Query 041895
Match_columns 206
No_of_seqs 195 out of 1744
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.7 1.6E-17 5.6E-22 114.2 2.5 54 131-189 20-73 (75)
2 2l0b_A E3 ubiquitin-protein li 99.6 1.6E-16 5.3E-21 113.6 5.2 72 112-188 17-89 (91)
3 1iym_A EL5; ring-H2 finger, ub 99.6 2.1E-16 7.1E-21 102.0 3.5 52 132-187 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.6 5.2E-16 1.8E-20 104.8 4.6 55 131-190 11-65 (69)
5 2ep4_A Ring finger protein 24; 99.6 5.9E-16 2E-20 105.9 4.6 58 131-193 12-69 (74)
6 2ect_A Ring finger protein 126 99.6 8.6E-16 2.9E-20 106.1 4.7 57 131-192 12-68 (78)
7 2ecl_A Ring-box protein 2; RNF 99.6 6.5E-16 2.2E-20 108.1 3.1 54 132-189 13-77 (81)
8 3dpl_R Ring-box protein 1; ubi 99.5 1.6E-15 5.6E-20 111.5 3.4 70 113-189 18-102 (106)
9 2ecm_A Ring finger and CHY zin 99.5 2.7E-15 9.2E-20 96.6 3.4 51 132-187 3-54 (55)
10 2d8s_A Cellular modulator of i 99.5 1.6E-14 5.4E-19 101.0 5.0 60 131-194 12-76 (80)
11 3ng2_A RNF4, snurf, ring finge 99.5 6.9E-15 2.4E-19 99.5 2.9 55 131-190 7-65 (71)
12 1v87_A Deltex protein 2; ring- 99.5 2.4E-14 8.1E-19 105.7 6.1 56 133-191 24-97 (114)
13 4a0k_B E3 ubiquitin-protein li 99.5 1.9E-15 6.6E-20 112.9 -0.9 70 113-189 29-113 (117)
14 2xeu_A Ring finger protein 4; 99.5 1.1E-14 3.6E-19 96.4 2.7 53 133-190 2-58 (64)
15 2ea6_A Ring finger protein 4; 99.5 1.5E-14 5.3E-19 97.0 3.2 53 131-188 12-68 (69)
16 2ecn_A Ring finger protein 141 99.4 1.9E-14 6.5E-19 97.3 2.3 55 131-194 12-66 (70)
17 1chc_A Equine herpes virus-1 r 99.4 3.9E-14 1.3E-18 95.1 2.9 51 132-189 3-53 (68)
18 2djb_A Polycomb group ring fin 99.4 9.6E-14 3.3E-18 94.5 4.4 57 131-194 12-68 (72)
19 2d8t_A Dactylidin, ring finger 99.4 6.4E-14 2.2E-18 95.1 1.7 52 131-190 12-63 (71)
20 2ct2_A Tripartite motif protei 99.4 2.5E-13 8.4E-18 95.4 4.6 57 131-190 12-70 (88)
21 2ct0_A Non-SMC element 1 homol 99.4 3.6E-13 1.2E-17 92.7 4.6 60 131-195 12-71 (74)
22 2ysl_A Tripartite motif-contai 99.3 8.8E-13 3E-17 89.5 4.5 54 131-190 17-71 (73)
23 4ayc_A E3 ubiquitin-protein li 99.3 4.2E-13 1.4E-17 102.6 3.1 49 133-189 52-100 (138)
24 2ecy_A TNF receptor-associated 99.3 1E-12 3.5E-17 87.8 4.6 52 132-190 13-64 (66)
25 2yur_A Retinoblastoma-binding 99.3 1.4E-12 4.7E-17 89.3 5.2 57 131-192 12-68 (74)
26 2csy_A Zinc finger protein 183 99.3 7.7E-13 2.6E-17 91.9 3.6 49 131-187 12-60 (81)
27 1g25_A CDK-activating kinase a 99.3 1.6E-12 5.4E-17 86.6 4.6 54 133-190 2-57 (65)
28 4ap4_A E3 ubiquitin ligase RNF 99.3 9.9E-13 3.4E-17 98.6 4.0 55 132-191 5-63 (133)
29 3lrq_A E3 ubiquitin-protein li 99.3 7.7E-13 2.6E-17 95.8 2.1 53 131-190 19-72 (100)
30 2y43_A E3 ubiquitin-protein li 99.3 1.8E-12 6.2E-17 93.3 3.2 51 132-189 20-70 (99)
31 1t1h_A Gspef-atpub14, armadill 99.3 3.6E-12 1.2E-16 87.7 4.6 51 132-190 6-57 (78)
32 2ckl_A Polycomb group ring fin 99.3 3.6E-12 1.2E-16 93.2 4.5 52 131-189 12-63 (108)
33 2ecw_A Tripartite motif-contai 99.2 5.5E-12 1.9E-16 87.5 3.8 54 131-190 16-73 (85)
34 4ap4_A E3 ubiquitin ligase RNF 99.2 2.9E-12 1E-16 96.0 2.6 55 131-190 69-127 (133)
35 2egp_A Tripartite motif-contai 99.2 2E-12 6.8E-17 89.0 1.3 51 131-189 9-66 (79)
36 2ecv_A Tripartite motif-contai 99.2 5.7E-12 2E-16 87.5 3.2 54 131-190 16-73 (85)
37 1e4u_A Transcriptional repress 99.2 1.4E-11 4.9E-16 85.5 5.1 60 131-194 8-68 (78)
38 2ysj_A Tripartite motif-contai 99.2 9.7E-12 3.3E-16 82.1 3.8 46 131-182 17-63 (63)
39 3ztg_A E3 ubiquitin-protein li 99.2 1.5E-11 5E-16 87.2 4.9 54 131-189 10-63 (92)
40 2ecj_A Tripartite motif-contai 99.2 1.1E-11 3.7E-16 80.3 3.5 46 131-182 12-58 (58)
41 3fl2_A E3 ubiquitin-protein li 99.2 1.3E-11 4.3E-16 92.5 4.1 50 132-188 50-99 (124)
42 2ckl_B Ubiquitin ligase protei 99.2 1.2E-11 4.2E-16 96.9 3.6 52 132-189 52-103 (165)
43 1jm7_A BRCA1, breast cancer ty 99.1 2E-11 6.9E-16 89.3 2.9 52 133-190 20-72 (112)
44 1z6u_A NP95-like ring finger p 99.1 4.8E-11 1.6E-15 92.6 4.1 51 132-189 76-126 (150)
45 3hct_A TNF receptor-associated 99.1 3.1E-11 1E-15 89.7 2.1 52 131-190 15-67 (118)
46 1rmd_A RAG1; V(D)J recombinati 99.1 3.4E-11 1.2E-15 89.0 2.3 52 133-191 22-73 (116)
47 3l11_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 90.2 0.3 49 132-188 13-62 (115)
48 2vje_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 78.5 2.7 49 132-188 6-57 (64)
49 1vyx_A ORF K3, K3RING; zinc-bi 99.0 1.7E-10 5.7E-15 76.1 4.1 54 131-188 3-59 (60)
50 2vje_B MDM4 protein; proto-onc 99.0 1.3E-10 4.6E-15 77.1 2.9 52 131-188 4-56 (63)
51 3knv_A TNF receptor-associated 99.0 1.5E-10 5E-15 89.0 2.7 52 131-189 28-79 (141)
52 2y1n_A E3 ubiquitin-protein li 99.0 2.4E-10 8.1E-15 101.0 4.3 50 134-190 332-381 (389)
53 2kr4_A Ubiquitin conjugation f 99.0 2.1E-10 7.2E-15 80.6 3.1 51 132-190 12-62 (85)
54 2kre_A Ubiquitin conjugation f 99.0 3.1E-10 1.1E-14 82.3 4.0 51 132-190 27-77 (100)
55 1wgm_A Ubiquitin conjugation f 99.0 4.5E-10 1.5E-14 81.1 4.5 51 132-190 20-71 (98)
56 1jm7_B BARD1, BRCA1-associated 98.9 1.3E-10 4.4E-15 86.2 0.9 48 132-189 20-68 (117)
57 1bor_A Transcription factor PM 98.9 4.4E-10 1.5E-14 72.7 2.0 48 132-190 4-51 (56)
58 3k1l_B Fancl; UBC, ring, RWD, 98.9 1E-09 3.4E-14 95.2 4.4 57 131-189 305-374 (381)
59 4ic3_A E3 ubiquitin-protein li 98.9 3.7E-10 1.3E-14 77.2 0.7 46 132-189 22-68 (74)
60 3hcs_A TNF receptor-associated 98.8 2.4E-09 8.4E-14 84.0 3.2 53 131-190 15-67 (170)
61 2c2l_A CHIP, carboxy terminus 98.8 2.8E-09 9.6E-14 89.0 3.4 50 133-189 207-256 (281)
62 1wim_A KIAA0161 protein; ring 98.7 3.5E-09 1.2E-13 75.4 2.9 51 132-185 3-61 (94)
63 2yu4_A E3 SUMO-protein ligase 98.7 3.2E-09 1.1E-13 75.8 2.2 53 132-189 5-64 (94)
64 2ecg_A Baculoviral IAP repeat- 98.7 3.1E-09 1.1E-13 72.6 1.7 49 132-192 23-72 (75)
65 3htk_C E3 SUMO-protein ligase 98.6 1E-08 3.6E-13 85.9 3.1 55 132-191 179-235 (267)
66 2ea5_A Cell growth regulator w 98.6 1.2E-08 4.2E-13 68.6 2.9 52 131-194 12-64 (68)
67 2f42_A STIP1 homology and U-bo 98.6 1.7E-08 5.7E-13 80.5 3.7 52 132-190 104-155 (179)
68 2yho_A E3 ubiquitin-protein li 98.6 6.9E-09 2.4E-13 71.9 0.3 50 132-193 16-66 (79)
69 2bay_A PRE-mRNA splicing facto 98.5 3E-08 1E-12 65.4 1.7 49 135-191 4-53 (61)
70 3t6p_A Baculoviral IAP repeat- 98.3 8.5E-08 2.9E-12 83.7 1.1 45 132-188 293-338 (345)
71 3nw0_A Non-structural maintena 98.3 7.1E-07 2.4E-11 74.0 5.3 55 133-192 179-233 (238)
72 3vk6_A E3 ubiquitin-protein li 98.2 7.5E-07 2.6E-11 63.9 4.0 48 136-189 3-50 (101)
73 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0074 2.5E-07 42.5 2.5 35 133-170 2-36 (101)
74 2ko5_A Ring finger protein Z; 94.7 0.016 5.4E-07 40.9 2.4 51 132-191 26-76 (99)
75 2lri_C Autoimmune regulator; Z 94.1 0.037 1.3E-06 36.4 3.1 50 131-186 9-60 (66)
76 1we9_A PHD finger family prote 89.5 0.072 2.5E-06 34.4 0.2 53 131-185 3-58 (64)
77 2vpb_A Hpygo1, pygopus homolog 88.8 0.33 1.1E-05 31.7 3.0 36 131-168 5-41 (65)
78 2k16_A Transcription initiatio 88.4 0.13 4.6E-06 34.2 0.9 53 131-186 15-69 (75)
79 3o36_A Transcription intermedi 87.8 0.16 5.4E-06 39.7 1.1 49 133-187 3-53 (184)
80 2l5u_A Chromodomain-helicase-D 87.6 0.26 8.8E-06 31.6 1.9 49 131-185 8-58 (61)
81 2yql_A PHD finger protein 21A; 85.8 0.075 2.6E-06 33.6 -1.5 48 131-184 6-55 (56)
82 1f62_A Transcription factor WS 85.7 0.36 1.2E-05 29.5 1.7 46 136-184 2-49 (51)
83 2ysm_A Myeloid/lymphoid or mix 85.2 0.2 7E-06 35.8 0.5 38 131-171 4-41 (111)
84 1fp0_A KAP-1 corepressor; PHD 83.8 0.41 1.4E-05 33.2 1.5 50 131-186 22-73 (88)
85 2puy_A PHD finger protein 21A; 83.1 0.13 4.5E-06 32.8 -1.2 50 132-187 3-54 (60)
86 1xwh_A Autoimmune regulator; P 82.9 0.26 8.7E-06 32.1 0.1 48 132-185 6-55 (66)
87 1mm2_A MI2-beta; PHD, zinc fin 82.8 0.26 8.8E-06 31.6 0.1 49 131-185 6-56 (61)
88 3lqh_A Histone-lysine N-methyl 82.8 0.4 1.4E-05 37.7 1.3 51 134-186 2-64 (183)
89 2lbm_A Transcriptional regulat 82.8 1.1 3.7E-05 33.8 3.6 48 131-184 60-116 (142)
90 2e6r_A Jumonji/ARID domain-con 82.5 0.083 2.8E-06 37.0 -2.6 51 132-185 14-66 (92)
91 2lv9_A Histone-lysine N-methyl 82.0 0.092 3.1E-06 37.1 -2.5 48 133-184 27-75 (98)
92 2l43_A N-teminal domain from h 81.6 0.38 1.3E-05 33.3 0.6 57 131-189 22-79 (88)
93 2e6s_A E3 ubiquitin-protein li 81.5 0.18 6E-06 34.1 -1.1 47 135-184 27-76 (77)
94 3asl_A E3 ubiquitin-protein li 81.5 0.19 6.5E-06 33.3 -0.9 46 136-184 20-68 (70)
95 3v43_A Histone acetyltransfera 81.2 2.1 7.3E-05 30.5 4.6 34 133-168 4-42 (112)
96 3u5n_A E3 ubiquitin-protein li 80.6 0.24 8E-06 39.5 -0.8 51 131-187 4-56 (207)
97 1y02_A CARP2, FYVE-ring finger 78.3 0.32 1.1E-05 35.7 -0.7 50 132-185 17-66 (120)
98 2yt5_A Metal-response element- 78.2 0.77 2.6E-05 29.5 1.2 54 131-186 3-62 (66)
99 1wfk_A Zinc finger, FYVE domai 78.1 1.2 4.2E-05 30.6 2.3 60 130-191 5-69 (88)
100 2yw8_A RUN and FYVE domain-con 77.9 1.3 4.5E-05 29.9 2.4 57 128-186 13-73 (82)
101 2ri7_A Nucleosome-remodeling f 77.1 0.86 2.9E-05 35.0 1.4 52 131-185 5-59 (174)
102 1weo_A Cellulose synthase, cat 76.9 4.3 0.00015 28.1 4.7 53 133-187 15-69 (93)
103 3t7l_A Zinc finger FYVE domain 76.8 1.7 5.8E-05 29.9 2.8 55 131-187 17-75 (90)
104 1joc_A EEA1, early endosomal a 76.4 1.7 5.7E-05 31.9 2.8 40 128-169 63-102 (125)
105 3ask_A E3 ubiquitin-protein li 74.6 0.5 1.7E-05 38.5 -0.6 48 134-184 174-224 (226)
106 1z2q_A LM5-1; membrane protein 74.4 1.9 6.6E-05 29.2 2.5 56 130-187 17-78 (84)
107 3ql9_A Transcriptional regulat 73.5 2.8 9.6E-05 31.0 3.4 48 131-184 54-110 (129)
108 3m62_A Ubiquitin conjugation f 72.6 3 0.0001 40.7 4.2 51 133-191 890-941 (968)
109 2xb1_A Pygopus homolog 2, B-ce 72.6 2.1 7.1E-05 30.4 2.4 51 134-186 3-62 (105)
110 1wil_A KIAA1045 protein; ring 71.5 3.7 0.00012 28.2 3.3 35 132-170 13-47 (89)
111 1x4u_A Zinc finger, FYVE domai 71.3 2.1 7.3E-05 28.9 2.1 38 131-170 11-48 (84)
112 1wep_A PHF8; structural genomi 71.0 3.4 0.00012 27.5 3.1 52 132-186 10-64 (79)
113 3i2d_A E3 SUMO-protein ligase 70.9 3.9 0.00013 35.6 4.2 54 134-192 249-304 (371)
114 1vfy_A Phosphatidylinositol-3- 69.8 3 0.0001 27.4 2.6 33 135-169 12-44 (73)
115 4fo9_A E3 SUMO-protein ligase 68.5 4.7 0.00016 34.9 4.2 54 134-192 215-270 (360)
116 2kwj_A Zinc finger protein DPF 68.2 1.4 4.7E-05 31.7 0.6 33 135-170 2-41 (114)
117 3v43_A Histone acetyltransfera 67.4 1.3 4.5E-05 31.7 0.4 47 136-184 63-111 (112)
118 2ku3_A Bromodomain-containing 67.0 5.2 0.00018 26.3 3.2 52 131-184 13-65 (71)
119 2kwj_A Zinc finger protein DPF 66.9 0.35 1.2E-05 34.9 -2.8 48 136-186 60-109 (114)
120 2kgg_A Histone demethylase jar 66.7 1.5 5.1E-05 26.9 0.5 46 136-183 4-52 (52)
121 3mpx_A FYVE, rhogef and PH dom 65.4 1.3 4.4E-05 38.6 0.0 54 131-186 372-430 (434)
122 2cs3_A Protein C14ORF4, MY039 65.0 11 0.00039 25.6 4.6 39 132-172 13-51 (93)
123 3shb_A E3 ubiquitin-protein li 64.9 0.89 3E-05 30.6 -0.9 46 136-184 28-76 (77)
124 1z60_A TFIIH basal transcripti 64.7 3.1 0.00011 26.5 1.7 43 135-182 16-58 (59)
125 2ro1_A Transcription intermedi 63.9 1.4 4.6E-05 34.7 -0.2 47 134-186 2-50 (189)
126 1dvp_A HRS, hepatocyte growth 63.2 3.3 0.00011 33.0 2.0 35 134-170 161-195 (220)
127 3zyq_A Hepatocyte growth facto 61.3 3.8 0.00013 32.9 2.1 52 134-187 164-221 (226)
128 1wev_A Riken cDNA 1110020M19; 61.2 1.2 4.1E-05 30.6 -0.8 56 132-189 14-76 (88)
129 1wen_A Inhibitor of growth fam 59.9 3.3 0.00011 27.2 1.2 49 132-185 14-65 (71)
130 1wyh_A SLIM 2, skeletal muscle 58.8 6.3 0.00021 25.0 2.5 42 134-189 5-46 (72)
131 1zbd_B Rabphilin-3A; G protein 58.7 5 0.00017 29.8 2.2 35 132-168 53-88 (134)
132 1zfo_A LAsp-1; LIM domain, zin 57.6 5.3 0.00018 21.7 1.7 28 134-166 3-30 (31)
133 1x4l_A Skeletal muscle LIM-pro 54.9 8.1 0.00028 24.5 2.5 42 133-188 4-47 (72)
134 3mjh_B Early endosome antigen 54.8 3 0.0001 23.6 0.3 17 132-148 3-19 (34)
135 1x61_A Thyroid receptor intera 54.7 8 0.00027 24.5 2.5 40 134-187 5-44 (72)
136 2gmg_A Hypothetical protein PF 54.6 2.5 8.5E-05 30.2 -0.1 25 158-189 73-97 (105)
137 1x4k_A Skeletal muscle LIM-pro 53.2 7.9 0.00027 24.5 2.2 42 134-189 5-46 (72)
138 3fyb_A Protein of unknown func 52.9 5.4 0.00018 28.1 1.4 12 161-172 41-52 (104)
139 2o35_A Hypothetical protein DU 52.3 5.5 0.00019 28.1 1.4 12 161-172 42-53 (105)
140 1wem_A Death associated transc 51.4 11 0.00039 24.6 2.8 49 134-186 16-71 (76)
141 2rsd_A E3 SUMO-protein ligase 51.4 1 3.5E-05 29.3 -2.4 50 133-184 9-64 (68)
142 2jvx_A NF-kappa-B essential mo 50.9 3.8 0.00013 22.1 0.3 14 176-189 3-16 (28)
143 2cu8_A Cysteine-rich protein 2 50.8 7.7 0.00026 25.0 1.9 42 133-189 8-49 (76)
144 1x63_A Skeletal muscle LIM-pro 50.0 9.7 0.00033 24.8 2.3 42 134-189 15-56 (82)
145 4gne_A Histone-lysine N-methyl 49.9 8.1 0.00028 27.5 2.0 49 131-186 12-63 (107)
146 3a1b_A DNA (cytosine-5)-methyl 49.8 8.9 0.0003 29.3 2.3 50 131-184 76-133 (159)
147 2d8v_A Zinc finger FYVE domain 49.7 8.6 0.0003 25.0 1.9 32 131-169 5-37 (67)
148 1weu_A Inhibitor of growth fam 49.3 7.1 0.00024 27.0 1.6 48 133-185 35-85 (91)
149 1g47_A Pinch protein; LIM doma 49.0 7.3 0.00025 25.0 1.5 44 132-189 9-52 (77)
150 2pv0_B DNA (cytosine-5)-methyl 48.7 10 0.00035 33.1 2.8 50 131-184 90-147 (386)
151 2vnf_A ING 4, P29ING4, inhibit 46.3 4 0.00014 25.8 -0.1 47 133-184 9-58 (60)
152 2co8_A NEDD9 interacting prote 44.9 12 0.0004 24.6 2.1 43 133-190 14-56 (82)
153 1x68_A FHL5 protein; four-and- 43.0 16 0.00053 23.4 2.5 40 134-187 5-46 (76)
154 2bzw_B BCL2-antagonist of cell 42.5 8.4 0.00029 20.2 0.8 11 4-14 10-20 (27)
155 2zet_C Melanophilin; complex, 41.3 16 0.00056 27.6 2.6 49 132-184 66-116 (153)
156 1wd2_A Ariadne-1 protein homol 41.3 2.9 0.0001 26.6 -1.3 38 134-172 6-46 (60)
157 3kqi_A GRC5, PHD finger protei 40.5 13 0.00045 24.3 1.8 49 136-186 11-62 (75)
158 3kv5_D JMJC domain-containing 40.5 6.2 0.00021 35.5 0.1 51 133-186 36-89 (488)
159 3c6w_A P28ING5, inhibitor of g 40.5 5.8 0.0002 25.0 -0.0 47 133-184 8-57 (59)
