BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041898
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 193/343 (56%), Gaps = 31/343 (9%)
Query: 29 IRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRN 88
++ YW SE P+ +I S+LF+HL CAFA +NS T + ++S ++ F FT TV+ RN
Sbjct: 5 VKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRN 64
Query: 89 PSVVTLLSIWGG----AIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTN 144
PSV TLLSI GG ++SM + ++RKSFI SS+ +AR GFHGLDL P T
Sbjct: 65 PSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATE 124
Query: 145 ITKLGTLFDEWRA----------ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194
+T GTL EWR+ + +LLL + SV YP+ ++ +LDW++++
Sbjct: 125 MTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMA 184
Query: 195 FDYYLPTRDNFTGAHSALYSSSRWFNTND---------------TVLGLPYHGYAWTLVN 239
+D+Y P TG +AL+ S + D VLG PY+GYAW L N
Sbjct: 185 YDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTN 244
Query: 240 PDENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 299
+ + +P TG AI+ DGS+G+ I+ FI D GA +VYN + V ++ A T W+ +D
Sbjct: 245 ANSHSYYAPTTGAAISPDGSIGYGQIRKFIVD--NGATTVYNSTVVGDYCYAGTNWIGYD 302
Query: 300 GVETIRSKVSFAKEKGLLGYHAFQLSNDDKWELYSAEKQPADV 342
++I +KV +AK++GLLGY ++ + DD L A Q D
Sbjct: 303 DNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQAWDA 345
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 193/342 (56%), Gaps = 34/342 (9%)
Query: 29 IRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRN 88
++GGYW S L + I S LF+HL CAFA +N + I+ ++ F FT+TV+ +N
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 89 PSVVTLLSIWGGAIFSS----MINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTN 144
PSV T LSI GG S+ M Q ++RKSFI SS+ +AR GFHGLDL P +
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAAD 123
Query: 145 ITKLGTLFDEWR----------AESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194
+T LGTL +EWR + LLL + P + ++YP++S+ RNLDWI+++
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 195 FDYYLPT-RDNFTGAHSALY------SSSRWFN--------TNDTVLGLPYHGYAWTLVN 239
+D+Y P + T +H+ L+ S S N T VLG+P++GYAW LVN
Sbjct: 184 YDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 240 PDENPVGSPATGPA---ITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWV 296
+ + + +PA G + DGS+ + I+ +I + A +VYN + V ++ + + W+
Sbjct: 244 ANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSNWI 301
Query: 297 NFDGVETIRSKVSFAKEKGLLGYHAFQLSNDDKWELYSAEKQ 338
++D +T+R+KV++ K +GLLGY A+ ++ D W L Q
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 214 bits (545), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 125/342 (36%), Positives = 193/342 (56%), Gaps = 34/342 (9%)
Query: 29 IRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRN 88
++GGYW S L + I S LF+HL CAFA +N + I+ ++ F FT+TV+ +N
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 89 PSVVTLLSIWGGAIFSS----MINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTN 144
PSV T LSI GG S+ M Q ++RKSFI SS+ +AR GFHGLDL P +
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAAD 123
Query: 145 ITKLGTLFDEWR----------AESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194
+T LGTL +EWR + LLL + P + ++YP++S+ RNLDWI+++
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 195 FDYYLPT-RDNFTGAHSALY------SSSRWFN--------TNDTVLGLPYHGYAWTLVN 239
+D+Y P + T +H+ L+ S S N T VLG+P++GYAW LVN
Sbjct: 184 YDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 240 PDENPVGSPATGPA---ITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWV 296
+ + + +PA G + DGS+ + I+ +I + A +VYN + V ++ + + W+
Sbjct: 244 ANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSNWI 301
Query: 297 NFDGVETIRSKVSFAKEKGLLGYHAFQLSNDDKWELYSAEKQ 338
++D +T+R+KV++ K +GLLGY A+ ++ D W L Q
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQ 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 159/344 (46%), Gaps = 51/344 (14%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKH 86
NW + Y + ++ +L +HL+ +AF + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLI--YAFAGMTNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--- 139
NP + TLL+I +G F+ M+ ++NR++F+ S++ R F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -----DKGTNITKLGTLFDEWRAESQL---LLVMTSHHLPALES---VSYPLDSMQRNLD 188
DK T + L + ++ E+Q ++ S +PA ++ Y +D + +NLD
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLD 184
Query: 189 WIHVLNFDYY------------LPTRDNFTGAHSAL---YSSSRWFN----TNDTVLGLP 229
+++++ +D++ L R +GA ++L + +W + +LG+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVG-FKFIKGFIRDYGY----GAASVYNHSY 284
+G ++TL + + VG+PATG G+ G F G + Y GA
Sbjct: 245 TYGRSFTLASSSDTRVGAPATG-----SGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQ 299
