BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041895
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6
PE=1 SV=2
Length = 398
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 93 AKDALANAIAKNDSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEAT 152
A A + A + + + VV T + + ++ + E ECAICL +FE D+E
Sbjct: 84 AGGARSRATVNAAARGLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFE--DDETL 141
Query: 153 SLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
L C ++H CI WL + +CPVCR N A
Sbjct: 142 RLLPKCDHVFHPHCIDAWLEA--HVTCPVCRANLA 174
>sp|Q04781|LTN1_YEAST E3 ubiquitin-protein ligase listerin OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RKR1 PE=1 SV=1
Length = 1562
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 135 EECAICLKKFENIDNEATSLNCP-CQFLYHHECIWRWLRELRNYSCPVCR 183
EECAIC +D + S CP C+ +H C+++W R N +CP+CR
Sbjct: 1506 EECAICYSILHAVDRKLPSKTCPTCKNKFHGACLYKWFRSSGNNTCPLCR 1555
>sp|Q8LGA5|ATL31_ARATH E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana GN=ATL31
PE=1 SV=2
Length = 368
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190
ECAICL +FE D+E L C ++H CI WL+ + +CPVCR N A T
Sbjct: 123 ECAICLNEFE--DDETLRLLPKCDHVFHPHCIGAWLQG--HVTCPVCRTNLAEQT 173
>sp|Q9C919|ATL19_ARATH Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana
GN=ATL19 PE=3 SV=1
Length = 178
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 121 NHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCP 180
NH +E+EE+ E ECAICL + + NE + C+ +YH CI WL+ + +CP
Sbjct: 116 NH--EEDEEKSLESRECAICLSGY--VVNEECRVFPVCRHIYHALCIDAWLKN--HLTCP 169
Query: 181 VCRKNF 186
CRK+
Sbjct: 170 TCRKDL 175
>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1
PE=2 SV=1
Length = 338
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCR 183
E +CA+C+ FE EA + PC+ LYH +C+ WL EL N SCPVCR
Sbjct: 220 EFNQCAVCMDDFEE-GTEAKQM--PCKHLYHKDCLLPWL-ELHN-SCPVCR 265
>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana
GN=At3g19950 PE=2 SV=1
Length = 328
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 19/95 (20%)
Query: 97 LANAIAKND--------SSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENID 148
L +A+ND +S I + T+K ++K E + CA+C+ +FE+
Sbjct: 174 LIQQLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQ------CAVCMDEFEDGS 227
Query: 149 NEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCR 183
+ PC+ ++H +C+ WL EL N SCPVCR
Sbjct: 228 DVK---QMPCKHVFHQDCLLPWL-ELHN-SCPVCR 257
>sp|Q9C7I1|ATL34_ARATH RING-H2 finger protein ATL34 OS=Arabidopsis thaliana GN=ATL34 PE=2
SV=1
Length = 327
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNF 186
ECAICL +FE D E L PC +H CI WL +CPVCR +
Sbjct: 127 ECAICLNEFE--DEETLRLMPPCSHAFHASCIDVWLSS--RSTCPVCRASL 173
>sp|Q9M0R5|ATL36_ARATH Putative RING-H2 finger protein ATL36 OS=Arabidopsis thaliana
GN=ATL36 PE=3 SV=1
Length = 345
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
ECAICL +FE D E PC +H CI WL +CPVCR N +
Sbjct: 122 ECAICLSEFE--DQETLRWMPPCSHTFHANCIDVWLSSWS--TCPVCRANLS 169
>sp|Q9SUS4|RHA1A_ARATH RING-H2 zinc finger protein RHA1a OS=Arabidopsis thaliana GN=RHA1A
PE=2 SV=1
Length = 159
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 123 VVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVC 182
VV+ + + E+ C +CL FE+ D++ L C ++HH C+ RW+ + CPVC
Sbjct: 72 VVRFSDLPTDPEDCCTVCLSDFES-DDKVRQLP-KCGHVFHHYCLDRWIVDYNKMKCPVC 129
Query: 183 RKNF 186
R F
Sbjct: 130 RHRF 133
>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2
SV=1
Length = 381
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 105 DSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHH 164