160 2l3k_A Rhombotin-2, linker, LI 40.5 12 0.00041 26.7 1.7 33 135-171 37-69 (123)
161 2cup_A Skeletal muscle LIM-pro 40.2 15 0.00053 24.7 2.2 46 135-189 34-79 (101)
162 2jne_A Hypothetical protein YF 39.3 9.8 0.00033 26.7 1.0 42 133-187 31-72 (101)
163 2ehe_A Four and A half LIM dom 38.5 18 0.00061 23.4 2.2 42 134-189 15-56 (82)
164 1nyp_A Pinch protein; LIM doma 38.4 19 0.00065 22.2 2.3 39 134-188 5-43 (66)
165 2d8z_A Four and A half LIM dom 38.4 17 0.00057 22.8 2.0 40 133-188 4-43 (70)
166 1a7i_A QCRP2 (LIM1); LIM domai 37.6 8 0.00028 25.2 0.3 41 134-189 7-47 (81)
167 3f6q_B LIM and senescent cell 36.4 14 0.00047 23.1 1.3 43 133-189 10-52 (72)
168 2dj7_A Actin-binding LIM prote 36.4 14 0.00049 24.1 1.5 40 133-187 14-53 (80)
169 1iml_A CRIP, cysteine rich int 36.1 13 0.00044 23.8 1.2 40 135-183 28-68 (76)
170 2d8x_A Protein pinch; LIM doma 35.7 21 0.00071 22.3 2.1 41 133-189 4-44 (70)
171 2d8y_A Eplin protein; LIM doma 34.8 20 0.00069 23.8 2.1 41 134-189 15-55 (91)
172 2jmo_A Parkin; IBR, E3 ligase, 34.7 2.9 0.0001 28.0 -2.3 14 158-171 56-69 (80)
173 3o70_A PHD finger protein 13; 34.5 15 0.00053 23.6 1.3 50 131-184 16-66 (68)
174 1wee_A PHD finger family prote 34.3 15 0.0005 23.8 1.2 52 132-186 14-67 (72)
175 1wew_A DNA-binding family prot 34.2 29 0.001 22.7 2.7 51 132-186 14-73 (78)
176 2jrp_A Putative cytoplasmic pr 32.6 19 0.00066 24.3 1.6 13 135-147 3-15 (81)
177 1x64_A Alpha-actinin-2 associa 32.2 23 0.00079 23.4 2.0 42 132-189 23-64 (89)
178 1x62_A C-terminal LIM domain p 31.9 19 0.00066 23.2 1.5 40 132-187 13-52 (79)
179 2ysm_A Myeloid/lymphoid or mix 31.9 17 0.00059 25.4 1.3 47 136-185 56-104 (111)
180 2g6q_A Inhibitor of growth pro 31.8 5.9 0.0002 25.2 -1.1 47 133-184 10-59 (62)
181 2egq_A FHL1 protein; LIM domai 30.3 23 0.00078 22.5 1.7 42 134-189 15-59 (77)
182 2cur_A Skeletal muscle LIM-pro 29.2 24 0.00083 21.9 1.6 38 134-187 5-42 (69)
183 1tac_A TAT protein; transcript 29.1 47 0.0016 22.5 3.0 17 157-182 21-37 (86)
184 2cor_A Pinch protein; LIM doma 28.5 27 0.00092 22.6 1.8 42 132-189 13-54 (79)
185 1wig_A KIAA1808 protein; LIM d 28.3 34 0.0012 21.7 2.2 38 134-187 5-42 (73)
186 2cuq_A Four and A half LIM dom 27.9 27 0.00094 22.3 1.7 39 134-188 15-53 (80)
187 2dar_A PDZ and LIM domain prot 27.7 26 0.00088 23.2 1.6 42 132-189 23-64 (90)
188 1lv3_A Hypothetical protein YA 27.5 15 0.00053 23.9 0.4 12 176-187 9-20 (68)
189 3vhs_A ATPase wrnip1; zinc fin 26.6 16 0.00054 19.2 0.2 13 176-188 6-18 (29)
190 2pk7_A Uncharacterized protein 26.5 11 0.00038 24.6 -0.4 16 174-189 6-21 (69)
191 1m3v_A FLIN4, fusion of the LI 26.4 49 0.0017 23.2 3.0 51 135-191 33-84 (122)
192 2xjy_A Rhombotin-2; oncoprotei 26.4 52 0.0018 23.1 3.2 48 135-188 30-78 (131)
193 3kv4_A PHD finger protein 8; e 25.5 30 0.001 30.7 2.0 52 135-188 5-59 (447)
194 2jny_A Uncharacterized BCR; st 25.0 11 0.00038 24.5 -0.7 19 169-189 5-23 (67)
195 2iyb_E Testin, TESS, TES; LIM 24.4 31 0.0011 21.3 1.4 41 135-189 3-45 (65)
196 2rgt_A Fusion of LIM/homeobox 24.1 41 0.0014 25.0 2.3 11 136-146 67-77 (169)
197 1v6g_A Actin binding LIM prote 24.1 37 0.0013 21.8 1.8 40 134-189 15-54 (81)
198 1rut_X Flinc4, fusion protein 22.5 54 0.0018 24.9 2.7 48 135-188 33-81 (188)
199 2ct7_A Ring finger protein 31; 22.0 6 0.00021 26.7 -2.6 25 158-184 49-75 (86)
200 2jui_A PLNE; ampiphilic alpha 20.5 43 0.0015 18.0 1.2 14 1-14 4-17 (33)
201 3pwf_A Rubrerythrin; non heme 20.3 53 0.0018 24.9 2.3 19 158-185 144-162 (170)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-17 Score=114.22 Aligned_cols=54 Identities=28% Similarity=0.736 Sum_probs=48.9
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
..+...|+||++.|..++.++.+| |+|.||..||.+|+ ..+.+||+||+++.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~---C~H~fh~~Ci~~w~--~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLP---CNHEFHAKCVDKWL--KANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEET---TTEEEETTHHHHHH--HHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEEC---CCCHhHHHHHHHHH--HcCCcCcCcCCcCCCC
Confidence 456789999999999998889999 99999999999999 7788999999998664
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=113.56 Aligned_cols=72 Identities=24% Similarity=0.562 Sum_probs=56.6
Q ss_pred hhhhhhccccchhhh-hhhcccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 112 CVVLTIKGVNHVVKE-EEEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
.+...+..++..... ......++..|+||++.|..++.++.+| |||.||..||.+|+ ..+.+||+||+++..
T Consensus 17 ~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~---C~H~Fh~~Ci~~wl--~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 17 ASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP---CHHYFHKPCVSIWL--QKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET---TTEEEEHHHHHHHH--TTTCBCTTTCCBSSC
T ss_pred CCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC---CCChHHHHHHHHHH--HcCCcCcCcCccCCC
Confidence 344455555544332 2223456779999999999999899999 99999999999999 888999999998865
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.61 E-value=2.1e-16 Score=102.05 Aligned_cols=52 Identities=31% Similarity=0.752 Sum_probs=46.6
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
+++.+|+||++++..++.+..++. |||.||..||.+|+ ..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~--C~H~f~~~Ci~~w~--~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPR--CGHGFHAECVDMWL--GSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSS--SCCEECTTHHHHTT--TTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCC--CCCcccHHHHHHHH--HcCCcCcCCCCEeE
Confidence 456799999999999888888866 99999999999999 88999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=5.2e-16 Score=104.80 Aligned_cols=55 Identities=35% Similarity=0.843 Sum_probs=48.7
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
......|+||++.|..+..++.++ |||.||..||.+|+ ..+.+||+||.++....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~---C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP---CMHLFHQVCVDQWL--ITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT---TSCEEEHHHHHHHH--HHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC---CCCHHHHHHHHHHH--HcCCCCcCcCccccCcC
Confidence 455679999999999888889999 99999999999999 77789999999987653
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-16 Score=105.91 Aligned_cols=58 Identities=26% Similarity=0.634 Sum_probs=50.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCcc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHF 193 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~ 193 (206)
..+...|+||++.|..+..+..++ |+|.||..||.+|+ ..+.+||+||+++.......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~---C~H~f~~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP---CKHAFHRKCLIKWL--EVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET---TTEEEEHHHHHHHH--HHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC---CCCEecHHHHHHHH--HcCCcCCCcCcccccccccC
Confidence 345679999999999988888899 99999999999999 77789999999997655443
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.59 E-value=8.6e-16 Score=106.14 Aligned_cols=57 Identities=30% Similarity=0.688 Sum_probs=50.5
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEH 192 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~ 192 (206)
......|+||++.|..+..+..++ |+|.||..||.+|+ ..+.+||+||+++...+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~---C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP---CNHLFHDSCIVPWL--EQHDSCPVCRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT---TSCEEETTTTHHHH--TTTCSCTTTCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC---CCCeecHHHHHHHH--HcCCcCcCcCCccCCcccC
Confidence 456679999999999888888899 99999999999999 8889999999999776543
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-16 Score=108.11 Aligned_cols=54 Identities=26% Similarity=0.642 Sum_probs=43.3
Q ss_pred ccccccccccccccc-----------CCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFEN-----------IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~-----------~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.++..|+||+++|.. ++.++.++. |+|.||..||.+|| ..+.+||+||+++..+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~--C~H~FH~~Ci~~Wl--~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGE--CNHSFHNCCMSLWV--KQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEET--TSCEEEHHHHHHHT--TTCCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCC--CCCccChHHHHHHH--HhCCCCCCcCCCcchh
Confidence 356678888888854 344555554 99999999999999 8889999999998654
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.55 E-value=1.6e-15 Score=111.53 Aligned_cols=70 Identities=24% Similarity=0.488 Sum_probs=53.4
Q ss_pred hhhhhccccchhhhhhhcccccccccccccccccCC---------------ceeecCCCCCCCcccHhHHHHHHhhCCCC
Q 041895 113 VVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENID---------------NEATSLNCPCQFLYHHECIWRWLRELRNY 177 (206)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~---------------~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~ 177 (206)
.+..++.+..+..... +.+++.|+||++.|.... .++.++ |+|.||..||.+|| ..+.
T Consensus 18 ~r~~ik~~~~v~~w~~--d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~---C~H~FH~~Ci~~Wl--~~~~ 90 (106)
T 3dpl_R 18 KRFEVKKWNAVALWAW--DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV---CNHAFHFHCISRWL--KTRQ 90 (106)
T ss_dssp CSEEEEEEEEEEEEEE--SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET---TSCEEEHHHHHHHH--TTCS
T ss_pred CceeEEEEEEeeEeec--CCCCCCCccCChhHhCcCchhhccccccCCccceEeecc---cCcEECHHHHHHHH--HcCC
Confidence 3445566655555444 345679999999998541 356678 99999999999999 8899
Q ss_pred ccccccccccCC
Q 041895 178 SCPVCRKNFAHG 189 (206)
Q Consensus 178 sCPvCR~~l~~~ 189 (206)
+||+||+++..+
T Consensus 91 ~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 91 VCPLDNREWEFQ 102 (106)
T ss_dssp BCSSSCSBCCEE
T ss_pred cCcCCCCcceee
Confidence 999999997543
No 9
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.54 E-value=2.7e-15 Score=96.65 Aligned_cols=51 Identities=25% Similarity=0.572 Sum_probs=43.5
Q ss_pred cccccccccccccccC-CceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 132 EEEEECAICLKKFENI-DNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~-~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
.....|+||++.+..+ ..++.++ |+|.||..||.+|+ ..+.+||+||+++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP---CGHLLHRTCYEEML--KEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT---TSCEEETTHHHHHH--HHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC---CCCcccHHHHHHHH--HcCCcCCCCCCcCC
Confidence 4567899999999654 4567788 99999999999999 66799999999875
No 10
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.6e-14 Score=101.04 Aligned_cols=60 Identities=18% Similarity=0.536 Sum_probs=48.4
Q ss_pred ccccccccccccccccCCceeecCCCCCC-----CcccHhHHHHHHhhCCCCccccccccccCCCCccC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQ-----FLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFA 194 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~-----H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~~ 194 (206)
..++..|.||++++..++.+ ++| |+ |.||..||.+||....+.+||+||.++..+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p---C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P 76 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP---CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG 76 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS---SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec---cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence 44567999999999887765 689 86 99999999999954444699999999987765443
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.50 E-value=6.9e-15 Score=99.47 Aligned_cols=55 Identities=24% Similarity=0.633 Sum_probs=46.3
Q ss_pred ccccccccccccccccC----CceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENI----DNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~----~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
..++..|+||++.+.+. ..++.++ |||.||..||.+|+ ..+.+||+||.++...+
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSL--KNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT---TSCEEEHHHHHHHH--HHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC---CCChHhHHHHHHHH--HcCCCCCCCCCccChhh
Confidence 34567999999999763 4457788 99999999999999 77789999999987654
No 12
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.50 E-value=2.4e-14 Score=105.74 Aligned_cols=56 Identities=23% Similarity=0.576 Sum_probs=43.9
Q ss_pred ccccccccccccccCC---------------ceeecCCCCCCCcccHhHHHHHHhh---CCCCccccccccccCCCC
Q 041895 133 EEEECAICLKKFENID---------------NEATSLNCPCQFLYHHECIWRWLRE---LRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~---------------~~~~Lp~~~C~H~FH~~CI~~WL~~---~~~~sCPvCR~~l~~~~~ 191 (206)
.+.+|+||++.|..+. .+..++ |+|.||..||.+|+.. ..+.+||+||+.+.....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK---CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS---SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC---CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3468999999997643 234677 9999999999999943 246799999998866543
No 13
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.48 E-value=1.9e-15 Score=112.92 Aligned_cols=70 Identities=24% Similarity=0.488 Sum_probs=10.5
Q ss_pred hhhhhccccchhhhhhhcccccccccccccccccCC---------------ceeecCCCCCCCcccHhHHHHHHhhCCCC
Q 041895 113 VVLTIKGVNHVVKEEEEEEEEEEECAICLKKFENID---------------NEATSLNCPCQFLYHHECIWRWLRELRNY 177 (206)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~C~ICle~~~~~~---------------~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~ 177 (206)
.+..++.+..+..... +.+++.|+||+++|.... .++.++ |+|.||..||.+|| ..+.
