++|..+|++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...+.
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 192 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFY 192 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 578899999999999999987652 3356788889999999999999999999988765 45678899
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+...|.+.|++ ++|.+.|++..
T Consensus 193 ~la~~~~~~~~~------------------~~A~~~~~~a~ 215 (359)
T 3ieg_A 193 KISTLYYQLGDH------------------ELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 999999999999 88888887655
No 44
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.82 E-value=1.5e-07 Score=85.35 Aligned_cols=150 Identities=12% Similarity=0.063 Sum_probs=130.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|+.+=..+.+.|++++|...|++.++.. +-+...|+.|=..|.+.|++++|+..|++.. .|.+..+|+.+=..|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5678888889999999999999999998875 3367889999999999999999999998754 442688999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
...|++++|.+.|++..+. .|+ ...|..+-..|.+.|++++|...++...+.. .-+...+..|..+|...|++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999997763 565 4688899999999999999999999988875 23577899999999999999
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.82 E-value=1.3e-07 Score=76.64 Aligned_cols=170 Identities=8% Similarity=-0.026 Sum_probs=122.5
Q ss_pred ccCCh-------hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChh-hHHHHHHHHHhcC
Q 041894 16 SIKTK-------SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPV-AWKSIIRCCTQNG 85 (219)
Q Consensus 16 ~~~~~-------~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~-~~~~li~~~~~~g 85 (219)
+.|++ +.|..+|++..+.--+-+...|..+...+.+.|++++|..+|+... .|.+.. +|..+...+.+.|
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence 35775 8999999998873223456689999999999999999999998764 341344 8999999999999
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHHHHH-hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHH
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVLKSC-TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
++++|..+|+...+.. +++...|....... ...|+.+.|..+++...+.. +.+...|..++..+.+.|++
T Consensus 149 ~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~------- 219 (308)
T 2ond_A 149 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED------- 219 (308)
T ss_dssp CHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCH-------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCH-------
Confidence 9999999999987653 22333443332222 23689999999999877664 34677888999999999999
Q ss_pred hhhhccCCcchhhHHHHhhcCCCC---C---CeeehhHHHHHHhhhh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPER---N---GNVELSSGLAGCNKFE 205 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~---~---~~~~~n~ll~~~~~~~ 205 (219)
++|+.+|++.... + ....|..++..+.+.|
T Consensus 220 -----------~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 220 -----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp -----------HHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred -----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 7777777765431 1 1335666666655555
No 46
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.80 E-value=1.2e-07 Score=81.72 Aligned_cols=181 Identities=9% Similarity=-0.076 Sum_probs=135.7
Q ss_pred ChhHHHHHHhCccccCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTK-SQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
+...+..+=..+...|++ +.|...|.+..+.. +.+...|..+-..|.+.|++++|...|+... .| +..+|..+-.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CHHHHHHHHH
Confidence 345566666778888888 99999998888765 3357788888888899999999999888754 56 6777888888
Q ss_pred HHHhc---------CChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcc--------cChhhHHHHHHHHHHhCCC--c
Q 041894 80 CCTQN---------GLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLL--------VDFRFGESVHACIIRLGVD--L 139 (219)
Q Consensus 80 ~~~~~---------g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~--~ 139 (219)
.+... |++++|...|++..+. .| +...|..+-.+|... |++++|...++...+.... .
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 8899999999887654 34 356777788888877 8899999988888776421 3
Q ss_pred cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 140 DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 140 ~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
+...|..+-.+|.+.|++ ++|.+.|++.. .++....|..+-..+...|
T Consensus 257 ~~~~~~~lg~~~~~~g~~------------------~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESY------------------GEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp CHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 677888888888888988 88888887654 2331445555555555555
No 47
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.78 E-value=2.6e-07 Score=79.40 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=118.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL 118 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 118 (219)
++..+-..+...|++++|...|+... .| +..+|..+-..+...|++++|...|++..+.. +.+..+|..+-..+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 46666678899999999999998875 67 77888999999999999999999999987643 2346788889999999
Q ss_pred ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH--------------hhhhccCCcchhhHHHHh
Q 041894 119 LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR--------------FQGFGFNGGREASVHEVL 182 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~--------------~~~~~~~~g~~~~a~~l~ 182 (219)
.|+++.|...++...+.. +.+...+..+-.+|.+.|+++.+ .|+. +...+.+.|+.++|.+.|
T Consensus 323 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999999988875 33567889999999999999988 3433 333346899999999999
Q ss_pred hcCC
Q 041894 183 DKIP 186 (219)
Q Consensus 183 ~~m~ 186 (219)
++..
T Consensus 402 ~~a~ 405 (537)
T 3fp2_A 402 DIAK 405 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.78 E-value=8e-08 Score=76.48 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=130.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-------C-
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------P- 68 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~- 68 (219)
..++..+-..+...|+++.|..++.++.+. .......++..+-..|...|++++|...+++... +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 467888888999999999999999999874 2334566788889999999999999999887531 1
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----
Q 041894 69 --APPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL---- 135 (219)
Q Consensus 69 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~---- 135 (219)
....+|..+-..|...|++++|...|++..+. +-.| ....+..+-..+...|+++.|...++...+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 03467888999999999999999999997653 2223 3456788888999999999999999997765
Q ss_pred --CCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 136 --GVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 136 --g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+-.| ...++..+-.+|.+.|++ ++|.++|++..
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~al 222 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKF------------------KQAETLYKEIL 222 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 2233 456788899999999999 77777766544
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.77 E-value=3.4e-07 Score=66.94 Aligned_cols=148 Identities=5% Similarity=-0.041 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...+..+-..+...|++++|...|+.... |.+..+|..+...+...|++++|..+|++..+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34567778889999999999999998762 3267889999999999999999999999987652 33566788888999
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeeh
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVEL 194 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~ 194 (219)
...|+++.|...++...+.. +.+...+..+...|.+.|++ ++|.++|++..+ ++....|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~------------------~~A~~~~~~~~~~~~~~~~~~ 147 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRF------------------DEAIDSFKIALGLRPNEGKVH 147 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcH------------------HHHHHHHHHHHhcCccchHHH
Confidence 99999999999999988775 45677888899999999999 999999987653 3215677
Q ss_pred hHHHHHHhhhhH
Q 041894 195 SSGLAGCNKFEK 206 (219)
Q Consensus 195 n~ll~~~~~~~~ 206 (219)
..+...|.+.|+
T Consensus 148 ~~la~~~~~~~~ 159 (186)
T 3as5_A 148 RAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 778888877774
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.76 E-value=2.8e-07 Score=74.58 Aligned_cols=161 Identities=5% Similarity=-0.038 Sum_probs=128.5
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-HH-HHHHHHHHHhhcCCHHHHHHHHHhcCC--CCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-RF-LISRLLFIYNNFNLVHDSLCLLDTLKT--PAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~li~ 79 (219)
...|..+...+.+.|+++.|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|+.... |.+...|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 457888888889999999999999999974 453 33 899999999999999999999998653 314444544433
Q ss_pred HHH-hcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCc--cHHHHHHHHHHHHhc
Q 041894 80 CCT-QNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDL--DLYTNNALMNMYAQS 154 (219)
Q Consensus 80 ~~~-~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~ll~~y~~~ 154 (219)
... ..|++++|..+|+...+. .| +...|..+...+.+.|+.+.|+.+++...+.. +.| ....|..++..+.+.
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 322 369999999999997754 34 45688888899999999999999999988863 455 467899999999999
Q ss_pred CCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 155 QNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 155 g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
|+. +.|..++++..
T Consensus 255 g~~------------------~~a~~~~~~a~ 268 (308)
T 2ond_A 255 GDL------------------ASILKVEKRRF 268 (308)
T ss_dssp SCH------------------HHHHHHHHHHH
T ss_pred CCH------------------HHHHHHHHHHH
Confidence 999 88888888765
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.73 E-value=8e-07 Score=70.15 Aligned_cols=177 Identities=12% Similarity=0.001 Sum_probs=131.4
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~ 79 (219)
..++..+=..+.+.|+++.|...|.+..+.+ +...+..+-..|.+ .+++++|...|+.....++..++..+-.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556666667778889999999999888733 45667777778888 8999999999987653326788888888
Q ss_pred HHHh----cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 80 CCTQ----NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 80 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.|.. .+++++|...|+...+.+ +...+..+-..|.. .++++.|...++...+.+ +...+..+-..|
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888 899999999998887765 55677777777777 889999999998887766 455666777777
Q ss_pred Hh----cCCchhH--HHHH------------hhhhccC----CcchhhHHHHhhcCCCCC
Q 041894 152 AQ----SQNMDMH--IYDR------------FQGFGFN----GGREASVHEVLDKIPERN 189 (219)
Q Consensus 152 ~~----~g~~~~~--~~~~------------~~~~~~~----~g~~~~a~~l~~~m~~~~ 189 (219)
.+ .++++.+ .|+. +.....+ .|+.++|.+.|++..+.+
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 216 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 216 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence 77 7888666 2333 1112224 677788888888766544
No 52
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.72 E-value=1.2e-07 Score=74.22 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=105.7
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC-------C--
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT------LEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK-------T-- 67 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~------g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-------~-- 67 (219)
..++..+-..+...|+++.|...+.+..+. +-.| ...++..+-..|...|++++|...|.+.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456778888899999999999999998865 3223 45678889999999999999999988753 1
Q ss_pred -CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 68 -PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 68 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
|....+|..+-..|...|++++|..+|++..+. +-.| ...++..+-..|...|+++.|...++...+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 213567888999999999999999999997654 1133 2457888889999999999999999987654
No 53
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=7.4e-08 Score=76.67 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=104.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-------C-
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKT------LE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------P- 68 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~------g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------~- 68 (219)
..++..+-..+...|+++.|...+.+..+. +- .....++..+-..|...|++++|...|++... +
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 356777788899999999999999998775 22 23456788899999999999999999987531 1
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHhHhC------CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 69 --APPVAWKSIIRCCTQNGLLVESLTCFVRMIGS------GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 69 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
....++..+-..+...|++++|..+|++..+. +-.|+ ..++..+-..|...|+++.|...++...+.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 02466888899999999999999999997653 22332 346788889999999999999999987753
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.71 E-value=3.1e-07 Score=71.94 Aligned_cols=146 Identities=9% Similarity=0.017 Sum_probs=95.4
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CCChh----hHHHHHHHHH
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-PAPPV----AWKSIIRCCT 82 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~----~~~~li~~~~ 82 (219)
...-..+.+.|+++.|...|....+.. +.+...+..+-..|.+.|++++|...|+.... +.+.. +|..+-..+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334455667788888888888877654 22444667777788888888888888776532 10222 3777777788
Q ss_pred hcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH-HHHHhcCCc
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM-NMYAQSQNM 157 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~y~~~g~~ 157 (219)
..|++++|...|+...+.. +-+...|..+-..|...|+++.|...++...+.. +.+...+..+- ..|.. +++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHH
Confidence 8888888888887766532 2234577777777788888888888877765553 23445555555 44443 467
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.67 E-value=1.1e-06 Score=65.16 Aligned_cols=149 Identities=7% Similarity=-0.062 Sum_probs=121.6
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+..+|..+=..|.+.|++++|...|++.. .|.+..+|..+-..|.+.|++++|...+....... +-+...+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56788889899999999999999998764 34378899999999999999999999999876542 2234566667778
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeee
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVE 193 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~ 193 (219)
+...++++.+...+....+.. +.+...+..+-.+|.+.|++ ++|.+.|++.. .|++...
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~------------------~~A~~~~~~~l~~~p~~~~~ 143 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEH------------------DKAIEAYEKTISIKPGFIRA 143 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCc------------------hhHHHHHHHHHHhcchhhhH
Confidence 888999999999999987765 34677888899999999999 99999999766 3332667
Q ss_pred hhHHHHHHhhhhH
Q 041894 194 LSSGLAGCNKFEK 206 (219)
Q Consensus 194 ~n~ll~~~~~~~~ 206 (219)
|..+-..|.+.|+
T Consensus 144 ~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 144 YQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 8888888887775
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.66 E-value=6.2e-07 Score=70.23 Aligned_cols=150 Identities=7% Similarity=-0.076 Sum_probs=118.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
..++..+-..+.+.|+++.|...++...+.+-.|+ ...|..+-..|.+.|++++|...|+... .|.+..+|..+-.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 116 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 34777788899999999999999999998442222 3348888899999999999999998764 3326789999999
Q ss_pred HHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 80 CCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
.|...|++++|...|++..+. .|+. ..|..+-..+-..++++.|...++...+.. +.+...+..+-.++...|+
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCc
Confidence 999999999999999988765 4544 455555524445569999999999988875 3346777778888888887
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.65 E-value=8.9e-07 Score=74.44 Aligned_cols=152 Identities=5% Similarity=-0.049 Sum_probs=127.8
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC-HHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL-VHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..|+.+-..+.+.|+++.|...+++.++.. +-+...|+.+-..+.+.|+ +++|+..|+... .|.+..+|+.+-..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456667777888999999999999999875 4467888999999999997 999999999865 343788999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh-cCCchh
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ-SQNMDM 159 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~-~g~~~~ 159 (219)
...|++++|...|+..++. .| +...|..+-.++.+.|++++|...++...+.. ..+...|+.+-.+|.+ .|..+.
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998864 45 45688888889999999999999999998876 3467888888888998 677644
Q ss_pred H
Q 041894 160 H 160 (219)
Q Consensus 160 ~ 160 (219)
+
T Consensus 254 A 254 (382)
T 2h6f_A 254 A 254 (382)
T ss_dssp H
T ss_pred H
Confidence 3
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.64 E-value=1.6e-06 Score=68.36 Aligned_cols=175 Identities=13% Similarity=-0.004 Sum_probs=134.3
Q ss_pred hHHHHHHhCccc----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHH
Q 041894 5 KTLINLLKNPVS----IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKS 76 (219)
Q Consensus 5 ~~~~~ll~~~~~----~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 76 (219)
.++..+-..+.. .++++.|...|.+..+.+ +...+..+-..|.+ .+++++|...|+.....++..++..
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 115 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCAS 115 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHH
Confidence 445555556666 899999999999998886 67778888888888 9999999999987654337788888
Q ss_pred HHHHHHh----cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 77 IIRCCTQ----NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 77 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+-..|.. .+++++|...|+...+.+ +...+..+-..|.. .++.++|...++...+.+ +...+..+-
T Consensus 116 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 189 (273)
T 1ouv_A 116 LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAG 189 (273)
T ss_dssp HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 8899998 899999999999988765 44566666677776 889999999999887765 356677778
Q ss_pred HHHHh----cCCchhH--HHHH------------hhhhccC----CcchhhHHHHhhcCCCC
Q 041894 149 NMYAQ----SQNMDMH--IYDR------------FQGFGFN----GGREASVHEVLDKIPER 188 (219)
Q Consensus 149 ~~y~~----~g~~~~~--~~~~------------~~~~~~~----~g~~~~a~~l~~~m~~~ 188 (219)
..|.. .++++.+ .|+. +.....+ .|+.++|.+.|++..+.
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 88888 8888877 3443 2222234 77888888888876543
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.60 E-value=4.4e-07 Score=78.23 Aligned_cols=160 Identities=8% Similarity=-0.020 Sum_probs=136.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc---------CCHHHHHHHHHhcC--CCCChh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF---------NLVHDSLCLLDTLK--TPAPPV 72 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~---------g~~~~A~~~~~~m~--~~~~~~ 72 (219)
..+|..+-..+.+.|+++.|...|++..+.. |+...+..+-..|... |++++|...|++.. .|.+..
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 5678888889999999999999999998764 7778889999999999 99999999998764 342788
Q ss_pred hHHHHHHHHHhc--------CChhHHHHHHHHhHhCCCCC----CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc
Q 041894 73 AWKSIIRCCTQN--------GLLVESLTCFVRMIGSGVYP----DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140 (219)
Q Consensus 73 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 140 (219)
.|..+-.+|... |++++|...|++..+. .| +...|..+-..|...|++++|...++...+.. +.+
T Consensus 215 ~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 291 (474)
T 4abn_A 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 999999999998 9999999999998764 45 56788899999999999999999999988875 335
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 141 LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
...+..+-.++...|++ ++|.+.+.+++
T Consensus 292 ~~a~~~l~~~~~~lg~~------------------~eAi~~~~~~~ 319 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRL------------------TSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHHHHH------------------HHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHH------------------HHHHHHhcccc
Confidence 66788888999999999 77777666654
No 60
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.56 E-value=2.5e-06 Score=71.63 Aligned_cols=180 Identities=8% Similarity=-0.032 Sum_probs=143.2
Q ss_pred hhHHHHHHhCccccCC-hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKT-KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~-~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
..+|+.+-..+.+.|+ ++.|...|++.++.. +-+...|+.+=..+.+.|++++|+..|+... .|.+..+|..+-.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 5677778888889996 999999999999876 4477889999999999999999999998865 34378999999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhc-ccChhhH-----HHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTL-LVDFRFG-----ESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
+.+.|++++|+..|++.++. .| +...|+.+-..+.+ .|..+.| ...+....+.. .-+...|+.+-.+|.+
T Consensus 210 ~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD 286 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHc
Confidence 99999999999999998874 45 45678888888888 5655777 46677776665 3357788888888988
Q ss_pred cC--CchhHHHHHhhhhccCCcchhhHHHHhhcCC-CCCCeeehhHHHHHHhhhh
Q 041894 154 SQ--NMDMHIYDRFQGFGFNGGREASVHEVLDKIP-ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 154 ~g--~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~-~~~~~~~~n~ll~~~~~~~ 205 (219)
.| ++ ++|.+++.++. .++....+..+...|.+.|
T Consensus 287 ~g~~~~------------------~~a~~~~~~~~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 287 RGLSKY------------------PNLLNQLLDLQPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TCGGGC------------------HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred cCccch------------------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 88 57 88888888772 1221456777888887764
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.51 E-value=2.8e-06 Score=65.11 Aligned_cols=151 Identities=9% Similarity=-0.043 Sum_probs=122.0
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
|+..|...=..+.+.|+++.|...|++..+..-+++...+..+-.+|.+.|++++|...|+... .|.+..+|..+-..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 4566777777888999999999999999988754777888778889999999999999998764 34256789999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCc--------ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc---HHHHHHHHH
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDH--------NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD---LYTNNALMN 149 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~ 149 (219)
|...|++++|...|++..+. .|+. ..|..+-..+...|+++.|...++...+.. |+ ...+..+-.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHHH
Confidence 99999999999999997764 3543 346666677788899999999999987753 44 567777777
Q ss_pred HHHhcCCc
Q 041894 150 MYAQSQNM 157 (219)
Q Consensus 150 ~y~~~g~~ 157 (219)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 62
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.48 E-value=6.1e-06 Score=66.20 Aligned_cols=147 Identities=9% Similarity=-0.051 Sum_probs=114.9
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH-HHHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS-IIRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~-li~~~~~ 83 (219)
+..+-..+.+.|+++.|...|.+..+.. +-+...+..+-..|.+.|++++|...++... .| +...... ..-.+..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHHHHh
Confidence 3444456678899999999999998775 4467788888899999999999999999886 35 4433222 2234666
Q ss_pred cCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCc
Q 041894 84 NGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~ 157 (219)
.++.++|...|++..+. .| +...+..+-..+...|++++|...+..+.+..... +...+..|...|...|+.
T Consensus 198 ~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred hcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 77888899888887664 35 45678888899999999999999999988876432 367899999999999999
No 63
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.48 E-value=3.9e-06 Score=72.83 Aligned_cols=168 Identities=8% Similarity=-0.024 Sum_probs=124.3
Q ss_pred cCChh-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh-hhHHHHHHHHHhcCC
Q 041894 17 IKTKS-------QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP-VAWKSIIRCCTQNGL 86 (219)
Q Consensus 17 ~~~~~-------~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~-~~~~~li~~~~~~g~ 86 (219)
.|+++ .|..+|++..+.-.+.+...|..+...+.+.|++++|..+|+... .|.+. ..|..+...+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68877 889999988763334468899999999999999999999998764 34133 589999999999999
Q ss_pred hhHHHHHHHHhHhCCCCCC-cccHHHHHHH-HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHH
Q 041894 87 LVESLTCFVRMIGSGVYPD-HNVFPSVLKS-CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~ 164 (219)
+++|..+|+.-.+. .|+ ...|...... +...|+.+.|..+++...+.. +.+...|..++..+.+.|+.
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~------- 441 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED------- 441 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCH-------
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCH-------
Confidence 99999999998764 343 2222221111 235799999999999877764 34578899999999999999
Q ss_pred hhhhccCCcchhhHHHHhhcCCCCC--Cee----ehhHHHHHHhhhh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPERN--GNV----ELSSGLAGCNKFE 205 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~~~--~~~----~~n~ll~~~~~~~ 205 (219)
++|+.+|++....+ .+. .|...+.-..+.|
T Consensus 442 -----------~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 442 -----------NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp -----------HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred -----------hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999998765321 022 4655555555445
No 64
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.46 E-value=3e-06 Score=74.28 Aligned_cols=148 Identities=8% Similarity=-0.054 Sum_probs=103.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCF 94 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 94 (219)
.|++++|...+++..+.. +.+...|..+-..|.+.|++++|...|++.. .|.+..+|..+-..|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467888988888887653 3356788888889999999999999998754 3326778888999999999999999999
Q ss_pred HHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc---CCchhHHHHHhhhhcc
Q 041894 95 VRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS---QNMDMHIYDRFQGFGF 170 (219)
Q Consensus 95 ~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~---g~~~~~~~~~~~~~~~ 170 (219)
++..+. .|+ ...+..+-..+.+.|++++|.+.++...+.. ..+...+..+..+|... |+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~------------- 144 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL------------- 144 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH-------------
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH-------------
Confidence 987764 344 5678888888999999999999999987775 34567888888889888 777
Q ss_pred CCcchhhHHHHhhcCC
Q 041894 171 NGGREASVHEVLDKIP 186 (219)
Q Consensus 171 ~~g~~~~a~~l~~~m~ 186 (219)
++|.+.+++..
T Consensus 145 -----~~A~~~~~~al 155 (568)
T 2vsy_A 145 -----DVLSAQVRAAV 155 (568)
T ss_dssp -----HHHHHHHHHHH
T ss_pred -----HHHHHHHHHHH
Confidence 77777776654
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.45 E-value=6.2e-07 Score=70.04 Aligned_cols=143 Identities=15% Similarity=0.144 Sum_probs=110.3
Q ss_pred cccCChhHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------CCCChhhHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKT-------LEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----------TPAPPVAWKSI 77 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~-------g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----------~~~~~~~~~~l 77 (219)
...|+++.|..+|++..+. ..+....++..+-..|...|++++|...+++.. .|....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877653 112345678889999999999999999988753 11034678899
Q ss_pred HHHHHhcCChhHHHHHHHHhHhC------CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh------CCCc-cHHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGS------GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL------GVDL-DLYT 143 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~ 143 (219)
-..|...|++++|...|.+..+. .-.| ...++..+-..|...|+++.|...++...+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999997643 1123 3467888889999999999999999997765 2123 4678
Q ss_pred HHHHHHHHHhcCCc
Q 041894 144 NNALMNMYAQSQNM 157 (219)
Q Consensus 144 ~~~ll~~y~~~g~~ 157 (219)
+..+-.+|.+.|++
T Consensus 172 ~~~la~~~~~~g~~ 185 (283)
T 3edt_B 172 KNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCH
Confidence 88899999999999
No 66
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.40 E-value=4.1e-06 Score=61.92 Aligned_cols=155 Identities=9% Similarity=0.001 Sum_probs=116.0
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH-HHhc
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC-CTQN 84 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~-~~~~ 84 (219)
...-..+.+.|+++.|...|++..+.. +.+...+..+-..|.+.|++++|...|+... .| +...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence 344456778899999999999887654 4467788889999999999999999999876 34 44333322111 1222
Q ss_pred CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCchhHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
+...+|...|++..+. .|+ ...+..+-..+...|++++|...+....+....+ +...+..+..+|...|+.
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~----- 160 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG----- 160 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS-----
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC-----
Confidence 3344578888887653 464 5678888889999999999999999988876543 466889999999999999
Q ss_pred HHhhhhccCCcchhhHHHHhhc
Q 041894 163 DRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
++|...|++
T Consensus 161 -------------~~A~~~y~~ 169 (176)
T 2r5s_A 161 -------------NAIASKYRR 169 (176)
T ss_dssp -------------CHHHHHHHH
T ss_pred -------------CcHHHHHHH
Confidence 777777764
No 67
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.39 E-value=1e-05 Score=54.93 Aligned_cols=111 Identities=10% Similarity=0.032 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...+..+-..+.+.|++++|...|.+.. .|.+..+|..+...+...|++++|..+|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4556666667777777777777776653 22155667777777777777777777777766532 22445666677777
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
...|+++.|...++...+... .+...+..+-.++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 777777777777777666542 2333444443333
No 68
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.39 E-value=1.3e-05 Score=60.47 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=86.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 121 (219)
+..+-..+.+.|++++|...|.+...+ +..+|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344555677788888888888887777 78888888888888888888888888866542 2244567777788888888
Q ss_pred hhhHHHHHHHHHHhCCC--------------c-cHHHHHHHHHHHHhcCCc
Q 041894 122 FRFGESVHACIIRLGVD--------------L-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~--------------~-~~~~~~~ll~~y~~~g~~ 157 (219)
++.|...++...+.... | ....+..+-.+|.+.|++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 88888888887764321 1 236788888999999999
No 69
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.38 E-value=3e-05 Score=59.59 Aligned_cols=162 Identities=14% Similarity=0.047 Sum_probs=118.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChh---hHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPV---AWKSI 77 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~---~~~~l 77 (219)
..+-..-..+.+.|+++.|...|+.+.+..- .| ....+..+-.+|.+.|++++|...|+.+. .|.+.. ++-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3444555667889999999999999987642 22 23567778889999999999999999864 341222 33333
Q ss_pred HHHHHh------------------cCChhHHHHHHHHhHhCCCCCCcc-cH-----------------HHHHHHHhcccC
Q 041894 78 IRCCTQ------------------NGLLVESLTCFVRMIGSGVYPDHN-VF-----------------PSVLKSCTLLVD 121 (219)
Q Consensus 78 i~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~ll~~~~~~g~ 121 (219)
-.++.. .|++++|...|++..+. -|+.. .+ -.+-..+.+.|+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 333332 57899999999998865 36543 22 133456778899
Q ss_pred hhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 122 FRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++.|...++.+.+.-.... ...+..+..+|.+.|+. ++|.+.++.+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~------------------~~A~~~~~~l~ 211 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN------------------AQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc------------------HHHHHHHHHHH
Confidence 9999999999887753321 35688889999999999 99999998765
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.37 E-value=1.2e-05 Score=62.94 Aligned_cols=173 Identities=10% Similarity=-0.006 Sum_probs=123.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCC---ChhhHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS---RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPA---PPVAWK 75 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~---~~~~~~ 75 (219)
...+-..-..+.+.|+++.|...|..+.+.. +.+ ...+..+-.+|.+.|++++|...|+... .|. ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444455556778999999999999998764 223 5677888889999999999999998864 231 134566
Q ss_pred HHHHHHHh--------cCChhHHHHHHHHhHhCCCCCCc-ccH-----------------HHHHHHHhcccChhhHHHHH
Q 041894 76 SIIRCCTQ--------NGLLVESLTCFVRMIGSGVYPDH-NVF-----------------PSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 76 ~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~t~-----------------~~ll~~~~~~g~~~~a~~~~ 129 (219)
.+-.++.. .|++++|...|++..+. .|+. ... -.+-..|.+.|+++.|...+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 77788888 99999999999998764 3543 333 34467788899999999999
Q ss_pred HHHHHhCCCc--cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 130 ACIIRLGVDL--DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 130 ~~m~~~g~~~--~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
+...+..... ....+..+-.+|.+.|+.+. ...+.|+.++|.+.|++..+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~--------~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSV--------RARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSC--------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccch--------hhcccchHHHHHHHHHHHHH
Confidence 9988775332 34567777788887622200 00011222999999988763
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.37 E-value=7.5e-06 Score=62.36 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=109.8
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCCcHHHHHH----------------HHHHHhhcCCHHHHHHHHHhcC--CCCChhh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISR----------------LLFIYNNFNLVHDSLCLLDTLK--TPAPPVA 73 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~----------------ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~ 73 (219)
..+.+.|+++.|...|.+..+.. +-+...|.. +-..|.+.|++++|...|+... .|.+..+
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 35568899999999999998764 223445555 7788999999999999998764 3437889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChh--hHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFR--FGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
|..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|..+ .+...+.... ...|....+..+-.+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHH
Confidence 999999999999999999999998764 465 456666666666555433 3333344332 223333333334455
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
+...|++ ++|.+.|++..+.+
T Consensus 167 ~~~~~~~------------------~~A~~~~~~al~l~ 187 (208)
T 3urz_A 167 KLFTTRY------------------EKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHTH------------------HHHHHHHHHHTTTS
T ss_pred HHHccCH------------------HHHHHHHHHHHHhC
Confidence 6667888 99999999877654
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.37 E-value=6.1e-06 Score=74.85 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=121.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~ 114 (219)
+...|+.|=..|.+.|++++|+..|++.. .|.+..+|+.+=..|.+.|++++|...|++..+. .|+ ...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45688999999999999999999998754 4436889999999999999999999999997763 565 468888999
Q ss_pred HHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC--CCCCee
Q 041894 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNV 192 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~ 192 (219)
.+.+.|++++|.+.++...+.. .-+...|+.|-.+|.+.|++ ++|.+.|++.. .++...
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~------------------~eAi~~~~~Al~l~P~~~~ 146 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNI------------------PEAIASYRTALKLKPDFPD 146 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCSCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHhCCCChH
Confidence 9999999999999999988875 34577899999999999999 88888888655 333255
Q ss_pred ehhHHHHHHhhhh
Q 041894 193 ELSSGLAGCNKFE 205 (219)
Q Consensus 193 ~~n~ll~~~~~~~ 205 (219)
.|..+...|.+.|
T Consensus 147 a~~~L~~~l~~~g 159 (723)
T 4gyw_A 147 AYCNLAHCLQIVC 159 (723)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHhhhhhHHHhcc
Confidence 6776777766665
No 73
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.37 E-value=5.8e-06 Score=67.37 Aligned_cols=152 Identities=7% Similarity=-0.030 Sum_probs=95.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC-CC-----hhhHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-AP-----PVAWK 75 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~-----~~~~~ 75 (219)
+..++..+-.++...|+++.|.+++.+.+..+- .-+...+..++..+.+.|+++.|.+.++.|..- +| -.+..
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 344445566677778888888888877765553 235667777888888888888888888777622 02 23344
Q ss_pred HHHHH--HHh--cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC---------CCccHH
Q 041894 76 SIIRC--CTQ--NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG---------VDLDLY 142 (219)
Q Consensus 76 ~li~~--~~~--~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g---------~~~~~~ 142 (219)
-|..+ ... .+++++|+.+|+++.+. .|+..+-..+++++.+.|++++|+..++.+.+.- -+.|..
T Consensus 179 ~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 179 NLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 44444 222 23788888888887654 3554455566667778888888888887665431 023455
Q ss_pred HHHHHHHHHHhcCC
Q 041894 143 TNNALMNMYAQSQN 156 (219)
Q Consensus 143 ~~~~ll~~y~~~g~ 156 (219)
+...+|..+.-.|+
T Consensus 257 ~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 257 FLANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCh
Confidence 55444444444454
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.36 E-value=2.5e-05 Score=58.84 Aligned_cols=129 Identities=9% Similarity=-0.087 Sum_probs=104.8
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
+..+-..+.+.|+++.|...|.+. +.|+...|..+-..|.+.|++++|...|+... .|.+..+|..+-..|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 344455677889999999999876 46788999999999999999999999998764 332678899999999999
Q ss_pred CChhHHHHHHHHhHhCC--------------CCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc
Q 041894 85 GLLVESLTCFVRMIGSG--------------VYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL 139 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g--------------~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 139 (219)
|++++|...|+...+.. ..|+ ...+..+-.++...|+++.|...++...+.....
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999987642 1111 1567788888999999999999999988765433
No 75
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.35 E-value=5.1e-06 Score=66.69 Aligned_cols=164 Identities=5% Similarity=-0.116 Sum_probs=124.5
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc----CCCCc-HHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----hh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT----LEPNS-RFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----PV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~~ 72 (219)
.|......+...|+++.|...|.+..+. |-.++ ..+|+.+-..|.+.|++++|...++... ..++ ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666777788899999999999888664 32222 4688899999999999999999887653 1112 35
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH-----
Q 041894 73 AWKSIIRCCTQN-GLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL----- 141 (219)
Q Consensus 73 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----- 141 (219)
+|+.+-..|... |++++|...|++-.+- +-.+. ..++..+-..+.+.|++++|...++...+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 788888999996 9999999999986542 11111 246778888999999999999999998876544322
Q ss_pred -HHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 142 -YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 142 -~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
..|..+..+|...|++ ++|.+.|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~------------------~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDA------------------VAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCH------------------HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHh
Confidence 1567778889999999 888888887664
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.34 E-value=1.8e-05 Score=71.25 Aligned_cols=166 Identities=10% Similarity=-0.053 Sum_probs=133.6
Q ss_pred cccCChhHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc
Q 041894 15 VSIKTKSQAKQLHAQIF--------KTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~ 84 (219)
...|++++|...+++.. +. -+.+...+..+-..|.+.|++++|...|++.. .|.+..+|..+=.++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 22 24456778888889999999999999998865 342778899999999999
Q ss_pred CChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYD 163 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~ 163 (219)
|++++|...|++..+. .| +...|..+-.++.+.|++++ ...++...+.. ..+...|..+-.+|.+.|++
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~------ 550 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR------ 550 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH------
Confidence 9999999999997764 45 45678888889999999999 99999988876 34567888999999999999
Q ss_pred HhhhhccCCcchhhHHHHhhcCCCCC--CeeehhHHHHHHhh
Q 041894 164 RFQGFGFNGGREASVHEVLDKIPERN--GNVELSSGLAGCNK 203 (219)
Q Consensus 164 ~~~~~~~~~g~~~~a~~l~~~m~~~~--~~~~~n~ll~~~~~ 203 (219)
++|.+.|++..+.+ ....|..+-.+|..
T Consensus 551 ------------~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 551 ------------VGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp ------------HHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred ------------HHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 99999999987543 13445555555544
No 77
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.33 E-value=1.1e-05 Score=70.00 Aligned_cols=150 Identities=3% Similarity=-0.034 Sum_probs=116.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhhcCCHHHHHHHHHhcCC-CC-ChhhHHHHH-
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--RFLISRLLFIYNNFNLVHDSLCLLDTLKT-PA-PPVAWKSII- 78 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-~~-~~~~~~~li- 78 (219)
...|..+...+.+.|+++.|..+|+.+.+. .|+ ...|..+...+.+.|++++|+.+|+.... ++ +...|....