D S I+ V K VV EE++ + +EC++CL +F+ ++E + C ++H
Sbjct: 103 DESAIRAIPVFKFKK-RDVVAGEEDQSKNSQECSVCLNEFQ--EDEKLRIIPNCCHVFHI 159
Query: 165 ECIWRWLRELRNYSCPVCRKNFA 187
+CI WL+ N +CP+CR + +
Sbjct: 160 DCIDIWLQG--NANCPLCRTSVS 180
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 55 LMLSLFDLERDKGNYSFFKTEPVPYKLQLQMFKDISNFAKDALANAIAKNDSSTIQICVV 114
+ ++F+L + G+Y++ + + + + A N + V+
Sbjct: 331 MFSNIFNLSGNPGDYAWGA-------------RGLDDIISQLMEQAQGHNAPAPAPEDVI 377
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL 174
+K V K +E +EE EC IC++ F+ I+++ L PC+ +H CI WLR
Sbjct: 378 AKMK----VQKPPKELIDEEGECTICMEMFK-INDDVIQL--PCKHYFHENCIKPWLR-- 428
Query: 175 RNYSCPVCR 183
N +C +CR
Sbjct: 429 VNGTCAICR 437
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL 174
LT + + + + ++ +E + CAICL ++E+ D PC YH C+ WL +
Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRV---LPCAHAYHSRCVDPWLTQT 264
Query: 175 RNYSCPVCRKNFAHG 189
R +CP+C++ G
Sbjct: 265 RK-TCPICKQPVHRG 278
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 125 KEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRK 184
K+E EE + +E+C ICL E+ ++ PC L+H C+ +WL + CP+CR
Sbjct: 283 KDEGEESDTDEKCTICLSMLEDGEDVR---RLPCMHLFHQLCVDQWL--AMSKKCPICRV 337
Query: 185 NF 186
+
Sbjct: 338 DI 339
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 125 KEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRK 184
K+E EE + +E+C ICL E+ ++ PC L+H C+ +WL + CP+CR
Sbjct: 282 KDEGEESDTDEKCTICLSMLEDGED---VRRLPCMHLFHQLCVDQWL--AMSKKCPICRV 336
Query: 185 NF 186
+
Sbjct: 337 DI 338
>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2
SV=3
Length = 323
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 126 EEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185
+E + ++ ECAICL + E D+E L C L+H +CI WL + +CPVCR N
Sbjct: 113 KESKIGSKDLECAICLNELE--DHETVRLLPICNHLFHIDCIDTWL--YSHATCPVCRSN 168
Query: 186 FA 187
Sbjct: 169 LT 170
>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9
PE=1 SV=1
Length = 378
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
ECA+CL +FE D+E L PC ++H +C+ WL E + +CP+CR +
Sbjct: 134 ECAVCLCEFE--DDETLRLMPPCCHVFHADCVDVWLSE--HSTCPLCRADLV 181
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185
+CAICL+K+ ID E + PC +H C+ WL L+N++CP CR N
Sbjct: 201 DCAICLEKY--IDGEELRV-IPCTHRFHKRCVDPWL--LQNHTCPHCRHN 245
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL 174
LT + + + + ++ +E + CAICL ++E+ D PC YH C+ WL +
Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRI---LPCAHAYHSRCVDPWLTQT 264
Query: 175 RNYSCPVCRKNFAHG 189
R +CP+C++ G
Sbjct: 265 RK-TCPICKQPVHRG 278
>sp|Q6IV56|RN141_DANRE RING finger protein 141 OS=Danio rerio GN=rnf141 PE=2 SV=2
Length = 222
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 83 LQMFKDISNFAKDALANAIAKNDSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLK 142
+Q++KDI++ A + ++ +A SS + + V + +EEEC IC+
Sbjct: 101 IQLYKDITSQAAEVFSSNVAAEGSSEDTCQASMWMGRVKQLT--------DEEECCICM- 151
Query: 143 KFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFARS 196
D +A L PC + +CI +W + RN CPVCR E + S
Sbjct: 152 -----DGKA-DLILPCAHSFCQKCIDKWSGQSRN--CPVCRIQVTAANESWVMS 197
>sp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL30 OS=Arabidopsis thaliana GN=ATL30 PE=2
SV=1
Length = 289
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNF 186
ECAICL +FE ++ L C ++H ECI +WL N +CPVCR+N
Sbjct: 113 ECAICLLEFEE-EHILLRLLTTCYHVFHQECIDQWLES--NKTCPVCRRNL 160
>sp|Q08D68|ZNRF3_XENTR E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus tropicalis GN=znrf3
PE=2 SV=1
Length = 853