T Consensus 29 ~r~~ikkw~ava~w~w--d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~---C~H~FH~~CI~~Wl--~~~~ 101 (117)
T 4a0k_B 29 KRFEVKKWNAVALWAW--DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV---CNHAFHFHCISRWL--KTRQ 101 (117)
T ss_dssp CSEEEEEEEEEEEEEE--CCCC----------------------------------------------------------
T ss_pred CceEEEEEEEEEEEee--cCCCCcCeECChhhcCcChhhhcccccccccccccccCC---cCceEcHHHHHHHH--HcCC
Confidence 3444556655555555 345679999999997532 233356 99999999999999 8899
Q ss_pred ccccccccccCC
Q 041895 178 SCPVCRKNFAHG 189 (206)
Q Consensus 178 sCPvCR~~l~~~ 189 (206)
+||+||+++..+
T Consensus 102 ~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 102 VCPLDNREWEFQ 113 (117)
T ss_dssp ------------
T ss_pred cCCCCCCeeeee
Confidence 999999998654
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=96.41 Aligned_cols=53 Identities=25% Similarity=0.652 Sum_probs=45.0
Q ss_pred ccccccccccccccC----CceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 133 EEEECAICLKKFENI----DNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 133 ~~~~C~ICle~~~~~----~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
+..+|+||++.+... ..++.++ |||.||..||.+|+ ..+.+||+||.++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSL--KNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET---TSCEEEHHHHHHHH--HHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC---CCCchhHHHHHHHH--HcCCCCCCCCccCCccc
Confidence 456899999999763 4456788 99999999999999 67889999999987654
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-14 Score=97.01 Aligned_cols=53 Identities=25% Similarity=0.665 Sum_probs=44.5
Q ss_pred ccccccccccccccccC----CceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 131 EEEEEECAICLKKFENI----DNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~----~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
..+...|+||++.+.+. ..++.++ |||.||..||.+|+ ..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSL--KNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS---SSCEEEHHHHHHHH--HHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC---CCChhcHHHHHHHH--HcCCCCCCCCCccCc
Confidence 34667999999999764 3346788 99999999999999 678899999998853
No 16
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.9e-14 Score=97.27 Aligned_cols=55 Identities=29% Similarity=0.694 Sum_probs=47.5
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCccC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFA 194 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~~ 194 (206)
..+...|+||++.+.. +.++ |||.||..||.+|+ ..+.+||+||.++...+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~----~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD----LILP---CAHSFCQKCIDKWS--DRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCCSSSCCSCCS----EEET---TTEEECHHHHHHSS--CCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCCeeCCcCccC----cccC---CCCcccHHHHHHHH--HCcCcCCCcCCcccCCCcccc
Confidence 3456799999999876 6788 99999999999999 889999999999987766543
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.43 E-value=3.9e-14 Score=95.08 Aligned_cols=51 Identities=29% Similarity=0.668 Sum_probs=43.5
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
+.+..|+||++.+.+ ..+.++ |||.||..||.+|+ ..+.+||+||.++...
T Consensus 3 ~~~~~C~IC~~~~~~--~~~~~~---C~H~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSN--YSMALP---CLHAFCYVCITRWI--RQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCS--CEEETT---TTEEESTTHHHHHH--HHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccC--CcEecC---CCCeeHHHHHHHHH--hCcCcCcCCChhhHhh
Confidence 356789999999865 356788 99999999999999 7778999999988643
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.6e-14 Score=94.49 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=46.4
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCccC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFA 194 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~~ 194 (206)
..+...|+||++.+.+ .+..++ |||.||..||.+|+ ..+..||+||.++...+....
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~---CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITE---CLHTFCKSCIVRHF--YYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSS---SCCEECHHHHHHHH--HHCSSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHHC--cCEECC---CCCHHHHHHHHHHH--HcCCcCCCcCcccCccccccc
Confidence 3456799999999976 343448 99999999999999 678899999999987765543
No 19
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.4e-14 Score=95.13 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=44.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+.+ .+.++ |||.||..||.+|+ ..+.+||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~---CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLP---CKHVFCYLCVKGAS--WLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEET---TTEEEEHHHHHHCT--TCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCC---CEEcc---CCCHHHHHHHHHHH--HCCCcCcCcCchhCHhh
Confidence 3456789999999865 45788 99999999999999 88899999999986543
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=95.38 Aligned_cols=57 Identities=23% Similarity=0.451 Sum_probs=46.0
Q ss_pred ccccccccccccccccCCc-eeecCCCCCCCcccHhHHHHHHhhC-CCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDN-EATSLNCPCQFLYHHECIWRWLREL-RNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~-~~~Lp~~~C~H~FH~~CI~~WL~~~-~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.|...+. .+.++ |||.||..||.+|+... ....||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH---CGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS---SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEECC---CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4456799999999987654 67788 99999999999999422 2478999999886654
No 21
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=3.6e-13 Score=92.69 Aligned_cols=60 Identities=17% Similarity=0.425 Sum_probs=47.0
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCccCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFAR 195 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~~~ 195 (206)
.+...+|+||.+.+..+... .. |+|.||..||.+||....+.+||+||.+|..++.+...
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C--~~---C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~~~ 71 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSC--ET---CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKSGP 71 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEEC--SS---SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCCCS
T ss_pred cCCCCcCcchhhHcccCCcc--CC---CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCCCC
Confidence 44568999999999876532 24 99999999999999322338999999999887766543
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.8e-13 Score=89.53 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=43.1
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh-CCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE-LRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~-~~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+.+ .+.++ |||.||..||.+|+.. ..+..||+||.++..++
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID---CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT---TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC---CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 3456799999999875 44678 9999999999999931 14568999999986654
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.33 E-value=4.2e-13 Score=102.60 Aligned_cols=49 Identities=33% Similarity=0.779 Sum_probs=42.6
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
++..|+||++.|.+ .+.+| |||.||..||..|+ ..+.+||+||.++...
T Consensus 52 ~~~~C~iC~~~~~~---~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIE---AVTLN---CAHSFCSYCINEWM--KRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSS---EEEET---TSCEEEHHHHHHHT--TTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCC---ceECC---CCCCccHHHHHHHH--HcCCcCCCCCCcCCCC
Confidence 44689999999965 45788 99999999999999 8899999999998654
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1e-12 Score=87.80 Aligned_cols=52 Identities=15% Similarity=0.434 Sum_probs=42.8
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
.+...|+||++.+.+.. .++ |||.||..||.+|+. ..+..||+||+++..++
T Consensus 13 ~~~~~C~IC~~~~~~p~---~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPK---QTE---CGHRFCESCMAALLS-SSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCCEECTTTCCEESSCC---CCS---SSCCCCHHHHHHHHT-TSSCCCTTTCCCCCTTT
T ss_pred CcCCCCCCCChHhcCee---ECC---CCCHHHHHHHHHHHH-hCcCCCCCCCcCCChhh
Confidence 45678999999997643 478 999999999999994 35678999999987653
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=89.28 Aligned_cols=57 Identities=26% Similarity=0.435 Sum_probs=44.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEH 192 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~ 192 (206)
..+...|+||++.|.+. +.++. |||.||..||.+|+......+||+||+++...+..
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPC--CGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSS--SCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCC--CCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcccc
Confidence 34567999999999752 34665 99999999999999533347999999987655544
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=7.7e-13 Score=91.89 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=42.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
......|+||++.+.+ .+.++ |||.||..||.+|+ ..+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~---CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAFQN---PVVTK---CRHYFCESCALEHF--RATPRCYICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBCCS---EEECT---TSCEEEHHHHHHHH--HHCSBCSSSCCBCC
T ss_pred CCCCCCCcCCCchhcC---eeEcc---CCCHhHHHHHHHHH--HCCCcCCCcCcccc
Confidence 3456789999999965 34688 99999999999999 77889999999986
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=1.6e-12 Score=86.58 Aligned_cols=54 Identities=17% Similarity=0.457 Sum_probs=42.9
Q ss_pred cccccccccc-ccccCCce-eecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 133 EEEECAICLK-KFENIDNE-ATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 133 ~~~~C~ICle-~~~~~~~~-~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
++..|+||++ .+.+.... +.++ |||.||..||.+|+. ..+..||+||+++...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV---CGHTLCESCVDLLFV-RGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT---TCCCEEHHHHHHHHH-TTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC---CCCHhHHHHHHHHHH-cCCCcCCCCCCcccccc
Confidence 3568999999 77665432 4577 999999999999974 45678999999987654
No 28
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=9.9e-13 Score=98.59 Aligned_cols=55 Identities=24% Similarity=0.620 Sum_probs=46.6
Q ss_pred cccccccccccccccC----CceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCC
Q 041895 132 EEEEECAICLKKFENI----DNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~----~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~ 191 (206)
.+..+|+||++.|.+. ..++.++ |||.||..||.+|+ ..+.+||+||+.+...+.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSL--KNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET---TCCEEEHHHHHHHH--TTCSBCTTTCCBCTTTCE
T ss_pred CCCCCCcccChhhhCccccccCeEecC---CCChhhHHHHHHHH--HhCCCCCCCCCcCccccc
Confidence 4567899999999764 4457888 99999999999999 888999999999876553
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.28 E-value=7.7e-13 Score=95.81 Aligned_cols=53 Identities=30% Similarity=0.661 Sum_probs=43.1
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCC-CccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRN-YSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~-~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.|.. .+..++ |||.||..||.+|+ ..+ .+||+||.++...+
T Consensus 19 l~~~~~C~IC~~~~~~--p~~~~~---CgH~FC~~Ci~~~~--~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRD--ARLCPH---CSKLCCFSCIRRWL--TEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp HHHHTBCTTTCSBCSS--EEECTT---TCCEEEHHHHHHHH--HHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCccCCccccC--ccccCC---CCChhhHHHHHHHH--HHCcCCCCCCCCcCCHHH
Confidence 3456799999999975 343388 99999999999999 555 79999999986544
No 30
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=93.33 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=42.5
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.+...|+||++.|.+ .+..++ |||.||..||.+|+ ..+.+||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~--p~~~~~---CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 20 DDLLRCGICFEYFNI--AMIIPQ---CSHNYCSLCIRKFL--SYKTQCPTCCVTVTEP 70 (99)
T ss_dssp HHHTBCTTTCSBCSS--EEECTT---TCCEEEHHHHHHHH--TTCCBCTTTCCBCCGG
T ss_pred CCCCCcccCChhhCC--cCEECC---CCCHhhHHHHHHHH--HCCCCCCCCCCcCChh
Confidence 345789999999976 333347 99999999999999 8889999999988653
No 31
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.26 E-value=3.6e-12 Score=87.70 Aligned_cols=51 Identities=22% Similarity=0.430 Sum_probs=43.2
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCC-CCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELR-NYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~-~~sCPvCR~~l~~~~ 190 (206)
.+...|+||++.|.+ .+.++ |||.||..||.+|+ .. +.+||+||.++...+
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~---CgH~fc~~Ci~~~~--~~~~~~CP~C~~~~~~~~ 57 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS---TGQTYERSSIQKWL--DAGHKTCPKSQETLLHAG 57 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET---TTEEEEHHHHHHHH--TTTCCBCTTTCCBCSSCC
T ss_pred cccCCCCCccccccC---CEEcC---CCCeecHHHHHHHH--HHCcCCCCCCcCCCChhh
Confidence 456799999999975 34678 99999999999999 65 789999999987654
No 32
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=3.6e-12 Score=93.21 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=43.7
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
..+...|+||++.+.+ .+..++ |||.||..||.+|+ ..+.+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~---CgH~fC~~Ci~~~~--~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFID--ATTIIE---CLHSFCKTCIVRYL--ETSKYCPICDVQVHKT 63 (108)
T ss_dssp HGGGTBCTTTSSBCSS--EEEETT---TCCEEEHHHHHHHH--TSCSBCTTTCCBSCSS
T ss_pred cCCcCCCccCChHHhC--cCEeCC---CCChhhHHHHHHHH--HhCCcCcCCCcccccc
Confidence 3456799999999965 344448 99999999999999 8889999999998765
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=5.5e-12 Score=87.54 Aligned_cols=54 Identities=28% Similarity=0.604 Sum_probs=43.5
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC----CCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL----RNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~----~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+... +.++ |||.||..||..|+... ....||+||.++..++
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~---CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEP---VSAD---CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp CCTTTSCTTTCSCCSSC---EECT---TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CccCCCCcCCChhhCcc---eeCC---CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 34567999999998763 3688 99999999999999532 2778999999987653
No 34
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=2.9e-12 Score=95.99 Aligned_cols=55 Identities=24% Similarity=0.631 Sum_probs=45.9
Q ss_pred ccccccccccccccccC----CceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENI----DNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~----~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+... ...+.++ |||.||..||.+|+ ..+.+||+||.++..++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~---CgH~fc~~Ci~~~~--~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE---CGHVFCSQCLRDSL--KNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET---TSBEEEHHHHHHHH--HHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC---CCChhhHHHHHHHH--HcCCCCCCCCCcCChhc
Confidence 34567899999999763 3346778 99999999999999 77889999999987654
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.22 E-value=2e-12 Score=88.98 Aligned_cols=51 Identities=27% Similarity=0.508 Sum_probs=42.5
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCC-------CCccccccccccCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELR-------NYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~-------~~sCPvCR~~l~~~ 189 (206)
..+...|+||++.+.+. +.++ |||.||..||.+|+ .. ...||+||.++...
T Consensus 9 ~~~~~~C~IC~~~~~~p---~~l~---CgH~fC~~Ci~~~~--~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTEP---LSLD---CGHSLCRACITVSN--KEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSSC---CCCS---SSCCCCHHHHSCCC--CCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCCe---eECC---CCCHHHHHHHHHHH--HhcccCCCCCCcCCCCCCcCCHh
Confidence 34567999999999763 3578 99999999999999 54 67899999998764
No 36
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=87.45 Aligned_cols=54 Identities=26% Similarity=0.557 Sum_probs=43.4
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh----CCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE----LRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~----~~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+.+. +.++ |||.||..||..|+.. .....||+||..+...+
T Consensus 16 ~~~~~~C~IC~~~~~~p---~~~~---CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQP---LSLD---CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSSC---BCCS---SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCCc---eeCC---CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 34567999999999763 4578 9999999999999943 12789999999987643
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=1.4e-11 Score=85.45 Aligned_cols=60 Identities=25% Similarity=0.503 Sum_probs=45.7
Q ss_pred ccccccccccccccccCCc-eeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCccC
Q 041895 131 EEEEEECAICLKKFENIDN-EATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEHFA 194 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~-~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~~ 194 (206)
..++.+|+||++.+...+. +..++ |||.||..|+..|.. ..+..||+||+++...+..+.
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~---CGH~fC~~Cl~~~~~-~~~~~CP~CR~~~~~~~~~~~ 68 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT---CGYQICRFCWHRIRT-DENGLCPACRKPYPEDPAVYK 68 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST---TSCCCCHHHHHHHTT-SSCSBCTTTCCBCSSCSSCCC
T ss_pred cccCCcCCccCccCccccccccccC---CCCCcCHHHHHHHHh-cCCCCCCCCCCccCCCchhhc
Confidence 3566799999999865432 22345 999999999999884 456799999999987765543
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=9.7e-12 Score=82.13 Aligned_cols=46 Identities=28% Similarity=0.595 Sum_probs=37.3
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh-CCCCccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE-LRNYSCPVC 182 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~-~~~~sCPvC 182 (206)
..+...|+||++.+.+ .+.++ |||.||..||.+|+.. ..+..||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID---CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT---TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC---CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456799999999975 34678 9999999999999942 156689998
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=87.21 Aligned_cols=54 Identities=28% Similarity=0.471 Sum_probs=42.8
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
..+...|+||++.|.+. +.++. |||.||..||.+|+....+..||+||.++...
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~--CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~ 63 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPC--CGNSYCDECIRTALLESDEHTCPTCHQNDVSP 63 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTT--TCCEECHHHHHHHHHHCTTCCCTTTCCSSCCT
T ss_pred CCcCCCCCCCChhhcCc---eECCC--CCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCc
Confidence 34567999999999752 35665 99999999999999544557999999997433
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=80.26 Aligned_cols=46 Identities=30% Similarity=0.842 Sum_probs=37.5
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh-CCCCccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE-LRNYSCPVC 182 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~-~~~~sCPvC 182 (206)
..+...|+||++.+.+. +.++ |||.||..||.+|+.. ..+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEP---VIIE---CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSC---CCCS---SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCcc---EeCC---CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34567999999999764 4588 9999999999999631 467899998
No 41
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=92.49 Aligned_cols=50 Identities=30% Similarity=0.652 Sum_probs=41.7
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
.+...|+||++.|.. .+.++ |||.||..||..|+. ....+||+||.++..
T Consensus 50 ~~~~~C~IC~~~~~~---p~~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFR---PITTV---CQHNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSS---EEECT---TSCEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcC---cEEee---CCCcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 345689999999975 34678 999999999999994 345599999999976
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.16 E-value=1.2e-11 Score=96.91 Aligned_cols=52 Identities=35% Similarity=0.683 Sum_probs=42.1
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.+...|+||++.|.+ .+..++ |||.||..||..|+. ..+..||+||.++...
T Consensus 52 ~~~~~C~IC~~~~~~--p~~~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 52 HSELMCPICLDMLKN--TMTTKE---CLHRFCADCIITALR-SGNKECPTCRKKLVSK 103 (165)
T ss_dssp HHHHBCTTTSSBCSS--EEEETT---TCCEEEHHHHHHHHH-TTCCBCTTTCCBCCSG
T ss_pred CCCCCCcccChHhhC--cCEeCC---CCChhHHHHHHHHHH-hCcCCCCCCCCcCCCc
Confidence 345699999999976 444458 999999999999994 3378999999998543
No 43
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.12 E-value=2e-11 Score=89.33 Aligned_cols=52 Identities=21% Similarity=0.662 Sum_probs=41.0
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC-CCCccccccccccCCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL-RNYSCPVCRKNFAHGT 190 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~-~~~sCPvCR~~l~~~~ 190 (206)
+...|+||++.+.+. +.++ |||.||..||..|+... ....||+||.++...+
T Consensus 20 ~~~~C~IC~~~~~~p---~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 20 KILECPICLELIKEP---VSTK---CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp HHTSCSSSCCCCSSC---CBCT---TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCCCcccChhhcCe---EECC---CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 456899999998653 3578 99999999999999421 1248999999987654
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.09 E-value=4.8e-11 Score=92.61 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=41.9
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.+...|+||++.|.+ .+.++ |||.||..||..|+. ....+||+||.++...
T Consensus 76 ~~~~~C~IC~~~~~~---pv~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQ---PVTTE---CFHNVCKDCLQRSFK-AQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHTBCTTTSSBCSS---EEECT---TSCEEEHHHHHHHHH-TTCCBCTTTCCBCCTT
T ss_pred ccCCEeecCChhhcC---CEEcC---CCCchhHHHHHHHHH-hCCCcCCCCCccCCCC
Confidence 345789999999875 34588 999999999999994 3345899999999766
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.07 E-value=3.1e-11 Score=89.72 Aligned_cols=52 Identities=23% Similarity=0.498 Sum_probs=42.4
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCC-CccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRN-YSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~-~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+... +.++ |||.||..||.+|+ ..+ .+||+||.++...+
T Consensus 15 ~~~~~~C~IC~~~~~~p---~~~~---CgH~fC~~Ci~~~~--~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 15 LESKYECPICLMALREA---VQTP---CGHRFCKACIIKSI--RDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT---TSCEEEHHHHHHHH--HHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCcCChhhcCe---EECC---cCChhhHHHHHHHH--hhCCCCCCCCCCCcCHHh
Confidence 34567999999999753 4678 99999999999999 444 49999999987643
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.07 E-value=3.4e-11 Score=89.04 Aligned_cols=52 Identities=25% Similarity=0.566 Sum_probs=42.6
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~ 191 (206)
+...|+||++.+.+ .+.++ |||.||..||.+|+. ..+.+||+||.++...+.