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 567777888888899999999999999985 443 35899999999999999999999987642 20 222222221
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC-CCcc--HHHHHHHHHHHHhc
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG-VDLD--LYTNNALMNMYAQS 154 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~~~~ll~~y~~~ 154 (219)
-.+...|++++|..+|+...+. .| +...|..++....+.|+.+.|+.+++...... ..|+ ...|...+....+.
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 1234689999999999987654 35 45788899999999999999999999987764 2333 55888888888888
Q ss_pred CCc
Q 041894 155 QNM 157 (219)
Q Consensus 155 g~~ 157 (219)
|+.
T Consensus 477 G~~ 479 (530)
T 2ooe_A 477 GDL 479 (530)
T ss_dssp SCH
T ss_pred CCH
Confidence 998
No 78
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=1e-05 Score=54.85 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=83.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
..+|..+...+.+.|+++.|..++.++.+.. +.+..++..+...+.+.|++++|...|+.+. .|.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4677888888999999999999999998775 4467788999999999999999999998764 332778899999999
Q ss_pred HhcCChhHHHHHHHHhHhC
Q 041894 82 TQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~ 100 (219)
...|++++|...|++..+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.31 E-value=4.2e-05 Score=58.42 Aligned_cols=149 Identities=9% Similarity=-0.143 Sum_probs=115.5
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---C-CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK---T-PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPS 111 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 111 (219)
.|+..+..+=..+.+.|++++|...|+... . + +...+..+-.++...|++++|...|+...+. .|+ ...|..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHH
Confidence 355677777888999999999999998754 3 5 7788878999999999999999999998764 454 467888
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCccH-------HHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDL-------YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
+-..+...|+++.|...++...+... .+. ..|..+=..+.+.|++ ++|.+.|++
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~------------------~~A~~~~~~ 142 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNI------------------EKAEENYKH 142 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccH------------------HHHHHHHHH
Confidence 88999999999999999999887653 233 3455556666777777 999999998
Q ss_pred CCCCC----CeeehhHHHHHHhhhhHh
Q 041894 185 IPERN----GNVELSSGLAGCNKFEKR 207 (219)
Q Consensus 185 m~~~~----~~~~~n~ll~~~~~~~~~ 207 (219)
..+.+ ....|..+-..|...|+.
T Consensus 143 al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 143 ATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 77544 134566666666666654
No 80
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.26 E-value=2.3e-05 Score=62.79 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=119.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhhc-CCHHHHHHHHHhcCC--C--CC---
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NS----RFLISRLLFIYNNF-NLVHDSLCLLDTLKT--P--AP--- 70 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~----~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~--~--~~--- 70 (219)
..+|+.+-..+.+.|+++.|...+++..+.... .+ ..+++.+-..|.+. |++++|...|++... | ++
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 357888888999999999999999988764311 11 35788888899996 999999999987531 1 02
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc------cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH--
Q 041894 71 -PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN------VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL-- 141 (219)
Q Consensus 71 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~-- 141 (219)
..+|+.+-..+.+.|++++|...|++..+..-..... .|..+..++...|+.+.|...++...+. .|+.
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC
Confidence 3568889999999999999999999987653222221 4566677788899999999999886543 3332
Q ss_pred ----HHHHHHHHHHH--hcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 142 ----YTNNALMNMYA--QSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 142 ----~~~~~ll~~y~--~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
..+..|+.+|. ..+++ ++|.+.|+++...+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~------------------~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQL------------------SEHCKEFDNFMRLD 270 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTH------------------HHHHHHHTTSSCCC
T ss_pred cHHHHHHHHHHHHHHcCCHHHH------------------HHHHHHhccCCccH
Confidence 23444556554 33445 99999999887666
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.25 E-value=1.2e-05 Score=65.53 Aligned_cols=142 Identities=13% Similarity=0.010 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP----APPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+...|+++.+.+ .++..++..+-..+...|++++|++++.+-..+ .+...+..+++.+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566665555 556666667778999999999999999876221 256788899999999999999999999997
Q ss_pred hCCCCC-----CcccHHHHHHHHhc--cc--ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhc
Q 041894 99 GSGVYP-----DHNVFPSVLKSCTL--LV--DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFG 169 (219)
Q Consensus 99 ~~g~~p-----~~~t~~~ll~~~~~--~g--~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~ 169 (219)
+. .| +..+..-+..++.. .| +...|..+|+++.... |+..+-..|+.++.+.|++
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~------------ 227 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNI------------ 227 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCH------------
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCH------------
Confidence 64 57 35666667767433 34 8999999999986654 5544555666689999999
Q ss_pred cCCcchhhHHHHhhcCCC
Q 041894 170 FNGGREASVHEVLDKIPE 187 (219)
Q Consensus 170 ~~~g~~~~a~~l~~~m~~ 187 (219)
++|++.++.+.+
T Consensus 228 ------~eAe~~L~~l~~ 239 (310)
T 3mv2_B 228 ------AEAQGIVELLLS 239 (310)
T ss_dssp ------HHHHHHHHHHHS
T ss_pred ------HHHHHHHHHHHH
Confidence 999999986543
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.23 E-value=1e-05 Score=58.39 Aligned_cols=139 Identities=6% Similarity=-0.123 Sum_probs=102.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
+.+.|++++|...+....... +-+...+-.+=..|.+.|++++|.+.|+... .|.+..+|..+-..|.+.|++++|.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 445677888888777765432 1133455667778999999999999998764 3437889999999999999999999
Q ss_pred HHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHH-HHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 92 TCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESV-HACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 92 ~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
..|+...+. .|+ ...|..+-..|.+.|+.+++... ++...+.. +-+..+|...-..+.+.|+
T Consensus 86 ~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999998763 565 46788888889999998876655 57766654 2356667766666666654
No 83
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=4.8e-05 Score=51.88 Aligned_cols=117 Identities=9% Similarity=-0.064 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
+...+..+-..+...|++++|...|+... .|.+...|..+-..+...|++++|...|....+. .| +...+..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 44566777778888888888888887653 2326677888888888888888888888887654 34 3556777777
Q ss_pred HHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 115 SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.+...|+++.|...++...+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888877765 23566777777777777765
No 84
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.20 E-value=3.6e-05 Score=73.57 Aligned_cols=161 Identities=7% Similarity=0.083 Sum_probs=88.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~ 83 (219)
...|..+..+|.+.|++++|.+.+...++.. ++....+-+..+|++.+++++...+. ..+ +...|..+=..|..
T Consensus 1134 ~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~-n~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A 1134 PSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGP-NNAHIQQVGDRCYD 1207 (1630)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCC-CHHHHHHHHHHHHh
Confidence 4455666666667777777776666655543 23333334666666666666444332 244 44555556666666
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHH--
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHI-- 161 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~-- 161 (219)
.|++++|..+|... ..|..+..++.+.|+++.|.+.+..- .+..+|.-+-.++...|+++.|+
T Consensus 1208 eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~c 1272 (1630)
T 1xi4_A 1208 EKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMC 1272 (1630)
T ss_pred cCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 66666666666552 36666666666666666666665543 22344444444444444444331
Q ss_pred ----------HHHhhhhccCCcchhhHHHHhhcC
Q 041894 162 ----------YDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 162 ----------~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
++.+..|+.+.|.+++|.++++.-
T Consensus 1273 gl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1273 GLHIVVHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122333445566666666666544
No 85
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.20 E-value=4.1e-05 Score=54.90 Aligned_cols=125 Identities=9% Similarity=-0.027 Sum_probs=79.1
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..|..+-..+...|+++.|...|....+.. +.+..++..+-..+.+.|++++|...|.... .|.+..+|..+-..+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345555556667777777777777776654 3356667777777777777777777776543 2315666777777777
Q ss_pred hcCChhHHHHHHHHhHhCCCCCC-cccH--HHHHHHHhcccChhhHHHHHHHH
Q 041894 83 QNGLLVESLTCFVRMIGSGVYPD-HNVF--PSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~--~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
..|++++|...|++..+. .|+ ...+ -.....+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777776543 232 2233 22333355667777777666554
No 86
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=5.1e-05 Score=54.39 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
...+..+-..+...|++++|...|.... .|.+..+|..+-..+...|++++|...|.+..+.. +.+...|..+-..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3456777778899999999999998754 33277889999999999999999999999977642 23456788888899
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHH--HHHHHHHHhcCCc
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTN--NALMNMYAQSQNM 157 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~y~~~g~~ 157 (219)
...|+++.|...++...+.... +...+ -.+...+.+.|++
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877532 33344 4444557778888
No 87
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.16 E-value=2.5e-05 Score=53.39 Aligned_cols=116 Identities=9% Similarity=0.065 Sum_probs=92.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-..+...|+++.|...+.+..+.. +.+...+..+-..|...|++++|...+.... .|.+...|..+-..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567777788889999999999999998765 4467888899999999999999999998754 332678899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccCh
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDF 122 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 122 (219)
...|++++|...|++..+. .| +...+..+...+.+.|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 9999999999999997764 34 345565666666655543
No 88
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=3.8e-05 Score=52.82 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
+.+...+..+-..+.+.|++++|...|++.. .|.+..+|..+-..+...|++++|...|++..+.. +.+...+..+-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 3455567777777888888888888887643 22256777777788888888888888888766532 22345677777
Q ss_pred HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcC
Q 041894 114 KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 114 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g 155 (219)
..+.+.|+++.|...++...+.. +.+...+..+-.++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77788888888888888776654 223455555555655544
No 89
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.11 E-value=0.00016 Score=57.70 Aligned_cols=152 Identities=10% Similarity=-0.103 Sum_probs=109.2
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCc-H----HHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----h
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS-R----FLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP----P 71 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~-~----~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~----~ 71 (219)
.+...+..+...|+++.|...+....+..-... . ..+..+-..+...|++++|...+.+.- .. + .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-CTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-chHHHH
Confidence 344566778889999999999988776542211 1 223345556778889999999987642 11 2 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC-CCCCC-----cccHHHHHHHHhcccChhhHHHHHHHHHHhC----CCc-c
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-GVYPD-----HNVFPSVLKSCTLLVDFRFGESVHACIIRLG----VDL-D 140 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~-~ 140 (219)
.+|+.+-..|...|++++|...|++..+. ...|+ ..+|..+-..|...|++++|...++...+.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999987621 11222 1578888889999999999999988865432 111 2
Q ss_pred HHHHHHHHHHHHhcCCch
Q 041894 141 LYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~~~ 158 (219)
..+|..+-.+|.+.|+.+
T Consensus 236 ~~~~~~lg~~y~~~g~~~ 253 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcH
Confidence 667888889999999993
No 90
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.07 E-value=6.1e-05 Score=60.16 Aligned_cols=149 Identities=9% Similarity=-0.163 Sum_probs=108.5
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcC-CCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCh----hh
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRF----LISRLLFIYNNFNLVHDSLCLLDTLK-----TPAPP----VA 73 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~----~~ 73 (219)
...+..+...|+++.|..+++...+.. ..|+.. .+..+-..|...+++++|...|.+.- .+ +. .+
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~ 157 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-CTTHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-cHHHHHHH
Confidence 334667788999999999999988743 233322 33456667778889999999988753 22 32 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHh----C-CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCc-cHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIG----S-GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDL-DLY 142 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~ 142 (219)
|+.+-..|...|++++|..+|++..+ . +..|. ..+|..+-..|.+.|++++|...++...+. +..+ -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 89999999999999999999999773 1 22222 237788888999999999999998875533 2222 256
Q ss_pred HHHHHHHHHHhcCC-c
Q 041894 143 TNNALMNMYAQSQN-M 157 (219)
Q Consensus 143 ~~~~ll~~y~~~g~-~ 157 (219)
.|..+=.+|.+.|+ +
T Consensus 238 ~~~~lg~~~~~~g~~~ 253 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEE 253 (293)
T ss_dssp HHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHhCCcH
Confidence 78888888889994 5
No 91
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.07 E-value=5.1e-05 Score=55.62 Aligned_cols=121 Identities=8% Similarity=-0.005 Sum_probs=95.6
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH-HHhcCCh--
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC-CTQNGLL-- 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~-~~~~g~~-- 87 (219)
.+...|+++.|...+....+.. +.+...|..+-..|...|++++|...|+... .|.+...|..+-.. +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567789999999999888765 4567888999999999999999999998764 23267788888888 7788998
Q ss_pred hHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 88 VESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++|...|++..+. .|+ ...+..+-..+...|+++.|...+....+..
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999998764 354 4577778888999999999999999987765
No 92
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.07 E-value=2.1e-05 Score=58.57 Aligned_cols=142 Identities=11% Similarity=0.053 Sum_probs=100.2
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CC----ChhhHHHHHHHHHhcCC
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PA----PPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~----~~~~~~~li~~~~~~g~ 86 (219)
...|+++.|.++++.+.. .......++..+-..|...|++++|...+++... .+ ...+++.+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996655533 2224567888888899999999999999887531 10 24678888889999999
Q ss_pred hhHHHHHHHHhHhC-CCCC-C----cccHHHHHHHHhcccChhhHHHHHHHHHHhC---CCcc--HHHHHHHHHHHHhcC
Q 041894 87 LVESLTCFVRMIGS-GVYP-D----HNVFPSVLKSCTLLVDFRFGESVHACIIRLG---VDLD--LYTNNALMNMYAQSQ 155 (219)
Q Consensus 87 ~~~a~~~~~~m~~~-g~~p-~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~~~--~~~~~~ll~~y~~~g 155 (219)
+++|...|.+..+. .-.+ + ...+..+-..+...|+++.|...++...+.. -.+. ..++..+-..|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999986532 1112 2 2456777788889999999999988865331 1222 344677788899999
Q ss_pred Cc
Q 041894 156 NM 157 (219)
Q Consensus 156 ~~ 157 (219)
++
T Consensus 162 ~~ 163 (203)
T 3gw4_A 162 NL 163 (203)
T ss_dssp CH
T ss_pred CH
Confidence 99
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.06 E-value=9.2e-05 Score=59.23 Aligned_cols=150 Identities=9% Similarity=-0.146 Sum_probs=115.5
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVL 113 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 113 (219)
+.+...+..+-..+.+.|++++|...|++.- .|.+..++..+-..+...|++++|...|+..... .|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 5556667777788899999999999999864 4437788999999999999999999999987654 46543222222
Q ss_pred -HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCC
Q 041894 114 -KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNG 190 (219)
Q Consensus 114 -~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~ 190 (219)
..+...+..+.|...++...... +.+...+..|-.+|...|++ ++|.+.|++... |+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~------------------~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRN------------------EEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHCTTG
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccH------------------HHHHHHHHHHHhccccc
Confidence 22556778888888888887775 35677889999999999999 999999998763 331
Q ss_pred --eeehhHHHHHHhhhhH
Q 041894 191 --NVELSSGLAGCNKFEK 206 (219)
Q Consensus 191 --~~~~n~ll~~~~~~~~ 206 (219)
...+..+...|...|+
T Consensus 253 ~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 253 ADGQTRXTFQEILAALGT 270 (287)
T ss_dssp GGGHHHHHHHHHHHHHCT
T ss_pred ccchHHHHHHHHHHHcCC
Confidence 3467888888877774
No 94
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.05 E-value=5e-05 Score=52.23 Aligned_cols=112 Identities=9% Similarity=-0.020 Sum_probs=88.5
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...|..+-..+.+.|+++.|...|++..+.. +.+...+..+-..|...|++++|...|+... .|.+..+|..+-..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35677788888999999999999999998764 3467888999999999999999999998764 33267889999999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCT 117 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~ 117 (219)
+.+.|++++|.+.|++..+. .|+ ...+..+-..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHH
Confidence 99999999999999997653 343 234444444443
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.05 E-value=8.7e-05 Score=64.91 Aligned_cols=131 Identities=11% Similarity=0.071 Sum_probs=111.1
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...|..+-..+.+.|++++|...+++..+.. +.+...+..+-..|.+.|++++|...|++.. .|.+...|..+-..|
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5677777888899999999999999998765 4467788999999999999999999998764 342678999999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcc---cChhhHHHHHHHHHHhCC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLL---VDFRFGESVHACIIRLGV 137 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~---g~~~~a~~~~~~m~~~g~ 137 (219)
.+.|++++|.+.|++..+. .| +...+..+...+... |+.++|.+.++...+.+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 9999999999999997764 34 456788888889899 999999999999887763
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.04 E-value=1.4e-05 Score=57.71 Aligned_cols=107 Identities=4% Similarity=-0.124 Sum_probs=87.6
Q ss_pred HHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
.+.+.|++++|...+...... .+...+-.+-..|.+.|++++|.+.|++..+. .|+ ...|..+-..|.+.|+++.
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 345678899999999876532 13466777889999999999999999998764 464 5688889999999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|...++...+.. +-+...|..+-..|.+.|+.
T Consensus 84 A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 84 AVECYRRSVELN-PTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCh
Confidence 999999988875 23577888999999999999
No 97
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.00012 Score=48.91 Aligned_cols=96 Identities=11% Similarity=-0.015 Sum_probs=52.9
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...+..+-..+...|+++.|...|+...+.. +.+...+..+-..|.+.|++++|...++... .|.+...|..+-..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34455555555556666666666666655543 2244555555555666666666666655432 22144555555556
Q ss_pred HHhcCChhHHHHHHHHhHh
Q 041894 81 CTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~ 99 (219)
+...|++++|.+.|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666655543
No 98
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.04 E-value=8.5e-05 Score=61.40 Aligned_cols=148 Identities=5% Similarity=-0.104 Sum_probs=112.1
Q ss_pred CccccCChhHHHHHHHHHHHcC--CC--C-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC-----hhhHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTL--EP--N-SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP-----PVAWKSII 78 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g--~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~-----~~~~~~li 78 (219)
.+...|+++.|...|.+..+.- .. + ...++..+-..|...|+++.|...+.+.. ..++ ..+++.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 4567899999999999998642 11 1 33578888889999999999998887653 1102 35788888
Q ss_pred HHHHhcCChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh----CC-CccHHHHHHHH
Q 041894 79 RCCTQNGLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL----GV-DLDLYTNNALM 148 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll 148 (219)
..|...|++++|...|.+..+. +-.|. ..++..+-..|...|+++.|...+....+. +. .....++..+-
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 9999999999999999986532 11111 247788888999999999999999887652 33 34577888899
Q ss_pred HHHHhcCCchhH
Q 041894 149 NMYAQSQNMDMH 160 (219)
Q Consensus 149 ~~y~~~g~~~~~ 160 (219)
..|.+.|+++.|
T Consensus 272 ~~~~~~g~~~~A 283 (383)
T 3ulq_A 272 QIHYKLGKIDKA 283 (383)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHHCCCHHHH
Confidence 999999999433
No 99
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.03 E-value=2.5e-05 Score=62.06 Aligned_cols=179 Identities=10% Similarity=-0.059 Sum_probs=129.5
Q ss_pred HHHHhCccccCChhHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CC---CChhhHH
Q 041894 8 INLLKNPVSIKTKSQAKQLHAQIFKTLEPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TP---APPVAWK 75 (219)
Q Consensus 8 ~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~---~~~~~~~ 75 (219)
...=..+.+.|+++.|...|+++.+..-. + ...+..+-..|...|++++|...+++.. .+ ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 33344677889999999999999887422 3 3678888889999999999999987653 11 0246788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCC-CCCC----cccHHHHHHHHhcccC--------------------hhhHHHHHH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSG-VYPD----HNVFPSVLKSCTLLVD--------------------FRFGESVHA 130 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~~~~ 130 (219)
.+-..+...|++++|...|.+..+.. -.++ ..++..+-..+...|+ ++.|...+.
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999865421 0122 3377778888888899 899988887
Q ss_pred HHHHh----CCCc-cHHHHHHHHHHHHhcCCchhHH--HHH--------------------hhhhccCCcchhhHHHHhh
Q 041894 131 CIIRL----GVDL-DLYTNNALMNMYAQSQNMDMHI--YDR--------------------FQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 131 ~m~~~----g~~~-~~~~~~~ll~~y~~~g~~~~~~--~~~--------------------~~~~~~~~g~~~~a~~l~~ 183 (219)
...+. +-.+ ...++..+-..|...|+++.++ |+. +.....+.|+.++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 75432 2122 3457888888999999998772 222 1122346788888988888
Q ss_pred cCCC
Q 041894 184 KIPE 187 (219)
Q Consensus 184 ~m~~ 187 (219)
+..+
T Consensus 248 ~al~ 251 (338)
T 3ro2_A 248 KTLL 251 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
No 100
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.01 E-value=4.8e-05 Score=62.90 Aligned_cols=151 Identities=11% Similarity=0.088 Sum_probs=113.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCC-CC-----cHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC---
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN-----SRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP--- 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~--- 70 (219)
.+|..+=..+...|+++.|...+.+..+.-- .+ ...+++.+=..|...|++++|...|++.. .+ +
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~ 222 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK-QPQL 222 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC-ChHH
Confidence 5677777788899999999999998876421 11 23467778889999999999999987653 12 2
Q ss_pred -hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCcc
Q 041894 71 -PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLD 140 (219)
Q Consensus 71 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~ 140 (219)
..+|+.+-..|...|++++|...|++..+- +-.| ...++..+-..+.+.|+++.|...++...+. +-...
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 247888999999999999999999997651 2223 3457888889999999999999998886543 22222
Q ss_pred HHHHHHHHHHHHhcCC
Q 041894 141 LYTNNALMNMYAQSQN 156 (219)
Q Consensus 141 ~~~~~~ll~~y~~~g~ 156 (219)
...+..+-..|...|+
T Consensus 303 ~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHhCCCc
Confidence 3345667778888887
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.00 E-value=4.5e-05 Score=68.60 Aligned_cols=148 Identities=4% Similarity=-0.136 Sum_probs=117.2
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCC 81 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~ 81 (219)
...+..+-.++.+.|+++.|...|++..+.. +.+...|..+=..|.+.|++++|...|++.. .|.+...|..+-.++
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA 511 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3566667778889999999999999998875 4467788888889999999999999998864 343678899999999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
.+.|++++ .+.|++..+. .|+ ...|..+-.++.+.|++++|.+.++...+.. ..+...+..+-.+|...|+
T Consensus 512 ~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99999999 9999997764 454 4678888899999999999999999876654 2235667777777766554
No 102
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.98 E-value=1.4e-05 Score=65.79 Aligned_cols=152 Identities=12% Similarity=-0.012 Sum_probs=113.5
Q ss_pred hHHHHHHhCccccCC--------------------hhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 041894 5 KTLINLLKNPVSIKT--------------------KSQAKQLHAQIFKT----LEPN-SRFLISRLLFIYNNFNLVHDSL 59 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~--------------------~~~a~~l~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~ 59 (219)
.++..+-..+...|+ ++.|...+.+..+. +-.| ...++..+-..|...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 366667777788888 99999988877553 1111 2346788888999999999999
Q ss_pred HHHHhcC-----CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhH
Q 041894 60 CLLDTLK-----TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFG 125 (219)
Q Consensus 60 ~~~~~m~-----~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a 125 (219)
..+++.. .+ + ..+|..+-..|...|++++|...|++..+. +-.+. ..++..+-..|...|+++.|
T Consensus 208 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 286 (406)
T 3sf4_A 208 IAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 286 (406)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 9998754 22 2 247888999999999999999999986532 21111 45777888899999999999
Q ss_pred HHHHHHHHHhCC----Cc-cHHHHHHHHHHHHhcCCc
Q 041894 126 ESVHACIIRLGV----DL-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 126 ~~~~~~m~~~g~----~~-~~~~~~~ll~~y~~~g~~ 157 (219)
...+....+... .+ ...++..+-..|.+.|++
T Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 287 IDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 999888654321 11 256778888999999999
No 103
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.98 E-value=1.7e-05 Score=65.86 Aligned_cols=198 Identities=9% Similarity=-0.067 Sum_probs=140.9
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhcC-----C---CCChhhH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR----FLISRLLFIYNNFNLVHDSLCLLDTLK-----T---PAPPVAW 74 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~---~~~~~~~ 74 (219)
+..+-..+...|+++.|...|+++.+..-. +. .++..+-..|...|++++|...|++.. . +....+|
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 334445678899999999999999887422 33 478888889999999999999987653 1 1034678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccC-----------------hhhHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVD-----------------FRFGESVHACI 132 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~-----------------~~~a~~~~~~m 132 (219)
..+-..|...|++++|...|++..+. +-.| ...++..+-..|...|+ ++.|...+...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 88899999999999999999986543 1112 23477778888889999 99999888775
Q ss_pred HHh----CCC-ccHHHHHHHHHHHHhcCCchhHH--HHH--------------------hhhhccCCcchhhHHHHhhcC
Q 041894 133 IRL----GVD-LDLYTNNALMNMYAQSQNMDMHI--YDR--------------------FQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 133 ~~~----g~~-~~~~~~~~ll~~y~~~g~~~~~~--~~~--------------------~~~~~~~~g~~~~a~~l~~~m 185 (219)
.+. +-. .....+..+-..|...|+++.++ |+. +...+.+.|+.++|.+.|++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 432 221 23457888889999999998772 322 222235789999999999998
Q ss_pred CCCCC--------eeehhHHHHHHhhhh
Q 041894 186 PERNG--------NVELSSGLAGCNKFE 205 (219)
Q Consensus 186 ~~~~~--------~~~~n~ll~~~~~~~ 205 (219)
..... ...|..+-..|.+.|
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLH 317 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 84210 134555555555555
No 104
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.96 E-value=2.9e-05 Score=62.69 Aligned_cols=162 Identities=6% Similarity=-0.058 Sum_probs=112.7
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC--C-C--cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----hh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE--P-N--SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----PV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~--~-~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~~ 72 (219)
.|......+...|+++.|...|.+..+... . + -..+|+.+-..|.+.|++++|...|++.. ..++ ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 566666777888899999888887765431 1 1 13477888888899999988888887532 2112 35
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCcc-HH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLD-LY 142 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~ 142 (219)
+|+.+-..|.. |++++|...|++-.+- +-.+ -..++..+-..+.+.|+++.|...++...+. +..+. ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 67777788887 9999999999886532 2111 1356777788888999999999998886653 22222 23
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+..+..++...|++ ++|.+.|++..
T Consensus 197 ~~~~~g~~~~~~g~~------------------~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADY------------------VAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCH------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCH------------------HHHHHHHHHHh
Confidence 666677777888999 77777776644
No 105
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.96 E-value=0.00021 Score=68.42 Aligned_cols=169 Identities=9% Similarity=0.025 Sum_probs=129.7
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+.+++++|.++.++. -+..+|..+=.++.+.|++++|...|..- . |...|.-++.++.+.|++++|.++|.
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--d-D~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--D-DPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--C-ChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 568899998888755 35778899999999999999999999654 4 77889999999999999999999997
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHH------hhh
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDR------FQG 167 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~------~~~ 167 (219)
.-++.. ++....+.+..+|++.++++...... . .++...|..+=..|-..|+++.| .|+. +..
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI-----~--~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~ 1229 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI-----N--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLAS 1229 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-----h--CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHH
Confidence 655543 44444556889999998887544442 1 34556677788888899999888 3444 555
Q ss_pred hccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 168 FGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 168 ~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
.+++.|++++|.+.+++- .+ ..+|.-+-.+|...|
T Consensus 1230 tLvkLge~q~AIEaarKA--~n-~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKA--NS-TRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHhCCHHHHHHHHHHh--CC-HHHHHHHHHHHhhhh
Confidence 567889999999999876 44 567777767766555
No 106
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.96 E-value=1e-05 Score=64.30 Aligned_cols=163 Identities=12% Similarity=-0.029 Sum_probs=120.8
Q ss_pred hHHHHHHhCccccCC--------------------hhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHhhcCCHHHHH
Q 041894 5 KTLINLLKNPVSIKT--------------------KSQAKQLHAQIFKT----LEPN-SRFLISRLLFIYNNFNLVHDSL 59 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~--------------------~~~a~~l~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~A~ 59 (219)
.++..+-..+...|+ ++.|...+.+..+. +-.+ ...++..+-..|...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 366667777778888 89999888876543 2111 2346788888999999999999
Q ss_pred HHHHhcC-----CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-cccHHHHHHHHhcccChhhH
Q 041894 60 CLLDTLK-----TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPD-HNVFPSVLKSCTLLVDFRFG 125 (219)
Q Consensus 60 ~~~~~m~-----~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a 125 (219)
..+++.. .+ + ..++..+...+...|++++|...|++..+. +-.+. ..++..+-..+...|+++.|
T Consensus 204 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 204 IAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9998753 11 2 247888999999999999999999986532 11111 45677788889999999999
Q ss_pred HHHHHHHHHh----CCC-ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 126 ESVHACIIRL----GVD-LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 126 ~~~~~~m~~~----g~~-~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
...++...+. +-. ....++..+-..|.+.|++ ++|.+.|++..
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~a~ 330 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH------------------DQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh------------------HHHHHHHHHHH
Confidence 9998886543 211 1245777888999999999 88888887644
No 107
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.95 E-value=1.3e-05 Score=66.50 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCC-CCC----cccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGV-YPD----HNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
+|..+-..|...|++++|...|++..+..- .++ ...+..+-..|...|++++|...++..
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 444444455555555555555544332100 001 113444444455555555555554443
No 108
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.95 E-value=0.00018 Score=57.31 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=81.9
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRC 80 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~ 80 (219)
+...+..+-..+.+.|+++.|...|.+..+.. +.+...|..+-..|.+.|++++|...++... .|.+...|..+-.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45667777778889999999999999998874 3377888999999999999999999998865 34267889999999
Q ss_pred HHhcCChhHHHHHHHHhHh
Q 041894 81 CTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~ 99 (219)
|...|++++|...|....+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998654
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.95 E-value=9e-05 Score=53.83 Aligned_cols=119 Identities=8% Similarity=-0.084 Sum_probs=91.9
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
...+.+.+...+.++++.. +.| +...+..+=..+.+.|++++|...|+... .|.+...|..+=.+|..
T Consensus 12 ~~~l~~~~~~~~~l~~al~---------l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 12 STAVIDAINSGATLKDINA---------IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI 82 (151)
T ss_dssp HHHHHHHHHTSCCTGGGCC---------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHhC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3455555555555555432 344 34466777778899999999999998865 44378889999999999
Q ss_pred cCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 84 NGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.|++++|...|+...+- .| +...|..+-.+|.+.|++++|...++...+..
T Consensus 83 ~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp TTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999998764 35 45678888899999999999999999988875
No 110
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.94 E-value=5.5e-05 Score=62.15 Aligned_cols=182 Identities=10% Similarity=-0.056 Sum_probs=132.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CC---CChh
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TP---APPV 72 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~---~~~~ 72 (219)
..+...=..+.+.|+++.|...|++..+..- .+ ..++..+-..|...|++++|...|++.. .. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444555677889999999999999988742 23 3567888889999999999999987642 11 0246
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCC----cccHHHHHHHHhcccC--------------------hhhHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPD----HNVFPSVLKSCTLLVD--------------------FRFGES 127 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~--------------------~~~a~~ 127 (219)
+|..+-..|...|++++|...|.+..+.. -.++ ..++..+-..|...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 78888899999999999999998865421 0112 3477788888889999 999998
Q ss_pred HHHHHHHh----CCCc-cHHHHHHHHHHHHhcCCchhHH--HHH--------------------hhhhccCCcchhhHHH
Q 041894 128 VHACIIRL----GVDL-DLYTNNALMNMYAQSQNMDMHI--YDR--------------------FQGFGFNGGREASVHE 180 (219)
Q Consensus 128 ~~~~m~~~----g~~~-~~~~~~~ll~~y~~~g~~~~~~--~~~--------------------~~~~~~~~g~~~~a~~ 180 (219)
.+....+. +-.+ ...++..+-..|...|+++.++ |+. +.....+.|+.++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 88775432 2112 3457888889999999998772 322 1222347888999999
Q ss_pred HhhcCCC
Q 041894 181 VLDKIPE 187 (219)
Q Consensus 181 l~~~m~~ 187 (219)
.+++..+
T Consensus 249 ~~~~al~ 255 (406)
T 3sf4_A 249 YYKKTLL 255 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998873
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.94 E-value=0.00043 Score=52.62 Aligned_cols=160 Identities=10% Similarity=-0.093 Sum_probs=115.6
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC----CHHHHHHHHHhcCCCCChhhHHHHHH
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN----LVHDSLCLLDTLKTPAPPVAWKSIIR 79 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~m~~~~~~~~~~~li~ 79 (219)
+.++..+=..+...++++.|...|.+..+.| +...+..|=..|.. + +.++|...|.....+++..++..|=.
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~ 93 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLAR 93 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555556667899999999999998876 45666666666777 6 89999999988765547788888888
Q ss_pred HHHh----cCChhHHHHHHHHhHhCCCC-CCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 80 CCTQ----NGLLVESLTCFVRMIGSGVY-PDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 80 ~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.|.. .+++++|...|+.-.+.|-. -+...+..|-..|.. .++.+.|...++...+.+ .+...+..|=.+
T Consensus 94 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~ 171 (212)
T 3rjv_A 94 VLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMM 171 (212)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 8876 78999999999988776521 014566666666766 778999999999887762 233356666666
Q ss_pred HHhc-C-----CchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 151 YAQS-Q-----NMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 151 y~~~-g-----~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
|... | +. ++|.++|++-.+
T Consensus 172 y~~g~gg~~~~d~------------------~~A~~~~~~A~~ 196 (212)
T 3rjv_A 172 FQQGEKGFIEPNK------------------QKALHWLNVSCL 196 (212)
T ss_dssp HHHCBTTTBCCCH------------------HHHHHHHHHHHH
T ss_pred HHcCCCCCCCCCH------------------HHHHHHHHHHHH
Confidence 6553 2 56 888888776443
No 112
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.91 E-value=0.00027 Score=58.37 Aligned_cols=145 Identities=10% Similarity=-0.089 Sum_probs=69.6
Q ss_pred cccCChhHHHHHHHHHHHc----C-CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC-----hhhHHHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKT----L-EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP-----PVAWKSIIR 79 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~----g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~-----~~~~~~li~ 79 (219)
...|+++.|...|.+..+. + -.....++..+-..|...|+++.|...+.+.. .+ + ..+++.+=.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-LYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-TCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-CchhhHHHHHHHHHH
Confidence 3455566666555555432 1 11235555555555555665555555544321 11 1 234455555
Q ss_pred HHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHh----CCCccHHHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVDLDLYTNNALMNM 150 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~ll~~ 150 (219)
.|...|++++|.+.|.+..+. +-.+ ...++..+-..|...|+++.|...+....+. +-+....++..+-..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 555556666665555553321 1111 1234444555555556666555555554331 112224455555555
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
|.+.|+++.|
T Consensus 271 ~~~~g~~~~A 280 (378)
T 3q15_A 271 LCKAGQTQKA 280 (378)
T ss_dssp HHHTTCHHHH
T ss_pred HHHCCCHHHH
Confidence 5555655555
No 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.91 E-value=5.7e-05 Score=55.37 Aligned_cols=135 Identities=10% Similarity=0.048 Sum_probs=97.1
Q ss_pred hhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH-HhcccCh--hh
Q 041894 50 NNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS-CTLLVDF--RF 124 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~--~~ 124 (219)
...|++++|...+.... .|.+...|..+-..|...|++++|...|++..+.. +.+...+..+-.. +...|++ +.