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 137 CAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185
CAICL+K+ ID E + PC +H C+ WL L+N++CP CR N
Sbjct: 266 CAICLEKY--IDGEELRV-IPCTHRFHKRCVDPWL--LQNHTCPHCRHN 309
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL 174
LT + + + + ++ ++ + CAICL ++E+ D PC YH C+ WL +
Sbjct: 208 LTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRV---LPCAHAYHSRCVDPWLTQT 264
Query: 175 RNYSCPVCRKNFAHG 189
R +CP+C++ G
Sbjct: 265 RK-TCPICKQPVHRG 278
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 137 CAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191
CAICL ++E D PC YH +CI W + SCPVC+++ A GTE
Sbjct: 309 CAICLDEYEEGDQLKI---LPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVA-GTE 359
>sp|Q9SUS5|RHA1B_ARATH E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B
PE=2 SV=1
Length = 157
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 99 NAIAKNDSSTIQICVVLTIKG-VNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCP 157
N +++D + + + T+ + VV+ + + E+ C +CL F + D++ L
Sbjct: 46 NETSRSDPTRLALSTSATLANELIPVVRFSDLLTDPEDCCTVCLSDFVS-DDKIRQLP-K 103
Query: 158 CQFLYHHECIWRWLRELRNYSCPVCRKNF 186
C ++HH C+ RW+ + +CP+CR F
Sbjct: 104 CGHVFHHRCLDRWIVDCNKITCPICRNRF 132
>sp|Q9M0R6|ATL35_ARATH Putative RING-H2 finger protein ATL35 OS=Arabidopsis thaliana
GN=ATL35 PE=3 SV=1
Length = 302
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
ECAICL +F +D E PC +H CI WL +CP CR N +
Sbjct: 122 ECAICLSEF--VDKETLRWMPPCSHTFHANCIDVWLSS--QSTCPACRANLS 169
>sp|Q9M0R4|ATL37_ARATH Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana
GN=ATL37 PE=3 SV=1
Length = 357
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
ECAICL +FE D E PC +H CI WL +CPVCR N +
Sbjct: 119 ECAICLCEFE--DEEPLRWMPPCSHTFHANCIDEWLSS--RSTCPVCRANLS 166
>sp|Q2XNS1|RN141_CANFA RING finger protein 141 OS=Canis familiaris GN=RNF141 PE=2 SV=1
Length = 231
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 83 LQMFKDISNFAKDALANAIAKND----SSTIQICVVLTIKGVNHVVKEEEEEEEEEEECA 138
+Q++KDI++ A LA + D SS++ C G ++ +EEEC
Sbjct: 105 IQLYKDITSQASGVLAQSSTSEDPDENSSSVTSCQASLWMG-------RVKQLTDEEECC 157
Query: 139 ICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFARS 196
IC+ D A L PC + +CI +W RN CP+CR E + S
Sbjct: 158 ICM------DGRA-DLILPCAHSFCQKCIDKWSDRHRN--CPICRLQMTGANESWVVS 206
>sp|Q5SSZ7|ZNRF3_MOUSE E3 ubiquitin-protein ligase ZNRF3 OS=Mus musculus GN=Znrf3 PE=2
SV=1
Length = 913
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185
+CAICL+K+ ID E + PC +H +C+ WL L++++CP CR N
Sbjct: 289 DCAICLEKY--IDGEELRV-IPCTHRFHRKCVDPWL--LQHHTCPHCRHN 333
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 137 CAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHF 193
CAICL ++E D PC YH +CI W + SCPVC+++ A + F
Sbjct: 309 CAICLDEYEEGDQLKI---LPCSHTYHCKCIDPWFSQAPRRSCPVCKQSVAATEDSF 362
>sp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15
PE=1 SV=1
Length = 381
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
+E EC +CL +FE D+E L C ++H CI WLR +CP+CR N
Sbjct: 113 KEALECPVCLNEFE--DDETLRLIPQCCHVFHPGCIDAWLRS--QTTCPLCRANLV 164
>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2
SV=2
Length = 404
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNF 186
+E EC++CL +FE D+E L C ++H CI WLR + +CP+CR +
Sbjct: 139 KEALECSVCLNEFE--DDETLRLIPKCCHVFHPGCIDAWLRS--HTTCPLCRADL 189
>sp|Q8W4Q5|RIN3_ARATH E3 ubiquitin protein ligase RIN3 OS=Arabidopsis thaliana GN=RIN3
PE=1 SV=2
Length = 577
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 96 ALANAIAKNDSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLN 155