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~~ 73 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS---CKHLFCRICILRCLK-VMGSYCPSCRYPCFPTDL 73 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT---TSCEEEHHHHHHHHH-HTCSBCTTTCCBCCGGGC
T ss_pred CCCCCCCCCcHhcC---cEEcC---CCCcccHHHHHHHHh-HCcCcCCCCCCCCCHhhc
Confidence 45789999999865 34588 999999999999994 237799999999876543
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=1.9e-11 Score=90.22 Aligned_cols=49 Identities=22% Similarity=0.583 Sum_probs=41.2
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCC-CCccccccccccC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELR-NYSCPVCRKNFAH 188 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~-~~sCPvCR~~l~~ 188 (206)
.++..|+||++.+.. .+.++ |||.||..||.+|+ .. +.+||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~---CgH~fC~~Ci~~~~--~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP---CNHTLCKPCFQSTV--EKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT---TSCEECHHHHCCCC--CTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcC---CCCHHhHHHHHHHH--hHCcCCCCCCCcccCc
Confidence 445789999999875 34678 99999999999999 54 6799999998864
No 48
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.03 E-value=7.9e-11 Score=78.48 Aligned_cols=49 Identities=29% Similarity=0.510 Sum_probs=40.4
Q ss_pred cccccccccccccccCCceeec--CCCCCCCc-ccHhHHHHHHhhCCCCccccccccccC
Q 041895 132 EEEEECAICLKKFENIDNEATS--LNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~L--p~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
.++..|+||++...+ .+.+ | |||. |+..|+..|. ..+..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~p---CgH~~~C~~C~~~~~--~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGK---TGHLMACFTCAKKLK--KRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETT---EEEEEECHHHHHHHH--HTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC---EEEECCC---CCChhhHHHHHHHHH--HcCCcCCCcCcchhc
Confidence 455689999998755 3344 9 9999 8999999999 778899999998853
No 49
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.03 E-value=1.7e-10 Score=76.14 Aligned_cols=54 Identities=26% Similarity=0.624 Sum_probs=41.3
Q ss_pred ccccccccccccccccCCceeecCCCCCCC---cccHhHHHHHHhhCCCCccccccccccC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQF---LYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H---~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
+++...|.||+++. ++.+ .+| +.|.| .||..|+.+|+..+.+.+||+|+.++..
T Consensus 3 ~~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 35667999999984 3333 588 33445 9999999999965567899999998753
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.01 E-value=1.3e-10 Score=77.12 Aligned_cols=52 Identities=21% Similarity=0.425 Sum_probs=41.0
Q ss_pred ccccccccccccccccCCceeecCCCCCCCc-ccHhHHHHHHhhCCCCccccccccccC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
.+....|+||++...+.. +..+| |||. |+..|+.+|. ..+..||+||+++..
T Consensus 4 ~~~~~~C~IC~~~~~~~~-~~~~p---CgH~~~C~~C~~~~~--~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 4 QNLLKPCSLCEKRPRDGN-IIHGR---TGHLVTCFHCARRLK--KAGASCPICKKEIQL 56 (63)
T ss_dssp GGGGSBCTTTSSSBSCEE-EEETT---EEEEEECHHHHHHHH--HTTCBCTTTCCBCCE
T ss_pred CCcCCCCcccCCcCCCeE-EEecC---CCCHhHHHHHHHHHH--HhCCcCCCcCchhhc
Confidence 345679999999865421 22348 9998 9999999999 777899999998853
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=88.98 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=41.9
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
..+...|+||++.+.+. +.++ |||.||..||.+|+. ..+.+||+||.++...
T Consensus 28 l~~~~~C~IC~~~~~~p---v~~~---CgH~FC~~Ci~~~~~-~~~~~CP~Cr~~~~~~ 79 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRP---FQAQ---CGHRYCSFCLASILS-SGPQNCAACVHEGIYE 79 (141)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT---TSCEEEHHHHHHHGG-GSCEECHHHHHTTCCC
T ss_pred CCcCcCCCCCChhhcCc---EECC---CCCccCHHHHHHHHh-cCCCCCCCCCCccccc
Confidence 45667999999999764 4578 999999999999993 3345999999987543
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.98 E-value=2.4e-10 Score=100.98 Aligned_cols=50 Identities=22% Similarity=0.545 Sum_probs=42.2
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
...|+||++.+.. .+.+| |||.||..||..|+. ..+.+||+||.++....
T Consensus 332 ~~~C~ICle~~~~---pv~lp---CGH~FC~~Ci~~wl~-~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP---CGHLMCTSCLTSWQE-SEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET---TCCEECHHHHHHHHH-HTCSBCTTTCCBCCEEE
T ss_pred CCCCCccCcCCCC---eEEeC---CCChhhHHHHHHHHh-cCCCCCCCCCCccCCce
Confidence 3699999999854 56788 999999999999993 27889999999886653
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.98 E-value=2.1e-10 Score=80.63 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=43.7
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
.+.-.|+||++.|.+ .+.++ |||.|++.||.+|+ ..+.+||+|+.++...+
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~---cGhtf~r~~I~~~l--~~~~~cP~~~~~l~~~~ 62 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP---SGTVMDRSIILRHL--LNSPTDPFNRQMLTESM 62 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT---TSCEEEHHHHHHHH--HHCSBCTTTCCBCCGGG
T ss_pred chheECcccCchhcC---CeECC---CCCEECHHHHHHHH--hcCCCCCCCcCCCChHh
Confidence 456799999999976 45788 99999999999999 66889999999886553
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.97 E-value=3.1e-10 Score=82.26 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=44.3
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
.+.-.|+||++.|.+ .+.++ |||.|+..||.+|+ ..+.+||+|+.++...+
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~---cGhtf~r~~I~~~l--~~~~~cP~~~~~l~~~~ 77 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP---SGTIMDRSIILRHL--LNSPTDPFNRQTLTESM 77 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET---TTEEEEHHHHHHHT--TSCSBCSSSCCBCCTTS
T ss_pred cHhhCCcCccCcccC---CeECC---CCCEEchHHHHHHH--HcCCCCCCCCCCCChhh
Confidence 456799999999976 45788 99999999999999 77899999999987654
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.96 E-value=4.5e-10 Score=81.11 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=43.9
Q ss_pred cccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
.+.-.|+||++.|.+ .++++ || |.|++.||.+|+ ..+.+||+||.++...+
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~---cG~htf~r~cI~~~l--~~~~~cP~~~~~l~~~~ 71 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP---SSRVTVDRSTIARHL--LSDQTDPFNRSPLTMDQ 71 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT---TTCCEEEHHHHHHHT--TTSCBCTTTCSBCCTTT
T ss_pred cHhcCCcCccccccC---CeECC---CCCeEECHHHHHHHH--HhCCCCCCCCCCCChhh
Confidence 356799999999976 34688 99 999999999999 77889999999987654
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.94 E-value=1.3e-10 Score=86.17 Aligned_cols=48 Identities=19% Similarity=0.432 Sum_probs=40.3
Q ss_pred cccccccccccccccCCceeec-CCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATS-LNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~L-p~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.+...|+||++.|.+. +.+ + |||.||..||..|+ . ..||+||..+...
T Consensus 20 ~~~~~C~IC~~~~~~p---v~~~~---CgH~fC~~Ci~~~~--~--~~CP~Cr~~~~~~ 68 (117)
T 1jm7_B 20 EKLLRCSRCTNILREP---VCLGG---CEHIFCSNCVSDCI--G--TGCPVCYTPAWIQ 68 (117)
T ss_dssp HHTTSCSSSCSCCSSC---BCCCS---SSCCBCTTTGGGGT--T--TBCSSSCCBCSCS
T ss_pred hhCCCCCCCChHhhCc---cEeCC---CCCHHHHHHHHHHh--c--CCCcCCCCcCccc
Confidence 4567999999999653 355 8 99999999999999 5 8899999998543
No 57
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=4.4e-10 Score=72.74 Aligned_cols=48 Identities=17% Similarity=0.389 Sum_probs=39.4
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
.+...|+||++.|... +.+| |||.||..||.+| ...||+||+++...+
T Consensus 4 ~~~~~C~IC~~~~~~p---~~l~---CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCP---KLLP---CLHTLCSGCLEAS-----GMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCC---SCST---TSCCSBTTTCSSS-----SSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCe---EEcC---CCCcccHHHHccC-----CCCCCcCCcEeecCC
Confidence 4567899999999864 4688 9999999998763 568999999886554
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.88 E-value=1e-09 Score=95.16 Aligned_cols=57 Identities=23% Similarity=0.581 Sum_probs=41.6
Q ss_pred ccccccccccccccccCCce----eecCCCCCCCcccHhHHHHHHhhCC---------CCccccccccccCC
Q 041895 131 EEEEEECAICLKKFENIDNE----ATSLNCPCQFLYHHECIWRWLRELR---------NYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~----~~Lp~~~C~H~FH~~CI~~WL~~~~---------~~sCPvCR~~l~~~ 189 (206)
+++..+|+||++.+.++..+ +..+ +|+|.||..||.+||.... ..+||.||+++...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~--~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNA--KCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCT--TCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCC--ccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 35677999999999873322 1222 3999999999999994311 14799999988644
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.85 E-value=3.7e-10 Score=77.19 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=38.4
Q ss_pred cccccccccccccccCCceeecCCCCCCCc-ccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.++..|+||++.+.+ .+.+| |||. ||..|+..| ..||+||.++...
T Consensus 22 ~~~~~C~iC~~~~~~---~~~~p---CgH~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 22 QEEKLCKICMDRNIA---IVFVP---CGHLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HHHTBCTTTSSSBCC---EEEET---TCCBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred ccCCCCCCCCCCCCC---EEEcC---CCChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 455689999998765 55789 9999 999999888 6999999988643
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78 E-value=2.4e-09 Score=84.04 Aligned_cols=53 Identities=25% Similarity=0.509 Sum_probs=42.6
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
..+...|+||++.+.+. +.++ |||.||..||.+|+. ..+.+||+||.++...+
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~---CgH~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP---CGHRFCKACIIKSIR-DAGHKCPVDNEILLENQ 67 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT---TSCEEEHHHHHHHHH-HHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCChhhcCc---EECC---CCCHHHHHHHHHHHH-hCCCCCCCCccCcchhh
Confidence 34567999999999763 4578 999999999999994 23459999999986643
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.77 E-value=2.8e-09 Score=89.02 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=41.3
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
+.-.|+||++.|.+ .+++| |||.||..||..|+. ..+.+||+||.++...
T Consensus 207 ~~~~c~i~~~~~~d---Pv~~~---~gh~f~~~~i~~~~~-~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMRE---PCITP---SGITYDRKDIEEHLQ-RVGHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSS---EEECS---SCCEEETTHHHHHHH-HTCSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcC---CeECC---CCCEECHHHHHHHHH-HCCCCCcCCCCCCchh
Confidence 46789999999976 44788 999999999999994 2345599999998654
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=3.5e-09 Score=75.39 Aligned_cols=51 Identities=24% Similarity=0.619 Sum_probs=40.2
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC------CCCcccc--cccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL------RNYSCPV--CRKN 185 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~------~~~sCPv--CR~~ 185 (206)
.+..+|+||++++..+..+...+ |||.||..|+.+|+... ..-.||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~---CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ---CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT---TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC---CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 34568999999998766544457 99999999999998531 2347999 9988
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=3.2e-09 Score=75.83 Aligned_cols=53 Identities=17% Similarity=0.421 Sum_probs=39.9
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC----CCCcccc--cccc-ccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL----RNYSCPV--CRKN-FAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~----~~~sCPv--CR~~-l~~~ 189 (206)
.+...|+||++.|.+ ++ +++. |||.|++.||.+|+... ...+||+ |+.. +...
T Consensus 5 ~~~~~CPI~~~~~~d--PV-~~~~--cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~ 64 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK--PV-KNKV--CGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64 (94)
T ss_dssp SSCCBCTTTCSBCSS--EE-EESS--SCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred CcEeECcCcCchhcC--CE-EcCC--CCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence 456789999999976 34 4533 99999999999999421 2358999 9876 5443
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=3.1e-09 Score=72.61 Aligned_cols=49 Identities=22% Similarity=0.462 Sum_probs=38.6
Q ss_pred cccccccccccccccCCceeecCCCCCCCc-ccHhHHHHHHhhCCCCccccccccccCCCCc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAHGTEH 192 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~ 192 (206)
.+...|+||++.+.+ .+.+| |||. ||..|+.. ...||+||.++......
T Consensus 23 ~~~~~C~IC~~~~~~---~~~~p---CgH~~~C~~C~~~------~~~CP~Cr~~i~~~~~i 72 (75)
T 2ecg_A 23 QEEKLCKICMDRNIA---IVFVP---CGHLVTCKQCAEA------VDKCPMCYTVITFKQKI 72 (75)
T ss_dssp HHHHSCSSSCSSCCC---BCCSS---SCCCCBCHHHHHH------CSBCTTTCCBCCCCCBC
T ss_pred CCCCCCCcCCCCCCC---EEEec---CCCHHHHHHHhhC------CCCCccCCceecCcEEE
Confidence 345689999999765 45688 9999 99999964 36899999998665433
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.64 E-value=1e-08 Score=85.90 Aligned_cols=55 Identities=20% Similarity=0.437 Sum_probs=43.3
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccc--ccccccCCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPV--CRKNFAHGTE 191 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPv--CR~~l~~~~~ 191 (206)
...-.|+||++.|.+ +++... |||.|++.||.+|+......+||+ |+..+...+.
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~---CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK---CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS---SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGE
T ss_pred ceeeECcCccCcccC--CeeeCC---CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhC
Confidence 455799999999966 555567 999999999999994223458999 9998866554
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.2e-08 Score=68.60 Aligned_cols=52 Identities=21% Similarity=0.453 Sum_probs=41.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCc-ccHhHHHHHHhhCCCCccccccccccCCCCccC
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAHGTEHFA 194 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~~ 194 (206)
..+...|.||++...+ ++.+| |||. |+..|+.. ...||+||..+...-..+.
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p---CgH~~~C~~C~~~------~~~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP---CRHTCLCDGCVKY------FQQCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT---TTBCCSCTTHHHH------CSSCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCC---EEEEC---CCChhhhHHHHhc------CCCCCCCCcchhceEEeec
Confidence 4456799999998654 66899 9999 99999973 4699999999876555443
No 67
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.62 E-value=1.7e-08 Score=80.45 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=42.1
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
.+.-.|+||++.|.+ .+++| |||.|+..||..|+.. ...+||+|+.++...+
T Consensus 104 p~~f~CPI~~elm~D---PV~~~---~Ghtfer~~I~~~l~~-~~~tcP~t~~~l~~~~ 155 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITP---SGITYDRKDIEEHLQR-VGHFDPVTRSPLTQDQ 155 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECT---TSCEEEHHHHHHHHHH-TCSBCTTTCCBCCGGG
T ss_pred cHhhcccCccccCCC---CeECC---CCCEECHHHHHHHHHh-CCCCCCCCcCCCChhh
Confidence 456799999999976 44678 9999999999999942 2347999999986543
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.58 E-value=6.9e-09 Score=71.86 Aligned_cols=50 Identities=26% Similarity=0.545 Sum_probs=39.5
Q ss_pred cccccccccccccccCCceeecCCCCCCCc-ccHhHHHHHHhhCCCCccccccccccCCCCcc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAHGTEHF 193 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~~ 193 (206)
.+...|+||++.+.+ .+.+| |||. |+..|+..| ..||+||.++...-..|
T Consensus 16 ~~~~~C~IC~~~~~~---~v~~p---CgH~~~C~~C~~~~------~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 16 KEAMLCMVCCEEEIN---STFCP---CGHTVCCESCAAQL------QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HHHTBCTTTSSSBCC---EEEET---TCBCCBCHHHHTTC------SBCTTTCCBCCEEEECB
T ss_pred CCCCEeEEeCcccCc---EEEEC---CCCHHHHHHHHHhc------CcCCCCCchhhCeEEEE
Confidence 345689999998754 66789 9999 999999765 39999999886654443
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=3e-08 Score=65.38 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=41.4
Q ss_pred ccccccccccccCCceeec-CCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCC
Q 041895 135 EECAICLKKFENIDNEATS-LNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~L-p~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~ 191 (206)
..|+||++.+.+ . +.+ + |||+|.+.||.+|| ..+.+||+++.++..++.
T Consensus 4 ~~CpIs~~~m~d--P-V~~~~---sG~~yer~~I~~~l--~~~~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKVPRR--P-VLSPK---SRTIFEKSLLEQYV--KDTGNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSCCSS--E-EEETT---TTEEEEHHHHHHHH--HHHSBCTTTCCBCCGGGC
T ss_pred EEecCCCCCCCC--C-EEeCC---CCcEEcHHHHHHHH--HhCCCCcCCcCCCChhhc
Confidence 479999999985 3 455 7 99999999999999 667789999999976654
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.34 E-value=8.5e-08 Score=83.67 Aligned_cols=45 Identities=29% Similarity=0.608 Sum_probs=38.1
Q ss_pred cccccccccccccccCCceeecCCCCCCCc-ccHhHHHHHHhhCCCCccccccccccC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFL-YHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~-FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
.++..|+||++.+.. .+.+| |||. ||..|+..| ..||+||.++..
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp---CgH~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP---CGHLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET---TCCEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCc---eEEcC---CCChhHhHHHHhcC------CcCCCCCCCccC
Confidence 456799999999865 56789 9999 999999887 589999998854
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.28 E-value=7.1e-07 Score=74.05 Aligned_cols=55 Identities=18% Similarity=0.485 Sum_probs=43.9
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCCc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTEH 192 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~ 192 (206)
....|.||.+-...|. .-+. |+|.||..|+..|+.+..+..||.|+.+|+.+...
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~--C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSS--SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred CCCcCcchhhHHhCCc---ccCc--cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence 4678999999998764 2333 99999999999999433456999999999877544
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.25 E-value=7.5e-07 Score=63.89 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=39.8
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
-|.+|--++.. ..+..| |+|+||.+|+..|.. +..++||+|+.++..-
T Consensus 3 fC~~C~~Pi~i--ygRmIP---CkHvFCydCa~~~~~-~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP---CKHVFCYDCAILHEK-KGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEEEET---TCCEEEHHHHHHHHH-TTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eeeecc---ccccHHHHHHHHHHh-ccCCCCcCcCCeeeee
Confidence 47888877765 677899 999999999999984 5678999999988543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.42 E-value=0.0074 Score=42.54 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=26.6
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHH
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRW 170 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~W 170 (206)
++..|+||++.+.......-+. |+|.|+..|+..|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~---C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT---CEVSYCDECLKAT 36 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT---TTEEECHHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc---CChHHhHHHCHHH
Confidence 3468999998754433334488 9999999999983
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.75 E-value=0.016 Score=40.87 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=39.4
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~ 191 (206)
-+-..|-.|...... + +.. ..|..|..|+...| ..+..||+|+.+++..-.
