Query 041897
Match_columns 118
No_of_seqs 98 out of 100
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 20:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041897.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041897hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 37.5 7.6 0.00056 24.0 1.9 36 39-79 3-38 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 23.5 18 0.0013 22.2 1.8 34 40-79 3-36 (91)
3 d1k8rb_ d.15.1.5 (B:) Protein 13.6 36 0.0026 21.6 1.5 16 44-59 14-29 (95)
4 d1dsqa_ g.40.1.1 (A:) Nucleic 11.2 37 0.0027 16.7 0.7 13 59-71 7-19 (26)
5 d1tuka1 a.52.1.1 (A:1-67) Non- 10.7 82 0.006 18.6 2.4 41 45-93 5-45 (67)
6 d1tmqb_ a.52.1.2 (B:) Trypsin/ 9.7 1.1E+02 0.008 19.7 3.0 27 77-103 2-31 (117)
7 d2bwba1 a.5.2.1 (A:328-371) DS 6.7 1E+02 0.0076 16.6 1.5 27 35-61 18-44 (44)
8 d1hssa_ a.52.1.2 (A:) 0.19 alp 6.1 1.1E+02 0.0078 20.0 1.5 35 47-82 13-49 (120)
9 d1cmra_ g.3.7.2 (A:) Charybdot 5.2 67 0.0049 16.3 -0.0 7 37-43 4-10 (31)
10 d1knya1 a.24.16.1 (A:126-253) 4.7 2.5E+02 0.018 18.3 2.8 33 43-75 72-106 (128)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=37.53 E-value=7.6 Score=24.05 Aligned_cols=36 Identities=14% Similarity=0.344 Sum_probs=24.1
Q ss_pred hhhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhhc
Q 041897 39 KCWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDA 79 (118)
Q Consensus 39 ~Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~ 79 (118)
+|=+.+.++-.|. .|++|....-.+.||.+++.+.+
T Consensus 3 ~C~~v~~~l~pCl-----~Yltg~~~~Ps~~CC~gv~~l~~ 38 (93)
T d1fk5a_ 3 SCGQVASAIAPCI-----SYARGQGSGPSAGCCSGVRSLNN 38 (93)
T ss_dssp CHHHHHHHHGGGH-----HHHTTCSSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHhhhhH-----HHHhCCCCCCCCchhHHHHHHHH
Confidence 3445555556665 34566655678899999998763
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=23.47 E-value=18 Score=22.16 Aligned_cols=34 Identities=15% Similarity=0.358 Sum_probs=22.9
Q ss_pred hhhhccCCcchHHHHHHHHhhcccCccchhhhHHHHhhhc
Q 041897 40 CWSSLANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDA 79 (118)
Q Consensus 40 Cwssl~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~ 79 (118)
|=+.+.++-.|.. |++|. +...+.||.+++.+..
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~-~~P~~~CC~gv~~L~~ 36 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGG-PGPSGECCNGVRDLHN 36 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTC-SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH-----HHcCC-CCCCcchhhhHHHHHH
Confidence 4455555566653 45565 4789999999988763
No 3
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=13.62 E-value=36 Score=21.63 Aligned_cols=16 Identities=6% Similarity=0.123 Sum_probs=12.5
Q ss_pred ccCCcchHHHHHHHHh
Q 041897 44 LANTEGCVTSIFSSIF 59 (118)
Q Consensus 44 l~~v~gC~~EI~~s~~ 59 (118)
..|+.||.+||+.-++
T Consensus 14 ~vni~gC~~ai~~~~L 29 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIAL 29 (95)
T ss_dssp EEECCSCHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHH
Confidence 6789999999865544
No 4
>d1dsqa_ g.40.1.1 (A:) Nucleic acid binding protein p14 {Mouse mammary tumor virus [TaxId: 11757]}
Probab=11.21 E-value=37 Score=16.73 Aligned_cols=13 Identities=15% Similarity=0.074 Sum_probs=9.6
Q ss_pred hhcccCccchhhh
Q 041897 59 FSLNFNSIAPACC 71 (118)
Q Consensus 59 ~~G~~~~Igp~CC 71 (118)
.-|++++|..+|=
T Consensus 7 scgktghikkdck 19 (26)
T d1dsqa_ 7 SCGKTGHIKRDCK 19 (26)
T ss_dssp TTCCBSSCTTTTT
T ss_pred ecCCcccchhhhh
Confidence 4578888888873
No 5
>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}
Probab=10.69 E-value=82 Score=18.61 Aligned_cols=41 Identities=24% Similarity=0.541 Sum_probs=26.0
Q ss_pred cCCcchHHHHHHHHhhcccCccchhhhHHHHhhhcCcccccCCCCCCCh
Q 041897 45 ANTEGCVTSIFSSIFSLNFNSIAPACCKAFVAIDAGCFHLMFPWNPFFP 93 (118)
Q Consensus 45 ~~v~gC~~EI~~s~~~G~~~~Igp~CC~Ai~~i~~~CwP~mFp~~Pf~p 93 (118)
+++..|..+| ++|. .-..+||.-+++ ..-|.=.. -.||-+-
T Consensus 5 ~~L~~C~~Ai----~~g~--~PS~~CC~kLke-Q~~ClC~Y-~kdP~~~ 45 (67)
T d1tuka1 5 SQLAVCASAI----LSGA--KPSGECCGNLRA-QQGCFCQY-AKDPTYG 45 (67)
T ss_dssp GGGGGGHHHH----HHCC--CCCHHHHHHHHH-HGGGHHHH-TTCTTTH
T ss_pred hhccccHHHH----hcCC--CCcHHHHHHHHh-cCCcccee-cCCccHH
Confidence 4677788766 3343 678889988887 45676432 3445443
No 6
>d1tmqb_ a.52.1.2 (B:) Trypsin/alpha-amylase inhibitor RBI {Eleusine coracana, seeds [TaxId: 4511]}
Probab=9.68 E-value=1.1e+02 Score=19.69 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=20.2
Q ss_pred hhcCccccc-CCCCCCCh--HHHHhhhhcc
Q 041897 77 IDAGCFHLM-FPWNPFFP--QLLNDFCARI 103 (118)
Q Consensus 77 i~~~CwP~m-Fp~~Pf~p--~lLK~~Cs~~ 103 (118)
..+.|+|-| ||.||+-. .++|..|...
