Query 041897
Match_columns 118
No_of_seqs 98 out of 100
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bwo_A NS-LTP1, nonspecific li 18.0 62 0.0021 20.9 1.9 33 40-78 3-35 (90)
2 1afh_A Maize nonspecific lipid 16.0 68 0.0023 20.8 1.7 34 40-78 4-37 (93)
3 3c8l_A FTSZ-like protein of un 14.0 52 0.0018 23.4 0.7 27 65-91 21-48 (122)
4 2rkn_A DIR1 protein, AT5G48485 13.5 45 0.0015 20.8 0.2 42 39-84 4-45 (77)
5 2lvf_A 2S albumin; allergen, c 12.3 78 0.0027 21.7 1.2 37 46-82 17-61 (114)
6 1t12_A LTP 1, nonspecific lipi 12.1 91 0.0031 20.2 1.5 34 39-79 3-36 (91)
7 1n89_A Lipid transfer protein; 11.7 1.5E+02 0.0052 18.0 2.3 18 65-83 19-36 (67)
8 2p58_C Putative type III secre 11.3 1.5E+02 0.0051 20.9 2.4 42 37-86 29-72 (116)
9 1siy_A LTP 1, NS-LTP1, nonspec 11.2 1.5E+02 0.0051 19.0 2.3 32 40-77 3-34 (91)
10 2uwj_G Type III export protein 11.1 1.5E+02 0.0051 20.9 2.3 42 37-86 28-71 (115)
No 1
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=18.00 E-value=62 Score=20.94 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=21.4
Q ss_pred hhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhh
Q 041897 40 CWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAID 78 (118)
Q Consensus 40 Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~ 78 (118)
|=+.+.++..|..- ++|.-. -.++||.+++.+.
T Consensus 3 C~~v~~~L~pCl~y-----~~~~~~-Ps~~CC~~lk~l~ 35 (90)
T 1bwo_A 3 CGHVDSLVRPCLSY-----VQGGPG-PSGQCCDGVKNLH 35 (90)
T ss_dssp HHHHHHHHGGGHHH-----HTTCSC-CCHHHHHHHHHHH
T ss_pred HHHHHHhhcccHHH-----HcCCCC-CCHHHhHHHHHHH
Confidence 44455556666643 344433 7889999999875
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=16.02 E-value=68 Score=20.83 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=21.9
Q ss_pred hhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhh
Q 041897 40 CWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAID 78 (118)
Q Consensus 40 Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~ 78 (118)
|=+.+.++..|..- ++|....-.++||.+++.+.
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~ 37 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLN 37 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHH
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHH
Confidence 44555556666643 34443456678999999985
No 3
>3c8l_A FTSZ-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.22A {Nostoc punctiforme}
Probab=14.00 E-value=52 Score=23.44 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=20.8
Q ss_pred ccchhhhHHHH-hhhcCcccccCCCCCC
Q 041897 65 SIAPACCKAFV-AIDAGCFHLMFPWNPF 91 (118)
Q Consensus 65 ~Igp~CC~Ai~-~i~~~CwP~mFp~~Pf 91 (118)
+.-++..+|++ .|.++|.|.+|-..++
T Consensus 21 D~TkAA~RAvrDAI~~nslp~~~~~~g~ 48 (122)
T 3c8l_A 21 EPTIAASRAVRNAIAHNALPGVWEVAGL 48 (122)
T ss_dssp CHHHHHHHHHHHHHTTCCCSSHHHHHTC
T ss_pred cHHHHHHHHHHHHHhhhcchhHHHHCCC
Confidence 56678888888 7889999988754444
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=13.46 E-value=45 Score=20.84 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=24.3
Q ss_pred hhhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhhcCcccc
Q 041897 39 KCWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDAGCFHL 84 (118)
Q Consensus 39 ~Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~~CwP~ 84 (118)
.|=+.+.++..|.. ++..|....-.++||.+++..+..|.=.
T Consensus 4 ~C~~~~~~L~pC~~----yv~~~~~~~Ps~~CC~~lk~~~~~ClC~ 45 (77)
T 2rkn_A 4 LCGMSQDELNECKP----AVSKENPTSPSQPCCTALQHADFACLCG 45 (77)
T ss_dssp BTTBCHHHHHHHGG----GGBSSSCCCCCHHHHHHHTTCCHHHHHT
T ss_pred hHHhHHHhHhhCHH----HHcCCCCCCCCHHHHHHHHhcCcCCcCc
Confidence 34444444445543 2233333467889999999766666543
No 5
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=12.34 E-value=78 Score=21.67 Aligned_cols=37 Identities=14% Similarity=0.441 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHhhcccCccch--------hhhHHHHhhhcCcc
Q 041897 46 NTEGCVTSIFSSIFSLNFNSIAP--------ACCKAFVAIDAGCF 82 (118)
Q Consensus 46 ~v~gC~~EI~~s~~~G~~~~Igp--------~CC~Ai~~i~~~Cw 82 (118)
++.+|-.=|.+....+.....+. .||+-++.++..|-
T Consensus 17 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv~~~Cr 61 (114)
T 2lvf_A 17 MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCR 61 (114)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHCCcCcc
Confidence 46788887777766666544443 49999999998884
No 6
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=12.11 E-value=91 Score=20.21 Aligned_cols=34 Identities=18% Similarity=0.387 Sum_probs=21.4
Q ss_pred hhhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhhc
Q 041897 39 KCWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDA 79 (118)
Q Consensus 39 ~Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~ 79 (118)
+|=+.+.++..|.. +++|... -. +||.+++.+..