T Consensus 26 ~G~~nCKsCWf~~k~---L--V~C--~dHYLCl~CLtlmL--~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 26 LGPQFCKSCWFENKG---L--VEC--NNHYLCLNCLTLLL--SVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp SCCCCCCSSCSCCSS---E--EEC--SSCEEEHHHHHHTC--SSSSEETTTTEECCCCSC
T ss_pred cCcccChhhccccCC---e--eee--cchhhHHHHHHHHH--hhccCCcccCCcCCccee
Confidence 345689999876542 2 331 46999999999999 999999999999976643
No 75
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=94.13 E-value=0.037 Score=36.45 Aligned_cols=50 Identities=16% Similarity=0.373 Sum_probs=33.7
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNF 186 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l 186 (206)
......|.||.+. ++.+.--. |...||..|+...|.. ...=.||.|....
T Consensus 9 ~~~~~~C~vC~~~---~~ll~Cd~---C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 9 LAPGARCGVCGDG---TDVLRCTH---CAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CCTTCCCTTTSCC---TTCEECSS---SCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCCcCCCCCC---CeEEECCC---CCCceecccCCCccCcCCCCCEECccccCCC
Confidence 3445689999753 44343333 9999999999988832 1223699997644
No 76
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=89.49 E-value=0.072 Score=34.43 Aligned_cols=53 Identities=17% Similarity=0.512 Sum_probs=34.9
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh---CCCCcccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE---LRNYSCPVCRKN 185 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~---~~~~sCPvCR~~ 185 (206)
+.+...|+||...+.++...+.--. |..=||..|+.--... ...-.||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~--C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDL--CEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSS--SCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccC--CCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4566789999998865443323223 9999999998643210 134579999763
No 77
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.84 E-value=0.33 Score=31.67 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=25.3
Q ss_pred ccccccccccccccccCCceeecC-CCCCCCcccHhHHH
Q 041895 131 EEEEEECAICLKKFENIDNEATSL-NCPCQFLYHHECIW 168 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp-~~~C~H~FH~~CI~ 168 (206)
+.+...|++|..++.++...+.-- . |.--||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~--C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEAS--CQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTT--TCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccC--ccccCchhccC
Confidence 456779999999987765444443 4 99999999985
No 78
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=88.44 E-value=0.13 Score=34.22 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=34.1
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC--CCCccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL--RNYSCPVCRKNF 186 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~--~~~sCPvCR~~l 186 (206)
..+...|.||..... +...+.--. |.--||..|+..-+... ..-.||.|+..+
T Consensus 15 ~~~~~~C~~C~~~~~-~~~mi~CD~--C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 15 GNQIWICPGCNKPDD-GSPMIGCDD--CDDWYHWPCVGIMAAPPEEMQWFCPKCANKI 69 (75)
T ss_dssp SCEEECBTTTTBCCS-SCCEEECSS--SSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred CCCCcCCCCCCCCCC-CCCEEEcCC--CCcccccccCCCCccCCCCCCEEChhccCch
Confidence 345567999988754 332323333 99999999997544111 244699998755
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=87.76 E-value=0.16 Score=39.71 Aligned_cols=49 Identities=22% Similarity=0.467 Sum_probs=32.8
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNFA 187 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l~ 187 (206)
.+..|.||... |+-+..-. |...||..|+..-+.. ...-.||.|+..-.
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~---C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEK---CPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSS---SSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCccccCCCC---CeeeecCC---CCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 45679999854 44333333 9999999998776621 12346999987554
No 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.65 E-value=0.26 Score=31.64 Aligned_cols=49 Identities=22% Similarity=0.565 Sum_probs=32.3
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
...+..|.||... ++.+.-- . |...||..|+..=+.. +..=.||.|.+.
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD-~--C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCD-T--CPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECS-S--SSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECC-C--CChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3456789999873 4433333 3 9999999999875421 123369999753
No 81
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.83 E-value=0.075 Score=33.55 Aligned_cols=48 Identities=25% Similarity=0.578 Sum_probs=31.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~ 184 (206)
+..+..|.||... ++.+.-- . |...||..|+..=|.. +..=.||.|..
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd-~--C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCD-T--CSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECS-S--SSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCC---CeEEEcC-C--CCcceECccCCCCcCCCCCCceEChhhhC
Confidence 4566789999874 4433333 3 9999999999754421 12224888854
No 82
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.66 E-value=0.36 Score=29.54 Aligned_cols=46 Identities=28% Similarity=0.583 Sum_probs=28.9
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRK 184 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~ 184 (206)
.|.||...-..++.+.-- . |...||..|+..=+.. +..=.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~--C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-E--CNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-T--TCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-C--CChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764444433333 3 9999999999653411 11235999864
No 83
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=85.19 E-value=0.2 Score=35.83 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=27.0
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHH
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWL 171 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL 171 (206)
...+..|.||.+.-...+.+.-.. |+..||..|+...+
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~---C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTT---CGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSS---SCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCC---CCCCcChHHhCCcc
Confidence 446779999988743333243344 99999999998766
No 84
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=83.85 E-value=0.41 Score=33.23 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=33.3
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNF 186 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l 186 (206)
...+..|.||... ++.+.-- . |.-.||..|+..=|.. ...=.||.|...-
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD-~--C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCN-Q--CEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECT-T--SSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECC-C--CCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 4566799999964 4433333 3 9999999999765521 1223599997643
No 85
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=83.15 E-value=0.13 Score=32.83 Aligned_cols=50 Identities=24% Similarity=0.549 Sum_probs=32.6
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNFA 187 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l~ 187 (206)
..+..|.||... ++.+.-- . |...||..|+..=+.. ...-.||.|.....
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd-~--C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCD-T--CSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECS-S--SSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcC-C--CCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 345789999874 4434333 3 9999999999854421 12235999976543
No 86
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=82.86 E-value=0.26 Score=32.12 Aligned_cols=48 Identities=27% Similarity=0.607 Sum_probs=31.6
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
..+..|.||... ++.+.-- . |...||..|+..=|.. ...=.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD-~--C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCD-G--CPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECS-S--CCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcC-C--CChhhcccccCCCcCcCCCCCeECccccCc
Confidence 456789999864 4433333 3 9999999999754421 122359999653
No 87
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=82.85 E-value=0.26 Score=31.64 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=31.3
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
+..+..|.||.+. ++.+.-- . |...||..|+..=|.. ...=.||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd-~--C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCD-T--CPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCS-S--SCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcC-C--CCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 3456789999853 3433333 3 9999999999854421 122359999764
No 88
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=82.84 E-value=0.4 Score=37.73 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=34.0
Q ss_pred cccccccccccccCCc---eeecCCCCCCCcccHhHHHH------HHhh---CCCCccccccccc
Q 041895 134 EEECAICLKKFENIDN---EATSLNCPCQFLYHHECIWR------WLRE---LRNYSCPVCRKNF 186 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~---~~~Lp~~~C~H~FH~~CI~~------WL~~---~~~~sCPvCR~~l 186 (206)
+..|+||...+.+++. .+.--. |..=||..|+.- -+.. ...-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~--C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGK--CDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTT--TCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCC--CCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 3569999999988762 323223 999999999842 1100 0156899998754
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=82.76 E-value=1.1 Score=33.85 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=33.0
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh---------hCCCCccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR---------ELRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~---------~~~~~sCPvCR~ 184 (206)
+..+.-|.||.+. |+-+.--. |-..||..||..=+. ....=.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD~---Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCDF---CHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECSS---SCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---CcEEeCCC---CCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 4456789999974 44333333 999999999996551 123446999974
No 90
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.48 E-value=0.083 Score=36.98 Aligned_cols=51 Identities=24% Similarity=0.390 Sum_probs=32.4
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
.+...|.||...-..+..+..- . |...||..|+..=|.. ...=.||.|...
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD-~--C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCD-G--CDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECT-T--TCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcC-C--CCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4456899999875433333333 3 9999999998743311 112249999764
No 91
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=82.04 E-value=0.092 Score=37.15 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=31.2
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh-CCCCccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE-LRNYSCPVCRK 184 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~-~~~~sCPvCR~ 184 (206)
+...| ||-.....+..+.--. |.--||..|+..=+.. ...-.||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~---C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDK---CSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTT---TCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCC---CCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 34567 8987766655444443 9999999998642210 12347999974
No 92
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=81.56 E-value=0.38 Score=33.25 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=35.2
Q ss_pred ccccccccccccccc-cCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 131 EEEEEECAICLKKFE-NIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 131 ~~~~~~C~ICle~~~-~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
..++..|.||...-. +++.++.-.. |.-.||..|+..-+.-...=.||.|.......
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~--C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~ 79 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIPEGQWLCRHCLQSRARP 79 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSS--SCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCC--CCchhhcccCCCCccCCCceECccccCccchh
Confidence 346679999997642 2223333334 98999999987422112233599997765444
No 93
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.51 E-value=0.18 Score=34.14 Aligned_cols=47 Identities=26% Similarity=0.567 Sum_probs=28.8
Q ss_pred ccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC--C-CCccccccc
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL--R-NYSCPVCRK 184 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~--~-~~sCPvCR~ 184 (206)
..|.||...-..++.+.-- . |...||..|+..=|... . .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD-~--C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCD-E--CNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECS-S--SCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcC-C--CCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788898653334433333 3 99999999987533211 1 235888864
No 94
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=81.48 E-value=0.19 Score=33.26 Aligned_cols=46 Identities=22% Similarity=0.585 Sum_probs=27.1
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhhC--C-CCccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLREL--R-NYSCPVCRK 184 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~--~-~~sCPvCR~ 184 (206)
.|.||...-..++ +..--. |...||..|+..=|... . .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~-ll~CD~--C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDK-QLMCDE--CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGG-EEECTT--TCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCC-EEEcCC--CCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 5667775433333 323333 99999999987533211 1 335888865
No 95
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=81.22 E-value=2.1 Score=30.52 Aligned_cols=34 Identities=21% Similarity=0.393 Sum_probs=22.3
Q ss_pred ccccccccccccc-----cCCceeecCCCCCCCcccHhHHH
Q 041895 133 EEEECAICLKKFE-----NIDNEATSLNCPCQFLYHHECIW 168 (206)
Q Consensus 133 ~~~~C~ICle~~~-----~~~~~~~Lp~~~C~H~FH~~CI~ 168 (206)
....|.||+..=. .+++++.-.. |+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~--C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCAD--CGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTT--TCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhh--cCCCCCCchhc
Confidence 4568999987631 1222333333 99999999995
No 96
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=80.63 E-value=0.24 Score=39.52 Aligned_cols=51 Identities=24% Similarity=0.459 Sum_probs=33.4
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNFA 187 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l~ 187 (206)
+..+..|.||... |+ +..-.. |...||..|+...+.. ...-.||.|+..-.
T Consensus 4 d~~~~~C~~C~~~---g~-ll~Cd~--C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GD-LLCCEK--CPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSCSSBTTTCCC---EE-EEECSS--SSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCC---Cc-eEEcCC--CCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3456789999854 33 323333 9999999999776621 12336999987543
No 97
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=78.25 E-value=0.32 Score=35.73 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=31.7
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKN 185 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~ 185 (206)
.....|.+|-..|..-..-..-- .||.+||..|..... .....|-.|-..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR--~CG~ifC~~Cs~~~~--~~vRVC~~C~~~ 66 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCL--DCKKNFCMTCSSQVG--NGPRLCLLCQRF 66 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECT--TTCCEECGGGEEC------CCEEHHHHHH
T ss_pred cccCcccCcCCccccccccccCC--CCCCeeCHHHhCCCC--CCceECHHHHHH
Confidence 34468999999996532222222 399999999988776 567788888554
No 98
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=78.24 E-value=0.77 Score=29.52 Aligned_cols=54 Identities=17% Similarity=0.379 Sum_probs=34.5
Q ss_pred cccccccccccccccc-CCceeecCCCCCCCcccHhHHHHHHhh-----CCCCccccccccc
Q 041895 131 EEEEEECAICLKKFEN-IDNEATSLNCPCQFLYHHECIWRWLRE-----LRNYSCPVCRKNF 186 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~-~~~~~~Lp~~~C~H~FH~~CI~~WL~~-----~~~~sCPvCR~~l 186 (206)
..++..|.||...... +..+..-.. |.-.||..|+..=+.. ...=.||.|....
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~Cd~--C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVICDK--CGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEECSS--SCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC--CChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 4566799999987533 223333334 9999999998753310 2334699996643
No 99
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=78.09 E-value=1.2 Score=30.60 Aligned_cols=60 Identities=18% Similarity=0.348 Sum_probs=38.4
Q ss_pred cccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh-----hCCCCccccccccccCCCC
Q 041895 130 EEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR-----ELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 130 ~~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~-----~~~~~sCPvCR~~l~~~~~ 191 (206)
+..+...|.+|...|..-..-..-- .||.+|+..|....+. ......|-.|-..+.....
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR--~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~~ 69 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCK--NCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSS 69 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECS--SSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCCC
T ss_pred CCCcCCCCcCcCCcccCccccccCC--CCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhccc
Confidence 3456678999999997543222222 3999999999765320 0223568888776654443
No 100
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=77.87 E-value=1.3 Score=29.92 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=33.7
Q ss_pred hhcccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh----hCCCCccccccccc
Q 041895 128 EEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR----ELRNYSCPVCRKNF 186 (206)
Q Consensus 128 ~~~~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~----~~~~~sCPvCR~~l 186 (206)
+..+.+...|.+|...|..-..-..-- .||.+|+..|....+. ......|-.|-..+
T Consensus 13 W~~d~~~~~C~~C~~~Fs~~~RrHHCR--~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 13 WLKDDEATHCRQCEKEFSISRRKHHCR--NCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp --CCCCCCBCTTTCCBCBTTBCCEECT--TTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred cccCccCCcccCcCCcccCccccccCC--CCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 334556678999999997543222222 3999999999765320 01223566665444
No 101
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=77.12 E-value=0.86 Score=34.97 Aligned_cols=52 Identities=23% Similarity=0.498 Sum_probs=32.5
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh---hCCCCcccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR---ELRNYSCPVCRKN 185 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~---~~~~~sCPvCR~~ 185 (206)
..+..-| ||......+...+.--. |..-||..|+.--.. ....-.||.|+..
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd~--C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCDR--CQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECCC--CCchhChhhcCCchhhccCccCeecCCCcch
Confidence 3455678 99988754443333333 999999999953111 0345679999864
No 102
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=76.91 E-value=4.3 Score=28.13 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=38.0
Q ss_pred ccccccccccccccCC--ceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 133 EEEECAICLKKFENID--NEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~--~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
....|.||=+++-... .+.+.- -.|+--.|+.|..-=.. +.+++||-|+..+.
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC-~eC~FPvCrpCyEYErk-eG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVAC-NECGFPACRPCYEYERR-EGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSC-SSSCCCCCHHHHHHHHH-TSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEee-eccCChhhHHHHHHHHh-ccCccccccCCccc
Confidence 4579999999864322 122221 23888899999986554 88999999998875
No 103
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=76.77 E-value=1.7 Score=29.93 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=35.1
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh----hCCCCcccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR----ELRNYSCPVCRKNFA 187 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~----~~~~~sCPvCR~~l~ 187 (206)
+.+...|.+|...|..-..-..-.. ||++|+..|...++. ......|-.|-..+.
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~--CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRA--CGKVFCGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTT--TCCEECGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred cccCCcCcCCCCcccchhhCccccC--CCCEECCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 4456789999999975432222233 999999999776431 022346777765553
No 104
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=76.37 E-value=1.7 Score=31.91 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=27.1
Q ss_pred hhcccccccccccccccccCCceeecCCCCCCCcccHhHHHH
Q 041895 128 EEEEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWR 169 (206)
Q Consensus 128 ~~~~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~ 169 (206)
+..+.+...|.+|...|..-..-..-- .||++||..|...
T Consensus 63 W~~d~~~~~C~~C~~~Fs~~~RrHHCR--~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 63 WAEDNEVQNCMACGKGFSVTVRRHHCR--QCGNIFCAECSAK 102 (125)
T ss_dssp CCCGGGCCBCTTTCCBCCSSSCCEECT--TTCCEECGGGSCE
T ss_pred cccCCCCCCCcCcCCccccccccccCC--CCCeEEChHHhCC
Confidence 333455678999999997543222222 3999999999654
No 105
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=74.64 E-value=0.5 Score=38.47 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=26.7
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CC-CCccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LR-NYSCPVCRK 184 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~-~~sCPvCR~ 184 (206)
...|.||...=..+..+..-. |...||..|+..=|.. .. .=.||.|+.
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD~---C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCDE---CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECSS---SCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcCC---CCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 346888876533344333333 9999999999854421 11 235999965
No 106
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.35 E-value=1.9 Score=29.17 Aligned_cols=56 Identities=16% Similarity=0.350 Sum_probs=34.6
Q ss_pred cccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh------hCCCCcccccccccc
Q 041895 130 EEEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR------ELRNYSCPVCRKNFA 187 (206)
Q Consensus 130 ~~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~------~~~~~sCPvCR~~l~ 187 (206)
.+.+...|.+|...|..-..-..-- .||++|+..|....+. ......|-.|-..+.
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR--~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 78 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCR--NCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALR 78 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECT--TTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHH
T ss_pred cCCCCCCCcCcCCccccchhccccc--CCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHh
Confidence 3556679999999997543222222 3999999999765420 012235666655443
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=73.51 E-value=2.8 Score=31.02 Aligned_cols=48 Identities=21% Similarity=0.512 Sum_probs=31.4
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHH-----hh----CCCCccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWL-----RE----LRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL-----~~----~~~~sCPvCR~ 184 (206)
+..+..|.||-+. ++-+.-- . |-..||..||..=+ .. ...=.|++|+.
T Consensus 54 Dg~~~~C~vC~dG---G~LlcCd-~--Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GNLICCD-F--CHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCC---SEEEECS-S--SSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCC---CeeEecC-C--CchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 4455679999965 3323222 3 89999999999742 11 23347999954
No 108
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=72.65 E-value=3 Score=40.67 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=41.9
Q ss_pred ccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhhCCCCccccccccccCCCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~ 191 (206)
+.-.|+|=++-+.+ .+++| -| +.|-+.+|.+|| ..+.+||+=|.++...+.
