Query 041898
Match_columns 355
No_of_seqs 220 out of 1483
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:50:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041898.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041898hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 2E-66 4.4E-71 493.9 29.8 313 30-347 1-361 (362)
2 cd02873 GH18_IDGF The IDGF's ( 100.0 4.4E-64 9.5E-69 482.1 31.4 316 30-347 2-412 (413)
3 cd02879 GH18_plant_chitinase_c 100.0 2E-63 4.3E-68 459.5 28.5 264 27-332 2-298 (299)
4 COG3325 ChiA Chitinase [Carboh 100.0 2.7E-61 5.9E-66 441.9 23.9 316 23-343 33-439 (441)
5 cd02878 GH18_zymocin_alpha Zym 100.0 4.1E-60 8.8E-65 445.8 29.1 287 29-327 1-345 (345)
6 KOG2806 Chitinase [Carbohydrat 100.0 5.2E-60 1.1E-64 455.1 30.5 315 29-347 59-419 (432)
7 smart00636 Glyco_18 Glycosyl h 100.0 8.3E-60 1.8E-64 444.1 28.7 290 30-327 2-334 (334)
8 cd06548 GH18_chitinase The GH1 100.0 2.1E-58 4.6E-63 431.3 26.4 257 30-327 1-322 (322)
9 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.3E-54 2.9E-59 405.2 24.7 281 29-332 4-317 (318)
10 PF00704 Glyco_hydro_18: Glyco 100.0 2.8E-53 6.1E-58 401.2 26.5 295 28-327 1-343 (343)
11 cd02875 GH18_chitobiase Chitob 100.0 1E-51 2.3E-56 389.5 28.9 286 25-336 33-348 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 8E-51 1.7E-55 379.3 25.4 271 29-328 3-306 (313)
13 cd06549 GH18_trifunctional GH1 100.0 7.6E-47 1.6E-51 349.1 23.9 269 30-329 2-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 1.4E-45 2.9E-50 333.6 23.7 234 30-335 1-252 (253)
15 cd00598 GH18_chitinase-like Th 100.0 4.2E-37 9.2E-42 270.9 21.5 200 30-327 1-210 (210)
16 COG3858 Predicted glycosyl hyd 100.0 2.8E-35 6.1E-40 269.9 17.9 207 103-329 182-412 (423)
17 cd06544 GH18_narbonin Narbonin 100.0 2.4E-32 5.1E-37 244.7 16.2 190 39-235 12-221 (253)
18 cd06546 GH18_CTS3_chitinase GH 100.0 1.4E-31 3E-36 241.2 21.0 187 29-230 1-217 (256)
19 cd02871 GH18_chitinase_D-like 100.0 4E-29 8.6E-34 232.4 23.5 170 28-200 1-198 (312)
20 KOG2091 Predicted member of gl 99.9 6.5E-26 1.4E-30 199.4 16.3 271 29-327 80-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 3.3E-24 7.1E-29 194.4 19.7 189 29-233 2-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 1.8E-23 3.9E-28 190.0 18.7 189 30-231 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 1.9E-22 4.1E-27 184.5 13.1 150 46-200 22-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.7 2E-15 4.3E-20 129.8 15.4 172 24-200 22-215 (332)
25 KOG4701 Chitinase [Cell wall/m 99.4 1.4E-11 2.9E-16 112.0 17.4 216 1-232 1-258 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.2 3.4E-06 7.4E-11 79.1 8.1 76 80-157 51-133 (339)
27 PF13200 DUF4015: Putative gly 97.6 0.01 2.2E-07 55.1 19.2 148 46-198 23-229 (316)
28 PF02638 DUF187: Glycosyl hydr 97.5 0.00029 6.2E-09 65.6 7.9 119 109-233 135-299 (311)
29 PF03644 Glyco_hydro_85: Glyco 97.5 0.00024 5.1E-09 66.0 7.1 76 80-157 47-129 (311)
30 PF11340 DUF3142: Protein of u 97.2 0.0027 5.8E-08 53.4 9.2 82 110-195 23-107 (181)
31 KOG2331 Predicted glycosylhydr 94.1 0.56 1.2E-05 44.6 10.3 140 82-234 118-274 (526)
32 PF14871 GHL6: Hypothetical gl 92.6 0.46 1E-05 38.3 6.5 60 74-136 43-132 (132)
33 cd02810 DHOD_DHPD_FMN Dihydroo 92.5 2.1 4.5E-05 39.3 11.8 107 75-194 83-197 (289)
34 cd02930 DCR_FMN 2,4-dienoyl-Co 91.5 5.6 0.00012 37.8 13.7 141 50-194 47-245 (353)
35 COG1306 Uncharacterized conser 89.5 1.4 3.1E-05 40.1 7.0 87 114-200 195-301 (400)
36 cd04734 OYE_like_3_FMN Old yel 89.1 8.7 0.00019 36.3 12.6 141 50-194 47-250 (343)
37 TIGR01370 cysRS possible cyste 88.9 2.1 4.5E-05 39.9 8.1 81 109-194 142-236 (315)
38 PF13199 Glyco_hydro_66: Glyco 87.2 1.7 3.7E-05 43.7 6.8 80 108-194 238-330 (559)
39 cd04735 OYE_like_4_FMN Old yel 86.5 8.5 0.00019 36.5 11.0 123 71-197 74-259 (353)
40 COG1649 Uncharacterized protei 85.2 1.9 4.1E-05 41.6 5.7 88 110-197 181-309 (418)
41 cd02803 OYE_like_FMN_family Ol 83.3 8.1 0.00018 36.1 9.2 143 50-196 47-251 (327)
42 cd02932 OYE_YqiM_FMN Old yello 81.8 9.7 0.00021 35.9 9.1 142 49-194 46-262 (336)
43 PF02684 LpxB: Lipid-A-disacch 81.7 8.8 0.00019 36.7 8.7 109 76-194 13-141 (373)
44 TIGR02104 pulA_typeI pullulana 81.5 14 0.00029 38.0 10.6 61 75-137 229-321 (605)
45 cd02801 DUS_like_FMN Dihydrour 81.4 14 0.0003 32.5 9.5 99 84-194 48-159 (231)
46 PRK12568 glycogen branching en 81.3 12 0.00026 39.1 10.0 61 73-135 317-408 (730)
47 PRK10550 tRNA-dihydrouridine s 80.8 10 0.00022 35.4 8.7 92 90-193 62-168 (312)
48 cd04733 OYE_like_2_FMN Old yel 80.4 8.5 0.00018 36.3 8.2 118 73-194 80-257 (338)
49 TIGR02103 pullul_strch alpha-1 80.3 14 0.0003 39.6 10.2 78 75-157 404-515 (898)
50 cd02931 ER_like_FMN Enoate red 78.6 7 0.00015 37.6 7.1 93 74-169 82-227 (382)
51 PF07172 GRP: Glycine rich pro 78.5 1.4 3.1E-05 33.3 1.8 13 1-13 1-13 (95)
52 PLN02495 oxidoreductase, actin 78.1 34 0.00073 32.9 11.4 83 75-169 98-191 (385)
53 PRK07259 dihydroorotate dehydr 77.9 30 0.00066 31.9 10.9 68 90-169 91-166 (301)
54 PRK08318 dihydropyrimidine deh 77.6 36 0.00077 33.1 11.8 77 82-169 91-177 (420)
55 cd04747 OYE_like_5_FMN Old yel 77.4 12 0.00026 35.7 8.2 94 73-169 76-220 (361)
56 PF00724 Oxidored_FMN: NADH:fl 77.3 29 0.00062 32.8 10.7 120 49-171 49-227 (341)
57 TIGR00737 nifR3_yhdG putative 76.0 31 0.00067 32.2 10.5 98 85-194 57-168 (319)
58 cd02940 DHPD_FMN Dihydropyrimi 75.9 48 0.001 30.6 11.6 78 81-169 90-177 (299)
59 cd04740 DHOD_1B_like Dihydroor 75.6 44 0.00095 30.7 11.3 69 89-169 88-163 (296)
60 TIGR02102 pullulan_Gpos pullul 75.2 22 0.00048 39.0 10.3 78 75-157 555-661 (1111)
61 smart00633 Glyco_10 Glycosyl h 74.8 37 0.00079 30.5 10.3 89 76-170 104-195 (254)
62 cd04741 DHOD_1A_like Dihydroor 73.7 47 0.001 30.6 10.9 85 74-170 73-167 (294)
63 PLN02960 alpha-amylase 73.7 27 0.00059 37.1 10.1 61 73-135 464-556 (897)
64 PF14885 GHL15: Hypothetical g 72.8 5.6 0.00012 28.9 3.6 35 103-137 41-76 (79)
65 COG4724 Endo-beta-N-acetylgluc 72.7 14 0.00029 35.2 6.9 77 79-157 131-217 (553)
66 PLN02411 12-oxophytodienoate r 72.5 12 0.00026 36.1 6.9 54 114-169 165-240 (391)
67 PF01120 Alpha_L_fucos: Alpha- 71.9 58 0.0013 30.8 11.3 89 73-164 136-242 (346)
68 TIGR02402 trehalose_TreZ malto 71.8 13 0.00029 37.5 7.3 63 73-137 158-246 (542)
69 PF04914 DltD_C: DltD C-termin 71.6 23 0.00051 28.4 7.3 58 75-134 36-95 (130)
70 COG1902 NemA NADH:flavin oxido 70.7 15 0.00032 35.1 6.9 121 74-197 82-262 (363)
71 PRK07565 dihydroorotate dehydr 69.9 68 0.0015 30.1 11.3 105 73-193 85-197 (334)
72 PRK02506 dihydroorotate dehydr 69.8 51 0.0011 30.7 10.3 86 73-170 75-167 (310)
73 PRK03705 glycogen debranching 68.9 16 0.00035 37.8 7.2 81 75-157 242-359 (658)
74 PF00834 Ribul_P_3_epim: Ribul 68.8 18 0.00039 31.4 6.6 76 103-196 62-137 (201)
75 cd02929 TMADH_HD_FMN Trimethyl 68.4 27 0.00059 33.4 8.3 142 50-194 52-259 (370)
76 TIGR02100 glgX_debranch glycog 67.6 19 0.00041 37.6 7.5 82 74-157 244-365 (688)
77 PRK13523 NADPH dehydrogenase N 67.4 1.1E+02 0.0023 28.9 12.0 142 49-194 50-248 (337)
78 PRK12313 glycogen branching en 67.3 19 0.00041 37.1 7.5 61 73-135 218-309 (633)
79 cd06591 GH31_xylosidase_XylS X 67.1 31 0.00068 32.2 8.3 72 66-139 57-160 (319)
80 PRK10605 N-ethylmaleimide redu 66.9 40 0.00087 32.1 9.1 81 113-195 158-271 (362)
81 cd06589 GH31 The enzymes of gl 66.0 27 0.00058 31.6 7.4 53 75-140 66-118 (265)
82 TIGR01515 branching_enzym alph 65.6 20 0.00044 36.8 7.2 62 73-136 204-296 (613)
83 PF14883 GHL13: Hypothetical g 65.6 1E+02 0.0023 28.3 10.8 149 48-199 29-230 (294)
84 COG3867 Arabinogalactan endo-1 65.4 63 0.0014 29.8 9.3 114 73-195 102-252 (403)
85 PRK05402 glycogen branching en 65.1 22 0.00047 37.4 7.5 62 73-136 313-405 (726)
86 PRK03995 hypothetical protein; 64.5 16 0.00035 33.2 5.5 66 89-155 179-260 (267)
87 PRK01021 lpxB lipid-A-disaccha 63.7 38 0.00082 34.6 8.5 109 77-194 242-369 (608)
88 PRK08091 ribulose-phosphate 3- 63.5 37 0.0008 30.1 7.5 78 102-196 72-150 (228)
89 TIGR01037 pyrD_sub1_fam dihydr 63.5 1.2E+02 0.0025 28.0 11.3 89 90-193 90-189 (300)
90 COG0763 LpxB Lipid A disacchar 63.1 40 0.00086 32.2 8.0 108 77-194 17-144 (381)
91 cd04738 DHOD_2_like Dihydrooro 62.8 51 0.0011 30.9 8.9 76 89-170 127-212 (327)
92 cd06602 GH31_MGAM_SI_GAA This 62.3 40 0.00086 31.8 8.1 34 107-140 134-167 (339)
93 PLN02877 alpha-amylase/limit d 62.0 43 0.00094 36.2 8.9 79 76-156 467-580 (970)
94 PF07364 DUF1485: Protein of u 61.7 82 0.0018 29.1 9.8 106 76-192 46-157 (292)
95 KOG3111 D-ribulose-5-phosphate 61.1 38 0.00082 29.1 6.7 76 103-196 69-144 (224)
96 TIGR00742 yjbN tRNA dihydrouri 60.6 46 0.001 31.1 8.1 74 84-169 48-132 (318)
97 PF14488 DUF4434: Domain of un 60.0 1E+02 0.0022 25.8 11.9 116 47-166 31-160 (166)
98 PRK05286 dihydroorotate dehydr 59.9 84 0.0018 29.7 9.8 99 89-194 136-246 (344)
99 PRK08255 salicylyl-CoA 5-hydro 59.3 57 0.0012 34.6 9.4 79 113-193 550-658 (765)
100 PRK14706 glycogen branching en 58.8 36 0.00078 35.2 7.6 62 73-136 215-307 (639)
101 PF02065 Melibiase: Melibiase; 58.7 35 0.00076 33.0 7.1 94 74-169 103-236 (394)
102 PRK08005 epimerase; Validated 57.3 38 0.00083 29.6 6.5 77 102-196 62-138 (210)
103 PRK11815 tRNA-dihydrouridine s 57.1 58 0.0013 30.6 8.2 72 84-167 58-140 (333)
104 PF01207 Dus: Dihydrouridine s 57.0 49 0.0011 30.8 7.6 76 83-170 46-132 (309)
105 PRK10785 maltodextrin glucosid 56.0 1.3E+02 0.0028 30.9 11.0 63 73-137 224-337 (598)
106 cd06600 GH31_MGAM-like This fa 55.6 57 0.0012 30.4 7.8 34 107-140 129-162 (317)
107 PLN03244 alpha-amylase; Provis 55.6 1.2E+02 0.0026 32.2 10.5 61 73-135 439-531 (872)
108 PRK14866 hypothetical protein; 55.2 23 0.00049 34.7 5.1 66 89-156 183-264 (451)
109 cd02933 OYE_like_FMN Old yello 53.6 49 0.0011 31.2 7.1 55 114-170 152-228 (338)
110 smart00812 Alpha_L_fucos Alpha 51.6 76 0.0017 30.6 8.1 82 73-157 126-221 (384)
111 PRK09722 allulose-6-phosphate 49.8 62 0.0013 28.7 6.7 77 103-196 64-140 (229)
112 cd04739 DHOD_like Dihydroorota 49.7 2.2E+02 0.0049 26.6 11.5 68 90-169 99-172 (325)
113 PLN02447 1,4-alpha-glucan-bran 48.6 43 0.00093 35.2 6.2 61 73-135 298-390 (758)
114 PF05763 DUF835: Protein of un 47.7 49 0.0011 26.7 5.3 61 108-168 55-119 (136)
115 PF12138 Spherulin4: Spherulat 47.7 2.1E+02 0.0046 25.7 11.3 73 73-157 51-134 (253)
116 PRK14705 glycogen branching en 47.6 53 0.0011 36.6 7.0 62 73-136 813-905 (1224)
117 PF10566 Glyco_hydro_97: Glyco 47.4 70 0.0015 29.2 6.7 83 73-168 71-156 (273)
118 cd02911 arch_FMN Archeal FMN-b 44.9 2.2E+02 0.0048 25.2 11.4 97 78-192 62-171 (233)
119 cd06599 GH31_glycosidase_Aec37 44.8 1E+02 0.0022 28.7 7.7 63 75-139 73-169 (317)
120 cd06595 GH31_xylosidase_XylS-l 44.6 1.1E+02 0.0025 28.0 7.9 71 67-139 66-160 (292)
121 PF08885 GSCFA: GSCFA family; 44.3 68 0.0015 28.9 6.2 52 75-126 152-209 (251)
122 PLN02334 ribulose-phosphate 3- 44.2 1.2E+02 0.0025 26.7 7.7 67 121-196 81-149 (229)
123 COG0296 GlgB 1,4-alpha-glucan 42.8 83 0.0018 32.3 7.1 62 73-136 212-304 (628)
124 PRK08883 ribulose-phosphate 3- 41.8 89 0.0019 27.5 6.4 76 103-196 63-138 (220)
125 PRK08745 ribulose-phosphate 3- 41.8 1.2E+02 0.0025 26.9 7.1 76 103-196 67-142 (223)
126 PRK14057 epimerase; Provisiona 41.2 1.5E+02 0.0033 26.7 7.8 77 103-196 80-164 (254)
127 PF00331 Glyco_hydro_10: Glyco 40.6 1.6E+02 0.0034 27.5 8.3 72 78-157 159-231 (320)
128 TIGR01163 rpe ribulose-phospha 40.1 93 0.002 26.6 6.3 64 121-196 72-136 (210)
129 PRK14510 putative bifunctional 39.8 1.6E+02 0.0034 33.2 9.2 62 74-138 246-345 (1221)
130 cd06598 GH31_transferase_CtsZ 39.6 1.2E+02 0.0027 28.1 7.4 61 75-139 70-165 (317)
131 PF14587 Glyco_hydr_30_2: O-Gl 39.5 79 0.0017 30.3 6.0 85 70-157 99-211 (384)
132 cd01827 sialate_O-acetylestera 39.4 1E+02 0.0022 25.6 6.4 61 74-134 92-154 (188)
133 PF02057 Glyco_hydro_59: Glyco 39.4 54 0.0012 33.8 5.1 74 79-157 116-195 (669)
134 PLN03231 putative alpha-galact 38.6 1E+02 0.0022 29.4 6.6 56 112-167 160-216 (357)
135 COG2342 Predicted extracellula 37.9 1.5E+02 0.0033 27.1 7.2 76 116-194 127-217 (300)
136 PF04414 tRNA_deacylase: D-ami 37.0 36 0.00078 29.8 3.1 64 92-156 131-208 (213)
137 PF01487 DHquinase_I: Type I 3 36.8 1.9E+02 0.0041 25.2 7.8 74 87-169 110-184 (224)
138 COG0036 Rpe Pentose-5-phosphat 36.0 2.1E+02 0.0046 25.2 7.7 77 102-196 65-141 (220)
139 PRK14581 hmsF outer membrane N 35.9 1.4E+02 0.0031 31.1 7.6 148 48-198 346-575 (672)
140 COG0393 Uncharacterized conser 35.6 60 0.0013 25.1 3.7 42 97-140 43-88 (108)
141 COG2874 FlaH Predicted ATPases 35.5 1.7E+02 0.0036 25.9 6.8 96 75-170 66-168 (235)
142 PF14307 Glyco_tran_WbsX: Glyc 35.1 45 0.00098 31.5 3.7 29 299-327 55-83 (345)
143 PF07745 Glyco_hydro_53: Glyco 34.1 3.2E+02 0.0069 25.8 9.1 123 73-203 56-212 (332)
144 TIGR03234 OH-pyruv-isom hydrox 34.0 71 0.0015 28.4 4.7 21 117-137 16-36 (254)
145 PRK05581 ribulose-phosphate 3- 33.9 2.7E+02 0.0058 23.9 8.3 64 123-197 79-142 (220)
146 PRK07094 biotin synthase; Prov 33.9 2E+02 0.0044 26.6 7.9 40 118-157 129-176 (323)
147 KOG1643 Triosephosphate isomer 33.9 3.2E+02 0.007 23.8 8.2 64 89-156 118-191 (247)
148 cd00429 RPE Ribulose-5-phospha 33.7 2.4E+02 0.0051 24.0 7.9 65 121-196 73-137 (211)
149 TIGR01233 lacG 6-phospho-beta- 33.6 71 0.0015 31.7 4.9 77 53-134 72-153 (467)
150 cd01841 NnaC_like NnaC (CMP-Ne 33.4 1.4E+02 0.0031 24.4 6.2 62 74-135 74-137 (174)
151 COG3410 Uncharacterized conser 33.3 91 0.002 26.1 4.6 46 108-156 145-190 (191)
152 COG2100 Predicted Fe-S oxidore 33.3 1.3E+02 0.0027 28.3 6.0 67 126-195 155-223 (414)
153 TIGR00736 nifR3_rel_arch TIM-b 32.8 3.5E+02 0.0077 24.0 10.2 97 78-192 58-167 (231)
154 PRK14582 pgaB outer membrane N 32.0 52 0.0011 34.1 3.8 20 179-198 556-575 (671)
155 TIGR03849 arch_ComA phosphosul 31.8 1.5E+02 0.0032 26.5 6.1 71 75-157 41-111 (237)
156 PF03328 HpcH_HpaI: HpcH/HpaI 31.5 2E+02 0.0042 25.1 7.0 72 120-192 13-90 (221)
157 TIGR01093 aroD 3-dehydroquinat 30.6 3.7E+02 0.008 23.5 9.6 69 77-156 107-175 (228)
158 cd07321 Extradiol_Dioxygenase_ 30.5 52 0.0011 23.7 2.6 28 103-130 9-36 (77)
159 PF05691 Raffinose_syn: Raffin 30.3 1.2E+02 0.0026 31.9 5.9 66 74-139 287-392 (747)
160 COG3053 CitC Citrate lyase syn 30.1 3.9E+02 0.0085 24.8 8.5 52 143-194 125-179 (352)
161 PF07476 MAAL_C: Methylasparta 29.2 2.2E+02 0.0047 25.2 6.5 118 75-200 47-175 (248)
162 PRK09505 malS alpha-amylase; R 29.2 66 0.0014 33.6 4.0 29 109-137 435-463 (683)
163 cd06593 GH31_xylosidase_YicI Y 29.1 3.4E+02 0.0074 24.9 8.5 31 107-138 129-159 (308)
164 PF14883 GHL13: Hypothetical g 29.0 4E+02 0.0086 24.6 8.4 74 78-157 174-248 (294)
165 PRK02412 aroD 3-dehydroquinate 28.5 4.3E+02 0.0094 23.6 9.6 69 76-155 123-191 (253)
166 PF02055 Glyco_hydro_30: O-Gly 28.4 47 0.001 33.2 2.7 59 78-136 156-226 (496)
167 PRK05437 isopentenyl pyrophosp 28.3 5.2E+02 0.011 24.5 9.9 101 82-195 112-219 (352)
168 PLN02711 Probable galactinol-- 28.0 1.4E+02 0.0031 31.2 6.1 64 75-138 305-408 (777)
169 PLN02161 beta-amylase 27.6 1.5E+02 0.0033 29.5 5.9 55 113-168 116-177 (531)
170 cd00019 AP2Ec AP endonuclease 26.9 1.9E+02 0.0041 26.1 6.3 52 117-168 12-67 (279)
171 cd01828 sialate_O-acetylestera 26.8 2.5E+02 0.0054 22.8 6.6 59 75-134 72-130 (169)
172 COG0552 FtsY Signal recognitio 26.8 3.6E+02 0.0078 25.5 7.9 57 53-130 140-196 (340)
173 PLN00197 beta-amylase; Provisi 26.7 1.6E+02 0.0035 29.6 5.9 54 114-168 127-187 (573)
174 smart00733 Mterf Mitochondrial 26.6 61 0.0013 17.5 2.0 21 295-316 10-30 (31)
175 PRK15014 6-phospho-beta-glucos 26.5 1.5E+02 0.0033 29.4 5.9 46 53-100 88-133 (477)
176 TIGR01036 pyrD_sub2 dihydrooro 26.5 4.5E+02 0.0097 24.7 8.8 88 77-170 121-220 (335)
177 COG3693 XynA Beta-1,4-xylanase 26.3 5.5E+02 0.012 24.2 9.8 69 82-157 178-249 (345)
178 TIGR01769 GGGP geranylgeranylg 26.2 3.7E+02 0.0081 23.4 7.6 74 108-195 5-78 (205)
179 PLN02899 alpha-galactosidase 26.1 1.8E+02 0.004 29.8 6.3 55 112-167 192-247 (633)
180 PRK10558 alpha-dehydro-beta-de 25.8 2.1E+02 0.0046 25.8 6.2 46 120-168 32-77 (256)
181 PRK09936 hypothetical protein; 25.4 5.4E+02 0.012 23.8 14.6 143 48-199 50-212 (296)
182 COG5309 Exo-beta-1,3-glucanase 25.3 1.7E+02 0.0036 26.7 5.2 54 81-134 221-279 (305)
183 PRK13575 3-dehydroquinate dehy 25.3 4.9E+02 0.011 23.2 10.4 73 74-157 46-123 (238)
184 cd06592 GH31_glucosidase_KIAA1 25.2 88 0.0019 28.9 3.8 33 107-139 134-166 (303)
185 KOG3035 Isoamyl acetate-hydrol 25.2 2.3E+02 0.005 25.0 5.9 84 73-157 98-210 (245)
186 TIGR02803 ExbD_1 TonB system t 25.0 3.3E+02 0.0072 21.1 8.5 65 58-134 52-118 (122)
187 cd04724 Tryptophan_synthase_al 25.0 2.5E+02 0.0055 24.9 6.6 66 120-196 96-162 (242)
188 KOG1552 Predicted alpha/beta h 24.4 59 0.0013 29.3 2.3 41 189-235 88-139 (258)
189 TIGR03239 GarL 2-dehydro-3-deo 24.3 2.3E+02 0.0051 25.4 6.2 46 120-168 25-70 (249)
190 PRK14192 bifunctional 5,10-met 24.2 5.6E+02 0.012 23.5 10.9 57 110-169 44-101 (283)
191 PF08501 Shikimate_dh_N: Shiki 24.0 2.5E+02 0.0055 20.1 5.4 44 122-170 17-60 (83)
192 PRK01060 endonuclease IV; Prov 23.8 1.2E+02 0.0026 27.3 4.4 23 117-139 14-36 (281)
193 KOG3233 RNA polymerase III, su 23.8 2.8E+02 0.0061 25.3 6.4 77 79-156 128-218 (297)
194 PLN02803 beta-amylase 23.8 2.3E+02 0.005 28.4 6.4 54 114-168 107-167 (548)
195 PLN02982 galactinol-raffinose 23.7 2E+02 0.0043 30.5 6.1 64 75-138 390-492 (865)
196 PRK09441 cytoplasmic alpha-amy 23.5 1.3E+02 0.0029 29.8 4.9 46 109-157 207-252 (479)
197 PRK12855 hypothetical protein; 23.4 1.5E+02 0.0032 22.8 4.0 40 97-138 43-86 (103)
198 PLN02705 beta-amylase 23.2 2E+02 0.0043 29.5 5.8 54 114-168 268-328 (681)
199 PF06183 DinI: DinI-like famil 23.2 2.6E+02 0.0057 19.3 5.0 46 76-122 9-54 (65)
200 PF01180 DHO_dh: Dihydroorotat 22.6 5.9E+02 0.013 23.2 9.2 71 90-170 96-172 (295)
201 PF14606 Lipase_GDSL_3: GDSL-l 22.4 3.4E+02 0.0073 23.1 6.4 62 73-134 76-141 (178)
202 COG5185 HEC1 Protein involved 22.2 1.1E+02 0.0025 29.9 3.9 60 104-165 97-158 (622)
203 COG1523 PulA Type II secretory 22.0 2.7E+02 0.0059 29.1 6.8 63 75-139 265-363 (697)
204 PLN02801 beta-amylase 22.0 2.7E+02 0.0058 27.8 6.4 55 114-168 36-97 (517)
205 PF04476 DUF556: Protein of un 22.0 4.7E+02 0.01 23.3 7.4 73 75-157 99-178 (235)
206 COG0042 tRNA-dihydrouridine sy 22.0 2.6E+02 0.0056 26.2 6.2 67 92-170 68-146 (323)
207 PF14443 DBC1: DBC1 22.0 72 0.0016 25.4 2.1 38 93-134 18-58 (126)
208 PRK13575 3-dehydroquinate dehy 21.9 5.7E+02 0.012 22.7 9.5 66 76-155 113-178 (238)
209 PRK10397 lipoprotein; Provisio 21.9 2.9E+02 0.0063 22.0 5.4 55 8-68 5-66 (137)
210 cd07922 CarBa CarBa is the A s 21.7 95 0.0021 22.7 2.6 28 103-130 10-37 (81)
211 PF07582 AP_endonuc_2_N: AP en 21.6 2.5E+02 0.0055 18.8 4.4 38 118-156 3-41 (55)
212 COG2723 BglB Beta-glucosidase/ 21.6 3.7E+02 0.008 26.6 7.3 77 50-128 75-157 (460)
213 PF04468 PSP1: PSP1 C-terminal 21.6 2.1E+02 0.0045 21.1 4.5 47 111-157 22-77 (88)
214 PRK08508 biotin synthase; Prov 21.6 1.5E+02 0.0032 27.1 4.5 69 73-157 73-148 (279)
215 COG3623 SgaU Putative L-xylulo 21.5 3.4E+02 0.0074 24.3 6.3 111 55-168 32-154 (287)
216 PRK10426 alpha-glucosidase; Pr 21.4 3.1E+02 0.0067 28.4 7.2 61 75-137 269-362 (635)
217 PF07312 DUF1459: Protein of u 21.1 1.1E+02 0.0023 22.2 2.6 35 1-36 1-35 (84)
218 TIGR00262 trpA tryptophan synt 21.0 4.1E+02 0.0089 23.9 7.2 64 121-195 108-172 (256)
219 cd01825 SGNH_hydrolase_peri1 S 20.9 2.9E+02 0.0062 22.7 5.9 61 73-134 79-143 (189)
220 TIGR02109 PQQ_syn_pqqE coenzym 20.9 5E+02 0.011 24.4 8.1 23 118-140 95-117 (358)
221 PRK13125 trpA tryptophan synth 20.9 3.8E+02 0.0083 23.7 6.9 65 121-196 94-161 (244)
222 PF02679 ComA: (2R)-phospho-3- 20.8 1.3E+02 0.0027 27.1 3.7 108 74-194 53-168 (244)
223 COG3934 Endo-beta-mannanase [C 20.6 1.9E+02 0.0042 28.6 5.1 114 77-195 69-208 (587)
224 PRK05301 pyrroloquinoline quin 20.5 3.8E+02 0.0082 25.5 7.3 22 118-139 104-125 (378)
225 COG1908 FrhD Coenzyme F420-red 20.3 1.4E+02 0.0031 23.6 3.4 40 117-157 80-119 (132)
226 PLN02905 beta-amylase 20.3 2.4E+02 0.0052 29.0 5.8 54 114-168 286-346 (702)
227 cd01838 Isoamyl_acetate_hydrol 20.2 3.3E+02 0.0071 22.4 6.2 61 74-134 91-162 (199)
228 cd01831 Endoglucanase_E_like E 20.1 4.5E+02 0.0098 21.3 6.9 49 74-128 80-128 (169)
229 cd06591 GH31_xylosidase_XylS X 20.1 1.9E+02 0.0042 26.9 5.0 41 117-157 26-77 (319)
230 PF10731 Anophelin: Thrombin i 20.1 1.2E+02 0.0026 20.7 2.5 17 1-17 1-17 (65)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=2e-66 Score=493.93 Aligned_cols=313 Identities=29% Similarity=0.471 Sum_probs=274.8
Q ss_pred EEEEecCCC-------CCCccccCCCCccEEEEEEEEEeCCCcEEEeCCC---ChHHHHHHHHHHHhcCCCcEEEEEEcC
Q 041898 30 RGGYWHAHS-------ELPIAEIHSALFSHLMCAFAFINSSTYNIFINST---SEQFFVIFTNTVKHRNPSVVTLLSIWG 99 (355)
Q Consensus 30 ~~~Y~~~~~-------~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~~~~kvllsiGG 99 (355)
++|||+.|. .|.+++++.++||||+|+|+.++++|........ +...+.++. .+|++||++||++||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEcC
Confidence 478998832 5788999999999999999999998644333221 345667775 79999999999999999
Q ss_pred Cc----chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC----CccHHHHHHHHHHHHc---cC--CcEEEEE
Q 041898 100 GA----IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK----GTNITKLGTLFDEWRA---ES--QLLLVMT 166 (355)
Q Consensus 100 ~~----~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~----~~~~~~~~~~l~~lr~---~~--~~~ls~a 166 (355)
|. .|+.++++++.|++||+++++++++|+|||||||||+|.. ++++++|+.||++||+ .. +++||++
T Consensus 80 ~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 80 WNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred CCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 86 6999999999999999999999999999999999999974 5789999999999999 33 7999999
Q ss_pred eccCCcccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcc---------c-------ccc----cCceEE
Q 041898 167 SHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS---------R-------WFN----TNDTVL 226 (355)
Q Consensus 167 ~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~---------~-------~~~----~~Klvl 226 (355)
+|+.+......||+++|.+++|+|+||+||++++| +..+|++|||+... . |++ |+||+|
T Consensus 160 v~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~Klvl 238 (362)
T cd02872 160 VSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLVL 238 (362)
T ss_pred ecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHHeEe
Confidence 99877666667999999999999999999999997 57899999997421 0 443 999999
Q ss_pred eceeeeeeeEecCCCCCCCCCCccCCCC-----CCCCccchHHHHHhhhcCCCceeEEEecCceeeEEEeCCEEEEeCCH
Q 041898 227 GLPYHGYAWTLVNPDENPVGSPATGPAI-----TIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGV 301 (355)
Q Consensus 227 Glp~yG~~~~~~~~~~~~~~~p~~~~~~-----~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~v~ydd~ 301 (355)
|||+|||.|++.+..++++|+|+.+++. .++|.++|.|||+.+ +.+ ++..||+.+++||.+.+++||+|||+
T Consensus 239 Glp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~~v~ydd~ 315 (362)
T cd02872 239 GIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQWVGYDDE 315 (362)
T ss_pred ccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCEEEEeCCH
Confidence 9999999999998888888999877653 367899999999987 667 89999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCCCCCcchhhhcccccccccccc
Q 041898 302 ETIRSKVSFAKEKGLLGYHAFQLSNDDKWELYSAEKQPADVGNYRE 347 (355)
Q Consensus 302 ~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~~l~~~~~~~l~~~~~~~ 347 (355)
+|++.|++|++++||||+++|++++||+.+.|+...+||+++|++.