T Consensus 3 ~C~~v~~~L~pCl~-----y~~~~~~-P~-~CC~gv~~l~~ 36 (91)
T 1t12_A 3 TCGQVTSNLAPCLA-----YLRNTGP-LG-RCCGGVKALVN 36 (91)
T ss_dssp CHHHHHHHTHHHHH-----HHTTSSC-CT-THHHHHHHHHH
T ss_pred ChHHHHHhccCcHH-----HHcCCCC-hH-HHHHHHHHHHh
Confidence 35555556666664 3445443 45 89999998764
No 7
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=11.67 E-value=1.5e+02 Score=17.99 Aligned_cols=18 Identities=33% Similarity=0.791 Sum_probs=14.4
Q ss_pred ccchhhhHHHHhhhcCccc
Q 041897 65 SIAPACCKAFVAIDAGCFH 83 (118)
Q Consensus 65 ~Igp~CC~Ai~~i~~~CwP 83 (118)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 6889999999975 66754
No 8
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=11.33 E-value=1.5e+02 Score=20.94 Aligned_cols=42 Identities=12% Similarity=0.063 Sum_probs=30.9
Q ss_pred chhhhhhccCCcchHHHHHHH-Hhh-cccCccchhhhHHHHhhhcCcccccC
Q 041897 37 VLKCWSSLANTEGCVTSIFSS-IFS-LNFNSIAPACCKAFVAIDAGCFHLMF 86 (118)
Q Consensus 37 ~~~Cwssl~~v~gC~~EI~~s-~~~-G~~~~Igp~CC~Ai~~i~~~CwP~mF 86 (118)
+-+|..+.-+ +.|+.=|..+ ..| |++ =.|..-.+..|||.+-
T Consensus 29 IAdwL~~~~~-~E~v~lIR~sSLmNrG~Y-------q~Al~l~~~~c~pdle 72 (116)
T 2p58_C 29 IAEWLHLKGE-EEAVQLIRLSSLMNRGDY-------ASALQQGNKLAYPDLE 72 (116)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHTTCH-------HHHHHHHTTSCCGGGH
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHcchhH-------HHHHHhcCCCCCchHH
Confidence 3567777777 8888888544 444 555 5788888999999873
No 9
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=11.23 E-value=1.5e+02 Score=19.03 Aligned_cols=32 Identities=22% Similarity=0.520 Sum_probs=19.6
Q ss_pred hhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhh
Q 041897 40 CWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAI 77 (118)
Q Consensus 40 Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i 77 (118)
|=+.+.++..|..- ++|.- .-.++||.+++.+
T Consensus 3 C~~v~~~L~pCl~y-----v~~~~-~Ps~~CC~~lk~l 34 (91)
T 1siy_A 3 CGQVQGNLAQCIGF-----LQKGG-VVPPSCCTGVKNI 34 (91)
T ss_dssp TTTTHHHHHHHHHH-----HTSCS-CCCHHHHHHHHHH
T ss_pred HHHHHHhccCcHHH-----HhCCC-CCcHHHHHHHHHH
Confidence 33444445556542 33433 3778999999987
No 10
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=11.12 E-value=1.5e+02 Score=20.95 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=30.8
Q ss_pred chhhhhhccCCcchHHHHHHH-Hhh-cccCccchhhhHHHHhhhcCcccccC
Q 041897 37 VLKCWSSLANTEGCVTSIFSS-IFS-LNFNSIAPACCKAFVAIDAGCFHLMF 86 (118)
Q Consensus 37 ~~~Cwssl~~v~gC~~EI~~s-~~~-G~~~~Igp~CC~Ai~~i~~~CwP~mF 86 (118)
+-+|..+.-+ +.|+.=|..+ ..| |++ =.|..-.+..|||.+-
T Consensus 28 IAdwL~~~~~-~E~v~lIR~sSLmNrG~Y-------q~Al~l~~~~c~pdle 71 (115)
T 2uwj_G 28 IAEWLERLGQ-DEAARLIRISSLANQGRY-------QEALAFAHGNPWPALE 71 (115)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHTTCH-------HHHHGGGTTCCCGGGH
T ss_pred HHHHHHhCCc-HHHHHHHHHHHHHcchhH-------HHHHHhcCCCCCchHH
Confidence 3567777777 8888888544 444 555 5788888999999873
Done!