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + WV FD VE+ ++KVS+ K+KGL G + L DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 51/344 (14%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKH 86
NW + Y + ++ +L +HL+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--- 139
NP + TLL+I +G F+ M+ ++NR++F+ S++ R F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -----DKGTNITKLGTLFDEWRAESQL---LLVMTSHHLPALES---VSYPLDSMQRNLD 188
DK T + L + ++ E+Q ++ S +PA ++ Y +D + +NLD
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLD 184
Query: 189 WIHVLNFDYY------------LPTRDNFTGAHSAL---YSSSRWFN----TNDTVLGLP 229
+++++ +D++ L R +GA ++L + +W + +LG+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVG-FKFIKGFIRDYGY----GAASVYNHSY 284
+G ++TL + + VG+PATG G+ G F G + Y GA
Sbjct: 245 TYGRSFTLASSSDTRVGAPATG-----SGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQ 299
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + WV FD VE+ ++KVS+ K+KGL G + L DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 51/344 (14%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKH 86
NW + Y + ++ +L +HL+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--- 139
NP + TLL+I +G F+ M+ ++NR++F+ S++ R F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -----DKGTNITKLGTLFDEWRAESQL---LLVMTSHHLPALES---VSYPLDSMQRNLD 188
DK T + L + ++ E+Q ++ S +PA ++ Y +D + +NLD
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLD 184
Query: 189 WIHVLNFDYY------------LPTRDNFTGAHSAL---YSSSRWFN----TNDTVLGLP 229
+++++ +D++ L R +GA ++L + +W + +LG+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVG-FKFIKGFIRDYGY----GAASVYNHSY 284
+G ++TL + + VG+PATG G+ G F G + Y GA
Sbjct: 245 TYGRSFTLASSSDTRVGAPATG-----SGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQ 299
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + WV FD VE+ ++KVS+ K+KGL G + L DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 51/344 (14%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKH 86
NW + Y + ++ +L +HL+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--- 139
NP + TLL+I +G F+ M+ ++NR++F+ S++ R F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -----DKGTNITKLGTLFDEWRAESQL---LLVMTSHHLPALES---VSYPLDSMQRNLD 188
DK T + L + ++ E+Q ++ S +PA ++ Y +D + +NLD
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLD 184
Query: 189 WIHVLNFDYY------------LPTRDNFTGAHSAL---YSSSRWFN----TNDTVLGLP 229
+++++ +D++ L R +GA ++L + +W + +LG+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLILGMP 244
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVG-FKFIKGFIRDYGY----GAASVYNHSY 284
+G ++TL + + VG+PATG G+ G F G + Y GA
Sbjct: 245 TYGRSFTLASSSDTRVGAPATG-----SGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQ 299
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + WV FD VE+ ++KVS+ K+KGL G + L DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 160/344 (46%), Gaps = 51/344 (14%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKH 86
NW + Y + ++ +L +HL+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--- 139
NP + TLL+I +G F+ M+ ++NR++F+ S++ R F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -----DKGTNITKLGTLFDEWRAESQL---LLVMTSHHLPALES---VSYPLDSMQRNLD 188
DK T + L + ++ E+Q ++ S +PA ++ Y +D + +NLD
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLD 184
Query: 189 WIHVLNFDYY------------LPTRDNFTGAHSAL---YSSSRWFN----TNDTVLGLP 229
+++++ +D++ L R +GA ++L + +W + +LG+P
Sbjct: 185 FVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGMP 244
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVG-FKFIKGFIRDYGY----GAASVYNHSY 284
+G ++TL + + VG+PATG G+ G F G + Y GA
Sbjct: 245 TYGRSFTLASSSDTRVGAPATG-----SGTPGPFTKEGGMLAYYEVCSWKGATKQRIQDQ 299
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + WV FD VE+ ++KVS+ K+KGL G + L DD
Sbjct: 300 KVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 135/285 (47%), Gaps = 45/285 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP++ TLLS+ +G FS + + + +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + TL E +AE QLLL SY + + ++LD
Sbjct: 120 YPGR-RDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTIDSSYDIAKISQHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY------SSSRWFNTN--------------DTVLGL 228
+I ++ +D++ R TG HS L+ S R+ NT+ V+G+
Sbjct: 179 FISIMTYDFHGAWRGT-TGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASKLVMGI 237
Query: 229 PYHGYAWTLVNPDENPVGSPATGPAI-----TIDGSVGFKFIKGFIRDYGYGAASVYNHS 283
P G ++TL + E VG+P +GP I G++ + I F+R GA
Sbjct: 238 PTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR----GATVHRILG 292
Query: 284 YVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E+++SKV + K++ L G + L DD
Sbjct: 293 QQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDD 337