T Consensus 890 ~~F~cPIs~~lM~D---PVilp---sG~~TydR~~I~~wl--~~~~tdP~Tr~~L~~~~l 941 (968)
T 3m62_A 890 DEFLDPLMYTIMKD---PVILP---ASKMNIDRSTIKAHL--LSDSTDPFNRMPLKLEDV 941 (968)
T ss_dssp GGGBCTTTCSBCSS---EEECT---TTCCEEEHHHHHHHH--TTCCBCTTTCCBCCGGGC
T ss_pred HHhCCcchhhHHhC---CeEcC---CCCEEECHHHHHHHH--hcCCCCCCCCCCCCcccc
Confidence 34579999998876 45788 77 689999999999 778999999999876543
No 109
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=72.62 E-value=2.1 Score=30.42 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=33.7
Q ss_pred cccccccccccccCCceeecC-CCCCCCcccHhHHHHHH---h-----hCCCCccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWL---R-----ELRNYSCPVCRKNF 186 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp-~~~C~H~FH~~CI~~WL---~-----~~~~~sCPvCR~~l 186 (206)
...|.||..++.++...+.-- . |..=||..|+.-=- . ....-.||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~--C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEAS--CQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTT--TCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCC--cccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 457999999986654443332 3 88999999985210 0 01345799998754
No 110
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=71.46 E-value=3.7 Score=28.22 Aligned_cols=35 Identities=20% Similarity=0.483 Sum_probs=24.6
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHH
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRW 170 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~W 170 (206)
..+..|.||-. +..++ .+|..+|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~~-~t~~~---l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAES---LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSC---CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccc---eeccccccccccHhhcccc
Confidence 35679999853 33333 3552369999999999986
No 111
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.35 E-value=2.1 Score=28.92 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=26.2
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHH
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRW 170 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~W 170 (206)
+.+...|.+|...|..-..-..-- .||.+|+..|....
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR--~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCS--NCGNSFCSRCCSFK 48 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECS--SSCCEECTTTSCEE
T ss_pred CCCCCcCcCcCCccccchhhhhhc--CCCcEEChhhcCCc
Confidence 556678999999996533211222 39999999996543
No 112
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.03 E-value=3.4 Score=27.50 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=32.5
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh---CCCCccccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE---LRNYSCPVCRKNF 186 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~---~~~~sCPvCR~~l 186 (206)
.+..-| ||...+..+...+.--. |..=||..|+.--... ...-.||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGL--CQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTT--TCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCC--CCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 444566 99988753333322223 9999999998632110 2456799998754
No 113
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=70.93 E-value=3.9 Score=35.55 Aligned_cols=54 Identities=17% Similarity=0.421 Sum_probs=36.5
Q ss_pred cccccccccccccCCceeecCCCCCCCc--ccHhHHHHHHhhCCCCccccccccccCCCCc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFL--YHHECIWRWLRELRNYSCPVCRKNFAHGTEH 192 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~--FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~ 192 (206)
.-.|+|=...+.. +++... |.|. |-..=+.+.......-.||+|.+.+..++..
T Consensus 249 SL~CPlS~~ri~~--PvRg~~---C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKY--PSKSIN---CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSS--EEEETT---CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccc--cCcCCc---CCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 3578988777755 566676 9998 5555454444334456799999988666543
No 114
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=69.79 E-value=3 Score=27.39 Aligned_cols=33 Identities=24% Similarity=0.514 Sum_probs=23.2
Q ss_pred ccccccccccccCCceeecCCCCCCCcccHhHHHH
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHHECIWR 169 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~ 169 (206)
..|.+|...|..-..-..-- .||.+|+..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR--~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCR--SCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECT--TTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCC--CCCEEEcccccCC
Confidence 58999999997533222222 3999999999654
No 115
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=68.50 E-value=4.7 Score=34.91 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=36.9
Q ss_pred cccccccccccccCCceeecCCCCCCCc--ccHhHHHHHHhhCCCCccccccccccCCCCc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFL--YHHECIWRWLRELRNYSCPVCRKNFAHGTEH 192 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~--FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~~ 192 (206)
.-.|+|=...+.. +++... |.|. |-..=+.+.......-.||+|.+.+..++..
T Consensus 215 SL~CPlS~~ri~~--P~Rg~~---C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTI--PCRAVT---CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSS--EEEETT---CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceecc--CCcCCC---CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 3479988777755 566676 9998 6655555544334456799999988766543
No 116
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=68.23 E-value=1.4 Score=31.71 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=22.0
Q ss_pred cccccccccccc-------CCceeecCCCCCCCcccHhHHHHH
Q 041895 135 EECAICLKKFEN-------IDNEATSLNCPCQFLYHHECIWRW 170 (206)
Q Consensus 135 ~~C~ICle~~~~-------~~~~~~Lp~~~C~H~FH~~CI~~W 170 (206)
..|.||+..-.. ++-+.-.. |+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~---C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCAD---CGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSS---SCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCC---CCCccchhhCCCh
Confidence 469999876421 22233333 9999999998754
No 117
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=67.42 E-value=1.3 Score=31.68 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=28.7
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRK 184 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~ 184 (206)
.|.||...-.+++.+..-.. |...||..|+..-|.. +..=.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~--C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDS--CDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTT--TCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCC--CCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 68888865333233333333 9999999998765521 11236999874
No 118
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=67.04 E-value=5.2 Score=26.28 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=32.0
Q ss_pred cccccccccccccc-ccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccc
Q 041895 131 EEEEEECAICLKKF-ENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~-~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~ 184 (206)
...+..|.||...- .+++.++.--. |.-.||..|+..-..-+..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~--C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDM--CNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSS--SCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCC--CCCccccccCCCCcCCCCCcCCccCcC
Confidence 45667899998764 22333333334 999999999864221022335888865
No 119
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=66.85 E-value=0.35 Score=34.91 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=29.8
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNF 186 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l 186 (206)
.|.||...-..++.+.-- . |...||..|+..=|.. ...=.||.|...+
T Consensus 60 ~C~~C~~~~~~~~ll~Cd-~--C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD-D--CDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECS-S--SCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcC-C--CCccccccccCCCccCCCCCCeECccccchh
Confidence 688887764444433333 3 9999999998753311 1122499987654
No 120
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.68 E-value=1.5 Score=26.94 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=29.0
Q ss_pred cccccccccccCCceeecC-CCCCCCcccHhHHHHHHh--hCCCCcccccc
Q 041895 136 ECAICLKKFENIDNEATSL-NCPCQFLYHHECIWRWLR--ELRNYSCPVCR 183 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp-~~~C~H~FH~~CI~~WL~--~~~~~sCPvCR 183 (206)
.|.||..++.++...+.-- . |..=||..|+.--.. ....-.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~--C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGG--CDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTT--TCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCC--CCccCcccccCCCccccCCCCEECCCCC
Confidence 5789999886554333332 3 888999999763211 02456788885
No 121
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=65.36 E-value=1.3 Score=38.57 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh-----hCCCCccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR-----ELRNYSCPVCRKNF 186 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~-----~~~~~sCPvCR~~l 186 (206)
+.+...|.+|...|..-..-...- .||++||..|...++. ......|-.|-..+
T Consensus 372 ~~~~~~c~~c~~~f~~~~r~h~Cr--~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 372 VTHVMMCMNCGCDFSLTLRRHHCH--ACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -------------------------------------------------------------
T ss_pred cccCCcCCCcCCCCCCcchhhhcc--cCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 445678999999996432211111 3999999999987651 12245677775544
No 122
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=65.03 E-value=11 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=30.1
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR 172 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~ 172 (206)
...-.|.+|.+.+++.. .+.-| .+=.|.||..|-...+.
T Consensus 13 ~a~l~CtlC~erLEdtH-FVQCP-sv~~HkFCFpCsr~sIk 51 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTH-FVQCP-SVPSHKFCFPCSRESIK 51 (93)
T ss_dssp CCSCCCSSSCSCCSSTT-SEECS-SCSSCEECHHHHHHHHH
T ss_pred CCeeEeecchhhhccCc-eeeCC-CccCCeeeccccHHHHH
Confidence 45578999999997654 44555 34579999999999984
No 123
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=64.91 E-value=0.89 Score=30.61 Aligned_cols=46 Identities=22% Similarity=0.575 Sum_probs=27.1
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCC-Cccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRN-YSCPVCRK 184 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~-~sCPvCR~ 184 (206)
.|.||...-..+..+.-- . |...||..|+..-|.. ... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD-~--C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD-E--CDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECT-T--TCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeC-C--CCCccCcccCCCcccCCCCCCceECcCccc
Confidence 566776654333323222 3 9999999999865521 112 35888875
No 124
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.69 E-value=3.1 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.395 Sum_probs=30.3
Q ss_pred ccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccc
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVC 182 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvC 182 (206)
..|--|...|.... ...-+. |++.|+.+|=. +-|+.=.+||-|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~--C~~~FC~dCD~--fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAV--CQNVFCVDCDV--FVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTT--TTCCBCHHHHH--TTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCc--cCcCcccchhH--HHHhhccCCcCC
Confidence 46999999985322 234555 99999999943 223666789988
No 125
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=63.86 E-value=1.4 Score=34.66 Aligned_cols=47 Identities=26% Similarity=0.571 Sum_probs=30.7
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNF 186 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l 186 (206)
+..|.+|... |+.+.... |...||..|+..=+.. ...-.||.|+..-
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~---C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQ---CEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTT---TCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCC---CCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 3579999854 44333333 8999999999754411 1233699998753
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.16 E-value=3.3 Score=32.98 Aligned_cols=35 Identities=14% Similarity=0.370 Sum_probs=24.6
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHH
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRW 170 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~W 170 (206)
...|.+|...|..-..-..-- .||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr--~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCR--NCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECT--TTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccC--CcCCEEChHHhCCe
Confidence 479999999997533222222 39999999996543
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.26 E-value=3.8 Score=32.91 Aligned_cols=52 Identities=17% Similarity=0.433 Sum_probs=32.5
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh------CCCCcccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE------LRNYSCPVCRKNFA 187 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~------~~~~sCPvCR~~l~ 187 (206)
...|.+|...|..-..-..-.. ||++||..|...+..- .....|-.|-..+.
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~--CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~ 221 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRA--CGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLN 221 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTT--TCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHC
T ss_pred CCCCcCcCCCCCccccccccCC--CcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhh
Confidence 4689999999975432222223 9999999997654310 12345766755443
No 128
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.23 E-value=1.2 Score=30.60 Aligned_cols=56 Identities=18% Similarity=0.411 Sum_probs=35.6
Q ss_pred ccccccccccccccc-CCceeecCCCCCCCcccHhHHHHHHhh------CCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFEN-IDNEATSLNCPCQFLYHHECIWRWLRE------LRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~-~~~~~~Lp~~~C~H~FH~~CI~~WL~~------~~~~sCPvCR~~l~~~ 189 (206)
+.+..|.||...-.. +..+..--. |...||..|+..=|.. ...=.|+.|+......
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD~--C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQE--CHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECSS--SCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCCcCCCCCCCCCCCCCceEECCC--CCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 346789999986432 223333334 9999999999865410 2234699997765443
No 129
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=59.89 E-value=3.3 Score=27.20 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=27.2
Q ss_pred cccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhh--CCCCcccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
.+..-| ||..... +..+ .--++.|. .-||..|+. |.. ...-.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 344567 8987642 4322 11111144 579999997 421 123469999653
No 130
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.83 E-value=6.3 Score=24.99 Aligned_cols=42 Identities=14% Similarity=0.400 Sum_probs=29.8
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|..|-..+..++.++ .. -+..||..|. .|-.|..++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a---~~~~~H~~CF----------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKL-EY---GGQTWHEHCF----------LCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEE-CS---TTCCEETTTC----------BCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEE-EE---CccccCcccC----------eECCCCCcCCCC
Confidence 468999999988654432 22 5778998883 688888877654
No 131
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.70 E-value=5 Score=29.76 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=24.4
Q ss_pred cccccccccccccc-cCCceeecCCCCCCCcccHhHHH
Q 041895 132 EEEEECAICLKKFE-NIDNEATSLNCPCQFLYHHECIW 168 (206)
Q Consensus 132 ~~~~~C~ICle~~~-~~~~~~~Lp~~~C~H~FH~~CI~ 168 (206)
.....|.+|..+|. .+.....-.. |.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~--C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCED--CKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTT--TCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCC--CCcccccccCC
Confidence 45679999999993 3332233333 99999999954
No 132
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=57.58 E-value=5.3 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=20.9
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhH
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHEC 166 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~C 166 (206)
.+.|+.|-...-..+.+ .. =|..||+.|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~--~~---~g~~~Hk~C 30 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKV--NC---LDKFWHKAC 30 (31)
T ss_dssp CCBCSSSCSBCCGGGCC--CS---SSSCCCGGG
T ss_pred CCcCCccCCEEecceeE--EE---CCeEecccC
Confidence 35899999988776543 33 678999998
No 133
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.86 E-value=8.1 Score=24.51 Aligned_cols=42 Identities=19% Similarity=0.465 Sum_probs=29.4
Q ss_pred cccccccccccccc--CCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 133 EEEECAICLKKFEN--IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 133 ~~~~C~ICle~~~~--~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
....|.-|-+.+.. ++.++ .. -+..||..|. .|-.|..+|..
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~~-~a---~~~~wH~~CF----------~C~~C~~~L~~ 47 (72)
T 1x4l_A 4 GSSGCAGCTNPISGLGGTKYI-SF---EERQWHNDCF----------NCKKCSLSLVG 47 (72)
T ss_dssp CSCSBTTTTBCCCCSSSCSCE-EC---SSCEECTTTC----------BCSSSCCBCTT
T ss_pred CCCCCcCCCccccCCCCcceE-EE---CCcccCcccC----------EeccCCCcCCC
Confidence 34689999998875 33332 33 5778998883 78888888753
No 134
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=54.84 E-value=3 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=12.8
Q ss_pred cccccccccccccccCC
Q 041895 132 EEEEECAICLKKFENID 148 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~ 148 (206)
.++-.||||+..+...+
T Consensus 3 ~EGFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 3 SEGFICPQCMKSLGSAD 19 (34)
T ss_dssp SEEEECTTTCCEESSHH
T ss_pred CcccCCcHHHHHcCCHH
Confidence 34579999999986543
No 135
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.71 E-value=8 Score=24.50 Aligned_cols=40 Identities=18% Similarity=0.461 Sum_probs=25.7
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
...|..|-..+...+.++ .. =+..||..|. .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~a---~~~~~H~~CF----------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGV-VA---LDRVFHVGCF----------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCE-EC---SSSEECTTTC----------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEE-EE---CCCeEcccCC----------cccccCCcCC
Confidence 457888888776543332 22 4567888772 6777877774
No 136
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=54.65 E-value=2.5 Score=30.18 Aligned_cols=25 Identities=20% Similarity=0.660 Sum_probs=17.4
Q ss_pred CCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 158 CQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 158 C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
||+.|. .=+ .....||.|+.+....
T Consensus 73 CG~~F~-----~~~--~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 73 CGFVFK-----AEI--NIPSRCPKCKSEWIEE 97 (105)
T ss_dssp TCCBCC-----CCS--SCCSSCSSSCCCCBCC
T ss_pred CcCeec-----ccC--CCCCCCcCCCCCccCC
Confidence 999992 112 4567899999877544
No 137
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.21 E-value=7.9 Score=24.49 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=29.1
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|+.|-..+...+.++.. -+..||..|. .|-.|..++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a----~~~~~H~~CF----------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY----KGSSWHETCF----------ICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE----TTEEEETTTT----------CCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEE----CcCeecccCC----------cccccCCccCCC
Confidence 45799999988875544333 4668888873 677888777544
No 138
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=52.89 E-value=5.4 Score=28.12 Aligned_cols=12 Identities=25% Similarity=0.866 Sum_probs=10.6
Q ss_pred cccHhHHHHHHh
Q 041895 161 LYHHECIWRWLR 172 (206)
Q Consensus 161 ~FH~~CI~~WL~ 172 (206)
-||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999994
No 139
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=52.34 E-value=5.5 Score=28.10 Aligned_cols=12 Identities=25% Similarity=0.863 Sum_probs=10.6
Q ss_pred cccHhHHHHHHh
Q 041895 161 LYHHECIWRWLR 172 (206)
Q Consensus 161 ~FH~~CI~~WL~ 172 (206)
-||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999994
No 140
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.45 E-value=11 Score=24.57 Aligned_cols=49 Identities=22% Similarity=0.404 Sum_probs=31.6
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHh-------hCCCCccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR-------ELRNYSCPVCRKNF 186 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~-------~~~~~sCPvCR~~l 186 (206)
..-| ||......+..+.--. |..=||..|+.--.. ....-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~---C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR---CEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS---SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeCC---CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4556 8988876444343333 999999999852110 13567899997643
No 141
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=51.36 E-value=1 Score=29.31 Aligned_cols=50 Identities=22% Similarity=0.392 Sum_probs=27.8
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh------CCCCccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE------LRNYSCPVCRK 184 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~------~~~~sCPvCR~ 184 (206)
+...| ||-.....+..+.--. ..|..=||..|+.---.. ..+-.||.||.
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~-~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCED-QRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSC-TTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCEEe-ECCCCcCCCCEEEECC-CCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 33457 8977665554332210 128888999997310000 01356999975
No 142
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=50.87 E-value=3.8 Score=22.09 Aligned_cols=14 Identities=21% Similarity=0.745 Sum_probs=10.6
Q ss_pred CCccccccccccCC
Q 041895 176 NYSCPVCRKNFAHG 189 (206)
Q Consensus 176 ~~sCPvCR~~l~~~ 189 (206)
+..||+|+..++..
T Consensus 3 k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 3 DFCCPKCQYQAPDM 16 (28)
T ss_dssp CEECTTSSCEESSH
T ss_pred cccCccccccCcCh
Confidence 45799999877643
No 143
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.79 E-value=7.7 Score=24.97 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=31.5
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
....|+.|-+.+..++.+ .. -+..||..|. .|-.|..+|...