T Consensus 316 ~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~ 361 (362)
T cd02872 316 ESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRA 361 (362)
T ss_pred HHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHh
Confidence 9999999999999999999999999999999998899999999764
No 2
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=4.4e-64 Score=482.08 Aligned_cols=316 Identities=23% Similarity=0.389 Sum_probs=259.2
Q ss_pred EEEEecCC-------CCCCccccCCCC--ccEEEEEEEEEeCCCcEEEeCCC----ChHHHHHHHHHHHhcCCCcEEEEE
Q 041898 30 RGGYWHAH-------SELPIAEIHSAL--FSHLMCAFAFINSSTYNIFINST----SEQFFVIFTNTVKHRNPSVVTLLS 96 (355)
Q Consensus 30 ~~~Y~~~~-------~~~~~~~~~~~~--~thvi~~f~~~~~~~~~~~~~~~----~~~~~~~~~~~lk~~~~~~kvlls 96 (355)
++|||+.+ ..|.+++|+... ||||+|+|+.++++++.+...+. ....+.++. .+|++||++|+|+|
T Consensus 2 vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvllS 80 (413)
T cd02873 2 LVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLLS 80 (413)
T ss_pred EEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEEe
Confidence 68999873 256789999865 99999999999998777765443 235577776 79999999999999
Q ss_pred EcCCc---------chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC--------------------------
Q 041898 97 IWGGA---------IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-------------------------- 141 (355)
Q Consensus 97 iGG~~---------~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-------------------------- 141 (355)
||||. .|+.++++++.|++||++++++|++|+|||||||||||..
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 99995 3899999999999999999999999999999999999852
Q ss_pred ----CccHHHHHHHHHHHHc---cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeeccCcCCCCCC-CCCCCCCCC
Q 041898 142 ----GTNITKLGTLFDEWRA---ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDN-FTGAHSALY 213 (355)
Q Consensus 142 ----~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~-~~g~~apl~ 213 (355)
++|+++|+.||++||+ ..+++|++++++.... ...||+++|+++|||||||+||+|++|... .++++|||+
T Consensus 161 ~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~ 239 (413)
T cd02873 161 DEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAPIY 239 (413)
T ss_pred CCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCCccC
Confidence 4688999999999999 6678999998754322 225899999999999999999999987543 689999998
Q ss_pred Ccc------c-------ccc----cCceEEeceeeeeeeEecCCCC-CCC--CCCccCC-----CCCCCCccchHHHHHh
Q 041898 214 SSS------R-------WFN----TNDTVLGLPYHGYAWTLVNPDE-NPV--GSPATGP-----AITIDGSVGFKFIKGF 268 (355)
Q Consensus 214 ~~~------~-------~~~----~~KlvlGlp~yG~~~~~~~~~~-~~~--~~p~~~~-----~~~~~g~~~y~ei~~~ 268 (355)
... . |+. |+|||||||+|||.|+++++.. .+. .+|..|+ ...++|.++|.|||..
T Consensus 240 ~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~~~ 319 (413)
T cd02873 240 ELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEICSK 319 (413)
T ss_pred CCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHHHh
Confidence 432 1 554 9999999999999999886532 221 1233333 2346789999999997
Q ss_pred hhcCC------CceeEEEecCce-eeEEEe-------CCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchhh
Q 041898 269 IRDYG------YGAASVYNHSYV-MNFFSA-------KTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDDKWELYS 334 (355)
Q Consensus 269 ~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~~l~~ 334 (355)
+...+ ..++..||+..+ .+|+|. +++||+|||++|++.|++|++++||||+|+|++++||+.+.|+
T Consensus 320 ~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~c~ 399 (413)
T cd02873 320 LPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQCT 399 (413)
T ss_pred hccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCCcC
Confidence 76431 014567888776 589882 2579999999999999999999999999999999999999998
Q ss_pred hcccccccccccc
Q 041898 335 AEKQPADVGNYRE 347 (355)
Q Consensus 335 ~~~~~l~~~~~~~ 347 (355)
...+||++++++.
T Consensus 400 ~~~~pll~~i~~~ 412 (413)
T cd02873 400 GDKFPILRSAKYR 412 (413)
T ss_pred CCCChHHHHHHhh
Confidence 8899999999764
No 3
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=2e-63 Score=459.53 Aligned_cols=264 Identities=45% Similarity=0.827 Sum_probs=236.6
Q ss_pred CcEEEEEecCCC-CCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc----
Q 041898 27 NWIRGGYWHAHS-ELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA---- 101 (355)
Q Consensus 27 ~~~~~~Y~~~~~-~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~---- 101 (355)
.-+++|||++|. .+.+++++.++||||+|+|+.++++++.+...+.+...+..+++.+|+++|++|+|+|||||+
T Consensus 2 ~~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~ 81 (299)
T cd02879 2 TIVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSS 81 (299)
T ss_pred CeEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 357899999976 899999999999999999999999877787776667778888888999999999999999986
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc--c--------CCcEEEEEeccCC
Q 041898 102 IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA--E--------SQLLLVMTSHHLP 171 (355)
Q Consensus 102 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~--~--------~~~~ls~a~~~~~ 171 (355)
.|+.++++++.|++||+++++++++|+|||||||||+|..++|+++|+.||++||+ . ++++||+++|+.+
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~ 161 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSP 161 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccch
Confidence 69999999999999999999999999999999999999888899999999999998 2 5789999998766
Q ss_pred cc----cccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCccc----------ccc----cCceEEeceeeee
Q 041898 172 AL----ESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSR----------WFN----TNDTVLGLPYHGY 233 (355)
Q Consensus 172 ~~----~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~----------~~~----~~KlvlGlp~yG~ 233 (355)
.. ....||++++.++||||+||+||++|+|....++|+|||+.+.. |++ |+|||||+|+|||
T Consensus 162 ~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr 241 (299)
T cd02879 162 ILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYGR 241 (299)
T ss_pred hhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEeccccc
Confidence 54 34468999999999999999999999987667899999985321 554 9999999999999
Q ss_pred eeEecCCCCCCCCCCccCCCCCCCCccchHHHHHhhhcCCCceeEEEecCceeeEEEeCCEEEEeCCHHHHHHHHHHHHH
Q 041898 234 AWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKE 313 (355)
Q Consensus 234 ~~~~~~~~~~~~~~p~~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~v~ydd~~S~~~K~~~~~~ 313 (355)
.|++ ||+.+.+||.+.+++||+|||++|++.|++|+++
T Consensus 242 ~~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~ 279 (299)
T cd02879 242 AWTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQ 279 (299)
T ss_pred cccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHh
Confidence 9952 6777788999999999999999999999999999
Q ss_pred cCCCEEEEEecCCCCCcch
Q 041898 314 KGLLGYHAFQLSNDDKWEL 332 (355)
Q Consensus 314 ~gl~Gv~iW~l~~Dd~~~l 332 (355)
+||||+|+|++++||...|
T Consensus 280 ~~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 280 KGLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred CCCCeEEEEEeecCCcccc
Confidence 9999999999999997654
No 4
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-61 Score=441.88 Aligned_cols=316 Identities=21% Similarity=0.337 Sum_probs=256.4
Q ss_pred cCCCCcEEEEEecCCC-----CCCccccCCCCccEEEEEEEEEeCCCcEEE-------------------e-CCC--ChH
Q 041898 23 TRSPNWIRGGYWHAHS-----ELPIAEIHSALFSHLMCAFAFINSSTYNIF-------------------I-NST--SEQ 75 (355)
Q Consensus 23 ~~~~~~~~~~Y~~~~~-----~~~~~~~~~~~~thvi~~f~~~~~~~~~~~-------------------~-~~~--~~~ 75 (355)
...++.++++||++|+ .|.+.+||++++|||+|+|+.|++++.... . ++. -..
T Consensus 33 ~~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G 112 (441)
T COG3325 33 TSDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKG 112 (441)
T ss_pred CCCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccc
Confidence 3457789999999954 577899999999999999999999874211 0 001 123
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCc---chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC---------Cc
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGA---IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK---------GT 143 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~---~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~---------~~ 143 (355)
.+..+ +.+|+++|++|+++|||||+ .|+.++.+++.|++|+++++++|++|+|||||||||||++ +.
T Consensus 113 ~~~~L-~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~ 191 (441)
T COG3325 113 HFGAL-FDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK 191 (441)
T ss_pred hHHHH-HHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc
Confidence 34555 47999999999999999999 8999999999999999999999999999999999999964 57
Q ss_pred cHHHHHHHHHHHHc---------cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCC
Q 041898 144 NITKLGTLFDEWRA---------ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYS 214 (355)
Q Consensus 144 ~~~~~~~~l~~lr~---------~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~ 214 (355)
++++|+.||++||+ +++++||+|.|+.+..+. +.+..++.++|||||+|||||+|.| ..++||||||+.
T Consensus 192 d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~Gh~a~Ly~ 269 (441)
T COG3325 192 DKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETLGHHAALYG 269 (441)
T ss_pred cHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-cccccccccccc
Confidence 89999999999998 778999999999988887 7789999999999999999999997 789999999994
Q ss_pred cc------c-------------ccc--------cCceEEeceeeeeeeEecCCCCC----CCCCCccC--CCCC--CCCc
Q 041898 215 SS------R-------------WFN--------TNDTVLGLPYHGYAWTLVNPDEN----PVGSPATG--PAIT--IDGS 259 (355)
Q Consensus 215 ~~------~-------------~~~--------~~KlvlGlp~yG~~~~~~~~~~~----~~~~p~~~--~~~~--~~g~ 259 (355)
.. . |++ |+|||||+|+|||.|..++.... +..+.... ...+ ..+.
T Consensus 270 ~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~n 349 (441)
T COG3325 270 TPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGN 349 (441)
T ss_pred CCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccccc
Confidence 11 1 555 78999999999999998765442 22222221 1111 1111
Q ss_pred c--chH---HHH-HhhhcCCCceeEEEecCceeeEEE--eCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcc
Q 041898 260 V--GFK---FIK-GFIRDYGYGAASVYNHSYVMNFFS--AKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDDKWE 331 (355)
Q Consensus 260 ~--~y~---ei~-~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd~~~ 331 (355)
. .|. .+. +....++ +.+.||+..++||+| ..+.+|+|||++||+.|.+|+++++|||+|+|++++|-...
T Consensus 350 ~~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n~~ 427 (441)
T COG3325 350 GDKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDENGV 427 (441)
T ss_pred cCccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcchh
Confidence 1 221 221 1223344 899999999999999 66799999999999999999999999999999999998889
Q ss_pred hhhhcccccccc
Q 041898 332 LYSAEKQPADVG 343 (355)
Q Consensus 332 l~~~~~~~l~~~ 343 (355)
+++++++++.-.
T Consensus 428 llna~~~~l~~~ 439 (441)
T COG3325 428 LLNAVNEGLGFN 439 (441)
T ss_pred HHHHhhcccCCC
Confidence 999999988643
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=4.1e-60 Score=445.84 Aligned_cols=287 Identities=18% Similarity=0.244 Sum_probs=236.2
Q ss_pred EEEEEecCC------CCCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc-
Q 041898 29 IRGGYWHAH------SELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA- 101 (355)
Q Consensus 29 ~~~~Y~~~~------~~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~- 101 (355)
+++|||+.+ ..+.+++|+.++||||+|+|+.+++++ .+...+ ....+.++. .+| ++|||+|||||+
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KLK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hhc----CcEEEEEEeCCCC
Confidence 368999985 257899999999999999999999875 665543 344455554 343 399999999997
Q ss_pred --c------hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC----------CccHHHHHHHHHHHHc--cCCc
Q 041898 102 --I------FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK----------GTNITKLGTLFDEWRA--ESQL 161 (355)
Q Consensus 102 --~------~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~----------~~~~~~~~~~l~~lr~--~~~~ 161 (355)
. |+.++ +++.|++||+++++++++|+|||||||||+|.. ++|+++|+.||++||+ ++++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~~~ 152 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPSGK 152 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCcCc
Confidence 1 77777 999999999999999999999999999999853 3589999999999999 6689
Q ss_pred EEEEEeccCCcccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCC-------CCc------cc----ccc----
Q 041898 162 LLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSAL-------YSS------SR----WFN---- 220 (355)
Q Consensus 162 ~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl-------~~~------~~----~~~---- 220 (355)
+||+++|+.+... ..||++++.+++||||||+||+||+|. ..+++++|. ... .. |++
T Consensus 153 ~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~-~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~Gvp 230 (345)
T cd02878 153 SLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWD-YGNKWASPGCPAGNCLRSHVNKTETLDALSMITKAGVP 230 (345)
T ss_pred EEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcC-ccCCcCCCCCCcccccccCCCchhHHHHHHHHHHcCCC
Confidence 9999999876544 369999999999999999999999984 333333331 110 01 554
Q ss_pred cCceEEeceeeeeeeEecCCCCCCCCCCccCCCC--------CCCCccchHHHHHhh-hcCCCceeEEEecCceeeEE-E
Q 041898 221 TNDTVLGLPYHGYAWTLVNPDENPVGSPATGPAI--------TIDGSVGFKFIKGFI-RDYGYGAASVYNHSYVMNFF-S 290 (355)
Q Consensus 221 ~~KlvlGlp~yG~~~~~~~~~~~~~~~p~~~~~~--------~~~g~~~y~ei~~~~-~~~~~~~~~~~d~~~~~~y~-~ 290 (355)
|+||+||||+|||.|+++++.++++++|+.|++. ...+.+.|.|+|..+ ...+ ++..||+.+++||. +
T Consensus 231 ~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d~~~~~~y~~~ 308 (345)
T cd02878 231 SNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYDTDSDSDILVY 308 (345)
T ss_pred HHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEecCCCccEEEE
Confidence 9999999999999999999999999999987642 134555669999844 4455 89999999999987 5
Q ss_pred eCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEecCCC
Q 041898 291 AKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSND 327 (355)
Q Consensus 291 ~~~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 327 (355)
.+++||+|||++|++.|++|++++||||+|+|+|++|
T Consensus 309 ~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 309 DDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred cCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 6779999999999999999999999999999999987
No 6
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-60 Score=455.12 Aligned_cols=315 Identities=24% Similarity=0.432 Sum_probs=265.2
Q ss_pred EEEEEecCCC-CCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCC-c---ch
Q 041898 29 IRGGYWHAHS-ELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGG-A---IF 103 (355)
Q Consensus 29 ~~~~Y~~~~~-~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~-~---~~ 103 (355)
..+||+.... ...+.+++..+|||++|+|+.++.++..+...+.....+..+.+.+|..||++|+|+||||| . .|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns~~f 138 (432)
T KOG2806|consen 59 SIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNSGLF 138 (432)
T ss_pred eeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCccch
Confidence 4488888877 88899999999999999999999988666655555566777788999999999999999999 4 89
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-CCccHHHHHHHHHHHHc-----cC-----CcEEEEEeccC-C
Q 041898 104 SSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-KGTNITKLGTLFDEWRA-----ES-----QLLLVMTSHHL-P 171 (355)
Q Consensus 104 ~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-~~~~~~~~~~~l~~lr~-----~~-----~~~ls~a~~~~-~ 171 (355)
+.+++|++.|+.||+++++++++|+|||||||||||. .+.|+.+|..|++|||+ .+ ..+|+.++..+ .
T Consensus 139 s~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~~~v~~~~~ 218 (432)
T KOG2806|consen 139 SLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLEAVVADSKQ 218 (432)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceeeeccccCcc
Confidence 9999999999999999999999999999999999996 55899999999999999 11 12344444433 3
Q ss_pred cccccCCChhhhhccCcEEEEeeccCcCCCCCC-CCCCCCCCCCcc---c-----------ccc----cCceEEeceeee
Q 041898 172 ALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDN-FTGAHSALYSSS---R-----------WFN----TNDTVLGLPYHG 232 (355)
Q Consensus 172 ~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~-~~g~~apl~~~~---~-----------~~~----~~KlvlGlp~yG 232 (355)
+....+||+++|.+++||||||+|||+|+|... .+||+|||+... . |+. |+|++||+|+||
T Consensus 219 ~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip~yg 298 (432)
T KOG2806|consen 219 SAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLALPFYG 298 (432)
T ss_pred chhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEEEecce
Confidence 356778999999999999999999999998653 899999999641 1 664 899999999999
Q ss_pred eeeEecCCCCCCCCCCccCCCC------CCCCccchHHHHHhhhcCCCceeEEEecCceeeEEEe--CCEEEEeCCHHHH
Q 041898 233 YAWTLVNPDENPVGSPATGPAI------TIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSA--KTTWVNFDGVETI 304 (355)
Q Consensus 233 ~~~~~~~~~~~~~~~p~~~~~~------~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~v~ydd~~S~ 304 (355)
|.|++++...+ .+.+..+++. ..+|.++|.|||+...+.+ ...||+.+++||+|. +++||+|||++|+
T Consensus 299 ~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvtyen~~Si 374 (432)
T KOG2806|consen 299 RSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVTYENERSI 374 (432)
T ss_pred ehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEecCCHHHH
Confidence 99999987665 5544444332 2689999999999555443 689999999999998 9999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCCCCcc-hhhh-cccccccccccc
Q 041898 305 RSKVSFAKEKGLLGYHAFQLSNDDKWE-LYSA-EKQPADVGNYRE 347 (355)
Q Consensus 305 ~~K~~~~~~~gl~Gv~iW~l~~Dd~~~-l~~~-~~~~l~~~~~~~ 347 (355)
+.|++|+++++|||+++|.+++||+.+ +|++ ..+|+.+.+.+.
T Consensus 375 ~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~ 419 (432)
T KOG2806|consen 375 HIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLK 419 (432)
T ss_pred HHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeecccc
Confidence 999999999999999999999999655 5764 678788777543
No 7
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=8.3e-60 Score=444.14 Aligned_cols=290 Identities=29% Similarity=0.524 Sum_probs=252.4
Q ss_pred EEEEecCCC----CCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCCh--HHHHHHHHHHHhcCCCcEEEEEEcCCc--
Q 041898 30 RGGYWHAHS----ELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSE--QFFVIFTNTVKHRNPSVVTLLSIWGGA-- 101 (355)
Q Consensus 30 ~~~Y~~~~~----~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~lk~~~~~~kvllsiGG~~-- 101 (355)
++|||+++. .|.+++++.++||||+|+|+.++++| .+.+.+... ..+.++. .+|+++|++|+|++||||.
T Consensus 2 ~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~s 79 (334)
T smart00636 2 VVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTES 79 (334)
T ss_pred EEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCCC
Confidence 689999965 37899999999999999999999964 666554322 3566665 6899999999999999987
Q ss_pred -chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC-ccHHHHHHHHHHHHc--c------CCcEEEEEeccCC
Q 041898 102 -IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG-TNITKLGTLFDEWRA--E------SQLLLVMTSHHLP 171 (355)
Q Consensus 102 -~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~-~~~~~~~~~l~~lr~--~------~~~~ls~a~~~~~ 171 (355)
.|+.++.|++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||+ . ++++||+++|+.+
T Consensus 80 ~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v~~~~ 159 (334)
T smart00636 80 DNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGAEGKGYLLTIAVPAGP 159 (334)
T ss_pred cchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcccCCceEEEEEecCCh
Confidence 69999999999999999999999999999999999998753 678899999999999 2 4899999999876
Q ss_pred cccccCCC-hhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcc---------c----ccc----cCceEEeceeeee
Q 041898 172 ALESVSYP-LDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS---------R----WFN----TNDTVLGLPYHGY 233 (355)
Q Consensus 172 ~~~~~~yd-~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~---------~----~~~----~~KlvlGlp~yG~ 233 (355)
......|+ ++++.+++|+|+||+||++++| +..+||+|||+... . |++ |+||+||||+|||
T Consensus 160 ~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~-~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YG~ 238 (334)
T smart00636 160 DKIDKGYGDLPAIAKYLDFINLMTYDFHGAW-SNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGIPFYGR 238 (334)
T ss_pred HHHHhhhhhHHHHHhhCcEEEEeeeccCCCC-CCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEeeccccC
Confidence 65544688 5999999999999999999987 56899999997421 1 553 8999999999999
Q ss_pred eeEecCCCCCCCCCCccCCCC-----CCCCccchHHHHHhhhcCCCceeEEEecCceeeEEEe-C-CEEEEeCCHHHHHH
Q 041898 234 AWTLVNPDENPVGSPATGPAI-----TIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSA-K-TTWVNFDGVETIRS 306 (355)
Q Consensus 234 ~~~~~~~~~~~~~~p~~~~~~-----~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~v~ydd~~S~~~ 306 (355)
.|++.+..+.++++|+.|++. .++|.++|.|||+.. + +...||+.+++||.|. + ++||+|||++|++.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd~~Si~~ 313 (334)
T smart00636 239 GWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDDPRSIKA 313 (334)
T ss_pred ccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCCHHHHHH
Confidence 999998888888999877643 267899999999865 5 8999999999999995 4 59999999999999
Q ss_pred HHHHHHHcCCCEEEEEecCCC
Q 041898 307 KVSFAKEKGLLGYHAFQLSND 327 (355)
Q Consensus 307 K~~~~~~~gl~Gv~iW~l~~D 327 (355)
|++|++++||||+++|+|++|
T Consensus 314 K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 314 KADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999997
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.1e-58 Score=431.29 Aligned_cols=257 Identities=26% Similarity=0.437 Sum_probs=223.0
Q ss_pred EEEEecCCCCC----Ccc-ccCCCCccEEEEEEEEEeCCCcEEEeCC-------------------CChHHHHHHHHHHH
Q 041898 30 RGGYWHAHSEL----PIA-EIHSALFSHLMCAFAFINSSTYNIFINS-------------------TSEQFFVIFTNTVK 85 (355)
Q Consensus 30 ~~~Y~~~~~~~----~~~-~~~~~~~thvi~~f~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~lk 85 (355)
++|||++|..+ .+. +++.++||||+|+|+.+++++..+...+ .....+.++. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 48999996554 334 5899999999999999999876554321 1345567776 799
Q ss_pred hcCCCcEEEEEEcCCc---chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC---------CccHHHHHHHHH
Q 041898 86 HRNPSVVTLLSIWGGA---IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK---------GTNITKLGTLFD 153 (355)
Q Consensus 86 ~~~~~~kvllsiGG~~---~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~---------~~~~~~~~~~l~ 153 (355)
+++|++|||+|||||+ .|+.++++++.|++||+++++++++|+|||||||||+|.. ++++.+|+.||+
T Consensus 80 ~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~ 159 (322)
T cd06548 80 QKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLK 159 (322)
T ss_pred HhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHH
Confidence 9999999999999997 7999999999999999999999999999999999999975 578999999999
Q ss_pred HHHc---c------CCcEEEEEeccCCcccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcc--------
Q 041898 154 EWRA---E------SQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS-------- 216 (355)
Q Consensus 154 ~lr~---~------~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~-------- 216 (355)
+||+ . ++++||+++|+.+.... .++++++.++||+|+||+||++++| ...+|++|||+...
T Consensus 160 ~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w-~~~~g~~spL~~~~~~~~~~~~ 237 (322)
T cd06548 160 ELREALDALGAETGRKYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAW-SNTTGHHSNLYASPADPPGGYS 237 (322)
T ss_pred HHHHHHHHhhhccCCceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCC-CCCCCCCCCCCCCCCCCCCCcc
Confidence 9998 2 36999999998766554 5789999999999999999999997 57899999997521
Q ss_pred --c----ccc----cCceEEeceeeeeeeEecCCCCCCCCCCccCCCCCCCCccchHHHHHhhhcCCCceeEEEecCcee
Q 041898 217 --R----WFN----TNDTVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVM 286 (355)
Q Consensus 217 --~----~~~----~~KlvlGlp~yG~~~~~~~~~~~~~~~p~~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~ 286 (355)
. |+. |+||+||||+|||.|++ ++..||+.+.+
T Consensus 238 v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~~~~~ 279 (322)
T cd06548 238 VDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDEVAKA 279 (322)
T ss_pred HHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcCCcce
Confidence 1 443 99999999999999952 35789999999
Q ss_pred eEEEeC--CEEEEeCCHHHHHHHHHHHHHcCCCEEEEEecCCC
Q 041898 287 NFFSAK--TTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSND 327 (355)
Q Consensus 287 ~y~~~~--~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 327 (355)
||.+++ ++||+|||++|++.|++|++++||||+|+|++++|
T Consensus 280 ~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 280 PYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred eEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 999966 89999999999999999999999999999999997
No 9
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.3e-54 Score=405.16 Aligned_cols=281 Identities=18% Similarity=0.224 Sum_probs=226.9
Q ss_pred EEEEEecCCC--CCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEE--EEEcCCc--c
Q 041898 29 IRGGYWHAHS--ELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTL--LSIWGGA--I 102 (355)
Q Consensus 29 ~~~~Y~~~~~--~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl--lsiGG~~--~ 102 (355)
.++|||++|. .+.+.+++.++||||+|+|+.++++++.+...+..+.. ...++.+|+++|++||+ +++|||+ .
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~~~~ 82 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWSYQD 82 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCCHHH
Confidence 4689999955 46788899999999999999999987655544321111 22455789999999999 7779998 7
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEE-ccCCCC---CccHHHHHHHHHHHHc---cCCcEEEEEeccCCcc--
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLH-GVLPDK---GTNITKLGTLFDEWRA---ESQLLLVMTSHHLPAL-- 173 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiD-wE~~~~---~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~~-- 173 (355)
|+.+++|++.|++||+++++++++|+||||||| ||+|.. ++++.+|+.||++||+ ..++.+++++|+....
T Consensus 83 f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~~~~l~~~v~~~~~~~~ 162 (318)
T cd02876 83 LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSANLKLILVIPPPREKGN 162 (318)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEEcCcccccc
Confidence 999999999999999999999999999999999 999864 3589999999999999 5678899998865422
Q ss_pred ---cccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCccc----ccc-----cCceEEeceeeeeeeEecCCC
Q 041898 174 ---ESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSR----WFN-----TNDTVLGLPYHGYAWTLVNPD 241 (355)
Q Consensus 174 ---~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~----~~~-----~~KlvlGlp~yG~~~~~~~~~ 241 (355)
....||+++|++++|+|+||+||+|++ ..+||+||++.... |++ |+|||||||+|||.|++.+
T Consensus 163 ~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~~v~~~v~~~~~~~~vp~~KlvlGip~YG~~w~~~~-- 237 (318)
T cd02876 163 QNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLSWVRSCLELLLPESGKKRAKILLGLNFYGNDYTLPG-- 237 (318)
T ss_pred ccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcHHHHHHHHHHHhcCCCCHHHeEEeccccccccccCC--
Confidence 223589999999999999999999975 67999999983222 221 7899999999999997643
Q ss_pred CCCCCCCccCCCCCCCCccchHHHHHhhhcCCCceeEEEecCcee-eEEEeC---CEEEEeCCHHHHHHHHHHHHHcCCC
Q 041898 242 ENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVM-NFFSAK---TTWVNFDGVETIRSKVSFAKEKGLL 317 (355)
Q Consensus 242 ~~~~~~p~~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~-~y~~~~---~~~v~ydd~~S~~~K~~~~~~~gl~ 317 (355)
.+.| +++.+.++++++.+ ++..||+.++. +|.|.+ ++||||||++|++.|+++++++||
T Consensus 238 ---~~~~-----------~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si~~K~~~a~~~~l- 300 (318)
T cd02876 238 ---GGGA-----------ITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSIQLRLDLAKELGT- 300 (318)
T ss_pred ---CCce-----------eehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCCHHHHHHHHHHHHHcCC-
Confidence 1222 23345555555566 78999999655 477744 799999999999999999999999
Q ss_pred EEEEEecCCCC--Ccch
Q 041898 318 GYHAFQLSNDD--KWEL 332 (355)
Q Consensus 318 Gv~iW~l~~Dd--~~~l 332 (355)
|+|+|+|++++ ++.+
T Consensus 301 Gv~~W~lg~~~~~f~~~ 317 (318)
T cd02876 301 GISIWELGQGLDYFYDL 317 (318)
T ss_pred cEEEEcccCCchHHhhc
Confidence 99999999987 4443
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=2.8e-53 Score=401.17 Aligned_cols=295 Identities=25% Similarity=0.470 Sum_probs=245.7
Q ss_pred cEEEEEecCCCC-----CCccccCCCCccEEEEEEEEEeCCCcEEE-----eCC-CChHHHHHHHHHHHhcCCCcEEEEE
Q 041898 28 WIRGGYWHAHSE-----LPIAEIHSALFSHLMCAFAFINSSTYNIF-----INS-TSEQFFVIFTNTVKHRNPSVVTLLS 96 (355)
Q Consensus 28 ~~~~~Y~~~~~~-----~~~~~~~~~~~thvi~~f~~~~~~~~~~~-----~~~-~~~~~~~~~~~~lk~~~~~~kvlls 96 (355)
..++|||+.+.. +.+++++.+.||||+|+|+.++.++.... ... .....+..+ +.+|+++|++||++|
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 368999999543 66889999999999999999999876542 222 234444554 478899999999999
Q ss_pred EcCCc----chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC---ccHHHHHHHHHHHHc---c-----CCc
Q 041898 97 IWGGA----IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG---TNITKLGTLFDEWRA---E-----SQL 161 (355)
Q Consensus 97 iGG~~----~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~---~~~~~~~~~l~~lr~---~-----~~~ 161 (355)
|||+. .|..++.+++.|++|++++++++++|+|||||||||++... .++.+|..||++||+ . +++
T Consensus 80 igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~~~~ 159 (343)
T PF00704_consen 80 IGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSGKGY 159 (343)
T ss_dssp EEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHHSTS
T ss_pred eccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccccee
Confidence 99994 79999999999999999999999999999999999999763 589999999999997 2 389
Q ss_pred EEEEEeccCCcccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcc---------c----ccc----cCce
Q 041898 162 LLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSS---------R----WFN----TNDT 224 (355)
Q Consensus 162 ~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~---------~----~~~----~~Kl 224 (355)
+||+++|+.+.... .++++++.+++|||++|+||++++|. ..+++++|++... . |+. |+||
T Consensus 160 ~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p~~Kl 237 (343)
T PF00704_consen 160 ILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWS-DVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVPPSKL 237 (343)
T ss_dssp EEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTS-SBETTSSSSSHTTTSGTSSSHHHHHHHHHHTTSTGGGE
T ss_pred EEeecccccccccc-ccccccccccccccccccccCCCCcc-cccccccccccCCccCCCceeeeehhhhccccCChhhe
Confidence 99999998766444 45899999999999999999999874 4899999998432 0 443 9999
Q ss_pred EEeceeeeeeeEecCCCCCCCCCCc---cCCCCCCCCccchHHHHHhhhcCCCceeEEEecCceeeEEEeC--CEEEEeC
Q 041898 225 VLGLPYHGYAWTLVNPDENPVGSPA---TGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAK--TTWVNFD 299 (355)
Q Consensus 225 vlGlp~yG~~~~~~~~~~~~~~~p~---~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~~v~yd 299 (355)
+||+|+||+.|++.+.......++. .+.....++.++|.++|..++..+ +...||+.+++||.+.. ++||+||
T Consensus 238 ~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~~i~~e 315 (343)
T PF00704_consen 238 VLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKHWISYE 315 (343)
T ss_dssp EEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTEEEEE-
T ss_pred eecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCeEEEeC
Confidence 9999999999998887766555543 233445678999999999887777 89999999999999966 7999999
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEEecCCC
Q 041898 300 GVETIRSKVSFAKEKGLLGYHAFQLSND 327 (355)
Q Consensus 300 d~~S~~~K~~~~~~~gl~Gv~iW~l~~D 327 (355)
|++|++.|++|++++||||+++|+|++|
T Consensus 316 ~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 316 DPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 9999999999999999999999999997
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1e-51 Score=389.46 Aligned_cols=286 Identities=16% Similarity=0.194 Sum_probs=225.3
Q ss_pred CCCcEEEEEecCCCCCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCcchh
Q 041898 25 SPNWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFS 104 (355)
Q Consensus 25 ~~~~~~~~Y~~~~~~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~ 104 (355)
.+...++||.... ..-...+++++|||.++ + ..+ .+++..+|++ ++||+++ ++. . .
T Consensus 33 ~~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~----~~~~~~A~~~--~v~v~~~-~~~-~-~ 88 (358)
T cd02875 33 GPRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DID----DELLCYAHSK--GVRLVLK-GDV-P-L 88 (358)
T ss_pred CCceEEEEEEeCC--CcCcccccccceEEEec-------C------CCC----HHHHHHHHHc--CCEEEEE-Ccc-C-H
Confidence 3556789998764 33468899999999976 1 111 2355445544 8999987 332 2 3
Q ss_pred hhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC--CccHHHHHHHHHHHHc-----cCCcEEEEEeccCCcccccC
Q 041898 105 SMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK--GTNITKLGTLFDEWRA-----ESQLLLVMTSHHLPALESVS 177 (355)
Q Consensus 105 ~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~--~~~~~~~~~~l~~lr~-----~~~~~ls~a~~~~~~~~~~~ 177 (355)
..+.|++.|++||+++++++++|||||||||||+|.. +.++++|+.||++||+ +++++||++++..+.....+
T Consensus 89 ~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~~~~~Lsvav~~~p~~~~~~ 168 (358)
T cd02875 89 EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKENPGYQISFDVAWSPSCIDKR 168 (358)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccccccc
Confidence 4678999999999999999999999999999999964 4689999999999998 34799999999766554433
Q ss_pred -CChhhhhccCcEEEEeeccCcCC-CC-CCCCCCCCCCCCccc----ccc----cCceEEeceeeeeeeEecCCCC----
Q 041898 178 -YPLDSMQRNLDWIHVLNFDYYLP-TR-DNFTGAHSALYSSSR----WFN----TNDTVLGLPYHGYAWTLVNPDE---- 242 (355)
Q Consensus 178 -yd~~~l~~~vD~v~vm~YD~~~~-~~-~~~~g~~apl~~~~~----~~~----~~KlvlGlp~yG~~~~~~~~~~---- 242 (355)
||+++|++++|||+||+||+|++ |. ...+|++||+..... |+. |+|||||+|+|||+|++.+...
T Consensus 169 ~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~ 248 (358)
T cd02875 169 CYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVV 248 (358)
T ss_pred ccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHHHHcCCCHHHeEEEeCCCCCceeCCCCcccCcc
Confidence 99999999999999999999975 43 346899999974322 443 8999999999999999765431
Q ss_pred -CCCCCCccCCCC--CCCCccchHHHHHhhhcCCCceeEEEecCceeeEEE-e---CC-EEEEeCCHHHHHHHHHHHHHc
Q 041898 243 -NPVGSPATGPAI--TIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFS-A---KT-TWVNFDGVETIRSKVSFAKEK 314 (355)
Q Consensus 243 -~~~~~p~~~~~~--~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~-~---~~-~~v~ydd~~S~~~K~~~~~~~ 314 (355)
...+.|..|... ..++.++|.|||+.+++.+ +.+.||+.+++||.+ . +. +||||||++|++.|++|++++
T Consensus 249 ~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~ydD~~Si~~K~~~a~~~ 326 (358)
T cd02875 249 CTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWYDNPQSLSIKVAYAKNL 326 (358)
T ss_pred cCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 122334443321 1245789999999887776 789999999999974 2 22 799999999999999999999
Q ss_pred CCCEEEEEecCCCCCcchhhhc
Q 041898 315 GLLGYHAFQLSNDDKWELYSAE 336 (355)
Q Consensus 315 gl~Gv~iW~l~~Dd~~~l~~~~ 336 (355)
||||+++|+||+||+++.+.|.