AL ++I K I++ V L + EE + ++ECAIC + A +
Sbjct: 296 ALLSSILKRIKGYIKLRVALGALHAALLDATSEELRDYDDECAICREPM------AKAKR 349
Query: 156 CPCQFLYHHECIWRWLRELRN--YSCPVCRKNFAHGTEHFARSPCR 199
C L+H C+ WL + N YSCP CRK G +P R
Sbjct: 350 LHCNHLFHLGCLRSWLDQGLNEVYSCPTCRKPLFVGRTESEANPSR 395
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWLRE 173
LT + ++++ E + + C++C+ ++ E L PC YH CI RWL E
Sbjct: 681 LTKEQIDNLSTRNYGENDALKTCSVCITEY----TEGNKLRKLPCSHEYHIHCIDRWLSE 736
Query: 174 LRNYSCPVCRK 184
N +CP+CR+
Sbjct: 737 --NSTCPICRR 745
>sp|Q9Y225|RNF24_HUMAN RING finger protein 24 OS=Homo sapiens GN=RNF24 PE=1 SV=1
Length = 148
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 123 VVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVC 182
++KE+ +E E CA+CL+ F+ D CPC+ +H +C+ +WL E+R CP+C
Sbjct: 64 ILKEKVKELNLHELCAVCLEDFKPRDELGI---CPCKHAFHRKCLIKWL-EVRK-VCPLC 118
>sp|Q9ULT6|ZNRF3_HUMAN E3 ubiquitin-protein ligase ZNRF3 OS=Homo sapiens GN=ZNRF3 PE=1
SV=3
Length = 936
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 137 CAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185
CAICL+K+ ID E + PC +H +C+ WL L++++CP CR N
Sbjct: 293 CAICLEKY--IDGEELRV-IPCTHRFHRKCVDPWL--LQHHTCPHCRHN 336
>sp|Q86XS8|GOLI_HUMAN E3 ubiquitin-protein ligase RNF130 OS=Homo sapiens GN=RNF130 PE=1
SV=1
Length = 419
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 95 DALANAIAKNDSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL 154
DA AI+K + T++ K ++E + + + CA+C++ ++ N+ +
Sbjct: 236 DAAKKAISKLTTRTVK--------------KGDKETDPDFDHCAVCIESYKQ--NDVVRI 279
Query: 155 NCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFARSPC 198
PC+ ++H C+ WL E + +CP+C+ N PC
Sbjct: 280 -LPCKHVFHKSCVDPWLSE--HCTCPMCKLNILKALGIVPNLPC 320
>sp|Q5DTZ6|RN150_MOUSE RING finger protein 150 OS=Mus musculus GN=Rnf150 PE=2 SV=2
Length = 437
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 120 VNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSC 179
V + K ++E E + + CA+C++ ++ N+ + PC+ L+H C+ WL + R +C
Sbjct: 260 VRTIRKGDKETESDFDNCAVCIEGYK--PNDVVRI-LPCRHLFHKSCVDPWLLDHR--TC 314
Query: 180 PVCRKNF 186
P+C+ N
Sbjct: 315 PMCKMNI 321
>sp|A5WWA0|ZNRF3_DANRE E3 ubiquitin-protein ligase ZNRF3 OS=Danio rerio GN=znrf3 PE=3 SV=2
Length = 868
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 137 CAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185
CAICL+K+ ID E + PC +H +C+ WL L++++CP CR N
Sbjct: 267 CAICLEKY--IDGEELRV-IPCAHRFHKKCVDPWL--LQHHTCPHCRHN 310
>sp|Q6Y290|GOLI_RAT E3 ubiquitin-protein ligase RNF130 OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 95 DALANAIAKNDSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL 154
DA AI+K + T++ K ++E + + + CA+C++ ++ N+ +
Sbjct: 236 DAAKKAISKLTTRTVK--------------KGDKETDPDFDHCAVCIESYKQ--NDVVRV 279
Query: 155 NCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFARSPC 198
PC+ ++H C+ WL E + +CP+C+ N PC
Sbjct: 280 -LPCKHVFHKSCVDPWLSE--HCTCPMCKLNILKALGIVPNLPC 320
>sp|Q8VEM1|GOLI_MOUSE E3 ubiquitin-protein ligase RNF130 OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 95 DALANAIAKNDSSTIQICVVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL 154
DA AI+K + T++ K ++E + + + CA+C++ ++ N+ +
Sbjct: 236 DAAKKAISKLTTRTVK--------------KGDKETDPDFDHCAVCIESYKQ--NDVVRV 279
Query: 155 NCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFARSPC 198
PC+ ++H C+ WL E + +CP+C+ N PC
Sbjct: 280 -LPCKHVFHKSCVDPWLSE--HCTCPMCKLNILKALGIVPNLPC 320
>sp|Q9ULK6|RN150_HUMAN RING finger protein 150 OS=Homo sapiens GN=RNF150 PE=2 SV=2
Length = 438
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 120 VNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSC 179