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678888888887643 33277899999999999999999999999977542 2244566666677 6788998 99
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHh
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCN 202 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~ 202 (219)
|...++...+.. +.+...+..+-..|.+.|++ ++|.+.|++..+ ++ ......++....
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~al~~~p~-~~~~~~~~~~i~ 159 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANY------------------AQAIELWQKVMDLNSP-RINRTQLVESIN 159 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHTCCT-TSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccH------------------HHHHHHHHHHHhhCCC-CccHHHHHHHHH
Confidence 999999988875 34567888888999999999 999999987663 33 233344555544
Q ss_pred hhh
Q 041894 203 KFE 205 (219)
Q Consensus 203 ~~~ 205 (219)
+..
T Consensus 160 ~~~ 162 (177)
T 2e2e_A 160 MAK 162 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.90 E-value=9.5e-05 Score=53.17 Aligned_cols=97 Identities=9% Similarity=-0.079 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
+...+..+-..+.+.|++++|...|+... .|.+...|..+-.+|...|++++|...|+...+. .| +...+..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 44566677778889999999999998764 3327788888888999999999999999987654 34 4567777888
Q ss_pred HHhcccChhhHHHHHHHHHHhC
Q 041894 115 SCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~g 136 (219)
++...|++++|...++...+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8889999999999998876654
No 115
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.89 E-value=0.00039 Score=46.28 Aligned_cols=98 Identities=7% Similarity=-0.062 Sum_probs=80.3
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
+...+..+-..+...|++++|...|+... .|.+...|..+-..+...|++++|...+++..+.. +.+...+..+-.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34567778888999999999999998764 33277888999999999999999999999977642 2245678888889
Q ss_pred HhcccChhhHHHHHHHHHHhC
Q 041894 116 CTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g 136 (219)
+...|+++.|...++...+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhhHHHHHHHHHHHHHcC
Confidence 999999999999999887654
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.89 E-value=0.00018 Score=58.92 Aligned_cols=120 Identities=6% Similarity=0.012 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---------------PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
...+..+=..|.+.|++++|...|+... .|.+ ..+|..+-.+|.+.|++++|...|+..++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4455555566666666666666665542 2202 3566666666777777777777776655431
Q ss_pred CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 102 VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 102 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+-+...|..+-.+|...|+++.|...++...+.. +.+...+..+-.++.+.|+.+.+
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 1234456666666666677777777766666554 23455666666666666666644
No 117
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.88 E-value=8.9e-05 Score=50.58 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=40.0
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--C---CC----hhhHHHH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--P---AP----PVAWKSI 77 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~---~~----~~~~~~l 77 (219)
|..+-..+...|+++.|...|....+.. +.+...+..+-..|.+.|++++|...+..... | .+ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444555555555555544433 22334444444444455555555544443320 0 01 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHhH
Q 041894 78 IRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~ 98 (219)
-..+...|++++|.+.|+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHH
Confidence 444444444444444444443
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.87 E-value=0.00015 Score=48.04 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC---CcccHHHHHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP---DHNVFPSVLKSC 116 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~ 116 (219)
+..+-..+.+.|++++|...|+... .|.+..+|..+-..+...|++++|...|++..+. .| +...+..+-..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHHHHH
Confidence 3444444555555555555554432 1214455555555555555666666555555443 12 234455555555
Q ss_pred hcc-cChhhHHHHHHHHHHh
Q 041894 117 TLL-VDFRFGESVHACIIRL 135 (219)
Q Consensus 117 ~~~-g~~~~a~~~~~~m~~~ 135 (219)
... |++++|.+.+....+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 6666666655555444
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00031 Score=48.99 Aligned_cols=93 Identities=6% Similarity=-0.033 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTL 118 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 118 (219)
+...=..|.+.|++++|...|++.. .|.+..+|..+-.+|.+.|++++|...|+...+. .|+ ...|..+-.++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHH
Confidence 3334445666677777777666532 2225666666666777777777777777665542 232 3456666666666
Q ss_pred ccChhhHHHHHHHHHHhC
Q 041894 119 LVDFRFGESVHACIIRLG 136 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g 136 (219)
.|++++|...++...+..
T Consensus 94 ~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD 111 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHC
Confidence 777777777776665543
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.86 E-value=0.00026 Score=49.16 Aligned_cols=95 Identities=6% Similarity=-0.140 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
+...+..+-..+.+.|++++|...|.... .|.+...|..+-.++...|++++|...|+...+. .| +...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHH
Confidence 34455555555666666666666665432 2214455566666666666666666666655442 23 2345555555
Q ss_pred HHhcccChhhHHHHHHHHHH
Q 041894 115 SCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~ 134 (219)
++...|+++.|...+....+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55666666666666555443
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.85 E-value=0.00018 Score=59.02 Aligned_cols=128 Identities=9% Similarity=-0.072 Sum_probs=101.8
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCc--------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--C
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--------------RFLISRLLFIYNNFNLVHDSLCLLDTLK--T 67 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~ 67 (219)
...|..+=..+.+.|+++.|...|.+..+..-... ...|..+-.+|.+.|++++|...++... .
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566677788899999999999999987752221 5788999999999999999999998764 3
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHH-HHHHHHH
Q 041894 68 PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGE-SVHACII 133 (219)
Q Consensus 68 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~-~~~~~m~ 133 (219)
|.+..+|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+.+.|+.+.+. .++..|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 327889999999999999999999999997764 454 457777778888888888874 4566654
No 122
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.85 E-value=0.00012 Score=60.55 Aligned_cols=128 Identities=8% Similarity=-0.065 Sum_probs=53.2
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCC-----CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----h
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLE-----PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP----P 71 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-----~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~----~ 71 (219)
+..+=..+...|+++.|...+.+..+..- .+ ...+++.+=..|...|++++|...|.+.. .+ + .
T Consensus 144 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 222 (378)
T 3q15_A 144 HFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ-NDRFIA 222 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 33333444445555555555444433210 00 12233444444455555555554444321 01 1 1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.+++.+=..|...|++++|...|.+..+- +-+....++..+-..+.+.|+.+.|...++...+.
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23444444444455555555555443320 11111233444444444555555555555544443
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.84 E-value=0.00022 Score=51.75 Aligned_cols=86 Identities=10% Similarity=-0.084 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+..+=..+.+.|++++|...|+...+. .| +...|..+-.+|...|++++|...++...+... .+...|..+-.+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 34444444445555555555555554432 23 233444444445555555555555555444431 233344444455
Q ss_pred HHhcCCchhH
Q 041894 151 YAQSQNMDMH 160 (219)
Q Consensus 151 y~~~g~~~~~ 160 (219)
|.+.|++++|
T Consensus 114 ~~~lg~~~eA 123 (151)
T 3gyz_A 114 QLRLKAPLKA 123 (151)
T ss_dssp HHHTTCHHHH
T ss_pred HHHcCCHHHH
Confidence 5555555544
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.84 E-value=0.00021 Score=50.57 Aligned_cols=96 Identities=14% Similarity=-0.008 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
..+..+-..+.+.|++++|...|+... .|.+...|..+-.++.+.|++++|...|+...+.. +-+...+..+-.++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344455566777888888888887653 33266777777778888888888888888766532 223456666777777
Q ss_pred cccChhhHHHHHHHHHHhC
Q 041894 118 LLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g 136 (219)
..|+++.|...++...+..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 8888888888887766543
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.83 E-value=0.0002 Score=51.40 Aligned_cols=94 Identities=12% Similarity=-0.049 Sum_probs=80.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
..+..+-..+.+.|+++.|...|....+.. +.+...|..+=.+|.+.|++++|...|+... .|.+..+|..+-.+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455566667889999999999999998775 4477888888889999999999999998764 3427788999999999
Q ss_pred hcCChhHHHHHHHHhHh
Q 041894 83 QNGLLVESLTCFVRMIG 99 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~ 99 (219)
..|++++|...|+...+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998765
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.00015 Score=47.98 Aligned_cols=98 Identities=10% Similarity=-0.051 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc--cHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL--DLYTNNAL 147 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~l 147 (219)
+...|..+-..+...|++++|...|+...+.. +.+...+..+-..+...|+++.|...++...+.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 56778888899999999999999999977642 2345678888888999999999999999988765 23 57888999
Q ss_pred HHHHHhc-CCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 148 MNMYAQS-QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 148 l~~y~~~-g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
-.+|.+. |++ ++|.+.|++...
T Consensus 83 ~~~~~~~~~~~------------------~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKE------------------VEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCS------------------HHHHHHHHHHGG
T ss_pred HHHHHHHhCCH------------------HHHHHHHHHHhh
Confidence 9999999 999 999999987664
No 127
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.81 E-value=0.0013 Score=56.21 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=117.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
.++++.|...|.+..+.| +...+..|=..|.. .++.++|...|.....+++...+..|=..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 788999999999888775 45566666677777 88999999999876644367777777777877 77899
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCCchhH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ----SQNMDMH 160 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~----~g~~~~~ 160 (219)
+|...|+.-.+.| +...+..+-..|.. .++.+.|...++...+.| +...+..|-..|.. .++.+.+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 206 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAIS 206 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHH
Confidence 9999998877765 34455556666655 678889999888887765 45667777777776 6777665
Q ss_pred --HHHH------------hhhhcc----CCcchhhHHHHhhcCCCCC
Q 041894 161 --IYDR------------FQGFGF----NGGREASVHEVLDKIPERN 189 (219)
Q Consensus 161 --~~~~------------~~~~~~----~~g~~~~a~~l~~~m~~~~ 189 (219)
+|+. +..... ..++.++|.++|++..+.+
T Consensus 207 ~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 207 AQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 3333 111111 2678889999998766554
No 128
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.81 E-value=0.0013 Score=56.18 Aligned_cols=176 Identities=10% Similarity=-0.083 Sum_probs=123.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 17 IKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
.++++.|...|.+..+.| +...+..|=..|.. .++.++|...|+....+++..++..|-..|.. .++++
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 788999999999888876 45556666667776 78899999999876644367778888788877 77899
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh----cCCchhH
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ----SQNMDMH 160 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~----~g~~~~~ 160 (219)
+|.+.|+...+.| +...+..+-..|.+ .++.+.|...+....+.| +...+..|-..|.. .++++.+
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999998887765 45566666666666 788889998888877765 34456666666665 5666665
Q ss_pred --HHHHh------------hhhccC----CcchhhHHHHhhcCCCCCCeeehhHHHHHH
Q 041894 161 --IYDRF------------QGFGFN----GGREASVHEVLDKIPERNGNVELSSGLAGC 201 (219)
Q Consensus 161 --~~~~~------------~~~~~~----~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~ 201 (219)
+|+.. .....+ .++.++|.++|++..+.+....+..+-..|
T Consensus 243 ~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 243 RVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34331 111112 688899999999877654244444333333
No 129
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.80 E-value=0.00034 Score=51.34 Aligned_cols=143 Identities=10% Similarity=-0.019 Sum_probs=102.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH--h
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC--T 117 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~ 117 (219)
+..+-..+.+.|++++|...|+... .|.+...|..+-..+...|++++|...|+...+. .|+.. +..+.... .
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHHH
Confidence 3445567888999999999999876 3426788999999999999999999999887543 34332 32222211 2
Q ss_pred cccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC----Ceee
Q 041894 118 LLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN----GNVE 193 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~----~~~~ 193 (219)
..+....+...++...+.. +.+...+..+-.+|...|++ ++|.+.|++..+.+ +...
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~------------------~~A~~~~~~~l~~~p~~~~~~a 146 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRD------------------EEALELLWNILKVNLGAQDGEV 146 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHTTCTTTTTTHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccH------------------HHHHHHHHHHHHhCcccChHHH
Confidence 2233345677788877765 23578888899999999999 99999999876432 0235
Q ss_pred hhHHHHHHhhhhH
Q 041894 194 LSSGLAGCNKFEK 206 (219)
Q Consensus 194 ~n~ll~~~~~~~~ 206 (219)
+..+...|...|+
T Consensus 147 ~~~l~~~~~~~g~ 159 (176)
T 2r5s_A 147 KKTFMDILSALGQ 159 (176)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCC
Confidence 7777777777664
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.00031 Score=48.31 Aligned_cols=91 Identities=5% Similarity=-0.045 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTL 118 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 118 (219)
+..+=..+.+.|++++|...|.+.. .|.+...|..+-.++.+.|++++|...|+...+. .|+ ...|..+-.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH
Confidence 3333444455555555555554432 2214455555555555555555555555554432 222 3344445555555
Q ss_pred ccChhhHHHHHHHHHH
Q 041894 119 LVDFRFGESVHACIIR 134 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~ 134 (219)
.|+++.|...++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555443
No 131
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.79 E-value=0.00034 Score=48.81 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=81.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ 83 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~ 83 (219)
.+...=..+.+.|+++.|...|.+.++.. +.+...|..+-.+|.+.|++++|...|+... .|.+..+|..+-.++..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 44444557889999999999999998875 4578889999999999999999999998754 33278899999999999
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcc
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHN 107 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~ 107 (219)
.|++++|.+.|+...+ +.|+..
T Consensus 94 ~~~~~~A~~~~~~al~--l~P~~~ 115 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ--VDPSNE 115 (126)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCCHHHHHHHHHHHHH--HCcCCH
Confidence 9999999999999776 356643
No 132
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.77 E-value=0.0003 Score=50.88 Aligned_cols=94 Identities=9% Similarity=-0.057 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHH
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSC 116 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~ 116 (219)
..+..+-..|.+.|++++|...|+... .|.+...|..+-.+|.+.|++++|...|+...+. .|+ ...|..+-.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344444445555555555555555432 1214455555555555555555555555554432 222 33445555555
Q ss_pred hcccChhhHHHHHHHHHHh
Q 041894 117 TLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~ 135 (219)
...|+++.|...++...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555554443
No 133
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.74 E-value=0.00052 Score=56.17 Aligned_cols=154 Identities=9% Similarity=-0.039 Sum_probs=104.6
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcC----CC--C-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC---hh
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTL----EP--N-SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP---PV 72 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g----~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~---~~ 72 (219)
+..+-..+...|+++.|...+.+..+.. .. | ....+..+-..|...|++++|...+++.. ..++ ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4555567788899999999998876542 22 3 23456667778899999999999987642 1101 24
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHH-----HHHHHhcccChhhHHHHHHHHHHhCCCc---cHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPS-----VLKSCTLLVDFRFGESVHACIIRLGVDL---DLYT 143 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~-----ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~ 143 (219)
+|..+-..+...|++++|...+++.....-.++. ..+.. ....+...|+.+.|...+.........+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 5777888889999999999999987643212221 12222 2234678899999999988765433211 1235
Q ss_pred HHHHHHHHHhcCCchhH
Q 041894 144 NNALMNMYAQSQNMDMH 160 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~~ 160 (219)
+..+...+...|+++.+
T Consensus 256 ~~~la~~~~~~g~~~~A 272 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPA 272 (373)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCCHHHH
Confidence 66778889999999544
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.001 Score=46.36 Aligned_cols=96 Identities=9% Similarity=-0.108 Sum_probs=71.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFP 110 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~ 110 (219)
+...+..+-..+.+.|++++|...|+... .| + ...|..+-.+|...|++++|...|+...+. .| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 55667777778888888888888887754 34 4 567777788888888888888888876653 34 345666
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.+-.++...|+++.|...++...+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77777888888888888888877654
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.73 E-value=0.0012 Score=52.54 Aligned_cols=125 Identities=6% Similarity=-0.066 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCC--CCh------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCC-CCc----ccHH
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLKTP--APP------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVY-PDH----NVFP 110 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~~~--~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~t~~ 110 (219)
..+..+.+.|++++|...+++.... .+. ..+..+...+...|++++|...|.+..+.... ++. .+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788999999999999886421 011 12334666677778999999999998763222 332 2588
Q ss_pred HHHHHHhcccChhhHHHHHHHHHH----h-CCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhc
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIR----L-GVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDK 184 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~----~-g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 184 (219)
.+-..|...|+++.|...++...+ . +..+ ...+|..+-..|.+.|++ ++|.+++++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y------------------~~A~~~~~~ 221 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY------------------EESLYQVNK 221 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH------------------HHHHHHHHH
Confidence 888899999999999999998763 1 2222 234788888999999999 777777765
Q ss_pred CC
Q 041894 185 IP 186 (219)
Q Consensus 185 m~ 186 (219)
..
T Consensus 222 al 223 (293)
T 3u3w_A 222 AI 223 (293)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 136
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.72 E-value=0.00085 Score=52.21 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=104.7
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCC-cccH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPD-HNVF 109 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~-~~t~ 109 (219)
.+...+-.+-..+.+.|++++|...|+.+. .|.+ ..++..+-.+|.+.|++++|...|+...+.. -.|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345666677778889999999999999875 3413 5678888899999999999999999987642 1122 2345
Q ss_pred HHHHHHHhc--------ccChhhHHHHHHHHHHhCCCccHHHH-----------------HHHHHHHHhcCCchhHHHHH
Q 041894 110 PSVLKSCTL--------LVDFRFGESVHACIIRLGVDLDLYTN-----------------NALMNMYAQSQNMDMHIYDR 164 (219)
Q Consensus 110 ~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~ll~~y~~~g~~~~~~~~~ 164 (219)
..+-.++.. .|+++.|...++...+.... +.... ..+-..|.+.|++
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~------- 164 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELY------- 164 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH-------
Confidence 555666667 89999999999998877532 22333 3335667777777
Q ss_pred hhhhccCCcchhhHHHHhhcCCC--CCC---eeehhHHHHHHhhh
Q 041894 165 FQGFGFNGGREASVHEVLDKIPE--RNG---NVELSSGLAGCNKF 204 (219)
Q Consensus 165 ~~~~~~~~g~~~~a~~l~~~m~~--~~~---~~~~n~ll~~~~~~ 204 (219)
++|.+.|++..+ |+. ...+..+-.+|.+.
T Consensus 165 -----------~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 165 -----------EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp -----------HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 999999988653 220 12455555566554
No 137
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.00059 Score=51.63 Aligned_cols=126 Identities=8% Similarity=0.009 Sum_probs=94.5
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHH----------------HHHHHHhcCChhHHHHHHHHhHhCCCCC-C
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKS----------------IIRCCTQNGLLVESLTCFVRMIGSGVYP-D 105 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~~p-~ 105 (219)
.-..+.+.|++++|...|++.. .|.+...|.. +-..|.+.|++++|...|++..+. .| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCC
Confidence 3345678999999999998865 3313456666 888999999999999999998764 45 4
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcC
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKI 185 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m 185 (219)
...+..+-..+...|+++.|...++...+.. +.+...+..+-.+|...|+.+. +.+...++..
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~----------------~~~~~~~~~~ 150 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEK----------------KKLETDYKKL 150 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH----------------HHHHHHHC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHH----------------HHHHHHHHHH
Confidence 5688888899999999999999999998876 3456778777777766654311 6677778777
Q ss_pred CCCC
Q 041894 186 PERN 189 (219)
Q Consensus 186 ~~~~ 189 (219)
..++
T Consensus 151 ~~~~ 154 (208)
T 3urz_A 151 SSPT 154 (208)
T ss_dssp -CCC
T ss_pred hCCC
Confidence 6665
No 138
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.69 E-value=0.0003 Score=47.82 Aligned_cols=113 Identities=9% Similarity=-0.100 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCC----cccHH
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPD----HNVFP 110 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~ 110 (219)
...+..+-..+...|++++|...|.... .|.+...|..+-..+...|++++|...|.+..+.. ..++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3567777888999999999999998764 33267889999999999999999999999976542 1222 56777
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQ 153 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~ 153 (219)
.+-..+...|+++.|...++...+.. |+......+-.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 88888999999999999999988865 455555555444443
No 139
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.68 E-value=0.0014 Score=53.66 Aligned_cols=155 Identities=11% Similarity=0.026 Sum_probs=112.3
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCCh----hhHHHHHH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRF----LISRLLFIYNNFNLVHDSLCLLDTLK-----TPAPP----VAWKSIIR 79 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~~----~~~~~li~ 79 (219)
.+...|+++.|...+.+..+..-..+.. +++.+-..|...|++++|...+.+.. .. +. .+++.+-.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD-VWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 4557899999999999987754222222 45566677888999999999998753 12 32 33566778
Q ss_pred HHHhcCChhHHHHHHHHhHhC----CCC--CC-cccHHHHHHHHhcccChhhHHHHHHHHHHhCCC--c--cHHHHHHHH
Q 041894 80 CCTQNGLLVESLTCFVRMIGS----GVY--PD-HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD--L--DLYTNNALM 148 (219)
Q Consensus 80 ~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~--~~~~~~~ll 148 (219)
.+...|++++|...+++..+. +-. |. ...+..+-..+...|+++.|...+......... + ....+..+-
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 888999999999999987542 222 32 234556677888999999999999987654322 1 245677788
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
..+...|++ ++|.+.+++..
T Consensus 182 ~~~~~~g~~------------------~~A~~~l~~a~ 201 (373)
T 1hz4_A 182 QCSLARGDL------------------DNARSQLNRLE 201 (373)
T ss_dssp HHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHcCCH------------------HHHHHHHHHHH
Confidence 889999999 88888877643
No 140
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.67 E-value=0.00087 Score=60.31 Aligned_cols=140 Identities=14% Similarity=-0.001 Sum_probs=86.6
Q ss_pred ccccCChhHHH-HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC-------------CCC---------
Q 041894 14 PVSIKTKSQAK-QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT-------------PAP--------- 70 (219)
Q Consensus 14 ~~~~~~~~~a~-~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~-------------~~~--------- 70 (219)
+-+.|+.+.|. .+|+..... ++.+...|-..+...-+.|+++.|..+|+.+.. | +
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p-~~~~~~~~~~ 430 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP-TNESAINQLK 430 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC-cchhhhhhhc
Confidence 33456666775 777777642 344556667777777778888888888776531 2 2
Q ss_pred ---hhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C-CCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 71 ---PVAWKSIIRCCTQNGLLVESLTCFVRMIGS-G-VYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 71 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
..+|...+....+.|+.+.|..+|...++. + ..+...+..+.|.-.+ .++.+.|+.+|+...+. ...+...+.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHH
Confidence 235777777777777888888888877665 2 1222222233333222 24577888888776655 334555666
Q ss_pred HHHHHHHhcCCc
Q 041894 146 ALMNMYAQSQNM 157 (219)
Q Consensus 146 ~ll~~y~~~g~~ 157 (219)
..++.....|+.
T Consensus 509 ~y~~fe~~~~~~ 520 (679)
T 4e6h_A 509 KYLDFLIYVNEE 520 (679)
T ss_dssp HHHHHHHHHTCH
T ss_pred HHHHHHHhCCCH
Confidence 777777777777
No 141
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.67 E-value=0.00054 Score=52.09 Aligned_cols=141 Identities=8% Similarity=-0.067 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHHh
Q 041894 22 QAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNG----LLVESLTCFVRM 97 (219)
Q Consensus 22 ~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m 97 (219)
+|.+.|.+..+.| +...+..|=..|...+++++|...|.....+++..++..|=..|.. + ++++|.+.|+.-
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4667788777775 6677777888888899999999999987655477888888777877 6 899999999998
Q ss_pred HhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCCC-ccHHHHHHHHHHHHh----cCCchhHHHHHhhhh
Q 041894 98 IGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGVD-LDLYTNNALMNMYAQ----SQNMDMHIYDRFQGF 168 (219)
Q Consensus 98 ~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~y~~----~g~~~~~~~~~~~~~ 168 (219)
.+.| +...+..+-..|.. .++.+.|...+....+.|.. .+...+..|=..|.. .+++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~----------- 145 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD----------- 145 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH-----------
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH-----------
Confidence 7765 44566666666766 78999999999998877642 135677777777777 6667
Q ss_pred ccCCcchhhHHHHhhcCCC
Q 041894 169 GFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 169 ~~~~g~~~~a~~l~~~m~~ 187 (219)
++|.++|++..+
T Consensus 146 -------~~A~~~~~~A~~ 157 (212)
T 3rjv_A 146 -------VKASEYFKGSSS 157 (212)
T ss_dssp -------HHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHH
Confidence 999999987653
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.67 E-value=0.00071 Score=46.82 Aligned_cols=97 Identities=8% Similarity=-0.059 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+...|..+-..+...|++++|...|....+.. +.+...|..+-.++...|+++.|...++...+.. +.+...+..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 67788899999999999999999999976642 2245678888888999999999999999988876 346778889999
Q ss_pred HHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 150 MYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 150 ~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+|...|++ ++|.+.|++..
T Consensus 86 ~~~~~~~~------------------~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESY------------------DEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHhhH------------------HHHHHHHHHHH
Confidence 99999999 89988888755
No 143
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.62 E-value=0.00056 Score=55.02 Aligned_cols=150 Identities=9% Similarity=-0.029 Sum_probs=105.7
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCC----h
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLE---PN--SRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAP----P 71 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~---~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~----~ 71 (219)
.+|+.+-..|.+.|+++.|...|.+..+.-. .+ -..+++.+-..|.+ |++++|...|++.. ..++ .
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 4677788888899999999999998765421 11 13567777788888 99999999987653 1101 3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCC-cc---HH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-LD---LY 142 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~---~~ 142 (219)
.+++.+-..|.+.|++++|...|++..+. +..++. ..+..+...+...|+++.|...++... .... ++ ..
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~ 234 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCA 234 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHH
Confidence 67888999999999999999999997642 222222 255666667777899999999999876 3211 11 22
Q ss_pred HHHHHHHHHHhcCCc
Q 041894 143 TNNALMNMYAQSQNM 157 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~ 157 (219)
....++.+| ..|+.
T Consensus 235 ~l~~l~~~~-~~~d~ 248 (307)
T 2ifu_A 235 ALEDLLQAY-DEQDE 248 (307)
T ss_dssp HHHHHHHHH-HTTCH
T ss_pred HHHHHHHHH-HhcCH
Confidence 345555655 56666
No 144
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=7.5e-05 Score=51.11 Aligned_cols=84 Identities=8% Similarity=-0.012 Sum_probs=58.1
Q ss_pred ccCChhHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTL--EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
..|+++.|...|.+.++.+ -+.+...+..+-..|.+.|++++|...|++.. .|.+..++..+-.++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3577888888888887764 12345567777778888888888888887754 3325677777888888888888888
Q ss_pred HHHHHhHh
Q 041894 92 TCFVRMIG 99 (219)
Q Consensus 92 ~~~~~m~~ 99 (219)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 145
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.60 E-value=0.001 Score=47.95 Aligned_cols=96 Identities=6% Similarity=-0.083 Sum_probs=82.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+...|..+-..+.+.|++++|...|++..+. .| +...|..+-.+|.+.|+++.|...++...+.. ..+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3567888889999999999999999997764 34 56678888899999999999999999988876 34678889999
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+|.+.|++ ++|.+.|++..
T Consensus 87 ~~~~~~g~~------------------~~A~~~~~~al 106 (164)
T 3sz7_A 87 LARFDMADY------------------KGAKEAYEKGI 106 (164)
T ss_dssp HHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHccCH------------------HHHHHHHHHHH
Confidence 999999999 99999998766
No 146
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.60 E-value=0.0025 Score=53.56 Aligned_cols=178 Identities=11% Similarity=-0.090 Sum_probs=117.9
Q ss_pred hhHHHHHHhCccccCChhHHHHHHHHHHHcC------CCC-cHHHHHHHHHHHhh--cCCHHHHHHHHHhcC--CCCChh
Q 041894 4 TKTLINLLKNPVSIKTKSQAKQLHAQIFKTL------EPN-SRFLISRLLFIYNN--FNLVHDSLCLLDTLK--TPAPPV 72 (219)
Q Consensus 4 ~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g------~~~-~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~--~~~~~~ 72 (219)
..+|+.+-..|...|+++.|...+++..+.. ..+ ...+++.+-.++.+ .+++++|...|++.. .|.+..
T Consensus 94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence 4678888889999999999999999886531 112 23455544434443 457999999998754 442555
Q ss_pred hHHHHHHH---HHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHh----cccChhhHHHHHHHHHHhCCCccHHHH
Q 041894 73 AWKSIIRC---CTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCT----LLVDFRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 73 ~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
.+..+... +...++.++|++.|+...+. .|+. ..+..+-..+. ..++.+.|.++++...... +.+..++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 55554444 45567888999998886653 4543 34444444443 3467889999999887765 4567788
Q ss_pred HHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC--CCCeeehhHHHHHHh
Q 041894 145 NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE--RNGNVELSSGLAGCN 202 (219)
Q Consensus 145 ~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~--~~~~~~~n~ll~~~~ 202 (219)
..+-..|.+.|++ ++|.+.|++..+ |+....|..+-..|.
T Consensus 251 ~~lg~~~~~~~~~------------------~~A~~~~~~al~~~p~~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 251 RSAAKFYRRKDEP------------------DKAIELLKKALEYIPNNAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHHHTTCH------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCch------------------HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 8899999999999 999999887653 331445555544443
No 147
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.60 E-value=0.00058 Score=48.24 Aligned_cols=96 Identities=7% Similarity=-0.153 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALM 148 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll 148 (219)
+...+..+-..+.+.|++++|...|+...+. .| +...|..+-.++.+.|+++.|...++...+.. +.+...+..+-
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 3455666778888999999999999998764 45 45677788888999999999999999988876 34566788888
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+|...|++ ++|.+.|++..
T Consensus 94 ~~~~~~g~~------------------~~A~~~~~~al 113 (142)
T 2xcb_A 94 ECHLQLGDL------------------DGAESGFYSAR 113 (142)
T ss_dssp HHHHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHcCCH------------------HHHHHHHHHHH
Confidence 999999999 99999998765
No 148
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.57 E-value=0.00042 Score=59.65 Aligned_cols=147 Identities=10% Similarity=0.038 Sum_probs=105.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~ 87 (219)
+-..+.+.|++++|...|++..+.. +.+..+|..+-.+|.+.|++++|...+++.. .|.+..+|..+-.+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456778999999999999998874 4467889999999999999999999998764 332678899999999999999
Q ss_pred hHHHHHHHHhHhCCCCCC-cccHHHHHHH--HhcccChhhHHHHHH-----------HHHHh-----CC-----CccHHH
Q 041894 88 VESLTCFVRMIGSGVYPD-HNVFPSVLKS--CTLLVDFRFGESVHA-----------CIIRL-----GV-----DLDLYT 143 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~--~~~~g~~~~a~~~~~-----------~m~~~-----g~-----~~~~~~ 143 (219)
++|.+.|++..+. .|+ ...+..+-.+ +.+.|++++|.+.++ ..... +. ..+...
T Consensus 91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~ 168 (477)
T 1wao_1 91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISF 168 (477)
T ss_dssp HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHH
Confidence 9999999997764 343 3344444444 778899999999887 21110 10 123456
Q ss_pred HHHHHHHHHhcCCchh
Q 041894 144 NNALMNMYAQSQNMDM 159 (219)
Q Consensus 144 ~~~ll~~y~~~g~~~~ 159 (219)
...++..+-+.+.+..
T Consensus 169 l~~lie~l~~~~~l~e 184 (477)
T 1wao_1 169 MKELMQWYKDQKKLHR 184 (477)
T ss_dssp HHHHHHHHHTCCCCCH
T ss_pred HHHHHHHHHcCCCCCH
Confidence 6677777777666643
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.56 E-value=0.0012 Score=49.27 Aligned_cols=142 Identities=7% Similarity=-0.048 Sum_probs=95.8
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh----------------hhH
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP----------------VAW 74 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~----------------~~~ 74 (219)
.....++++.+...|+.-.+.. ......+..+-..+.+.|++++|...|++.. .|.+. .+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3344455555555554322211 1123456666677888999999999998753 12133 678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
..+-.+|.+.|++++|...|+...+.. +.+...+..+-.+|...|+++.|...++...+.. +.+...+..+-.++.+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 888889999999999999999877642 2345677788888899999999999999887765 33566777888888887
Q ss_pred CCc
Q 041894 155 QNM 157 (219)
Q Consensus 155 g~~ 157 (219)
++.
T Consensus 170 ~~~ 172 (198)
T 2fbn_A 170 KEA 172 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 777
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.55 E-value=0.00091 Score=49.86 Aligned_cols=129 Identities=10% Similarity=-0.033 Sum_probs=90.8
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC-CC---c-----------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CC
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE-PN---S-----------RFLISRLLFIYNNFNLVHDSLCLLDTLK--TP 68 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~-~~---~-----------~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~ 68 (219)
.+..+=..+.+.|+++.|...|.+..+..- .| . ..+|..+-.+|.+.|++++|...++... .|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 455555677889999999999999987531 12 1 2678888889999999999999998764 33
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHH-HHHHHHHHhC
Q 041894 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGE-SVHACIIRLG 136 (219)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~-~~~~~m~~~g 136 (219)
.+..+|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+...++.+++. ..+..|...+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 27788999999999999999999999997654 454 456666666667777777666 4455554443
No 151
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.54 E-value=0.0012 Score=55.69 Aligned_cols=121 Identities=10% Similarity=0.052 Sum_probs=60.9
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc-------
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN------- 84 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~------- 84 (219)
....++++.|.+.+++..+.. +.+..++..+-..|.+.|++++|...|.... .|.+..+|..+-.+|...
T Consensus 223 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 223 REEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp C------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhH
Confidence 334556677777777766554 3355666777777777777777777776543 231334444433333211
Q ss_pred ------------CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 85 ------------GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 85 ------------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+..++|...|....+.. +.+..++..+-..+...|++++|...++...+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 12344444454443321 1233455555555556666666666655555443
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00091 Score=45.87 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
...|..+-..+.+.|++++|...|++..+.. +.+...|..+-.++.+.|+++.|...++...+.. +.+...|..+-.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456777788899999999999999977642 2345788888899999999999999999988875 3457788888999
Q ss_pred HHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 151 YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 151 y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
|...|++ ++|.+.|++..