T Consensus 2 ~g~~C~Pg~~~p~~pL~~CR~Yv~~q~~g~ 31 (117)
T d1tmqb_ 2 VGTSCIPGMAIPHNPLDSCRWYVSTRTCGV 31 (117)
T ss_dssp GGGGCSBTTTBCSSTTTTHHHHHHHHHHSC
T ss_pred CCCcCCCCcccCCCccHHHHHHHHHHhhcC
Confidence 357899965 68888876 8888887654
No 7
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.70 E-value=1e+02 Score=16.58 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCchhhhhhccCCcchHHHHHHHHhhc
Q 041897 35 GDVLKCWSSLANTEGCVTSIFSSIFSL 61 (118)
Q Consensus 35 ~d~~~Cwssl~~v~gC~~EI~~s~~~G 61 (118)
.|-.++..+|....|-+..=++.+++|
T Consensus 18 ~d~~~Ni~AL~~t~GdV~~Aie~Ll~g 44 (44)
T d2bwba1 18 FDFDRNVAALRRSGGSVQGALDSLLNG 44 (44)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHhCc
Confidence 677888888888888888777777765
No 8
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=6.08 E-value=1.1e+02 Score=19.99 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=24.2
Q ss_pred CcchHHHHHHHHhhccc--CccchhhhHHHHhhhcCcc
Q 041897 47 TEGCVTSIFSSIFSLNF--NSIAPACCKAFVAIDAGCF 82 (118)
Q Consensus 47 v~gC~~EI~~s~~~G~~--~~Igp~CC~Ai~~i~~~Cw 82 (118)
+++|-..+.+- ..|.- ..+-..||+-+..|.+.|.
T Consensus 13 L~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CR 49 (120)
T d1hssa_ 13 LPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCR 49 (120)
T ss_dssp CTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTH
T ss_pred cHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccc
Confidence 66888665433 44431 2455889999999999886
No 9
>d1cmra_ g.3.7.2 (A:) Charybdotoxin {Scorpion (Leiurus quinquestriatus hebraeus) [TaxId: 6884]}
Probab=5.20 E-value=67 Score=16.34 Aligned_cols=7 Identities=43% Similarity=1.189 Sum_probs=5.1
Q ss_pred chhhhhh
Q 041897 37 VLKCWSS 43 (118)
Q Consensus 37 ~~~Cwss 43 (118)
..+|||-
T Consensus 4 skecwsv 10 (31)
T d1cmra_ 4 SKECWSV 10 (31)
T ss_dssp GGGSSSS
T ss_pred cHHHHHH
Confidence 4789974
No 10
>d1knya1 a.24.16.1 (A:126-253) Kanamycin nucleotidyltransferase (KNTase), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=4.71 E-value=2.5e+02 Score=18.34 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=22.8
Q ss_pred hccCCcchHHHHHHHHhhcccCccc--hhhhHHHH
Q 041897 43 SLANTEGCVTSIFSSIFSLNFNSIA--PACCKAFV 75 (118)
Q Consensus 43 sl~~v~gC~~EI~~s~~~G~~~~Ig--p~CC~Ai~ 75 (118)
++-..+.=++|+.+.+.+|+..... ..||+++-
T Consensus 72 ~lp~~p~g~d~l~~~vm~G~L~~~~~i~~~CE~~w 106 (128)
T d1knya1 72 KQSDLPSGYDHLCQFVMSGQLSDSEKLLESLENFW 106 (128)
T ss_dssp TSSSCCTTHHHHHHHHHHTBCCCHHHHHHHHHHHH
T ss_pred cCCCCChhHHHHHHHHHcccccchHHHHHHHHHHH
Confidence 3444555678999999999975443 35777764
Done!