T Consensus 327 gL~Gv~iW~ld~dD~~g~~~~~ 348 (358)
T cd02875 327 GLKGIGMWNGDLLDYSGLPIAE 348 (358)
T ss_pred CCCeEEEEeccccccCCCchhh
Confidence 9999999999999999887664
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=8e-51 Score=379.34 Aligned_cols=271 Identities=17% Similarity=0.276 Sum_probs=226.3
Q ss_pred EEEEEecCCCC--CCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc-----
Q 041898 29 IRGGYWHAHSE--LPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA----- 101 (355)
Q Consensus 29 ~~~~Y~~~~~~--~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~----- 101 (355)
.++||+.++.. +....-..+++|||++.++.+.++|. +... . ...+++.+|++ ++|++++|||+.
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~~--~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGT-LTGL--P---DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCC-CCCC--C---CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 47899998554 34555677899999999999999863 3221 1 23566666665 899999999973
Q ss_pred --chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc---cCCcEEEEEeccCCc----
Q 041898 102 --IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA---ESQLLLVMTSHHLPA---- 172 (355)
Q Consensus 102 --~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~---- 172 (355)
.++.++.|++.|++|++++++++++|+|||||||||++.. +++.+|+.||++||. .++++|++++++...
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~~~~~~~ 153 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQF 153 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccc
Confidence 6789999999999999999999999999999999998764 789999999999999 578899998876532
Q ss_pred -ccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccc-----------cCceEEeceeeeeeeEecCC
Q 041898 173 -LESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFN-----------TNDTVLGLPYHGYAWTLVNP 240 (355)
Q Consensus 173 -~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~-----------~~KlvlGlp~yG~~~~~~~~ 240 (355)
.+...||++++++++|+|+||+||++++| +.+||+||+. |++ ++||+||||+|||.|++.+.
T Consensus 154 ~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~gp~a~~~----~~~~~~~~~~~gvp~~KlvlGip~YG~~w~~~~~ 227 (313)
T cd02874 154 GNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPPGPVAPIG----WVERVLQYAVTQIPREKILLGIPLYGYDWTLPYK 227 (313)
T ss_pred cccccccCHHHHHhhCCEEEEEEeccCCCC--CCCCccCChH----HHHHHHHHHHhcCCHHHEEEeecccccccccCCC
Confidence 22346899999999999999999999985 5789999997 443 79999999999999986531
Q ss_pred CCCCCCCCccCCCCCCCCccchHHHHHhhhcCCCceeEEEecCceeeEEE-e----CCEEEEeCCHHHHHHHHHHHHHcC
Q 041898 241 DENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFS-A----KTTWVNFDGVETIRSKVSFAKEKG 315 (355)
Q Consensus 241 ~~~~~~~p~~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~-~----~~~~v~ydd~~S~~~K~~~~~~~g 315 (355)
. ....+.++|.|+|+++.+.+ +++.||+.+++||.. . ..+||+|||++|++.|+++++++|
T Consensus 228 ~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~~~~~~~ 293 (313)
T cd02874 228 K------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEYG 293 (313)
T ss_pred C------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHHHHHHcC
Confidence 1 11235788999999888888 899999999999764 2 258999999999999999999999
Q ss_pred CCEEEEEecCCCC
Q 041898 316 LLGYHAFQLSNDD 328 (355)
Q Consensus 316 l~Gv~iW~l~~Dd 328 (355)
|||+++|+|++||
T Consensus 294 lgGv~iW~lg~dD 306 (313)
T cd02874 294 LRGVSYWRLGLED 306 (313)
T ss_pred CCeEEEEECCCCC
Confidence 9999999999999
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=7.6e-47 Score=349.10 Aligned_cols=269 Identities=17% Similarity=0.204 Sum_probs=215.2
Q ss_pred EEEEecCCCCCCc--cccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc----ch
Q 041898 30 RGGYWHAHSELPI--AEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA----IF 103 (355)
Q Consensus 30 ~~~Y~~~~~~~~~--~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~----~~ 103 (355)
++|||..+..... .....+.+|||++.|+.+...++.+.... +.. ....++.+|+++|.++++.+++|+. .|
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~-d~~-~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~ 79 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFV-DPQ-GVAIIAAAKAHPKVLPLVQNISGGAWDGKNI 79 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccC-ChH-HHHHHHHHHcCCceeEEEEecCCCCCCHHHH
Confidence 6789988654333 33455789999999999986555665432 222 2233456788888899999998764 68
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc---cCCcEEEEEeccCCcccccCCCh
Q 041898 104 SSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA---ESQLLLVMTSHHLPALESVSYPL 180 (355)
Q Consensus 104 ~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~~~~~~yd~ 180 (355)
+.+++|++.|++||+++++++++|+|||||||||++.. +++++|+.||++||+ ..++.|++++|+.+. .||+
T Consensus 80 ~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~~~~lsv~v~~~~~----~~d~ 154 (298)
T cd06549 80 ARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQGKQLTVTVPADEA----DWNL 154 (298)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCC----CCCH
Confidence 99999999999999999999999999999999998754 789999999999999 558999999997542 5899
Q ss_pred hhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccc-----------cCceEEeceeeeeeeEecCCCCCCCCCCc
Q 041898 181 DSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFN-----------TNDTVLGLPYHGYAWTLVNPDENPVGSPA 249 (355)
Q Consensus 181 ~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~-----------~~KlvlGlp~yG~~~~~~~~~~~~~~~p~ 249 (355)
+++.+++|+|+||+||+|+++ ..+||.+|.. |++ ++||+||||+|||+|++.+. +
T Consensus 155 ~~l~~~~D~v~lMtYD~~~~~--~~~gp~a~~~----~~~~~~~~~~~~vp~~KlvlGip~YG~~w~~~~~-----~--- 220 (298)
T cd06549 155 KALARNADKLILMAYDEHYQG--GAPGPIASQD----WFESNLAQAVKKLPPEKLIVALGSYGYDWTKGGN-----T--- 220 (298)
T ss_pred HHHHHhCCEEEEEEeccCCCC--CCCCCCCChh----hHHHHHHHHHhCCCHHHEEEEecccCccccCCCC-----C---
Confidence 999999999999999999874 4678888877 643 89999999999999975321 1
Q ss_pred cCCCCCCCCccchHHHHHhhhcCCCceeEEEecCceee-EEE-e---CCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEec
Q 041898 250 TGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMN-FFS-A---KTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQL 324 (355)
Q Consensus 250 ~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~-y~~-~---~~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l 324 (355)
..++..+...++.+.+ ..+.||++...| |.+ + ..|+|||||++|++.|+++++++||+|+++|+|
T Consensus 221 --------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~l~Gva~W~l 290 (298)
T cd06549 221 --------KAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLGPAGVALWRL 290 (298)
T ss_pred --------cccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcCCCcEEEEec
Confidence 1234455555555566 678898877666 555 2 247999999999999999999999999999999
Q ss_pred CCCCC
Q 041898 325 SNDDK 329 (355)
Q Consensus 325 ~~Dd~ 329 (355)
|+||+
T Consensus 291 g~ed~ 295 (298)
T cd06549 291 GSEDP 295 (298)
T ss_pred cCCCC
Confidence 99985
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.4e-45 Score=333.63 Aligned_cols=234 Identities=25% Similarity=0.383 Sum_probs=194.5
Q ss_pred EEEEecCCCCCC--ccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc--chhh
Q 041898 30 RGGYWHAHSELP--IAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA--IFSS 105 (355)
Q Consensus 30 ~~~Y~~~~~~~~--~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~--~~~~ 105 (355)
++|||++|.... +++++.++||||+++|+.++++| .+...+. ...+..+++.+|+ +++||++|||||. .+..
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~~~~~~ 76 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSPPEFTA 76 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCCCcchh
Confidence 589999987654 78999999999999999999976 5555432 3345566666665 4899999999987 6778
Q ss_pred hhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc---cCCcEEEEEeccCCcccccCCChhh
Q 041898 106 MINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA---ESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 106 ~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||+ ..+++||+++++... .+...+
T Consensus 77 ~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~~~~lt~av~~~~~----~~~~~~ 150 (253)
T cd06545 77 ALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKEGKLLTAAVSSWNG----GAVSDS 150 (253)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhcCcEEEEEccCccc----ccccHH
Confidence 9999999999999999999999999999999998763 7899999999999 457899999986432 122367
Q ss_pred hhccCcEEEEeeccCcCCCCCCCCCCCCCCCCccc----ccc-----cCceEEeceeeeeeeEecCCCCCCCCCCccCCC
Q 041898 183 MQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSR----WFN-----TNDTVLGLPYHGYAWTLVNPDENPVGSPATGPA 253 (355)
Q Consensus 183 l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~----~~~-----~~KlvlGlp~yG~~~~~~~~~~~~~~~p~~~~~ 253 (355)
+.+++|+|+||+||++|+|....++|++|+..... |+. ++||+||||+|||.|
T Consensus 151 ~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w------------------ 212 (253)
T cd06545 151 TLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNERGLASKDKLVLGLPFYGYGF------------------ 212 (253)
T ss_pred HHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHHcCCCCHHHEEEEeCCccccc------------------
Confidence 78999999999999999986667899999874322 432 899999999999988
Q ss_pred CCCCCccchHHHHHhhhcCCCceeEEEecCceeeEEEeCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEecCCCC--Ccc
Q 041898 254 ITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSNDD--KWE 331 (355)
Q Consensus 254 ~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~Dd--~~~ 331 (355)
+|+++.+++.|+++++++ +||+|+|++++|. ..+
T Consensus 213 -------------------------------------------~~~~~~~~~~~~~~~~~~-~gG~~~w~~~~d~~~~~~ 248 (253)
T cd06545 213 -------------------------------------------YYNGIPTIRNKVAFAKQN-YGGVMIWELSQDASGENS 248 (253)
T ss_pred -------------------------------------------cCCCHHHHHHHHHHHHHh-cCeEEEEeccCCCCCCcc
Confidence 166778999999999999 9999999999997 456
Q ss_pred hhhh
Q 041898 332 LYSA 335 (355)
Q Consensus 332 l~~~ 335 (355)
|+.+
T Consensus 249 l~~~ 252 (253)
T cd06545 249 LLNA 252 (253)
T ss_pred hhhc
Confidence 6654
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=4.2e-37 Score=270.91 Aligned_cols=200 Identities=25% Similarity=0.371 Sum_probs=166.2
Q ss_pred EEEEecCCCCCC---ccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc--chh
Q 041898 30 RGGYWHAHSELP---IAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA--IFS 104 (355)
Q Consensus 30 ~~~Y~~~~~~~~---~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~--~~~ 104 (355)
++|||..+.... +..++.+.||||+++|+.+++++......+.........++.+|+++|++||++||||+. ...
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~ 80 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPF 80 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc
Confidence 479999965544 478899999999999999999875443122222233334457888889999999999987 222
Q ss_pred hhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCc--cHHHHHHHHHHHHc--c-CCcEEEEEeccCCcccccCCC
Q 041898 105 SMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGT--NITKLGTLFDEWRA--E-SQLLLVMTSHHLPALESVSYP 179 (355)
Q Consensus 105 ~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~--~~~~~~~~l~~lr~--~-~~~~ls~a~~~~~~~~~~~yd 179 (355)
.++.+++.|++|++++++++++|+|||||||||+|.... ++++|+.|+++||+ + .+++||+++|+.+......|+
T Consensus 81 ~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~~~~~ 160 (210)
T cd00598 81 TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYD 160 (210)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhhccCC
Confidence 789999999999999999999999999999999987643 58999999999999 3 489999999987655443589
Q ss_pred hhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccccCceEEeceeeeeeeEecCCCCCCCCCCccCCCCCCCCc
Q 041898 180 LDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFNTNDTVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGS 259 (355)
Q Consensus 180 ~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~~~KlvlGlp~yG~~~~~~~~~~~~~~~p~~~~~~~~~g~ 259 (355)
++++.+++|++++|+|| |++|+|+|
T Consensus 161 ~~~l~~~vD~v~vm~Yd---------------------------l~~g~~~~---------------------------- 185 (210)
T cd00598 161 VPAIGDYVDFVNVMTYD---------------------------LVLGVPFY---------------------------- 185 (210)
T ss_pred HHHHHhhCCEEEEeeec---------------------------ccccchhh----------------------------
Confidence 99999999999999999 35677766
Q ss_pred cchHHHHHhhhcCCCceeEEEecCceeeEEEeCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEecCCC
Q 041898 260 VGFKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHAFQLSND 327 (355)
Q Consensus 260 ~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~v~ydd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 327 (355)
|++.|+++++++++||+|+|++++|
T Consensus 186 -------------------------------------------s~~~k~~~~~~~~~gGv~~w~~~~d 210 (210)
T cd00598 186 -------------------------------------------SLGAKAKYAKQKGLGGVMIWELDQD 210 (210)
T ss_pred -------------------------------------------hHHHHHHHHHHcCCceEEEEeccCC
Confidence 7899999999999999999999987
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=2.8e-35 Score=269.94 Aligned_cols=207 Identities=16% Similarity=0.308 Sum_probs=176.3
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc---cCCcEEEEEeccCCc-----cc
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA---ESQLLLVMTSHHLPA-----LE 174 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~-----~~ 174 (355)
.+.++.|+..+.++++++++.++++|+.|+.||+|.... .|++.|..|+|++|. +.++.+++|+++... .|
T Consensus 182 a~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~-~DR~~yt~flR~~r~~l~~~G~~~siAvaakt~~~~~G~W 260 (423)
T COG3858 182 AQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGP-GDRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSW 260 (423)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCH-HHHHHHHHHHHHHHHHhccCCeEEEEEecCCCCCCcCccc
Confidence 589999999999999999999999999999999997654 999999999999999 777999999998643 34
Q ss_pred ccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccc-----------cCceEEeceeeeeeeEecCCCCC
Q 041898 175 SVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFN-----------TNDTVLGLPYHGYAWTLVNPDEN 243 (355)
Q Consensus 175 ~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~-----------~~KlvlGlp~yG~~~~~~~~~~~ 243 (355)
...||+.++++.+|+|.+|+||.|..| +.+|+.||+. |++ ++||+||+|+||++|.+..+..
T Consensus 261 ~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~PG~vA~i~----~vr~~ieya~T~iP~~Kv~mGip~YGYDW~~~y~~~- 333 (423)
T COG3858 261 HGAYDYVALGKIADFVILMTYDWHYSG--GPPGPVASIG----WVRKVIEYALTVIPAEKVMMGIPLYGYDWTLPYDPL- 333 (423)
T ss_pred cchhhhhhhceeeeEEEEEEeccCcCC--CCCCcccCch----hHhhhhhhhheecchHHeEEccccccccccCCCCCC-
Confidence 556899999999999999999999775 7899999999 765 9999999999999997643221
Q ss_pred CCCCCccCCCCCCCCccchHHHHHhhhcCCCceeEEEecCceeeEEE----eC-CEEEEeCCHHHHHHHHHHHHHcCCCE
Q 041898 244 PVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFFS----AK-TTWVNFDGVETIRSKVSFAKEKGLLG 318 (355)
Q Consensus 244 ~~~~p~~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~~----~~-~~~v~ydd~~S~~~K~~~~~~~gl~G 318 (355)
|..+ .. ++.++...+.+..+ .++.||..+++||.+ ++ +|+|||||.+|+..|.+++|++||.|
T Consensus 334 --g~~~-------~a-~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~G 401 (423)
T COG3858 334 --GYLA-------RA-ISPDEAIDIANRYN--ATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRG 401 (423)
T ss_pred --ccee-------ee-cCcchhhhhhcccC--CccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCce
Confidence 1111 11 45555455555555 889999999999877 33 68999999999999999999999999
Q ss_pred EEEEecCCCCC
Q 041898 319 YHAFQLSNDDK 329 (355)
Q Consensus 319 v~iW~l~~Dd~ 329 (355)
|++|.|+++|+
T Consensus 402 Vs~W~Lg~e~p 412 (423)
T COG3858 402 VSYWVLGQEDP 412 (423)
T ss_pred EEEEEecCcch
Confidence 99999999994
No 17
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=2.4e-32 Score=244.70 Aligned_cols=190 Identities=13% Similarity=0.089 Sum_probs=133.9
Q ss_pred CCCccccCCCC--ccEEEEEEEE-EeC----CCcEEEeCCCCh-HHHHHHHHHHHhcCCCcEEEEEEcCCc-chhhhhcC
Q 041898 39 ELPIAEIHSAL--FSHLMCAFAF-INS----STYNIFINSTSE-QFFVIFTNTVKHRNPSVVTLLSIWGGA-IFSSMINQ 109 (355)
Q Consensus 39 ~~~~~~~~~~~--~thvi~~f~~-~~~----~~~~~~~~~~~~-~~~~~~~~~lk~~~~~~kvllsiGG~~-~~~~~~~~ 109 (355)
..+++++|.+. ||||||+|+. .+. .++.+...+.+. ..+.++. .+|+++|++|||+|||||. ..+.+..+
T Consensus 12 ~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lK~~~p~lKvllSiGG~~~~~~~~~~~ 90 (253)
T cd06544 12 GVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVK-SIKAQHPNVKVVISIGGRGVQNNPTPFD 90 (253)
T ss_pred CccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHH-HHHHhCCCcEEEEEeCCCCCCCCccccC
Confidence 34688999887 9999999993 332 134454444433 3445554 8999999999999999998 33333444
Q ss_pred cH----HHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc---cCCcEEEEEeccCCcccccCCChhh
Q 041898 110 SS----NRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA---ESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 110 ~~----~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
+. .|++|+++++++|++|||||||||||+|. .++.+|+.|+++||+ ..++++.+++.+..... ..+.++.
T Consensus 91 ~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~~-~~~y~~~ 167 (253)
T cd06544 91 PSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNNGVIKVASIAPSEDAE-QSHYLAL 167 (253)
T ss_pred chhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcccc-ccccHHH
Confidence 43 45566999999999999999999999984 578999999999999 34444334344333221 2445888
Q ss_pred hhccCcEEEEeeccCcCCCCCCCCCCCCCCCCc-ccccc---cCceEEeceeeeeee
Q 041898 183 MQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSS-SRWFN---TNDTVLGLPYHGYAW 235 (355)
Q Consensus 183 l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~-~~~~~---~~KlvlGlp~yG~~~ 235 (355)
+.+++|+|++|+||+++.+. + ...+.+... ..|.. ++||++|+|.+++.|
T Consensus 168 ~~~~~d~id~~~~qfy~~~~-~--~~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 168 YNAYGDYIDYVNYQFYNYGV-P--TTVAKYVEFYDEVANNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred HHHhhCceeEEEhhhhCCCC-C--CCHHHHHHHHHHHHhCCCcccEEEEEecCCCcc
Confidence 89999999999999998642 1 111111100 00433 999999999999876
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=1.4e-31 Score=241.18 Aligned_cols=187 Identities=16% Similarity=0.256 Sum_probs=137.6
Q ss_pred EEEEEecCCCC--------CCccccCCCCccEEEEEEEEEeCCCcEEEeCCC--Ch----HHHHHHHHHHHhcCCCcEEE
Q 041898 29 IRGGYWHAHSE--------LPIAEIHSALFSHLMCAFAFINSSTYNIFINST--SE----QFFVIFTNTVKHRNPSVVTL 94 (355)
Q Consensus 29 ~~~~Y~~~~~~--------~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~--~~----~~~~~~~~~lk~~~~~~kvl 94 (355)
+++|||..++. +++..++..+||||+|+|+.++.+| .+.+.+. +. ....++ +.+| ++++|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i-~~~~--~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTEL-AILQ--SSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHH-HHHH--hCCCEEE
Confidence 36899987421 2233456789999999999999975 6666543 11 223333 2454 5799999
Q ss_pred EEEcCCc--chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc--cCCcEEEEEeccC
Q 041898 95 LSIWGGA--IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA--ESQLLLVMTSHHL 170 (355)
Q Consensus 95 lsiGG~~--~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~--~~~~~ls~a~~~~ 170 (355)
+|||||. .|+.++++++.|++|++++++++++|+|||||||||+|. +..+|+.|+++||+ +++++||+++++.
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~~~~~lT~Ap~~~ 153 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFGPDFIITLAPVAS 153 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 9999997 788888899999999999999999999999999999985 35799999999998 7789999987643
Q ss_pred C----cccccCCChhhhh----ccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccc----cCceEEecee
Q 041898 171 P----ALESVSYPLDSMQ----RNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFN----TNDTVLGLPY 230 (355)
Q Consensus 171 ~----~~~~~~yd~~~l~----~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~----~~KlvlGlp~ 230 (355)
. .....++++.++. .++||+|+|.||.++.- ... ..-..|++ ++||++|+|.
T Consensus 154 ~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~-~~~-------~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 154 ALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSM-SSP-------SDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred cccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCc-cCH-------HHHHHHHHcCCCcccEEEEEec
Confidence 1 1112246777765 49999999999976541 110 00000332 8999999985
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=4e-29 Score=232.35 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=127.0
Q ss_pred cEEEEEecCCCCCC-----ccccCCCCccEEEEEEEEEeCCCc-EEEe------CCCChHHHHHHHHHHHhcCCCcEEEE
Q 041898 28 WIRGGYWHAHSELP-----IAEIHSALFSHLMCAFAFINSSTY-NIFI------NSTSEQFFVIFTNTVKHRNPSVVTLL 95 (355)
Q Consensus 28 ~~~~~Y~~~~~~~~-----~~~~~~~~~thvi~~f~~~~~~~~-~~~~------~~~~~~~~~~~~~~lk~~~~~~kvll 95 (355)
++++|||++|.... +.+...+.||||+++|+.+++++. .+.+ .......+.+.++.+|++ ++|||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEEE
Confidence 36799999854332 223445899999999999987642 2221 112334455555567765 799999
Q ss_pred EEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC----ccHHHHHHHHHHHHc--cCCcEEEEEecc
Q 041898 96 SIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG----TNITKLGTLFDEWRA--ESQLLLVMTSHH 169 (355)
Q Consensus 96 siGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~----~~~~~~~~~l~~lr~--~~~~~ls~a~~~ 169 (355)
|||||.. +..+.+++.|++|++++++++++|+|||||||||+|... .++.+|+.||++||+ +++++||+|+.+
T Consensus 79 SiGG~~~-~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~~~~lT~AP~~ 157 (312)
T cd02871 79 SIGGANG-HVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGPNFILTMAPET 157 (312)
T ss_pred EEeCCCC-ccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 9999972 224678899999999999999999999999999998653 477999999999998 678999999654
Q ss_pred CCcc--------cccCC--ChhhhhccCcEEEEeeccCcCC
Q 041898 170 LPAL--------ESVSY--PLDSMQRNLDWIHVLNFDYYLP 200 (355)
Q Consensus 170 ~~~~--------~~~~y--d~~~l~~~vD~v~vm~YD~~~~ 200 (355)
.... ....| .+.++.+++|+++||+||.++.
T Consensus 158 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~ 198 (312)
T cd02871 158 PYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGM 198 (312)
T ss_pred ccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCc
Confidence 3111 11123 3678888999999999998764
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=6.5e-26 Score=199.36 Aligned_cols=271 Identities=13% Similarity=0.202 Sum_probs=202.7
Q ss_pred EEEEEecCC--CCCCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEE--cCCc--c
Q 041898 29 IRGGYWHAH--SELPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSI--WGGA--I 102 (355)
Q Consensus 29 ~~~~Y~~~~--~~~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsi--GG~~--~ 102 (355)
.+.||..+| .+|....+-.+++|||.+.|+.+...|..+...... +.-+.+++++|+++++++++.-+ -.|. .
T Consensus 80 ~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~h-did~gwiralRk~~~~l~ivPR~~fd~~~~~d 158 (392)
T KOG2091|consen 80 TVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKH-DIDPGWIRALRKSGKDLHIVPRFYFDEFTSAD 158 (392)
T ss_pred ceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecc-cCChHHHHHHHHhCCCceeeceehhhhccchH
Confidence 468999985 568999999999999999999998776444333221 11233566889999999987443 3444 7
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEE-ccCCCC-CccH--HHHH-HHHHHHHccCCcEEEEEeccCCcc--cc
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLH-GVLPDK-GTNI--TKLG-TLFDEWRAESQLLLVMTSHHLPAL--ES 175 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiD-wE~~~~-~~~~--~~~~-~~l~~lr~~~~~~ls~a~~~~~~~--~~ 175 (355)
+..++.+++.|++..+.+++++++++|||+.|+ |....+ -.++ -.++ .+.++|+ ...++.-+++|+.... .+
T Consensus 159 ~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lh-kq~l~~iLvvPp~~~~e~~~ 237 (392)
T KOG2091|consen 159 LKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALH-KQELQAILVVPPVIEEENGQ 237 (392)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhheEEEEEeCCCCcCCCCC
Confidence 888999999999999999999999999999998 432221 1121 1222 3444444 5566677777763222 11
Q ss_pred cC----CChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccc------------cCceEEeceeeeeeeEecC
Q 041898 176 VS----YPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFN------------TNDTVLGLPYHGYAWTLVN 239 (355)
Q Consensus 176 ~~----yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~------------~~KlvlGlp~yG~~~~~~~ 239 (355)
.. -+++.|.+.+|.+.+||||+.+. ..+|++||+. |+. +.||++||.|||.+|.+.+
T Consensus 238 ~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~----wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gd 310 (392)
T KOG2091|consen 238 LKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE----WIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGD 310 (392)
T ss_pred cCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH----HHHHHHHHhCCccccccceeEeeeccccccccCC
Confidence 11 16788999999999999999874 5789999999 986 5799999999999996411
Q ss_pred CCCCCCCCCccCCCCCCCCccchHHHHHhhhcCCCceeEEEecCceeeEE-E----eCCEEEEeCCHHHHHHHHHHHHHc
Q 041898 240 PDENPVGSPATGPAITIDGSVGFKFIKGFIRDYGYGAASVYNHSYVMNFF-S----AKTTWVNFDGVETIRSKVSFAKEK 314 (355)
Q Consensus 240 ~~~~~~~~p~~~~~~~~~g~~~y~ei~~~~~~~~~~~~~~~d~~~~~~y~-~----~~~~~v~ydd~~S~~~K~~~~~~~ 314 (355)
| .+.++-..-..+++... ....||+++...+. | ++++.|.|.+..|+..++++|++.
T Consensus 311 -----------g-----~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~ 372 (392)
T KOG2091|consen 311 -----------G-----GEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELRIELAREL 372 (392)
T ss_pred -----------C-----CCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHhHHHHHHHHHHh
Confidence 1 13456666666776666 78899999977754 4 458999999999999999999999
Q ss_pred CCCEEEEEecCCC
Q 041898 315 GLLGYHAFQLSND 327 (355)
Q Consensus 315 gl~Gv~iW~l~~D 327 (355)
|. |++||++||-
T Consensus 373 gv-gISIWe~GqG 384 (392)
T KOG2091|consen 373 GV-GISIWEYGQG 384 (392)
T ss_pred CC-ceEeeeccCc
Confidence 96 8999999986
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.93 E-value=3.3e-24 Score=194.40 Aligned_cols=189 Identities=13% Similarity=0.114 Sum_probs=132.8
Q ss_pred EEEEEecCCCC------CCccccCCCCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc-
Q 041898 29 IRGGYWHAHSE------LPIAEIHSALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA- 101 (355)
Q Consensus 29 ~~~~Y~~~~~~------~~~~~~~~~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~- 101 (355)
+.+|||..+.+ ..+.+++ +.++.|++....++.++... .........+.++.+|++ ++||++||||+.
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~~ 76 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNHL 76 (255)
T ss_pred eEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCCC
Confidence 67899998764 3444555 56888888555544332100 011123344555566655 899999999987
Q ss_pred --chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC------CccHHHHHHHHHHHHc--cC-CcEEEEEeccC
Q 041898 102 --IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK------GTNITKLGTLFDEWRA--ES-QLLLVMTSHHL 170 (355)
Q Consensus 102 --~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~------~~~~~~~~~~l~~lr~--~~-~~~ls~a~~~~ 170 (355)
.| ....+++.|++|++++++++++|+|||||||||++.. +.+.++|..|+++||+ ++ +++|+++.++.
T Consensus 77 ~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~~kllt~~~~~~ 155 (255)
T cd06542 77 GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTIDGYGQ 155 (255)
T ss_pred CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 33 2456778999999999999999999999999998864 2478899999999999 44 89999998865
Q ss_pred CcccccCCChhhhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccccCceEEeceeeee
Q 041898 171 PALESVSYPLDSMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFNTNDTVLGLPYHGY 233 (355)
Q Consensus 171 ~~~~~~~yd~~~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~~~KlvlGlp~yG~ 233 (355)
.... +.+++.+++||+++|+||.++.- ..+ ..+... .-+.++|+++|+++++.
T Consensus 156 ~~~~----~~~~~~~~vDyv~~~~y~~~~~~--~~~-~~~~~~---~g~~~~k~i~~~~~~~~ 208 (255)
T cd06542 156 ALSN----DGEEVSPYVDYVIYQYYGSSSSS--TQR-NWNTNS---PKIPPEKMVYTESFEEE 208 (255)
T ss_pred chhc----CHHHHHHhCCEEEeeccCCCCcc--CCc-cccccc---CCCCHHHceeeeeeecc
Confidence 4321 67899999999999999865431 111 000000 01118999999999864
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.91 E-value=1.8e-23 Score=190.01 Aligned_cols=189 Identities=15% Similarity=0.126 Sum_probs=126.1
Q ss_pred EEEEecCCC--CCCccccCCCCccEEEEEEEEEeCCCcE--EEeCCCC-------hHHHHHHHHHHHhcCCCcEEEEEEc
Q 041898 30 RGGYWHAHS--ELPIAEIHSALFSHLMCAFAFINSSTYN--IFINSTS-------EQFFVIFTNTVKHRNPSVVTLLSIW 98 (355)
Q Consensus 30 ~~~Y~~~~~--~~~~~~~~~~~~thvi~~f~~~~~~~~~--~~~~~~~-------~~~~~~~~~~lk~~~~~~kvllsiG 98 (355)
++.||.... .-.-+-++...++-|+++|+..-++++. +.+.... -..+.+-++.+++ +++|||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~--~G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQS--KGKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHH--CCCEEEEEcc
Confidence 577887633 1222334556799999999988765322 2332221 1244555555665 4899999999
Q ss_pred CCc-chhhhhcCcHHHHHHHHHHHHHH------------HcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc------cC
Q 041898 99 GGA-IFSSMINQSSNRKSFIKSSVEMA------------RFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA------ES 159 (355)
Q Consensus 99 G~~-~~~~~~~~~~~r~~fi~~i~~~l------------~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~------~~ 159 (355)
||. .++. .+++.|++|++++.++. .+++|||||||||+|.. .+|..|+++||+ ++
T Consensus 81 G~~~~~~~--~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~~~~ 154 (280)
T cd02877 81 GAGGSYSL--SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASDPSK 154 (280)
T ss_pred CCCCCcCC--CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhcccCC
Confidence 998 3332 77889999999998775 25789999999999864 679999999998 26
Q ss_pred CcEEEEEeccCCcccccCCChhhhh-ccCcEEEEeeccCcCCCCCCCCCCCCCCCC-cccccc---c---CceEEeceee
Q 041898 160 QLLLVMTSHHLPALESVSYPLDSMQ-RNLDWIHVLNFDYYLPTRDNFTGAHSALYS-SSRWFN---T---NDTVLGLPYH 231 (355)
Q Consensus 160 ~~~ls~a~~~~~~~~~~~yd~~~l~-~~vD~v~vm~YD~~~~~~~~~~g~~apl~~-~~~~~~---~---~KlvlGlp~y 231 (355)
+++||+|+++.. ...+....+. .++|+++||+||..+. ....+.++.... -..|.. + .||+||+|..
T Consensus 155 ~~~LTaAPq~~~---~d~~~~~~i~~~~~D~i~vqfYn~~~c--~~~~~~~~~~~~~~~~w~~~~~~~~~~kv~lGlpas 229 (280)
T cd02877 155 KYYLTAAPQCPY---PDASLGDAIATGLFDFIFVQFYNNPCC--SYASGNASGFNFNWDTWTSWAKATSNAKVFLGLPAS 229 (280)
T ss_pred ceEEEeccccCC---cchhHHHHHccCccCEEEEEEecCccc--cccccccchhhhHHHHHHHhcccCCCceEEEecccC
Confidence 799999977631 2234455665 4999999999997643 111111111111 011554 3 7999999965
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.88 E-value=1.9e-22 Score=184.52 Aligned_cols=150 Identities=11% Similarity=0.098 Sum_probs=116.8
Q ss_pred CCCCccEEEEEEEEEeCCCcEEEeCCC---C-hHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHH
Q 041898 46 HSALFSHLMCAFAFINSSTYNIFINST---S-EQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSV 121 (355)
Q Consensus 46 ~~~~~thvi~~f~~~~~~~~~~~~~~~---~-~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~ 121 (355)
....|+||+++|+....+ ++..+... + ...+..-++.+|++ ++||++|+|||.. ..+..+...|++|++++.
T Consensus 22 ~~~g~~~v~lAFi~~~~~-~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g-~~~~~~~~~~~~~~~a~~ 97 (294)
T cd06543 22 AATGVKAFTLAFIVASGG-CKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG-TPLATSCTSADQLAAAYQ 97 (294)
T ss_pred HHcCCCEEEEEEEEcCCC-CcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC-CccccCcccHHHHHHHHH
Confidence 346899999999988754 34444332 1 23334444578887 6899999999971 223347789999999999
Q ss_pred HHHHcCCCCEEEEEccCCCCCcc---HHHHHHHHHHHHc-cCCcEEEEEeccCCcccc-cCCChhhhhc----cCcEEEE
Q 041898 122 EMARFNGFHGLDLHGVLPDKGTN---ITKLGTLFDEWRA-ESQLLLVMTSHHLPALES-VSYPLDSMQR----NLDWIHV 192 (355)
Q Consensus 122 ~~l~~~~~DGIdiDwE~~~~~~~---~~~~~~~l~~lr~-~~~~~ls~a~~~~~~~~~-~~yd~~~l~~----~vD~v~v 192 (355)
+++++|+|||||||||++.. .+ ..++..+|++|++ .+++.||+++|..+..+. .++++-+.++ .+|+|||
T Consensus 98 ~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~VNi 176 (294)
T cd06543 98 KVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDTVNI 176 (294)
T ss_pred HHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCCCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcceeee
Confidence 99999999999999999864 44 4788999999998 778999999998765444 4567777777 8999999
Q ss_pred eeccCcCC
Q 041898 193 LNFDYYLP 200 (355)
Q Consensus 193 m~YD~~~~ 200 (355)
|+|||++.