T Consensus 82 ~~~~~~~------------------~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEY------------------ASALETLDAAR 99 (126)
T ss_dssp HHHTTCH------------------HHHHHHHHHHH
T ss_pred HHHHhCH------------------HHHHHHHHHHH
Confidence 9999999 88888888654
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0014 Score=45.64 Aligned_cols=96 Identities=9% Similarity=-0.024 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
+...+..+-..+...|++++|...|++..+. .|+ ...|..+-..|...|++++|...++...+.. ..+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 5678888999999999999999999998764 566 5778888888999999999999999988765 33577888
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+-.+|...|++ ++|.+.|++..
T Consensus 104 ~~a~~~~~~~~~------------------~~A~~~~~~al 126 (148)
T 2dba_A 104 RRSQALEKLGRL------------------DQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCH------------------HHHHHHHHHHH
Confidence 888999999999 99999998765
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.47 E-value=0.00076 Score=46.53 Aligned_cols=86 Identities=10% Similarity=0.017 Sum_probs=46.7
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChh
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~ 123 (219)
..+.+.|++++|...|+... .|.+...|..+=.++...|++++|...|++..+. .|+ ...+..+-.++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 34555666666666665543 2224555555555666666666666666554432 232 334555555556666666
Q ss_pred hHHHHHHHHHH
Q 041894 124 FGESVHACIIR 134 (219)
Q Consensus 124 ~a~~~~~~m~~ 134 (219)
+|...++...+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 66666655543
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.46 E-value=0.0013 Score=52.80 Aligned_cols=133 Identities=7% Similarity=-0.123 Sum_probs=91.6
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCCh----hhHHHHHHHHHhcCC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPP----VAWKSIIRCCTQNGL 86 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~li~~~~~~g~ 86 (219)
...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|.......+. ..+..+=.++...|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 344566789999999988877644 54435555555888899999999999765432022 245566678888899
Q ss_pred hhHHHHHHHHhHhCCCCCCcc--cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 87 LVESLTCFVRMIGSGVYPDHN--VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
+++|+..|++-......|... .....-.++.+.|+.++|..+|+.+..... +...+.+|
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P--~~~~~~aL 247 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP--EPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC--CHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--cHHHHHHH
Confidence 999999998876544336532 334445566788999999999999888763 34444444
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.46 E-value=0.00043 Score=51.18 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=79.1
Q ss_pred hhcCCHHHHHH---HHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh----CCCCC-CcccHHHHHHHHhcccC
Q 041894 50 NNFNLVHDSLC---LLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG----SGVYP-DHNVFPSVLKSCTLLVD 121 (219)
Q Consensus 50 ~~~g~~~~A~~---~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~g~ 121 (219)
...|++++|.+ .+..-+.. ...+++.+-..+...|++++|...|++..+ .+..| ....+..+-..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPAT-ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 46789999999 55443333 567889999999999999999999998764 22222 23567777788889999
Q ss_pred hhhHHHHHHHHHHh----CCCc--cHHHHHHHHHHHHhcCCchhH
Q 041894 122 FRFGESVHACIIRL----GVDL--DLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 122 ~~~a~~~~~~m~~~----g~~~--~~~~~~~ll~~y~~~g~~~~~ 160 (219)
++.|...+....+. +-.+ ....+..+-..|...|+++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 126 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGA 126 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999998885543 2122 355678888899999999444
No 157
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.44 E-value=0.0017 Score=58.51 Aligned_cols=151 Identities=6% Similarity=-0.065 Sum_probs=106.6
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcCC---------CC------------cHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTLE---------PN------------SRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~---------~~------------~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
.|-..+...-+.|+++.|..+|+.+.+... .| ...+|-..+...-+.|.++.|+.+|..
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555666678999999999999987520 13 234788888888899999999999987
Q ss_pred cC-C-CC-ChhhHHHHHHHHHh-cCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC--
Q 041894 65 LK-T-PA-PPVAWKSIIRCCTQ-NGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD-- 138 (219)
Q Consensus 65 m~-~-~~-~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-- 138 (219)
.. . |. ....|-....--.+ .++++.|..+|+..++. ..-+...|...++-....|+.+.|+.+|+........
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 64 2 20 22333322222223 35699999999997765 2234455667788778889999999999998776532
Q ss_pred ccHHHHHHHHHHHHhcCCc
Q 041894 139 LDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 139 ~~~~~~~~ll~~y~~~g~~ 157 (219)
-....|...++.-.+.|+.
T Consensus 539 ~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHcCCH
Confidence 2456788888888888888
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.43 E-value=0.00079 Score=47.24 Aligned_cols=129 Identities=11% Similarity=-0.046 Sum_probs=86.0
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-----CCCC----
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-----TPAP---- 70 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-----~~~~---- 70 (219)
.++..+-..+...|+++.|...+.+..+..-. ++ ..++..+-..|...|++++|...+++.. .+ +
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcHHH
Confidence 35566666777888888888888877654211 11 1366777778888888888888887643 11 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
..++..+-..+...|++++|...+++..+. +-.+ ....+..+-..+...|+++.|...++...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345677777888888888888888775432 2111 124566666777778888888887776543
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.43 E-value=0.00053 Score=59.04 Aligned_cols=115 Identities=9% Similarity=-0.010 Sum_probs=87.6
Q ss_pred HHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 48 IYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
.+.+.|++++|...|++.. .|.+..+|..+-.+|.+.|++++|.+.|++..+. .|+ ...|..+-.+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 4567899999999998754 3426889999999999999999999999998765 454 5678888889999999999
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHH--HHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 125 GESVHACIIRLGVDLDLYTNNALMNM--YAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 125 a~~~~~~m~~~g~~~~~~~~~~ll~~--y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
|...++...+.... +...+..+-.+ +.+.|++ ++|.++++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~------------------~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAF------------------ERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHH------------------CCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH------------------HHHhcccc
Confidence 99999998876532 33344444444 8888999 77777776
No 160
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.42 E-value=0.0032 Score=47.94 Aligned_cols=131 Identities=12% Similarity=0.111 Sum_probs=95.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCC-CcH-HHHHHHHHHHh------------------hcCCHHHHHHHHHh
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEP-NSR-FLISRLLFIYN------------------NFNLVHDSLCLLDT 64 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~-~~~-~~~~~ll~~~~------------------~~g~~~~A~~~~~~ 64 (219)
..+..+-.++.+.|+++.|...|++..+..-. +.. ..+..+-.++. ..|+.++|...|+.
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 45666778899999999999999999876422 221 13333333333 36789999999988
Q ss_pred cC--CCCChhhHH-----------------HHHHHHHhcCChhHHHHHHHHhHhCCCCCCc----ccHHHHHHHHhcccC
Q 041894 65 LK--TPAPPVAWK-----------------SIIRCCTQNGLLVESLTCFVRMIGSGVYPDH----NVFPSVLKSCTLLVD 121 (219)
Q Consensus 65 m~--~~~~~~~~~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~ 121 (219)
+. .|.+..++. .+-..|.+.|++++|...|+++.+. .|+. ..+..+..++.+.|+
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCC
Confidence 75 341333332 3445678899999999999998865 3543 457788899999999
Q ss_pred hhhHHHHHHHHHHhCC
Q 041894 122 FRFGESVHACIIRLGV 137 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~ 137 (219)
.+.|.+.++.+...+.
T Consensus 200 ~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 200 NAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHhhCC
Confidence 9999999998887764
No 161
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.37 E-value=0.00075 Score=47.38 Aligned_cols=126 Identities=12% Similarity=-0.008 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcCC-----CCC----hhhHHHHHHHHHhcCChhHHHHHHHHhHhC----CCCCC-
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLKT-----PAP----PVAWKSIIRCCTQNGLLVESLTCFVRMIGS----GVYPD- 105 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~-----~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~- 105 (219)
.++..+-..|...|++++|...+.+... + + ..++..+-..+...|++++|...|++..+. +-.+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4567777788999999999999987541 2 2 247888889999999999999999986542 11111
Q ss_pred cccHHHHHHHHhcccChhhHHHHHHHHHHh----CCC-ccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHH
Q 041894 106 HNVFPSVLKSCTLLVDFRFGESVHACIIRL----GVD-LDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHE 180 (219)
Q Consensus 106 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~ 180 (219)
...+..+-..+...|+++.|...++...+. +.. .....+..+-..|...|++ ++|.+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~------------------~~A~~ 150 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH------------------DQAMH 150 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCH------------------HHHHH
Confidence 346677778888999999999998886543 211 1245677788889999999 88877
Q ss_pred Hhhc
Q 041894 181 VLDK 184 (219)
Q Consensus 181 l~~~ 184 (219)
.+++
T Consensus 151 ~~~~ 154 (164)
T 3ro3_A 151 FAEK 154 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.33 E-value=0.0031 Score=42.93 Aligned_cols=85 Identities=12% Similarity=-0.011 Sum_probs=41.2
Q ss_pred ccccCChhHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhcC
Q 041894 14 PVSIKTKSQAKQLHAQIFKTLEPNSR---FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQNG 85 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~g 85 (219)
+.+.|+++.|...|....+..- .+. ..+..+-..|.+.|++++|...|+... .|.+ ..++..+-.++...|
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 3445555555555555554321 111 244444445555555555555555432 2212 233444455555555
Q ss_pred ChhHHHHHHHHhHh
Q 041894 86 LLVESLTCFVRMIG 99 (219)
Q Consensus 86 ~~~~a~~~~~~m~~ 99 (219)
++++|...|++..+
T Consensus 91 ~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 91 KNTEAQQTLQQVAT 104 (129)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.30 E-value=0.0015 Score=45.36 Aligned_cols=88 Identities=7% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC--CCCC----cccHHHHHHHHhc
Q 041894 47 FIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG--VYPD----HNVFPSVLKSCTL 118 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~ll~~~~~ 118 (219)
..+.+.|++++|+..|++.. .|.+..+|+.+=.+|.+.|++++|.+.|+...+-. ..++ ..+|..+-.++..
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence 34455555555555554432 22144555555555555555555555555543210 1111 1134444455555
Q ss_pred ccChhhHHHHHHHHHH
Q 041894 119 LVDFRFGESVHACIIR 134 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~ 134 (219)
.|+++.|...++...+
T Consensus 96 ~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 96 QNDLSLAVQWFHRSLS 111 (127)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 5566666655555444
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.30 E-value=0.0041 Score=42.31 Aligned_cols=89 Identities=10% Similarity=-0.100 Sum_probs=50.7
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCCCh---hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----cccHHHHHHHH
Q 041894 46 LFIYNNFNLVHDSLCLLDTLK--TPAPP---VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNVFPSVLKSC 116 (219)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~m~--~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~ 116 (219)
-..+.+.|++++|...|+... .|.+. .++..+-.++.+.|++++|...|+...+. .|+ ...+..+-.++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHH
Confidence 345556666777766666543 23122 35555566666666777776666665543 233 23344455556
Q ss_pred hcccChhhHHHHHHHHHHhC
Q 041894 117 TLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g 136 (219)
...|+++.|...++...+..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 66666666666666665543
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.27 E-value=0.0016 Score=44.93 Aligned_cols=95 Identities=12% Similarity=-0.074 Sum_probs=77.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
.+-.+-..+.+.|++++|...|+...+. .| +...|..+-.++...|+++.|...++...+... .+...+..+-.+|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3555667788899999999999998764 45 456777788888999999999999999888763 3567888899999
Q ss_pred HhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 152 AQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 152 ~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
.+.|++ ++|.+.|++..+.
T Consensus 96 ~~~g~~------------------~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNA------------------NAALASLRAWLLS 114 (121)
T ss_dssp HHHHHH------------------HHHHHHHHHHHC-
T ss_pred HHcCCH------------------HHHHHHHHHHHHh
Confidence 999999 9999999876543
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.25 E-value=0.0031 Score=53.85 Aligned_cols=117 Identities=9% Similarity=-0.101 Sum_probs=51.7
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCc--------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNS--------------RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP 70 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~ 70 (219)
|...=..+.+.|+++.|...|.+.++..-... ...|..+-.+|.+.|++++|...++... .|.+
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 33333444555555555555555544321110 2444444445555555555555554432 1214
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFG 125 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a 125 (219)
..+|..+-.+|...|++++|...|+...+. .|+ ...+..+-..+.+.++.+.+
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554432 232 23344444444444444433
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.25 E-value=0.0025 Score=44.20 Aligned_cols=102 Identities=10% Similarity=0.042 Sum_probs=77.4
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CCCh-------hhHH
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PAPP-------VAWK 75 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~-------~~~~ 75 (219)
.++..+=..+.+.|+++.|...|.+.++.. +-+...|+.+=.+|.+.|++++|+..|+...+ |.+. .+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345555567889999999999999998875 44677888899999999999999999987541 1011 3566
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVF 109 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 109 (219)
.+=.++...|++++|.+.|+.-++. .||..+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 6667788889999999999886653 4665433
No 168
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00027 Score=47.05 Aligned_cols=65 Identities=8% Similarity=-0.038 Sum_probs=44.1
Q ss_pred CCChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 1 MTSTKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 1 ~P~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
+++...|..+-..+.+.|+++.|...|++..+.. +.+...+..+-.+|.+.|++++|...|+...
T Consensus 1 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp CTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3555666666667777777777777777776654 3355666666677777777777777776643
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.20 E-value=0.0037 Score=53.32 Aligned_cols=116 Identities=6% Similarity=0.061 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCC---------------hhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAP---------------PVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
...|..+=..|.+.|++++|...|+... .|.+ ..+|..+-.+|.+.|++++|...|++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 4467777788999999999999998754 2213 578999999999999999999999998764
Q ss_pred CCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 102 VYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 102 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.| +...|..+-.+|...|+++.|...++...+.. +.+...+..+-.++.+.|+.
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 34 45678888889999999999999999987764 23567888888899999988
No 170
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.19 E-value=0.023 Score=44.88 Aligned_cols=128 Identities=4% Similarity=-0.112 Sum_probs=91.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh------hhHHHHHHHHHhcCChhHHHHHHHHhHhCCC---CCC--cc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP------VAWKSIIRCCTQNGLLVESLTCFVRMIGSGV---YPD--HN 107 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~~ 107 (219)
.+...+..+...|++++|.+.+.+.. .+... ..+..+-..+...|++++|...|.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44566778899999999999987543 12011 2234455667778899999999998764321 121 34
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHHH---Hh-CCCc--cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHH
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACII---RL-GVDL--DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEV 181 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m~---~~-g~~~--~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l 181 (219)
+|+.+-..|...|+++.|...++... +. +-.+ ...+++.+-..|.+.|++ ++|.++
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y------------------~~Al~~ 218 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY------------------EESLYQ 218 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH------------------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhH------------------HHHHHH
Confidence 77888889999999999999998865 22 1122 225888889999999999 888888
Q ss_pred hhcCC
Q 041894 182 LDKIP 186 (219)
Q Consensus 182 ~~~m~ 186 (219)
|++..
T Consensus 219 ~~kal 223 (293)
T 2qfc_A 219 VNKAI 223 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77543
No 171
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.16 E-value=0.0046 Score=49.57 Aligned_cols=128 Identities=6% Similarity=-0.189 Sum_probs=93.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHh
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCT 117 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~ 117 (219)
+-.+...+...|++++|.++|+.+. .| +....-.+-..+.+.+++++|...|+...+.. .|. ...+..+=.++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p-~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGS-EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 3445667888999999999999986 44 33354455557888999999999997543321 111 235666778889
Q ss_pred cccChhhHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 118 LLVDFRFGESVHACIIRLGVDLD--LYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
+.|++++|...++........|. .......-.++.+.|+. ++|..+|+++...+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~------------------deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE------------------SAAVALLEWLQTTH 238 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHhcC
Confidence 99999999999998875433253 33556667788899999 89999988877544
No 172
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.10 E-value=0.014 Score=49.67 Aligned_cols=138 Identities=9% Similarity=0.058 Sum_probs=84.4
Q ss_pred HHHHHHhCccccC---ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----CCHHHHHHHHHhcCCCCChhhHHHHH
Q 041894 6 TLINLLKNPVSIK---TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF----NLVHDSLCLLDTLKTPAPPVAWKSII 78 (219)
Q Consensus 6 ~~~~ll~~~~~~~---~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~li 78 (219)
++..+=..+.+.| +.+.|...|.+..+.| .++...+..|-..|... ++.++|...|.... |++..++..+=
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg 255 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLA 255 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3444444555566 7778888888887777 33444444444455443 67888888887766 54666666665
Q ss_pred HH-H--HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc-----ChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 79 RC-C--TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-----DFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 79 ~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
.. + ...+++++|...|+.-.+.| +...+..+-..|. .| +.+.|...+.... .-+...+..|=..
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHH
Confidence 55 3 35678888888888877666 3344444444444 44 7777777776654 2334445555555
Q ss_pred HHh
Q 041894 151 YAQ 153 (219)
Q Consensus 151 y~~ 153 (219)
|..
T Consensus 328 y~~ 330 (452)
T 3e4b_A 328 YRR 330 (452)
T ss_dssp HHT
T ss_pred HHC
Confidence 554
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0098 Score=49.32 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=102.9
Q ss_pred hCccccCChhHHHHHHHHHHHcCCCC-c---------------HHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCCh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTLEPN-S---------------RFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPP 71 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g~~~-~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~ 71 (219)
+.+.+.|++++|.+.|..+++..-.. + ...+..|...|.+.|++++|.+.+.... .-++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 34567899999999999998754221 1 1246788899999999999999998764 11021
Q ss_pred h---hHHHHH-HHHHhcCChhHHHHHHHHhHh----CCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh--CC--C
Q 041894 72 V---AWKSII-RCCTQNGLLVESLTCFVRMIG----SGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL--GV--D 138 (219)
Q Consensus 72 ~---~~~~li-~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~--~ 138 (219)
. .....+ ..+...|++++|..++.+... .+..+. ..++..+...+...|+++.|..++...... +. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 122233 333345889999999988643 333443 346778889999999999999998886543 11 1
Q ss_pred c-cHHHHHHHHHHHHhcCCc
Q 041894 139 L-DLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 139 ~-~~~~~~~ll~~y~~~g~~ 157 (219)
+ ...++..+...|...|++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHHhCcH
Confidence 2 356888889999999999
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.04 E-value=0.006 Score=50.64 Aligned_cols=114 Identities=6% Similarity=-0.023 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCC------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKT------------------PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV 102 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 102 (219)
.+..+=..+.+.|++++|...|++... |.+..+|+.+-.+|.+.|++++|...+++.++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 355666677888888888887765432 114577888889999999999999999988764
Q ss_pred CC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 103 YP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 103 ~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.| +...|..+-.+|...|++++|...++...+.. +.+...+..+-.++.+.++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 45 45677778888899999999999999887765 23566777777777777777
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.02 E-value=0.00066 Score=46.23 Aligned_cols=100 Identities=10% Similarity=0.056 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHHhcCC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhh
Q 041894 51 NFNLVHDSLCLLDTLKT-----PAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRF 124 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~ 124 (219)
..|++++|+..|++... |.+..+|..+-..|...|++++|...|++..+. .|+ ...+..+-.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 34666777777765432 213456667777777777777777777776553 233 4456666666777777777
Q ss_pred HHHHHHHHHHhCC-CccHHHHHHHHHHHH
Q 041894 125 GESVHACIIRLGV-DLDLYTNNALMNMYA 152 (219)
Q Consensus 125 a~~~~~~m~~~g~-~~~~~~~~~ll~~y~ 152 (219)
|...+....+... .|+...|...|..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 7777776554432 233434444444433
No 176
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0014 Score=43.41 Aligned_cols=82 Identities=12% Similarity=0.084 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc-------HHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD-------LYT 143 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~ 143 (219)
..|..+-..+...|++++|...|++..+. .| +...|..+-.++.+.|+++.|...++...+.. |+ ...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 34555555556666666666666655432 22 33445555555566666666666666555432 22 334
Q ss_pred HHHHHHHHHhcCCc
Q 041894 144 NNALMNMYAQSQNM 157 (219)
Q Consensus 144 ~~~ll~~y~~~g~~ 157 (219)
+..+-.++...|+.
T Consensus 81 ~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 81 QYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhH
Confidence 44444555555555
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.96 E-value=0.011 Score=46.90 Aligned_cols=96 Identities=7% Similarity=-0.123 Sum_probs=79.9
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLK 114 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~ 114 (219)
+...+..+-..+.+.|++++|...|.... .|.+...|..+-.+|.+.|++++|...|+...+. .|+ ...+..+-.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45567777788999999999999998764 3427788999999999999999999999987754 454 467788888
Q ss_pred HHhcccChhhHHHHHHHHHHh
Q 041894 115 SCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~ 135 (219)
++...|++++|...+....+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999886654
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.96 E-value=0.0051 Score=51.09 Aligned_cols=120 Identities=9% Similarity=-0.053 Sum_probs=91.0
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc--------------CC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CC
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT--------------LE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TP 68 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~--------------g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~ 68 (219)
.|..+=..+.+.|+++.|...|.+.++. .. +.+..+|..+-.+|.+.|++++|...++... .|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4556666788999999999999998862 02 2245678888889999999999999998764 33
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHH
Q 041894 69 APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 69 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
.+..+|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 26788999999999999999999999997754 454 4455555555566666655543
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.93 E-value=0.0071 Score=52.28 Aligned_cols=120 Identities=10% Similarity=-0.039 Sum_probs=70.6
Q ss_pred ccccCChhHHHHHHHHHHHcC---C---CC-cHHHHHHHHHHHhhcCCHHHHHHHHHhcC----------CCCC-hhhHH
Q 041894 14 PVSIKTKSQAKQLHAQIFKTL---E---PN-SRFLISRLLFIYNNFNLVHDSLCLLDTLK----------TPAP-PVAWK 75 (219)
Q Consensus 14 ~~~~~~~~~a~~l~~~m~~~g---~---~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----------~~~~-~~~~~ 75 (219)
+...|++++|+.++.+.++.. + +| ...+++.|...|...|++++|+.++.+.- .| + ..+++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~ 397 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QLGMAVM 397 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHH
Confidence 446677777777777665432 2 22 22356777777777777777777665532 12 2 25577
Q ss_pred HHHHHHHhcCChhHHHHHHHHhHh---CCCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 76 SIIRCCTQNGLLVESLTCFVRMIG---SGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 76 ~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
.|-..|...|++++|..+|++-++ .-.-||. .+.+.+-.++...+.+++|+.++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766432 1122332 2333444455556667777777666643
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.90 E-value=0.0067 Score=43.43 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..+|..+-.+|.+.|++++|...++..++. .| +...|..+-.+|...|+++.|...+....+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 355666666666667777776666665543 23 33455666666666677777776666665543
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.82 E-value=0.008 Score=49.07 Aligned_cols=127 Identities=8% Similarity=-0.046 Sum_probs=72.3
Q ss_pred hHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHH------------------HHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 5 KTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRF------------------LISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~------------------~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
..+...=..+.+.|+++.|...|.+..+.. |+.. .|..+-.+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345556667888999999999999887653 3332 67778888888999999998887653
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc-cHHHHHHH-HhcccChhhHHHHHHHHHHh
Q 041894 67 --TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN-VFPSVLKS-CTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 67 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~-~~~~g~~~~a~~~~~~m~~~ 135 (219)
.|.+..+|..+-.+|...|++++|...|+...+. .|+.. .+..+-.. ....+..+.+..++..|...
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 2326788888888999999999999998887543 45432 33333222 12335566666777766544
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.80 E-value=0.0082 Score=40.26 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+...|....+.. +.+...+..+-..|.+.|++++|...|+... .|.+..+|..+-.+|...|++++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444432 2244555555556666666666666665432 22144555555556666666666666655543
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.70 E-value=0.022 Score=40.08 Aligned_cols=117 Identities=10% Similarity=-0.044 Sum_probs=90.5
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCChh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----NGLLV 88 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~g~~~ 88 (219)
+..-.++++.|..+|.+..+.| .|... |=..|...+.+++|.+.|......++..++..|=..|.. .++++
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CcCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 3344467899999999999988 33333 555667777889999999876544378888888888888 78999
Q ss_pred HHHHHHHHhHhCCCCCCcccHHHHHHHHhc----ccChhhHHHHHHHHHHhCC
Q 041894 89 ESLTCFVRMIGSGVYPDHNVFPSVLKSCTL----LVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 89 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 137 (219)
+|.+.|+.-.+.| +...+..|-..|.. .++.+.|...++.-.+.|.
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999988776 44556666666666 7899999999998888774
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.69 E-value=0.0088 Score=42.80 Aligned_cols=97 Identities=6% Similarity=-0.014 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC-------CC---------CC-CcccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS-------GV---------YP-DHNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
..+...=..+.+.|++++|...|....+. .- .| +...|..+-.+|.+.|+++.|...+....+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555556677778888888888775542 00 12 235777788889999999999999999888
Q ss_pred hCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCC
Q 041894 135 LGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPE 187 (219)
Q Consensus 135 ~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~ 187 (219)
.. +.+...|..+-.+|...|++ ++|.+.|++..+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~------------------~~A~~~~~~al~ 125 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKL------------------DEAEEDLKLLLR 125 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcH------------------HHHHHHHHHHHh
Confidence 76 44677888899999999999 999998887663
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.029 Score=46.45 Aligned_cols=155 Identities=8% Similarity=-0.019 Sum_probs=108.3
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHcC-CCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhcC--------CCCChh
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKTL-EPNSRF----LISRLLFIYNNFNLVHDSLCLLDTLK--------TPAPPV 72 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~g-~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~m~--------~~~~~~ 72 (219)
++..+...|.+.|+++.|...+..+.+.- -.++.. +.+.+=..+...|+.+.|..++.... .+.-..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 46778889999999999999999876532 222222 22233334456788999998887653 110135
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhC--CC--CCC-cccHHHHHHHHhcccChhhHHHHHHHHHHh--CC-Cc---cH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGS--GV--YPD-HNVFPSVLKSCTLLVDFRFGESVHACIIRL--GV-DL---DL 141 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~-~~---~~ 141 (219)
++..+...|...|++++|..++.+.... +. .|. ..++..+...|...|+++.|..++...... .+ .| -.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987543 21 121 247888899999999999999998875432 22 22 14
Q ss_pred HHHHHHHHHHHhcCCchhH
Q 041894 142 YTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 142 ~~~~~ll~~y~~~g~~~~~ 160 (219)
..+..+...+...|+++.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 5667777778888888544
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.65 E-value=0.0039 Score=50.95 Aligned_cols=126 Identities=7% Similarity=-0.100 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCCh------------------hhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 40 FLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPP------------------VAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 40 ~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
..+..+=..+.+.|++++|...|.... .| +. .+|+.+-.+|.+.|++++|...|+..++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG-DDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC-HHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345666678889999999999998743 33 32 2788888999999999999999998775
Q ss_pred CCCCC-CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCc-cHHHHHHHHHHH-HhcCCchhHHHHHhhhhccCCcchh
Q 041894 100 SGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDL-DLYTNNALMNMY-AQSQNMDMHIYDRFQGFGFNGGREA 176 (219)
Q Consensus 100 ~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y-~~~g~~~~~~~~~~~~~~~~~g~~~ 176 (219)
. .| +...|..+-.+|...|+++.|...++...+.. | +...+..|-... ...+.. +
T Consensus 259 ~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~------------------~ 316 (338)
T 2if4_A 259 E--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALY------------------Q 316 (338)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH------------------H
Confidence 4 35 45678888889999999999999998875543 3 334444444432 233444 7
Q ss_pred hHHHHhhcCCCC
Q 041894 177 SVHEVLDKIPER 188 (219)
Q Consensus 177 ~a~~l~~~m~~~ 188 (219)
++.++|.+|...
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 788888877643
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.53 E-value=0.0059 Score=52.81 Aligned_cols=122 Identities=9% Similarity=-0.096 Sum_probs=91.1
Q ss_pred HHhhcCCHHHHHHHHHhcC-------CCC--C-hhhHHHHHHHHHhcCChhHHHHHHHHhHh---CCCCCC----cccHH
Q 041894 48 IYNNFNLVHDSLCLLDTLK-------TPA--P-PVAWKSIIRCCTQNGLLVESLTCFVRMIG---SGVYPD----HNVFP 110 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~-------~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~----~~t~~ 110 (219)
.+-..|++++|+.++.+.- .+. + ..+++.|...|...|++++|..++++.++ .-..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999998886542 220 2 36799999999999999999999998653 223333 35788
Q ss_pred HHHHHHhcccChhhHHHHHHHHH-----HhCCC-c-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 111 SVLKSCTLLVDFRFGESVHACII-----RLGVD-L-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~-~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
.|-..|...|++++|+.+++... ..|.. | ...+.+.|-.++...|++ ++|+.++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~------------------~~ae~~~~ 459 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMF------------------RQNEFMYH 459 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Confidence 89999999999999999988743 23533 2 244556666888888888 88998888
Q ss_pred cCCC
Q 041894 184 KIPE 187 (219)
Q Consensus 184 ~m~~ 187 (219)
++++
T Consensus 460 ~~~~ 463 (490)
T 3n71_A 460 KMRE 463 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.48 E-value=0.025 Score=35.57 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 135 (219)
.|..+-..+...|++++|...|++..+.. +.+...+..+-..+.+.|+++.|...++...+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444555555555554443321 112233444444445555555555555544443
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.48 E-value=0.021 Score=35.94 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHh
Q 041894 39 RFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIG 99 (219)
Q Consensus 39 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 99 (219)
...+..+-..+.+.|++++|...|+... .|.+..+|..+-..+.+.|++++|...|++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3455555566667777777777776543 221556666677777777777777777776554
No 190
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.24 E-value=0.022 Score=37.38 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 71 PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 71 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
..+|..+-..|...|++++|...|++..+. .| +...|..+-.+|...|++++|...++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444555555555555555544432 12 2234444444445555555555554443
No 191
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.21 E-value=0.024 Score=37.83 Aligned_cols=63 Identities=6% Similarity=-0.081 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
+...|..+-..|...|++++|...|++..+. .|+ ...|..+-.++...|+++.|...++...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666676666666665543 232 34555555666666666666666666544
No 192
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.17 E-value=0.083 Score=44.73 Aligned_cols=105 Identities=10% Similarity=-0.023 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcC---CHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc----CChhHHHHHHHHhHhCCCCCCcccHHH
Q 041894 41 LISRLLFIYNNFN---LVHDSLCLLDTLKTPA--PPVAWKSIIRCCTQN----GLLVESLTCFVRMIGSGVYPDHNVFPS 111 (219)
Q Consensus 41 ~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~--~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~ 111 (219)
.+..|=..|.+.| +.++|...|......+ +...+..|-..|... +++++|...|+... .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 5666666666677 7777777776553221 333334444555433 57777777777755 22 2223333
Q ss_pred HHHH-H--hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 112 VLKS-C--TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 112 ll~~-~--~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
+-.. + ...++.+.|...+....+.| +...+..|=..|.
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 3333 2 34677777777777776666 3334444444554
No 193
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=0.058 Score=48.47 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=55.5
Q ss_pred HHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHH
Q 041894 48 IYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGES 127 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 127 (219)
.....|+++.|.++-+.+. +...|..+-..+.+.|+++.|.+.|..+.. |..+...+...|+.+....
T Consensus 661 ~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3455667777777666553 337788888888888888888888876532 4445555555666665555
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 128 VHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 128 ~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+-+.....| -++.-..+|.+.|++
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDI 752 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCH
Confidence 544444443 123334455556666
No 194
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.08 E-value=0.43 Score=38.44 Aligned_cols=148 Identities=9% Similarity=-0.043 Sum_probs=78.9
Q ss_pred HHHHHhCccccC--ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH----hhc---CCHHHHHHHHHhcC--CCCChhhHH
Q 041894 7 LINLLKNPVSIK--TKSQAKQLHAQIFKTLEPNSRFLISRLLFIY----NNF---NLVHDSLCLLDTLK--TPAPPVAWK 75 (219)
Q Consensus 7 ~~~ll~~~~~~~--~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~----~~~---g~~~~A~~~~~~m~--~~~~~~~~~ 75 (219)
|+.-=..+...+ +++++..+++.+.+.. +-+..+|+.--..+ .+. ++++++..+++.+- .|.|..+|+
T Consensus 70 Wn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~ 148 (306)
T 3dra_A 70 WIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWS 148 (306)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 333333344445 6777777777666554 22333343332222 333 56666666666653 222556666
Q ss_pred HHHHHHHhcCChh--HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC------hhhHHHHHHHHHHhCCCccHHHHHHH
Q 041894 76 SIIRCCTQNGLLV--ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD------FRFGESVHACIIRLGVDLDLYTNNAL 147 (219)
Q Consensus 76 ~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~------~~~a~~~~~~m~~~g~~~~~~~~~~l 147 (219)
---..+.+.|.++ +++++++.+.+.. .-|...|+---......+. ++++.+.+....... .-|...|+-+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~ 226 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYL 226 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHH
Confidence 6655666666666 7777777766542 1133344443333334443 556666666665554 3456666666
Q ss_pred HHHHHhcCCc
Q 041894 148 MNMYAQSQNM 157 (219)
Q Consensus 148 l~~y~~~g~~ 157 (219)
-..+.+.|+.
T Consensus 227 ~~ll~~~~~~ 236 (306)
T 3dra_A 227 LGIHERFDRS 236 (306)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHhcCCC
Confidence 6666666664
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.97 E-value=0.042 Score=35.95 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+...+..+-..|.+.|++++|...|+... .|.+..+|..+-.+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55667777778888888888888887754 33256778888888888888888888887754
No 196
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.76 E-value=0.031 Score=47.45 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhC---CC---CCC-cccHHHHHHHHhcccChhhHHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGS---GV---YPD-HNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~---~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.+++.|-..|...|++++|..++++.++- -. .|+ ..+++.|-..|...|++++|+.++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 45666666666666666666666554321 11 222 23555556666666666666666555
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.66 E-value=0.14 Score=37.30 Aligned_cols=21 Identities=5% Similarity=-0.016 Sum_probs=12.3
Q ss_pred CccccCChhHHHHHHHHHHHc
Q 041894 13 NPVSIKTKSQAKQLHAQIFKT 33 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~ 33 (219)
.+.+.|+++.|...|++.++.