T Consensus 8 ~~~~C~~C~~~I~~~~~v--~a---~~~~~H~~CF----------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKV--SS---LGKDWHKFCL----------KCERCSKTLTPG 49 (76)
T ss_dssp CCCBCTTTCCBCCTTTEE--EE---TTEEEETTTC----------BCSSSCCBCCTT
T ss_pred CCCCCcCCCCEeECCeEE--EE---CCeEeeCCCC----------CCCCCCCccCCC
Confidence 456899999999876644 33 5678999883 688898888643
No 144
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=50.05 E-value=9.7 Score=24.76 Aligned_cols=42 Identities=21% Similarity=0.624 Sum_probs=30.7
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|..|-..+..++.++. . =+..||..|. .|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a---~~~~~H~~CF----------~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-Y---KGTVWHKDCF----------TCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-C---SSCEEETTTC----------CCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEE-E---CccccccccC----------chhhCCCccCCC
Confidence 4689999999987665433 2 5678998883 688888887654
No 145
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=49.93 E-value=8.1 Score=27.51 Aligned_cols=49 Identities=20% Similarity=0.410 Sum_probs=28.7
Q ss_pred ccccccccccccccccCCceeec-CCCCCCCcccHhHHHHHHhh--CCCCccccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATS-LNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKNF 186 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~L-p~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~l 186 (206)
...+..|.||.+ .|+.+.-- +. |...||..|+. |.. ...=.||-|.-.+
T Consensus 12 ~~~~~~C~~C~~---~G~ll~CD~~~--Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~ 63 (107)
T 4gne_A 12 QMHEDYCFQCGD---GGELVMCDKKD--CPKAYHLLCLN--LTQPPYGKWECPWHQCDE 63 (107)
T ss_dssp CSSCSSCTTTCC---CSEEEECCSTT--CCCEECTGGGT--CSSCCSSCCCCGGGBCTT
T ss_pred CCCCCCCCcCCC---CCcEeEECCCC--CCcccccccCc--CCcCCCCCEECCCCCCCc
Confidence 456678999984 24322222 02 88999999987 521 1122477665443
No 146
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=49.82 E-value=8.9 Score=29.33 Aligned_cols=50 Identities=18% Similarity=0.366 Sum_probs=32.1
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--------CCCCccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--------LRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--------~~~~sCPvCR~ 184 (206)
+..+.-|.||-+. ..+..-.+..|...|+..||..++.. ...=+|=+|.-
T Consensus 76 DG~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 4556789999864 23333321139999999999998832 11225888853
No 147
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=49.70 E-value=8.6 Score=25.03 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=25.3
Q ss_pred ccccccccccccccccCCceeecCCCCC-CCcccHhHHHH
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPC-QFLYHHECIWR 169 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C-~H~FH~~CI~~ 169 (206)
.++..-|.||.++ ..++.+. | +-+||..|..+
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g---CdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG---CDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT---TTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC---CCCceehHHHHHH
Confidence 4567789999987 2477787 9 78999999765
No 148
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.32 E-value=7.1 Score=27.00 Aligned_cols=48 Identities=23% Similarity=0.517 Sum_probs=26.8
Q ss_pred ccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhh--CCCCcccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
+..-| ||..... +..+..- ++-|. .-||..|+. |.. ..+-.||.|+..
T Consensus 35 e~~yC-iC~~~~~-g~MI~CD-~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSY-GEMIGCD-NPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCC-SCCCCCS-CSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCC-CCEeEec-CCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 44556 9988653 4322111 11143 569999997 421 123469999764
No 149
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.95 E-value=7.3 Score=25.02 Aligned_cols=44 Identities=27% Similarity=0.624 Sum_probs=31.2
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.....|+-|-..+...+.++.. -+..||..|. .|-.|..++...
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a----~~~~~H~~CF----------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS----NGELYHEQCF----------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE----TTEEECTTTC----------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEEe----CccEeccccC----------eECCCCCCCCCC
Confidence 3457899999998765544333 4678998883 678888877654
No 150
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=48.67 E-value=10 Score=33.09 Aligned_cols=50 Identities=22% Similarity=0.444 Sum_probs=32.8
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--------CCCCccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--------LRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--------~~~~sCPvCR~ 184 (206)
+..+.-|.||-+. ++ +..-.+..|...||..||..++.. ...=+|=+|.-
T Consensus 90 DG~~~yCr~C~~G---g~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 90 DGYQSYCSICCSG---ET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp SSSBCSCTTTCCC---SS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred CCCcccceEcCCC---Ce-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 4556789999874 32 333321239999999999998821 12336888854
No 151
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=46.25 E-value=4 Score=25.78 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=25.7
Q ss_pred ccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhh--CCCCccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRE--LRNYSCPVCRK 184 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~--~~~~sCPvCR~ 184 (206)
+..-| ||.... .+. .+.--++-|. .-||..|+. |.. ...-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34456 898864 233 2221121133 579999997 521 12346998864
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.89 E-value=12 Score=24.61 Aligned_cols=43 Identities=19% Similarity=0.587 Sum_probs=30.9
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGT 190 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~ 190 (206)
....|..|-..+...+.+. . -+..||..|. .|-.|...|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~--a---~~~~wH~~CF----------~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC--V---NGHFFHRSCF----------RCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC--B---TTBCCBTTTC----------BCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEE--E---CCCeeCCCcC----------EEcCCCCCcCCCc
Confidence 4568999999987665442 3 5678999883 6778887775543
No 153
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.98 E-value=16 Score=23.45 Aligned_cols=40 Identities=20% Similarity=0.496 Sum_probs=28.1
Q ss_pred ccccccccccccc--CCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 134 EEECAICLKKFEN--IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 134 ~~~C~ICle~~~~--~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
...|+.|-..+.. +... +.. -+..||..|. .|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~-~~a---~~~~wH~~CF----------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKF-ICF---QDSQWHSECF----------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCE-EEE---TTEEEEGGGC----------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCcee-EEE---CCcccCcccC----------ChhhCCCcCC
Confidence 4589999998875 3333 233 5678999883 6788887775
No 154
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=42.54 E-value=8.4 Score=20.21 Aligned_cols=11 Identities=45% Similarity=0.833 Sum_probs=9.1
Q ss_pred cchhhHHHHhh
Q 041895 4 TYGYQVRRMLT 14 (206)
Q Consensus 4 ~~~~~~~~~~~ 14 (206)
.||-|+|||-.
T Consensus 10 rYGReLRRMSD 20 (27)
T 2bzw_B 10 RYGRELRRMSD 20 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHHHHhH
Confidence 48999999954
No 155
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=41.32 E-value=16 Score=27.56 Aligned_cols=49 Identities=20% Similarity=0.456 Sum_probs=30.9
Q ss_pred cccccccccccccc--cCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccc
Q 041895 132 EEEEECAICLKKFE--NIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRK 184 (206)
Q Consensus 132 ~~~~~C~ICle~~~--~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~ 184 (206)
..+..|.+|..+|. .+......- |.|.+|..|- .|+.....=.|=+|+.
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~---C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLE---CSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTT---TCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCC---CCchhhcccc-cccCCCCcEeeHHHHH
Confidence 35689999999864 233333333 9999999997 2442112224777765
No 156
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=41.31 E-value=2.9 Score=26.56 Aligned_cols=38 Identities=21% Similarity=0.534 Sum_probs=25.0
Q ss_pred cccccccccccccCCceeecCCCC---CCCcccHhHHHHHHh
Q 041895 134 EEECAICLKKFENIDNEATSLNCP---CQFLYHHECIWRWLR 172 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~---C~H~FH~~CI~~WL~ 172 (206)
...|+-|...++..+---.+. +. |++.|+..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmt-C~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMV-CRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSS-CCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEE-ECCCCcCCEEeeCcCCCccc
Confidence 357888888877654322232 22 778888888888773
No 157
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=40.52 E-value=13 Score=24.29 Aligned_cols=49 Identities=20% Similarity=0.445 Sum_probs=29.9
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhh---CCCCccccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE---LRNYSCPVCRKNF 186 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~---~~~~sCPvCR~~l 186 (206)
.--||-..+..+...+.--. |.-=||..|+.---.. ...-.||.|+...
T Consensus 11 ~yCiC~~~~~~~~~MI~Cd~--C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~ 62 (75)
T 3kqi_A 11 VYCVCRLPYDVTRFMIECDA--CKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTH 62 (75)
T ss_dssp EETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHH
T ss_pred eEEECCCcCCCCCCEEEcCC--CCCCEecccccccccccCCCCEEECCCCcccC
Confidence 34489887754333323323 9999999999632210 1345799997653
No 158
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=40.49 E-value=6.2 Score=35.52 Aligned_cols=51 Identities=18% Similarity=0.389 Sum_probs=30.7
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh---CCCCccccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE---LRNYSCPVCRKNF 186 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~---~~~~sCPvCR~~l 186 (206)
+..-| ||...+..+...+..-. |.-=||..|+.---.. ...-.||.|+..-
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~--C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDI--CKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTT--TCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccC--CCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 33445 99988753333323333 9999999999531110 1235799998643
No 159
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=40.49 E-value=5.8 Score=24.98 Aligned_cols=47 Identities=23% Similarity=0.469 Sum_probs=26.0
Q ss_pred ccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhh--CCCCccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRE--LRNYSCPVCRK 184 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~--~~~~sCPvCR~ 184 (206)
+..-| ||.... .++.+ .--++-|. .-||..|+. |.. ...-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~mi-~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGEMI-GCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCCee-EeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44456 998864 34322 11111144 589999997 421 12346999864
No 160
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=40.48 E-value=12 Score=26.65 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=18.9
Q ss_pred ccccccccccccCCceeecCCCCCCCcccHhHHHHHH
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWL 171 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL 171 (206)
-.|..|-..+..++... .. =+..||..|..+.+
T Consensus 37 F~C~~C~~~L~~g~~f~-~~---~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 37 FKCAACQKHFSVGDRYL-LI---NSDIVCEQDIYEWT 69 (123)
T ss_dssp CBCTTTCCBCCTTCEEE-EC---SSSEEEGGGHHHHH
T ss_pred CccccCCCCCCCCCcEE-ee---CCEEEcHHHhHHHh
Confidence 46666766664444332 22 35567777776666
No 161
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.25 E-value=15 Score=24.74 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=28.7
Q ss_pred ccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
-.|..|-..+.... . ... =+..|+..|..+ .-...|..|..+|.+.
T Consensus 34 F~C~~C~~~L~~~~-~-~~~---~g~~yC~~cy~~----~~~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 34 FRCAKCLHPLANET-F-VAK---DNKILCNKCTTR----EDSPKCKGCFKAIVAG 79 (101)
T ss_dssp CCCSSSCCCTTSSC-C-EEE---TTEEECHHHHTT----CCCCBCSSSCCBCCSS
T ss_pred CcccccCCCCCcCe-e-ECc---CCEEEChhHhhh----hcCCccccCCCccccC
Confidence 46777777774322 2 122 356787777644 4466899998888754
No 162
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.35 E-value=9.8 Score=26.74 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=25.2
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
.+..||+|..+++.......-.. |.-.| ....-||-|..++.
T Consensus 31 M~~~CP~Cq~eL~~~g~~~hC~~--C~~~f-----------~~~a~CPdC~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNGHARCRS--CGEFI-----------EMKALCPDCHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBEEEETTEEEETT--TCCEE-----------EEEEECTTTCSBCE
T ss_pred ccccCccCCCcceecCCEEECcc--ccchh-----------hccccCcchhhHHH
Confidence 44799999998864322221111 44333 45667999988774
No 163
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.52 E-value=18 Score=23.44 Aligned_cols=42 Identities=21% Similarity=0.498 Sum_probs=29.0
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|+.|-..+..++.++. . =+..||..|. .|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a---~~~~~H~~CF----------~C~~C~~~L~~~ 56 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELF-Y---EDRHFHEGCF----------RCCRCQRSLADE 56 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCC-C---SSCCCBTTTS----------BCTTTCCBCSSC
T ss_pred CCcCccCCCccccCcEEEE-e---CCccccccCC----------eecCCCCccCCC
Confidence 3589999999885443322 2 4678998883 688888887643
No 164
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.39 E-value=19 Score=22.21 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=28.6
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
...|+.|-..+. ++ . +.. -+..||..|. .|-.|..++..
T Consensus 5 ~~~C~~C~~~I~-~~-~-~~a---~~~~~H~~CF----------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GR-V-VNA---MGKQWHVEHF----------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SC-E-ECC---TTSBEETTTC----------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ce-E-EEE---CccccccCcC----------EECCCCCCCCC
Confidence 468999999987 43 2 333 6778999883 68889888864
No 165
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.38 E-value=17 Score=22.76 Aligned_cols=40 Identities=25% Similarity=0.649 Sum_probs=27.2
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
....|..|-..+.. +. +.. -+..||..|. .|-.|..+|..
T Consensus 4 ~~~~C~~C~~~I~~-~~--~~a---~~~~~H~~CF----------~C~~C~~~L~~ 43 (70)
T 2d8z_A 4 GSSGCVQCKKPITT-GG--VTY---REQPWHKECF----------VCTACRKQLSG 43 (70)
T ss_dssp CCCBCSSSCCBCCS-SE--EES---SSSEEETTTS----------BCSSSCCBCTT
T ss_pred CCCCCcccCCeecc-ce--EEE---CccccCCCCC----------ccCCCCCcCCc
Confidence 34578888888864 22 233 5678888873 68888887753
No 166
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=37.56 E-value=8 Score=25.20 Aligned_cols=41 Identities=24% Similarity=0.540 Sum_probs=28.2
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|..|-..+..++.+ .. -+..||..|. .|-.|..++...
T Consensus 7 ~~~C~~C~~~I~~~~~~--~a---~~~~~H~~CF----------~C~~C~~~L~~~ 47 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEV--QC---DGRSFHRCCF----------LCMVCRKNLDST 47 (81)
T ss_dssp -CBCSSSCCBCSSTTEE--EE---TTEEEESSSE----------ECSSSCCEECSS
T ss_pred CCcCcCcCccccCceeE--Ee---CCcccccccC----------ccCCCCCCCCCC
Confidence 46799999988766533 33 5678888873 677888777554
No 167
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.43 E-value=14 Score=23.08 Aligned_cols=43 Identities=26% Similarity=0.627 Sum_probs=31.3
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
....|.-|-..+..++.++. . =+..||..|. .|-.|...+...
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~---~~~~~H~~CF----------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-S---NGELYHEQCF----------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-E---TTEEEETTTS----------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCceEEE-e---CcCeeCcCCC----------cccCCCCCCCCC
Confidence 44689999999987665433 2 5678998884 688888877654
No 168
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.36 E-value=14 Score=24.13 Aligned_cols=40 Identities=18% Similarity=0.450 Sum_probs=29.9
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
....|.-|-..+..++.+.. -+..||..|. .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a-----~~~~wH~~CF----------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA-----LDKQWHVSCF----------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE-----TTEEECTTTC----------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE-----CCcccccccC----------CcCcCCCCcC
Confidence 45689999999987664432 4568999883 7888988875
No 169
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=36.06 E-value=13 Score=23.84 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=18.6
Q ss_pred ccccccccccccCCceeecCCCCCCCcccH-hHHHHHHhhCCCCcccccc
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHH-ECIWRWLRELRNYSCPVCR 183 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~-~CI~~WL~~~~~~sCPvCR 183 (206)
-.|..|-..+..+. .. .. =+.+|+. .|..+-+ ...|-.|.
T Consensus 28 F~C~~C~~~L~~~~-~~-~~---~g~~yC~~~cy~~~f----~~~C~~C~ 68 (76)
T 1iml_A 28 LKCEKCGKTLTSGG-HA-EH---EGKPYCNHPCYSAMF----GPKGFGRG 68 (76)
T ss_dssp CBCTTTCCBCCTTT-EE-EE---TTEEEETTTHHHHHS----SCCCSSCC
T ss_pred CCccccCccCCCCc-eE-Cc---CCeEeeCHHHHHHHh----CccCCCcC
Confidence 35666666555432 11 12 3445665 4654433 33455553
No 170
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.73 E-value=21 Score=22.33 Aligned_cols=41 Identities=20% Similarity=0.422 Sum_probs=26.9
Q ss_pred ccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
....|..|-+.+.. + . +.. -+..||.+|. .|-.|..+|...
T Consensus 4 ~~~~C~~C~~~I~~-~-~-~~a---~~~~~H~~CF----------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 4 GSSGCHQCGEFIIG-R-V-IKA---MNNSWHPECF----------RCDLCQEVLADI 44 (70)
T ss_dssp CSSBCSSSCCBCCS-C-C-EEE---TTEEECTTTS----------BCSSSCCBCSSS
T ss_pred CCCcCccCCCEecc-e-E-EEE---CcccccccCC----------EeCCCCCcCCCC
Confidence 34678888888763 3 2 222 5667888873 677787777654
No 171
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.77 E-value=20 Score=23.81 Aligned_cols=41 Identities=24% Similarity=0.613 Sum_probs=28.3
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|.-|-..+...+.+ .. -+..||..|. .|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a---~~~~~H~~CF----------~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA---NQQVFHISCF----------RCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC---SSSEEETTTC----------BCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeE--EE---CCCEECCCCC----------eeCCCCCCCCCC
Confidence 46899999888765533 33 6678888883 577777766554
No 172
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=34.71 E-value=2.9 Score=28.00 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=12.6
Q ss_pred CCCcccHhHHHHHH
Q 041895 158 CQFLYHHECIWRWL 171 (206)
Q Consensus 158 C~H~FH~~CI~~WL 171 (206)
|++.|+..|-..|=
T Consensus 56 C~~~FC~~C~~~wH 69 (80)
T 2jmo_A 56 CGFAFCRECKEAYH 69 (80)
T ss_dssp CSCCEETTTTEECC
T ss_pred CCCeeccccCcccc
Confidence 99999999988875
No 173
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=34.50 E-value=15 Score=23.64 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=30.8
Q ss_pred ccccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhh-CCCCccccccc
Q 041895 131 EEEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE-LRNYSCPVCRK 184 (206)
Q Consensus 131 ~~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~-~~~~sCPvCR~ 184 (206)
..+...| ||......+..+.--. |..=||..|+.---.. ...-.||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd~---C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECNE---CHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECTT---TCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECCC---CCccccccccCcCcccCCCcEECCCCCC
Confidence 3455678 9988765333333333 9999999998632100 13446888864
No 174
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.34 E-value=15 Score=23.79 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=31.9
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHh--hCCCCccccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR--ELRNYSCPVCRKNF 186 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~--~~~~~sCPvCR~~l 186 (206)
.+...| ||-.....+...+.--. |..=||..|+.---. ....-.||.|+..-
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~--C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDG--CGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSS--SCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CcceEe-eCCCccCCCCcEEECCC--CCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 345578 79887655543323223 999999999864210 02345699997643
No 175
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=34.19 E-value=29 Score=22.74 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=31.6
Q ss_pred cccccccccccccccCCceeec--CCCCCCCcccHhHHHHHHhh-------CCCCccccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATS--LNCPCQFLYHHECIWRWLRE-------LRNYSCPVCRKNF 186 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~L--p~~~C~H~FH~~CI~~WL~~-------~~~~sCPvCR~~l 186 (206)
.+...| ||-.....+..+.-- - |..=||..|+.---.. ...-.||.|+..-
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~---C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPR---CHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTT---TCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCcc---CCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 345677 898875555433333 3 9999999998531100 1345799997643
No 176
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=32.63 E-value=19 Score=24.30 Aligned_cols=13 Identities=23% Similarity=0.641 Sum_probs=8.1
Q ss_pred ccccccccccccC
Q 041895 135 EECAICLKKFENI 147 (206)
Q Consensus 135 ~~C~ICle~~~~~ 147 (206)
..|++|..++...
