Query 041897
Match_columns 118
No_of_seqs 98 out of 100
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041897.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041897hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 2.4E-42 5.2E-47 251.5 9.3 104 3-111 7-117 (118)
2 PF05617 Prolamin_like: Prolam 99.8 3.1E-21 6.7E-26 126.2 4.1 63 39-101 1-70 (70)
3 PLN00214 putative protein; Pro 77.0 2.1 4.6E-05 31.6 2.3 34 48-83 45-78 (115)
4 cd01960 nsLTP1 nsLTP1: Non-spe 51.6 12 0.00025 25.0 1.9 36 39-79 2-37 (89)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 41.3 26 0.00056 21.5 2.2 22 58-79 7-28 (63)
6 smart00499 AAI Plant lipid tra 40.3 26 0.00056 21.3 2.1 40 40-84 1-43 (79)
7 KOG2675 Adenylate cyclase-asso 35.4 25 0.00054 31.6 1.8 17 100-116 228-244 (480)
8 cd04660 nsLTP_like nsLTP_like: 30.0 49 0.0011 21.4 2.2 38 44-85 5-43 (73)
9 PF10731 Anophelin: Thrombin i 25.7 46 0.00099 22.3 1.4 21 3-23 5-25 (65)
10 PF00234 Tryp_alpha_amyl: Prot 25.4 32 0.00069 22.4 0.7 26 57-82 20-45 (90)
11 PF09585 Lin0512_fam: Conserve 22.3 34 0.00073 25.1 0.3 31 59-91 13-44 (113)
12 cd01959 nsLTP2 nsLTP2: Non-spe 20.1 62 0.0013 21.1 1.2 34 45-85 4-37 (66)
No 1
>PLN00213 predicted protein; Provisional
Probab=100.00 E-value=2.4e-42 Score=251.52 Aligned_cols=104 Identities=40% Similarity=0.852 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHhhcCCCCCCCCCCcC-------CCCCCCCCchhhhhhccCCcchHHHHHHHHhhcccCccchhhhHHHH
Q 041897 3 QALLVATCIAMLVQSGQLPQTPGLAI-------PPGWGSGDVLKCWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFV 75 (118)
Q Consensus 3 ~~ll~~~ci~~~v~~gl~p~~p~~~~-------~pg~~~~d~~~Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~ 75 (118)
.+|||++||+++||+|| ||+|..|. +||+ | |+.||||||++++||+.||++|+++|||++||++|||||+
T Consensus 7 ~~ll~v~cIvvsVna~l-pqf~~~fp~~~p~~~~pg~-p-d~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~ 83 (118)
T PLN00213 7 FLLLAVLCIIVSVNAQL-PQFPAQLPFLFPFQLIPGL-P-DITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFL 83 (118)
T ss_pred HHHHHHHHHHheeccCC-CCCCCCCCCCCCccCCCCC-c-cHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHH
Confidence 47899999999999999 77665542 4776 4 9999999999999999999999999999999999999999
Q ss_pred hhhcCcccccCCCCCCChHHHHhhhhcccCCCCCCC
Q 041897 76 AIDAGCFHLMFPWNPFFPQLLNDFCARIEGGTRGVP 111 (118)
Q Consensus 76 ~i~~~CwP~mFp~~Pf~p~lLK~~Cs~~~~~~~p~p 111 (118)
+.| +|||+| |++||||++||++|++++.+++|.|
T Consensus 84 ~~d-nCwP~~-P~~P~fPp~LK~~Cs~i~~~~~~~~ 117 (118)
T PLN00213 84 DAD-NCIPKI-PFIPFFPPMLKEQCSRVAGATPPIP 117 (118)
T ss_pred hhh-ccccCC-cCCCccchHHHHHHhcccCCCCCCC
Confidence 965 999995 9999999999999999999888764
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.83 E-value=3.1e-21 Score=126.16 Aligned_cols=63 Identities=44% Similarity=0.900 Sum_probs=60.9
Q ss_pred hhhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhhcCcccc---cCCCCCCChH----HHHhhhh
Q 041897 39 KCWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDAGCFHL---MFPWNPFFPQ----LLNDFCA 101 (118)
Q Consensus 39 ~Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~~CwP~---mFp~~Pf~p~----lLK~~Cs 101 (118)
|||++++++++|++||+.+|++|++.+||++||++|++++++||++ ||++.|+|++ .||++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLRDLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhHHHHHhhcC
Confidence 7999999999999999999999997899999999999999999999 9999999999 9999996
No 3
>PLN00214 putative protein; Provisional
Probab=77.05 E-value=2.1 Score=31.60 Aligned_cols=34 Identities=21% Similarity=0.580 Sum_probs=28.9
Q ss_pred cchHHHHHHHHhhcccCccchhhhHHHHhhhcCccc
Q 041897 48 EGCVTSIFSSIFSLNFNSIAPACCKAFVAIDAGCFH 83 (118)
Q Consensus 48 ~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~~CwP 83 (118)
+-|..||+..++..+ ....+||+-+.....+|--
T Consensus 45 ~KCa~EI~a~i~~N~--t~s~~CC~~LVk~GK~CH~ 78 (115)
T PLN00214 45 PKCALDIIAVVFENG--TLIDPCCNDLVKEGKVCHD 78 (115)
T ss_pred HhhHHHHHHHHHcCC--CCchHHHHHHHHHhhHHHH
Confidence 789999999999333 3589999999999999965
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=51.64 E-value=12 Score=25.01 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=24.8
Q ss_pred hhhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhhc
Q 041897 39 KCWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDA 79 (118)
Q Consensus 39 ~Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~ 79 (118)
+|=+.+.++..|.. |++|....-+++||.+++.+.+
T Consensus 2 ~C~~v~~~l~~C~~-----y~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 2 SCGQVTSLLAPCLG-----YLTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred CHHHHHhhHHhHHH-----HHhCCCCCCChHHhhhhHHHhh
Confidence 35556666777763 3445446788999999998753
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=41.26 E-value=26 Score=21.49 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=16.4
Q ss_pred HhhcccCccchhhhHHHHhhhc
Q 041897 58 IFSLNFNSIAPACCKAFVAIDA 79 (118)
Q Consensus 58 ~~~G~~~~Igp~CC~Ai~~i~~ 79 (118)
+++|....-..+||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 3445545788999999999854
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=40.34 E-value=26 Score=21.33 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=25.1
Q ss_pred hhhhccCCcchHHHHHHHHhhcc--cCccchhhhHHHHhh-hcCcccc
Q 041897 40 CWSSLANTEGCVTSIFSSIFSLN--FNSIAPACCKAFVAI-DAGCFHL 84 (118)
Q Consensus 40 Cwssl~~v~gC~~EI~~s~~~G~--~~~Igp~CC~Ai~~i-~~~CwP~ 84 (118)
|...+.+..+|..-+ ++. -..-...||..++.+ +..|.=.
T Consensus 1 C~~~~~~~~~c~~~~-----~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSYL-----TGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHHH-----cCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 334444545665432 222 236778999999999 8888754
No 7
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=35.40 E-value=25 Score=31.56 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=9.3
Q ss_pred hhcccCCCCCCCCCCCC
Q 041897 100 CARIEGGTRGVPPSPPL 116 (118)
Q Consensus 100 Cs~~~~~~~p~p~~p~~ 116 (118)
|++.+++.|||||++|.
T Consensus 228 ~~~s~~g~PPPPPP~PP 244 (480)
T KOG2675|consen 228 KAASAPGAPPPPPPAPP 244 (480)
T ss_pred CcccCCCCCCCCCCCCC
Confidence 66666555555554443
No 8
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=30.05 E-value=49 Score=21.40 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=23.4
Q ss_pred ccCCcchHHHHHHHHhhccc-CccchhhhHHHHhhhcCccccc
Q 041897 44 LANTEGCVTSIFSSIFSLNF-NSIAPACCKAFVAIDAGCFHLM 85 (118)
Q Consensus 44 l~~v~gC~~EI~~s~~~G~~-~~Igp~CC~Ai~~i~~~CwP~m 85 (118)
+..+..|.. ++..|.. ..-..+||.+|+..+..|.=..