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhh
Confidence 344556666666666666554
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.63 E-value=0.095 Score=38.14 Aligned_cols=93 Identities=10% Similarity=-0.094 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--------c-----ccHHHHHHHHhcccChhhHHHHHHHHHHh-----
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--------H-----NVFPSVLKSCTLLVDFRFGESVHACIIRL----- 135 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----- 135 (219)
+...=..+.+.|++++|...|+.-.+- .|+ . ..|..+-.++.+.|++++|...++...+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344445556667777777777765432 222 1 16667777777788888888887776664
Q ss_pred CCCc-cHHHH----HHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 136 GVDL-DLYTN----NALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 136 g~~~-~~~~~----~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+.| +...| ...=.++...|++ ++|.+-|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~------------------eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRG------------------AEAMPEFKKVV 129 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCH------------------HHHHHHHHHHH
Confidence 1234 45566 6777888889999 88888777644
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.63 E-value=0.035 Score=47.08 Aligned_cols=88 Identities=14% Similarity=-0.035 Sum_probs=60.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-------CCCC---hhhHHHHHHHHHhcCChhHHHHHHHHhHhC---CC---CCC-cc
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK-------TPAP---PVAWKSIIRCCTQNGLLVESLTCFVRMIGS---GV---YPD-HN 107 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~-------~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~---~p~-~~ 107 (219)
.+..+.+.|++++|+.++++.- .+.+ ..+++.|...|...|++++|..++.+.+.- -. .|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667788888888876542 1201 356888888888888888888888876421 12 232 25
Q ss_pred cHHHHHHHHhcccChhhHHHHHHHH
Q 041894 108 VFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 108 t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
+++.|-..|...|++++|..++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777788888888888888887763
No 200
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.61 E-value=0.69 Score=37.21 Aligned_cols=138 Identities=10% Similarity=-0.016 Sum_probs=98.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhcC--CCCChhhHHHHHHHH----Hhc---
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN--LVHDSLCLLDTLK--TPAPPVAWKSIIRCC----TQN--- 84 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~--~~~~~~~~~~li~~~----~~~--- 84 (219)
+....++|..+++.+++.. +-+...|+.-=..+...+ ++++++.+++.+- .|.+..+|+---..+ .+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 45 AEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred cCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 3344568999999998775 335556777777777777 9999999998865 332667777644444 445
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChh--hHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCC
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR--FGESVHACIIRLGVDLDLYTNNALMNMYAQSQN 156 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~ 156 (219)
+++++++.+++.+.+.. +-|...|+----...+.|.++ .+.+.++.+.+... .|-..|+---.++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGG
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccc
Confidence 78999999999998642 225567766666667778887 88899999988763 466677665555666665
No 201
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.46 E-value=0.88 Score=37.39 Aligned_cols=179 Identities=7% Similarity=-0.027 Sum_probs=117.9
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC--CCCChhhHHHHHHHHHhc-C-Ch
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQN-G-LL 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~-g-~~ 87 (219)
...+....++|..+++.+++.. +-+..+|+.-=..+...+ .+++++.+++.+- .|.+..+|+---..+.+. + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence 3344456678999999998775 335666777666666777 5999999998875 332677888877777766 6 88
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChh--------hHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR--------FGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
++++++++.+.+.. +-|...|+----...+.|.++ .+.+..+.+.+.. ..|...|+---.++.+.++...
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 99999999987642 224556655444555555555 7888888888876 3567778877777777775100
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
....++++.+++++.. .+++...|+-+-.-+.+.|
T Consensus 220 -----------~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 220 -----------SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred -----------chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 0001177777777655 3432556665544444444
No 202
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.07 E-value=0.69 Score=39.71 Aligned_cols=142 Identities=9% Similarity=-0.012 Sum_probs=74.3
Q ss_pred HHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHH-HHHHHhcC----------CCC-ChhhH
Q 041894 7 LINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDS-LCLLDTLK----------TPA-PPVAW 74 (219)
Q Consensus 7 ~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A-~~~~~~m~----------~~~-~~~~~ 74 (219)
|-..+.-+.+.|+.+.|..++++..+. +.+...|-. |+.....++. ..+.+... .+. ....|
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw 289 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHH
Confidence 333444445667788888888887777 333333322 2221111111 11111110 000 12456
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHH--HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFP--SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
...+....+.++++.|..+|+.. +.. .++...|. +.+.... .++.+.|+.+++...+.-. .+...+...++...
T Consensus 290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 66777666777889999999887 221 11222332 2222222 2368889999988766532 22334566677777
Q ss_pred hcCCch
Q 041894 153 QSQNMD 158 (219)
Q Consensus 153 ~~g~~~ 158 (219)
+.|+.+
T Consensus 366 ~~~~~~ 371 (493)
T 2uy1_A 366 RIGDEE 371 (493)
T ss_dssp HHTCHH
T ss_pred HcCCHH
Confidence 778873
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.04 E-value=0.046 Score=39.81 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=65.9
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCH----------HHHHHHHHhcC--CCCChhhHHHHHHHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLV----------HDSLCLLDTLK--TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~----------~~A~~~~~~m~--~~~~~~~~~~li~~~~ 82 (219)
.+.+.++.|.+.++...+.. +.+...|..+=.++.+.+++ ++|+..|++.. .|.+..+|..+=.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34566788888888877765 44666666666666666554 57877777643 3426678888888887
Q ss_pred hcC-----------ChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 83 QNG-----------LLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 83 ~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
..| ++++|.+.|++-.+ +.|+...|...+..+
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 764 78888888877665 467766655544433
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.84 E-value=0.17 Score=42.77 Aligned_cols=81 Identities=9% Similarity=-0.059 Sum_probs=62.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhC---CCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHH-----hCC-Cc-cHH
Q 041894 77 IIRCCTQNGLLVESLTCFVRMIGS---GVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIR-----LGV-DL-DLY 142 (219)
Q Consensus 77 li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~ 142 (219)
.+..+.+.|++++|..++++.++. -+.|+. .+++.+...|...|++++|..+++.... .|. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 356677789999999999987643 234443 5788899999999999999999887542 232 23 367
Q ss_pred HHHHHHHHHHhcCCc
Q 041894 143 TNNALMNMYAQSQNM 157 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~ 157 (219)
+++.|-..|...|++
T Consensus 373 ~l~nLa~~~~~~g~~ 387 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMF 387 (429)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCCH
Confidence 788889999999999
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.69 E-value=0.13 Score=32.90 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHhcCChhHHHHHHHHhHhCCCCCC-cc-cHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 79 RCCTQNGLLVESLTCFVRMIGSGVYPD-HN-VFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 79 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
..+.+.|++++|...|++..+. .|+ .. .+..+-.++...|+++.|...++...+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666666666665543 233 23 45555556666666666666666665554
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.63 E-value=0.49 Score=39.20 Aligned_cols=130 Identities=12% Similarity=0.045 Sum_probs=77.0
Q ss_pred ChhHHHHHHhCcccc-----CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHh----hcC----CH---HHHHHHHHhcC
Q 041894 3 STKTLINLLKNPVSI-----KTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYN----NFN----LV---HDSLCLLDTLK 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~-----~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~----~~g----~~---~~A~~~~~~m~ 66 (219)
+..+|...+.+.... .++.+|..+|++.++.. +-....|..+--+|. ... .. ..|.+....+.
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~ 271 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP 271 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence 345566666554322 23567888888887764 212333333332332 110 11 11222111111
Q ss_pred --CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 67 --TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 67 --~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.. +..+|.++-..+...|++++|...++..+... |+...|..+=..+.-.|+.++|.+.++...+..
T Consensus 272 ~~~~-~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 272 ELNN-LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp GGTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cCCc-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33 66777777666666788888888888877654 777666666677778888888888888877765
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.24 E-value=0.23 Score=42.11 Aligned_cols=74 Identities=16% Similarity=0.045 Sum_probs=57.5
Q ss_pred cCChhHHHHHHHHhHh---CCCCCCc----ccHHHHHHHHhcccChhhHHHHHHHHHH-----hCC-Cc-cHHHHHHHHH
Q 041894 84 NGLLVESLTCFVRMIG---SGVYPDH----NVFPSVLKSCTLLVDFRFGESVHACIIR-----LGV-DL-DLYTNNALMN 149 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~---~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~~~~ll~ 149 (219)
.|++++|..++++.++ .-+-|+. .+++.+...|...|++++|..+++.... .|. .| ...+++.|=.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4788999999988553 3344543 6788999999999999999999888542 242 23 3677889999
Q ss_pred HHHhcCCc
Q 041894 150 MYAQSQNM 157 (219)
Q Consensus 150 ~y~~~g~~ 157 (219)
.|...|++
T Consensus 391 ~~~~qg~~ 398 (433)
T 3qww_A 391 LYMGLENK 398 (433)
T ss_dssp HHHHTTCH
T ss_pred HHHhccCH
Confidence 99999999
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.09 E-value=0.71 Score=32.00 Aligned_cols=86 Identities=10% Similarity=-0.143 Sum_probs=69.9
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh----cCCHHHHHHHHHhcCCCCChhhHHHHHHHHHh----c
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNN----FNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQ----N 84 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~----~ 84 (219)
.+...+..+.|.++|.+..+.| +...+..|=..|.. .++.++|...|....+.++..++..|=..|.. .
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCC
Confidence 3455567888999999998886 55666667677777 89999999999887644478888888888888 8
Q ss_pred CChhHHHHHHHHhHhCC
Q 041894 85 GLLVESLTCFVRMIGSG 101 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g 101 (219)
+++++|...|+.-.+.|
T Consensus 111 ~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHCC
Confidence 89999999999887766
No 209
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.77 E-value=1.3 Score=36.05 Aligned_cols=129 Identities=10% Similarity=-0.020 Sum_probs=72.7
Q ss_pred hHHHHHHhCccccC--ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC-HHHHHHHHHhcC--CCCChhhHHHHHH
Q 041894 5 KTLINLLKNPVSIK--TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL-VHDSLCLLDTLK--TPAPPVAWKSIIR 79 (219)
Q Consensus 5 ~~~~~ll~~~~~~~--~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~--~~~~~~~~~~li~ 79 (219)
.+|+.--..+.+.+ .++.+..+++.+.+.. +.|.+.|+.---.+.+.|. .+++...++.+. .|.|..+|+-.-.
T Consensus 109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ 187 (331)
T 3dss_A 109 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 34444333344444 3677777777777765 4466677666666666666 467777776654 2326667766555
Q ss_pred HHHhc--------------CChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcc-----------cChhhHHHHHHHHH
Q 041894 80 CCTQN--------------GLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLL-----------VDFRFGESVHACII 133 (219)
Q Consensus 80 ~~~~~--------------g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~-----------g~~~~a~~~~~~m~ 133 (219)
.+.+. +.++++++.++..... .|+ ...|+-+-..+.+. +.++.+.+.+.++.
T Consensus 188 ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell 265 (331)
T 3dss_A 188 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ 265 (331)
T ss_dssp HHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 55444 3456777777765543 343 33443222222222 34566666666666
Q ss_pred HhC
Q 041894 134 RLG 136 (219)
Q Consensus 134 ~~g 136 (219)
+..
T Consensus 266 e~~ 268 (331)
T 3dss_A 266 ELE 268 (331)
T ss_dssp HHC
T ss_pred hhC
Confidence 654
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.68 E-value=1.7 Score=38.00 Aligned_cols=134 Identities=9% Similarity=-0.084 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC-ChhHHHHH
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN--LVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG-LLVESLTC 93 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g-~~~~a~~~ 93 (219)
++++...++.+.+.. +-+..+|+.---.+.+.+ +++++...++.+- .. |..+|+---..+.+.| .++++++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998876 447888888888888888 6799999999875 44 7889998888888888 89999999
Q ss_pred HHHhHhCCCCC-CcccHHHHHHHHhcc--------------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 94 FVRMIGSGVYP-DHNVFPSVLKSCTLL--------------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 94 ~~~m~~~g~~p-~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
++++.+. .| |...|+-.-..+.+. +.++++.+.+....... +-|...|+-+--.+.+.++.+
T Consensus 167 ~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 167 TDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp HHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred HHHHHHH--CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 9988764 34 445566554444442 55677888887777665 347788888888888877753
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.55 E-value=0.053 Score=34.87 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=24.1
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhc
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRF-LISRLLFIYNNFNLVHDSLCLLDTL 65 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~m 65 (219)
.+.|+++.|...|+...+.. +.+.. .+..+=.+|.+.|++++|...|+..
T Consensus 11 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555555554432 22333 4444444555555555555555443
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.31 E-value=1.4 Score=38.59 Aligned_cols=180 Identities=9% Similarity=-0.030 Sum_probs=112.1
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC----------HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcC-
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL----------VHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNG- 85 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g- 85 (219)
.-++|.+.++.+.+.. +-+..+|+.-=..+.+.|+ ++++...++.+- .|.+..+|+---..+.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 3457788898888765 2245556554444555555 888999888765 3327788888778888888
Q ss_pred -ChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc-ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHH
Q 041894 86 -LLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYD 163 (219)
Q Consensus 86 -~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~ 163 (219)
+++++++.++.+.+.. .-|...|+---....+.| ..+++.+.+..+.+.. ..|...|+-.-.++.+.+....+...
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 6699999999998753 225566766666666777 7788888888877665 34666777766666553211000000
Q ss_pred HhhhhccCCcchhhHHHHhhcCC--CCCCeeehhHHHHHHhhhh
Q 041894 164 RFQGFGFNGGREASVHEVLDKIP--ERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 164 ~~~~~~~~~g~~~~a~~l~~~m~--~~~~~~~~n~ll~~~~~~~ 205 (219)
-....+.++++.+++++.. .|++...|+-.-..+.+.+
T Consensus 201 ----~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 201 ----GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp ----CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred ----ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 0001133377888777644 3432566766555554444
No 213
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.01 E-value=0.68 Score=39.74 Aligned_cols=110 Identities=11% Similarity=0.009 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC--hhhHH--HHHHHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP--PVAWK--SIIRCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKS 115 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~ 115 (219)
+|-..+...-+.+.++.|+.+|+....| + ...|- +.+.... .++++.|..+|+...+.. |+ ...+...++-
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~ 363 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 3444445444555566666666555322 2 11121 1222211 124555666665544321 22 1223334444
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
..+.|+.+.|+.+++.. ......|...++.=.+.|+.+.
T Consensus 364 e~~~~~~~~aR~l~er~-----~k~~~lw~~~~~fE~~~G~~~~ 402 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL-----EKTSRMWDSMIEYEFMVGSMEL 402 (493)
T ss_dssp HHHHTCHHHHHHHHHHS-----CCBHHHHHHHHHHHHHHSCHHH
T ss_pred HHHcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCCHHH
Confidence 44555555555555554 1234455555555555555543
No 214
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=92.81 E-value=3.4 Score=33.83 Aligned_cols=150 Identities=9% Similarity=-0.058 Sum_probs=104.3
Q ss_pred hHHHHHHhCccccC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-C-CHHHHHHHHHhcCCC--CChhhHHHHHH
Q 041894 5 KTLINLLKNPVSIK-TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNF-N-LVHDSLCLLDTLKTP--APPVAWKSIIR 79 (219)
Q Consensus 5 ~~~~~ll~~~~~~~-~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~A~~~~~~m~~~--~~~~~~~~li~ 79 (219)
.+|+.-=..+...+ .++++..+++.+.+.. +-+..+|+.---.+.+. + ++++++.+++.+-.. .|..+|+---.
T Consensus 89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~w 167 (349)
T 3q7a_A 89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34555444445556 5999999999999776 44777888777777666 6 889999999988643 26667776555
Q ss_pred HHHhcCChh--------HHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC-------hhhHHHHHHHHHHhCCCccHHHH
Q 041894 80 CCTQNGLLV--------ESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-------FRFGESVHACIIRLGVDLDLYTN 144 (219)
Q Consensus 80 ~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-------~~~a~~~~~~m~~~g~~~~~~~~ 144 (219)
.+.+.|.++ +++++++++.+.. .-|...|+---....+.+. ++++.+......... .-|...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 555555555 8999999988753 2255567766666666665 567777777777665 4577888
Q ss_pred HHHHHHHHhcCCc
Q 041894 145 NALMNMYAQSQNM 157 (219)
Q Consensus 145 ~~ll~~y~~~g~~ 157 (219)
+-+-..+.+.|+.
T Consensus 246 ~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 246 NYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCC
Confidence 8877777776654
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=91.59 E-value=0.49 Score=34.28 Aligned_cols=99 Identities=11% Similarity=0.038 Sum_probs=72.0
Q ss_pred hhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCh----------hHHHHHHHHhHhCCCCCCc-ccHHHHHHHH
Q 041894 50 NNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLL----------VESLTCFVRMIGSGVYPDH-NVFPSVLKSC 116 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~ 116 (219)
.+.+.+++|...++... .|.+...|+.+=.++...+++ ++|...|++-.+ +.|+. ..|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 34566788888887654 343778888777788877665 589999988765 45754 5788888888
Q ss_pred hccc-----------ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHH
Q 041894 117 TLLV-----------DFRFGESVHACIIRLGVDLDLYTNNALMNMYA 152 (219)
Q Consensus 117 ~~~g-----------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~ 152 (219)
...| ++++|.+.|+...+. .|+...|...+...-
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 8764 899999999988775 476666666555443
No 216
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=91.15 E-value=5.3 Score=32.43 Aligned_cols=131 Identities=8% Similarity=-0.066 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC-hhHHHHH
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN--LVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGL-LVESLTC 93 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~-~~~a~~~ 93 (219)
++.+..+++.+.+.. +-+..+|+.---.+.+.+ .++++..+++.+- .. |..+|+---..+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678888888888765 447788888777777777 4889999998875 44 78888888888888888 5899999
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhcc--------------cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhc
Q 041894 94 FVRMIGSGVYPDHNVFPSVLKSCTLL--------------VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQS 154 (219)
Q Consensus 94 ~~~m~~~g~~p~~~t~~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~ 154 (219)
++.+.+.. .-|...|+-.-....+. +.++.+.+.+....... +-|...|+-+--.+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 99988753 22444555544444333 45677777777776665 34677777554444444
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.09 E-value=3.5 Score=30.32 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 51 NFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 51 ~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
..|+++.|.++-+++. +...|..|=+.....|+++-|.+.|..
T Consensus 17 ~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3444444444444442 224455555555555555555444443
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=90.99 E-value=2.1 Score=27.59 Aligned_cols=64 Identities=13% Similarity=0.047 Sum_probs=40.0
Q ss_pred CcHHHHHHHHHHHhhcCC---HHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC
Q 041894 37 NSRFLISRLLFIYNNFNL---VHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS 100 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 100 (219)
.|...+..+-.++...++ .++|..+|++.- .|.++.+...+=..+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344445554444433332 577777776643 3325666666667777788888888888887765
No 219
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.88 E-value=2.5 Score=28.18 Aligned_cols=85 Identities=16% Similarity=0.068 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+-+.+...+- ...+--+-+..+.+.|++++|..+.+.+..| |.+.|-+|-. .+.|..+++..-+.++-
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~p-dlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYP-DLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCG-GGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCc-hHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 56677777777776664 3333334445677788888888888888888 8888877754 45566777776666666
Q ss_pred hCCCCCCcccH
Q 041894 99 GSGVYPDHNVF 109 (219)
Q Consensus 99 ~~g~~p~~~t~ 109 (219)
.+| .|-...|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3433333
No 220
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.41 E-value=2.3 Score=28.25 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=50.8
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 19 TKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
..++|..+-+.+...+- ...+--+-+..+.+.|++++|..+.+.+..| |.+.|-+|-. .+.|..+++..-+.++-
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~p-dlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWP-ALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCG-GGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCc-hHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 45677777777766653 2333333444667778888888887777777 8877777644 45666677666666666
Q ss_pred hCC
Q 041894 99 GSG 101 (219)
Q Consensus 99 ~~g 101 (219)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 655
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.24 E-value=0.67 Score=33.33 Aligned_cols=86 Identities=8% Similarity=-0.059 Sum_probs=49.4
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC---CHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCh
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN---LVHDSLCLLDTLKTPAP-----PVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~~~~~-----~~~~~~li~~~~~~g~~ 87 (219)
....+..+++-|....+.|. ++..+.-.+--++++.+ +++++..+|.+.-.. + ...+=.+=-+|.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCccchHHHHHHHHHHHHHccCH
Confidence 33445566666666655553 56666666666666766 555777777665422 2 11222223344667777
Q ss_pred hHHHHHHHHhHhCCCCCC
Q 041894 88 VESLTCFVRMIGSGVYPD 105 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~ 105 (219)
++|.++++..++ +.|+
T Consensus 88 ~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 88 EKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHh--cCCC
Confidence 777777777665 3564
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.13 E-value=3.1 Score=29.56 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=81.1
Q ss_pred cCChhHHHHHHHHHHHcCCC--CcHHHHHHHHHH------------H------hhcCCHHHHHHHHHhcCCCCChhhHHH
Q 041894 17 IKTKSQAKQLHAQIFKTLEP--NSRFLISRLLFI------------Y------NNFNLVHDSLCLLDTLKTPAPPVAWKS 76 (219)
Q Consensus 17 ~~~~~~a~~l~~~m~~~g~~--~~~~~~~~ll~~------------~------~~~g~~~~A~~~~~~m~~~~~~~~~~~ 76 (219)
.|..+++.++.....++.-. .|=+..| +|++ - ..+++++....-+-.+.. +..-.+.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICN-iiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~--~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICN-LLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT--LNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHH-HHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC--CCHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeee-cchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc--hHHHHHH
Confidence 46777888888877766411 1111222 2221 1 335566666655555533 5566788
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 77 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
.++.....|.-++-.+++.++..+ .+|+....-.+-++|.+.|+.+++.+++.+.=+.|++
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 889999999999999999886543 4677778888899999999999999999888888864
No 223
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.82 E-value=0.93 Score=30.26 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=35.6
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
..+-+..+..-.+.|+..+..+.|++|.+.+++..|.++++-++.. ..+...+|..+++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 3334444445566777777777777777777777777777765432 2233445666554
No 224
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.68 E-value=0.91 Score=37.70 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHhhcCCHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCChhHHHHHHHHh
Q 041894 46 LFIYNNFNLVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQNGLLVESLTCFVRM 97 (219)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 97 (219)
+..+...|++++|...+..+. .|-+...|-.+|.++.+.|+..+|++.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555554444332 2214445555555555555555555555554
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.31 E-value=1.7 Score=34.78 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcC--CCCC---hhhHHHHHHHHHhc-----CChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcc-cC
Q 041894 55 VHDSLCLLDTLK--TPAP---PVAWKSIIRCCTQN-----GLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLL-VD 121 (219)
Q Consensus 55 ~~~A~~~~~~m~--~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~-g~ 121 (219)
+..|...+++.. .| + -.+|..+-.-|.+. |+.++|.+.|++-++ +.|+ ..++...-..+++. |+
T Consensus 179 l~~A~a~lerAleLDP-~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDLWP-SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHhCC-CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCC
Confidence 455555555543 34 3 45889999999994 999999999999776 4673 67788888889885 99
Q ss_pred hhhHHHHHHHHHHhCCC--ccHHHHHHHH
Q 041894 122 FRFGESVHACIIRLGVD--LDLYTNNALM 148 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~--~~~~~~~~ll 148 (219)
.+.+.+.++...+.... |+....|.+-
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 99999999999888776 7766665543
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.86 E-value=4.8 Score=28.60 Aligned_cols=128 Identities=6% Similarity=-0.030 Sum_probs=87.6
Q ss_pred HHHHHH--HhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-C----------------CC
Q 041894 43 SRLLFI--YNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGS-G----------------VY 103 (219)
Q Consensus 43 ~~ll~~--~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g----------------~~ 103 (219)
..||.+ ..-.|.+++..++..+...+.+..-||=+|-.....-+-+-.+++++..-+- . ..
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n 88 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN 88 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc
Confidence 344443 3446888888999888764326666777777777766777777777665321 1 13
Q ss_pred CCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhh
Q 041894 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLD 183 (219)
Q Consensus 104 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 183 (219)
-+...+...|+.....|.-++-..+...+..+ -+|+....-.+-.+|.+.|+. .+|.+++.
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~------------------r~a~eLl~ 149 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDE------------------RDATTLLI 149 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCH------------------HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcch------------------hhHHHHHH
Confidence 34445666777777888888888888875443 356777788888999999999 88888887
Q ss_pred cCCCCC
Q 041894 184 KIPERN 189 (219)
Q Consensus 184 ~m~~~~ 189 (219)
+-.++.
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 766553
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.39 E-value=3.6 Score=26.46 Aligned_cols=63 Identities=10% Similarity=-0.047 Sum_probs=46.2
Q ss_pred ChhHHHHHHhCccccCC---hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC
Q 041894 3 STKTLINLLKNPVSIKT---KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK 66 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~---~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 66 (219)
|+..+..+-.++...++ .+.|..++++..+.. +-+......+=..+.+.|++++|...|..+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444443333 789999999999876 4466666777778999999999999999875
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.36 E-value=2.7 Score=37.50 Aligned_cols=82 Identities=7% Similarity=-0.099 Sum_probs=48.9
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
.+...|..+-..+.+.++++.|++.|..+.. |..+..-+...|+.+...++-+.....| -++....+|
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~ 746 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAY 746 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHH
Confidence 4678999999999999999999999998753 2333444444555555444333333322 223333444
Q ss_pred hcccChhhHHHHHH
Q 041894 117 TLLVDFRFGESVHA 130 (219)
Q Consensus 117 ~~~g~~~~a~~~~~ 130 (219)
.+.|++++|.+++.
T Consensus 747 ~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 747 WIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 44455555544443
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.36 E-value=1.7 Score=31.24 Aligned_cols=80 Identities=10% Similarity=-0.065 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc---ChhhHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhcCCchhHH
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV---DFRFGESVHACIIRLGVDL--DLYTNNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~y~~~g~~~~~~ 161 (219)
+..+.+-|.+..+.+- ++..+--.+-.+++++. +.+++..+++.+.+.. .| +...+--|=-+|.+.|++
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y---- 87 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY---- 87 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCH----
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCH----
Confidence 3445555555555443 45444444455666666 6667888888877765 23 122222334455788888
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCC
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|+++++...
T Consensus 88 --------------~~A~~y~~~lL 98 (152)
T 1pc2_A 88 --------------EKALKYVRGLL 98 (152)
T ss_dssp --------------HHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHH
Confidence 88888888766
No 230
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.28 E-value=5.1 Score=33.12 Aligned_cols=133 Identities=9% Similarity=-0.052 Sum_probs=84.6
Q ss_pred CCCCcHHHHHHHHHHHhh--cC---CHHHHHHHHHhcC--CCCChhhHHHHHHHHHh---cC-Ch-hHHHHHHHHhH---
Q 041894 34 LEPNSRFLISRLLFIYNN--FN---LVHDSLCLLDTLK--TPAPPVAWKSIIRCCTQ---NG-LL-VESLTCFVRMI--- 98 (219)
Q Consensus 34 g~~~~~~~~~~ll~~~~~--~g---~~~~A~~~~~~m~--~~~~~~~~~~li~~~~~---~g-~~-~~a~~~~~~m~--- 98 (219)
+.+.+...|...+.+... .+ +..+|..+|++.. .|.....|..+--+|.- .+ .. .....+-..+.
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 346677788888876543 23 3578999998865 55233455543333321 11 11 11111111121
Q ss_pred hC-CCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhh
Q 041894 99 GS-GVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREAS 177 (219)
Q Consensus 99 ~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~ 177 (219)
.. .-..+..+|.++--.+...|+++.|...++...... |+...|..+=..+.-.|++ ++
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~------------------~e 328 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMN------------------RE 328 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCH------------------HH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCH------------------HH
Confidence 11 124456677777666677799999999999998886 7777777777888999999 88
Q ss_pred HHHHhhcCC
Q 041894 178 VHEVLDKIP 186 (219)
Q Consensus 178 a~~l~~~m~ 186 (219)
|.+.|++-.
T Consensus 329 A~e~~~~Al 337 (372)
T 3ly7_A 329 AADAYLTAF 337 (372)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887655
No 231
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=88.27 E-value=3.9 Score=30.35 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=97.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHhcC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQNG 85 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~~g 85 (219)
.|...++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+-+..+++.=..+ .|..-++. +...+..|
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 90 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA-AHLACEHR 90 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH-HHHHHHcC
Confidence 44555677999999989888887776554321 224455566778887777776642222 02222333 33444567
Q ss_pred ChhHHHHHHHHhHhCCCCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH---HHHHHHHHHHhcCCchh
Q 041894 86 LLVESLTCFVRMIGSGVYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY---TNNALMNMYAQSQNMDM 159 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~y~~~g~~~~ 159 (219)
+.+-...+++.....++.++ ..-.+.+ ...+..|.. ++++.+.+.|..++.. ...+.+..-++.|+.
T Consensus 91 ~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~-- 163 (241)
T 1k1a_A 91 SPTCLRALLDSAAPGTLDLEARNYDGLTAL-HVAVNTECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-- 163 (241)
T ss_dssp CHHHHHHHHHHSCTTSCCTTCCCTTSCCHH-HHHHHHTCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH--
T ss_pred CHHHHHHHHHcCCCccccccccCcCCCcHH-HHHHHcCCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH--
Confidence 77766555544332222332 2233333 344455665 4455566677665532 233455566677777
Q ss_pred HHHHHhhhhccCCcchhhHHHHhhcCCCCCC--eeehhHHHHHHhhhh-----HhHHHcCCCCCC
Q 041894 160 HIYDRFQGFGFNGGREASVHEVLDKIPERNG--NVELSSGLAGCNKFE-----KRVVSAGHDADL 217 (219)
Q Consensus 160 ~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~--~~~~n~ll~~~~~~~-----~~m~~~g~~pd~ 217 (219)
+-+.-+++.-...+. ..-++.+-.+ ++.| +.+.+.|..|+.
T Consensus 164 ----------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 164 ----------------SMVQLLLQHGANVNAQMYSGSSALHSA-SGRGLLPLVRTLVRSGADSSL 211 (241)
T ss_dssp ----------------HHHHHHHHTTCCTTCBCTTSCBHHHHH-HHHTCHHHHHHHHHTTCCTTC
T ss_pred ----------------HHHHHHHHcCCCCCCcCCCCCCHHHHH-HHcCCHHHHHHHHhcCCCCCC
Confidence 777777765332220 2223333333 3333 345666766654
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=87.49 E-value=2.4 Score=27.62 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=25.7
Q ss_pred hCccccCChhHHHHHHHHHHHcC------CCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 12 KNPVSIKTKSQAKQLHAQIFKTL------EPNSRFLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 12 ~~~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
..+.+.+++..|...|....+.- -.+...++..|-.+|.+.|+++.|...+++
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~ 71 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKK 71 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34445566666666665554431 012334444444555555555555555444
No 233
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=87.49 E-value=3 Score=28.83 Aligned_cols=64 Identities=17% Similarity=0.164 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHhHhCCCCCCc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 106 (219)
...+|.-|...|+.++|.+.++++..| . .++..++..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 577899999999999999999999866 4 3556666677776542 46778888888877655444
No 234
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.99 E-value=3 Score=34.49 Aligned_cols=72 Identities=7% Similarity=-0.059 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHH-----HhCCCccHHHHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACII-----RLGVDLDLYTNNA 146 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~~~~~ 146 (219)
...++.++...|+++++...+....... +.++..|..+|.++.+.|+..+|.+.++... +.|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3446777888999999999888876542 4477899999999999999999999988854 4599998655443
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.94 E-value=3.4 Score=27.53 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=13.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
++....+.+++|.+.+++.-|.++|+.
T Consensus 44 ~P~ii~aaLrAcRRvND~alAVR~lE~ 70 (109)
T 1v54_E 44 EPKIIDAALRACRRLNDFASAVRILEV 70 (109)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 444455555555555555555555533
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=84.39 E-value=6.2 Score=25.53 Aligned_cols=57 Identities=9% Similarity=-0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcC----C-----CCChhhHHHHHHHHHhcCChhHHHHHHHHhH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLK----T-----PAPPVAWKSIIRCCTQNGLLVESLTCFVRMI 98 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~----~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 98 (219)
+-.|=..+.+.++++.|...|+... . ......+..+-.++.+.|++++|..++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344444555555555555554321 0 0012344455555555555555555555544
No 237
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.25 E-value=2.6 Score=29.67 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=43.4
Q ss_pred HHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 90 SLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+-++.+..-.+.|+..+..+.|++|-+.+|+..|.++++-++.. ..+...+|..+|+-
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 3344445556678899999999999999999999999998877533 23445577776643
No 238
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=83.88 E-value=3 Score=29.79 Aligned_cols=65 Identities=17% Similarity=0.147 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHhHhCCCCCCc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 106 (219)
..+.+|.-|...|+.++|.+.++++..| . .++..++..++-+.++ .+.+..++..+.+.|+-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3578899999999999999999999866 4 3556666677776433 45677888888877655444
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.55 E-value=16 Score=33.09 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=76.6
Q ss_pred HHHHHHHHhhcCC-HHHHHHHHHhcCCCCCh--hh-H-HHHHHHHHhcC-ChhHHHHHHHHhHhC------CCCCCcccH
Q 041894 42 ISRLLFIYNNFNL-VHDSLCLLDTLKTPAPP--VA-W-KSIIRCCTQNG-LLVESLTCFVRMIGS------GVYPDHNVF 109 (219)
Q Consensus 42 ~~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~--~~-~-~~li~~~~~~g-~~~~a~~~~~~m~~~------g~~p~~~t~ 109 (219)
...|+..+...++ ++.|..+|+++... +. .+ + .++|..+.+.+ +--+|.+++.+-.+. ...+.....
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~-~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKK-DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 4555666666666 68899999988643 32 11 2 23333333222 233455555554321 223322111
Q ss_pred -------HHH----HHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhH
Q 041894 110 -------PSV----LKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASV 178 (219)
Q Consensus 110 -------~~l----l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a 178 (219)
..| .+-|...|+++.|..+-..-+..- +.+..+|..|..+|...|++ +.|
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~------------------e~A 390 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEY------------------EKA 390 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH------------------HHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccH------------------HHH
Confidence 112 234567799999999988877764 46799999999999999999 666
Q ss_pred HHHhhcCC
Q 041894 179 HEVLDKIP 186 (219)
Q Consensus 179 ~~l~~~m~ 186 (219)
+=.+..|+
T Consensus 391 LLtLNScP 398 (754)
T 4gns_B 391 LFAINSMP 398 (754)
T ss_dssp HHHHHHSC
T ss_pred HHHHhcCC
Confidence 66666664
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.35 E-value=12 Score=27.34 Aligned_cols=98 Identities=11% Similarity=-0.056 Sum_probs=70.9
Q ss_pred ccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 16 SIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 16 ~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
+.|+++.|.++-..+ .+...|..|=....+.|+++-|++.|..... +..+.--|...|+.++-.++-+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHHHHHHHH
Confidence 568999999887665 3688999999999999999999999997643 4445555556677766543333
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
.-...| -++.....+-..|+++++.+++..