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 44/284 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP + TLLS+ +G FS + +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + L TL E +AE QLLL Y + + R+LD
Sbjct: 120 YPGR-RDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVLGLP 229
+I +L +D++ R G HS L+ +SSR+ N N V+G+P
Sbjct: 179 FISLLTYDFHGAWRQT-VGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYNHSY 284
G ++TL + + VG+P +GP I F KG I D+ +GA +
Sbjct: 238 TFGRSFTLAS-SKTDVGAPVSGPGI----PGRFTKEKGILAYYEICDFLHGATTHRFRDQ 292
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 134/284 (47%), Gaps = 44/284 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP + TLLS+ +G FS++ +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + L TL E +AE QLLL Y + + R+LD
Sbjct: 120 YPGR-RDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVLGLP 229
+I +L +D++ R G HS L+ +SSR+ N N V+G+P
Sbjct: 179 FISLLTYDFHGAWRQT-VGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYNHSY 284
G ++TL + + VG+P +GP + F KG I D+ +GA +
Sbjct: 238 TFGRSFTLAS-SKTDVGAPVSGPGV----PGRFTKEKGILAYYEICDFLHGATTHRFRDQ 292
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 133/284 (46%), Gaps = 44/284 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP++ TLLS+ +G FS + +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + L TL E +AE QLLL Y + + R+LD
Sbjct: 120 YPGR-RDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVLGLP 229
+I +L +D++ R G HS L+ +SSR+ N N V+G+P
Sbjct: 179 FISLLTYDFHGAWRQT-VGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYNHSY 284
G ++TL + + VG+P +GP I F KG I D+ GA +
Sbjct: 238 TFGKSFTLAS-SKTDVGAPVSGPGIPGQ----FTKEKGILAYYEICDFLQGATTHRFRDQ 292
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 149/321 (46%), Gaps = 42/321 (13%)
Query: 45 IHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFS 104
I L SHL+ +FA I ++ + I SE N++K +NP + LLSI GG +F
Sbjct: 26 IDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSI-GGYLFG 82
Query: 105 S-----MINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTN------ITKLGTLFD 153
S M++ S++R FI S + R + F GLD+ + PD+ N I +L F
Sbjct: 83 SKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKENTHFTVLIHELAEAFQ 142
Query: 154 E---WRAESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLP-TRDNFTGAH 209
+ + +LLL + SY ++ + ++LD+I++L+FD++ + TG +
Sbjct: 143 KDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHN 202
Query: 210 SAL----------------YSSSRWFN----TNDTVLGLPYHGYAWTLVNPDENPVGSPA 249
S L Y+ W + + V+G+P +G+++TL + E VG+PA
Sbjct: 203 SPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASA-ETTVGAPA 261
Query: 250 TGP--AITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSK 307
+GP A I S GF I + GA + + WV +D V+++ +K
Sbjct: 262 SGPGAAGPITESSGF-LAYYEICQFLKGAKITRLQDQQVPYAVKGNQWVGYDDVKSMETK 320
Query: 308 VSFAKEKGLLGYHAFQLSNDD 328
V F K L G + + DD
Sbjct: 321 VQFLKNLNLGGAMIWSIDMDD 341
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 153/321 (47%), Gaps = 46/321 (14%)
Query: 45 IHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSI----WGG 100
I L +H++ +FA I+++ + + + + + NT+K+RNP++ TLLS+ +G
Sbjct: 25 IDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDTL--NTLKNRNPNLKTLLSVGGWNYGS 82
Query: 101 AIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP---DKGTNITKLGTLFDEWRA 157
FS + +++ +R++FIKS R +GF GLDL + P DK L TL E +A
Sbjct: 83 QRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLWPGWRDK----RHLTTLVKEMKA 138
Query: 158 E---------SQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGA 208
E QLLL Y + + R+LD+I +L +D++ R G
Sbjct: 139 EFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQT-VGH 197
Query: 209 HSALY-----SSSRWFN--------------TNDTVLGLPYHGYAWTLVNPDENPVGSPA 249
HS L+ +SSR+ N N V+G+P G ++TL + + VG+P
Sbjct: 198 HSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPI 256
Query: 250 TGPAITIDGSVGFKFIKGF--IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSK 307
+GP I +K I + I D+ +GA + + + + WV +D E++++K
Sbjct: 257 SGPGIP-GRFTKWKGILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNK 315
Query: 308 VSFAKEKGLLGYHAFQLSNDD 328
+ K + L G + L DD
Sbjct: 316 ARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 58/327 (17%)
Query: 45 IHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSI----WGG 100
I L +H++ +FA I+++ + + + + + NT+K+RNP++ TLLS+ +G
Sbjct: 25 IDPFLCTHVIYSFANISNNEIDTWEWNDVTLYDTL--NTLKNRNPNLKTLLSVGGWNFGS 82
Query: 101 AIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP---DKGTNITKLGTLFDEWRA 157
FS + +++ +R++FIKS R +GF GLDL + P DK L TL E +A
Sbjct: 83 ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWLYPGWRDK----RHLTTLVKEMKA 138
Query: 158 E---------SQLLLVMTSHHLPALE---SVSYPLDSMQRNLDWIHVLNFDYYLPTRDNF 205
E QLLL S +PA + Y + + R+LD+I +L +D++ R
Sbjct: 139 EFVREAQAGTEQLLL---SAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGT- 194