T Consensus 177 MtmDyg~~ 184 (294)
T cd06543 177 MTMDYGSS 184 (294)
T ss_pred eeecCCCC
Confidence 99999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=2e-15 Score=129.81 Aligned_cols=172 Identities=15% Similarity=0.190 Sum_probs=107.3
Q ss_pred CCCCcEEEEEecCCCC--------CCccccCC----CCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCc
Q 041898 24 RSPNWIRGGYWHAHSE--------LPIAEIHS----ALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSV 91 (355)
Q Consensus 24 ~~~~~~~~~Y~~~~~~--------~~~~~~~~----~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~ 91 (355)
..+..+.+|||.+|.. -+..+|.. +.+..+-.+|..-.++=..+......+..++.-+..|.++ +.
T Consensus 22 ~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae--Gk 99 (332)
T COG3469 22 DISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE--GK 99 (332)
T ss_pred ccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--Cc
Confidence 4455689999998321 12222222 3344555666544332111222222334555555566655 78
Q ss_pred EEEEEEcCCc-chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC--CccHHHHHHHHHHHHc-----cCCcEE
Q 041898 92 VTLLSIWGGA-IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK--GTNITKLGTLFDEWRA-----ESQLLL 163 (355)
Q Consensus 92 kvllsiGG~~-~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~--~~~~~~~~~~l~~lr~-----~~~~~l 163 (355)
-|+||+||.. ... -+..+-++|+++|++++++|||||+|||.|.... .+...-.-+.+|.+|+ ++++.|
T Consensus 100 avllsLGGAdghIe---L~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk~f~i 176 (332)
T COG3469 100 AVLLSLGGADGHIE---LKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGKNFFI 176 (332)
T ss_pred EEEEEccCccceEE---eccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCCceEE
Confidence 8999999976 222 2233468999999999999999999999996432 1222234555666655 889999
Q ss_pred EEEeccCCcccccCC--ChhhhhccCcEEEEeeccCcCC
Q 041898 164 VMTSHHLPALESVSY--PLDSMQRNLDWIHVLNFDYYLP 200 (355)
Q Consensus 164 s~a~~~~~~~~~~~y--d~~~l~~~vD~v~vm~YD~~~~ 200 (355)
|++...+.-.....| -+.++..+.|||+++-|+..|.
T Consensus 177 tMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 177 TMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred EecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 998654311111123 3688899999999999997764
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.41 E-value=1.4e-11 Score=111.97 Aligned_cols=216 Identities=12% Similarity=0.144 Sum_probs=128.1
Q ss_pred CchhHHHHHHHHHHHhhhhhhccCCCCcEEEEEecCC--C--CCCccccCCCCccEEEEEEEEEeCCCcE--EEeCCC--
Q 041898 1 MAYKIVTLFLLLTLSLPLNLQCTRSPNWIRGGYWHAH--S--ELPIAEIHSALFSHLMCAFAFINSSTYN--IFINST-- 72 (355)
Q Consensus 1 M~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~--~--~~~~~~~~~~~~thvi~~f~~~~~~~~~--~~~~~~-- 72 (355)
|..+..+++ |+.++.+......-....-+++||... + .-...-+....++.++++|+.--+.++. +.+.+.
T Consensus 1 M~L~~~ill-F~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Cs 79 (568)
T KOG4701|consen 1 MRLISSLLL-FVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCS 79 (568)
T ss_pred CcHHHHHHH-HHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccC
Confidence 555554333 333333332233445566789999873 2 1222334556788899998865444333 332221
Q ss_pred --C------hHHHHHHHHHHHhcCCCcEEEEEEcCCc-chhhhhcCcHHHHHHHHHHHHHHH----------cCCCCEEE
Q 041898 73 --S------EQFFVIFTNTVKHRNPSVVTLLSIWGGA-IFSSMINQSSNRKSFIKSSVEMAR----------FNGFHGLD 133 (355)
Q Consensus 73 --~------~~~~~~~~~~lk~~~~~~kvllsiGG~~-~~~~~~~~~~~r~~fi~~i~~~l~----------~~~~DGId 133 (355)
+ -..+..-++..+.+ |+||||++||.. ++ .+.+++.-+.|++.+-+... +.-+||+|
T Consensus 80 d~~~~~l~~CTqi~~di~~CQS~--GiKVlLSLGG~~GnY--s~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfD 155 (568)
T KOG4701|consen 80 DSDTFSLKKCTQIETDIQVCQSN--GIKVLLSLGGYNGNY--SLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFD 155 (568)
T ss_pred ccccccccccchhhhHHHHHHhc--CeEEEEeccCcccce--eeccchhHHHHHHHHHHHhcCCccccCcccchhcccee
Confidence 1 12234444445544 999999999976 33 34567778899999987654 33589999
Q ss_pred EEccCCCCCccHHHHHHHHHHHHc-----cCCcEEEEEeccCCcccccCCChhhh-hccCcEEEEeeccCcCCCCCCCCC
Q 041898 134 LHGVLPDKGTNITKLGTLFDEWRA-----ESQLLLVMTSHHLPALESVSYPLDSM-QRNLDWIHVLNFDYYLPTRDNFTG 207 (355)
Q Consensus 134 iDwE~~~~~~~~~~~~~~l~~lr~-----~~~~~ls~a~~~~~~~~~~~yd~~~l-~~~vD~v~vm~YD~~~~~~~~~~g 207 (355)
+|.|... ...|.+|-++||+ ++.+.|+.+..++... +---+.| .+-.||+.|+.|+.... +...|
T Consensus 156 F~IE~g~----~~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~PD---~~~G~aL~~~~fDf~~IQFYNN~~C--S~SsG 226 (568)
T KOG4701|consen 156 FEIEKGT----NTAYSALAKRLLEIFASDPRRYYLSAAPQCPVPD---HTLGKALSENSFDFLSIQFYNNSTC--SGSSG 226 (568)
T ss_pred eeeecCC----cchHHHHHHHHHHHHccCCceEEeccCCCCCCCc---hhhhhhhhccccceEEEEeecCCCc--ccccC
Confidence 9999532 2456666666655 7889999998775221 1111233 34689999999986432 22223
Q ss_pred CCCCCCCcccccc------cCc---eEEeceeee
Q 041898 208 AHSALYSSSRWFN------TND---TVLGLPYHG 232 (355)
Q Consensus 208 ~~apl~~~~~~~~------~~K---lvlGlp~yG 232 (355)
..-.+++. |++ ++| ++||||--.
T Consensus 227 ~~Q~~fDs--W~~ya~~~a~nKn~~lFLGLPg~~ 258 (568)
T KOG4701|consen 227 SRQSTFDA--WVEYAEDSAYNKNTSLFLGLPGHQ 258 (568)
T ss_pred cccccHHH--HHHHHhhhcccccceEEeeccCCc
Confidence 22222221 654 777 999998543
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.24 E-value=3.4e-06 Score=79.09 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=64.8
Q ss_pred HHHHHHhcCCCcEEEEEEc-CC---c-chhhhhcC-cHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-CCccHHHHHHHH
Q 041898 80 FTNTVKHRNPSVVTLLSIW-GG---A-IFSSMINQ-SSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-KGTNITKLGTLF 152 (355)
Q Consensus 80 ~~~~lk~~~~~~kvllsiG-G~---~-~~~~~~~~-~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-~~~~~~~~~~~l 152 (355)
.++.+|++ ||||+-.|- -| . ....++.+ ++.+.++|+.|+++++.|||||+.||+|... .+++++++..|+
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 45567766 899997773 12 1 67888888 8999999999999999999999999999877 568899999999
Q ss_pred HHHHc
Q 041898 153 DEWRA 157 (355)
Q Consensus 153 ~~lr~ 157 (355)
++|++
T Consensus 129 ~~L~~ 133 (339)
T cd06547 129 RYLKA 133 (339)
T ss_pred HHHHH
Confidence 99999
No 27
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.63 E-value=0.01 Score=55.05 Aligned_cols=148 Identities=10% Similarity=0.108 Sum_probs=93.4
Q ss_pred CCCCccEEEEEEEEEeCCCcEEEeCCC------------ChHHHHHHHHHHHhcCCCcEEEEEEc---------------
Q 041898 46 HSALFSHLMCAFAFINSSTYNIFINST------------SEQFFVIFTNTVKHRNPSVVTLLSIW--------------- 98 (355)
Q Consensus 46 ~~~~~thvi~~f~~~~~~~~~~~~~~~------------~~~~~~~~~~~lk~~~~~~kvllsiG--------------- 98 (355)
+...++-++ +.+..+.|.+..... ....++.+++.+|++ ++-++.=|-
T Consensus 23 ~~t~lNavV---IDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~--gIY~IARIv~FkD~~la~~~pe~a 97 (316)
T PF13200_consen 23 KRTELNAVV---IDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEH--GIYPIARIVVFKDPVLAEAHPEWA 97 (316)
T ss_pred HhcCCceEE---EEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHC--CCEEEEEEEEecChHHhhhChhhE
Confidence 334455555 456666666654322 113467788888887 676663221
Q ss_pred -----C--Cc-chhhhhcCc--HHHHHHHHHHHHHHHcCCCCEEEEEc-cCCCC----------Cc----cHHHHHHHHH
Q 041898 99 -----G--GA-IFSSMINQS--SNRKSFIKSSVEMARFNGFHGLDLHG-VLPDK----------GT----NITKLGTLFD 153 (355)
Q Consensus 99 -----G--~~-~~~~~~~~~--~~r~~fi~~i~~~l~~~~~DGIdiDw-E~~~~----------~~----~~~~~~~~l~ 153 (355)
| |. .-....-|| ..-....-.|.+-+.+.|||.|.||+ .+|.. .. -.+....||+
T Consensus 98 v~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~ 177 (316)
T PF13200_consen 98 VKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLA 177 (316)
T ss_pred EECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHH
Confidence 1 11 001112233 22334555677788888999999998 46751 11 1256788999
Q ss_pred HHHc---cCCcEEEEEeccCCccc----ccCCChhhhhccCcEEEEeeccCc
Q 041898 154 EWRA---ESQLLLVMTSHHLPALE----SVSYPLDSMQRNLDWIHVLNFDYY 198 (355)
Q Consensus 154 ~lr~---~~~~~ls~a~~~~~~~~----~~~yd~~~l~~~vD~v~vm~YD~~ 198 (355)
..|+ ..+..||+.+....... .-+-+++.++++||+|.-|.|-=|
T Consensus 178 ~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 178 YAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH 229 (316)
T ss_pred HHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhhCCEEEecccccc
Confidence 9988 67889999998654332 234589999999999999999755
No 28
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.54 E-value=0.00029 Score=65.65 Aligned_cols=119 Identities=10% Similarity=0.137 Sum_probs=76.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCEEEEE-ccCCC-----------------------CCcc-------HHHHHHHHHHHHc
Q 041898 109 QSSNRKSFIKSSVEMARFNGFHGLDLH-GVLPD-----------------------KGTN-------ITKLGTLFDEWRA 157 (355)
Q Consensus 109 ~~~~r~~fi~~i~~~l~~~~~DGIdiD-wE~~~-----------------------~~~~-------~~~~~~~l~~lr~ 157 (355)
.|+.|+-.++-+.+++++|.+|||.|| +-+|. .+.| +++...|++++++
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 467788888888999999999999999 34432 1244 5677889999987
Q ss_pred -----cCCcEEEEEeccCC-c-ccccCCChhhhh--ccCcEEEEeeccCcCCCCCCCCCCCCCCCCccc-ccc-----cC
Q 041898 158 -----ESQLLLVMTSHHLP-A-LESVSYPLDSMQ--RNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSR-WFN-----TN 222 (355)
Q Consensus 158 -----~~~~~ls~a~~~~~-~-~~~~~yd~~~l~--~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~-~~~-----~~ 222 (355)
++...+++++.+.. . +....-|...-. .++|++..|.|-.. .....+++..... |.+ .-
T Consensus 215 ~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~~~~~~~~~w~~~~~~~~v 288 (311)
T PF02638_consen 215 AIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTAPYEQLAKWWAKQVKPTNV 288 (311)
T ss_pred HHHHhCCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccc------cchhHHHHHHHHHHHHHhhcCCCc
Confidence 78888888765432 1 111112444443 68999999999531 1112223332111 333 34
Q ss_pred ceEEeceeeee
Q 041898 223 DTVLGLPYHGY 233 (355)
Q Consensus 223 KlvlGlp~yG~ 233 (355)
+|.+|+.+|-.
T Consensus 289 ~ly~G~~~y~~ 299 (311)
T PF02638_consen 289 HLYIGLALYKV 299 (311)
T ss_pred eEEEccCcCCC
Confidence 88999988854
No 29
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.53 E-value=0.00024 Score=66.04 Aligned_cols=76 Identities=20% Similarity=0.351 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCcEEEEEE----cCCc-chhhhhc-CcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC-ccHHHHHHHH
Q 041898 80 FTNTVKHRNPSVVTLLSI----WGGA-IFSSMIN-QSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG-TNITKLGTLF 152 (355)
Q Consensus 80 ~~~~lk~~~~~~kvllsi----GG~~-~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~-~~~~~~~~~l 152 (355)
.++.+|++ |+|||-.| ++.. ....++. ++.....+++.++++++.|||||.-|++|.+... .+.+.+..|+
T Consensus 47 widaAHrn--GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~ 124 (311)
T PF03644_consen 47 WIDAAHRN--GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFL 124 (311)
T ss_dssp HHHHHHHT--T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHH
T ss_pred hHHHHHhc--CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHH
Confidence 56677776 89998554 2222 6777888 8888899999999999999999999999987664 6889999999
Q ss_pred HHHHc
Q 041898 153 DEWRA 157 (355)
Q Consensus 153 ~~lr~ 157 (355)
++|++
T Consensus 125 ~~l~~ 129 (311)
T PF03644_consen 125 KYLRK 129 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.22 E-value=0.0027 Score=53.43 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=60.2
Q ss_pred cHHHHHHHHHHHHHHHc-CCCCEEEEEccCCCCCccHHHHHHHHHHHHc--cCCcEEEEEeccCCcccccCCChhhhhcc
Q 041898 110 SSNRKSFIKSSVEMARF-NGFHGLDLHGVLPDKGTNITKLGTLFDEWRA--ESQLLLVMTSHHLPALESVSYPLDSMQRN 186 (355)
Q Consensus 110 ~~~r~~fi~~i~~~l~~-~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~--~~~~~ls~a~~~~~~~~~~~yd~~~l~~~ 186 (355)
++..++..+.+.++-.. +...||.|||..+.+ ....|..|+++||. +.++.|||+.=+. +..... .++.+...
T Consensus 23 ~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t~--~L~~Y~~fL~~LR~~LP~~~~LSIT~L~d-W~~~~~-~L~~L~~~ 98 (181)
T PF11340_consen 23 EQVLARILQLLQRWQAAGNNVAGIQIDFDAATS--RLPAYAQFLQQLRQRLPPDYRLSITALPD-WLSSPD-WLNALPGV 98 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEecCcccc--chHHHHHHHHHHHHhCCCCceEeeEEehh-hhcCch-hhhhHhhc
Confidence 44455555555555533 367999999997654 77899999999999 8899999986542 222211 37889999
Q ss_pred CcEEEEeec
Q 041898 187 LDWIHVLNF 195 (355)
Q Consensus 187 vD~v~vm~Y 195 (355)
||-+.+|+|
T Consensus 99 VDE~VlQ~y 107 (181)
T PF11340_consen 99 VDELVLQVY 107 (181)
T ss_pred CCeeEEEee
Confidence 999999999
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=94.06 E-value=0.56 Score=44.57 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=88.8
Q ss_pred HHHHhcCCCcEEEEEE-cCCc----chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHH
Q 041898 82 NTVKHRNPSVVTLLSI-WGGA----IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 82 ~~lk~~~~~~kvllsi-GG~~----~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr 156 (355)
+.++++ |+||+-.+ ..|. .-..++++++.-+..++.++++.+-.||||=-|+.|...+.....++..|++.|.
T Consensus 118 n~AHrH--GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt 195 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLT 195 (526)
T ss_pred chhhhc--CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHH
Confidence 456666 89998543 3444 6788899999999999999999999999999999997766667788888888887
Q ss_pred c------cCCcEEEEEeccC--CcccccCCChh----hhhccCcEEEEeeccCcCCCCCCCCCCCCCCCCcccccccCce
Q 041898 157 A------ESQLLLVMTSHHL--PALESVSYPLD----SMQRNLDWIHVLNFDYYLPTRDNFTGAHSALYSSSRWFNTNDT 224 (355)
Q Consensus 157 ~------~~~~~ls~a~~~~--~~~~~~~yd~~----~l~~~vD~v~vm~YD~~~~~~~~~~g~~apl~~~~~~~~~~Kl 224 (355)
+ +.++.|--..-.. .-.++. .+. ..-+.+|-+ .|.|. |........|.... .++..+
T Consensus 196 ~~~~~~~p~~~ViWYDSV~~~G~L~WQ~--eLne~N~~Ffd~cdg~-~~NY~----Wke~~l~rsa~~~~----~~r~~v 264 (526)
T KOG2331|consen 196 KVLHSSVPGGLVIWYDSVTDDGQLHWQN--ELNEMNRKFFDACDGI-FMNYN----WKEKHLERSAEQAG----DRRHRV 264 (526)
T ss_pred HHHhhcCCCceEEEEeeeeecCeeehhh--hhhhhcchhhhhccee-eeecc----cccchHHHHHHhhh----hhhhce
Confidence 7 5555554332211 111111 122 223456665 56776 32221111111100 005678
Q ss_pred EEeceeeeee
Q 041898 225 VLGLPYHGYA 234 (355)
Q Consensus 225 vlGlp~yG~~ 234 (355)
.+||-.+||.
T Consensus 265 ~~GiDVf~Rg 274 (526)
T KOG2331|consen 265 FMGIDVFGRG 274 (526)
T ss_pred EEEeEEEecc
Confidence 8888888885
No 32
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=92.57 E-value=0.46 Score=38.31 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHhcCCCcEEE--EEEcCCc----------------------------chhhhhcCcHHHHHHHHHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTL--LSIWGGA----------------------------IFSSMINQSSNRKSFIKSSVEM 123 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvl--lsiGG~~----------------------------~~~~~~~~~~~r~~fi~~i~~~ 123 (355)
.+.+.++++++|++ |++|+ ++++ |. .+...-.|...|+-++..|.++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei 119 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREI 119 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHH
Confidence 45688889888888 77777 4544 32 1333444566788888999999
Q ss_pred HHcCCCCEEEEEc
Q 041898 124 ARFNGFHGLDLHG 136 (355)
Q Consensus 124 l~~~~~DGIdiDw 136 (355)
+++|.+|||=+||
T Consensus 120 ~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 120 LDRYDVDGIFFDI 132 (132)
T ss_pred HHcCCCCEEEecC
Confidence 9999999999986
No 33
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.55 E-value=2.1 Score=39.31 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC------ccHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG------TNITKL 148 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~------~~~~~~ 148 (355)
..+.+.+...++..++..++++|+|.. + +.+++ +++.+.++|+|+|+|++--|... .+.+..
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~--------~---~~~~~-~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~ 150 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS--------K---EDYVE-LARKIERAGAKALELNLSCPNVGGGRQLGQDPEAV 150 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC--------H---HHHHH-HHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHH
Confidence 334433334444335789999999942 2 23333 45566677999999999766432 244556
Q ss_pred HHHHHHHHccCCcEEEEEeccCCcccccCCC-hhhhhc-cCcEEEEee
Q 041898 149 GTLFDEWRAESQLLLVMTSHHLPALESVSYP-LDSMQR-NLDWIHVLN 194 (355)
Q Consensus 149 ~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd-~~~l~~-~vD~v~vm~ 194 (355)
.++++++|+.-++-|++-+.+.....+ ... .+.+.+ -+|++.+..
T Consensus 151 ~eiv~~vr~~~~~pv~vKl~~~~~~~~-~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 151 ANLLKAVKAAVDIPLLVKLSPYFDLED-IVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHccCCCEEEEeCCCCCHHH-HHHHHHHHHHcCCCEEEEEc
Confidence 778888887335667777665322101 111 122222 379998853
No 34
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=91.52 E-value=5.6 Score=37.77 Aligned_cols=141 Identities=14% Similarity=0.116 Sum_probs=75.4
Q ss_pred ccEEEEEEEEEeCCCcE----EEe-CCCChHHHHHHHHHHHhcCCCcEEEEEE---cCCcc------hh-----------
Q 041898 50 FSHLMCAFAFINSSTYN----IFI-NSTSEQFFVIFTNTVKHRNPSVVTLLSI---WGGAI------FS----------- 104 (355)
Q Consensus 50 ~thvi~~f~~~~~~~~~----~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi---GG~~~------~~----------- 104 (355)
.--|+.....+++++.. ... .++..+.++++++.+|+. +.|+++-| |..+. -+
T Consensus 47 ~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p 124 (353)
T cd02930 47 VGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTP 124 (353)
T ss_pred ceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCC
Confidence 33455555556554311 111 122345577788788876 78888877 22210 00
Q ss_pred hhhcC---cHHHHHHHHHHHHHHHcCCCCEEEEEccC---------CC----------CCccHHH-HHHHHHHHHc--cC
Q 041898 105 SMINQ---SSNRKSFIKSSVEMARFNGFHGLDLHGVL---------PD----------KGTNITK-LGTLFDEWRA--ES 159 (355)
Q Consensus 105 ~~~~~---~~~r~~fi~~i~~~l~~~~~DGIdiDwE~---------~~----------~~~~~~~-~~~~l~~lr~--~~ 159 (355)
..++. ..-.+.|++.... +++.|||||+|..-+ |. +.+.+.. ..+.++++|+ ++
T Consensus 125 ~~mt~~eI~~i~~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~ 203 (353)
T cd02930 125 RELSEEEIEQTIEDFARCAAL-AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 01111 1234456655544 445699999998631 21 1122233 3578888888 78
Q ss_pred CcEEEEEeccCCcccccCCCh-------hhhhcc-CcEEEEee
Q 041898 160 QLLLVMTSHHLPALESVSYPL-------DSMQRN-LDWIHVLN 194 (355)
Q Consensus 160 ~~~ls~a~~~~~~~~~~~yd~-------~~l~~~-vD~v~vm~ 194 (355)
++.|.+-+.+.. ....+++. +.|.++ +|+++|..
T Consensus 204 d~~v~iRi~~~D-~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 204 DFIIIYRLSMLD-LVEGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred CceEEEEecccc-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 888888877532 12222332 333333 89999843
No 35
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=1.4 Score=40.08 Aligned_cols=87 Identities=13% Similarity=0.137 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEcc-CCCCC---------------ccHHHHHHHHHHHHccCCcEEEEEeccCCcc----
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGV-LPDKG---------------TNITKLGTLFDEWRAESQLLLVMTSHHLPAL---- 173 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE-~~~~~---------------~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~---- 173 (355)
-+.--+|.+-..+.|||-|.+|+- +|.+. +..+.+..||.--|+.-..-||+.+......
T Consensus 195 WeYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~vpIS~DIYG~nGw~~t~ 274 (400)
T COG1306 195 WEYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELEVPISADIYGQNGWSSTD 274 (400)
T ss_pred hhhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcccceEEEeecccCccCCc
Confidence 344567888889999999999984 66531 1234456666666664456788887753221
Q ss_pred cccCCChhhhhccCcEEEEeeccCcCC
Q 041898 174 ESVSYPLDSMQRNLDWIHVLNFDYYLP 200 (355)
Q Consensus 174 ~~~~yd~~~l~~~vD~v~vm~YD~~~~ 200 (355)
...+-+++.|+.+||.|.-|.|--|-.
T Consensus 275 ~~~GQ~~e~ls~yVDvIsPMfYPSHy~ 301 (400)
T COG1306 275 MALGQFWEALSSYVDVISPMFYPSHYG 301 (400)
T ss_pred chhhhhHHHHHhhhhhccccccccccc
Confidence 222458999999999999999976643
No 36
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=89.09 E-value=8.7 Score=36.34 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=77.7
Q ss_pred ccEEEEEEEEEeCCCc----EEEe-CCCChHHHHHHHHHHHhcCCCcEEEEEEc--CCc-c----------hhhhh----
Q 041898 50 FSHLMCAFAFINSSTY----NIFI-NSTSEQFFVIFTNTVKHRNPSVVTLLSIW--GGA-I----------FSSMI---- 107 (355)
Q Consensus 50 ~thvi~~f~~~~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsiG--G~~-~----------~~~~~---- 107 (355)
.--||.....+++.+. .+.+ .+...+.++++++.+|++ +.|+++-|. |.. . .+.+.
T Consensus 47 ~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~ 124 (343)
T cd04734 47 AGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRH 124 (343)
T ss_pred CCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCC
Confidence 3345656666665431 1112 122345688888888887 678887763 321 1 01100
Q ss_pred ------cC----cHHHHHHHHHHHHHHHcCCCCEEEEEcc--C-------CC----------CCccH-HHHHHHHHHHHc
Q 041898 108 ------NQ----SSNRKSFIKSSVEMARFNGFHGLDLHGV--L-------PD----------KGTNI-TKLGTLFDEWRA 157 (355)
Q Consensus 108 ------~~----~~~r~~fi~~i~~~l~~~~~DGIdiDwE--~-------~~----------~~~~~-~~~~~~l~~lr~ 157 (355)
-+ .+-.+.|++.... +++.|||||+|+.- | |. +.+.+ .-..+.++++|+
T Consensus 125 ~~~~~~mt~~eI~~ii~~f~~AA~r-a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~ 203 (343)
T cd04734 125 RAVPKAMEEEDIEEIIAAFADAARR-CQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRA 203 (343)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHH
Confidence 01 1234556665544 44579999999983 2 21 11222 334578888888
Q ss_pred --cCCcEEEEEeccCCcccccCCC-------hhhhhcc--CcEEEEee
Q 041898 158 --ESQLLLVMTSHHLPALESVSYP-------LDSMQRN--LDWIHVLN 194 (355)
Q Consensus 158 --~~~~~ls~a~~~~~~~~~~~yd-------~~~l~~~--vD~v~vm~ 194 (355)
+.++.+.+-+.+... ...+.+ .+.|.+. +|+++|-.
T Consensus 204 ~vg~~~~v~iRl~~~~~-~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 204 AVGPDFIVGIRISGDED-TEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred HcCCCCeEEEEeehhhc-cCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 778888888876432 222222 2344443 79999844
No 37
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.94 E-value=2.1 Score=39.91 Aligned_cols=81 Identities=12% Similarity=0.090 Sum_probs=45.3
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCEEEEEc----cCCC-----CCccHHHHHHHHHHH----Hc-cCCcEEEEEeccCCccc
Q 041898 109 QSSNRKSFIKSSVEMARFNGFHGLDLHG----VLPD-----KGTNITKLGTLFDEW----RA-ESQLLLVMTSHHLPALE 174 (355)
Q Consensus 109 ~~~~r~~fi~~i~~~l~~~~~DGIdiDw----E~~~-----~~~~~~~~~~~l~~l----r~-~~~~~ls~a~~~~~~~~ 174 (355)
+++.|+-+.+. ++.+.+.||||+.+|. ++.. .+...+..+.|+++| |+ .++++|- +..+....
T Consensus 142 ~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II--~NnG~eil 218 (315)
T TIGR01370 142 DPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVII--PQNGEELL 218 (315)
T ss_pred cHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEE--ecCchhhh
Confidence 45566666665 5666777999999994 2211 123446678888888 54 4444332 22222222
Q ss_pred ccCCChhhhhccCcEEEEee
Q 041898 175 SVSYPLDSMQRNLDWIHVLN 194 (355)
Q Consensus 175 ~~~yd~~~l~~~vD~v~vm~ 194 (355)
. ++-..+...+|.|+.-+
T Consensus 219 ~--~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 219 R--DDHGGLAATVSGWAVEE 236 (315)
T ss_pred h--ccccchhhhceEEEecc
Confidence 1 11123556777777644
No 38
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=87.16 E-value=1.7 Score=43.68 Aligned_cols=80 Identities=11% Similarity=0.210 Sum_probs=48.3
Q ss_pred cCcHHHHHHHHHHHHHHHcCCCCEEEEEcc--------CCCCC--ccHHHHHHHHHHHHc-cCCcEEEEEeccCCccccc
Q 041898 108 NQSSNRKSFIKSSVEMARFNGFHGLDLHGV--------LPDKG--TNITKLGTLFDEWRA-ESQLLLVMTSHHLPALESV 176 (355)
Q Consensus 108 ~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE--------~~~~~--~~~~~~~~~l~~lr~-~~~~~ls~a~~~~~~~~~~ 176 (355)
.|+..|.-++++..+.++..||||+.||=- +.+.. .-...|..||+++++ .+++.|++-.-.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~V~------- 310 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNAVS------- 310 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-GG-------
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeeccC-------
Confidence 366789999999999999999999999932 22222 226789999999999 555555544221
Q ss_pred CCChhhhhc--cCcEEEEee
Q 041898 177 SYPLDSMQR--NLDWIHVLN 194 (355)
Q Consensus 177 ~yd~~~l~~--~vD~v~vm~ 194 (355)
++....+++ .+||+-.--
T Consensus 311 ~~g~~~~a~~~~~d~lY~Ev 330 (559)
T PF13199_consen 311 GYGIEQIAKTSKVDFLYNEV 330 (559)
T ss_dssp GTTHHHHTT-S--SSEEEE-
T ss_pred ccchhhhhcccccceeeeec
Confidence 233344433 566665543
No 39
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=86.53 E-value=8.5 Score=36.54 Aligned_cols=123 Identities=18% Similarity=0.310 Sum_probs=70.3
Q ss_pred CCChHHHHHHHHHHHhcCCCcEEEEEE--cCC-c--ch---------hh------------hhcC---cHHHHHHHHHHH
Q 041898 71 STSEQFFVIFTNTVKHRNPSVVTLLSI--WGG-A--IF---------SS------------MINQ---SSNRKSFIKSSV 121 (355)
Q Consensus 71 ~~~~~~~~~~~~~lk~~~~~~kvllsi--GG~-~--~~---------~~------------~~~~---~~~r~~fi~~i~ 121 (355)
++....++++++.+|++ +.|+++-| +|. . .. +. .++. ..-.+.|+++..
T Consensus 74 d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~ 151 (353)
T cd04735 74 DSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATR 151 (353)
T ss_pred hhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 33457788898888887 68888776 221 1 00 00 0100 122445666554
Q ss_pred HHHHcCCCCEEEEEccC---------CC----------CCccHHHH-HHHHHHHHc--c----CCcEEEEEeccCCcccc
Q 041898 122 EMARFNGFHGLDLHGVL---------PD----------KGTNITKL-GTLFDEWRA--E----SQLLLVMTSHHLPALES 175 (355)
Q Consensus 122 ~~l~~~~~DGIdiDwE~---------~~----------~~~~~~~~-~~~l~~lr~--~----~~~~ls~a~~~~~~~~~ 175 (355)
. +++.|||||+|+.-+ |. +.+.+..| .+.++++|+ + .++.|.+.+.+... ..
T Consensus 152 ~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~-~~ 229 (353)
T cd04735 152 R-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEP-EE 229 (353)
T ss_pred H-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccc-cC
Confidence 4 455799999998632 21 11233333 467788887 5 78889998876422 12
Q ss_pred cCCC-------hhhhhcc-CcEEEEeeccC
Q 041898 176 VSYP-------LDSMQRN-LDWIHVLNFDY 197 (355)
Q Consensus 176 ~~yd-------~~~l~~~-vD~v~vm~YD~ 197 (355)
.+.+ .+.|.+. +|+|+|-...+
T Consensus 230 ~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 230 PGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 2222 2333332 89999976543
No 40
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.18 E-value=1.9 Score=41.56 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCCEEEEEcc--CCCC-------------------Ccc--------HHHHHHHHHHHHc---
Q 041898 110 SSNRKSFIKSSVEMARFNGFHGLDLHGV--LPDK-------------------GTN--------ITKLGTLFDEWRA--- 157 (355)
Q Consensus 110 ~~~r~~fi~~i~~~l~~~~~DGIdiDwE--~~~~-------------------~~~--------~~~~~~~l~~lr~--- 157 (355)
++.|+-..+-+++.+++|..|||.||-- +|.. +.+ +++..+|++++..
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455555667788999999999999932 2211 111 2455677777766
Q ss_pred --cCCcEEEEEe-cc-CCcccccCC---Chhhh--hccCcEEEEeeccC
Q 041898 158 --ESQLLLVMTS-HH-LPALESVSY---PLDSM--QRNLDWIHVLNFDY 197 (355)
Q Consensus 158 --~~~~~ls~a~-~~-~~~~~~~~y---d~~~l--~~~vD~v~vm~YD~ 197 (355)
+++..++++. ++ ........+ |...- ..++|++..|.|--
T Consensus 261 avKp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 261 AVKPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred hhCCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhcc
Confidence 8888999987 41 221111111 22222 46899999999943
No 41
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.35 E-value=8.1 Score=36.08 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=74.8
Q ss_pred ccEEEEEEEEEeCCCcE----EE-eCCCChHHHHHHHHHHHhcCCCcEEEEEE--cCCc---ch--------hh------
Q 041898 50 FSHLMCAFAFINSSTYN----IF-INSTSEQFFVIFTNTVKHRNPSVVTLLSI--WGGA---IF--------SS------ 105 (355)
Q Consensus 50 ~thvi~~f~~~~~~~~~----~~-~~~~~~~~~~~~~~~lk~~~~~~kvllsi--GG~~---~~--------~~------ 105 (355)
.--|+.....+++.+.. .. ..++....++++++.+|++ +.|+++-| +|.. .+ +.
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~ 124 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGG 124 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCC
Confidence 44556665666665421 11 1222346678888888877 66766555 2321 00 00
Q ss_pred ----hhcCcHH----HHHHHHHHHHHHHcCCCCEEEEEccC---------CC----------CCccHHH-HHHHHHHHHc
Q 041898 106 ----MINQSSN----RKSFIKSSVEMARFNGFHGLDLHGVL---------PD----------KGTNITK-LGTLFDEWRA 157 (355)
Q Consensus 106 ----~~~~~~~----r~~fi~~i~~~l~~~~~DGIdiDwE~---------~~----------~~~~~~~-~~~~l~~lr~ 157 (355)
-.-+.+. .+.|++..... ++.|||||+|+--. |. +.+.+.. ..+.++++|+
T Consensus 125 ~~~~~~mt~~ei~~~i~~~~~aA~~a-~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~ 203 (327)
T cd02803 125 GEPPREMTKEEIEQIIEDFAAAARRA-KEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVRE 203 (327)
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHH
Confidence 0011122 33444444333 45799999999642 11 1112222 3467777887
Q ss_pred --cCCcEEEEEeccCCcccccCCC-------hhhhhcc-CcEEEEeecc
Q 041898 158 --ESQLLLVMTSHHLPALESVSYP-------LDSMQRN-LDWIHVLNFD 196 (355)
Q Consensus 158 --~~~~~ls~a~~~~~~~~~~~yd-------~~~l~~~-vD~v~vm~YD 196 (355)
++++.|.+.+.+.... ..+++ .+.+.+. +|+|++-.-.