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222333 466777777788898888887643
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=80.99 E-value=13 Score=26.68 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=13.9
Q ss_pred ChhhHHHHHHHHHhcCCh------hHHHHHHHHh
Q 041894 70 PPVAWKSIIRCCTQNGLL------VESLTCFVRM 97 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m 97 (219)
|..+|=..|.-.-+.|++ ++..++|+.-
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerA 45 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQA 45 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH
Confidence 444555555555555555 4444444443
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=78.72 E-value=16 Score=26.27 Aligned_cols=64 Identities=11% Similarity=-0.150 Sum_probs=46.5
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
+++++|.++|+.+++..-.. ...|...-.-=.+.|++..|+++++.-...+..|....-.++=+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 78999999999997653333 44555555555688999999999999888887776644444433
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.69 E-value=8.2 Score=27.19 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=48.1
Q ss_pred HHHHHHHHh-hcC-CHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 42 ISRLLFIYN-NFN-LVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 42 ~~~ll~~~~-~~g-~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
|.+--..|+ +.. |.=+..+-++.+- -| ++....+.+.+|.+.+++.-|.++|+-.+ .++.+...+|.-+++-
T Consensus 54 FdaRy~~~F~~~~iD~wElrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK-~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 54 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVK-DKAGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhcCCchhhHHHHHHH
Confidence 333333333 333 4445566666554 46 77888999999999999999999996654 3345556678877765
Q ss_pred H
Q 041894 116 C 116 (219)
Q Consensus 116 ~ 116 (219)
.
T Consensus 132 l 132 (152)
T 2y69_E 132 L 132 (152)
T ss_dssp H
T ss_pred H
Confidence 4
No 244
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=78.67 E-value=18 Score=28.84 Aligned_cols=104 Identities=11% Similarity=-0.001 Sum_probs=74.5
Q ss_pred ChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhh-----cCCHHHHHHHHHhcC--CCC-ChhhHHHHHHHHHhc-CC
Q 041894 19 TKSQAKQLHAQIFKTLEPNS---RFLISRLLFIYNN-----FNLVHDSLCLLDTLK--TPA-PPVAWKSIIRCCTQN-GL 86 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g~~~~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~m~--~~~-~~~~~~~li~~~~~~-g~ 86 (219)
..+.|..++++..+. .|+ ...|..|-..|.+ .|+.++|+..|++-- .|+ +..++...-+.++.. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 355666666666655 444 5688999999999 499999999998754 441 477788888888885 99
Q ss_pred hhHHHHHHHHhHhCCCC--CCcccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 87 LVESLTCFVRMIGSGVY--PDHNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
.+++.+.+++-+..... |+....+. +.-++|+++++.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~ 295 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHh
Confidence 99999999998887665 66433332 3345555655544
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.39 E-value=0.21 Score=43.21 Aligned_cols=120 Identities=8% Similarity=0.127 Sum_probs=77.7
Q ss_pred ChhHHHHHHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 041894 3 STKTLINLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCT 82 (219)
Q Consensus 3 ~~~~~~~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~ 82 (219)
|+..|..+|.++.+.|.++.-.+.+...++..- ++.+=+.|+.+|++.+++.+-++++. .| |+.-...+=+-|.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~-N~A~iq~VGDrcf 155 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN---GP-NNAHIQQVGDRCY 155 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CC-SSSCTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CC-CcccHHHHHHHHH
Confidence 456788899999999999998888776665533 44555899999999998766554443 34 4444444445555
Q ss_pred hcCChhHHHHHHHHhHhC--------------------CCCCCcccHHHHHHHHhcccChhhHHHH
Q 041894 83 QNGLLVESLTCFVRMIGS--------------------GVYPDHNVFPSVLKSCTLLVDFRFGESV 128 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~~--------------------g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 128 (219)
..|.++.|.-+|..+..- .-.-+..||.-+-.+|...+.++.|.-.
T Consensus 156 ~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 156 DEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred HccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence 555555554444333100 0123567888888888888777766655
No 246
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=77.10 E-value=3.4 Score=28.59 Aligned_cols=83 Identities=7% Similarity=0.077 Sum_probs=52.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC--hhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+.+|.-|...|+.++|.+.++++....+. ...+..++..+.-+.+. .+..-.++..+.+.|+-+.......+-..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v 87 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 87 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4678999999999999999999998521111 12334455556655432 35566777778777766655555444444
Q ss_pred HHhcCC
Q 041894 151 YAQSQN 156 (219)
Q Consensus 151 y~~~g~ 156 (219)
+....+
T Consensus 88 ~~~l~D 93 (129)
T 2nsz_A 88 YNEIPD 93 (129)
T ss_dssp HHHHHH
T ss_pred HhhChH
Confidence 444333
No 247
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=76.41 E-value=19 Score=25.92 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=51.5
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 041894 37 NSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSC 116 (219)
Q Consensus 37 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 116 (219)
++..+-...+.++++.+..+....+...+..+ +...-...+.++.+.|+.+ +...+.++.. .|+..+=...+.+.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 131 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDE-DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFAL 131 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 34444444555555555544444444445555 5555555556666555543 2233333332 23444444445555
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
++.++.+....+...+ + .++..+=...+.++.+.|..
T Consensus 132 ~~~~~~~~~~~L~~~l-~---d~~~~vr~~A~~aL~~~~~~ 168 (201)
T 3ltj_A 132 GEIGDERAVEPLIKAL-K---DEDGWVRQSAADALGEIGGE 168 (201)
T ss_dssp HHHTCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHhCCHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCch
Confidence 5555433222222221 1 23444445555555555543
No 248
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.89 E-value=13 Score=27.81 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHH
Q 041894 122 FRFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAG 200 (219)
Q Consensus 122 ~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~ 200 (219)
......+|..|.++|+=. -..-|.+.-..+-..|++ .+|.++|+.-.+.+ ..+..-|...
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~------------------~~A~~Vy~~GI~~~-A~P~~rL~~~ 155 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFF------------------LEAKVLLELGAENN-CRPYNRLLRS 155 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHTT-CBSHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHcC-CccHHHHHHH
Confidence 556777777777776633 344555555666666666 77777777766666 7777777777
Q ss_pred HhhhhHhHHHcCC
Q 041894 201 CNKFEKRVVSAGH 213 (219)
Q Consensus 201 ~~~~~~~m~~~g~ 213 (219)
|..-..+|.+.++
T Consensus 156 ~~~F~~R~~~~~~ 168 (202)
T 3esl_A 156 LSNYEDRLREMNI 168 (202)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC
Confidence 7777667776665
No 249
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=75.15 E-value=6.9 Score=27.02 Aligned_cols=79 Identities=6% Similarity=-0.141 Sum_probs=35.6
Q ss_pred hHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhh---HHHHHHHHHHhCCCc-cHH-HHHHHHHHHHhcCCchhHHH
Q 041894 88 VESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRF---GESVHACIIRLGVDL-DLY-TNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---a~~~~~~m~~~g~~~-~~~-~~~~ll~~y~~~g~~~~~~~ 162 (219)
..+.+-|.+-...|- |+..+--.+-.++.++....+ +..+++.+.+.+ .| ... ..--|--++.|.|++
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y----- 90 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY----- 90 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH-----
Confidence 333344443333232 333333333344444444333 556666655543 12 111 112223455666666
Q ss_pred HHhhhhccCCcchhhHHHHhhcCC
Q 041894 163 DRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 163 ~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
++|+++++.+.
T Consensus 91 -------------~~A~~~~~~lL 101 (126)
T 1nzn_A 91 -------------EKALKYVRGLL 101 (126)
T ss_dssp -------------HHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHH
Confidence 66666666554
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.46 E-value=63 Score=30.63 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=76.0
Q ss_pred HHHhhcCCHHHHHHHHHhcCC---CC----------------------ChhhHHHHHHHHHhcCChhHHHHHHHHhHhC-
Q 041894 47 FIYNNFNLVHDSLCLLDTLKT---PA----------------------PPVAWKSIIRCCTQNGLLVESLTCFVRMIGS- 100 (219)
Q Consensus 47 ~~~~~~g~~~~A~~~~~~m~~---~~----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 100 (219)
.+|...|++++|...|.+... .. -..-|.-++.-|-+.|.++.+.++-..-.+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 929 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 367789999999999976531 00 0122667788888888888887666543332
Q ss_pred CCCC-C--cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH
Q 041894 101 GVYP-D--HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 101 g~~p-~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
+-.+ + ...|..+++++...|.+++|...+-.+.....+ ......||...|..|+.+..
T Consensus 930 ~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 930 ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 1111 1 125788889999999999998888777665544 44677788888888887543
No 251
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=73.33 E-value=15 Score=23.89 Aligned_cols=64 Identities=16% Similarity=0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHH
Q 041894 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
.+++.+.+.|+- +......+-. ..+....+.|.++++.++.+ +..+|..+++++...|+..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~r-G~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETR-GSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTS-CTTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHc-ChHHHHHHHHHHHHcCcHHHHH
Confidence 367777777744 3333333332 11225789999999999988 8899999999998777766553
No 252
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=72.57 E-value=0.16 Score=43.87 Aligned_cols=151 Identities=11% Similarity=0.058 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV 120 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 120 (219)
+|+.|=.+..+.+.+.+|.+-|- +.. |+..|.-+|.+..+.|.+++-..++..-++..-.|- +=+.|+-+|++.+
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyI--kA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~ 130 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYI--KAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTN 130 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSC--CCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSC
T ss_pred HHHHHHHHHHccCchHHHHHHHH--hCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhC
Confidence 34555555555555555543332 223 445566666666666666666655543333322232 3335666666666
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhH--HHHHhhhhc------cCCcchhhHHHHhhcCCCCCCee
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMH--IYDRFQGFG------FNGGREASVHEVLDKIPERNGNV 192 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~--~~~~~~~~~------~~~g~~~~a~~l~~~m~~~~~~~ 192 (219)
++.+-++++. .||..-...+=+-+-..|.++.| +|..+..|. -+.|+...|.+- -++-+++.
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda---ArKAns~k 200 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG---ARKANSTR 200 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT---TTTCCSSC
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH---HHhcCChh
Confidence 5554443322 23333333334444445555444 344444442 245555555432 22333378
Q ss_pred ehhHHHHHHhhhhH
Q 041894 193 ELSSGLAGCNKFEK 206 (219)
Q Consensus 193 ~~n~ll~~~~~~~~ 206 (219)
||.-+-.+|...+.
T Consensus 201 tWKeV~~ACvd~~E 214 (624)
T 3lvg_A 201 TWKEVCFACVDGKE 214 (624)
T ss_dssp SHHHHTHHHHHSCT
T ss_pred HHHHHHHHHhCchH
Confidence 99999999988873
No 253
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=72.49 E-value=13 Score=30.14 Aligned_cols=93 Identities=9% Similarity=0.082 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcC-ChhHHHHHHHHhHhCCCCCCccc---HHHHHH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNG-LLVESLTCFVRMIGSGVYPDHNV---FPSVLK 114 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~ 114 (219)
...+|.-|...|+.++|.+.++++..| . .++..++..++-+.. .-+.+..++..+.+.|+-+.... |..++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p-~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASP-SLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCG-GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 467888888888999998888888766 3 233344444443322 23556667777766654333222 333333
Q ss_pred HHhcc-cChhhHHHHHHHHHHh
Q 041894 115 SCTLL-VDFRFGESVHACIIRL 135 (219)
Q Consensus 115 ~~~~~-g~~~~a~~~~~~m~~~ 135 (219)
.+-.. -|...|...+..+...
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~~ 114 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVTP 114 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHGG
T ss_pred hChHhhcCccchHHHHHHHHHH
Confidence 33322 2566777776665543
No 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.94 E-value=26 Score=26.24 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=24.4
Q ss_pred CCcchhhHHHHhhcCC----CCCCeeehhHHHHHHhhh----hHhHHHcCCCCCC
Q 041894 171 NGGREASVHEVLDKIP----ERNGNVELSSGLAGCNKF----EKRVVSAGHDADL 217 (219)
Q Consensus 171 ~~g~~~~a~~l~~~m~----~~~~~~~~n~ll~~~~~~----~~~m~~~g~~pd~ 217 (219)
+.|..+-+.-+++.-. .++ ..-.+.+--|.... =+.+.+.|..|+.
T Consensus 228 ~~~~~~~v~~Ll~~~g~~~~~~~-~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 228 EKKHLGLVQRLLEQEHIEINDTD-SDGKTALLLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HTTCHHHHHHHHHSSSCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred HcCCHHHHHHHHhccCCCccccC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence 4455588888887322 223 33344444443222 2456777887775
No 255
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=70.16 E-value=6 Score=28.20 Aligned_cols=84 Identities=7% Similarity=0.086 Sum_probs=53.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC--hhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+.+|.-|...|+.++|.+.++++....+. ...+..++..+.-+.++ .+..-.++..+.+.|+-+.......+-..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 4678999999999999999999998521111 12344455556655432 44566777778777776665555555555
Q ss_pred HHhcCCc
Q 041894 151 YAQSQNM 157 (219)
Q Consensus 151 y~~~g~~ 157 (219)
+....++
T Consensus 90 l~~ldDl 96 (152)
T 2ion_A 90 YNEIPDI 96 (152)
T ss_dssp HHHHHHH
T ss_pred HHhChHh
Confidence 5544444
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.03 E-value=2.6 Score=34.69 Aligned_cols=84 Identities=7% Similarity=0.080 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC--hhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+.+|.-|...|+.++|.+.++++....+.+ ..+..++..+.-+.++ .+..-+++..+.+.|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 36788999999999999999998885321111 2334455555555433 34566777778777777666666666666
Q ss_pred HHhcCCc
Q 041894 151 YAQSQNM 157 (219)
Q Consensus 151 y~~~g~~ 157 (219)
+...-++
T Consensus 298 l~~ldDl 304 (358)
T 3eiq_C 298 YNEIPDI 304 (358)
T ss_dssp HHHHHHH
T ss_pred HHhccHh
Confidence 6555444
No 257
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=69.18 E-value=22 Score=29.14 Aligned_cols=68 Identities=16% Similarity=0.136 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHhHhCCCCCCcccH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDHNVF 109 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~ 109 (219)
..+.+|.-|...|+.++|.+.++++..| . .++..++..++-+.++ .+...+++..+.+.|+-+.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p-~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCC-cchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4689999999999999999999999877 4 3456666677766543 45688888888877755544333
No 258
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=67.08 E-value=26 Score=27.00 Aligned_cols=129 Identities=5% Similarity=-0.104 Sum_probs=56.3
Q ss_pred cccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCChhHHH
Q 041894 15 VSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGLLVESL 91 (219)
Q Consensus 15 ~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~~~~a~ 91 (219)
++.|+.+.+..+ .+.|..++..--.+.|..-++.|+.+-+..+++.=. .+ |..-++.|..+ +..|+.+-+.
T Consensus 39 ~~~g~~~~v~~L----l~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-d~~g~t~L~~A-~~~g~~~~v~ 112 (285)
T 3kea_A 39 IADNNVRLVCTL----LNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQF-DDKGNTALYYA-VDSGNMQTVK 112 (285)
T ss_dssp HHTTCHHHHHHH----HHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCC-CTTSCCHHHHH-HHTTCHHHHH
T ss_pred HHcCCHHHHHHH----HhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc-CCCCCcHHHHH-HHcCCHHHHH
Confidence 344555544333 344433332212334455556677666666665322 12 22223333333 3445554333
Q ss_pred HHHHHhHhCCCCCCcc---cHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH-HHHHHHHHHHhcCCc
Q 041894 92 TCFVRMIGSGVYPDHN---VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY-TNNALMNMYAQSQNM 157 (219)
Q Consensus 92 ~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~y~~~g~~ 157 (219)
.+ .+.|..|+.. -+.+.+...+..|..+ +.+.+.+.|..+... ...+.+..-++.|+.
T Consensus 113 ~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 113 LF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHV 174 (285)
T ss_dssp HH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCH
T ss_pred HH----HhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChH
Confidence 22 3334444322 2234444445556553 334444455433211 333445555566666
No 259
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=66.99 E-value=22 Score=22.66 Aligned_cols=63 Identities=5% Similarity=-0.064 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 041894 23 AKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVES 90 (219)
Q Consensus 23 a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a 90 (219)
...+++.+.+.|+- +..-+..+.. .....++|.++++.++.+ +..+|..+++++...+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~k-G~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKK-DNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHc-CHHHHHHHHHHHHHcCHHHHH
Confidence 45678888888754 3334444443 367789999999999998 899999999999988765544
No 260
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=66.36 E-value=31 Score=26.40 Aligned_cols=77 Identities=3% Similarity=-0.066 Sum_probs=39.3
Q ss_pred HHHHHhcCChhHHHHHHHHhHhC--CCCC----CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGS--GVYP----DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
|+-+....++++|.++.++..+. ++++ +.......++.=.....-..+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45556667777777777665421 2222 112223333333333333444455444522 44455566667777
Q ss_pred HhcCCc
Q 041894 152 AQSQNM 157 (219)
Q Consensus 152 ~~~g~~ 157 (219)
.|.|+.
T Consensus 102 ~rLg~~ 107 (235)
T 2d2s_A 102 IKLGLP 107 (235)
T ss_dssp HHTTCH
T ss_pred HHCCCh
Confidence 888888
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.01 E-value=50 Score=27.45 Aligned_cols=94 Identities=9% Similarity=-0.132 Sum_probs=64.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcC----CCC-ChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC-CCCCcccHHHHHH
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLK----TPA-PPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG-VYPDHNVFPSVLK 114 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~ 114 (219)
++..+-..|.+.|++++|.+.+.++. .++ -...|-.+|+.+...+++..+...+......- -.+++..-+- ++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~-lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR-YK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH-HH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH-HH
Confidence 56778889999999999999999886 220 34678888999999999999999988865321 1233332222 22
Q ss_pred HH-----hcccChhhHHHHHHHHHHh
Q 041894 115 SC-----TLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 115 ~~-----~~~g~~~~a~~~~~~m~~~ 135 (219)
.| ...+++..|-+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22 2447788887776665443
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=64.66 E-value=37 Score=24.49 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 041894 38 SRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 38 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~ 86 (219)
+..+-...+..+++.+..+....+.+.+..+ |...-...+.++.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDE-DAWVRRAAADALGQIGD 79 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCC-CHHHHHHHHHHHHhhCC
Confidence 4444444444444444433333344444444 44444444444444443
No 263
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=63.16 E-value=95 Score=28.71 Aligned_cols=143 Identities=8% Similarity=-0.089 Sum_probs=82.4
Q ss_pred HHHhCccccCC---hhHHHHHHHHHHHcC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 041894 9 NLLKNPVSIKT---KSQAKQLHAQIFKTL----EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCC 81 (219)
Q Consensus 9 ~ll~~~~~~~~---~~~a~~l~~~m~~~g----~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~ 81 (219)
.++...|+.|. .+.|.+.|+.....+ ++||.. +.+...-.+.|.-++-..+++.+....+..--..++.++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~~~~ek~~ll~aL 768 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQLVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Confidence 35555666665 557888888876543 566643 222233335577666666777766331555567889999
Q ss_pred HhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh------CCCccHHHHHHHHHHHHhcC
Q 041894 82 TQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL------GVDLDLYTNNALMNMYAQSQ 155 (219)
Q Consensus 82 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~y~~~g 155 (219)
+...+.....++++.............. .++.+... ....-..+++.+.++ .+......+..+|...+..-
T Consensus 769 ~~~~d~~~l~~~L~~~l~~~~ir~qd~~-~~~~~v~~--n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 769 ACSNEVWLLNRYLGYTLNPDLIRKQDAT-STINSIAS--NVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp TTCCCHHHHHHHHHHTTCTTTSCGGGHH-HHHHHHHH--STTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCchhhHH-HHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 9999988888888776644322223333 34444442 233333446666544 12233445667777766544
Q ss_pred C
Q 041894 156 N 156 (219)
Q Consensus 156 ~ 156 (219)
.
T Consensus 846 ~ 846 (909)
T 4fke_A 846 S 846 (909)
T ss_dssp C
T ss_pred C
Confidence 3
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=63.02 E-value=45 Score=24.87 Aligned_cols=118 Identities=11% Similarity=0.031 Sum_probs=63.1
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcHH---HHHHHHHHHhhcCCHHHHHHHHHhcCCC--CChhhHHHHHHHHHh
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSRF---LISRLLFIYNNFNLVHDSLCLLDTLKTP--APPVAWKSIIRCCTQ 83 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~li~~~~~ 83 (219)
+.|...++.|+.+....+ .+.|..++.. .-.+.|..-++.|+.+-+..+++.=..+ .|..-++.|..+ +.
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~ 81 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AI 81 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HH
Confidence 455556677887765554 4556544322 1134566667788888877777643222 022333334333 44
Q ss_pred cCChhHHHHHHHHhHhCCCCCCcc---cHHHHHHHHhcccChhhHHHHHHHHHHhCCCcc
Q 041894 84 NGLLVESLTCFVRMIGSGVYPDHN---VFPSVLKSCTLLVDFRFGESVHACIIRLGVDLD 140 (219)
Q Consensus 84 ~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 140 (219)
.|+.+ +++.+.+.|..++.. -++.+ ...+..|..+ +++.+.+.|..++
T Consensus 82 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~ 132 (285)
T 1wdy_A 82 AGSVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVK----ALKFLYKRGANVN 132 (285)
T ss_dssp HTCHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred cCCHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHH----HHHHHHHhCCCcc
Confidence 56654 444555566665532 33344 4444556654 4555566666554
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=62.21 E-value=92 Score=28.25 Aligned_cols=122 Identities=7% Similarity=0.038 Sum_probs=76.2
Q ss_pred HHHHHhCccccCC-hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC--HHHHHHHH-Hhc----------CCCCChh
Q 041894 7 LINLLKNPVSIKT-KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLL-DTL----------KTPAPPV 72 (219)
Q Consensus 7 ~~~ll~~~~~~~~-~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~A~~~~-~~m----------~~~~~~~ 72 (219)
..++++-+.-.++ .+.|..+|+.+.+..-..+.....++|..+.+.++ ++ |.+++ +.+ +.. +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~-av~ll~~~l~~~~~~~~~l~~~-~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELD-MITILNETLDPLLSLLNDLPPR-DAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHHHHHHHHHHTCSSC-CHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHhhhhhhhhccc-ccc
Confidence 3455555555656 47789999998877533333334455555544442 22 33332 222 222 321
Q ss_pred h---HH---HHH----HHHHhcCChhHHHHHHHHhHhCCCCCC-cccHHHHHHHHhcccChhhHHHHHHHH
Q 041894 73 A---WK---SII----RCCTQNGLLVESLTCFVRMIGSGVYPD-HNVFPSVLKSCTLLVDFRFGESVHACI 132 (219)
Q Consensus 73 ~---~~---~li----~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m 132 (219)
. .+ .|+ +-+...|+++-|+++=+.-.. ..|+ ..+|..|..+|...|+++.|.-.+..+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11 122 335567999999988877554 4676 569999999999999999999888875
No 266
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=61.51 E-value=20 Score=24.10 Aligned_cols=71 Identities=8% Similarity=0.044 Sum_probs=47.4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhHh-CCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMIG-SGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
|......+|+.+-.. ++.|+++..+..+ .|+ ...++..++....+.|-++.. +.|..|.+.. ...+++|+.
T Consensus 20 ~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m~~~R-N~~vH~Y~~ 91 (119)
T 1wty_A 20 DEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEMLELR-NLTNHTYDE 91 (119)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHHHHHH-HHGGGTTSH
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHh-hHhcccccH
Confidence 677778888888775 7788888877553 566 466888888888888888776 4444443321 133444444
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=61.10 E-value=26 Score=27.98 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=41.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCC---hhhHHHHHHHHHhcCC--hhHHHHHHHHhHhCCCCCCc
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAP---PVAWKSIIRCCTQNGL--LVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 106 (219)
...+|.-|...|+.++|.+.++++..| . .++..++..++-+.++ .+...+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 467788888888888888888888765 3 2445555556655433 35566777777666544433
No 268
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=59.16 E-value=17 Score=28.91 Aligned_cols=88 Identities=10% Similarity=-0.039 Sum_probs=45.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcCCCCCh-hhHHHHHHHHHhcCC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLKTPAPP-VAWKSIIRCCTQNGL 86 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~li~~~~~~g~ 86 (219)
.|...+..|+.+....++ +.|..++... -.+.|..-++.|+.+-+..+++.-... +. .-++. +...+..|+
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~g~t~-L~~A~~~g~ 96 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-SLWHGQKP-IHLAVMANK 96 (364)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-CCBTTBCH-HHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-cccCCCCH-HHHHHHcCC
Confidence 344445667776655544 4565443321 123455556677887777777654433 32 22333 333345577
Q ss_pred hhHHHHHHHHhHhCCCC
Q 041894 87 LVESLTCFVRMIGSGVY 103 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~ 103 (219)
.+-+..+++.-...|..
T Consensus 97 ~~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccccCCC
Confidence 76665555543333433
No 269
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=58.10 E-value=56 Score=24.41 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=43.6
Q ss_pred HHHHHHHhc---CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC-----hhhHHHHHHHHHHhCC
Q 041894 76 SIIRCCTQN---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD-----FRFGESVHACIIRLGV 137 (219)
Q Consensus 76 ~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~-----~~~a~~~~~~m~~~g~ 137 (219)
-+|+++.|+ .+++.|+..+.+|++.| -|....=-.++-++-+.|. +..|...++.....|+
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 356666554 78999999999999999 6666555667777777775 3355555666667775
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.37 E-value=34 Score=28.46 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC--cccHHHHHHHHhcccChhhHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD--HNVFPSVLKSCTLLVDFRFGESVHACIIR 134 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 134 (219)
+...+-.-|.+.|++++|.+.|.+++..-..+. ...+-.+|..|...+++..+.........
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 577788899999999999999999986544444 35677888999999999999988887643
No 271
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.94 E-value=56 Score=23.73 Aligned_cols=148 Identities=9% Similarity=0.024 Sum_probs=73.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC-------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCccc--HHHHHHH
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK-------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV--FPSVLKS 115 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~ 115 (219)
.|..-++.|+.+-+..+++.+. .+ |..-++.| ...+..|+.+ +++.+.+.|..|+... -.+.+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPL-HLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHH-HHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHH
Confidence 3555567788888877776432 22 33333444 4444566665 3444555666555432 1233444
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccH--HHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCC---
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDL--YTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNG--- 190 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~--- 190 (219)
.+..|..+..+.+++.-...++.++. ....+.+..-++.|+. +-+.-+++.-...+.
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~------------------~~~~~Ll~~g~~~~~~~~ 147 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQ------------------ETVQLLLERGADIDAVDI 147 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCH------------------HHHHHHHHTTCCTTCCCT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCH------------------HHHHHHHHcCCCcccccc
Confidence 45566665444443322211123322 1223344555566666 888888876443320
Q ss_pred eeehhHHHHHHhhhh-----HhHHHcCCCCCC
Q 041894 191 NVELSSGLAGCNKFE-----KRVVSAGHDADL 217 (219)
Q Consensus 191 ~~~~n~ll~~~~~~~-----~~m~~~g~~pd~ 217 (219)
...++.+..+ ++.| +.+.+.|..++.
T Consensus 148 ~~g~t~L~~A-~~~~~~~~v~~Ll~~g~~~~~ 178 (241)
T 1k1a_A 148 KSGRSPLIHA-VENNSLSMVQLLLQHGANVNA 178 (241)
T ss_dssp TTCCCHHHHH-HHTTCHHHHHHHHHTTCCTTC
T ss_pred cCCCcHHHHH-HHcCCHHHHHHHHHcCCCCCC
Confidence 1123444444 3444 356677877664
No 272
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=55.82 E-value=63 Score=24.31 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhc---CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh-----hhHHHHHHHHHHhCC
Q 041894 73 AWKSIIRCCTQN---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF-----RFGESVHACIIRLGV 137 (219)
Q Consensus 73 ~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~ 137 (219)
..=-+|+++.|+ .+++.|+..+.+|++.|--|....=-.++-++-+.|.. ..|...++...+.|+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 334466676664 78999999999999999888776666677777777753 345555666666675
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=54.71 E-value=35 Score=24.55 Aligned_cols=52 Identities=12% Similarity=0.088 Sum_probs=27.4
Q ss_pred HHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH
Q 041894 90 SLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 90 a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 141 (219)
+..+|..|..+||--.. .-|...-..+...|++..|..|+..=++++-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 44456666666554332 23444444445556666666666655555555543
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=54.66 E-value=1.5e+02 Score=28.17 Aligned_cols=111 Identities=11% Similarity=0.057 Sum_probs=69.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC------------------
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD------------------ 105 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------------------ 105 (219)
.++..+.+.+..+-|.++..-.+.. ...+| .+=.+|...|++++|.+.|.+-- .|+.++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~y-l~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSD-PIAVY-LKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCC-HHHHH-HHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCC-cHHHH-HHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhccccccccccc
Confidence 4555666677777777766555442 22222 22356777899999999997642 122111
Q ss_pred -----cccHHHHHHHHhcccChhhHHHHHHHHHHhCC-C-cc--HHHHHHHHHHHHhcCCc
Q 041894 106 -----HNVFPSVLKSCTLLVDFRFGESVHACIIRLGV-D-LD--LYTNNALMNMYAQSQNM 157 (219)
Q Consensus 106 -----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~-~~--~~~~~~ll~~y~~~g~~ 157 (219)
..-|.-++.-+.+.+..+.+.++-..-.+..- . ++ ...|..+.++....|++
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 12366677788888888887777555444322 1 22 23688999999999999
No 275
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.10 E-value=96 Score=25.90 Aligned_cols=162 Identities=8% Similarity=0.025 Sum_probs=97.4
Q ss_pred HHHhCccccCChhHHHHHHHHHHH--cCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhcC------CC-CC--hhhH
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFK--TLEPNS---RFLISRLLFIYNNFNLVHDSLCLLDTLK------TP-AP--PVAW 74 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~--~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~------~~-~~--~~~~ 74 (219)
.+-+.+-..|++..|..+...+.. .|.... ...+...+..|...+++..|..+..... .+ ++ ..-|
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 344556677899999988888743 232222 2467778888999999999988887653 11 01 2346
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhHhC-CCCCCcccHHHHHH----HHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHH
Q 041894 75 KSIIRCCTQNGLLVESLTCFVRMIGS-GVYPDHNVFPSVLK----SCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMN 149 (219)
Q Consensus 75 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 149 (219)
...+.-+...+++.+|.+.|.+.... .+.-|...+..++. +..-++....-..+.....+..-.++...|..|+.
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k 301 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVK 301 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHH
Confidence 66777777788999998888886543 12223222222222 22222222222333344444444577888999999
Q ss_pred HHHhc--CCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC
Q 041894 150 MYAQS--QNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER 188 (219)
Q Consensus 150 ~y~~~--g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~ 188 (219)
+|... .++ +.+.+.|.....+
T Consensus 302 ~f~~~~L~~~------------------~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 302 LFTTNELMRW------------------PIVQKTYEPVLNE 324 (445)
T ss_dssp HHHHCCSSSH------------------HHHHHHTCSSTTT
T ss_pred HHHhchHhhh------------------HHHHHHHHHHhcc
Confidence 99764 344 6777777665443
No 276
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=53.62 E-value=59 Score=24.23 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHHHHHhc---CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccCh-----hhHHHHHHHHHHhCC
Q 041894 76 SIIRCCTQN---GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDF-----RFGESVHACIIRLGV 137 (219)
Q Consensus 76 ~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~ 137 (219)
-+|+++.|+ .+++.|+..+.+|++.|--|....=-.++-++-+.|.. ..|...++.....|+
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 356666554 78999999999999999777766656667777777653 344444555555563
No 277
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=49.88 E-value=29 Score=28.45 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhcCCCCC----hhhHHHHHHHHHhcCC-hhHHHHHHHHhHhCCCCCCc
Q 041894 41 LISRLLFIYNNFNLVHDSLCLLDTLKTPAP----PVAWKSIIRCCTQNGL-LVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 41 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~ 106 (219)
...++|.-|...|++++|...++++..| + .+.+..+..++-+... -+.+-.++..+...++-+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p-~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAP-KHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCC-GGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCc-hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 3467888888888888888888888777 5 2344444444443321 25556666666666554333
No 278
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.69 E-value=24 Score=28.25 Aligned_cols=84 Identities=7% Similarity=0.087 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC--hhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
..+.+|.-|...|+.++|.+.++++....+.| ..+..++..+.-+.++ .+..-.++..+.+.|+-+.......+-..
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 46678999999999999999999985211111 2334445555555433 34556778888877776665555555555
Q ss_pred HHhcCCc
Q 041894 151 YAQSQNM 157 (219)
Q Consensus 151 y~~~g~~ 157 (219)
+...-+.
T Consensus 247 l~~l~Dl 253 (307)
T 2zu6_B 247 YNEIPDI 253 (307)
T ss_dssp HHHHHHH
T ss_pred HHhccHh
Confidence 5544443
No 279
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=48.20 E-value=20 Score=24.34 Aligned_cols=112 Identities=12% Similarity=0.000 Sum_probs=57.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLE-PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT---PAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~li~~~~~~g 85 (219)
.|...++.|+.+....+++. ..... ..+..-. +.+.. +..|+.+-+..+++.=.. + |..-++.|..+ +..|
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~-t~L~~-~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A-~~~~ 79 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGK-TALQV-MMFGSTAIALELLKQGASPNVQ-DTSGTSPVHDA-ARTG 79 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSC-CHHHH-SCTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHH-HHTT
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCC-cHHHH-HHcCCHHHHHHHHHCCCCCCCc-CCCCCCHHHHH-HHcC
Confidence 44455677888888777766 21111 1122222 33444 778888877777765322 2 33334444444 4456
Q ss_pred ChhHHHHHHHHhHhCCCCCCc---ccHHHHHHHHhcccChhhHHHHHHH
Q 041894 86 LLVESLTCFVRMIGSGVYPDH---NVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
+.+-+ +.+.+.|..|+. .-.+.+ ...+..|..+..+.+++.