Query: 206 TGAHSALY-----SSSRWFN--------------TNDTVLGLPYHGYAWTLVNPDENPVG 246
G HS L+ SSR+ N N V+G+P G ++TL + + VG
Sbjct: 195 VGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVG 253
Query: 247 SPATGPAI-----TIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGV 301
+P +GP I G++ + I F+ +GA + + + + WV +D
Sbjct: 254 APISGPGIPGQFTKEKGTLAYYEICDFL----HGATTHRFRDQQVPYATKGNQWVAYDDQ 309
Query: 302 ETIRSKVSFAKEKGLLGYHAFQLSNDD 328
E++++K + K + L G + L DD
Sbjct: 310 ESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 44/284 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP + TLLS+ +G FS + +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + L L E +AE +LLL Y + + R+LD
Sbjct: 120 YPGR-RDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVLGLP 229
+I +L +D++ R G HS L+ +SSR+ N N V+G+P
Sbjct: 179 FISLLTYDFHGAWRQT-VGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYNHSY 284
G ++TL + + VG+P +GP I F KG I D+ +GA +
Sbjct: 238 TFGRSFTLAS-SKTDVGAPISGPGI----PGRFTKEKGILAYYEICDFLHGATTHRFRDQ 292
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 132/287 (45%), Gaps = 50/287 (17%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP++ TLLS+ +G FS + +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LP---DKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQR 185
P DK L TL E +AE QLLL Y + + R
Sbjct: 120 YPGWRDK----RHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQISR 175
Query: 186 NLDWIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVL 226
+LD+I +L +D++ R G HS L+ SSR+ N N V+
Sbjct: 176 HLDFISLLTYDFHGGWRGT-VGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVM 234
Query: 227 GLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYN 281
G+P G ++TL + VG+P +GP I F KG I D+ +GA +
Sbjct: 235 GIPTFGRSYTLASSSTR-VGAPISGPGIPGQ----FTKEKGILAYYEICDFLHGATTHRF 289
Query: 282 HSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 149/329 (45%), Gaps = 53/329 (16%)
Query: 45 IHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFT--NTVKHRNPSVVTLLSI----W 98
I L +HL+ AFA + ++ I T EQ + N +K +N + TLL+I +
Sbjct: 25 IDPCLCTHLIYAFAGMQNNE----ITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKF 80
Query: 99 GGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP-DKGTN----------ITK 147
G A FS+M++ NR+ FI+S + R F GL+L P +G+ + +
Sbjct: 81 GPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKE 140
Query: 148 LGTLFDEWRAES---QLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDN 204
+ F+E E +LLL T + + Y + + ++LD+I V+ +D + P +D
Sbjct: 141 MRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDP-KDG 199
Query: 205 FTGAHSALYSS----------------SRWFN----TNDTVLGLPYHGYAWTLVNPDENP 244
+TG +S LY S S W + + ++G P +G+ + L +P +
Sbjct: 200 YTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTG 259
Query: 245 VGSP--ATGPA---ITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 299
+G+P +TGP G + + + F+ + GA V++ + + WV +D
Sbjct: 260 IGAPTISTGPPGKYTDESGLLAYYEVCTFLNE---GATEVWDAPQEVPYAYQGNEWVGYD 316
Query: 300 GVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
V + + K + K+ L G + L DD
Sbjct: 317 NVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 44/284 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP + TLLS+ +G FS + +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + L L E +AE +LLL Y + + R+LD
Sbjct: 120 YPGR-RDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVLGLP 229
+I +L +D++ R G HS L+ +SSR+ N N V+G+P
Sbjct: 179 FISLLTYDFHGAWRQT-VGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYNHSY 284
G ++TL + + G+P +GP I F KG I D+ +GA +
Sbjct: 238 TFGRSFTLASSKTDG-GAPISGPGI----PGRFTKEKGILAYYEICDFLHGATTHRFRDQ 292
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 131/284 (46%), Gaps = 44/284 (15%)
Query: 82 NTVKHRNPSVVTLLSI----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137
NT+K+RNP + TLLS+ +G FS++ +++ +R++FIKS R +GF GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKGTNITKLGTLFDEWRAE---------SQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
P + + L L E +AE +LLL Y + + R+LD
Sbjct: 120 YPGR-RDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQISRHLD 178
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALY-----SSSRWFN--------------TNDTVLGLP 229
+I +L +D++ R G HS L+ SSR+ N N V+G+P
Sbjct: 179 FISLLTYDFHGAWRQT-VGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 230 YHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGF-----IRDYGYGAASVYNHSY 284
G ++TL + + G+P +GP I F KG I D+ +GA +
Sbjct: 238 TFGRSFTLASSKTDG-GAPISGPGI----PGRFTKEKGILAYYEICDFLHGATTHRFRDQ 292
Query: 285 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+ + + WV +D E++++K + K + L G + L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/329 (23%), Positives = 147/329 (44%), Gaps = 51/329 (15%)