T Consensus 204 ~~g~d~~i~vris~~~~~-~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 204 AVGPDFPVGVRLSADDFV-PGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HcCCCceEEEEechhccC-CCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 6788899888764221 11222 2334333 8999986644
No 42
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=81.83 E-value=9.7 Score=35.86 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=76.8
Q ss_pred CccEEEEEEEEEeCCCcE----EEe-CCCChHHHHHHHHHHHhcCCCcEEEEEE--cCC-c--ch---------------
Q 041898 49 LFSHLMCAFAFINSSTYN----IFI-NSTSEQFFVIFTNTVKHRNPSVVTLLSI--WGG-A--IF--------------- 103 (355)
Q Consensus 49 ~~thvi~~f~~~~~~~~~----~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi--GG~-~--~~--------------- 103 (355)
.+--|+.....+++.+.. +.+ .++.-..++++++.+|++ +.|+++-| +|. . ..
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~ 123 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGG 123 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEccCCCcCCCCCCCccccccccccccCC
Confidence 455566666666665321 112 222346678888888877 67888776 221 1 10
Q ss_pred ------hh-----------hhcC---cHHHHHHHHHHHHHHHcCCCCEEEEEccC---------CC----------CCcc
Q 041898 104 ------SS-----------MINQ---SSNRKSFIKSSVEMARFNGFHGLDLHGVL---------PD----------KGTN 144 (355)
Q Consensus 104 ------~~-----------~~~~---~~~r~~fi~~i~~~l~~~~~DGIdiDwE~---------~~----------~~~~ 144 (355)
+. .++. ..-.+.|++.+... ++.|||||+|+.-. |. +-+.
T Consensus 124 ~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a-~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~n 202 (336)
T cd02932 124 WQVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRA-VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLEN 202 (336)
T ss_pred CceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHH
Confidence 00 0100 12344566655544 44699999999632 21 1122
Q ss_pred HHHH-HHHHHHHHc--cCCcEEEEEeccCCcccccCCCh-------hhhhc-cCcEEEEee
Q 041898 145 ITKL-GTLFDEWRA--ESQLLLVMTSHHLPALESVSYPL-------DSMQR-NLDWIHVLN 194 (355)
Q Consensus 145 ~~~~-~~~l~~lr~--~~~~~ls~a~~~~~~~~~~~yd~-------~~l~~-~vD~v~vm~ 194 (355)
+..| .+.++++|+ ++++.|.+.+.+... ...+++. +.|.+ -+|+|.+..
T Consensus 203 r~rf~~eiv~aIR~~vG~d~~v~vri~~~~~-~~~g~~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 203 RMRFLLEVVDAVRAVWPEDKPLFVRISATDW-VEGGWDLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEEccccc-CCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 3333 577888887 778899998875321 1223332 23333 278888754
No 43
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=81.68 E-value=8.8 Score=36.75 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCc------------------chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEcc
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGA------------------IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGV 137 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~------------------~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE 137 (355)
.-..+++.+|+++|++.+. .+||.. .|..++..--.-.+..+.+++.+++..-|-+-+ ..
T Consensus 13 ~ga~Li~~Lk~~~p~~~~~-GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl-ID 90 (373)
T PF02684_consen 13 HGARLIRALKARDPDIEFY-GVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVIL-ID 90 (373)
T ss_pred HHHHHHHHHHhhCCCcEEE-EEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-eC
Confidence 3456788999999988765 777742 455555544455567788999999999997643 22
Q ss_pred CCCCCccHHHH-HHHHHHHHc-cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEee
Q 041898 138 LPDKGTNITKL-GTLFDEWRA-ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194 (355)
Q Consensus 138 ~~~~~~~~~~~-~~~l~~lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~ 194 (355)
+| .| ..+.+.+|+ +....+---++|.-|.|. ..-.+.+.+++|.+.+..
T Consensus 91 ~p-------gFNlrlak~lk~~~~~~~viyYI~PqvWAWr-~~R~~~i~~~~D~ll~if 141 (373)
T PF02684_consen 91 YP-------GFNLRLAKKLKKRGIPIKVIYYISPQVWAWR-PGRAKKIKKYVDHLLVIF 141 (373)
T ss_pred CC-------CccHHHHHHHHHhCCCceEEEEECCceeeeC-ccHHHHHHHHHhheeECC
Confidence 22 23 467788887 444334444556677776 446899999999986643
No 44
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=81.46 E-value=14 Score=37.98 Aligned_cols=61 Identities=8% Similarity=0.184 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE-----cCC-c-chh------------------------h-hhcCcHHHHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSI-----WGG-A-IFS------------------------S-MINQSSNRKSFIKSSVE 122 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsi-----GG~-~-~~~------------------------~-~~~~~~~r~~fi~~i~~ 122 (355)
..++.+++++|++ |++|++=+ ++. . .|. . -..++.-|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5689999989887 89999765 110 0 110 0 11256778889999999
Q ss_pred HHHcCCCCEEEEEcc
Q 041898 123 MARFNGFHGLDLHGV 137 (355)
Q Consensus 123 ~l~~~~~DGIdiDwE 137 (355)
|++++++||+-||.-
T Consensus 307 W~~e~~iDGfR~D~~ 321 (605)
T TIGR02104 307 WVKEYNIDGFRFDLM 321 (605)
T ss_pred HHHHcCCCEEEEech
Confidence 999999999999965
No 45
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=81.38 E-value=14 Score=32.48 Aligned_cols=99 Identities=9% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHHH
Q 041898 84 VKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTLF 152 (355)
Q Consensus 84 lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~l 152 (355)
......+..++++|+|.. + +.|++.. +.+++.|||||+|+.-.|.. ..+.....+++
T Consensus 48 ~~~~~~~~p~~~qi~g~~--------~---~~~~~aa-~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii 115 (231)
T cd02801 48 LTRNPEERPLIVQLGGSD--------P---ETLAEAA-KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIV 115 (231)
T ss_pred hccCccCCCEEEEEcCCC--------H---HHHHHHH-HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHH
Confidence 344556789999999842 2 3444433 44456799999999765431 12444566888
Q ss_pred HHHHccCCcEEEEEeccCCccc-ccCCChhhhhc-cCcEEEEee
Q 041898 153 DEWRAESQLLLVMTSHHLPALE-SVSYPLDSMQR-NLDWIHVLN 194 (355)
Q Consensus 153 ~~lr~~~~~~ls~a~~~~~~~~-~~~yd~~~l~~-~vD~v~vm~ 194 (355)
+++++.-+..+++.+..+.... ....-.+.+.+ -+|++++..
T Consensus 116 ~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 116 RAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred HHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECC
Confidence 8888722245555554322111 10011223332 378988844
No 46
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.29 E-value=12 Score=39.08 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCC------------c----------------chhh---hhcCcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGG------------A----------------IFSS---MINQSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~------------~----------------~~~~---~~~~~~~r~~fi~~i~ 121 (355)
....++.+++.+|++ +++|++-+=-. . .|.. -..+++-|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 467799999999888 89999775110 0 0111 1235677889999999
Q ss_pred HHHHcCCCCEEEEE
Q 041898 122 EMARFNGFHGLDLH 135 (355)
Q Consensus 122 ~~l~~~~~DGIdiD 135 (355)
-+++++++||+-+|
T Consensus 395 ~Wl~eyhIDG~R~D 408 (730)
T PRK12568 395 EWIEHYHLDGLRVD 408 (730)
T ss_pred HHHHHhCceEEEEc
Confidence 99999999999999
No 47
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=80.77 E-value=10 Score=35.37 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=56.7
Q ss_pred CcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHHHHHHHc-
Q 041898 90 SVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTLFDEWRA- 157 (355)
Q Consensus 90 ~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~l~~lr~- 157 (355)
+..+.+.|.|. ++ +.|++.+.. +.+.|+|||||+.--|.. ..+.+...++++++++
T Consensus 62 e~p~~vQl~g~--------~p---~~~~~aA~~-~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~ 129 (312)
T PRK10550 62 GTLVRIQLLGQ--------YP---QWLAENAAR-AVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA 129 (312)
T ss_pred CCcEEEEeccC--------CH---HHHHHHHHH-HHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh
Confidence 46788999884 33 445554443 455799999999887641 1445566788888887
Q ss_pred -cCCcEEEEEeccCCcccccCCChhhh-hc-cCcEEEEe
Q 041898 158 -ESQLLLVMTSHHLPALESVSYPLDSM-QR-NLDWIHVL 193 (355)
Q Consensus 158 -~~~~~ls~a~~~~~~~~~~~yd~~~l-~~-~vD~v~vm 193 (355)
+.++-||+-+..+........++..+ .+ -+|.+.|.
T Consensus 130 ~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 130 VPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred cCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 44678888876542211111122222 22 37888874
No 48
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.43 E-value=8.5 Score=36.29 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE--cCCc---chh--hh--------------------hcC---cHHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSI--WGGA---IFS--SM--------------------INQ---SSNRKSFIKSSVE 122 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi--GG~~---~~~--~~--------------------~~~---~~~r~~fi~~i~~ 122 (355)
..+.++++++.+|++ +.|+++-| +|.. .+. .+ ++. ..-.+.|++...
T Consensus 80 ~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~- 156 (338)
T cd04733 80 DLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAAR- 156 (338)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHH-
Confidence 456678888888887 77888765 3321 010 00 000 012345665544
Q ss_pred HHHcCCCCEEEEEccC---------CCC----------CccHHHH-HHHHHHHHc--cCCcEEEEEeccCCcccccCCC-
Q 041898 123 MARFNGFHGLDLHGVL---------PDK----------GTNITKL-GTLFDEWRA--ESQLLLVMTSHHLPALESVSYP- 179 (355)
Q Consensus 123 ~l~~~~~DGIdiDwE~---------~~~----------~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~~~~~~~~~yd- 179 (355)
.+++.|||||+|+--+ |.. -+++..| .+.|+++|+ ++++.|.+.+.+. .....+++
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~-~~~~~g~~~ 235 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA-DFQRGGFTE 235 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH-HcCCCCCCH
Confidence 4667899999998653 321 1233333 467888887 7788999988742 11122333
Q ss_pred ------hhhhhcc-CcEEEEee
Q 041898 180 ------LDSMQRN-LDWIHVLN 194 (355)
Q Consensus 180 ------~~~l~~~-vD~v~vm~ 194 (355)
.+.|.+. +|+|.|..
T Consensus 236 eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHHHHHHHHHHcCCCEEEecC
Confidence 2334443 79998865
No 49
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=80.26 E-value=14 Score=39.63 Aligned_cols=78 Identities=10% Similarity=0.106 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE-------cCCc---chhh------------------------hhcCcHHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSI-------WGGA---IFSS------------------------MINQSSNRKSFIKSS 120 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsi-------GG~~---~~~~------------------------~~~~~~~r~~fi~~i 120 (355)
..++++++.+|++ |++|++=+ +|.. .+.. ...++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3578889889887 89999765 2211 0000 112466688899999
Q ss_pred HHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc
Q 041898 121 VEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA 157 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~ 157 (355)
.-|+++|++||+-||.-.- -+...+..+.+++++
T Consensus 482 ~~W~~ey~VDGFRfDlm~~---~~~~f~~~~~~~l~~ 515 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGH---HPKAQMLAAREAIKA 515 (898)
T ss_pred HHHHHHcCCCEEEEechhh---CCHHHHHHHHHHHHH
Confidence 9999999999999997643 234455566666666
No 50
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=78.63 E-value=7 Score=37.58 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEE--c-CCc---ch---------hhhh-----------cCc----HHHHHHHHHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSI--W-GGA---IF---------SSMI-----------NQS----SNRKSFIKSSVEM 123 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsi--G-G~~---~~---------~~~~-----------~~~----~~r~~fi~~i~~~ 123 (355)
.+.++++++.+|++ +.|+++-| + |.. .. +.+. -+. .-.+.|++... .
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~-r 158 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESAV-I 158 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHHH-H
Confidence 35688888888877 78999888 2 422 10 0000 011 22445555443 4
Q ss_pred HHcCCCCEEEEEcc---CC--------C---------CCccHHHH-HHHHHHHHc--cCCcEEEEEecc
Q 041898 124 ARFNGFHGLDLHGV---LP--------D---------KGTNITKL-GTLFDEWRA--ESQLLLVMTSHH 169 (355)
Q Consensus 124 l~~~~~DGIdiDwE---~~--------~---------~~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~ 169 (355)
+++.|||||+|..- |. . +.+++..| .+.++++|+ ++++.|++-+.+
T Consensus 159 a~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 159 AKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 44579999999973 22 0 11233333 477888888 778888888764
No 51
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=78.49 E-value=1.4 Score=33.28 Aligned_cols=13 Identities=46% Similarity=0.368 Sum_probs=8.6
Q ss_pred CchhHHHHHHHHH
Q 041898 1 MAYKIVTLFLLLT 13 (355)
Q Consensus 1 M~~~~~~~~l~~~ 13 (355)
|++|+++++.+++
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 8989866554443
No 52
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.08 E-value=34 Score=32.95 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcC-CcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC----------c
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWG-GAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG----------T 143 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG-~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~----------~ 143 (355)
+.+.+.+..+|++.|++.++.||.| .+ .+.+.+ +++.+++.|.|+|+|++-.|..+ .
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s-----------~~~~~~-~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq 165 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN-----------KDAWEE-IIERVEETGVDALEINFSCPHGMPERKMGAAVGQ 165 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC-----------HHHHHH-HHHHHHhcCCCEEEEECCCCCCCCcCccchhhcc
Confidence 3343334567777788999999954 32 122222 33455678999999999876542 3
Q ss_pred cHHHHHHHHHHHHccCCcEEEEEecc
Q 041898 144 NITKLGTLFDEWRAESQLLLVMTSHH 169 (355)
Q Consensus 144 ~~~~~~~~l~~lr~~~~~~ls~a~~~ 169 (355)
+.+....+++.+++....-+.+-+++
T Consensus 166 ~~e~~~~i~~~Vk~~~~iPv~vKLsP 191 (385)
T PLN02495 166 DCDLLEEVCGWINAKATVPVWAKMTP 191 (385)
T ss_pred CHHHHHHHHHHHHHhhcCceEEEeCC
Confidence 44455566677776223445555554
No 53
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=77.88 E-value=30 Score=31.88 Aligned_cols=68 Identities=7% Similarity=0.099 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC-CCEEEEEccCCCCC-------ccHHHHHHHHHHHHccCCc
Q 041898 90 SVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG-FHGLDLHGVLPDKG-------TNITKLGTLFDEWRAESQL 161 (355)
Q Consensus 90 ~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGIdiDwE~~~~~-------~~~~~~~~~l~~lr~~~~~ 161 (355)
+..+++||+|.+ .+.|++ +++.++++| +|||+|+.--|... .+.+...++++++|+.-++
T Consensus 91 ~~p~i~si~g~~-----------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~ 158 (301)
T PRK07259 91 DTPIIANVAGST-----------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKV 158 (301)
T ss_pred CCcEEEEeccCC-----------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCC
Confidence 678999999841 355654 444567888 99999988544321 2345567788888873356
Q ss_pred EEEEEecc
Q 041898 162 LLVMTSHH 169 (355)
Q Consensus 162 ~ls~a~~~ 169 (355)
-|++-+.+
T Consensus 159 pv~vKl~~ 166 (301)
T PRK07259 159 PVIVKLTP 166 (301)
T ss_pred CEEEEcCC
Confidence 67777664
No 54
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=77.58 E-value=36 Score=33.13 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=51.0
Q ss_pred HHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC----------ccHHHHHHH
Q 041898 82 NTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG----------TNITKLGTL 151 (355)
Q Consensus 82 ~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~----------~~~~~~~~~ 151 (355)
+.+++..++..+++||.|.. ++ +.++ ..++.+++.++|+|+|+.-.|... .+.+.+.++
T Consensus 91 ~~~~~~~~~~p~i~si~g~~-------~~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVEC-------NE---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMY 159 (420)
T ss_pred HHHHhhCCCceEEEEeccCC-------CH---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHH
Confidence 34555545677899998831 11 3333 345555777899999999887521 466778889
Q ss_pred HHHHHccCCcEEEEEecc
Q 041898 152 FDEWRAESQLLLVMTSHH 169 (355)
Q Consensus 152 l~~lr~~~~~~ls~a~~~ 169 (355)
++++++..+.-|++-+++
T Consensus 160 ~~~v~~~~~~Pv~vKl~p 177 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLTP 177 (420)
T ss_pred HHHHHhccCCcEEEEcCC
Confidence 999988334556666664
No 55
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.43 E-value=12 Score=35.67 Aligned_cols=94 Identities=14% Similarity=0.159 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE---cCCc--ch-----------h----------hhhcC---cHHHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSI---WGGA--IF-----------S----------SMINQ---SSNRKSFIKSSVEM 123 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi---GG~~--~~-----------~----------~~~~~---~~~r~~fi~~i~~~ 123 (355)
..+.++++++.+|++ +.|+++-| |... .. + ..++. ..-.+.|++.. +.
T Consensus 76 ~i~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~ 152 (361)
T cd04747 76 ALAGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-AD 152 (361)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HH
Confidence 346677888788887 78888777 2221 00 0 00110 11233555544 34
Q ss_pred HHcCCCCEEEEEccC---------CCC----------CccHHHH-HHHHHHHHc--cCCcEEEEEecc
Q 041898 124 ARFNGFHGLDLHGVL---------PDK----------GTNITKL-GTLFDEWRA--ESQLLLVMTSHH 169 (355)
Q Consensus 124 l~~~~~DGIdiDwE~---------~~~----------~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~ 169 (355)
+++.|||||+|+--+ |.. -+.+..| .+.++++|+ ++++.|.+-+.+
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~ 220 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ 220 (361)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc
Confidence 455699999999655 321 1223333 467777887 788899998875
No 56
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=77.28 E-value=29 Score=32.78 Aligned_cols=120 Identities=9% Similarity=0.099 Sum_probs=69.6
Q ss_pred CccEEEEEEEEEeCCCc----EEEe-CCCChHHHHHHHHHHHhcCCCcEEEEEEc--CCc------chhh--------hh
Q 041898 49 LFSHLMCAFAFINSSTY----NIFI-NSTSEQFFVIFTNTVKHRNPSVVTLLSIW--GGA------IFSS--------MI 107 (355)
Q Consensus 49 ~~thvi~~f~~~~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsiG--G~~------~~~~--------~~ 107 (355)
.+--||.....+++.+. .+.+ .++.-..++++++.+|++ +.|+++-|. |.. .... +-
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~ 126 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALP 126 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSS
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--CccceeeccccccccCcccCCCCccCcccccccC
Confidence 45567777777777642 1222 122346678888888887 789997773 311 1100 00
Q ss_pred c------------Cc----HHHHHHHHHHHHHHHcCCCCEEEEEccCC---------C----------CCccHHHH-HHH
Q 041898 108 N------------QS----SNRKSFIKSSVEMARFNGFHGLDLHGVLP---------D----------KGTNITKL-GTL 151 (355)
Q Consensus 108 ~------------~~----~~r~~fi~~i~~~l~~~~~DGIdiDwE~~---------~----------~~~~~~~~-~~~ 151 (355)
. +. .-.+.|++...... +-|||||+|+--+- . +.+++..| ...
T Consensus 127 ~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~-~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Ei 205 (341)
T PF00724_consen 127 SPIKFMGYPPREMTEEEIEEIIEDFAQAARRAK-EAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEI 205 (341)
T ss_dssp TTTTETSCEEEE--HHHHHHHHHHHHHHHHHHH-HTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHH
T ss_pred cccccCCCCCeeCCHHHHHHHHHHHHHHHHHHH-HhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHH
Confidence 0 11 12334555544444 47999999996531 1 11334444 467
Q ss_pred HHHHHc--cCCcEEEEEeccCC
Q 041898 152 FDEWRA--ESQLLLVMTSHHLP 171 (355)
Q Consensus 152 l~~lr~--~~~~~ls~a~~~~~ 171 (355)
++++|+ ++++.|.+.+.+..
T Consensus 206 i~aIr~~vg~d~~v~~Rls~~~ 227 (341)
T PF00724_consen 206 IEAIREAVGPDFPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHTGGGEEEEEEETTC
T ss_pred HHHHHHHhcCCceEEEEEeeec
Confidence 788888 88999999998754
No 57
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=76.00 E-value=31 Score=32.16 Aligned_cols=98 Identities=5% Similarity=0.008 Sum_probs=54.6
Q ss_pred HhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHHHH
Q 041898 85 KHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTLFD 153 (355)
Q Consensus 85 k~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~l~ 153 (355)
+....+..+++.|+|. ++ +.|++ .++.+++.|+|||||+.--|.. ..+.....+.++
T Consensus 57 ~~~~~~~p~i~ql~g~--------~~---~~~~~-aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~ 124 (319)
T TIGR00737 57 DIAEDETPISVQLFGS--------DP---DTMAE-AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVK 124 (319)
T ss_pred hcCCccceEEEEEeCC--------CH---HHHHH-HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHH
Confidence 3344467788999994 22 34444 3345577899999999876531 123344567777
Q ss_pred HHHccCCcEEEEEeccCCcccc-cCCCh-hhhhc-cCcEEEEee
Q 041898 154 EWRAESQLLLVMTSHHLPALES-VSYPL-DSMQR-NLDWIHVLN 194 (355)
Q Consensus 154 ~lr~~~~~~ls~a~~~~~~~~~-~~yd~-~~l~~-~vD~v~vm~ 194 (355)
++|+.-++.+++-+..+..... ...++ ..+.+ -+|.+.+..
T Consensus 125 ~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~ 168 (319)
T TIGR00737 125 AVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHG 168 (319)
T ss_pred HHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEc
Confidence 8877334556666543211100 00112 23333 279998843
No 58
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=75.88 E-value=48 Score=30.62 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=51.2
Q ss_pred HHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC----------CccHHHHHH
Q 041898 81 TNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK----------GTNITKLGT 150 (355)
Q Consensus 81 ~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~----------~~~~~~~~~ 150 (355)
+..+++..++..+++++.|. .+ .+.+++ +++.+++.++|+|+|++-.|.. ..+.+.+.+
T Consensus 90 ~~~~~~~~~~~p~i~si~G~-------~~---~~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~ 158 (299)
T cd02940 90 IRELKKDFPDKILIASIMCE-------YN---KEDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEE 158 (299)
T ss_pred HHHHHhhCCCCeEEEEecCC-------CC---HHHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHH
Confidence 34555554567889999773 01 244444 4445566789999999987753 145677888
Q ss_pred HHHHHHccCCcEEEEEecc
Q 041898 151 LFDEWRAESQLLLVMTSHH 169 (355)
Q Consensus 151 ~l~~lr~~~~~~ls~a~~~ 169 (355)
+++.+++..+.-+++-+++
T Consensus 159 iv~~v~~~~~~Pv~vKl~~ 177 (299)
T cd02940 159 ICRWVREAVKIPVIAKLTP 177 (299)
T ss_pred HHHHHHHhcCCCeEEECCC
Confidence 8999987334556666664
No 59
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=75.58 E-value=44 Score=30.67 Aligned_cols=69 Identities=13% Similarity=0.194 Sum_probs=46.4
Q ss_pred CCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC-------ccHHHHHHHHHHHHccCCc
Q 041898 89 PSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG-------TNITKLGTLFDEWRAESQL 161 (355)
Q Consensus 89 ~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~-------~~~~~~~~~l~~lr~~~~~ 161 (355)
.+.+++++|+|. ..+.|++ +++.+++.|+|+|+|++-.|... .+.....++++++|+.-++
T Consensus 88 ~~~p~ivsi~g~-----------~~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 88 FGTPVIASIAGS-----------TVEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred CCCcEEEEEecC-----------CHHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 468899999984 1345554 44456777999999998766431 2344556788888873356
Q ss_pred EEEEEecc
Q 041898 162 LLVMTSHH 169 (355)
Q Consensus 162 ~ls~a~~~ 169 (355)
-|++-+.+
T Consensus 156 Pv~vKl~~ 163 (296)
T cd04740 156 PVIVKLTP 163 (296)
T ss_pred CEEEEeCC
Confidence 66666654
No 60
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=75.20 E-value=22 Score=38.99 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcC-----Ccchh-----------------------h-hhcCcHHHHHHHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWG-----GAIFS-----------------------S-MINQSSNRKSFIKSSVEMAR 125 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG-----~~~~~-----------------------~-~~~~~~~r~~fi~~i~~~l~ 125 (355)
..++++++.+|++ |++|++=+== ...|. . -..++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5688999999887 8999976511 00000 0 11245678889999999999
Q ss_pred cCCCCEEEEEccCCCCCccHHHHHHHHHHHHc
Q 041898 126 FNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA 157 (355)
Q Consensus 126 ~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~ 157 (355)
+|++||.-||.-. .-+...+..+.+++++
T Consensus 633 ey~VDGFRfDl~g---~~d~~~~~~~~~~l~~ 661 (1111)
T TIGR02102 633 EFKVDGFRFDMMG---DHDAASIEIAYKEAKA 661 (1111)
T ss_pred hcCCcEEEEeccc---cCCHHHHHHHHHHHHH
Confidence 9999999999652 2344556667777776
No 61
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=74.80 E-value=37 Score=30.49 Aligned_cols=89 Identities=9% Similarity=0.175 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC-CCEEEEEccCCCCCccHHHHHHHHHH
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG-FHGLDLHGVLPDKGTNITKLGTLFDE 154 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGIdiDwE~~~~~~~~~~~~~~l~~ 154 (355)
.+....+.+|+..|++|+++. +.+ . .....+++++.+-+.++.+... +|||-|-+-......+...+.++|++
T Consensus 104 ~i~~af~~ar~~~P~a~l~~N--dy~---~-~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~ 177 (254)
T smart00633 104 YIEKAFRYAREADPDAKLFYN--DYN---T-EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDR 177 (254)
T ss_pred HHHHHHHHHHHhCCCCEEEEe--ccC---C-cCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHH
Confidence 344444588999999999985 221 1 1112455555555554444433 79998865422121235668888888
Q ss_pred HHc-cCCcEEE-EEeccC
Q 041898 155 WRA-ESQLLLV-MTSHHL 170 (355)
Q Consensus 155 lr~-~~~~~ls-~a~~~~ 170 (355)
+.+ +....|| +.++..
T Consensus 178 ~~~~g~pi~iTE~dv~~~ 195 (254)
T smart00633 178 FASLGLEIQITELDISGY 195 (254)
T ss_pred HHHcCCceEEEEeecCCC
Confidence 887 6667766 666643
No 62
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=73.75 E-value=47 Score=30.61 Aligned_cols=85 Identities=8% Similarity=0.116 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHhc--CCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcC--CCCEEEEEccCCCC------Cc
Q 041898 74 EQFFVIFTNTVKHR--NPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFN--GFHGLDLHGVLPDK------GT 143 (355)
Q Consensus 74 ~~~~~~~~~~lk~~--~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~--~~DGIdiDwE~~~~------~~ 143 (355)
.+.+.+.++.+++. .++..+++||+|. .+.+++.+.++.+.. +.|+|+|+.--|.. ..
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~------------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~ 140 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGS------------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAY 140 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCC------------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccC
Confidence 33343333344433 2467899999882 244554444444333 69999999987752 23
Q ss_pred cHHHHHHHHHHHHccCCcEEEEEeccC
Q 041898 144 NITKLGTLFDEWRAESQLLLVMTSHHL 170 (355)
Q Consensus 144 ~~~~~~~~l~~lr~~~~~~ls~a~~~~ 170 (355)
+.+.+.++++++++..+.-+++-+++.
T Consensus 141 ~~~~~~~i~~~v~~~~~iPv~vKl~p~ 167 (294)
T cd04741 141 DFDATLEYLTAVKAAYSIPVGVKTPPY 167 (294)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 567788899999883345577777654
No 63
>PLN02960 alpha-amylase
Probab=73.71 E-value=27 Score=37.13 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEc--------CCc---------------------chhh---hhcCcHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIW--------GGA---------------------IFSS---MINQSSNRKSFIKSS 120 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG--------G~~---------------------~~~~---~~~~~~~r~~fi~~i 120 (355)
+...++.+++.+|++ +++|++-+= ++. .|.. -..++.-|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 456789999989887 899998761 100 0111 124577888899999
Q ss_pred HHHHHcCCCCEEEEE
Q 041898 121 VEMARFNGFHGLDLH 135 (355)
Q Consensus 121 ~~~l~~~~~DGIdiD 135 (355)
.-|+++|++||+-+|
T Consensus 542 ~yWl~EyhIDGfR~D 556 (897)
T PLN02960 542 NWWVTEYRVDGFQFH 556 (897)
T ss_pred HHHHHHHCCCceeec
Confidence 999999999999998
No 64
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=72.79 E-value=5.6 Score=28.92 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=28.4
Q ss_pred hhhhhcC-cHHHHHHHHHHHHHHHcCCCCEEEEEcc
Q 041898 103 FSSMINQ-SSNRKSFIKSSVEMARFNGFHGLDLHGV 137 (355)
Q Consensus 103 ~~~~~~~-~~~r~~fi~~i~~~l~~~~~DGIdiDwE 137 (355)
+.....+ +..|+.+++.+++.+..-.+|||-+|--
T Consensus 41 ~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 41 YQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 3333334 8999999999999999889999999843
No 65
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=72.74 E-value=14 Score=35.22 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=55.3
Q ss_pred HHHHHHHhcCCCcEEEEEE-------cCCc-chhhhhc-CcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-CCccHHHH
Q 041898 79 IFTNTVKHRNPSVVTLLSI-------WGGA-IFSSMIN-QSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-KGTNITKL 148 (355)
Q Consensus 79 ~~~~~lk~~~~~~kvllsi-------GG~~-~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-~~~~~~~~ 148 (355)
.++.++|+. ++.|+-.| ||.. .+..++. ++...--+++.+++..+.|||||--|+=|-.+ .+.+.+++
T Consensus 131 DVIDaaHrN--GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M 208 (553)
T COG4724 131 DVIDAAHRN--GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKM 208 (553)
T ss_pred hhhhhhhcC--CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHH
Confidence 456555544 89888666 3333 4444443 44555578999999999999999999988543 35677888
Q ss_pred HHHHHHHHc
Q 041898 149 GTLFDEWRA 157 (355)
Q Consensus 149 ~~~l~~lr~ 157 (355)
.+|+..+++
T Consensus 209 ~~f~ly~ke 217 (553)
T COG4724 209 RQFMLYSKE 217 (553)
T ss_pred HHHHHHHHh
Confidence 888888886
No 66
>PLN02411 12-oxophytodienoate reductase
Probab=72.54 E-value=12 Score=36.13 Aligned_cols=54 Identities=13% Similarity=0.244 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccC---------CC----------CCccHHHH-HHHHHHHHc--cCCcEEEEEecc
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVL---------PD----------KGTNITKL-GTLFDEWRA--ESQLLLVMTSHH 169 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~---------~~----------~~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~ 169 (355)
+.|++.... .++-|||||+|.--+ |. +.+.|..| .+.|+++|+ +++. |.+.+.+
T Consensus 165 ~~f~~AA~r-A~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~-vgvRiS~ 240 (391)
T PLN02411 165 EHYRQAALN-AIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADR-VGVRVSP 240 (391)
T ss_pred HHHHHHHHH-HHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCe-EEEEEcc
Confidence 345554433 445799999998543 11 11234344 467777777 6665 8888875
No 67
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=71.86 E-value=58 Score=30.81 Aligned_cols=89 Identities=10% Similarity=0.037 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCc----chhhhhc--------CcHH-----HHHHHHHHHHHHHcCCCCEEEEE
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGA----IFSSMIN--------QSSN-----RKSFIKSSVEMARFNGFHGLDLH 135 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~----~~~~~~~--------~~~~-----r~~fi~~i~~~l~~~~~DGIdiD 135 (355)
..+..+++++++|++ |+|+.+-...+. .+..-.. .+.. .+....++.+++.+|..|.+=+|
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 356688899888888 899887766544 1111110 1111 22556889999999999999999
Q ss_pred ccCCCCCccHHHHHHHHHHHHc-cCCcEEE
Q 041898 136 GVLPDKGTNITKLGTLFDEWRA-ESQLLLV 164 (355)
Q Consensus 136 wE~~~~~~~~~~~~~~l~~lr~-~~~~~ls 164 (355)
.-.+.. .+...+..+.+.+|+ .++.++.
T Consensus 214 g~~~~~-~~~~~~~~~~~~i~~~qp~~ii~ 242 (346)
T PF01120_consen 214 GGWPDP-DEDWDSAELYNWIRKLQPDVIIN 242 (346)
T ss_dssp STTSCC-CTHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCcc-ccccCHHHHHHHHHHhCCeEEEe
Confidence 886643 344455666777776 5555543
No 68
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=71.80 E-value=13 Score=37.49 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC----Cc-----c----hh----------hhhcCc---HHHHHHHHHHHHHHHc
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG----GA-----I----FS----------SMINQS---SNRKSFIKSSVEMARF 126 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG----~~-----~----~~----------~~~~~~---~~r~~fi~~i~~~l~~ 126 (355)
....++++++.+|++ |++|++-+== .. . |. --..++ .-|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 456789999989888 8999977511 00 0 10 012234 7788899999999999
Q ss_pred CCCCEEEEEcc
Q 041898 127 NGFHGLDLHGV 137 (355)
Q Consensus 127 ~~~DGIdiDwE 137 (355)
|++||+-||--
T Consensus 236 ~~iDGfR~D~~ 246 (542)
T TIGR02402 236 YHFDGLRLDAV 246 (542)
T ss_pred hCCcEEEEeCH
Confidence 99999999954
No 69
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=71.63 E-value=23 Score=28.38 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCc-chhhhhc-CcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGA-IFSSMIN-QSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~-~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
..+.-+++.+|+. |++|++-|---. .|.+... +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4466677788887 788887764433 4454444 67899999999999999999966655
No 70
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=70.69 E-value=15 Score=35.13 Aligned_cols=121 Identities=16% Similarity=0.281 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcCCc-------c--hhh-----------------hhcCc---HHHHHHHHHHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIWGGA-------I--FSS-----------------MINQS---SNRKSFIKSSVEMA 124 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGG~~-------~--~~~-----------------~~~~~---~~r~~fi~~i~~~l 124 (355)
-..++++++.+|++ +.|+++-|.-.+ . ++. .++.+ .-++.|++......