+ + K ++E E + + CA+C++ ++ N+ + PC+ L+H C+ WL + R +C
Sbjct: 261 IRTIKKGDKETESDFDNCAVCIEGYK--PNDVVRI-LPCRHLFHKSCVDPWLLDHR--TC 315
Query: 180 PVCRKNF 186
P+C+ N
Sbjct: 316 PMCKMNI 322
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 42.0 bits (97), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWLRE 173
LT + ++++ E + + C++C+ ++ E L PC YH CI RWL E
Sbjct: 546 LTKEQIDNLSTRNFGENDALKTCSVCITEY----TEGNKLRKLPCSHEYHIHCIDRWLSE 601
Query: 174 LRNYSCPVCRK 184
N +CP+CR+
Sbjct: 602 --NSTCPICRR 610
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 OS=Mus musculus GN=Rnf24 PE=2 SV=1
Length = 148
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 123 VVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVC 182
++KE+ +E E CA+CL+ F+ D CPC+ +H +C+ +WL E+R CP+C
Sbjct: 64 ILKEKVKELNLHELCAVCLEDFKPRDELGI---CPCKHAFHRKCLVKWL-EVRK-VCPLC 118
>sp|Q8GT74|NIP2_ARATH NEP1-interacting protein 2 OS=Arabidopsis thaliana GN=NIP2 PE=1
SV=1
Length = 241
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL 174
+TI G N+ + E + C++CL+ F+ + SL C ++H CI WL L
Sbjct: 179 MTITGNNNT-----DASENTDSCSVCLQDFQ-LGETVRSLP-HCHHMFHLPCIDNWL--L 229
Query: 175 RNYSCPVCRKNF 186
R+ SCP+CR++
Sbjct: 230 RHGSCPMCRRDI 241
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWLRE 173
LT + ++++ E + + C++C+ ++ E L PC YH CI RWL E
Sbjct: 548 LTKEQIDNLAMRSFGENDALKTCSVCITEY----TEGNKLRKLPCSHEYHVHCIDRWLSE 603
Query: 174 LRNYSCPVCRK 184
N +CP+CR+
Sbjct: 604 --NSTCPICRR 612
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 115 LTIKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWLRE 173
LT + ++++ E + + C++C+ ++ E L PC YH CI RWL E
Sbjct: 563 LTKEQIDNLSTRNFGENDALKTCSVCITEY----TEGNKLRKLPCSHEYHVHCIDRWLSE 618
Query: 174 LRNYSCPVCRK 184
N +CP+CR+
Sbjct: 619 --NSTCPICRR 627
>sp|Q32L15|RN141_BOVIN RING finger protein 141 OS=Bos taurus GN=RNF141 PE=2 SV=1
Length = 230
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 83 LQMFKDISNFAKDALANAIAKND----SSTIQICVVLTIKGVNHVVKEEEEEEEEEEECA 138
+Q++KDI++ A LA + D S+++ C G ++ +EEEC
Sbjct: 104 IQLYKDITSQAAGVLAQSSTSEDADENSASVTSCQASLWMG-------RVKQLTDEEECC 156
Query: 139 ICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFARS 196
IC+ D A L PC + +CI +W RN CP+CR E + S
Sbjct: 157 ICM------DGRA-DLILPCAHSFCQKCIDKWSDRHRN--CPICRLQMTGANESWVVS 205
>sp|Q65XX2|LTN1_CAEEL E3 ubiquitin-protein ligase listerin OS=Caenorhabditis elegans
GN=Y54E10A.11 PE=3 SV=1
Length = 1446
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 117 IKGVNHVVKEEEEEEEEEEECAICLKKFENIDNEATSLNCP-CQFLYHHECIWRWLRELR 175
++G+ + ++ E E+C IC+ ++ + C C+ +H C+++W
Sbjct: 1375 LEGIEMWKRNVDKGVEGVEDCTICMMTVHQQTHQLPKIKCKQCKNKFHSNCLYKWFESSN 1434
Query: 176 NYSCPVCRKNFA 187
+CP+CR NF
Sbjct: 1435 QSTCPLCRNNFT 1446
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187
E+ +CA+CL +F D + L C +H CI WL L N +CP+CR++ +
Sbjct: 202 EQPFDCAVCLNEFS--DTDKLRLLPVCSHAFHLHCIDTWL--LSNSTCPLCRRSLS 253
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 137 CAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWLRELRNYSCPVCRK 184
C++C+ ++ E L PC YH CI RWL E N +CP+CR+
Sbjct: 546 CSVCITEY----TEGNKLRKLPCSHEYHVHCIDRWLSE--NSTCPICRR 588
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,890,138
Number of Sequences: 539616
Number of extensions: 3343576
Number of successful extensions: 31317
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 397
Number of HSP's that attempted gapping in prelim test: 30593
Number of HSP's gapped (non-prelim): 821
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)