Query: 44 EIHSALFSHLMCAFAFI-NSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSI----W 98
+I+ L +HL+ AFA + N+ I N + + F N +K++N + TLL+I +
Sbjct: 24 DINPCLCTHLIYAFAGMQNNEITTIEWNDVT--LYQAF-NGLKNKNSQLKTLLAIGGWNF 80
Query: 99 GGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--------DKGTNITKLGT 150
G A F++M++ NR++FI S ++ R F GLD P DK +
Sbjct: 81 GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQE 140
Query: 151 LFDEWRAESQLL----LVMTSHHLPALESVS--YPLDSMQRNLDWIHVLNFDYYLPTRDN 204
+ + + E++ + L++T+ + ++ Y + + + LD+IHV+ +D + + +
Sbjct: 141 MREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLH-GSWEG 199
Query: 205 FTGAHSALYS------SSRWFNTN--------------DTVLGLPYHGYAWTLVNPDENP 244
+TG +S LY S+ + N + ++G P +G+ + L NP
Sbjct: 200 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 259
Query: 245 VGSPAT-----GPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 299
+G+P + GP G + I F+++ GA ++ + + WV +D
Sbjct: 260 IGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGYD 316
Query: 300 GVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
V++ K + K G + + DD
Sbjct: 317 NVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 147/329 (44%), Gaps = 51/329 (15%)
Query: 44 EIHSALFSHLMCAFAFI-NSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSI----W 98
+I+ L +HL+ AFA + N+ I N + + F N +K++N + TLL+I +
Sbjct: 28 DINPCLCTHLIYAFAGMQNNEITTIEWNDVT--LYQAF-NGLKNKNSQLKTLLAIGGWNF 84
Query: 99 GGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP--------DKGTNITKLGT 150
G A F++M++ NR++FI S ++ R F GLD P DK +
Sbjct: 85 GTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQE 144
Query: 151 LFDEWRAESQLL----LVMTSHHLPALESVS--YPLDSMQRNLDWIHVLNFDYYLPTRDN 204
+ + + E++ + L++T+ + ++ Y + + + LD+IHV+ +D + + +
Sbjct: 145 MREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLH-GSWEG 203
Query: 205 FTGAHSALYS------SSRWFNTN--------------DTVLGLPYHGYAWTLVNPDENP 244
+TG +S LY S+ + N + ++G P +G+ + L NP
Sbjct: 204 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 263
Query: 245 VGSPAT-----GPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 299
+G+P + GP G + I F+++ GA ++ + + WV +D
Sbjct: 264 IGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGYD 320
Query: 300 GVETIRSKVSFAKEKGLLGYHAFQLSNDD 328
+++ K + K G + + DD
Sbjct: 321 NIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 83/323 (25%)
Query: 84 VKHRNPSVVTLLSIWGGAIFSSMIN--QSSNRKSFIKSSVEMARFNGFH-GLDLHGVLP- 139
+K RNP + + SI GG + + NR +F+ S + + F+ G+D+ P
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPG 297
Query: 140 ------DKGTNIT----------KLGTLFDEWRAESQLLLVMTSH---HLPALESVSYPL 180
DKG + +L + DE AE+ +TS +E V Y
Sbjct: 298 GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY-A 356
Query: 181 DSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS------------------------ 216
D++Q +D+I + +D+Y +N G +ALY S
Sbjct: 357 DAVQY-MDYIFAMTYDFY-GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAY 414
Query: 217 -----------RWFNTNDTVLGLPYHGYAWTLVNPD-----ENPVGSPATGP-------A 253
+ N VLG +G W V PD +P+ ATG
Sbjct: 415 TADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQG 474
Query: 254 ITIDGSVGFKFIKGF--------IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIR 305
+ DG + +K IK F I + YG + +V N + + + FD ++
Sbjct: 475 VWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL--ITFDDHRSVL 532
Query: 306 SKVSFAKEKGLLGYHAFQLSNDD 328
+K ++AK GL G ++++ D+
Sbjct: 533 AKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 124/323 (38%), Gaps = 83/323 (25%)
Query: 84 VKHRNPSVVTLLSIWGGAIFSSMIN--QSSNRKSFIKSSVEMARFNGFH-GLDLHGVLP- 139
+K RNP + + SI G + + NR +F+ S + + F+ G+D+ + P
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWMFPG 297
Query: 140 ------DKGTNIT----------KLGTLFDEWRAESQLLLVMTSH---HLPALESVSYPL 180
DKG + +L + DE AE+ +TS +E V Y
Sbjct: 298 GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY-A 356
Query: 181 DSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS------------------------ 216
D++Q +D+I + +D+Y +N G +ALY S
Sbjct: 357 DAVQY-MDYIFAMTYDFY-GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAY 414
Query: 217 -----------RWFNTNDTVLGLPYHGYAWTLVNPD-----ENPVGSPATGP-------A 253
+ N VLG +G W V PD +P+ ATG
Sbjct: 415 TADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQG 474
Query: 254 ITIDGSVGFKFIKGF--------IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIR 305
+ DG + +K IK F I + YG + +V N + + + FD ++
Sbjct: 475 VWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL--ITFDDHRSVL 532
Query: 306 SKVSFAKEKGLLGYHAFQLSNDD 328
+K ++AK GL G ++++ D+
Sbjct: 533 AKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 123/323 (38%), Gaps = 83/323 (25%)
Query: 84 VKHRNPSVVTLLSIWGGAIFSSMIN--QSSNRKSFIKSSVEMARFNGFH-GLDLHGVLP- 139