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~ 159 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAK 159 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888 678887772211 0 000 11111 12344555554444
Q ss_pred HcCCCCEEEEEccC---------CC----------CCccHHHH-HHHHHHHHc--cCCcEEEEEeccCCcccccCCCh--
Q 041898 125 RFNGFHGLDLHGVL---------PD----------KGTNITKL-GTLFDEWRA--ESQLLLVMTSHHLPALESVSYPL-- 180 (355)
Q Consensus 125 ~~~~~DGIdiDwE~---------~~----------~~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~~~~~~~~~yd~-- 180 (355)
+ -|||||+|.--+ |. +.+.+..| .+.+++.|+ +.++.|.+-+.+.......++++
T Consensus 160 ~-AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e 238 (363)
T COG1902 160 E-AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEE 238 (363)
T ss_pred H-cCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHH
Confidence 4 799999998542 11 11333334 466777777 88888999888754412223432
Q ss_pred -----hhhhcc--CcEEEEeeccC
Q 041898 181 -----DSMQRN--LDWIHVLNFDY 197 (355)
Q Consensus 181 -----~~l~~~--vD~v~vm~YD~ 197 (355)
+.|.+. +|++++..-+.
T Consensus 239 ~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 239 AVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred HHHHHHHHHhcCCccEEEeecccc
Confidence 333333 69999877544
No 71
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=69.93 E-value=68 Score=30.10 Aligned_cols=105 Identities=7% Similarity=0.086 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC------ccHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG------TNIT 146 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~------~~~~ 146 (355)
..+.+.+.+..++++. ++.++++|+|.+ .+.++ .+++.+++.|+|+|+|++-.|... +..+
T Consensus 85 g~d~~~~~i~~~~~~~-~~pvi~sI~g~~-----------~~e~~-~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~ 151 (334)
T PRK07565 85 GPEEYLELIRRAKEAV-DIPVIASLNGSS-----------AGGWV-DYARQIEQAGADALELNIYYLPTDPDISGAEVEQ 151 (334)
T ss_pred CHHHHHHHHHHHHHhc-CCcEEEEeccCC-----------HHHHH-HHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHH
Confidence 3444444544555543 689999998842 12333 455556777999999998653221 1123
Q ss_pred HHHHHHHHHHccCCcEEEEEeccCCcccccCCCh-hhh-hccCcEEEEe
Q 041898 147 KLGTLFDEWRAESQLLLVMTSHHLPALESVSYPL-DSM-QRNLDWIHVL 193 (355)
Q Consensus 147 ~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~-~~l-~~~vD~v~vm 193 (355)
.+.++++++++..+.-|.+-+.+...... ++ ..+ ..-+|.|.+.
T Consensus 152 ~~~eil~~v~~~~~iPV~vKl~p~~~~~~---~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 152 RYLDILRAVKSAVSIPVAVKLSPYFSNLA---NMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCchhHH---HHHHHHHHcCCCeEEEE
Confidence 46788888887334455555544211111 12 222 2347888764
No 72
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=69.77 E-value=51 Score=30.65 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC-CCEEEEEccCCCC------CccH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG-FHGLDLHGVLPDK------GTNI 145 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGIdiDwE~~~~------~~~~ 145 (355)
..+.+.+.+..+++..++..+++||-|.+ . +.+. .+++.++..+ .|.|+|+.--|.. ..|.
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G~~--------~---~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~ 142 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVGLS--------P---EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIAYDF 142 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCc--------H---HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCccccccCH
Confidence 33444444445665555688999998853 1 2232 3334456777 8999999987732 1345
Q ss_pred HHHHHHHHHHHccCCcEEEEEeccC
Q 041898 146 TKLGTLFDEWRAESQLLLVMTSHHL 170 (355)
Q Consensus 146 ~~~~~~l~~lr~~~~~~ls~a~~~~ 170 (355)
+.+.++++++++....-+.+-+++.
T Consensus 143 ~~~~~i~~~v~~~~~~Pv~vKlsp~ 167 (310)
T PRK02506 143 ETTEQILEEVFTYFTKPLGVKLPPY 167 (310)
T ss_pred HHHHHHHHHHHHhcCCccEEecCCC
Confidence 6678888888872233455666654
No 73
>PRK03705 glycogen debranching enzyme; Provisional
Probab=68.87 E-value=16 Score=37.82 Aligned_cols=81 Identities=7% Similarity=0.005 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcC-------C-c-c----------------------hh----h-hhcCcHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWG-------G-A-I----------------------FS----S-MINQSSNRKSFIK 118 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG-------~-~-~----------------------~~----~-~~~~~~~r~~fi~ 118 (355)
..++++++.+|++ |+||++=+== . . . ++ . -..++.-|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688999989887 8999976510 0 0 0 00 0 1135677889999
Q ss_pred HHHHHHHcCCCCEEEEEccCCCC-CccHHHHHHHHHHHHc
Q 041898 119 SSVEMARFNGFHGLDLHGVLPDK-GTNITKLGTLFDEWRA 157 (355)
Q Consensus 119 ~i~~~l~~~~~DGIdiDwE~~~~-~~~~~~~~~~l~~lr~ 157 (355)
++.-|++++++||.-||--.... ..+...-..++++++.
T Consensus 320 ~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~ 359 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQN 359 (658)
T ss_pred HHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhh
Confidence 99999999999999999743221 1111112346777765
No 74
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=68.78 E-value=18 Score=31.39 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=47.5
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhh
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
.+-|..+|. ++++. +.+.|.|-|-+.+|-. .....+++.+|+ .+....+++-+.+. .+ .+..
T Consensus 62 vHLMv~~P~---~~i~~----~~~~g~~~i~~H~E~~------~~~~~~i~~ik~-~g~k~GialnP~T~-~~---~~~~ 123 (201)
T PF00834_consen 62 VHLMVENPE---RYIEE----FAEAGADYITFHAEAT------EDPKETIKYIKE-AGIKAGIALNPETP-VE---ELEP 123 (201)
T ss_dssp EEEESSSGG---GHHHH----HHHHT-SEEEEEGGGT------TTHHHHHHHHHH-TTSEEEEEE-TTS--GG---GGTT
T ss_pred EEeeeccHH---HHHHH----HHhcCCCEEEEcccch------hCHHHHHHHHHH-hCCCEEEEEECCCC-ch---HHHH
Confidence 456677773 34444 4555999999999922 234456777774 35666777765432 22 3566
Q ss_pred hhccCcEEEEeecc
Q 041898 183 MQRNLDWIHVLNFD 196 (355)
Q Consensus 183 l~~~vD~v~vm~YD 196 (355)
+.+.+|+|.+|+-+
T Consensus 124 ~l~~vD~VlvMsV~ 137 (201)
T PF00834_consen 124 YLDQVDMVLVMSVE 137 (201)
T ss_dssp TGCCSSEEEEESS-
T ss_pred HhhhcCEEEEEEec
Confidence 77889999999965
No 75
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=68.44 E-value=27 Score=33.38 Aligned_cols=142 Identities=11% Similarity=0.093 Sum_probs=77.9
Q ss_pred ccEEEEEEEEEeCCCcE-----E-EeCCCChHHHHHHHHHHHhcCCCcEEEEEE--cCCc--c-h--------h------
Q 041898 50 FSHLMCAFAFINSSTYN-----I-FINSTSEQFFVIFTNTVKHRNPSVVTLLSI--WGGA--I-F--------S------ 104 (355)
Q Consensus 50 ~thvi~~f~~~~~~~~~-----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsi--GG~~--~-~--------~------ 104 (355)
+--||.....+.+++.. . ...++.-+.++++++.+|++ +.|+++-| +|.. . . +
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 44556666666655421 1 11222346678888888877 78888776 2211 0 0 0
Q ss_pred --------hhhcCc---HHHHHHHHHHHHHHHcCCCCEEEEEccC---------CCC----------CccHHH-HHHHHH
Q 041898 105 --------SMINQS---SNRKSFIKSSVEMARFNGFHGLDLHGVL---------PDK----------GTNITK-LGTLFD 153 (355)
Q Consensus 105 --------~~~~~~---~~r~~fi~~i~~~l~~~~~DGIdiDwE~---------~~~----------~~~~~~-~~~~l~ 153 (355)
..++.+ .-.+.|++... .+++-|||||+|+--+ |.. .+.+.. ..+.++
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~ 208 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLE 208 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHH
Confidence 001100 23445666544 4455799999998765 221 122323 357778
Q ss_pred HHHc--cCCcEEEEEeccCCccccc-CCC-------hhhhhccCcEEEEee
Q 041898 154 EWRA--ESQLLLVMTSHHLPALESV-SYP-------LDSMQRNLDWIHVLN 194 (355)
Q Consensus 154 ~lr~--~~~~~ls~a~~~~~~~~~~-~yd-------~~~l~~~vD~v~vm~ 194 (355)
++|+ +.++.|.+-+.+....... +.+ .+.|.+.+|++++-.
T Consensus 209 aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 209 DTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred HHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 8888 7788888888754321111 111 134555688888743
No 76
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=67.58 E-value=19 Score=37.57 Aligned_cols=82 Identities=10% Similarity=0.051 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEc-------CCc----chh---------------------------hhhcCcHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIW-------GGA----IFS---------------------------SMINQSSNRKS 115 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiG-------G~~----~~~---------------------------~~~~~~~~r~~ 115 (355)
...++++++.+|++ +++|++-+= +.. .+. .-..++.-|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 45689999999888 899997651 100 000 01125667888
Q ss_pred HHHHHHHHHHcCCCCEEEEEccCCCC--CccHHHHHHHHHHHHc
Q 041898 116 FIKSSVEMARFNGFHGLDLHGVLPDK--GTNITKLGTLFDEWRA 157 (355)
Q Consensus 116 fi~~i~~~l~~~~~DGIdiDwE~~~~--~~~~~~~~~~l~~lr~ 157 (355)
+++++.-|++++++||+-||.-.... .........|+++|++
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 88999999999999999999753221 1111223467788876
No 77
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=67.37 E-value=1.1e+02 Score=28.91 Aligned_cols=142 Identities=13% Similarity=0.158 Sum_probs=74.0
Q ss_pred CccEEEEEEEEEeCCCc----EEEe-CCCChHHHHHHHHHHHhcCCCcEEEEEE--cCCc-ch-------hh--------
Q 041898 49 LFSHLMCAFAFINSSTY----NIFI-NSTSEQFFVIFTNTVKHRNPSVVTLLSI--WGGA-IF-------SS-------- 105 (355)
Q Consensus 49 ~~thvi~~f~~~~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi--GG~~-~~-------~~-------- 105 (355)
.+.-|+.....+++++. .+.. .++..+.++++++.+|++ +.|+++-| +|.. .. +.
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~ 127 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSK 127 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCC
Confidence 34455655555655431 1111 222346678888888876 78888777 2221 10 00
Q ss_pred ---hhcCc---HHHHHHHHHHHHHHHcCCCCEEEEEccC---------CCC----------CccHHHH-HHHHHHHHccC
Q 041898 106 ---MINQS---SNRKSFIKSSVEMARFNGFHGLDLHGVL---------PDK----------GTNITKL-GTLFDEWRAES 159 (355)
Q Consensus 106 ---~~~~~---~~r~~fi~~i~~~l~~~~~DGIdiDwE~---------~~~----------~~~~~~~-~~~l~~lr~~~ 159 (355)
.++.+ .-.+.|++... .+++.|||||+|+--+ |.. .+.+..| .+.++++|+.-
T Consensus 128 ~p~~mt~eeI~~ii~~f~~aA~-~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~ 206 (337)
T PRK13523 128 TPVEMTKEQIKETVLAFKQAAV-RAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW 206 (337)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 01100 23445666554 4455799999998653 311 1223333 35667777633
Q ss_pred CcEEEEEeccCCcccccCCCh-------hhhhcc-CcEEEEee
Q 041898 160 QLLLVMTSHHLPALESVSYPL-------DSMQRN-LDWIHVLN 194 (355)
Q Consensus 160 ~~~ls~a~~~~~~~~~~~yd~-------~~l~~~-vD~v~vm~ 194 (355)
++.|++.+.+.. ....+++. +.|.+. +|+|+|-.
T Consensus 207 ~~~v~vRis~~d-~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 207 DGPLFVRISASD-YHPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCCeEEEecccc-cCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 566777766532 22223332 233332 79999855
No 78
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.29 E-value=19 Score=37.15 Aligned_cols=61 Identities=13% Similarity=0.201 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC-------Cc--chh----------------------hhhcCcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG-------GA--IFS----------------------SMINQSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG-------~~--~~~----------------------~~~~~~~~r~~fi~~i~ 121 (355)
+...++.+++.+|++ |++|+|-+=- +. .|. --..+++-|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 467799999999988 8999977511 10 000 01135778889999999
Q ss_pred HHHHcCCCCEEEEE
Q 041898 122 EMARFNGFHGLDLH 135 (355)
Q Consensus 122 ~~l~~~~~DGIdiD 135 (355)
-++++|++||+-+|
T Consensus 296 ~W~~~~~iDG~R~D 309 (633)
T PRK12313 296 FWLDEYHLDGLRVD 309 (633)
T ss_pred HHHHHhCCcEEEEc
Confidence 99999999999999
No 79
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=67.05 E-value=31 Score=32.16 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=47.8
Q ss_pred EEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcC----Cc-c---------------------------hhhhhcCcHHH
Q 041898 66 NIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWG----GA-I---------------------------FSSMINQSSNR 113 (355)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG----~~-~---------------------------~~~~~~~~~~r 113 (355)
.+.+..+.-+..+++++.||++ ++||++.+-- .. . ---=+.+|+.|
T Consensus 57 ~f~~d~~~FPdp~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~ 134 (319)
T cd06591 57 EWKFDPERFPDPKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAR 134 (319)
T ss_pred eEEEChhhCCCHHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHH
Confidence 4444433223456788888877 7998886611 00 0 00113467788
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCC
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~ 139 (355)
+-+.+.+.+.+.+.|+||+=+|+-.|
T Consensus 135 ~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 135 EYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 88888888888899999999998654
No 80
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=66.88 E-value=40 Score=32.13 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEccCC-------------------CCCccHHHH-HHHHHHHHc--cCCcEEEEEeccC
Q 041898 113 RKSFIKSSVEMARFNGFHGLDLHGVLP-------------------DKGTNITKL-GTLFDEWRA--ESQLLLVMTSHHL 170 (355)
Q Consensus 113 r~~fi~~i~~~l~~~~~DGIdiDwE~~-------------------~~~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~~ 170 (355)
.+.|++.. +..++-|||||+|+--+- ++.+++..| .+.++++|+ +++. |.+.+.+.
T Consensus 158 i~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~-igvRis~~ 235 (362)
T PRK10605 158 VNDFRQAI-ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADR-IGIRISPL 235 (362)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCe-EEEEECCc
Confidence 34455544 444557999999985431 112333334 467777777 5554 77777653
Q ss_pred C--cccccCCCh--------hhhhcc-CcEEEEeec
Q 041898 171 P--ALESVSYPL--------DSMQRN-LDWIHVLNF 195 (355)
Q Consensus 171 ~--~~~~~~yd~--------~~l~~~-vD~v~vm~Y 195 (355)
. .....+++. +.|.+. +|+|+|..-
T Consensus 236 ~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 236 GTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 2 112223433 233333 799999753
No 81
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=66.01 E-value=27 Score=31.64 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~ 140 (355)
+..+++++.||++ ++|+++.+-- .-|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 66 pdp~~~i~~l~~~--g~~~~~~~~P-----------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 66 PNPKSMIDELHDN--GVKLVLWIDP-----------YIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCh-----------hHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 4467788889887 8999998733 227778888888878999999999986554
No 82
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=65.64 E-value=20 Score=36.80 Aligned_cols=62 Identities=15% Similarity=0.263 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC-------Cc--ch-------------------hh---hhcCcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG-------GA--IF-------------------SS---MINQSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG-------~~--~~-------------------~~---~~~~~~~r~~fi~~i~ 121 (355)
+...++.+++.+|++ |++|++-+-- +. .| .. -..++.-|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 456799999999888 8999976511 00 00 00 1145788899999999
Q ss_pred HHHHcCCCCEEEEEc
Q 041898 122 EMARFNGFHGLDLHG 136 (355)
Q Consensus 122 ~~l~~~~~DGIdiDw 136 (355)
-++++|++||+-||-
T Consensus 282 ~W~~ey~iDG~R~D~ 296 (613)
T TIGR01515 282 YWAEFYHIDGLRVDA 296 (613)
T ss_pred HHHHHhCCcEEEEcC
Confidence 999999999999996
No 83
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=65.57 E-value=1e+02 Score=28.28 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=81.1
Q ss_pred CCccEEEE-EEEEEeCCCcE--EEeCCCC----hHHHHHHHHHHHhcCCCcEEEEEEc--CCc-----c-----------
Q 041898 48 ALFSHLMC-AFAFINSSTYN--IFINSTS----EQFFVIFTNTVKHRNPSVVTLLSIW--GGA-----I----------- 102 (355)
Q Consensus 48 ~~~thvi~-~f~~~~~~~~~--~~~~~~~----~~~~~~~~~~lk~~~~~~kvllsiG--G~~-----~----------- 102 (355)
-.+++|++ +|...+++|.. +.+++.. .+.+..+.=.++.+. ++||...+. +|. .
T Consensus 29 ~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~ 107 (294)
T PF14883_consen 29 MGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDP 107 (294)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCC
Confidence 45788887 66666666522 3445442 344445442455543 788874442 221 0
Q ss_pred --hhhh-hcCcHHHHHHHHHHHHHHHcC-CCCEEEEE-------ccCCCCCc------cHHHHHHHHHHHHc-----cCC
Q 041898 103 --FSSM-INQSSNRKSFIKSSVEMARFN-GFHGLDLH-------GVLPDKGT------NITKLGTLFDEWRA-----ESQ 160 (355)
Q Consensus 103 --~~~~-~~~~~~r~~fi~~i~~~l~~~-~~DGIdiD-------wE~~~~~~------~~~~~~~~l~~lr~-----~~~ 160 (355)
...+ .-+++. .+.|++|-+=|.+| .||||=|. +|.+.-.. ....++.|-.+|++ .++
T Consensus 108 ~~y~RLSPf~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~rp~ 186 (294)
T PF14883_consen 108 DGYRRLSPFDPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYRPD 186 (294)
T ss_pred CCceecCCCCHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 0001 013333 35688888888888 89999884 34221111 12356778888877 333
Q ss_pred cEEEEEeccC----C--cccccCCChhhhhccCcEEEEeeccCcC
Q 041898 161 LLLVMTSHHL----P--ALESVSYPLDSMQRNLDWIHVLNFDYYL 199 (355)
Q Consensus 161 ~~ls~a~~~~----~--~~~~~~yd~~~l~~~vD~v~vm~YD~~~ 199 (355)
+...--+.+. | ..|- .-++..+.+.-||.-+|+.-+..
T Consensus 187 lkTARNiya~pvl~P~se~Wf-AQnl~~fl~~YD~taimAMPymE 230 (294)
T PF14883_consen 187 LKTARNIYAEPVLNPESEAWF-AQNLDDFLKAYDYTAIMAMPYME 230 (294)
T ss_pred chhhhcccccccCCcchhhHH-HHhHHHHHHhCCeeheeccchhc
Confidence 3322222221 1 1111 12678888888999999987653
No 84
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=65.40 E-value=63 Score=29.82 Aligned_cols=114 Identities=16% Similarity=0.225 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHH------------------HHHHHHHHHHHcCCCCEEEE
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRK------------------SFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~------------------~fi~~i~~~l~~~~~DGIdi 134 (355)
|-....++.+++| +.++|||+-+ .+++..+||..+. .+.+..+..|++ .||++
T Consensus 102 D~~k~ieiakRAk--~~GmKVl~dF----HYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~p 172 (403)
T COG3867 102 DLKKAIEIAKRAK--NLGMKVLLDF----HYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILP 172 (403)
T ss_pred hHHHHHHHHHHHH--hcCcEEEeec----cchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCc
Confidence 3333444444444 5599999877 2333333332221 244556666666 46778
Q ss_pred EccCCCC-----------C-ccHHHHHHHHHH----HHc-cCCcEEEEEeccCCcccccCCChhhhh-ccCcE-EEEeec
Q 041898 135 HGVLPDK-----------G-TNITKLGTLFDE----WRA-ESQLLLVMTSHHLPALESVSYPLDSMQ-RNLDW-IHVLNF 195 (355)
Q Consensus 135 DwE~~~~-----------~-~~~~~~~~~l~~----lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~-~~vD~-v~vm~Y 195 (355)
||-..+. . .+.+.+..|+++ +|+ .+...+.+-+..+........-+.+|. ..||| |+-|+|
T Consensus 173 dmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~Sy 252 (403)
T COG3867 173 DMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSY 252 (403)
T ss_pred cceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeec
Confidence 8865432 1 134445555543 344 555555444443222111122345554 46777 333444
No 85
>PRK05402 glycogen branching enzyme; Provisional
Probab=65.06 E-value=22 Score=37.38 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=46.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC-------Cc--c-------------------hh---hhhcCcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG-------GA--I-------------------FS---SMINQSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG-------~~--~-------------------~~---~~~~~~~~r~~fi~~i~ 121 (355)
+...++.+++.+|++ |++|+|-+=- +. . +. --..++.-|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 467799999999887 8999987511 00 0 00 02335678888999999
Q ss_pred HHHHcCCCCEEEEEc
Q 041898 122 EMARFNGFHGLDLHG 136 (355)
Q Consensus 122 ~~l~~~~~DGIdiDw 136 (355)
-|++++++||+-+|-
T Consensus 391 ~W~~e~~iDG~R~D~ 405 (726)
T PRK05402 391 YWLEEFHIDGLRVDA 405 (726)
T ss_pred HHHHHhCCcEEEECC
Confidence 999999999999993
No 86
>PRK03995 hypothetical protein; Provisional
Probab=64.51 E-value=16 Score=33.20 Aligned_cols=66 Identities=8% Similarity=0.049 Sum_probs=41.6
Q ss_pred CCcEEEEEEcCCc---chhhhhc-----------CcHHHHHHHHHHHHHHHcC--CCCEEEEEccCCCCCccHHHHHHHH
Q 041898 89 PSVVTLLSIWGGA---IFSSMIN-----------QSSNRKSFIKSSVEMARFN--GFHGLDLHGVLPDKGTNITKLGTLF 152 (355)
Q Consensus 89 ~~~kvllsiGG~~---~~~~~~~-----------~~~~r~~fi~~i~~~l~~~--~~DGIdiDwE~~~~~~~~~~~~~~l 152 (355)
...++++.|||.- .|.+++. +-..-.-=-+.+.+.+++. ++|.+-|||....+ .+++.+..++
T Consensus 179 ~~~~~~iGiGGgHYapr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~~l 257 (267)
T PRK03995 179 EKFKPAIGIGGGHYAPKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIEFL 257 (267)
T ss_pred cCCCEEEEECCCCccHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHHHH
Confidence 4789999999964 2333322 1110000012355556664 78999999986655 7888888888
Q ss_pred HHH
Q 041898 153 DEW 155 (355)
Q Consensus 153 ~~l 155 (355)
+++
T Consensus 258 e~~ 260 (267)
T PRK03995 258 EEL 260 (267)
T ss_pred HHC
Confidence 876
No 87
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=63.75 E-value=38 Score=34.56 Aligned_cols=109 Identities=10% Similarity=-0.081 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCCcEEEEEEcCCc------------------chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccC
Q 041898 77 FVIFTNTVKHRNPSVVTLLSIWGGA------------------IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGG~~------------------~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~ 138 (355)
-..+++++|++.|++++ ..+||.. .+..++..--.-.+..+.+++.+++..-|-+-+ ..+
T Consensus 242 gA~Li~aLk~~~P~i~~-~GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIl-ID~ 319 (608)
T PRK01021 242 GGNLLKEIKALYPDIHC-FGVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYKTILKTNPRTVIC-IDF 319 (608)
T ss_pred HHHHHHHHHhcCCCcEE-EEEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-eCC
Confidence 35678899999998764 5788832 344455544455567788889999988887655 223
Q ss_pred CCCCccHHHHHHHHHHHHc-cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEee
Q 041898 139 PDKGTNITKLGTLFDEWRA-ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194 (355)
Q Consensus 139 ~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~ 194 (355)
|+= | ..+.|++|+ +-+..+---++|.-+.|.. .-.+.+.+++|.+.+..
T Consensus 320 PgF-----N-lrLAK~lkk~Gi~ipviyYVsPqVWAWR~-~Rikki~k~vD~ll~If 369 (608)
T PRK01021 320 PDF-----H-FLLIKKLRKRGYKGKIVHYVCPSIWAWRP-KRKTILEKYLDLLLLIL 369 (608)
T ss_pred CCC-----C-HHHHHHHHhcCCCCCEEEEECccceeeCc-chHHHHHHHhhhheecC
Confidence 321 1 346777876 4212334444555677763 36899999999876643
No 88
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=63.52 E-value=37 Score=30.10 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=53.1
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEeccCCcccccCCCh
Q 041898 102 IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTSHHLPALESVSYPL 180 (355)
Q Consensus 102 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~~~~~~~~~~~yd~ 180 (355)
..+-|+.+| +++++ .+.+.|.|-|-+..|-. .+...+++.+|+ +.+....+++-|.+.. + .+
T Consensus 72 DvHLMv~~P---~~~i~----~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~-~---~i 134 (228)
T PRK08091 72 DVHLMVRDQ---FEVAK----ACVAAGADIVTLQVEQT------HDLALTIEWLAKQKTTVLIGLCLCPETPI-S---LL 134 (228)
T ss_pred EEEeccCCH---HHHHH----HHHHhCCCEEEEcccCc------ccHHHHHHHHHHCCCCceEEEEECCCCCH-H---HH
Confidence 345566666 34443 44456999999999942 235677788876 5545778887765422 2 35
Q ss_pred hhhhccCcEEEEeecc
Q 041898 181 DSMQRNLDWIHVLNFD 196 (355)
Q Consensus 181 ~~l~~~vD~v~vm~YD 196 (355)
..+.+.+|+|.+|+-+
T Consensus 135 ~~~l~~vD~VLiMtV~ 150 (228)
T PRK08091 135 EPYLDQIDLIQILTLD 150 (228)
T ss_pred HHHHhhcCEEEEEEEC
Confidence 6777889999999986
No 89
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=63.49 E-value=1.2e+02 Score=27.96 Aligned_cols=89 Identities=8% Similarity=0.081 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcC--CCCEEEEEccCCCCC-------ccHHHHHHHHHHHHccCC
Q 041898 90 SVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFN--GFHGLDLHGVLPDKG-------TNITKLGTLFDEWRAESQ 160 (355)
Q Consensus 90 ~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~--~~DGIdiDwE~~~~~-------~~~~~~~~~l~~lr~~~~ 160 (355)
+..++++|.|.+ + +.++ .+++.+++. ++|+|||++--|... .+.+...++++++|+.-+
T Consensus 90 ~~pl~~qi~g~~--------~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 90 PTPLIASVYGSS--------V---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred CCcEEEEeecCC--------H---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 467999998842 2 2333 344445543 499999998866431 355667888999987435
Q ss_pred cEEEEEeccCCcccccCCChh-hhh-ccCcEEEEe
Q 041898 161 LLLVMTSHHLPALESVSYPLD-SMQ-RNLDWIHVL 193 (355)
Q Consensus 161 ~~ls~a~~~~~~~~~~~yd~~-~l~-~~vD~v~vm 193 (355)
+.|++-+.+.... ...+. .+. .-+|.+++.
T Consensus 158 ~pv~vKi~~~~~~---~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 158 VPVFAKLSPNVTD---ITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred CCEEEECCCChhh---HHHHHHHHHHcCCCEEEEE
Confidence 6777777643211 11122 222 237999874
No 90
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=63.12 E-value=40 Score=32.22 Aligned_cols=108 Identities=11% Similarity=0.035 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEEcCCc------------------chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccC
Q 041898 77 FVIFTNTVKHRNPSVVTLLSIWGGA------------------IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGG~~------------------~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~ 138 (355)
-..+++.+|++.|++. ++.|||.. .|..++..--.--+-++.+++.+.+..-|.+-+ .
T Consensus 17 Ga~LikaLk~~~~~~e-fvGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~-I-- 92 (381)
T COG0763 17 GAGLIKALKARYPDVE-FVGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLIL-I-- 92 (381)
T ss_pred HHHHHHHHHhhCCCeE-EEEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-e--
Confidence 4567889999998776 46888843 333344332233345567777777788886532 1
Q ss_pred CCCCccHHHH-HHHHHHHHc-cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEee
Q 041898 139 PDKGTNITKL-GTLFDEWRA-ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194 (355)
Q Consensus 139 ~~~~~~~~~~-~~~l~~lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~ 194 (355)
|...| ..+.+.||+ +++.-+.--+.|+-|.|... -...+.+++|++....
T Consensus 93 -----DsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~-Ra~~i~~~~D~lLail 144 (381)
T COG0763 93 -----DSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPK-RAVKIAKYVDHLLAIL 144 (381)
T ss_pred -----CCCCCchHHHHHHHHhCCCCCeEEEECcceeeechh-hHHHHHHHhhHeeeec
Confidence 12223 467888998 65565555666667777743 4788999999987643
No 91
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=62.81 E-value=51 Score=30.90 Aligned_cols=76 Identities=8% Similarity=-0.040 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----CccHHHHHHHHHHHHc--c---
Q 041898 89 PSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----GTNITKLGTLFDEWRA--E--- 158 (355)
Q Consensus 89 ~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----~~~~~~~~~~l~~lr~--~--- 158 (355)
.+..+++||+|... . ..+..-+.|++.+-++ .. ..|+|+|++--|.. .++.+.+.++++++|+ .
T Consensus 127 ~~~plivsi~g~~~-~---~~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKD-T---PLEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCC-C---cccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcc
Confidence 46889999998530 0 0112234455444443 33 38999999976643 2456677888899887 2
Q ss_pred CCcEEEEEeccC
Q 041898 159 SQLLLVMTSHHL 170 (355)
Q Consensus 159 ~~~~ls~a~~~~ 170 (355)
+++-|.+-+++.
T Consensus 201 ~~~Pv~vKl~~~ 212 (327)
T cd04738 201 KKVPLLVKIAPD 212 (327)
T ss_pred cCCCeEEEeCCC
Confidence 236677777643
No 92
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=62.26 E-value=40 Score=31.82 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=28.2
Q ss_pred hcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC
Q 041898 107 INQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140 (355)
Q Consensus 107 ~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~ 140 (355)
..|++.|+=+.+.+.+++.+.|+||+-+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 4577888888888888899999999999987654
No 93
>PLN02877 alpha-amylase/limit dextrinase
Probab=61.96 E-value=43 Score=36.16 Aligned_cols=79 Identities=6% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEE-------cC-Cc---chhh-----------------------h-hcCcHHHHHHHHHH
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSI-------WG-GA---IFSS-----------------------M-INQSSNRKSFIKSS 120 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsi-------GG-~~---~~~~-----------------------~-~~~~~~r~~fi~~i 120 (355)
.++++++.+|++ +++|++-+ +| |. .+.. . ..++.-|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 478889888877 89999775 11 10 1111 0 11245577789999
Q ss_pred HHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHH
Q 041898 121 VEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr 156 (355)
.-|+++|++||.-||--.....+......+.|+++.
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i~~~tm~~~~~~L~~i~ 580 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHLMKRTMVRAKDALQSLT 580 (970)
T ss_pred HHHHHHhCCCEEEEEccccccHHHHHHHHHHHHHHh
Confidence 999999999999999875544344445555666664
No 94
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=61.71 E-value=82 Score=29.09 Aligned_cols=106 Identities=14% Similarity=0.039 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC-CCEEEEEccCCCC---CccHHHHHHH
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG-FHGLDLHGVLPDK---GTNITKLGTL 151 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGIdiDwE~~~~---~~~~~~~~~~ 151 (355)
.+..+++.++++ +..++..+-.+. ...-.-+.+.-+.+.+.+++-|+..+ +|||-|+.=.-.. .+|. =..|
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A-~P~G~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~--EG~L 120 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAA-EPGGPVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDG--EGDL 120 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE--SEE-B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSH--HHHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeee-cCCCcccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCc--hHHH
Confidence 345566666665 677776664332 00111234566778899999999986 9999999864332 1233 3579
Q ss_pred HHHHHc--cCCcEEEEEeccCCcccccCCChhhhhccCcEEEE
Q 041898 152 FDEWRA--ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHV 192 (355)
Q Consensus 152 l~~lr~--~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~v 192 (355)
++++|+ +++..|.+++-...+ --+.+.+.+|.+..
T Consensus 121 l~rvR~~vGp~vpI~~tlDlHaN------vs~~mv~~ad~~~~ 157 (292)
T PF07364_consen 121 LRRVRAIVGPDVPIAATLDLHAN------VSPRMVEAADIIVG 157 (292)
T ss_dssp HHHHHHHHTTTSEEEEEE-TT----------HHHHHH-SEEEE
T ss_pred HHHHHHHhCCCCeEEEEeCCCCC------ccHHHHHhCCEEEE
Confidence 999999 888888888765321 23677888888754
No 95
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=61.08 E-value=38 Score=29.13 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=51.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhh
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
.+-++.+|. + .++-+.+-|.+.+-|.+|-. . + ...+++.+| .++....+++-+++.. + ++..
T Consensus 69 ~HmMV~~Pe---q----~V~~~a~agas~~tfH~E~~-q--~---~~~lv~~ir-~~Gmk~G~alkPgT~V-e---~~~~ 130 (224)
T KOG3111|consen 69 VHMMVENPE---Q----WVDQMAKAGASLFTFHYEAT-Q--K---PAELVEKIR-EKGMKVGLALKPGTPV-E---DLEP 130 (224)
T ss_pred EEEeecCHH---H----HHHHHHhcCcceEEEEEeec-c--C---HHHHHHHHH-HcCCeeeEEeCCCCcH-H---HHHH
Confidence 345566663 2 34445567999999999932 1 2 567777777 5567778888765432 2 4566
Q ss_pred hhccCcEEEEeecc
Q 041898 183 MQRNLDWIHVLNFD 196 (355)
Q Consensus 183 l~~~vD~v~vm~YD 196 (355)
+.+.+|++.|||-.
T Consensus 131 ~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 131 LAEHVDMVLVMTVE 144 (224)
T ss_pred hhccccEEEEEEec
Confidence 67789999999975
No 96
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=60.65 E-value=46 Score=31.10 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=47.8
Q ss_pred HHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHHH
Q 041898 84 VKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTLF 152 (355)
Q Consensus 84 lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~l 152 (355)
++.......+.+.|+|. |+ +.|++ .++.++++|+|+|||+.--|.. ..+.+...+++
T Consensus 48 l~~~~~e~p~~vQl~g~--------~p---~~~~~-aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv 115 (318)
T TIGR00742 48 LKFSPEESPVALQLGGS--------DP---NDLAK-CAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCV 115 (318)
T ss_pred cccCCCCCcEEEEEccC--------CH---HHHHH-HHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHH
Confidence 34444467788999984 33 33333 4455667899999999976642 14555667888
Q ss_pred HHHHccCCcEEEEEecc
Q 041898 153 DEWRAESQLLLVMTSHH 169 (355)
Q Consensus 153 ~~lr~~~~~~ls~a~~~ 169 (355)
+++++.-+.-+|+-+..