T Consensus 80 ~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 80 FLDTL----KVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp CHHHH----HHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT
T ss_pred cHHHH----HHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc
Confidence 66533 344455655443 333343 444456776655555443
No 280
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=48.08 E-value=45 Score=24.09 Aligned_cols=54 Identities=6% Similarity=-0.031 Sum_probs=30.6
Q ss_pred HhCccccCChhHHHHHHHHHHHcC-CCCcH-------HHHHHHHHHHhhcCCHHHHHHHHHh
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTL-EPNSR-------FLISRLLFIYNNFNLVHDSLCLLDT 64 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~ 64 (219)
++.+...+.++.|+.+-+.+.... -.|+. .++.-+-+++...+++..|...|++
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~q 88 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTM 88 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 444555666777776666654432 22221 1344455566677777777777665
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.20 E-value=43 Score=25.46 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHH
Q 041894 123 RFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~ 201 (219)
+....+|..|.++|+=. -..-|...-..+-..|++ .+|.++|+.-...+ ..+..-|...|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~------------------~~A~~Vy~~Gi~~~-A~P~~rL~~~~ 191 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLF------------------QKADEVYQKGKRMK-AKPFLRFQQKY 191 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHHT-CBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 46778888888887743 455566666677777777 99999998877777 88888888888
Q ss_pred hhhhHhHHH
Q 041894 202 NKFEKRVVS 210 (219)
Q Consensus 202 ~~~~~~m~~ 210 (219)
..-..+|.+
T Consensus 192 ~~F~~R~~~ 200 (223)
T 4aez_C 192 QQFTHRWLE 200 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888777433
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=46.96 E-value=70 Score=25.09 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=19.7
Q ss_pred hhcCCHHHHHHHHHh-cC-CCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 041894 50 NNFNLVHDSLCLLDT-LK-TPAPPVAWKSIIRCCTQNGLLVESLTCFVR 96 (219)
Q Consensus 50 ~~~g~~~~A~~~~~~-m~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 96 (219)
.+.|++++|+..... ++ .|.|...=..+++-+|-.|+++.|.+=++-
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444444322 22 222444444444444444444444444433
No 283
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=46.86 E-value=64 Score=21.89 Aligned_cols=101 Identities=7% Similarity=0.003 Sum_probs=44.3
Q ss_pred HHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCccc---HHHHHHHHhc
Q 041894 46 LFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV---FPSVLKSCTL 118 (219)
Q Consensus 46 l~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~ 118 (219)
+...++.|+.+.+..+++.-. .. +..-++.|. ..+..|+.+ +++.+.+.|..|+... .+.+ ...+.
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 84 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLH-FAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPL-HNACS 84 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHH
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHH-HHHHcChHH----HHHHHHhcCCCCCccCCCCCCHH-HHHHH
Confidence 344455666666666655322 11 222223333 333455544 3334444555554322 2333 33334
Q ss_pred ccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCc
Q 041894 119 LVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQSQNM 157 (219)
Q Consensus 119 ~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~g~~ 157 (219)
.|..+ +.+.+.+.|..++... -.+.+..-++.|+.
T Consensus 85 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 121 (165)
T 3twr_A 85 YGHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKY 121 (165)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred cCcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 45554 3444455565544221 11234444555666
No 284
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=45.67 E-value=40 Score=24.35 Aligned_cols=176 Identities=12% Similarity=0.047 Sum_probs=88.4
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCC-----CChhhHHHHHHHHHhcC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTP-----APPVAWKSIIRCCTQNG 85 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~li~~~~~~g 85 (219)
|...++.|+.+....+++.-...-...+..- .+.+..-++.|+.+-+..+++.-..+ .|..-++.+..+. ..|
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~-~~~ 83 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC-SVG 83 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTS-CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH-HHC
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCC-CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH-HcC
Confidence 4445667887776666554221111122222 23444556778888888887765322 0223344444444 456
Q ss_pred ChhHHHHHHHHhHhCC--CCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH--HHHHHHHHHHhcCCch
Q 041894 86 LLVESLTCFVRMIGSG--VYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY--TNNALMNMYAQSQNMD 158 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g--~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~y~~~g~~~ 158 (219)
+.+ +++.+.+.| ..++ ..-.+.+ ...+..|..+ +.+.+.+.|..++.. ...+.+..-++.|+.
T Consensus 84 ~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~- 153 (228)
T 2dzn_A 84 NLE----VVKSLYDRPLKPDLNKITNQGVTCL-HLAVGKKWFE----VSQFLIENGASVRIKDKFNQIPLHRAASVGSL- 153 (228)
T ss_dssp CHH----HHHHHHSSSSCCCTTCCCTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH-
T ss_pred CHH----HHHHHHhCCCCcccccCCcCCCCHH-HHHHHcCCHh----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCH-
Confidence 655 444455555 2222 2233343 4444556664 444455667665432 122335555667777
Q ss_pred hHHHHHhhhhccCCcchhhHHHHhhcC-C---CCCCeeehhHHHHHHhhhh-----HhHH-HcCCCCCC
Q 041894 159 MHIYDRFQGFGFNGGREASVHEVLDKI-P---ERNGNVELSSGLAGCNKFE-----KRVV-SAGHDADL 217 (219)
Q Consensus 159 ~~~~~~~~~~~~~~g~~~~a~~l~~~m-~---~~~~~~~~n~ll~~~~~~~-----~~m~-~~g~~pd~ 217 (219)
+-+.-+++.- . .++ ..-++.+..+. +.| +.+. +.|..|+.
T Consensus 154 -----------------~~v~~Ll~~g~~~~~~~d-~~g~t~L~~A~-~~~~~~~v~~Ll~~~ga~~~~ 203 (228)
T 2dzn_A 154 -----------------KLIELLCGLGKSAVNWQD-KQGWTPLFHAL-AEGHGDAAVLLVEKYGAEYDL 203 (228)
T ss_dssp -----------------HHHHHHHTTTCCCSCCCC-TTSCCHHHHHH-HTTCHHHHHHHHHHHCCCSCC
T ss_pred -----------------HHHHHHHhcCcccccCcC-CCCCCHHHHHH-HcCCHHHHHHHHHhcCCCCCc
Confidence 7777777654 2 123 33344444443 233 2344 66776664
No 285
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=44.69 E-value=25 Score=20.69 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhHhC-CCCCCcccHHHHHHHH-hcc
Q 041894 87 LVESLTCFVRMIGS-GVYPDHNVFPSVLKSC-TLL 119 (219)
Q Consensus 87 ~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~-~~~ 119 (219)
.++|...|.+|++. +|.|+. ||.-+|+.+ ++-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~w-sweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTW-SFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSC-CHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCC-cHHHHHHHhccCC
Confidence 46888889898754 555554 898888888 544
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=44.43 E-value=67 Score=22.53 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=7.0
Q ss_pred HHHHHHHHHhCCCcc
Q 041894 126 ESVHACIIRLGVDLD 140 (219)
Q Consensus 126 ~~~~~~m~~~g~~~~ 140 (219)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 344444555554443
No 287
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=44.20 E-value=72 Score=22.27 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=63.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHhH-hCCCCC---CcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHH
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCFVRMI-GSGVYP---DHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNN 145 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 145 (219)
|......+|+.+-.. ++.|+++..+.. ..|+.| +..++.-++....+.|-++.......++..++ ..+++|+
T Consensus 39 ~~~~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~~w~~m~~~RN--~tvH~Y~ 114 (146)
T 1jog_A 39 QDTLIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRN--ITSHTYD 114 (146)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHHHHHHHHHHHT--TGGGTTS
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHHHHHHHHHHhh--Hhccccc
Confidence 445566777777765 777888887755 357665 47799999999999999988844444444444 3455555
Q ss_pred HHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCC
Q 041894 146 ALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERN 189 (219)
Q Consensus 146 ~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~ 189 (219)
... ...+|+.|..|. ....++.+.+.+++
T Consensus 115 e~~---------a~~v~~~I~~~l------~~f~~l~~~l~~~~ 143 (146)
T 1jog_A 115 QEK---------AMAVYAQIDDFL------IESSFLLEQLRQRN 143 (146)
T ss_dssp HHH---------HHHHHHTHHHHH------HHHHHHHHHHHC--
T ss_pred Hhh---------HHHHHHHHHHHH------HHHHHHHHHHHhhh
Confidence 422 122445555555 77777777766544
No 288
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=43.52 E-value=9.5 Score=28.70 Aligned_cols=121 Identities=10% Similarity=-0.074 Sum_probs=67.7
Q ss_pred HHHhCccccCChhHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHhhc---CCHHHHHHHHHhcCCC----------
Q 041894 9 NLLKNPVSIKTKSQAKQLHAQIFKTLEPNSR-------FLISRLLFIYNNF---NLVHDSLCLLDTLKTP---------- 68 (219)
Q Consensus 9 ~ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~-------~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~---------- 68 (219)
+.|...++.|+.+....+++.+.+.|..++. .-.+.|.. -+.. |+.+-+..+++.-..+
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 82 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQ 82 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCcccchhhhcccc
Confidence 3455566789999888888888888865543 23344443 3444 7777777776542211
Q ss_pred ---CChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc----------------cHHHHHHHHhcccChhhHHHHH
Q 041894 69 ---APPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN----------------VFPSVLKSCTLLVDFRFGESVH 129 (219)
Q Consensus 69 ---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------------t~~~ll~~~~~~g~~~~a~~~~ 129 (219)
.|..-++.|..+ +..|+.+-+ +.+.+.|..++.. -.+.| ...+..|..+ +.
T Consensus 83 ~~~~d~~g~t~L~~A-~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL-~~A~~~~~~~----~v 152 (256)
T 2etb_A 83 CTDEFYQGHSALHIA-IEKRSLQCV----KLLVENGADVHLRACGRFFQKHQGTCFYFGELPL-SLAACTKQWD----VV 152 (256)
T ss_dssp CCSTTTTTCCHHHHH-HHTTCHHHH----HHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHH-HHHHHTTCHH----HH
T ss_pred cccccccCCCHHHHH-HHcCCHHHH----HHHHHcCCCCCcccccccccccccccccCCCCHH-HHHHHcCCHH----HH
Confidence 022334444444 456766544 3445566666543 23444 4444556664 45
Q ss_pred HHHHH---hCCCcc
Q 041894 130 ACIIR---LGVDLD 140 (219)
Q Consensus 130 ~~m~~---~g~~~~ 140 (219)
+.+.+ .|..++
T Consensus 153 ~~Ll~~~~~ga~~n 166 (256)
T 2etb_A 153 TYLLENPHQPASLE 166 (256)
T ss_dssp HHHHHCSSCCCCTT
T ss_pred HHHHhccccCCCcC
Confidence 55556 665553
No 289
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=42.91 E-value=71 Score=21.20 Aligned_cols=62 Identities=13% Similarity=-0.134 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHhHhCCCCCCcccHHHHH--HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNVFPSVL--KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..++|..+=+-+...+. .-..++| .+....|++++|..+.+.+ ..||...|-+|-. .|.|..
T Consensus 22 ~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~ 85 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLG 85 (116)
T ss_dssp CHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCH
T ss_pred HHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccH
Confidence 35667666655555442 2223333 3445667777776664443 3677777766643 355555
No 290
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=42.71 E-value=3.7 Score=26.21 Aligned_cols=28 Identities=7% Similarity=-0.056 Sum_probs=20.1
Q ss_pred hhHHHHhhcCCCCCCeeehhHHHHHHhhhh
Q 041894 176 ASVHEVLDKIPERNGNVELSSGLAGCNKFE 205 (219)
Q Consensus 176 ~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~ 205 (219)
++|..+--++. .+ ..+|.++|++|++.|
T Consensus 21 EeA~~~QYeL~-k~-~avyRvFiNgYAk~g 48 (96)
T 2f40_A 21 EEAKIVQYELS-TR-DEFYRVFINPYAKVA 48 (96)
T ss_dssp TTTHHHHHTTT-TT-TTBCCCCCCTTTTCC
T ss_pred HHHHHHHHHhh-cc-hhhhhheeccccccc
Confidence 55555444433 34 588999999999998
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.68 E-value=91 Score=22.06 Aligned_cols=113 Identities=13% Similarity=0.054 Sum_probs=79.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
.++..+-...+..+++.+..+....+.+.+..+ |...-...+.++...|..+. ...+.++..+ |+..+=...+.+
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~d---~~~~vr~~a~~a 99 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDE-DAWVRRAAADALGQIGDERA-VEPLIKALKD---EDGWVRQSAAVA 99 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCGGG-HHHHHHHTTC---SSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCC-CHHHHHHHHHHHHhhCCHHH-HHHHHHHHcC---CCHHHHHHHHHH
Confidence 567777777788888888766677777777777 88777788888888887644 4445455443 666677777888
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
..+.++.+....+...+ -.++..+=...+.++++.|..
T Consensus 100 L~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~ 137 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDE 137 (201)
T ss_dssp HHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCG
T ss_pred HHHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCH
Confidence 88888765444444433 246666777778888888876
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=41.24 E-value=30 Score=25.79 Aligned_cols=121 Identities=10% Similarity=-0.081 Sum_probs=69.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHH-------HHHHHHHHh--hcCCHHHHHHHHHhcC--------------
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL-------ISRLLFIYN--NFNLVHDSLCLLDTLK-------------- 66 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~-------~~~ll~~~~--~~g~~~~A~~~~~~m~-------------- 66 (219)
.|...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34455678999999999998888886655332 344444432 6688777777776421
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCccc----------------HHHHHHHHhcccChhhHHHHHH
Q 041894 67 TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNV----------------FPSVLKSCTLLVDFRFGESVHA 130 (219)
Q Consensus 67 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t----------------~~~ll~~~~~~g~~~~a~~~~~ 130 (219)
.. |..-++.|..+ +..|+.+-+ +.+.+.|..++... -.+.|...+..|..+ +.+
T Consensus 88 ~~-d~~g~t~L~~A-~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~----~v~ 157 (260)
T 3jxi_A 88 DV-YYRGQTALHIA-IERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH----IVH 157 (260)
T ss_dssp CS-SEESBCHHHHH-HHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHH----HHH
T ss_pred cc-ccCCCCHHHHH-HHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHH----HHH
Confidence 11 22334444444 445776643 34455676666543 223444445567764 455
Q ss_pred HHHH---hCCCcc
Q 041894 131 CIIR---LGVDLD 140 (219)
Q Consensus 131 ~m~~---~g~~~~ 140 (219)
.+.+ .|..++
T Consensus 158 ~Ll~~~~~ga~~~ 170 (260)
T 3jxi_A 158 YLTENGHKQADLR 170 (260)
T ss_dssp HHHHCSSCCCCTT
T ss_pred HHHhccccCCCCc
Confidence 5556 566554
No 293
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.85 E-value=31 Score=23.77 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=21.2
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFN 53 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g 53 (219)
|..+...+..-.|.++++.+.+.+...+..|.-.-|..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333344444455555555555544445554444455555544
No 294
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=40.52 E-value=21 Score=28.83 Aligned_cols=82 Identities=11% Similarity=0.011 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhccc-ChhhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHACIIRLGVDLDLYTNNALMNMY 151 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y 151 (219)
..+.+|.-|...|+.++|.+.++++......| ..+...+..+.-+.. ..+..-.++..+.+.|+-+.......+-+.+
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 36778999999999999999999885222111 123333344443322 2334446677777666655444444444444
Q ss_pred HhcC
Q 041894 152 AQSQ 155 (219)
Q Consensus 152 ~~~g 155 (219)
....
T Consensus 92 ~~l~ 95 (339)
T 1ug3_A 92 ELAE 95 (339)
T ss_dssp HHHH
T ss_pred hhCh
Confidence 4433
No 295
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=40.18 E-value=1.5e+02 Score=24.27 Aligned_cols=105 Identities=9% Similarity=-0.074 Sum_probs=62.0
Q ss_pred HHHHhCccccCC---hhHHHHHHHHHHHcC----CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHH
Q 041894 8 INLLKNPVSIKT---KSQAKQLHAQIFKTL----EPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRC 80 (219)
Q Consensus 8 ~~ll~~~~~~~~---~~~a~~l~~~m~~~g----~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~ 80 (219)
..++...|..|+ .+.|.++|+...+.+ ++||... .+.+.+- ++-++-..+++.+....+..-=+.++.+
T Consensus 201 ~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~---~Vy~~~~-~~~~~~~~l~~~y~~s~~~~ek~~ll~a 276 (419)
T 3rjo_A 201 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL---AVFAVGA-QSTEGWDFLYSKYQFSLSSTEKSQIEFA 276 (419)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHH---HHHHHHT-TSHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcce---eEEeeee-CCHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 345555666665 667888888877643 5665542 1222221 1234445556655533155667788999
Q ss_pred HHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 041894 81 CTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCT 117 (219)
Q Consensus 81 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 117 (219)
++...++....++++......+.+...... ++.+.+
T Consensus 277 L~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~ 312 (419)
T 3rjo_A 277 LCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIG 312 (419)
T ss_dssp HTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHh
Confidence 999999988888887766655423343333 344444
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.72 E-value=98 Score=21.87 Aligned_cols=67 Identities=9% Similarity=-0.014 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHH
Q 041894 123 RFGESVHACIIRLGVDL-DLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGC 201 (219)
Q Consensus 123 ~~a~~~~~~m~~~g~~~-~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~ 201 (219)
++...+|..|.++|+=. -..-|.+.-..+-..|++ .+|.++|+.-.+.+ ..+..-|...|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~------------------~~A~~Vy~~Gi~~~-A~P~~rL~~~~ 142 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGEL------------------QHASAVLQRGIQNQ-AEPREFLQQQY 142 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCH------------------HHHHHHHHHHHHTT-CBSHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCH------------------HHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 45788899998888743 455666777777777888 99999999888777 88888888887
Q ss_pred hhhhHhH
Q 041894 202 NKFEKRV 208 (219)
Q Consensus 202 ~~~~~~m 208 (219)
..--.+|
T Consensus 143 ~~F~~R~ 149 (152)
T 4a1g_A 143 RLFQTRL 149 (152)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 6654443
No 297
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=39.57 E-value=96 Score=21.74 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=30.1
Q ss_pred cChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 120 VDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 120 g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
.+...+..+++.+.+.+........--|--++.|.|++ ++|+++.+.+.
T Consensus 56 ~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y------------------~~Ar~y~d~lL 104 (144)
T 1y8m_A 56 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY------------------SMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH------------------HHHHHHHHHHH
Confidence 34556777777777655322222233334567777777 88888877665
No 298
>2lti_A Astexin1; sidechain-TO-backbone LINK, lasso peptide, antimic protein; NMR {Asticcacaulis excentricus}
Probab=37.81 E-value=9.1 Score=17.75 Aligned_cols=8 Identities=38% Similarity=0.713 Sum_probs=6.4
Q ss_pred HcCCCCCC
Q 041894 210 SAGHDADL 217 (219)
Q Consensus 210 ~~g~~pd~ 217 (219)
+.||+||+
T Consensus 3 sqgvepdi 10 (26)
T 2lti_A 3 SQGVEPDI 10 (26)
T ss_dssp SSSSSCCB
T ss_pred ccccCCCc
Confidence 56899986
No 299
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.49 E-value=1.1e+02 Score=21.89 Aligned_cols=176 Identities=12% Similarity=0.018 Sum_probs=90.3
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcCC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNGL 86 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g~ 86 (219)
.|...++.|+.+....+++.-...--.++..- .+.|..-++.|+.+-+..+++.=. .+ |..-++.|..+ +..|+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g-~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A-~~~~~ 85 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDS-RTALHWACSAGHTEIVEFLLQLGVPVNDK-DDAGWSPLHIA-ASAGX 85 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTS-CCHHHHHHHHTCHHHHHHHHHTTCCSCCC-CTTSCCHHHHH-HHHTC
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCC-CCHHHHHHHcCcHHHHHHHHHhCCCCCCc-CCCCCCHHHHH-HHcCH
Confidence 35556677888877776654221111112222 234445566778877777766422 22 33334444444 34466
Q ss_pred hhHHHHHHHHhHhCCCCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCchhHH
Q 041894 87 LVESLTCFVRMIGSGVYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQSQNMDMHI 161 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~g~~~~~~ 161 (219)
.+ +++.+.+.|..++. .-.+.+ ...+..|..+ +.+.+.+.|..++... ..+.+...++.|+.
T Consensus 86 ~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~---- 152 (231)
T 3aji_A 86 DE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNL---- 152 (231)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH----
T ss_pred HH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH----
Confidence 54 34445556655543 223344 4444556654 4444556676654322 22345555666777
Q ss_pred HHHhhhhccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhhh-----HhHHHcCCCCCC
Q 041894 162 YDRFQGFGFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKFE-----KRVVSAGHDADL 217 (219)
Q Consensus 162 ~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~~-----~~m~~~g~~pd~ 217 (219)
+-+.-+++.-... + ..-.+.+..+ ++.| +.+.+.|..|+.
T Consensus 153 --------------~~v~~Ll~~g~~~~~~~-~~g~t~L~~A-~~~~~~~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 153 --------------KMVHILLFYKASTNIQD-TEGNTPLHLA-CDEERVEEAKFLVTQGASIYI 200 (231)
T ss_dssp --------------HHHHHHHHTTCCSCCCC-TTSCCHHHHH-HHTTCHHHHHHHHHTTCCSCC
T ss_pred --------------HHHHHHHhcCCCccccC-CCCCCHHHHH-HHCCCHHHHHHHHHCCCCCCC
Confidence 8777777643322 2 2234444444 3333 456777887764
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.20 E-value=35 Score=26.19 Aligned_cols=112 Identities=8% Similarity=-0.024 Sum_probs=60.1
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g 85 (219)
|...++.|+.+-+. .+.+.|..++... -.+.|..-+..|+.+-+..+++.=. .+ |..-|.+.+...+..|
T Consensus 66 L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~-~~~g~~t~L~~A~~~~ 140 (285)
T 3kea_A 66 LHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY-GKTGWKTSFYHAVMLN 140 (285)
T ss_dssp HHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC-SSSGGGSHHHHHHHTT
T ss_pred HHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcC
Confidence 33445566666544 4455675544321 1234445567788888777776522 22 3333345555556677
Q ss_pred ChhHHHHHHHHhHhCCCCC-CcccHHHHHHHHhcccChhhHHHHHHH
Q 041894 86 LLVESLTCFVRMIGSGVYP-DHNVFPSVLKSCTLLVDFRFGESVHAC 131 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~ 131 (219)
+.+-+ +.+.+.|..+ +...-.+.+...+..|..+.++.+++.
T Consensus 141 ~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 141 DVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp CHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 76543 3444555443 221444556666677887766655544
No 301
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=36.83 E-value=69 Score=21.25 Aligned_cols=61 Identities=11% Similarity=-0.160 Sum_probs=29.7
Q ss_pred hhHHHHHHHHhHhCCCCCCcccHHHHH--HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 87 LVESLTCFVRMIGSGVYPDHNVFPSVL--KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 87 ~~~a~~~~~~m~~~g~~p~~~t~~~ll--~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.++|..+=+-+...+. .-..++| .+....|++++|..+.+.+ ..||...|-+|-. .|.|..
T Consensus 22 HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~ 84 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLG 84 (115)
T ss_dssp HHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCH
T ss_pred HHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccH
Confidence 4666655555444432 2222333 3334556666665554333 3566666665533 344555
No 302
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.77 E-value=33 Score=23.27 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=25.4
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNL 54 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 54 (219)
+|..+...+..-.|.++++.+.+.+...+..|....|..+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 334444445555666666666666555555555555566655553
No 303
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=36.48 E-value=80 Score=22.16 Aligned_cols=69 Identities=4% Similarity=-0.106 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHHhhcCC---HHHHHHHHHhcC--CCCChhhHH-HHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 36 PNSRFLISRLLFIYNNFNL---VHDSLCLLDTLK--TPAPPVAWK-SIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~m~--~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
.|+..+--.+--++.++.+ .+++..++.++- .|.+..-|- -|--++.+.|++++|.++.+.+++. +|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCc
Confidence 4555554444445555554 455666766653 220222222 2346778889999999888888774 6764
No 304
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=36.46 E-value=1.1e+02 Score=22.11 Aligned_cols=28 Identities=11% Similarity=-0.034 Sum_probs=22.3
Q ss_pred HHHHHHhCccccCChhHHHHHHHHHHHc
Q 041894 6 TLINLLKNPVSIKTKSQAKQLHAQIFKT 33 (219)
Q Consensus 6 ~~~~ll~~~~~~~~~~~a~~l~~~m~~~ 33 (219)
++..+-.++...+.+.+|...|.+.++.
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4555667888999999999999997543
No 305
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=36.32 E-value=98 Score=22.06 Aligned_cols=56 Identities=5% Similarity=-0.046 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCCCCCh--hhHHHHHHHHHhcCCh--hHHHHHHHHhH
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKTPAPP--VAWKSIIRCCTQNGLL--VESLTCFVRMI 98 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~li~~~~~~g~~--~~a~~~~~~m~ 98 (219)
...+|.-|...++.++|..-++++..| +. ..-..+|..-...++. +.+-.++..+.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p-~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~ 72 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLG-EMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 72 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCS-GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999876 42 2223333333333322 34556666663
No 306
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=35.96 E-value=1.3e+02 Score=23.71 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHhHhC-----CCCCCcccHHHHH---HHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 86 LLVESLTCFVRMIGS-----GVYPDHNVFPSVL---KSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~-----g~~p~~~t~~~ll---~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+.++|+-+|..+... -..|+.......+ ..+.+.-+ -+++..+.+.|+.|..++..-++..|++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888776543 2344432222221 22222222 25677777788888877777777777765444
Q ss_pred hhH--HHHH
Q 041894 158 DMH--IYDR 164 (219)
Q Consensus 158 ~~~--~~~~ 164 (219)
+.+ +|+.
T Consensus 240 ~~~lrlwD~ 248 (331)
T 3qye_A 240 GFVARVFDM 248 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 443 4444
No 307
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.24 E-value=1e+02 Score=20.83 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=45.4
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccc-ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
.|.+.|++++..=. .+++.....+ ..-.|.++++.+.+.+...+..|--.-|+.+...|.+.
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 35677887776433 4566666666 67789999999988877777777777788999888773
No 308
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=34.56 E-value=1.1e+02 Score=21.11 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=47.8
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhccc-ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchh
Q 041894 95 VRMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 95 ~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
+.|.+.|++++..=. .++......+ ..-.|.++++.+.+.+...+..|----|+.+...|.+..
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 346678888776433 4566666666 677899999999988877777777777899999998743
No 309
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=34.24 E-value=69 Score=25.10 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=71.7
Q ss_pred CccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC--CC---ChhhHHHHHHHHHhcCCh
Q 041894 13 NPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT--PA---PPVAWKSIIRCCTQNGLL 87 (219)
Q Consensus 13 ~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~---~~~~~~~li~~~~~~g~~ 87 (219)
..-+.|+++.+..-...-++.. +-|...-..|+..+|-.|+++.|.+=++...+ |. -..+|-.+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 3457899999988887777765 55777888999999999999999887776542 20 12234444433
Q ss_pred hHHHHHHHHhHhCCCCCCc-----ccHHHHHHHHh--cccChhhHHHHHHHHHHh
Q 041894 88 VESLTCFVRMIGSGVYPDH-----NVFPSVLKSCT--LLVDFRFGESVHACIIRL 135 (219)
Q Consensus 88 ~~a~~~~~~m~~~g~~p~~-----~t~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 135 (219)
...=.+....+-.|.. .-...++.+.. ..|+.+.|..+-+.....
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2222233333333322 23455666654 348888888887776554
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.20 E-value=1.5e+02 Score=22.53 Aligned_cols=89 Identities=13% Similarity=-0.000 Sum_probs=55.2
Q ss_pred HHhCccccCChhHHHHHHHHHHHc--CCCCc----HHHHHHHHHHHhhcCCHHHHHHHHHhcC-CCCChhhHHHHHHHHH
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKT--LEPNS----RFLISRLLFIYNNFNLVHDSLCLLDTLK-TPAPPVAWKSIIRCCT 82 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~--g~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~li~~~~ 82 (219)
-|+.+....++++|..+.++..+. +.++. .......+..=.....-.-+..+.+++. .. +...-...++.+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~-~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSN-EIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Confidence 456777889999999999887653 33321 1122223333333333333444444443 33 5667778889999
Q ss_pred hcCChhHHHHHHHHhHh
Q 041894 83 QNGLLVESLTCFVRMIG 99 (219)
Q Consensus 83 ~~g~~~~a~~~~~~m~~ 99 (219)
+.|+.++|.++|-+.+.
T Consensus 103 rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHH
Confidence 99999999999987643
No 311
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=33.93 E-value=92 Score=21.27 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=36.5
Q ss_pred HHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 111 SVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 111 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
.+++.....+..-.|.++++.+.+.+...+..|----|+.+...|.+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 456666666677788999998888877777767666788888888774
No 312
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.79 E-value=37 Score=22.96 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=28.2
Q ss_pred HHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 93 CFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 93 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+|+.+....+.|+...--.-|..+...++++.|.+++-.+....
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~~ 91 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVDH 91 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHST
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCc
Confidence 44445555666665444444555667788888888888776643
No 313
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=33.40 E-value=44 Score=22.80 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=34.1
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChh
Q 041894 29 QIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 29 ~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~ 88 (219)
.+.+.|+.++..= ..++..+...+ .+-.|.++++.++ .. +..|----|+.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDV-GLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHCCcEE
Confidence 4667787766553 34455555555 5677888888774 22 3444444556667777554
No 314
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.21 E-value=1.5e+02 Score=22.05 Aligned_cols=69 Identities=13% Similarity=-0.024 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc-ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH-NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDL 141 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 141 (219)
..|-..++.+. .++..++..+|..|..+||--.. .-|...-..+...|++.+|.+++..=++++-.|-.
T Consensus 81 klWl~Ya~~~~-~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 81 KIWIWYINLFL-SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHhhc-ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 34444555441 34477899999999998876554 46677777778889999999999987777777754
No 315
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.01 E-value=96 Score=20.89 Aligned_cols=63 Identities=11% Similarity=-0.127 Sum_probs=37.2
Q ss_pred hHHHHHHhCccccCC---hhHH----HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC
Q 041894 5 KTLINLLKNPVSIKT---KSQA----KQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT 67 (219)
Q Consensus 5 ~~~~~ll~~~~~~~~---~~~a----~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 67 (219)
.++..++..|...-. .+++ ..+|+.+.+..+.|+...--.-|......++++.|..+.-.+..
T Consensus 20 ~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 20 RPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667776543321 2222 33666776666766655444445555667788888888776643
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.84 E-value=1.1e+02 Score=20.98 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=36.6
Q ss_pred hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
|.+.|++++..=. .+++.....+..-.|.++++.+.+.+...+..|----|+.+...|.+.
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 5566666664322 334444445556667777777766665555555555677777777654
No 317
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.28 E-value=1.4e+02 Score=21.29 Aligned_cols=113 Identities=12% Similarity=-0.001 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHH
Q 041894 36 PNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKS 115 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 115 (219)
.++..+-...+.++++.++.+....+...+..+ |..+-...+.++.+.|+.+ +...+.++.+ .|+..+=...+.+
T Consensus 61 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~a 135 (211)
T 3ltm_A 61 DEDAWVRRAAADALGQIGDERAVEPLIKALKDE-DGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFA 135 (211)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHH
Confidence 356666677777888888766666666777778 8888888889999888754 4455555554 3676677777888
Q ss_pred HhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 116 CTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 116 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.++.|..+....+...+ + .++..+-...+.++.+.|..
T Consensus 136 L~~~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 136 LGEIGDERAVEPLIKAL-K---DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCSH
T ss_pred HHHcCCHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCch
Confidence 88887765443333332 2 46666777778888888765
No 318
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=32.22 E-value=1.3e+02 Score=21.48 Aligned_cols=142 Identities=5% Similarity=-0.020 Sum_probs=79.7
Q ss_pred HHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc---ccHHHHHHHHh
Q 041894 45 LLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH---NVFPSVLKSCT 117 (219)
Q Consensus 45 ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~ 117 (219)
.|...++.|+++....++..-+ .+ |..-++.|..+ +..|+.+- ++.+.+.|..++. .-++.+ ...+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A-~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L-~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWA-CSAGHTEI----VEFLLQLGVPVNDKDDAGWSPL-HIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHH-HHHTCHHH----HHHHHHTTCCSCCCCTTSCCHH-HHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHH-HHcCcHHH----HHHHHHhCCCCCCcCCCCCCHH-HHHH
Confidence 4666778899999998887643 33 44444444444 44566654 4444556655543 333444 4444
Q ss_pred cccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC---CCee
Q 041894 118 LLVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER---NGNV 192 (219)
Q Consensus 118 ~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~ 192 (219)
..|..+ +++.+.+.|..++... ..+.+...++.|+. +-+.-+++.-... + ..
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~------------------~~~~~Ll~~g~~~~~~~-~~ 138 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRH------------------EIAVMLLEGGANPDAKD-HY 138 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH------------------HHHHHHHHTTCCTTCCC-TT
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH------------------HHHHHHHHcCCCCCCcC-CC
Confidence 556664 4555566776654321 22345555666777 8888887754332 2 23
Q ss_pred ehhHHHHHHhhhh-----HhHHHcCCCCCC
Q 041894 193 ELSSGLAGCNKFE-----KRVVSAGHDADL 217 (219)
Q Consensus 193 ~~n~ll~~~~~~~-----~~m~~~g~~pd~ 217 (219)
.++.+..+. +.| +.+.+.|..++.
T Consensus 139 g~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~ 167 (231)
T 3aji_A 139 DATAMHRAA-AKGNLKMVHILLFYKASTNI 167 (231)
T ss_dssp SCCHHHHHH-HHTCHHHHHHHHHTTCCSCC
T ss_pred CCcHHHHHH-HcCCHHHHHHHHhcCCCccc
Confidence 344444443 333 356667776654
No 319
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=31.93 E-value=64 Score=22.37 Aligned_cols=69 Identities=4% Similarity=-0.110 Sum_probs=38.4
Q ss_pred CCcHHHHHHHHHHHhhcC---CHHHHHHHHHhcC--CCCC-hhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc
Q 041894 36 PNSRFLISRLLFIYNNFN---LVHDSLCLLDTLK--TPAP-PVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH 106 (219)
Q Consensus 36 ~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~m~--~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 106 (219)
.|+..+-=.+--++.++. +...+..++.++- .|.. ...+=-|--|+.+.|++++|.++.+.+++ ++|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 444444333333444444 3456677766653 2201 12233344677788889888888888776 36764
No 320
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=31.47 E-value=87 Score=18.84 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=46.2
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccc-ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLV-DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
.|.+.|+.++..- ..++......+ ..-.+.++++.+.+.+...+..|-...|+.+...|.+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4667788777644 45667777665 5667889999998887667777888888999988877
No 321
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.35 E-value=46 Score=23.85 Aligned_cols=82 Identities=7% Similarity=-0.061 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccC--hhhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 041894 73 AWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVD--FRFGESVHACIIRLGVDLDLYTNNALMNM 150 (219)
Q Consensus 73 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 150 (219)
....+|+-|...|+.++|...++++......| .....+|......++ -+.+-.++..+.. ++-+.......+...