+K RNP + + SI G + + NR +F+ S + + F+ G+D+ P
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPG 297
Query: 140 ------DKGTNIT----------KLGTLFDEWRAESQLLLVMTSH---HLPALESVSYPL 180
DKG + +L + DE AE+ +TS +E V Y
Sbjct: 298 GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY-A 356
Query: 181 DSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS------------------------ 216
D++Q +D+I + +D+Y +N G +ALY S
Sbjct: 357 DAVQY-MDYIFAMTYDFY-GGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAY 414
Query: 217 -----------RWFNTNDTVLGLPYHGYAWTLVNPD-----ENPVGSPATGP-------A 253
+ N VLG +G W V PD +P+ ATG
Sbjct: 415 TADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQG 474
Query: 254 ITIDGSVGFKFIKGF--------IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIR 305
+ DG + +K IK F I + YG + +V N + + + FD ++
Sbjct: 475 VWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL--ITFDDHRSVL 532
Query: 306 SKVSFAKEKGLLGYHAFQLSNDD 328
+K ++AK GL G ++++ D+
Sbjct: 533 AKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 113/278 (40%), Gaps = 43/278 (15%)
Query: 84 VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140
+K N S+ +LSI G F + + + R +F K++VE + GF G+D+ P
Sbjct: 98 LKKANRSLKIMLSIGGWTWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPA 157
Query: 141 KGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYP----------LDSMQRNLDWI 190
T+ + L R E ++ S++ P L + LD I
Sbjct: 158 SETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNI 217
Query: 191 HVLNFDYYLPTRDNFTGAHSALYSS-----SRWFNTNDTV--------------LGLPYH 231
+++ +DY + D+ +G + LY S S F+T V LG+P +
Sbjct: 218 NLMAYDY-AGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIY 276
Query: 232 GYAWTLVNPDENPVGSPATG--PAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFF 289
G A+ + P + G + D V K I D GA Y+
Sbjct: 277 GRAFVGTDGPGKPYSTIGEGSWESGIWDYKVLPKAGATVITDSAAGATYSYD-------- 328
Query: 290 SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSND 327
S+ T +++D + +R+KVS+AK GL G ++ S D
Sbjct: 329 SSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/295 (20%), Positives = 114/295 (38%), Gaps = 51/295 (17%)
Query: 82 NTVKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL---- 134
N +K NP++ T++S+ G FS + ++ R+ F S+V+ R F G+DL
Sbjct: 114 NKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEY 173
Query: 135 --------HGVLPDKGTN----ITKLGTLFDEWRA-ESQLLLVMTSHHLPALESVSYPLD 181
+ P+ N ++K+ D A + + L+ + A + + L
Sbjct: 174 PVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANTELA 233
Query: 182 SMQRNLDWIHVLNFDYY-----------------------LPTRDNFTGAHSALYSSSRW 218
+ +DWI+++ +D+ +P + F A A
Sbjct: 234 KIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAG 293
Query: 219 FNTNDTVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVG----FKFIKGFIRDYGY 274
VLG+P++G W N TG + G + +I GY
Sbjct: 294 VPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNGY 353
Query: 275 GAASVYNHSYVMNFF--SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSND 327
+N + + + ++ ++++D E++ K ++ K KGL G ++LS D
Sbjct: 354 --TRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/316 (22%), Positives = 119/316 (37%), Gaps = 73/316 (23%)
Query: 83 TVKHRNPSVVTLLSI--WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140
++ +NP + LLS+ WG FS + +R FI+S+ ++ + G G+DL P
Sbjct: 100 ALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPV 159
Query: 141 KGT------------NITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRNLD 188
G N T L E E +L+ + + + +S + ++ L+
Sbjct: 160 NGAWGLVASQPADRDNFTALLKSLREAVGEQKLVTIAVGANAESPKSW-VDVKAVAPVLN 218
Query: 189 WIHVLNFDYYLPTRDNFTGAHSALYSSSRW------------FNTNDTV----------L 226
+I++ +D T+ F +S LY SS W F N+ + L
Sbjct: 219 YINLXTYDXAYGTQ-YF---NSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQXNL 274
Query: 227 GLPYHGYA----------WTLVNPDENPVGSPATGP-AITIDGSVGFKFIKGFIRDYGYG 275
G+ ++G WT + NPV P GP I + S+G+ K Y
Sbjct: 275 GIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYNDI 334
Query: 276 AASVYNHSYVMNFFS------AKTTWVNFDGVE-------------TIRSKVSFAKEKGL 316
+ N F+ AK W++ E ++ K + K KGL
Sbjct: 335 VGKLLNDP--QKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGL 392
Query: 317 LGYHAFQLSNDDKWEL 332
G ++ DD+ +L
Sbjct: 393 AGAXFWEYGADDQNQL 408
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 85/393 (21%), Positives = 140/393 (35%), Gaps = 99/393 (25%)
Query: 41 PIAEIHSALFSHLMCAFAFINSSTYNIF-INSTSEQFFVIFTN--TVKHRNPSVVTLLSI 97
P EI SHL+ +A + + +N + + F+ ++K + P + LLS+
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLSV 83
Query: 98 WG---------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL------------HG 136
G + + + FI+S+ E+ + GF GLDL HG
Sbjct: 84 GGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHG 143
Query: 137 VLPDKGTNITKLGT----------------------LFDEWRAESQLLLVMTSHHLPALE 174