T Consensus 116 ~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 116 KAMQEAVNIPVTVKHRI 132 (318)
T ss_pred HHHHHHhCCCeEEEEec
Confidence 88887334456666654
No 97
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=59.95 E-value=1e+02 Score=25.76 Aligned_cols=116 Identities=5% Similarity=0.024 Sum_probs=64.7
Q ss_pred CCCccEEEEEEEEEeCCCcE-EEe-----CCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc-chhhhhcCcHHHHHHHHH
Q 041898 47 SALFSHLMCAFAFINSSTYN-IFI-----NSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA-IFSSMINQSSNRKSFIKS 119 (355)
Q Consensus 47 ~~~~thvi~~f~~~~~~~~~-~~~-----~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~-~~~~~~~~~~~r~~fi~~ 119 (355)
.-.|++||+.+........- ... .......+..+++.+.+. |+||.++++-+. -|.. .+.+....+.+.
T Consensus 31 ~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~~~~w~~--~~~~~~~~~~~~ 106 (166)
T PF14488_consen 31 AIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFDPDYWDQ--GDLDWEAERNKQ 106 (166)
T ss_pred HcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCCchhhhc--cCHHHHHHHHHH
Confidence 34688899887655432100 001 011334566677655555 899999999776 4442 555555444444
Q ss_pred HHHHHHc-C----CCCEEEEEccCCCC-CccHHHHHHHHHHHHc-cCCcEEEEE
Q 041898 120 SVEMARF-N----GFHGLDLHGVLPDK-GTNITKLGTLFDEWRA-ESQLLLVMT 166 (355)
Q Consensus 120 i~~~l~~-~----~~DGIdiDwE~~~~-~~~~~~~~~~l~~lr~-~~~~~ls~a 166 (355)
+++-+.+ | .|.|-=|-.|.... ....+.+..|.+.+++ .+++-+.|+
T Consensus 107 v~~el~~~yg~h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 107 VADELWQRYGHHPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHHcCCCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEEe
Confidence 4443332 2 59999999994332 2334445555555555 444555544
No 98
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=59.86 E-value=84 Score=29.71 Aligned_cols=99 Identities=8% Similarity=-0.044 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----CccHHHHHHHHHHHHc--cC--
Q 041898 89 PSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----GTNITKLGTLFDEWRA--ES-- 159 (355)
Q Consensus 89 ~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----~~~~~~~~~~l~~lr~--~~-- 159 (355)
.++.+++||+|.. .......-+.|++.+.++ .. +.|+++|++--|.. .++.+.+.++++++|+ +.
T Consensus 136 ~~~pvivsI~~~~----~~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNK----DTPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCC----CCCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccc
Confidence 4688999998842 001112334555555544 34 49999999976643 3456678889999998 31
Q ss_pred -CcEEEEEeccCCcccccCCCh-hhhh-ccCcEEEEee
Q 041898 160 -QLLLVMTSHHLPALESVSYPL-DSMQ-RNLDWIHVLN 194 (355)
Q Consensus 160 -~~~ls~a~~~~~~~~~~~yd~-~~l~-~~vD~v~vm~ 194 (355)
++-|.+-+++.... +.--.+ +.+. .-+|.|.+..
T Consensus 210 ~~~PV~vKlsp~~~~-~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 210 GYVPLLVKIAPDLSD-EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred cCCceEEEeCCCCCH-HHHHHHHHHHHHhCCcEEEEeC
Confidence 36677777753211 100111 2222 2478988865
No 99
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=59.34 E-value=57 Score=34.55 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEcc---------CCCC----------CccHHH-HHHHHHHHHc--cCCcEEEEEeccC
Q 041898 113 RKSFIKSSVEMARFNGFHGLDLHGV---------LPDK----------GTNITK-LGTLFDEWRA--ESQLLLVMTSHHL 170 (355)
Q Consensus 113 r~~fi~~i~~~l~~~~~DGIdiDwE---------~~~~----------~~~~~~-~~~~l~~lr~--~~~~~ls~a~~~~ 170 (355)
.+.|++.... +++.|||||+|+-- .|.. -+.+.. ..+.++++|+ +.++.|++-+.+.
T Consensus 550 i~~f~~aA~~-a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~ 628 (765)
T PRK08255 550 RDDFVAAARR-AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH 628 (765)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc
Confidence 4456665544 44579999999865 2321 112222 3467777777 7788999988864
Q ss_pred CcccccCCCh-------hhhhcc-CcEEEEe
Q 041898 171 PALESVSYPL-------DSMQRN-LDWIHVL 193 (355)
Q Consensus 171 ~~~~~~~yd~-------~~l~~~-vD~v~vm 193 (355)
... ..+.+. +.|.+. +|+|+|-
T Consensus 629 ~~~-~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 629 DWV-EGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccc-CCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 322 223322 233332 7999885
No 100
>PRK14706 glycogen branching enzyme; Provisional
Probab=58.79 E-value=36 Score=35.19 Aligned_cols=62 Identities=11% Similarity=0.084 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEc----CCc------------------------chhh---hhcCcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIW----GGA------------------------IFSS---MINQSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG----G~~------------------------~~~~---~~~~~~~r~~fi~~i~ 121 (355)
....++.+++.+|++ +++|++-+= |+. .|.. -..+++-|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 456789999989888 899997651 100 0111 1235678888999999
Q ss_pred HHHHcCCCCEEEEEc
Q 041898 122 EMARFNGFHGLDLHG 136 (355)
Q Consensus 122 ~~l~~~~~DGIdiDw 136 (355)
-|++++++||+-+|-
T Consensus 293 ~W~~e~~iDG~R~Da 307 (639)
T PRK14706 293 KWLQDFHVDGLRVDA 307 (639)
T ss_pred HHHHHhCCCeEEEee
Confidence 999999999999993
No 101
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=58.66 E-value=35 Score=32.96 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcC-----Cc-------ch----------------hhhhcCcHHHHHHHHHHHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIWG-----GA-------IF----------------SSMINQSSNRKSFIKSSVEMAR 125 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGG-----~~-------~~----------------~~~~~~~~~r~~fi~~i~~~l~ 125 (355)
...++.+++.+|++ |+|.-|-+.- .+ .+ .-=+++++.|+-+.+.+.++++
T Consensus 103 P~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~ 180 (394)
T PF02065_consen 103 PNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLR 180 (394)
T ss_dssp TTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHH
Confidence 45688888888877 7888776622 11 00 0114567888889999999999
Q ss_pred cCCCCEEEEEccCCCC----Cc---cHH----HHHHHHHHHHc-cCCcEEEEEecc
Q 041898 126 FNGFHGLDLHGVLPDK----GT---NIT----KLGTLFDEWRA-ESQLLLVMTSHH 169 (355)
Q Consensus 126 ~~~~DGIdiDwE~~~~----~~---~~~----~~~~~l~~lr~-~~~~~ls~a~~~ 169 (355)
++|+|.|-+|+..... +. ... .+-.++++|++ .+++.|......
T Consensus 181 ~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 181 EWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp HTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred hcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 9999999999975321 11 122 34468999998 888888877554
No 102
>PRK08005 epimerase; Validated
Probab=57.29 E-value=38 Score=29.59 Aligned_cols=77 Identities=10% Similarity=0.082 Sum_probs=49.5
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChh
Q 041898 102 IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLD 181 (355)
Q Consensus 102 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~ 181 (355)
..+-|+.+| ++++ +.+.+.|.|-|-+.+|-. .+...+++.+|+ .+....+++-+.+. .+ .+.
T Consensus 62 DvHLMv~~P---~~~i----~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~-~G~k~GlAlnP~Tp-~~---~i~ 123 (210)
T PRK08005 62 SFHLMVSSP---QRWL----PWLAAIRPGWIFIHAESV------QNPSEILADIRA-IGAKAGLALNPATP-LL---PYR 123 (210)
T ss_pred EEEeccCCH---HHHH----HHHHHhCCCEEEEcccCc------cCHHHHHHHHHH-cCCcEEEEECCCCC-HH---HHH
Confidence 346666676 3344 444456999999999932 234567777775 24455666665432 11 345
Q ss_pred hhhccCcEEEEeecc
Q 041898 182 SMQRNLDWIHVLNFD 196 (355)
Q Consensus 182 ~l~~~vD~v~vm~YD 196 (355)
.+.+.+|+|.+|+-+
T Consensus 124 ~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 124 YLALQLDALMIMTSE 138 (210)
T ss_pred HHHHhcCEEEEEEec
Confidence 667889999999976
No 103
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=57.05 E-value=58 Score=30.63 Aligned_cols=72 Identities=8% Similarity=0.139 Sum_probs=45.2
Q ss_pred HHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHHH
Q 041898 84 VKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTLF 152 (355)
Q Consensus 84 lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~l 152 (355)
++.......+.+.|+|. |+ +.|++ .++.+++.|+|||||+.--|.. ..+.+-..+++
T Consensus 58 l~~~~~e~p~~vQl~g~--------~p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv 125 (333)
T PRK11815 58 LAFDPEEHPVALQLGGS--------DP---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCV 125 (333)
T ss_pred hccCCCCCcEEEEEeCC--------CH---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHH
Confidence 33344456789999994 33 44444 3456677899999999876632 13444556788
Q ss_pred HHHHccCCcEEEEEe
Q 041898 153 DEWRAESQLLLVMTS 167 (355)
Q Consensus 153 ~~lr~~~~~~ls~a~ 167 (355)
+++++.-+.-|++-+
T Consensus 126 ~avr~~v~~pVsvKi 140 (333)
T PRK11815 126 KAMKDAVSIPVTVKH 140 (333)
T ss_pred HHHHHHcCCceEEEE
Confidence 888773344555533
No 104
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=56.96 E-value=49 Score=30.77 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHH
Q 041898 83 TVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTL 151 (355)
Q Consensus 83 ~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~ 151 (355)
.+.......++.+-|+|. |+ + .....++.+..+++|||||+.-=|.. -.+.+....+
T Consensus 46 ~~~~~~~~~p~~~Ql~g~--------~~---~-~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~i 113 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGN--------DP---E-DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEI 113 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S---------H---H-HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHH
T ss_pred cccccccccceeEEEeec--------cH---H-HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHH
Confidence 344444456889999994 23 2 33334556777999999999986642 2567788899
Q ss_pred HHHHHccCCcEEEEEeccC
Q 041898 152 FDEWRAESQLLLVMTSHHL 170 (355)
Q Consensus 152 l~~lr~~~~~~ls~a~~~~ 170 (355)
++++++.-+.-+|+-+-.+
T Consensus 114 v~~~~~~~~~pvsvKiR~g 132 (309)
T PF01207_consen 114 VKAVRKAVPIPVSVKIRLG 132 (309)
T ss_dssp HHHHHHH-SSEEEEEEESE
T ss_pred HHhhhcccccceEEecccc
Confidence 9999983335566655543
No 105
>PRK10785 maltodextrin glucosidase; Provisional
Probab=56.04 E-value=1.3e+02 Score=30.93 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC----Cc--chh---------------------------------------h-h
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG----GA--IFS---------------------------------------S-M 106 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG----~~--~~~---------------------------------------~-~ 106 (355)
+.+.++++++++|++ |+|||+-+=- .. .|. + -
T Consensus 224 t~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN 301 (598)
T PRK10785 224 GDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLD 301 (598)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcccc
Confidence 567799999989888 8999976511 00 000 0 0
Q ss_pred hcCcHHHHHHHH---H-HHHHHHc-CCCCEEEEEcc
Q 041898 107 INQSSNRKSFIK---S-SVEMARF-NGFHGLDLHGV 137 (355)
Q Consensus 107 ~~~~~~r~~fi~---~-i~~~l~~-~~~DGIdiDwE 137 (355)
..|++-|+.+++ + +..|+++ +|+||.-||--
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva 337 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVV 337 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecH
Confidence 235677888886 3 4557886 89999999954
No 106
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=55.60 E-value=57 Score=30.41 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=29.0
Q ss_pred hcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC
Q 041898 107 INQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140 (355)
Q Consensus 107 ~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~ 140 (355)
..||+.|+-+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 3578899999898888888999999999986554
No 107
>PLN03244 alpha-amylase; Provisional
Probab=55.56 E-value=1.2e+02 Score=32.16 Aligned_cols=61 Identities=11% Similarity=0.110 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC----------------Cc--chh-----------h---hhcCcHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG----------------GA--IFS-----------S---MINQSSNRKSFIKSS 120 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG----------------~~--~~~-----------~---~~~~~~~r~~fi~~i 120 (355)
....++.+|+.+|++ |++|+|-+-- .. -|. . -..+++-|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 466789999989887 8999987521 00 011 0 112356778889999
Q ss_pred HHHHHcCCCCEEEEE
Q 041898 121 VEMARFNGFHGLDLH 135 (355)
Q Consensus 121 ~~~l~~~~~DGIdiD 135 (355)
.-|+++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 108
>PRK14866 hypothetical protein; Provisional
Probab=55.18 E-value=23 Score=34.73 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=41.8
Q ss_pred CCcEEEEEEcCCc---chhh-----------hhcCcHHHHHH-HH-HHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHH
Q 041898 89 PSVVTLLSIWGGA---IFSS-----------MINQSSNRKSF-IK-SSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLF 152 (355)
Q Consensus 89 ~~~kvllsiGG~~---~~~~-----------~~~~~~~r~~f-i~-~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l 152 (355)
.+.++++.|||.- .|.. ++.+-.. ..+ -. .+.+.+++.+.|.+-|||....+ .+++....++
T Consensus 183 ~~~~~~iG~GGgHYapr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~~l 260 (451)
T PRK14866 183 HTDRPLVGFGGGHYAPRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEALL 260 (451)
T ss_pred cCCCEEEEeCCCCcchhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHHHH
Confidence 4679999999964 2222 2222110 000 01 34455556789999999986555 7888888888
Q ss_pred HHHH
Q 041898 153 DEWR 156 (355)
Q Consensus 153 ~~lr 156 (355)
+++.
T Consensus 261 ~~lg 264 (451)
T PRK14866 261 EELG 264 (451)
T ss_pred HHCC
Confidence 8874
No 109
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=53.62 E-value=49 Score=31.23 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccC---------CCC----------CccHHHH-HHHHHHHHc--cCCcEEEEEeccC
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVL---------PDK----------GTNITKL-GTLFDEWRA--ESQLLLVMTSHHL 170 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~---------~~~----------~~~~~~~-~~~l~~lr~--~~~~~ls~a~~~~ 170 (355)
+.|++.. +.+++-|||||+|+.-+ |.. .+.+..| .+.++++|+ +.+ .|++.+.+.
T Consensus 152 ~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~v~vRis~~ 228 (338)
T cd02933 152 ADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-RVGIRLSPF 228 (338)
T ss_pred HHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-ceEEEECcc
Confidence 3455444 44555699999999765 311 1223333 467777887 555 478777654
No 110
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=51.58 E-value=76 Score=30.55 Aligned_cols=82 Identities=9% Similarity=-0.072 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCc----chhhh-------hcCcHHHHHH---HHHHHHHHHcCCCCEEEEEccC
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGA----IFSSM-------INQSSNRKSF---IKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~----~~~~~-------~~~~~~r~~f---i~~i~~~l~~~~~DGIdiDwE~ 138 (355)
..+.++++.+++|++ |+|+-+-...+. .+... ...+...+-+ ..++.++|.+|+-|.+=+|+.+
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 456788999888888 899887766543 12110 0011122222 6899999999999999999887
Q ss_pred CCCCccHHHHHHHHHHHHc
Q 041898 139 PDKGTNITKLGTLFDEWRA 157 (355)
Q Consensus 139 ~~~~~~~~~~~~~l~~lr~ 157 (355)
+.... ......|++-+|+
T Consensus 204 ~~~~~-~~~~~~l~~~~~~ 221 (384)
T smart00812 204 EAPDD-YWRSKEFLAWLYN 221 (384)
T ss_pred CCccc-hhcHHHHHHHHHH
Confidence 65422 2234455555555
No 111
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=49.84 E-value=62 Score=28.70 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=48.7
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhh
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
.+-|+.+| +++++.+ .+.|.|=|-+..|-.. .....+++.+|+ .+....+++-+.+.. + .+..
T Consensus 64 vHLMv~~P---~~~i~~~----~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~-~G~kaGlalnP~T~~-~---~l~~ 126 (229)
T PRK09722 64 VHLMVTDP---QDYIDQL----ADAGADFITLHPETIN-----GQAFRLIDEIRR-AGMKVGLVLNPETPV-E---SIKY 126 (229)
T ss_pred EEEEecCH---HHHHHHH----HHcCCCEEEECccCCc-----chHHHHHHHHHH-cCCCEEEEeCCCCCH-H---HHHH
Confidence 45566666 4455443 3449999999999321 134556677775 234556666654321 2 4567
Q ss_pred hhccCcEEEEeecc
Q 041898 183 MQRNLDWIHVLNFD 196 (355)
Q Consensus 183 l~~~vD~v~vm~YD 196 (355)
+.+.+|+|.+|+-+
T Consensus 127 ~l~~vD~VLvMsV~ 140 (229)
T PRK09722 127 YIHLLDKITVMTVD 140 (229)
T ss_pred HHHhcCEEEEEEEc
Confidence 77889999999986
No 112
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=49.66 E-value=2.2e+02 Score=26.57 Aligned_cols=68 Identities=9% Similarity=0.075 Sum_probs=42.1
Q ss_pred CcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-CCc-----cHHHHHHHHHHHHccCCcEE
Q 041898 90 SVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-KGT-----NITKLGTLFDEWRAESQLLL 163 (355)
Q Consensus 90 ~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-~~~-----~~~~~~~~l~~lr~~~~~~l 163 (355)
+..+++||.|.+ .+.|. .+++.+++.++|+|+|+.-.+. .+. ..+.+.++++++++..+.-|
T Consensus 99 ~~pvi~si~g~~-----------~~~~~-~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv 166 (325)
T cd04739 99 SIPVIASLNGVS-----------AGGWV-DYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPV 166 (325)
T ss_pred CCeEEEEeCCCC-----------HHHHH-HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCE
Confidence 678999998742 13333 4445566778999999997532 211 11345678888887333455
Q ss_pred EEEecc
Q 041898 164 VMTSHH 169 (355)
Q Consensus 164 s~a~~~ 169 (355)
.+-+++
T Consensus 167 ~vKl~p 172 (325)
T cd04739 167 AVKLSP 172 (325)
T ss_pred EEEcCC
Confidence 555554
No 113
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=48.55 E-value=43 Score=35.25 Aligned_cols=61 Identities=8% Similarity=0.068 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcC-------------Cc-----chh-----------h-h--hcCcHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWG-------------GA-----IFS-----------S-M--INQSSNRKSFIKSS 120 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG-------------~~-----~~~-----------~-~--~~~~~~r~~fi~~i 120 (355)
+...++.+++.+|++ |++|++-+-- +. .|. . . ..+++-|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 456789999999887 8999976511 00 000 0 0 12456778889999
Q ss_pred HHHHHcCCCCEEEEE
Q 041898 121 VEMARFNGFHGLDLH 135 (355)
Q Consensus 121 ~~~l~~~~~DGIdiD 135 (355)
.-|+++|++||+-||
T Consensus 376 ~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 376 RWWLEEYKFDGFRFD 390 (758)
T ss_pred HHHHHHhCccccccc
Confidence 999999999999998
No 114
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=47.74 E-value=49 Score=26.73 Aligned_cols=61 Identities=8% Similarity=0.033 Sum_probs=45.0
Q ss_pred cCcHHHHHHHHHHHHHHHcCCCCEEEEE-ccCCCCCccHHHHHHHHHHHHc---cCCcEEEEEec
Q 041898 108 NQSSNRKSFIKSSVEMARFNGFHGLDLH-GVLPDKGTNITKLGTLFDEWRA---ESQLLLVMTSH 168 (355)
Q Consensus 108 ~~~~~r~~fi~~i~~~l~~~~~DGIdiD-wE~~~~~~~~~~~~~~l~~lr~---~~~~~ls~a~~ 168 (355)
-+|++-....+.+++++++.+-.-|-|| .||..-..+-+...+|+..||+ ..+-.|-+.+.
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~~~~~lIl~~~ 119 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALLNNGTLILVVD 119 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeeccCCEEEEEEC
Confidence 3577788899999999999666678888 6876555677888999999998 33334444443
No 115
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=47.67 E-value=2.1e+02 Score=25.74 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEE--EEEcCCc-chhhhhcCcHHHHHHHHHHHHHHH--------cCCCCEEEEEccCCCC
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTL--LSIWGGA-IFSSMINQSSNRKSFIKSSVEMAR--------FNGFHGLDLHGVLPDK 141 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvl--lsiGG~~-~~~~~~~~~~~r~~fi~~i~~~l~--------~~~~DGIdiDwE~~~~ 141 (355)
....+...+++|+ +.+++|++ +..+-.. ..+. ..+.|-++.. .+++|||-|| |-|.+
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg~R~~~~----------V~~dI~~Y~~W~~~~~~~~~~vdGIFfD-E~p~~ 118 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSYGSRPLSE----------VKADIDTYASWYGQSEDYGYRVDGIFFD-EAPND 118 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEccccCCCHHH----------HHHHHHHHhhccccccCCCcccceEEEe-cCCCc
Confidence 3456666666774 45689998 2222221 2332 2333333333 2789999999 55554
Q ss_pred CccHHHHHHHHHHHHc
Q 041898 142 GTNITKLGTLFDEWRA 157 (355)
Q Consensus 142 ~~~~~~~~~~l~~lr~ 157 (355)
.+....|..+-+.+|.
T Consensus 119 ~~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 119 YANLPYYQNLYNYVKS 134 (253)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333444455555554
No 116
>PRK14705 glycogen branching enzyme; Provisional
Probab=47.55 E-value=53 Score=36.58 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=46.0
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEc-------CCc--c-------------------hhh---hhcCcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIW-------GGA--I-------------------FSS---MINQSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG-------G~~--~-------------------~~~---~~~~~~~r~~fi~~i~ 121 (355)
+...++.+++.+|++ |++||+-+= +|. . |.. -..+++-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 467799999999888 899997641 111 0 000 1235677888999999
Q ss_pred HHHHcCCCCEEEEEc
Q 041898 122 EMARFNGFHGLDLHG 136 (355)
Q Consensus 122 ~~l~~~~~DGIdiDw 136 (355)
-|+++|++||+-+|-
T Consensus 891 ~Wl~eyhiDGfR~Da 905 (1224)
T PRK14705 891 YWLDEFHIDGLRVDA 905 (1224)
T ss_pred HHHHHhCCCcEEEee
Confidence 999999999999985
No 117
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=47.37 E-value=70 Score=29.20 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCc--chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGA--IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGT 150 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~--~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~ 150 (355)
....++++++-+|++ +|+|+|-.--.. +... -++. .+.+.+.+++.|..||-+||-.. +.+..+.
T Consensus 71 ~~~dl~elv~Ya~~K--gVgi~lw~~~~~~~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~~----d~Q~~v~ 137 (273)
T PF10566_consen 71 PDFDLPELVDYAKEK--GVGIWLWYHSETGGNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMDR----DDQEMVN 137 (273)
T ss_dssp TT--HHHHHHHHHHT--T-EEEEEEECCHTTBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--SS----TSHHHHH
T ss_pred CccCHHHHHHHHHHc--CCCEEEEEeCCcchhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCCC----CCHHHHH
Confidence 345688899888888 688887663221 1221 1222 37888999999999999999843 3344555
Q ss_pred HHHHHHc-cCCcEEEEEec
Q 041898 151 LFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 151 ~l~~lr~-~~~~~ls~a~~ 168 (355)
+.+++-+ ...+.|-|..+
T Consensus 138 ~y~~i~~~AA~~~LmvnfH 156 (273)
T PF10566_consen 138 WYEDILEDAAEYKLMVNFH 156 (273)
T ss_dssp HHHHHHHHHHHTT-EEEET
T ss_pred HHHHHHHHHHHcCcEEEec
Confidence 5555444 33344445554
No 118
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=44.86 E-value=2.2e+02 Score=25.17 Aligned_cols=97 Identities=10% Similarity=0.105 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHH
Q 041898 78 VIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNIT 146 (355)
Q Consensus 78 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~ 146 (355)
.+.+..++.. +..+.++|.|.+ + +.++ .+++.+.++ .|+|||+..-|.. -.+.+
T Consensus 62 ~~~~~~~~~~--~~p~~vqi~g~~--------~---~~~~-~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~ 126 (233)
T cd02911 62 EGEIKALKDS--NVLVGVNVRSSS--------L---EPLL-NAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPE 126 (233)
T ss_pred HHHHHHhhcc--CCeEEEEecCCC--------H---HHHH-HHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHH
Confidence 3334445544 578999998842 2 2233 344555665 5999999986642 13466
Q ss_pred HHHHHHHHHHccCCcEEEEEeccCCcccccCCChhh-hh-ccCcEEEE
Q 041898 147 KLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDS-MQ-RNLDWIHV 192 (355)
Q Consensus 147 ~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~-l~-~~vD~v~v 192 (355)
...++++++|+ .+..+++-+..+.. ....++.. +. .-+|.+++
T Consensus 127 ~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv 171 (233)
T cd02911 127 RLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHV 171 (233)
T ss_pred HHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEE
Confidence 77888888886 46677777775432 11112222 21 24788777
No 119
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.81 E-value=1e+02 Score=28.74 Aligned_cols=63 Identities=13% Similarity=-0.024 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCC----c----------ch--------------------hhhhcCcHHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGG----A----------IF--------------------SSMINQSSNRKSFIKSS 120 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~----~----------~~--------------------~~~~~~~~~r~~fi~~i 120 (355)
+..+++++.||++ ++|+++.|--. . .| -.=+.|++.|+=|.+.+
T Consensus 73 Pdp~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 150 (317)
T cd06599 73 PDPAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGV 150 (317)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHH
Confidence 3466788889987 79999866211 0 00 01124778888888888
Q ss_pred HHHHHcCCCCEEEEEccCC
Q 041898 121 VEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~ 139 (355)
.+.+.+.|+||+=+|...+
T Consensus 151 ~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 151 KEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHhcCCCcEEEecCCCC
Confidence 7888888999999997544
No 120
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=44.57 E-value=1.1e+02 Score=28.00 Aligned_cols=71 Identities=7% Similarity=-0.060 Sum_probs=47.9
Q ss_pred EEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCC------c-chhh-----------------hhcCcHHHHHHHHHHHH
Q 041898 67 IFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGG------A-IFSS-----------------MINQSSNRKSFIKSSVE 122 (355)
Q Consensus 67 ~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~------~-~~~~-----------------~~~~~~~r~~fi~~i~~ 122 (355)
+++....-+..+++++.||++ |+|+++.+--. . .+.. -..+|+.++-|-+.+.+
T Consensus 66 ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 66 YSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred eEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHH
Confidence 344333334457788889887 79999877211 0 1111 23467788888899999
Q ss_pred HHHcCCCCEEEEEccCC
Q 041898 123 MARFNGFHGLDLHGVLP 139 (355)
Q Consensus 123 ~l~~~~~DGIdiDwE~~ 139 (355)
.+.+.|+||+=+|+-.+
T Consensus 144 ~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 144 PLEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHHhcCCcEEEecCCCC
Confidence 99999999999998544
No 121
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=44.35 E-value=68 Score=28.89 Aligned_cols=52 Identities=10% Similarity=0.175 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCc------chhhhhcCcHHHHHHHHHHHHHHHc
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGA------IFSSMINQSSNRKSFIKSSVEMARF 126 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~------~~~~~~~~~~~r~~fi~~i~~~l~~ 126 (355)
..+..+++.+|+.||++||+++|.--. .-.-+..|.-+...+...+-++++.
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~~ 209 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVRA 209 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHhc
Confidence 335667778999999999999996633 1133444554555555555555554
No 122
>PLN02334 ribulose-phosphate 3-epimerase
Probab=44.23 E-value=1.2e+02 Score=26.73 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=41.8
Q ss_pred HHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhcc--CcEEEEeecc
Q 041898 121 VEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRN--LDWIHVLNFD 196 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~~--vD~v~vm~YD 196 (355)
++.+.+.|.|||-+..|. .. .......+++++ +.+..+.+++.+... .+ ....+.+. +|||.+|+..
T Consensus 81 ~~~~~~~gad~v~vH~~q-~~---~d~~~~~~~~i~-~~g~~iGls~~~~t~-~~---~~~~~~~~~~~Dyi~~~~v~ 149 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQ-AS---TIHLHRLIQQIK-SAGMKAGVVLNPGTP-VE---AVEPVVEKGLVDMVLVMSVE 149 (229)
T ss_pred HHHHHHcCCCEEEEeecc-cc---chhHHHHHHHHH-HCCCeEEEEECCCCC-HH---HHHHHHhccCCCEEEEEEEe
Confidence 445566799999888884 11 123456666666 445567777653211 11 23455667 9999999874
No 123
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=42.83 E-value=83 Score=32.33 Aligned_cols=62 Identities=11% Similarity=0.166 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE-------cCCc---------------------chhhhhc---CcHHHHHHHHHHH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSI-------WGGA---------------------IFSSMIN---QSSNRKSFIKSSV 121 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi-------GG~~---------------------~~~~~~~---~~~~r~~fi~~i~ 121 (355)
..+.++.+|+.+++. ++-|+|=+ -|.. .|...+. .++-|.=|+.++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 577899999999988 79888755 0100 1222222 3456777899999
Q ss_pred HHHHcCCCCEEEEEc
Q 041898 122 EMARFNGFHGLDLHG 136 (355)
Q Consensus 122 ~~l~~~~~DGIdiDw 136 (355)
-+|++|.+||+-+|-
T Consensus 290 ~Wl~~yHiDGlRvDA 304 (628)
T COG0296 290 YWLEEYHIDGLRVDA 304 (628)
T ss_pred HHHHHhCCcceeeeh
Confidence 999999999998883
No 124
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=41.84 E-value=89 Score=27.49 Aligned_cols=76 Identities=9% Similarity=0.086 Sum_probs=49.6
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhh
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
.+-|+.+| +++++. +.+.|.|=|-+..|-. ....++++.+|+ .+....+++.+.+. .+ .+..
T Consensus 63 vHLMv~~p---~~~i~~----~~~~gad~i~~H~Ea~------~~~~~~l~~ik~-~g~k~GlalnP~Tp-~~---~i~~ 124 (220)
T PRK08883 63 VHLMVKPV---DRIIPD----FAKAGASMITFHVEAS------EHVDRTLQLIKE-HGCQAGVVLNPATP-LH---HLEY 124 (220)
T ss_pred EEeccCCH---HHHHHH----HHHhCCCEEEEcccCc------ccHHHHHHHHHH-cCCcEEEEeCCCCC-HH---HHHH
Confidence 45566666 445543 4446999999999932 235667777775 34455666665432 12 4567
Q ss_pred hhccCcEEEEeecc
Q 041898 183 MQRNLDWIHVLNFD 196 (355)
Q Consensus 183 l~~~vD~v~vm~YD 196 (355)
+.+.+|.|.+|+=+
T Consensus 125 ~l~~~D~vlvMtV~ 138 (220)
T PRK08883 125 IMDKVDLILLMSVN 138 (220)
T ss_pred HHHhCCeEEEEEec
Confidence 78899999999976
No 125
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=41.79 E-value=1.2e+02 Score=26.86 Aligned_cols=76 Identities=11% Similarity=0.103 Sum_probs=48.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhh
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDS 182 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~ 182 (355)
.+-|+.+| +++++. +.+.|.|=|-+..|-. ....++++.+|+ .+....+++-+.+. .+ .+..
T Consensus 67 vHLMv~~P---~~~i~~----~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~-~g~k~GlalnP~T~-~~---~i~~ 128 (223)
T PRK08745 67 VHLMVEPV---DRIVPD----FADAGATTISFHPEAS------RHVHRTIQLIKS-HGCQAGLVLNPATP-VD---ILDW 128 (223)
T ss_pred EEeccCCH---HHHHHH----HHHhCCCEEEEcccCc------ccHHHHHHHHHH-CCCceeEEeCCCCC-HH---HHHH
Confidence 45566665 445443 4446999999999942 235567777775 24455666655432 22 3566
Q ss_pred hhccCcEEEEeecc
Q 041898 183 MQRNLDWIHVLNFD 196 (355)
Q Consensus 183 l~~~vD~v~vm~YD 196 (355)
+.+.+|+|.+||-+
T Consensus 129 ~l~~vD~VlvMtV~ 142 (223)
T PRK08745 129 VLPELDLVLVMSVN 142 (223)
T ss_pred HHhhcCEEEEEEEC
Confidence 77899999999976
No 126
>PRK14057 epimerase; Provisional
Probab=41.25 E-value=1.5e+02 Score=26.75 Aligned_cols=77 Identities=10% Similarity=0.089 Sum_probs=50.4
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cC-------CcEEEEEeccCCccc
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ES-------QLLLVMTSHHLPALE 174 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~-------~~~ls~a~~~~~~~~ 174 (355)
.+-|+.+| +++++..+ +.|.|=|-+..|-. .+....++.+|+ +. +....+++-|.+. .
T Consensus 80 vHLMV~~P---~~~i~~~~----~aGad~It~H~Ea~------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp-~ 145 (254)
T PRK14057 80 VHLMVADQ---WTAAQACV----KAGAHCITLQAEGD------IHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATP-L 145 (254)
T ss_pred EEeeeCCH---HHHHHHHH----HhCCCEEEEeeccc------cCHHHHHHHHHHcCCCcccccccceeEEEECCCCC-H
Confidence 35555555 45555444 45999999999932 234566677776 32 3567778776532 2
Q ss_pred ccCCChhhhhccCcEEEEeecc
Q 041898 175 SVSYPLDSMQRNLDWIHVLNFD 196 (355)
Q Consensus 175 ~~~yd~~~l~~~vD~v~vm~YD 196 (355)
+ .+..+.+.+|+|.+|+-+
T Consensus 146 e---~i~~~l~~vD~VLvMtV~ 164 (254)
T PRK14057 146 D---VIIPILSDVEVIQLLAVN 164 (254)
T ss_pred H---HHHHHHHhCCEEEEEEEC
Confidence 2 356677889999999976
No 127
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=40.58 E-value=1.6e+02 Score=27.52 Aligned_cols=72 Identities=7% Similarity=0.150 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC-CCEEEEEccCCCCCccHHHHHHHHHHHH
Q 041898 78 VIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG-FHGLDLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 78 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGIdiDwE~~~~~~~~~~~~~~l~~lr 156 (355)
...-+.+|+..|++|+++-= +..... .+|+.+.+-+..+.++.- +|||-+--=.... .....+...|+++.