T Consensus 5 ~~~L~~C~~----yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~ 43 (73)
T cd04660 5 LDLLAECQP----YVTGPNPPPPPSRECCAALRRADLPCLCRY 43 (73)
T ss_pred HHHHHHHHH----HHcCCCCCCCCCHHHHHHHHcCCcCCEeec
Confidence 344556654 3333431 1467789999998877776443
No 9
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=25.66 E-value=46 Score=22.33 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCC
Q 041897 3 QALLVATCIAMLVQSGQLPQT 23 (118)
Q Consensus 3 ~~ll~~~ci~~~v~~gl~p~~ 23 (118)
.++++.||++..+-.|-|||+
T Consensus 5 l~vialLC~aLva~vQ~APQY 25 (65)
T PF10731_consen 5 LIVIALLCVALVAIVQSAPQY 25 (65)
T ss_pred hhHHHHHHHHHHHHHhcCccc
Confidence 367778898777766666774
No 10
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=25.41 E-value=32 Score=22.42 Aligned_cols=26 Identities=15% Similarity=0.453 Sum_probs=19.9
Q ss_pred HHhhcccCccchhhhHHHHhhhcCcc
Q 041897 57 SIFSLNFNSIAPACCKAFVAIDAGCF 82 (118)
Q Consensus 57 s~~~G~~~~Igp~CC~Ai~~i~~~Cw 82 (118)
.+.+|........||..++.++..|.
T Consensus 20 ~~~~~~~~~~~~~CC~~L~~l~~~C~ 45 (90)
T PF00234_consen 20 PYLQGGCQQPSQQCCQQLRQLDPQCR 45 (90)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHhHHHHHHhHHhh
Confidence 35666666788899999999977764
No 11
>PF09585 Lin0512_fam: Conserved hypothetical protein (Lin0512_fam); InterPro: IPR011719 This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N terminus.
Probab=22.32 E-value=34 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.3
Q ss_pred hhcccCccchhhhHHHH-hhhcCcccccCCCCCC
Q 041897 59 FSLNFNSIAPACCKAFV-AIDAGCFHLMFPWNPF 91 (118)
Q Consensus 59 ~~G~~~~Igp~CC~Ai~-~i~~~CwP~mFp~~Pf 91 (118)
+.|| +.-+++++|++ .|.++|.|.||-..|+
T Consensus 13 lhGq--D~TkAA~RAv~DAI~~nslp~l~~~~~~ 44 (113)
T PF09585_consen 13 LHGQ--DYTKAAVRAVRDAISHNSLPGLFEILGL 44 (113)
T ss_pred ccCC--cHHHHHHHHHHHHHhhcchHHHHHHcCC
Confidence 3455 66788999997 7899999988776666
No 12
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=20.09 E-value=62 Score=21.10 Aligned_cols=34 Identities=18% Similarity=0.479 Sum_probs=24.0
Q ss_pred cCCcchHHHHHHHHhhcccCccchhhhHHHHhhhcCccccc
Q 041897 45 ANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDAGCFHLM 85 (118)
Q Consensus 45 ~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~~CwP~m 85 (118)
+++..|...|. .| +.-..+||.++++. +.|.=..
T Consensus 4 ~~L~~C~~ai~----~~--~~Ps~~CC~~Lk~~-~~CLC~y 37 (66)
T cd01959 4 TQLSPCLPAIL----GG--SPPSAACCAKLKEQ-QSCLCQY 37 (66)
T ss_pred hhcccCHHHHh----CC--CCCCHHHHHHHhcC-CCCeeee
Confidence 45667776553 34 37889999999985 4887655
Done!