L +I KL T + D RA+ LL + LP +
Sbjct: 144 DLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTV---LPNVN 200
Query: 175 SVSY-PLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSAL--------------------- 212
S Y + ++ +D++++ FD+ P R+ +SA
Sbjct: 201 STWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVE 260
Query: 213 YSSSRWFNTNDTVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGFIRDY 272
Y S+ F +N LG+ +G AW L D G P P + GF+ K + Y
Sbjct: 261 YWLSQGFPSNKINLGVATYGNAWKLTK-DSGLEGVPVV-PETSGPAPEGFQSQKPGLLSY 318
Query: 273 GYGAASVYN--------HSYVMNFFSAKTT------------------WVNFDGVETIRS 306
+ N + + S T WV++D ++ +
Sbjct: 319 AEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASN 378
Query: 307 KVSFAKEKGLLGYHAFQLSNDDKWELYSAEKQP 339
K ++A+ K L G F LS DD S +K P
Sbjct: 379 KAAYARVKNLGGVALFDLSYDDFRGQCSGDKYP 411
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 58/257 (22%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFI----------------N 70
NW G H +LP+ + +H++ AFA + T +++ +
Sbjct: 51 NWAIYGRNHNPQDLPVERL-----THVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWS 105
Query: 71 STSEQFFVIFTNT--VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMAR 125
T + +K +N ++ LLSI G F+ + + RK+F K++V++ +
Sbjct: 106 DTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQ 165
Query: 126 FNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAE-----------SQLLLVMTSHHLPALE 174
GF GLD+ P+ L E R LL + S P
Sbjct: 166 DLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKI 225
Query: 175 SVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSS-----SRWFNT-------- 221
V + L M + LD+ +++ +D Y + + +G + +Y+ S FNT
Sbjct: 226 KVLH-LKDMDQQLDFWNLMAYD-YAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYR 283
Query: 222 ------NDTVLGLPYHG 232
N VLG+P +G
Sbjct: 284 AGGVPANKIVLGMPLYG 300
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 58/257 (22%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFI----------------N 70
NW G H +LP+ + +H++ AFA + T +++ +
Sbjct: 13 NWAIYGRNHNPQDLPVERL-----THVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWS 67
Query: 71 STSEQFFVIFTNT--VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMAR 125
T + +K +N ++ LLSI G F+ + + RK+F K++V++ +
Sbjct: 68 DTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQ 127
Query: 126 FNGFHGLDLHGVLP--DKGTN-----ITKLGTLFDEWRAES----QLLLVMTSHHLPALE 174
GF GLD+ P D+ N + ++ T D + A + LL + S P
Sbjct: 128 DLGFDGLDIDWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKI 187
Query: 175 SVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSS-----SRWFNT-------- 221
V + L M + LD+ +++ +D Y + + +G + +Y+ S FNT
Sbjct: 188 KVLH-LKDMDQQLDFWNLMAYD-YAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYR 245
Query: 222 ------NDTVLGLPYHG 232
N VLG+P +G
Sbjct: 246 AGGVPANKIVLGMPLYG 262
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 116/317 (36%), Gaps = 76/317 (23%)
Query: 84 VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEM------ARFNG------ 128
+K +NP + ++S+ G FS ++R+ + S +++ F G
Sbjct: 111 LKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGA 170
Query: 129 ----FHGLDLHGVLPDKGTNITKLGTLFDEW--RAESQLLLVMTSHHLPALESV------ 176
F G+D+ P GTN G D RA + LL L A S
Sbjct: 171 AAGIFDGIDIDWEWP--GTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYV 228
Query: 177 ------SYPLD---------SMQRNLDWIHVLNFDYYLPTRDNFTGAHSALY-------S 214
+ P D + ++LD+ + +D + TG + LY +
Sbjct: 229 LSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRA 288
Query: 215 SSRWFNTNDTV--------------LGLPYHGYAWTLVNPDENPVGSPAT--GPAITIDG 258
S+ F+ + V LGL +G WT + +P G PAT P
Sbjct: 289 PSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK-NVSPWG-PATDGAPGTYETA 346
Query: 259 SVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLG 318
+ + +K D+ Y AA+ Y T W ++D + T + K + KGL G
Sbjct: 347 NEDYDKLKTLGTDH-YDAATGSAWRY------DGTQWWSYDNIATTKQKTDYIVSKGLGG 399
Query: 319 YHAFQLSNDDKWELYSA 335
++LS D EL A
Sbjct: 400 GMWWELSGDRNGELVGA 416
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 15/99 (15%)
Query: 84 VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140
+K N ++ TLLSI G F + + RK F +S+++ + GF G+D++ P+
Sbjct: 80 LKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEYPE 139
Query: 141 KGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYP 179
DE +A +LL+ S +P
Sbjct: 140 ------------DEKQANDFVLLLKACREALDAYSAKHP 166
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 84 VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140
+K N ++ TLLSI G F + + RK F +S+++ + GF G+D+ P+
Sbjct: 80 LKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYPE 139
Query: 141 KGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYP 179
DE +A +LL+ S +P