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~--~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~l 88 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKL 88 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG--HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46789999999999999999999976322111 111222232222222 2334455666633 554444454444444
Q ss_pred HHhcCCc
Q 041894 151 YAQSQNM 157 (219)
Q Consensus 151 y~~~g~~ 157 (219)
+....++
T Consensus 89 le~ldDl 95 (165)
T 2rg8_A 89 LKDLPEL 95 (165)
T ss_dssp HHHHHHH
T ss_pred HHhChhh
Confidence 4444333
No 322
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=31.27 E-value=1.6e+02 Score=21.80 Aligned_cols=133 Identities=9% Similarity=-0.008 Sum_probs=63.7
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g 85 (219)
|...++.|+.+....+ .+.|..++... -.+.+..-++.|+.+-+..+++.=. .+ |..-++.+..+. ..|
T Consensus 7 L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~-~~~ 80 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNL----ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV-TADWHTPLFNAC-VSG 80 (261)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-CTTSCCHHHHHH-HHT
T ss_pred HHHHHHcCCHHHHHHH----HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCCHHHHHH-HcC
Confidence 3444556666654444 45565443221 1233444556688877777766422 22 333334444443 346
Q ss_pred ChhHHHHHHHHhHhCCCCCCccc-HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCc
Q 041894 86 LLVESLTCFVRMIGSGVYPDHNV-FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQSQNM 157 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~g~~ 157 (219)
+.+- .+.+.+.|..++... -.+.+...+..|..+ +.+.+.+.|..++... ..+.+..-++.|+.
T Consensus 81 ~~~~----v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 147 (261)
T 2xai_A 81 SWDC----VNLLLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLACENQQR 147 (261)
T ss_dssp CHHH----HHHHHHTTCCSSCSCTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCH
T ss_pred CHHH----HHHHHHCCCCCCCCCCCCCHHHHHHHcCcHH----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCH
Confidence 6553 334445554443221 223344444556654 4455556666554221 11334455566666
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.27 E-value=1.1e+02 Score=20.61 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=32.8
Q ss_pred HHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 112 VLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 112 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
+++.....+..-.|.++++.+.+.+...+..|--.-|+.+...|.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4555555566677888888887777666666666668888888876
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=31.21 E-value=45 Score=23.28 Aligned_cols=63 Identities=10% Similarity=0.048 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhH
Q 041894 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
.+-+.+.+.|+.++.. =..++..+...+.+-.|.++++.++ .. +..|-=-.|+.+...|-+.+
T Consensus 13 ~~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~ 79 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNT-SISSVYRILNFLEKENFISV 79 (150)
T ss_dssp HHHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCcEEE
Confidence 3455677888876554 3455666666677788899998884 23 44444445677788886543
No 325
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=31.07 E-value=83 Score=25.10 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=18.5
Q ss_pred HhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 98 IGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 98 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
.+.|+.|..+.+.=++..+++.=.++.+.++|+.+...|
T Consensus 220 ~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 220 KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 344445544444444444444444455555555544444
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=30.30 E-value=1.3e+02 Score=20.73 Aligned_cols=61 Identities=8% Similarity=0.069 Sum_probs=43.1
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
.+.+.|++++..= ..+++.....+ .-.|.++++.+.+.+...+..|--.-|+.+...|.+.
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 4566788877642 23445555555 6789999999988877767666666688888888774
No 327
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=30.09 E-value=1.3e+02 Score=20.44 Aligned_cols=82 Identities=9% Similarity=-0.031 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHH---HHHHHHhcCCCCC-h---hhH-HHHHHHHHhcCChhHHH
Q 041894 20 KSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHD---SLCLLDTLKTPAP-P---VAW-KSIIRCCTQNGLLVESL 91 (219)
Q Consensus 20 ~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~m~~~~~-~---~~~-~~li~~~~~~g~~~~a~ 91 (219)
+..+++-|......|. |+..+--.+--++.++.+... ++.++.++-.. + . .-| =.|--++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444554444443 444444444445555555444 66666665433 2 1 111 12334566667777777
Q ss_pred HHHHHhHhCCCCCC
Q 041894 92 TCFVRMIGSGVYPD 105 (219)
Q Consensus 92 ~~~~~m~~~g~~p~ 105 (219)
++++.+++. +|+
T Consensus 95 ~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 95 KYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHHh--CCC
Confidence 777666653 454
No 328
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=29.94 E-value=1.4e+02 Score=21.85 Aligned_cols=55 Identities=4% Similarity=-0.261 Sum_probs=35.0
Q ss_pred HHHHHhcCChhHHHHHHHHhHhCCCCCCcc-------cHHHHHHHHh--cccChhhHHHHHHHH
Q 041894 78 IRCCTQNGLLVESLTCFVRMIGSGVYPDHN-------VFPSVLKSCT--LLVDFRFGESVHACI 132 (219)
Q Consensus 78 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~g~~~~a~~~~~~m 132 (219)
|...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|..+..+.+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 334455688888877887777777666643 3355555542 567887777766654
No 329
>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A
Probab=29.92 E-value=1.7e+02 Score=21.63 Aligned_cols=93 Identities=8% Similarity=0.003 Sum_probs=57.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHH-----------HHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCC
Q 041894 70 PPVAWKSIIRCCTQNGLLVESLTCF-----------VRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVD 138 (219)
Q Consensus 70 ~~~~~~~li~~~~~~g~~~~a~~~~-----------~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 138 (219)
....|...+...+..|++.++...+ +.+.+.+-.+....|...|+.|+.-.-.+.+..+.+.+.+.+-.
T Consensus 112 ~~~aY~~~l~~~a~~~~~~~~~aAl~pc~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~~~~f~~~v~~~~~~ld~~~~~ 191 (221)
T 3ibx_A 112 ANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLA 191 (221)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHTHHHHHHHHHHHHHHTCSSSTTTCTTTHHHHHHTTSHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 5577888887777778777654322 22222221123567899999998543334445555556666555
Q ss_pred ccHHHHHHHHHHHHhcCCchhHHH
Q 041894 139 LDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 139 ~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
.+......+.+.|.+.=++|...|
T Consensus 192 ~~~~~~~~~~~~F~~a~~lE~~Fw 215 (221)
T 3ibx_A 192 SSKQEIEKLKEIFITTSEYEYLFW 215 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888877766643333
No 330
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=29.91 E-value=82 Score=21.80 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCC
Q 041894 121 DFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIP 186 (219)
Q Consensus 121 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~ 186 (219)
+...+..+++.+.+.+........--|--++.|.|++ ++|+++.+.+.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY------------------~~Ar~y~d~lL 105 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY------------------SMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH------------------HHHHHHHHHHH
Confidence 4556677777776665222233333445567777777 77777777655
No 331
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=29.89 E-value=1.8e+02 Score=22.05 Aligned_cols=93 Identities=8% Similarity=-0.016 Sum_probs=59.0
Q ss_pred ChhhHHHHHHHHHhc-CChhHHHHH-----------HHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 70 PPVAWKSIIRCCTQN-GLLVESLTC-----------FVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 70 ~~~~~~~li~~~~~~-g~~~~a~~~-----------~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
....|+..+...+.. |++.++... -+.+.+.+-.+....|...|+.|+ -.-.+.+..+.+.+.+.+-
T Consensus 128 ~~~aYt~~ll~~a~~~g~~~~~laAl~PC~w~Y~eig~~l~~~~~~~~~~~Y~~WI~~Y~-~ef~~~v~~~~~~ld~~~~ 206 (248)
T 3no6_A 128 SGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYS-TEMDELVDVFDQLMDRLTK 206 (248)
T ss_dssp HHHHHHHHHHHHHHHCSSTHHHHHHHTHHHHHHHHHHHHHHHCTTCCTTSTTHHHHHHHH-HHTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence 456788888777777 777665332 223333432223467899999999 5444444555666666665
Q ss_pred CccHHHHHHHHHHHHhcCCchhHHHH
Q 041894 138 DLDLYTNNALMNMYAQSQNMDMHIYD 163 (219)
Q Consensus 138 ~~~~~~~~~ll~~y~~~g~~~~~~~~ 163 (219)
..+......+...|.+.=++|...|+
T Consensus 207 ~~s~~~~~~l~~~F~~a~~lE~~Fwd 232 (248)
T 3no6_A 207 HCSETEKKEIKENFLQSTIHERHFFN 232 (248)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888887777544443
No 332
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.81 E-value=1.5e+02 Score=21.19 Aligned_cols=132 Identities=9% Similarity=0.035 Sum_probs=63.8
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHH--HHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhcC
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFL--ISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQNG 85 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~g 85 (219)
|...++.|+.+. +..+.+.|..++... -.+.+...++.|+.+-+..+++.=. .+ +..-.+.+. ..+..|
T Consensus 15 L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~-~A~~~~ 88 (237)
T 3b7b_A 15 LHAAAEAGHVDI----CHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLH-LAAKKG 88 (237)
T ss_dssp HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCC-CTTSCCHHH-HHHHTT
T ss_pred HHHHHHcCcHHH----HHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCC-CCCCCcHHH-HHHHcC
Confidence 444456677654 444556665543321 1234555566788887777765422 22 333333333 334456
Q ss_pred ChhHHHHHHHHhHhCC-CCCC---cccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH--HHHHHHHHHHhcCCc
Q 041894 86 LLVESLTCFVRMIGSG-VYPD---HNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY--TNNALMNMYAQSQNM 157 (219)
Q Consensus 86 ~~~~a~~~~~~m~~~g-~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~y~~~g~~ 157 (219)
+.+- ++.+.+.| ..++ ..-.+.+ ...+..|..+ +++.+.+.|..++.. ...+.+..-++.|+.
T Consensus 89 ~~~~----~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 89 HYEV----VQYLLSNGQMDVNCQDDGGWTPM-IWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp CHHH----HHHHHTTTCCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred CHHH----HHHHHhCCCCCcccCCCCCCCHH-HHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 6553 33444444 3332 2233333 3444556654 445555666655432 122334445566666
No 333
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.63 E-value=52 Score=22.92 Aligned_cols=61 Identities=7% Similarity=-0.048 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcC-CHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhH
Q 041894 27 HAQIFKTLEPNSRFLISRLLFIYNNFN-LVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 27 ~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~ 89 (219)
.+.|.+.|+.++..= ..++..+...+ .+-.|.++++.+. .. +..|---.|+.+...|-+.+
T Consensus 5 ~~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 5 NQALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEI-GLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHCCcEEE
Confidence 345677887776653 34455555555 6677888888874 22 34444445667777776543
No 334
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=29.39 E-value=1.3e+02 Score=20.44 Aligned_cols=134 Identities=10% Similarity=0.012 Sum_probs=65.5
Q ss_pred HHhCccccCChhHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhhcCCHHHHHHHHHhcC---CCCChhhHHHHHHHHHhc
Q 041894 10 LLKNPVSIKTKSQAKQLHAQIFKTLEPNSRF--LISRLLFIYNNFNLVHDSLCLLDTLK---TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 10 ll~~~~~~~~~~~a~~l~~~m~~~g~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~~li~~~~~~ 84 (219)
.+.-.++.|+.+....++ +.|..++.. .-.+.|..-++.|+.+-+..+++.=. .. |..-++.|.. .+..
T Consensus 17 ~l~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~-A~~~ 90 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRILM----ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-DHAGMTPLRL-AALF 90 (169)
T ss_dssp HHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC-CTTSCCHHHH-HHHT
T ss_pred hHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCCCHHHH-HHHc
Confidence 344445677777655554 456443321 12344555667788887777776422 22 3233333433 3445
Q ss_pred CChhHHHHHHHHhHhCCCCCCccc--HHHHHHHHhcccChhhHHHHHHHHHHhCCCccHH--HHHHHHHHHHhcCCc
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNV--FPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLY--TNNALMNMYAQSQNM 157 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~y~~~g~~ 157 (219)
|+.+- .+.+.+.|..++... -.+.+...++.|..+ +.+.+.+.|..++.. ...+.+..-++.|+.
T Consensus 91 ~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 159 (169)
T 2y1l_E 91 GHLEI----VEVLLKNGADVNANDMEGHTPLHLAAMFGHLE----IVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159 (169)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 66553 334445565554321 123344444556654 444555666655322 112233444555555
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.04 E-value=51 Score=23.39 Aligned_cols=64 Identities=6% Similarity=-0.069 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCC----CC-ChhhHHHHHHHHHhcCChhH
Q 041894 25 QLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKT----PA-PPVAWKSIIRCCTQNGLLVE 89 (219)
Q Consensus 25 ~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~----~~-~~~~~~~li~~~~~~g~~~~ 89 (219)
.+-+.+.+.|+.++.. -..++..+...+.+-.|.++++.+.+ |. +..|-=--|+.+...|-+.+
T Consensus 19 ~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 19 RFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3445667789887665 45667777777788889999987742 20 33343334577788886554
No 336
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=28.39 E-value=1.4e+02 Score=20.10 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCc---ccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHH--HHHH
Q 041894 74 WKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDH---NVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTN--NALM 148 (219)
Q Consensus 74 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~--~~ll 148 (219)
.+.|..+ ++.|+.+....+++. .+..++. .-++. +...+..|.. ++++.+.+.|..++.... .+.+
T Consensus 9 ~~~l~~A-~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L 79 (165)
T 3twr_A 9 DRQLLEA-AKAGDVETVKKLCTV---QSVNCRDIEGRQSTP-LHFAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPL 79 (165)
T ss_dssp HHHHHHH-HHHTCHHHHHHHCCT---TTTTCCCTTTTCCCH-HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred hHHHHHH-HHhCCHHHHHHHHHc---CCCCccccccCCCCH-HHHHHHcChH----HHHHHHHhcCCCCCccCCCCCCHH
Confidence 3444444 556887766555432 2333222 22344 4444556776 455555666766543322 2345
Q ss_pred HHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCC---CCeeehhHHHHHHhhhh----HhHHHcCCCCCC
Q 041894 149 NMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPER---NGNVELSSGLAGCNKFE----KRVVSAGHDADL 217 (219)
Q Consensus 149 ~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~---~~~~~~n~ll~~~~~~~----~~m~~~g~~pd~ 217 (219)
..-++.|+. +-+.-+++.-... + ..-++.+..+..... +.+.+.|..|+.
T Consensus 80 ~~A~~~~~~------------------~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~ 136 (165)
T 3twr_A 80 HNACSYGHY------------------EVAELLVKHGAVVNVAD-LWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136 (165)
T ss_dssp HHHHHTTCH------------------HHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHcCcH------------------HHHHHHHhCCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence 555667777 7666666643322 2 233444444432221 345566666654
No 337
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.87 E-value=1.3e+02 Score=20.76 Aligned_cols=62 Identities=8% Similarity=0.036 Sum_probs=44.0
Q ss_pred HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCch
Q 041894 96 RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNMD 158 (219)
Q Consensus 96 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~~ 158 (219)
.+.+.|++++..=. .+++.....+..-.|.++++.+.+.+...+..|----|+.+...|.+.
T Consensus 17 ~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 17 SIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 46677877765332 445666666677889999999988877777777777789999988874
No 338
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.57 E-value=1.8e+02 Score=21.24 Aligned_cols=57 Identities=7% Similarity=-0.170 Sum_probs=34.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhHhCCCCCCc-------ccHHHHHHHHhc--ccChhhHHHHHHHHH
Q 041894 77 IIRCCTQNGLLVESLTCFVRMIGSGVYPDH-------NVFPSVLKSCTL--LVDFRFGESVHACII 133 (219)
Q Consensus 77 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~--~g~~~~a~~~~~~m~ 133 (219)
.+...++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|..+..+.+++.-.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 70 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDK 70 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCC
Confidence 344455678888777777777666665543 344455555432 277777776665533
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.22 E-value=1.6e+02 Score=20.64 Aligned_cols=72 Identities=14% Similarity=0.083 Sum_probs=51.6
Q ss_pred hhHHHHHHHH-hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHh--CCCccHHHHHHHHHHHHhcCCchh
Q 041894 87 LVESLTCFVR-MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRL--GVDLDLYTNNALMNMYAQSQNMDM 159 (219)
Q Consensus 87 ~~~a~~~~~~-m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~y~~~g~~~~ 159 (219)
.+.+.+-+.+ +.+.|++++..= ..+++.....+..-.|.++++.+.+. +...+..|--.-|+.+...|.+..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3555555555 456788887532 45677777777888999999999887 666666665566889999998743
No 340
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.19 E-value=51 Score=19.20 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHcC-CCCcHH
Q 041894 19 TKSQAKQLHAQIFKTL-EPNSRF 40 (219)
Q Consensus 19 ~~~~a~~l~~~m~~~g-~~~~~~ 40 (219)
+++.|...|..+...| ++|+.+
T Consensus 35 d~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 35 DYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp CHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CHHHHHHHHHHHHHcCCCCHHHh
Confidence 7899999999998766 666543
No 341
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.08 E-value=1.9e+02 Score=22.24 Aligned_cols=120 Identities=9% Similarity=-0.007 Sum_probs=0.0
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHH--HHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhc
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLIS--RLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQN 84 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~ 84 (219)
+...+..+.......+...+.+.|..++..... +.|...++.|+.+.+..++..-. .+ |..=++.|.-|....
T Consensus 206 l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~-d~~G~TpL~~A~~~g 284 (337)
T 4g8k_A 206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDT-DSDGKTALLLAVELK 284 (337)
T ss_dssp HHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCB-CTTSCBHHHHHHHTT
T ss_pred HHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCc-CCCCCCHHHHHHHcC
Q ss_pred CChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHH
Q 041894 85 GLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYT 143 (219)
Q Consensus 85 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 143 (219)
. .++.+-+++.|..||..+ .+...++.|.. ++.+.+.+.|-.||...
T Consensus 285 ~-----~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~----~iv~~Ll~~GA~~d~~~ 331 (337)
T 4g8k_A 285 L-----KKIAELLCKRGASTDCGD---LVMTARRNYDH----SLVKVLLSHGAKEDFHP 331 (337)
T ss_dssp C-----HHHHHHHHTTSCSSTTCC---HHHHHHHTTCH----HHHHHHHHTTCCC----
T ss_pred C-----HHHHHHHHHCCCCCCCCC---HHHHHHHcCCH----HHHHHHHHCcCCCCCCC
No 342
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=27.00 E-value=1.8e+02 Score=23.63 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCC----cccHHHHHHHHhcccC-hhhHHHHHHHHHHhCCCccHHHHHH
Q 041894 72 VAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPD----HNVFPSVLKSCTLLVD-FRFGESVHACIIRLGVDLDLYTNNA 146 (219)
Q Consensus 72 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ 146 (219)
..-.++|.-|...|+.++|.+.++++. .|+ ...+..+..++-+... .+.+-.++..+.+.++-+.......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~G 88 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMR----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQA 88 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 346789999999999999999999984 253 2344445555544432 2344466777777777666556666
Q ss_pred HHHHHHhcCCc
Q 041894 147 LMNMYAQSQNM 157 (219)
Q Consensus 147 ll~~y~~~g~~ 157 (219)
+...+-...+.
T Consensus 89 f~~lle~l~Dl 99 (364)
T 3l6a_A 89 FLNVLDQCPKL 99 (364)
T ss_dssp HHHHHHTHHHH
T ss_pred HHHHHhhChHh
Confidence 66555554444
No 343
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=27.00 E-value=2.2e+02 Score=22.05 Aligned_cols=26 Identities=0% Similarity=-0.111 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhcCC
Q 041894 42 ISRLLFIYNNFNLVHDSLCLLDTLKT 67 (219)
Q Consensus 42 ~~~ll~~~~~~g~~~~A~~~~~~m~~ 67 (219)
-|.|+.-|..+|+++.|.++|..++.
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~ 62 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQ 62 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCCh
Confidence 48899999999999999999998874
No 344
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.96 E-value=1.2e+02 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=12.2
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCC
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
+...+..|..+.+..+++.+.+.|-
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC
Confidence 3333444555555555555555543
No 345
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=25.46 E-value=1e+02 Score=17.66 Aligned_cols=40 Identities=8% Similarity=0.080 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCC--HHHHHHHHHhcCCC
Q 041894 24 KQLHAQIFKTLEPNSRFLISRLLFIYNNFNL--VHDSLCLLDTLKTP 68 (219)
Q Consensus 24 ~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~A~~~~~~m~~~ 68 (219)
.+.++.+.+-||.+.. ...+..+.|. ++.|.+.+..|..|
T Consensus 10 ~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~~~~ 51 (54)
T 2cos_A 10 RQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKMSGP 51 (54)
T ss_dssp HHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 4557888888888753 3345555555 99999999988766
No 346
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.20 E-value=1.7e+02 Score=20.03 Aligned_cols=68 Identities=7% Similarity=-0.071 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcccHHHHHHHHhcccChh
Q 041894 55 VHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHNVFPSVLKSCTLLVDFR 123 (219)
Q Consensus 55 ~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 123 (219)
.+.+.+.+.+-.-+ -+..=-.++..+...+.+-.|.++++.+.+.+-..+..|.--.|+.+...|.+.
T Consensus 6 ~~~~~~~l~~~g~r-~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 6 LKEALETLKETGVR-ITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 44455555544333 445556677777777777888889888877764445555444556665555543
No 347
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.52 E-value=1.9e+02 Score=22.09 Aligned_cols=103 Identities=8% Similarity=0.046 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcC----CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCCCCCcc---cHHHHHHHH
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLK----TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGVYPDHN---VFPSVLKSC 116 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~ 116 (219)
.-|...++.|+.+....++.... .+ |..-++. +...+..|+.+-+ +.+.+.|..++.. -++.| ...
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L-~~A 98 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTP-LHLAAGYNRVRIV----QLLLQHGADVHAKDKGGLVPL-HNA 98 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHH-HHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCH-HHHHHHcCCHHHH----HHHHHcCCCCCccCCCCCcHH-HHH
Confidence 34455567788888777776532 12 2222333 3334455665533 3444455554432 23333 333
Q ss_pred hcccChhhHHHHHHHHHHhCCCccHHH--HHHHHHHHHhcCCc
Q 041894 117 TLLVDFRFGESVHACIIRLGVDLDLYT--NNALMNMYAQSQNM 157 (219)
Q Consensus 117 ~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~y~~~g~~ 157 (219)
+..|..+ +.+.+.+.|..++... ..+.+..-++.|+.
T Consensus 99 ~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 137 (351)
T 3utm_A 99 CSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRV 137 (351)
T ss_dssp HHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 4456654 4444555665554321 11234444556666
No 348
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=23.55 E-value=1.9e+02 Score=20.14 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCchhHHHHHhhhhccCCcchhhHHHHhhcCCCCCCeeehhHHHHHHhhhhHhHHHcC
Q 041894 143 TNNALMNMYAQSQNMDMHIYDRFQGFGFNGGREASVHEVLDKIPERNGNVELSSGLAGCNKFEKRVVSAG 212 (219)
Q Consensus 143 ~~~~ll~~y~~~g~~~~~~~~~~~~~~~~~g~~~~a~~l~~~m~~~~~~~~~n~ll~~~~~~~~~m~~~g 212 (219)
....-|..+++.|+. +.+.+.+..++..- ..-...|..|.+..+....+|
T Consensus 95 ~~c~~lE~~~~~~~~------------------~~~~~~l~~l~~e~--~~v~~~L~~~~~le~q~~~~~ 144 (153)
T 3us6_A 95 NSCVAFRNFCEEQNI------------------DACRRCLQQVKQEY--LLVKNKLETLLRLEQQIVAAG 144 (153)
T ss_dssp HHHHHHHHHHHHTCH------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCH------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcC
Confidence 344446667777777 77777777765432 122234555666666555555
No 349
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=23.50 E-value=1.3e+02 Score=22.92 Aligned_cols=81 Identities=10% Similarity=0.160 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcC---------ChhHHHHHHHHhHhCCCC-CCcccHHHHHH
Q 041894 55 VHDSLCLLDTLKTPA----------PPVAWKSIIRCCTQNG---------LLVESLTCFVRMIGSGVY-PDHNVFPSVLK 114 (219)
Q Consensus 55 ~~~A~~~~~~m~~~~----------~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~ 114 (219)
.+.|..++.+|..+. -..-|.++-.+|.+.| +++--.++++.-++.|++ -=...|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 689999999996320 3467999999999988 445555666666777764 23468888887
Q ss_pred HHhcccChhhHHHHHHHHHHh
Q 041894 115 SCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~ 135 (219)
--.-.-+.++..+++..+++.
T Consensus 227 k~TG~TrpedV~~ll~~~K~l 247 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQL 247 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 777677889999999887653
No 350
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.33 E-value=1.9e+02 Score=20.01 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHH
Q 041894 51 NFNLVHDSLCLLD 63 (219)
Q Consensus 51 ~~g~~~~A~~~~~ 63 (219)
+.|+.+-+..+++
T Consensus 48 ~~~~~~~v~~Ll~ 60 (201)
T 3hra_A 48 HNNDIEIAKALID 60 (201)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3444444444433
No 351
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=23.24 E-value=1.4e+02 Score=23.13 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCC----------ChhhHHHHHHHHHhcC---------ChhHHHHHHHHhHhCCCCC-CcccHHHHHH
Q 041894 55 VHDSLCLLDTLKTPA----------PPVAWKSIIRCCTQNG---------LLVESLTCFVRMIGSGVYP-DHNVFPSVLK 114 (219)
Q Consensus 55 ~~~A~~~~~~m~~~~----------~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~ 114 (219)
.+.|..++.+|..+. -..-|.++-.+|.+.| +++--.++++.-++.|++- =...|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 688999999986320 3467999999999987 4555666777777787652 4568888887
Q ss_pred HHhcccChhhHHHHHHHHHHh
Q 041894 115 SCTLLVDFRFGESVHACIIRL 135 (219)
Q Consensus 115 ~~~~~g~~~~a~~~~~~m~~~ 135 (219)
-=.-.-+.++..+++..+++.
T Consensus 250 k~TG~TrpedV~~ll~~~K~l 270 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKKL 270 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 777677889999999887653
No 352
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=23.23 E-value=51 Score=22.83 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCC---ChhhHHHHHHHHHhcCChh
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPA---PPVAWKSIIRCCTQNGLLV 88 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~li~~~~~~g~~~ 88 (219)
+-+.+.+.|+.++..= ..++..+...+ +-.|.++++.+++.. +..|-=--|+.+...|-+.
T Consensus 6 ~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 3445677787776652 33444444555 567888888875320 3333333456667777544
No 353
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=22.66 E-value=2.4e+02 Score=20.92 Aligned_cols=92 Identities=3% Similarity=-0.029 Sum_probs=56.5
Q ss_pred ChhhHHHHHHHHHhc-CChhHHHHH-------HH----HhHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhCC
Q 041894 70 PPVAWKSIIRCCTQN-GLLVESLTC-------FV----RMIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGV 137 (219)
Q Consensus 70 ~~~~~~~li~~~~~~-g~~~~a~~~-------~~----~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 137 (219)
....|...+...+.. |++.++... |. .+.+.+-.+....|..-|+.|+ -.-.+.+..+.+.+.+.+-
T Consensus 109 ~~~aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~-~~f~~~v~~~~~~ld~~~~ 187 (229)
T 4fn6_A 109 SGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYS-TEMDDIINVFESLMNKLAE 187 (229)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCTTCCTTSTHHHHHHHHT-TTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHh-HHHHHHHHHHHHHHHHHHh
Confidence 567788888777777 877665332 22 2333332213468899999999 4444444445555555554
Q ss_pred CccHHHHHHHHHHHHhcCCchhHHH
Q 041894 138 DLDLYTNNALMNMYAQSQNMDMHIY 162 (219)
Q Consensus 138 ~~~~~~~~~ll~~y~~~g~~~~~~~ 162 (219)
..+......+...|.+.=+++...|
T Consensus 188 ~~~~~~~~~~~~~F~~a~~lE~~Fw 212 (229)
T 4fn6_A 188 SMSDKELEQVKQVFLESCIHERRFF 212 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888777744433
No 354
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=22.52 E-value=1.4e+02 Score=19.05 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=41.9
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 26 LHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLCLLDTLKTPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 26 l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
+++.+.+.|+- +..-+..+-. ..-..++|..+++.++.+ +..+|..++.++.. .....+.+..-...+
T Consensus 26 lld~L~~~~VL-t~~~~e~I~~---~~t~~~k~~~Lld~L~~r-G~~Af~~F~~aL~~---~~~La~~L~~~~~~~ 93 (100)
T 3crd_A 26 VLQYLYQEGIL-TENHIQEINA---QTTGLRKTMLLLDILPSR-GPKAFDTFLDSLQE---FPWVREKLKKAREEA 93 (100)
T ss_dssp SHHHHHHHTSS-CHHHHHHHTT---CSSSHHHHHHHHHHTTTS-CSSCHHHHHHHCTT---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCC-CHHHHHHHHc---CCCHHHHHHHHHHHHHHH-CHHHHHHHHHHHHh---CHHHHHHHHhhcccc
Confidence 34445555533 2333333322 356678999999999888 88999999999864 444444454444333
No 355
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.95 E-value=1.6e+02 Score=20.08 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=21.9
Q ss_pred HhCccccCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 041894 11 LKNPVSIKTKSQAKQLHAQIFKTLEPNSRFLISRLLFIYNNFNLVHDSLC 60 (219)
Q Consensus 11 l~~~~~~~~~~~a~~l~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~ 60 (219)
|...+.+++.+-|+.+++..++.| +...|.++|..|...=+++-+.+
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 333444555555555555544444 34444444444444444444433
No 356
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=20.54 E-value=3.4e+02 Score=21.86 Aligned_cols=106 Identities=9% Similarity=-0.030 Sum_probs=56.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhcC------CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCCC-----CCCcccHHHH
Q 041894 44 RLLFIYNNFNLVHDSLCLLDTLK------TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSGV-----YPDHNVFPSV 112 (219)
Q Consensus 44 ~ll~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~t~~~l 112 (219)
+.+..-++.|+.+-+..+++.-. .. |..-.+.|..+ +..|+.+-+. .+.+.|- .++...++.+
T Consensus 94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~-~~~~~tpL~~A-a~~G~~eiv~----~Ll~~gad~~~~~i~~~~~TpL 167 (376)
T 2aja_A 94 VICFVAAITGCSSALDTLCLLLTSDEIVKVI-QAENYQAFRLA-AENGHLHVLN----RLCELAPTEIMAMIQAENYHAF 167 (376)
T ss_dssp HHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHH-HHTTCHHHHH----HHHHSCTTTHHHHHSHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHh-ccCCCCHHHHH-HHcCCHHHHH----HHHhCCCCccccccCCCCCCHH
Confidence 45556677898888888776532 22 34445555544 4567766443 3344552 2222234444
Q ss_pred HHHHhcccChhhHHHHHHHHHHhCCC-----ccHHHHHHHHHHHHhcCCchhH
Q 041894 113 LKSCTLLVDFRFGESVHACIIRLGVD-----LDLYTNNALMNMYAQSQNMDMH 160 (219)
Q Consensus 113 l~~~~~~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~ll~~y~~~g~~~~~ 160 (219)
. .-+..|..+ +.+.+.+.|.. .|..-.+.|..+-++.|+.+-+
T Consensus 168 h-~Aa~~G~~e----iv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv 215 (376)
T 2aja_A 168 R-LAAENGHLH----VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 215 (376)
T ss_dssp H-HHHHTTCHH----HHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred H-HHHHCCCHH----HHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHH
Confidence 4 445567775 44445566755 3333455554444377877544
No 357
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=20.42 E-value=1.4e+02 Score=23.28 Aligned_cols=40 Identities=8% Similarity=-0.086 Sum_probs=19.4
Q ss_pred hHhCCCCCCcccHHHHHHHHhcccChhhHHHHHHHHHHhC
Q 041894 97 MIGSGVYPDHNVFPSVLKSCTLLVDFRFGESVHACIIRLG 136 (219)
Q Consensus 97 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g 136 (219)
+.+.|+.|...++.=++..+++.=.++...++|+.....|
T Consensus 180 L~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 180 FSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Confidence 3334455554444444444444444555555555544444
No 358
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.36 E-value=43 Score=25.78 Aligned_cols=53 Identities=15% Similarity=0.033 Sum_probs=37.2
Q ss_pred CCcccHHHHHHHHhcccChhhHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCc
Q 041894 104 PDHNVFPSVLKSCTLLVDFRFGESVHACIIRLGVDLDLYTNNALMNMYAQSQNM 157 (219)
Q Consensus 104 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~y~~~g~~ 157 (219)
|.......+..+ ...|+-+.+...+++....|..|.......++.+.-+-|+.
T Consensus 35 p~~~~~~~l~~a-l~~gd~~~~~~~~~~al~~g~~~~~i~~~~l~p~l~~vG~~ 87 (258)
T 2i2x_B 35 PKDELIYPIAKA-IFEGEEDDVVEGLQAAIEAGKDPIDLIDDALMVGMGVVIRL 87 (258)
T ss_dssp CCCTTSHHHHHH-HHTTCHHHHHHHHHHHHHHSCCTTTHHHHTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 333344444444 34588888999999998888888777777788777766654
No 359
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=20.34 E-value=2.8e+02 Score=20.83 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=6.7
Q ss_pred cchhhHHHHhhc
Q 041894 173 GREASVHEVLDK 184 (219)
Q Consensus 173 g~~~~a~~l~~~ 184 (219)
|..+-+.-+++.
T Consensus 201 ~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 201 QQRACVKKLLES 212 (285)
T ss_dssp TCHHHHHHHHHT
T ss_pred CcHHHHHHHHHC
Confidence 333666666654
No 360
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=20.13 E-value=2.3e+02 Score=19.79 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCCC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 041894 55 VHDSLCLLDTLKTPA-PPVAWKSIIRCCTQNGLLVESLTCFV 95 (219)
Q Consensus 55 ~~~A~~~~~~m~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 95 (219)
.+++..++..+...+ ..+.|.-++..+.+...+.+|++.|+
T Consensus 45 ~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD 86 (174)
T 2i7a_A 45 LDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ 86 (174)
T ss_dssp HHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666654221 34556555555554445666666664
No 361
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=20.02 E-value=2.2e+02 Score=19.41 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=34.9
Q ss_pred HHhhcCCHHHHHHHHHhc----C-CCCChhhHHHHHHHHHhcCChhHHHHHHHHhHhCC
Q 041894 48 IYNNFNLVHDSLCLLDTL----K-TPAPPVAWKSIIRCCTQNGLLVESLTCFVRMIGSG 101 (219)
Q Consensus 48 ~~~~~g~~~~A~~~~~~m----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 101 (219)
.|+..++++...+++..+ . .| .+.--.++++.|++ ++.+|.+.++...++|
T Consensus 49 lyf~~~n~~~m~~~L~pLh~~l~~~P-eT~~E~sF~~~fG~--~L~~A~~~~~~y~~t~ 104 (126)
T 2npu_A 49 LYFGERNVKGMFEVLEPLHAMMERGP-QTLKETSFNQAYGR--DLMEAQEWCRKYMKSG 104 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHH--HHHHHHHHHHHHHHTC
T ss_pred HHhcccCHHHHHHHHHHHHHHHccCC-CCHHHHHHHHHHhH--HHHHHHHHHHHHHHhC
Confidence 456677777777776544 3 46 66667777777776 4788887777766554
Done!