T Consensus 3 ~~CP~C~~~l~~~ 15 (81)
T 2jrp_A 3 ITCPVCHHALERN 15 (81)
T ss_dssp CCCSSSCSCCEEC
T ss_pred CCCCCCCCccccC
Confidence 4577777666543
No 177
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.16 E-value=23 Score=23.39 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=30.5
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.....|.-|-+.+.. . . +.. -+..||..|. .|-.|...|...
T Consensus 23 ~~~~~C~~C~~~I~~-~-~-~~a---~~~~~H~~CF----------~C~~C~~~L~~~ 64 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG-A-V-VKA---RDKYRHPECF----------VCADCNLNLKQK 64 (89)
T ss_dssp CSCCBCTTTCCBCCS-C-C-EES---SSCEECTTTC----------CCSSSCCCTTTS
T ss_pred CcCCCcccCCCEecc-c-E-EEE---CCceECccCC----------EecCCCCCCCCC
Confidence 345689999999875 2 2 233 6789999883 688898888654
No 178
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.94 E-value=19 Score=23.21 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=28.8
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
.....|.-|-+.+.. + . +.. -+..||..|. .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~-~-~-~~a---~~~~~H~~CF----------~C~~C~~~L~ 52 (79)
T 1x62_A 13 QKLPMCDKCGTGIVG-V-F-VKL---RDRHRHPECY----------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCCSSSCCCCCS-S-C-EEC---SSCEECTTTT----------SCSSSCCCHH
T ss_pred CCCCccccCCCCccC-c-E-EEE---CcceeCcCcC----------eeCCCCCCCC
Confidence 345689999999875 2 2 333 6789999883 6888887774
No 179
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=31.87 E-value=17 Score=25.39 Aligned_cols=47 Identities=21% Similarity=0.448 Sum_probs=28.3
Q ss_pred cccccccccccCCceeecCCCCCCCcccHhHHHHHHhh--CCCCcccccccc
Q 041895 136 ECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRE--LRNYSCPVCRKN 185 (206)
Q Consensus 136 ~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~--~~~~sCPvCR~~ 185 (206)
.|.||...-.... +..-.. |...||..|+..=|.. +..-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~-ll~Cd~--C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSK-MLVCDT--CDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTT-EEECSS--SCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCC-eeECCC--CCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 5777776543333 333334 9999999999754411 123358888654
No 180
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.78 E-value=5.9 Score=25.24 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=26.1
Q ss_pred ccccccccccccccCCceeecCCCCCC-CcccHhHHHHHHhh--CCCCccccccc
Q 041895 133 EEEECAICLKKFENIDNEATSLNCPCQ-FLYHHECIWRWLRE--LRNYSCPVCRK 184 (206)
Q Consensus 133 ~~~~C~ICle~~~~~~~~~~Lp~~~C~-H~FH~~CI~~WL~~--~~~~sCPvCR~ 184 (206)
+..-| ||.... .+..+ .--++.|. .-||..|+. |.. ...-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~MI-~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGEMI-GCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSEEE-ECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCCee-eeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34456 998863 34322 22221133 789999997 321 12346999965
No 181
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.30 E-value=23 Score=22.55 Aligned_cols=42 Identities=21% Similarity=0.457 Sum_probs=29.6
Q ss_pred ccccccccccccc---CCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFEN---IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~---~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|+-|-..+.. +...+ .. =+..||..|. .|-.|..++...
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~-~a---~~~~~H~~CF----------~C~~C~~~L~~~ 59 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVV-AY---EGQSWHDYCF----------HCKKCSVNLANK 59 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEE-EE---TTEEEETTTC----------BCSSSCCBCTTS
T ss_pred CccCcccCCcccCCCCCceeE-EE---CcceeCcccC----------EehhcCCCCCCC
Confidence 4689999999885 33332 22 4678999883 788998888643
No 182
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.15 E-value=24 Score=21.91 Aligned_cols=38 Identities=24% Similarity=0.597 Sum_probs=24.6
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
...|.-|-..+.. +.+ .. -+..||..|. .|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a---~~~~~H~~CF----------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGI--TY---QDQPWHADCF----------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCE--EE---TTEEECTTTT----------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceE--EE---CccccccCcC----------EECCCCCCCC
Confidence 4578888887753 322 22 4567887773 6777877775
No 183
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=29.11 E-value=47 Score=22.54 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=13.1
Q ss_pred CCCCcccHhHHHHHHhhCCCCccccc
Q 041895 157 PCQFLYHHECIWRWLRELRNYSCPVC 182 (206)
Q Consensus 157 ~C~H~FH~~CI~~WL~~~~~~sCPvC 182 (206)
+|..-||+.|. -.|.+|
T Consensus 21 ~C~~CyCKkCc---------~HCq~C 37 (86)
T 1tac_A 21 ASNRAHAKKSA---------YHSQVA 37 (86)
T ss_dssp CSSCSSTTTTT---------TTCCCS
T ss_pred CCCCceecchh---------hhhhHH
Confidence 39999999883 368888
No 184
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.45 E-value=27 Score=22.61 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=30.0
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.....|.-|-..+. +..+ .. -+..||..|. .|-.|..+|...
T Consensus 13 ~~~~~C~~C~~~I~-~~~v--~a---~~~~~H~~CF----------~C~~C~~~L~~~ 54 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPL--IF---KNDPYHPDHF----------NCANCGKELTAD 54 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCC--CC---SSSCCCTTTS----------BCSSSCCBCCTT
T ss_pred cCCCCCccCCCEec-ceEE--EE---CcceeCCCCC----------EeCCCCCccCCC
Confidence 34568999999987 3322 23 6778998883 788898888654
No 185
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.27 E-value=34 Score=21.72 Aligned_cols=38 Identities=26% Similarity=0.514 Sum_probs=24.3
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCcccccccccc
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFA 187 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~ 187 (206)
...|+-|-..+.. . . +.. -+..||.+|. .|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~-~-v~a---~~~~wH~~CF----------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITG-R-V-LEA---GEKHYHPSCA----------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSS-C-C-BCC---SSCCBCTTTS----------CCSSSCCCCC
T ss_pred cCCcccCCCEecC-e-e-EEe---CCCCCCCCcC----------EeCCCCCCCC
Confidence 4578888887764 2 2 223 6678888773 5666766665
No 186
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.89 E-value=27 Score=22.32 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=27.1
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
...|+.|-+.+... . +.. =+..||..|. .|-.|..+|..
T Consensus 15 ~~~C~~C~~~I~~~--~-v~a---~~~~~H~~CF----------~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQG--G-VTY---RDQPWHRECL----------VCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSC--C-EES---SSSEECTTTC----------BCSSSCCBCTT
T ss_pred CCcCCCCCCEecCc--E-EEE---CCchhhhhhC----------CcccCCCcCCC
Confidence 35788898888653 2 233 5678888873 68888888753
No 187
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.74 E-value=26 Score=23.22 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=30.1
Q ss_pred cccccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 132 EEEEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 132 ~~~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.....|..|-..+. ++ . +.. -+..||..|. .|-.|...|...
T Consensus 23 ~~~~~C~~C~~~I~-~~-~-v~a---~~~~~H~~CF----------~C~~C~~~L~~~ 64 (90)
T 2dar_A 23 KRTPMCAHCNQVIR-GP-F-LVA---LGKSWHPEEF----------NCAHCKNTMAYI 64 (90)
T ss_dssp TCCCBBSSSCCBCC-SC-E-EEE---TTEEECTTTC----------BCSSSCCBCSSS
T ss_pred CCCCCCccCCCEec-ce-E-EEE---CCccccccCC----------ccCCCCCCCCCC
Confidence 34578999999985 33 2 234 6789999883 788898888643
No 188
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=27.49 E-value=15 Score=23.95 Aligned_cols=12 Identities=33% Similarity=0.938 Sum_probs=9.6
Q ss_pred CCcccccccccc
Q 041895 176 NYSCPVCRKNFA 187 (206)
Q Consensus 176 ~~sCPvCR~~l~ 187 (206)
...||+|.+++.
T Consensus 9 ~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 9 TVNCPTCGKTVV 20 (68)
T ss_dssp EEECTTTCCEEE
T ss_pred cCcCCCCCCccc
Confidence 457999999875
No 189
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=26.58 E-value=16 Score=19.22 Aligned_cols=13 Identities=31% Similarity=0.915 Sum_probs=9.3
Q ss_pred CCccccccccccC
Q 041895 176 NYSCPVCRKNFAH 188 (206)
Q Consensus 176 ~~sCPvCR~~l~~ 188 (206)
+-.||+|...++.
T Consensus 6 ~vqcpvcqq~mpa 18 (29)
T 3vhs_A 6 QVQCPVCQQMMPA 18 (29)
T ss_dssp EEECTTTCCEEEG
T ss_pred eeeChHHHHhCcH
Confidence 3469999886654
No 190
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=26.52 E-value=11 Score=24.59 Aligned_cols=16 Identities=25% Similarity=0.760 Sum_probs=10.2
Q ss_pred CCCCccccccccccCC
Q 041895 174 LRNYSCPVCRKNFAHG 189 (206)
Q Consensus 174 ~~~~sCPvCR~~l~~~ 189 (206)
..--.||+|+.++...
T Consensus 6 LeiL~CP~ck~~L~~~ 21 (69)
T 2pk7_A 6 LDILACPICKGPLKLS 21 (69)
T ss_dssp GGTCCCTTTCCCCEEC
T ss_pred HhheeCCCCCCcCeEe
Confidence 4445788888776543
No 191
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.39 E-value=49 Score=23.21 Aligned_cols=51 Identities=8% Similarity=0.039 Sum_probs=35.1
Q ss_pred cccccccccccc-CCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCCCC
Q 041895 135 EECAICLKKFEN-IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHGTE 191 (206)
Q Consensus 135 ~~C~ICle~~~~-~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~~~ 191 (206)
-.|..|-..+.+ +... ... =+..||..|..+-+ .....|-.|..+|.....
T Consensus 33 F~C~~C~~~L~~~~~~~-~~~---~g~~yC~~cy~~~f--~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSS-YTK---SGMILCRNDYIRLF--GNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECC-EEE---TTEEECHHHHHHHH--CCCCSSSCSSCCSCCEES
T ss_pred CCcCCCCCcccccCCeE-EEE---CCeeecHHHHHHHc--CCCCccccCCCCcCchhe
Confidence 478888888753 2222 233 56789999998877 554589999998876443
No 192
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.39 E-value=52 Score=23.09 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=29.7
Q ss_pred cccccccccccc-CCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 135 EECAICLKKFEN-IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 135 ~~C~ICle~~~~-~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
-.|..|-..+.. +.... .- =|..||..|-.+-+ .....|..|...|..
T Consensus 30 F~C~~C~~~L~~~~~~~~-~~---~g~~yC~~~y~~~~--~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLY-YK---LGRKLCRRDYLRLF--GQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEE-EE---TTEEECHHHHHHHH--CCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEE-EE---CCEEeecCchhhhC--CCccChhhcCCccCc
Confidence 577777777753 23222 22 35678888877755 333378888777754
No 193
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=25.49 E-value=30 Score=30.70 Aligned_cols=52 Identities=17% Similarity=0.345 Sum_probs=31.4
Q ss_pred ccccccccccccCCceeecCCCCCCCcccHhHHHHHHh---hCCCCccccccccccC
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLR---ELRNYSCPVCRKNFAH 188 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~---~~~~~sCPvCR~~l~~ 188 (206)
....||...+..+...+..-. |.-=||..|+.---. ....-.||.|+....+
T Consensus 5 ~~yCiC~~~~d~~~~MIqCD~--C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~ 59 (447)
T 3kv4_A 5 PVYCLCRLPYDVTRFMIECDM--CQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGP 59 (447)
T ss_dssp CEETTTTEECCTTSCEEECTT--TCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCC
T ss_pred CeEEeCCCcCCCCCCeEEcCC--CCcccccccCCcCcccccCCCEEECCCCccccCC
Confidence 345599888753333322223 999999999952110 0134579999875433
No 194
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=24.97 E-value=11 Score=24.50 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=13.4
Q ss_pred HHHhhCCCCccccccccccCC
Q 041895 169 RWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 169 ~WL~~~~~~sCPvCR~~l~~~ 189 (206)
.|| ..--.||+|+.++...
T Consensus 5 ~~L--LeiL~CP~ck~~L~~~ 23 (67)
T 2jny_A 5 PQL--LEVLACPKDKGPLRYL 23 (67)
T ss_dssp GGG--TCCCBCTTTCCBCEEE
T ss_pred HHH--HHHhCCCCCCCcCeEe
Confidence 455 5566899999887544
No 195
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=24.37 E-value=31 Score=21.28 Aligned_cols=41 Identities=22% Similarity=0.528 Sum_probs=28.3
Q ss_pred ccccccccccccCCceeecCCCCCCCccc--HhHHHHHHhhCCCCccccccccccCC
Q 041895 135 EECAICLKKFENIDNEATSLNCPCQFLYH--HECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 135 ~~C~ICle~~~~~~~~~~Lp~~~C~H~FH--~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
..|+-|-..+..++..+ .. -+..|| .+| + .|-.|+.++...
T Consensus 3 ~~C~~C~~~I~~~~~~v-~a---~~~~wH~~~~C----F------~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRV-TY---NNFSWHASTEC----F------LCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEE-EE---TTEEEETTTTT----S------BCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEE-EE---CCCccCCCCCC----E------ECCCCCCcCCCC
Confidence 46888999888643332 22 567899 888 3 788888887543
No 196
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.09 E-value=41 Score=25.05 Aligned_cols=11 Identities=27% Similarity=0.625 Sum_probs=5.5
Q ss_pred ccccccccccc
Q 041895 136 ECAICLKKFEN 146 (206)
Q Consensus 136 ~C~ICle~~~~ 146 (206)
.|..|-..+..
T Consensus 67 ~C~~C~~~I~~ 77 (169)
T 2rgt_A 67 KCAACQLGIPP 77 (169)
T ss_dssp BCTTTCCBCCT
T ss_pred cccccccccCC
Confidence 45555554443
No 197
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.08 E-value=37 Score=21.82 Aligned_cols=40 Identities=33% Similarity=0.630 Sum_probs=27.1
Q ss_pred cccccccccccccCCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccCC
Q 041895 134 EEECAICLKKFENIDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAHG 189 (206)
Q Consensus 134 ~~~C~ICle~~~~~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~~ 189 (206)
...|+.|-..+. ++ ++ .. -+..||..|. .|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~-~~-~v-~a---~~~~wH~~CF----------~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIE-GE-VV-SA---LGKTYHPDCF----------VCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCC-SC-CE-EE---TTEEECTTTS----------SCSSSCCCCCSS
T ss_pred CCcCccccCEec-cc-eE-EE---CCceeCccCC----------ccccCCCCCCCC
Confidence 358999999887 33 22 23 5678998883 577777776543
No 198
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.51 E-value=54 Score=24.89 Aligned_cols=48 Identities=10% Similarity=0.284 Sum_probs=23.3
Q ss_pred cccccccccccc-CCceeecCCCCCCCcccHhHHHHHHhhCCCCccccccccccC
Q 041895 135 EECAICLKKFEN-IDNEATSLNCPCQFLYHHECIWRWLRELRNYSCPVCRKNFAH 188 (206)
Q Consensus 135 ~~C~ICle~~~~-~~~~~~Lp~~~C~H~FH~~CI~~WL~~~~~~sCPvCR~~l~~ 188 (206)
-.|..|-..+.. +.... .. =+..||..|..+-+ .....|..|...|..
T Consensus 33 F~C~~C~~~L~~~g~~~~-~~---~g~~yC~~cy~~~~--~~~~~C~~C~~~I~~ 81 (188)
T 1rut_X 33 LKCSSCQAQLGDIGTSSY-TK---SGMILCRNDYIRLF--GNSGACSACGQSIPA 81 (188)
T ss_dssp CBCTTTCCBHHHHCSEEE-EE---TTEEECHHHHHHHH--SCCEECTTTCCEECT
T ss_pred cccCCCCcccccCCceEE-Ee---CCcccccccccccc--ccCCccccCCCcccc
Confidence 356666555543 22221 11 34556666655544 222256666665543
No 199
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=21.98 E-value=6 Score=26.70 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=17.6
Q ss_pred CCCcccHhHHHHHHhhCC--CCccccccc
Q 041895 158 CQFLYHHECIWRWLRELR--NYSCPVCRK 184 (206)
Q Consensus 158 C~H~FH~~CI~~WL~~~~--~~sCPvCR~ 184 (206)
|++.||..|-..|= +. ..+|..-++
T Consensus 49 C~~~FC~~C~~~w~--~~H~~~sC~~~~~ 75 (86)
T 2ct7_A 49 CHQTFCVRCKRQWE--EQHRGRSCEDFQN 75 (86)
T ss_dssp TCCEECSSSCSBCC--TTTTTSCHHHHHH
T ss_pred CCCccccccCCchh--hcCCCCChHHHHH
Confidence 99999999998883 22 335655544
No 200
>2jui_A PLNE; ampiphilic alpha helix, toxin; NMR {Lactobacillus plantarum}
Probab=20.55 E-value=43 Score=17.97 Aligned_cols=14 Identities=36% Similarity=0.885 Sum_probs=10.9
Q ss_pred CCccchhhHHHHhh
Q 041895 1 SGYTYGYQVRRMLT 14 (206)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (206)
.||.+|-.||..+.
T Consensus 4 ggynfgksvrhvid 17 (33)
T 2jui_A 4 GGYNFGKSVRHVVD 17 (33)
T ss_dssp CSCCSSHHHHHHHH
T ss_pred cccccchhHHHHHH
Confidence 38999999987654
No 201
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=20.31 E-value=53 Score=24.94 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=13.6
Q ss_pred CCCcccHhHHHHHHhhCCCCcccccccc
Q 041895 158 CQFLYHHECIWRWLRELRNYSCPVCRKN 185 (206)
Q Consensus 158 C~H~FH~~CI~~WL~~~~~~sCPvCR~~ 185 (206)
|||++-. .....||+|..+
T Consensus 144 CG~i~~~---------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 144 CGYTAVD---------EAPEYCPVCGAP 162 (170)
T ss_dssp TCCEEES---------CCCSBCTTTCCB
T ss_pred CCCeeCC---------CCCCCCCCCCCC
Confidence 9998852 445599999753
Done!