Sbjct: 140 ------------DEKQANDFVLLLKACREALDAYSAKHP 166
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 15/99 (15%)
Query: 84 VKHRNPSVVTLLSIWG---GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140
+K N ++ TLLSI G F + + RK F +S+++ + GF G+D+ P+
Sbjct: 80 LKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEYPE 139
Query: 141 KGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYP 179
DE +A +LL+ S +P
Sbjct: 140 ------------DEKQANDFVLLLKACREALDAYSAKHP 166
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 40 LPIAEIHSA---LFSHLMCAFAFINSS---TYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
P++ I A +H+ +F INS+ ++ N + V +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 94 LLSIWG----------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139
+ SI G A + + + ++R F +S V + + GF G+D++ P
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYP 146
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 40 LPIAEIHSA---LFSHLMCAFAFINSS---TYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
P++ I A +H+ +F INS+ ++ N + V +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 94 LLSIWG----------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139
+ SI G A + + + ++R F +S V + + GF G+D++ P
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYP 146
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 40 LPIAEIHSA---LFSHLMCAFAFINSS---TYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
P++ I A +H+ +F INS+ ++ N + V +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 94 LLSIWG----------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139
+ SI G A + + + ++R F +S V + + GF G+D+ P
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYP 146
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 40 LPIAEIHSA---LFSHLMCAFAFINSS---TYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
P++ I A +H+ +F INS+ ++ N + V +K NPS+
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 89
Query: 94 LLSIWG----------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139
+ SI G A + + + ++R F +S V + + GF G+D+ P
Sbjct: 90 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYP 145
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 40 LPIAEIHSA---LFSHLMCAFAFINSS---TYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
P++ I A +H+ +F INS+ ++ N + V +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 94 LLSIWG----------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139
+ SI G A + + + ++R F +S V + + GF G+D+ P
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYP 146
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 40 LPIAEIHSA---LFSHLMCAFAFINSS---TYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
P++ I A +H+ +F INS+ ++ N + V +K NPS+
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 94 LLSIWG----------GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139
+ SI G A + + + ++R F +S V + + GF G+D+ P
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYP 146
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 19/106 (17%)
Query: 225 VLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSY 284
++G+P +GY W + P AI+ ++ R Y A Y+ Y
Sbjct: 218 IIGVPLYGYDWII------PYQPGTVASAISNQNAIE--------RAMRYQAPIQYSAEY 263
Query: 285 VMNFF-----SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLS 325
FF +T V F+GV ++ K+ +E L A+QL+
Sbjct: 264 QSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLT 309
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 115/317 (36%), Gaps = 70/317 (22%)
Query: 34 WHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVT 93
W S P I +H+ +FA + + + IN ++ + KH +++
Sbjct: 15 WEFESLFPT--IEWKYLTHINASFARVKADG-TLNINPVRKRIESVRETAHKHNVKILIS 71
Query: 94 LLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFD 153
L G F++ IN RK I+ + + G D+ +D
Sbjct: 72 LAKNSPGE-FTTAINDPKARKELIQQIIAFTKEYKLDGFDIDY-------------EEYD 117
Query: 154 EWRAESQLLLVMTSHHLPALES---VSYPLDSM--------QRNLDWIHVLNFDYYLPTR 202
W LLV A E + ++S ++ D+I++ ++D R
Sbjct: 118 NWDKNFPSLLVFARGLYLAKEKNXLXTCAVNSRWLNYGTEWEQYFDYINLXSYD-----R 172
Query: 203 DNFT------GAHSALYSSSRWFN------TNDTVLGLPYHGYAWTLVNPDENPVGSPAT 250
FT ++ +++N + V GLP++GY+W +E+ G+
Sbjct: 173 GAFTDKPVQHASYDDFVKDLKYWNEQCRASKSKIVGGLPFYGYSW-----EESLQGA--- 224
Query: 251 GPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSF 310
+D G ++ G ++ G AA N KT ++G TI +K F
Sbjct: 225 -----VDDVRGIRY-SGILKHLGNEAADKDN--------IGKTY---YNGRPTIANKCKF 267
Query: 311 AKEKGLLGYHAFQLSND 327
KE G +QL D
Sbjct: 268 IKENDYAGVXIWQLFQD 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,051,537
Number of Sequences: 62578
Number of extensions: 466246
Number of successful extensions: 1087
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 47
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)