T Consensus 159 ~~aF~~A~~~~P~a~L~~ND-----y~~~~~--~k~~~~~~lv~~l~~~gvpIdgIG~Q~H~~~~-~~~~~i~~~l~~~~ 230 (320)
T PF00331_consen 159 ADAFRAAREADPNAKLFYND-----YNIESP--AKRDAYLNLVKDLKARGVPIDGIGLQSHFDAG-YPPEQIWNALDRFA 230 (320)
T ss_dssp HHHHHHHHHHHTTSEEEEEE-----SSTTST--HHHHHHHHHHHHHHHTTHCS-EEEEEEEEETT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEecc-----ccccch--HHHHHHHHHHHHHHhCCCccceechhhccCCC-CCHHHHHHHHHHHH
Confidence 33345789999999999842 222221 567777766666655543 7998775433322 22677888888887
Q ss_pred c
Q 041898 157 A 157 (355)
Q Consensus 157 ~ 157 (355)
+
T Consensus 231 ~ 231 (320)
T PF00331_consen 231 S 231 (320)
T ss_dssp T
T ss_pred H
Confidence 6
No 128
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=40.11 E-value=93 Score=26.61 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeecc
Q 041898 121 VEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFD 196 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD 196 (355)
++.+.+.|.|||-+.-+.+ .....+++.++. +....+.+. +... .+ .+.++...+|++.+|+.+
T Consensus 72 ~~~~~~~gadgv~vh~~~~------~~~~~~~~~~~~~g~~~~~~~~--~~t~-~e---~~~~~~~~~d~i~~~~~~ 136 (210)
T TIGR01163 72 IEDFAEAGADIITVHPEAS------EHIHRLLQLIKDLGAKAGIVLN--PATP-LE---FLEYVLPDVDLVLLMSVN 136 (210)
T ss_pred HHHHHHcCCCEEEEccCCc------hhHHHHHHHHHHcCCcEEEEEC--CCCC-HH---HHHHHHhhCCEEEEEEEc
Confidence 6666788999999875521 234566677776 545555443 2111 11 346666678999999875
No 129
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=39.80 E-value=1.6e+02 Score=33.17 Aligned_cols=62 Identities=11% Similarity=0.109 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEc-------CC----------c--c--------------hh-----hhhcCcHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIW-------GG----------A--I--------------FS-----SMINQSSNRKS 115 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiG-------G~----------~--~--------------~~-----~~~~~~~~r~~ 115 (355)
...++.+++.+|++ |++|++-+= +. . . +. .-+.++.-|+-
T Consensus 246 ~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~ 323 (1221)
T PRK14510 246 EEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRL 323 (1221)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHH
Confidence 45688899989887 899997651 10 0 0 00 01224566777
Q ss_pred HHHHHHHHHHcCCCCEEEEEccC
Q 041898 116 FIKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 116 fi~~i~~~l~~~~~DGIdiDwE~ 138 (355)
.++++.-|++ +++||.-||--.
T Consensus 324 i~d~lr~Wv~-~gVDGfRfDla~ 345 (1221)
T PRK14510 324 PMDVLRSWAK-RGVDGFRLDLAD 345 (1221)
T ss_pred HHHHHHHHHH-hCCCEEEEechh
Confidence 7888888999 999999999653
No 130
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.56 E-value=1.2e+02 Score=28.12 Aligned_cols=61 Identities=10% Similarity=-0.100 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCC----c-------------------------------chhhhhcCcHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGG----A-------------------------------IFSSMINQSSNRKSFIKS 119 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~----~-------------------------------~~~~~~~~~~~r~~fi~~ 119 (355)
+..+++++.||++ ++|+++.+--. . .+-+ +.|++.|+=|.+.
T Consensus 70 Pdp~~mi~~L~~~--G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~ 146 (317)
T cd06598 70 PDPAGMIADLAKK--GVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLID-WFDPAAQAWFHDN 146 (317)
T ss_pred CCHHHHHHHHHHc--CCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccC-CCCHHHHHHHHHH
Confidence 3356778888887 78888877211 0 1111 2478888878776
Q ss_pred HHHHHHcCCCCEEEEEccCC
Q 041898 120 SVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 120 i~~~l~~~~~DGIdiDwE~~ 139 (355)
+.++ .+.|+||+=+|+-.|
T Consensus 147 ~~~~-~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 147 YKKL-IDQGVTGWWGDLGEP 165 (317)
T ss_pred HHHh-hhCCccEEEecCCCc
Confidence 6554 778999999998544
No 131
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=39.52 E-value=79 Score=30.33 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=45.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc---------ch-----hhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEE
Q 041898 70 NSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA---------IF-----SSMINQSSNRKSFIKSSVEMARFNGFHGLDLH 135 (355)
Q Consensus 70 ~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~---------~~-----~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiD 135 (355)
.+..+..-+.+++.+|++ ++..++++-... .. ..-+ .+..++.|++=+++.++.+.=.||.|+
T Consensus 99 DW~~D~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~ 175 (384)
T PF14587_consen 99 DWDADAGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFD 175 (384)
T ss_dssp -TTSSHHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EE
T ss_pred CCCCCHHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccc
Confidence 333334455577777776 788888774422 00 1112 245788888888888887766889998
Q ss_pred ccCCCC--------------CccHHHHHHHHHHHHc
Q 041898 136 GVLPDK--------------GTNITKLGTLFDEWRA 157 (355)
Q Consensus 136 wE~~~~--------------~~~~~~~~~~l~~lr~ 157 (355)
+-.|.. +-+.+....|+++|+.
T Consensus 176 ~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~ 211 (384)
T PF14587_consen 176 YISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDK 211 (384)
T ss_dssp EEE--S-TTS-GG--SS-B----HHHHHHHHHHHHH
T ss_pred eeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 754421 2344566788888887
No 132
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.43 E-value=1e+02 Score=25.59 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcCC-c-chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIWGG-A-IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGG~-~-~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
...+..+++.+++++|+.++++.---- . .......+....+.+.+.+.++.+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 356778888888888888887653110 0 000012223344556666777777777766665
No 133
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=39.43 E-value=54 Score=33.78 Aligned_cols=74 Identities=16% Similarity=-0.028 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCcEEEEEE---cCCc--chhhhhcCcHHHHHHHHHHHHHH-HcCCCCEEEEEccCCCCCccHHHHHHHH
Q 041898 79 IFTNTVKHRNPSVVTLLSI---WGGA--IFSSMINQSSNRKSFIKSSVEMA-RFNGFHGLDLHGVLPDKGTNITKLGTLF 152 (355)
Q Consensus 79 ~~~~~lk~~~~~~kvllsi---GG~~--~~~~~~~~~~~r~~fi~~i~~~l-~~~~~DGIdiDwE~~~~~~~~~~~~~~l 152 (355)
.+++.+|++||++|+..-= -||- .+.....++ +.-+.-++++| -.+.-.|+||||-.+-+ ++..=...+
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~~~~---~~~a~Y~~~wl~ga~~~~gl~idYvg~~N--Er~~~~~~i 190 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPYDNP---QLTAYYVVSWLLGAKKTHGLDIDYVGIWN--ERGFDVNYI 190 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TTSSH---HHHHHHHHHHHHHHHHHH-----EE-S-T--TS---HHHH
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccCCCCCcccch---hhhhHHHHHHHHHHHHHhCCCceEechhh--ccCCChhHH
Confidence 4667899999999998543 2232 111111121 12222345555 22233456777765422 222123455
Q ss_pred HHHHc
Q 041898 153 DEWRA 157 (355)
Q Consensus 153 ~~lr~ 157 (355)
|.||.
T Consensus 191 k~lr~ 195 (669)
T PF02057_consen 191 KWLRK 195 (669)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
No 134
>PLN03231 putative alpha-galactosidase; Provisional
Probab=38.63 E-value=1e+02 Score=29.37 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEe
Q 041898 112 NRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTS 167 (355)
Q Consensus 112 ~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~ 167 (355)
..+.+.++.++...+.|+|=|-+|+-+.......+.|..+=++|++ ++...+|+..
T Consensus 160 gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~ 216 (357)
T PLN03231 160 GGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSP 216 (357)
T ss_pred hHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecC
Confidence 4567899999999999999999998765443455678889999998 8888888863
No 135
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=37.89 E-value=1.5e+02 Score=27.06 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCCEEEEEccCC----------CCCccHHHHHHHHHHHHc----cCCcEEEEEeccCCcccccCCChh
Q 041898 116 FIKSSVEMARFNGFHGLDLHGVLP----------DKGTNITKLGTLFDEWRA----ESQLLLVMTSHHLPALESVSYPLD 181 (355)
Q Consensus 116 fi~~i~~~l~~~~~DGIdiDwE~~----------~~~~~~~~~~~~l~~lr~----~~~~~ls~a~~~~~~~~~~~yd~~ 181 (355)
.+.+-.+-|.+.|||||-||+--+ ...........|+.++++ ..+. +-|-+..+....+ ++..
T Consensus 127 ii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~-~~Vi~qng~~l~d--~~~a 203 (300)
T COG2342 127 IIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPL-FRVIPQNGAELFD--ADGA 203 (300)
T ss_pred HHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCc-EEEEecccHhhcC--cccc
Confidence 445556666777999999996321 123445667788888887 3333 5555554444433 2334
Q ss_pred hhhccCcE-EEEee
Q 041898 182 SMQRNLDW-IHVLN 194 (355)
Q Consensus 182 ~l~~~vD~-v~vm~ 194 (355)
.+...+++ +.+-+
T Consensus 204 ~l~~~~~~~~~vE~ 217 (300)
T COG2342 204 GLLPRLGFGVAVET 217 (300)
T ss_pred chhhccccceEEEE
Confidence 44433333 34433
No 136
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=37.00 E-value=36 Score=29.82 Aligned_cols=64 Identities=11% Similarity=0.051 Sum_probs=37.6
Q ss_pred EEEEEEcCCc---chhhh-----------hcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHH
Q 041898 92 VTLLSIWGGA---IFSSM-----------INQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 92 kvllsiGG~~---~~~~~-----------~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr 156 (355)
++++.+||.- .|..+ +.+-.-..-=-+-+.+.+++.+.+-+-|||....+ .+++....+++++.
T Consensus 131 ~~~ig~GG~HYapr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~g 208 (213)
T PF04414_consen 131 PVAIGFGGGHYAPRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEELG 208 (213)
T ss_dssp EEEEEE-S-TT-HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHHT
T ss_pred ceeEEecCcccchhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHcC
Confidence 9999999964 23322 22210011012345556667799999999996655 78888888888873
No 137
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=36.78 E-value=1.9e+02 Score=25.24 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=46.9
Q ss_pred cCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEE
Q 041898 87 RNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVM 165 (355)
Q Consensus 87 ~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~ 165 (355)
+.++.|+++|.= ..-..+...+ +.++++-+++.|.|-+-|-.. +.+.+|...+..+.+++++ .....+.+
T Consensus 110 ~~~~~~iI~S~H------~f~~tp~~~~--l~~~~~~~~~~gadivKia~~-~~~~~D~~~l~~~~~~~~~~~~~p~i~~ 180 (224)
T PF01487_consen 110 RKGGTKIILSYH------DFEKTPSWEE--LIELLEEMQELGADIVKIAVM-ANSPEDVLRLLRFTKEFREEPDIPVIAI 180 (224)
T ss_dssp HHTTSEEEEEEE------ESS---THHH--HHHHHHHHHHTT-SEEEEEEE--SSHHHHHHHHHHHHHHHHHTSSEEEEE
T ss_pred hhCCCeEEEEec------cCCCCCCHHH--HHHHHHHHHhcCCCeEEEEec-cCCHHHHHHHHHHHHHHhhccCCcEEEE
Confidence 344899999964 2223333333 677888888999999999888 4444566666667777665 45566777
Q ss_pred Eecc
Q 041898 166 TSHH 169 (355)
Q Consensus 166 a~~~ 169 (355)
.+..
T Consensus 181 ~MG~ 184 (224)
T PF01487_consen 181 SMGE 184 (224)
T ss_dssp EETG
T ss_pred EcCC
Confidence 6653
No 138
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=36.02 E-value=2.1e+02 Score=25.17 Aligned_cols=77 Identities=9% Similarity=0.165 Sum_probs=47.8
Q ss_pred chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChh
Q 041898 102 IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLD 181 (355)
Q Consensus 102 ~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~ 181 (355)
..+-|+.++ +++ ++...+.|.|-|-+..|- . . +.-++++.+|+ .+....+++-|.+.. + .+.
T Consensus 65 DvHLMV~~p---~~~----i~~fa~agad~It~H~E~--~-~---~~~r~i~~Ik~-~G~kaGv~lnP~Tp~-~---~i~ 126 (220)
T COG0036 65 DVHLMVENP---DRY----IEAFAKAGADIITFHAEA--T-E---HIHRTIQLIKE-LGVKAGLVLNPATPL-E---ALE 126 (220)
T ss_pred EEEEecCCH---HHH----HHHHHHhCCCEEEEEecc--C-c---CHHHHHHHHHH-cCCeEEEEECCCCCH-H---HHH
Confidence 346666666 333 334445699999999992 1 2 34456666664 245555665543321 1 356
Q ss_pred hhhccCcEEEEeecc
Q 041898 182 SMQRNLDWIHVLNFD 196 (355)
Q Consensus 182 ~l~~~vD~v~vm~YD 196 (355)
-+.+.+|+|.+||-+
T Consensus 127 ~~l~~vD~VllMsVn 141 (220)
T COG0036 127 PVLDDVDLVLLMSVN 141 (220)
T ss_pred HHHhhCCEEEEEeEC
Confidence 667889999999976
No 139
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=35.93 E-value=1.4e+02 Score=31.05 Aligned_cols=148 Identities=12% Similarity=0.112 Sum_probs=82.0
Q ss_pred CCccEEEE-EEEEEeCCCcE--EEeCCCC----hHHHHHHHHHHHhcCCCcEEEEEE--cCCc---ch---h--------
Q 041898 48 ALFSHLMC-AFAFINSSTYN--IFINSTS----EQFFVIFTNTVKHRNPSVVTLLSI--WGGA---IF---S-------- 104 (355)
Q Consensus 48 ~~~thvi~-~f~~~~~~~~~--~~~~~~~----~~~~~~~~~~lk~~~~~~kvllsi--GG~~---~~---~-------- 104 (355)
-.++||++ +|+..++||.. +.+++.. .+.+..+.=.++.+. ++||..-+ -++. .. .
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 56889988 77777777632 4555553 344555433466654 78887332 2221 00 0
Q ss_pred ---------hhh-cCcHHHHHHHHHHHHHHHcC-CCCEEEEEccCCCC-------------------------Cc-----
Q 041898 105 ---------SMI-NQSSNRKSFIKSSVEMARFN-GFHGLDLHGVLPDK-------------------------GT----- 143 (355)
Q Consensus 105 ---------~~~-~~~~~r~~fi~~i~~~l~~~-~~DGIdiDwE~~~~-------------------------~~----- 143 (355)
.+. -+++. .+.|++|-+=|.+| .||||=|+-+...+ ..
T Consensus 425 ~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 000 02222 35688888888887 89999886542110 00
Q ss_pred ------cHHHHHHHHHHHHc-----c-CCcEEEEEeccCCc------ccccCCChhhhhccCcEEEEeeccCc
Q 041898 144 ------NITKLGTLFDEWRA-----E-SQLLLVMTSHHLPA------LESVSYPLDSMQRNLDWIHVLNFDYY 198 (355)
Q Consensus 144 ------~~~~~~~~l~~lr~-----~-~~~~ls~a~~~~~~------~~~~~yd~~~l~~~vD~v~vm~YD~~ 198 (355)
....++.|-.+|.+ . +.+...-.+.+.+- .|- +-++..+.+..||+-+|+|-+.
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~p~~~tarniya~~~l~p~~~~w~-aQ~l~~~~~~yD~~a~mamp~m 575 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRGPQVKSARNIFAMPILEPESEAWF-AQNLDDFLANYDWVAPMAMPLM 575 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccceehhcccccccCChhHHHHH-HhHHHHHHhhcchhHHhhchhh
Confidence 11234566677666 2 23333333333211 111 1267888889999999999755
No 140
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=35.56 E-value=60 Score=25.05 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=34.0
Q ss_pred EcCCc-chhhhhcCcHHHHHHHHHHHHHHHcCCCC---EEEEEccCCC
Q 041898 97 IWGGA-IFSSMINQSSNRKSFIKSSVEMARFNGFH---GLDLHGVLPD 140 (355)
Q Consensus 97 iGG~~-~~~~~~~~~~~r~~fi~~i~~~l~~~~~D---GIdiDwE~~~ 140 (355)
+||.. .++.++. ..|+..++.+.+-.++.|.| ||+|||+..+
T Consensus 43 ~GGe~~~Y~~~l~--~aR~~Al~rm~~~A~~lGAnAVVgvr~d~~~ig 88 (108)
T COG0393 43 VGGEIKAYEKMLA--EAREEALERMVDEAEALGANAVVGVRFDYSTIG 88 (108)
T ss_pred hccchHHHHHHHH--HHHHHHHHHHHHHHHHhCCCeEEEEEechhHhC
Confidence 56665 7888774 67999999999999999988 6789998654
No 141
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=35.46 E-value=1.7e+02 Score=25.93 Aligned_cols=96 Identities=7% Similarity=-0.033 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCc----chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-CCccHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGA----IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-KGTNITKLG 149 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~----~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-~~~~~~~~~ 149 (355)
...+++++.+.+..-++--.+.-|--. ++..+..+...++.+.+-++++.+...-|=|-||==.+. ..++..+-.
T Consensus 66 ~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl 145 (235)
T COG2874 66 LTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVL 145 (235)
T ss_pred hhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHH
Confidence 334556655555433332112212211 334566678889999999999999999999999843222 123344556
Q ss_pred HHHHHHHc--cCCcEEEEEeccC
Q 041898 150 TLFDEWRA--ESQLLLVMTSHHL 170 (355)
Q Consensus 150 ~~l~~lr~--~~~~~ls~a~~~~ 170 (355)
+|+..+|. ..++.|-+++.+.
T Consensus 146 ~fm~~~r~l~d~gKvIilTvhp~ 168 (235)
T COG2874 146 NFMTFLRKLSDLGKVIILTVHPS 168 (235)
T ss_pred HHHHHHHHHHhCCCEEEEEeChh
Confidence 66666666 5677777777754
No 142
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=35.06 E-value=45 Score=31.51 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCC
Q 041898 299 DGVETIRSKVSFAKEKGLLGYHAFQLSND 327 (355)
Q Consensus 299 dd~~S~~~K~~~~~~~gl~Gv~iW~l~~D 327 (355)
.|+++++..+++|+++|+-|+.+|---.+
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~ 83 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFN 83 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecC
Confidence 48999999999999999999998866663
No 143
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=34.14 E-value=3.2e+02 Score=25.78 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE---------------cCCc--chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEE
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSI---------------WGGA--IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLH 135 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi---------------GG~~--~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiD 135 (355)
+.....++.+++|+. |+||||-+ -.|. .+..+. +....+..++++.|+..| +..|
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~---~~v~~yT~~vl~~l~~~G---~~pd 127 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA---KAVYDYTKDVLQALKAAG---VTPD 127 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH---HHHHHHHHHHHHHHHHTT-----ES
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH---HHHHHHHHHHHHHHHHCC---CCcc
Q ss_pred ccCCCC------------CccHHHHHHHH----HHHHc-cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeeccCc
Q 041898 136 GVLPDK------------GTNITKLGTLF----DEWRA-ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDYY 198 (355)
Q Consensus 136 wE~~~~------------~~~~~~~~~~l----~~lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~~ 198 (355)
|-..++ ..+..+|..|+ +.+|+ .++..+.+-+..........+-+..+.+.-.-+-++.--++
T Consensus 128 ~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyY 207 (332)
T PF07745_consen 128 MVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYY 207 (332)
T ss_dssp EEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-
T ss_pred EEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecC
Q ss_pred CCCCC
Q 041898 199 LPTRD 203 (355)
Q Consensus 199 ~~~~~ 203 (355)
.-|..
T Consensus 208 P~w~~ 212 (332)
T PF07745_consen 208 PFWHG 212 (332)
T ss_dssp STTST
T ss_pred CCCcc
No 144
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=33.95 E-value=71 Score=28.37 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCCEEEEEcc
Q 041898 117 IKSSVEMARFNGFHGLDLHGV 137 (355)
Q Consensus 117 i~~i~~~l~~~~~DGIdiDwE 137 (355)
+...++.+++.|||||+|.+.
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~ 36 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFP 36 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCC
Confidence 456777788889999998763
No 145
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=33.90 E-value=2.7e+02 Score=23.93 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=38.5
Q ss_pred HHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeeccC
Q 041898 123 MARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFDY 197 (355)
Q Consensus 123 ~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD~ 197 (355)
.+.+.|.|||-+.-+.. +.....++.++. .+..+.+.+.+... .+ ....+...+||+.+|+.+.
T Consensus 79 ~~~~~g~d~v~vh~~~~------~~~~~~~~~~~~-~~~~~g~~~~~~t~-~e---~~~~~~~~~d~i~~~~~~~ 142 (220)
T PRK05581 79 DFAKAGADIITFHVEAS------EHIHRLLQLIKS-AGIKAGLVLNPATP-LE---PLEDVLDLLDLVLLMSVNP 142 (220)
T ss_pred HHHHcCCCEEEEeeccc------hhHHHHHHHHHH-cCCEEEEEECCCCC-HH---HHHHHHhhCCEEEEEEECC
Confidence 33477999988887732 233455666664 34455555532211 11 2456667799999999753
No 146
>PRK07094 biotin synthase; Provisional
Probab=33.90 E-value=2e+02 Score=26.59 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=28.0
Q ss_pred HHHHHHHHcCCCCEEEEEccCCC--------CCccHHHHHHHHHHHHc
Q 041898 118 KSSVEMARFNGFHGLDLHGVLPD--------KGTNITKLGTLFDEWRA 157 (355)
Q Consensus 118 ~~i~~~l~~~~~DGIdiDwE~~~--------~~~~~~~~~~~l~~lr~ 157 (355)
...++.|++.|+|.+.+..|... .....+...+.++.+++
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~ 176 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFENRIACLKDLKE 176 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 45667888899999999998542 12345566667777776
No 147
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=33.85 E-value=3.2e+02 Score=23.83 Aligned_cols=64 Identities=6% Similarity=0.039 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC-CCEEEEEccCCC---------CCccHHHHHHHHHHHH
Q 041898 89 PSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG-FHGLDLHGVLPD---------KGTNITKLGTLFDEWR 156 (355)
Q Consensus 89 ~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~-~DGIdiDwE~~~---------~~~~~~~~~~~l~~lr 156 (355)
.++||+.+||.-- ..-- .-...+-..+++..+.++-+ .++|+|-+| |. +|++.+..-..||..-
T Consensus 118 eGl~ViaCIGE~l--eeRE-aG~t~dVv~~Ql~aiad~v~~w~niviAYE-PVWAIGTGk~atp~QaqEVh~~iR~wl 191 (247)
T KOG1643|consen 118 EGLKVIACIGETL--EERE-AGKTLDVVFRQLKAIADKVKDWSNIVIAYE-PVWAIGTGKTATPEQAQEVHAEIRKWL 191 (247)
T ss_pred cCCeEEEEecccH--Hhhh-cCchHHHHHHHHHHHHHhcCCccceEEEee-ceeeecCCCCCCHHHHHHHHHHHHHHH
Confidence 3899999999832 0000 00112234566666666654 899999999 42 3455555555555543
No 148
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=33.74 E-value=2.4e+02 Score=23.96 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=39.2
Q ss_pred HHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeecc
Q 041898 121 VEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFD 196 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD 196 (355)
++.+.+.|.|||-+..+.. +....+++.++. .+..+.+.+.+... .+ ...++...+||+.+++++
T Consensus 73 ~~~~~~~g~dgv~vh~~~~------~~~~~~~~~~~~-~~~~~g~~~~~~~~-~~---~~~~~~~~~d~i~~~~~~ 137 (211)
T cd00429 73 IEAFAKAGADIITFHAEAT------DHLHRTIQLIKE-LGMKAGVALNPGTP-VE---VLEPYLDEVDLVLVMSVN 137 (211)
T ss_pred HHHHHHcCCCEEEECccch------hhHHHHHHHHHH-CCCeEEEEecCCCC-HH---HHHHHHhhCCEEEEEEEC
Confidence 4455588999998876622 233455666664 34555555543211 11 245555668999999875
No 149
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=33.62 E-value=71 Score=31.66 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=50.6
Q ss_pred EEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc---chh--hhhcCcHHHHHHHHHHHHHHHcC
Q 041898 53 LMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA---IFS--SMINQSSNRKSFIKSSVEMARFN 127 (355)
Q Consensus 53 vi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~---~~~--~~~~~~~~r~~fi~~i~~~l~~~ 127 (355)
..++|..+-++|.. ....+.-..|.++++.|+++ |++.++++-=|. .+. --..|++..+.|++=....++++
T Consensus 72 fSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~--GI~P~VTL~H~dlP~~L~~~GGW~n~~~v~~F~~YA~~~f~~f 148 (467)
T TIGR01233 72 ISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKR--HVEPFVTLHHFDTPEALHSNGDFLNRENIEHFIDYAAFCFEEF 148 (467)
T ss_pred EecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHc--CCEEEEeccCCCCcHHHHHcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44566666665421 12222346688999999988 899999996555 111 11236677788888888888888
Q ss_pred CCCEEEE
Q 041898 128 GFHGLDL 134 (355)
Q Consensus 128 ~~DGIdi 134 (355)
| | |..
T Consensus 149 g-d-Vk~ 153 (467)
T TIGR01233 149 P-E-VNY 153 (467)
T ss_pred C-C-CCE
Confidence 8 7 763
No 150
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=33.45 E-value=1.4e+02 Score=24.37 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEE-EEcCCcchh-hhhcCcHHHHHHHHHHHHHHHcCCCCEEEEE
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLL-SIWGGAIFS-SMINQSSNRKSFIKSSVEMARFNGFHGLDLH 135 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvll-siGG~~~~~-~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiD 135 (355)
...+..+++.+++++|+.+|++ ++--...-. .........+++.+.+.++.+++++.=||+.
T Consensus 74 ~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 74 IKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 4567788888888888888764 332111000 0011234566777777777788876666665
No 151
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=33.28 E-value=91 Score=26.09 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=36.4
Q ss_pred cCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHH
Q 041898 108 NQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 108 ~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr 156 (355)
.+++..++.|.+-+..|-+-|.-|+.|-+|-| +-++.+..+++..|
T Consensus 145 k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp---elrerl~~l~~~~r 190 (191)
T COG3410 145 KNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP---ELRERLVELKRGKR 190 (191)
T ss_pred hCHHHHHHHHHHHHHHHHhcccceEEEEEeCH---HHHHHHHHHHhhhc
Confidence 35567788999999999999999999999954 55667777776654
No 152
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=33.26 E-value=1.3e+02 Score=28.35 Aligned_cols=67 Identities=16% Similarity=0.063 Sum_probs=46.3
Q ss_pred cCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEeccCCcccccCCChhhhhcc-CcEEEEeec
Q 041898 126 FNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTSHHLPALESVSYPLDSMQRN-LDWIHVLNF 195 (355)
Q Consensus 126 ~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~~~~~~~~~~~yd~~~l~~~-vD~v~vm~Y 195 (355)
++.=+|++......+.|.-...++.|+++|++ ..--.+|+...... ++. --+.+|.+. +|.||+--.
T Consensus 155 ~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~--L~~-~lv~eLeeAGLdRiNlSv~ 223 (414)
T COG2100 155 RFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVL--LSK-KLVDELEEAGLDRINLSVD 223 (414)
T ss_pred hhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCcee--ccH-HHHHHHHHhCCceEEeecc
Confidence 34568888888877777888889999999998 55555666554322 221 135677776 999998543
No 153
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=32.85 E-value=3.5e+02 Score=23.98 Aligned_cols=97 Identities=6% Similarity=-0.047 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHH
Q 041898 78 VIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNIT 146 (355)
Q Consensus 78 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~ 146 (355)
.+.+..++ .+.+++++|++.+ + +.++. +.+.+.+ ++|+|||+.--|.. -.+.+
T Consensus 58 ~~e~~~~~---~~~~vivnv~~~~--------~---ee~~~-~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~ 121 (231)
T TIGR00736 58 IEQIKKAE---SRALVSVNVRFVD--------L---EEAYD-VLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKE 121 (231)
T ss_pred HHHHHHHh---hcCCEEEEEecCC--------H---HHHHH-HHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHH
Confidence 33344554 2468999999943 2 22222 3334444 69999999887652 24677
Q ss_pred HHHHHHHHHHccCCcEEEEEeccCCcccccCCChh-hh-hccCcEEEE
Q 041898 147 KLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLD-SM-QRNLDWIHV 192 (355)
Q Consensus 147 ~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~-~l-~~~vD~v~v 192 (355)
...++++++++ .+.-+++-+.+...... ..++. .+ ..-+|.+.|
T Consensus 122 ~l~~iv~av~~-~~~PVsvKiR~~~~~~~-~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 122 LLKEFLTKMKE-LNKPIFVKIRGNCIPLD-ELIDALNLVDDGFDGIHV 167 (231)
T ss_pred HHHHHHHHHHc-CCCcEEEEeCCCCCcch-HHHHHHHHHHcCCCEEEE
Confidence 78888999885 35567777776421111 01111 12 346899988
No 154
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=32.01 E-value=52 Score=34.12 Aligned_cols=20 Identities=20% Similarity=0.514 Sum_probs=16.1
Q ss_pred ChhhhhccCcEEEEeeccCc
Q 041898 179 PLDSMQRNLDWIHVLNFDYY 198 (355)
Q Consensus 179 d~~~l~~~vD~v~vm~YD~~ 198 (355)
++..+.+.-||+-+|+.-|.
T Consensus 556 ~l~~~~~~yD~~a~mampym 575 (671)
T PRK14582 556 NLDDFLKSYDWTAPMAMPLM 575 (671)
T ss_pred HHHHHHhhcchhhhhcchhh
Confidence 67888888999999995544
No 155
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=31.85 E-value=1.5e+02 Score=26.53 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDE 154 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~ 154 (355)
..+++.++.+|++ ++ .++.||+ .|..++ .+..++.-++.+++.|||.|+|.=-... -..+....+++.
T Consensus 41 ~~l~eki~la~~~--~V--~v~~GGt-l~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--i~~~~~~rlI~~ 108 (237)
T TIGR03849 41 DIVKEKIEMYKDY--GI--KVYPGGT-LFEIAH-----SKGKFDEYLNECDELGFEAVEISDGSME--ISLEERCNLIER 108 (237)
T ss_pred HHHHHHHHHHHHc--CC--eEeCCcc-HHHHHH-----HhhhHHHHHHHHHHcCCCEEEEcCCccC--CCHHHHHHHHHH
Confidence 4567777666666 45 5567775 344433 2356777788999999999998743221 123344556666
Q ss_pred HHc
Q 041898 155 WRA 157 (355)
Q Consensus 155 lr~ 157 (355)
.++
T Consensus 109 ~~~ 111 (237)
T TIGR03849 109 AKD 111 (237)
T ss_pred HHh
Confidence 654
No 156
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=31.49 E-value=2e+02 Score=25.06 Aligned_cols=72 Identities=15% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHHcCCCCEEEEEccCCCCCcc----HHHHHHHHHHHHc--cCCcEEEEEeccCCcccccCCChhhhhccCcEEEE
Q 041898 120 SVEMARFNGFHGLDLHGVLPDKGTN----ITKLGTLFDEWRA--ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHV 192 (355)
Q Consensus 120 i~~~l~~~~~DGIdiDwE~~~~~~~----~~~~~~~l~~lr~--~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~v 192 (355)
+++.+...|+|-|-||+|....+.+ +.+...+++.++. ..+..+-+.++......- .-|+..+..-+|.|.+
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~-~~Dl~~l~~g~~gI~l 90 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHI-ERDLEALDAGADGIVL 90 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHH-HHHHHHHHTTSSEEEE
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchh-hhhhhhcccCCCeeec
Confidence 4455667899999999998664333 3556677777766 345677788776322110 1133345556777766
No 157
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=30.65 E-value=3.7e+02 Score=23.53 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHH
Q 041898 77 FVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr 156 (355)
..++++.+++. +.|+++|. +..-.++.. +. ..++.+-++++|.|=+-|-.. +.+.+|...+..+.++++
T Consensus 107 ~~~l~~~~~~~--~~kvI~S~------H~f~~tp~~-~~-l~~~~~~~~~~gaDivKia~~-a~~~~D~~~ll~~~~~~~ 175 (228)
T TIGR01093 107 VKELINIAKKG--GTKIIMSY------HDFQKTPSW-EE-IVERLEKALSYGADIVKIAVM-ANSKEDVLTLLEITNKVD 175 (228)
T ss_pred HHHHHHHHHHC--CCEEEEec------cCCCCCCCH-HH-HHHHHHHHHHhCCCEEEEEec-cCCHHHHHHHHHHHHHHH
Confidence 34444333433 67888774 333233322 22 335666677778887777665 333344444444444443
No 158
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=30.49 E-value=52 Score=23.67 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=24.8
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCC
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFH 130 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~D 130 (355)
|.....+++.|++|.++=-.++++|++.
T Consensus 9 ~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 9 LEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 5567788999999999999999999875
No 159
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=30.26 E-value=1.2e+02 Score=31.89 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHhcCCCcEEE---EEEcC-Cc------ch-----------h--------h-----------hhcCcHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTL---LSIWG-GA------IF-----------S--------S-----------MINQSSNR 113 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvl---lsiGG-~~------~~-----------~--------~-----------~~~~~~~r 113 (355)
...++.+++.+|+++|++|-+ -++-| |+ .. + . -+-+|+.-
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 356888999999999998744 55544 44 00 0 0 02356677
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCC
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~ 139 (355)
.+|-+..-.+|.+-|+|||-+|-+..
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~ 392 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAI 392 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhh
Confidence 89999999999999999999997643
No 160
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=30.05 E-value=3.9e+02 Score=24.78 Aligned_cols=52 Identities=13% Similarity=0.296 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHc---cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEee
Q 041898 143 TNITKLGTLFDEWRA---ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLN 194 (355)
Q Consensus 143 ~~~~~~~~~l~~lr~---~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~ 194 (355)
..+..+..+++.|.. ..+.+=++.+-++|.+....|-+++.+.-+||+++.-
T Consensus 125 Ns~trl~~y~~~L~k~r~~gkkIgaIVMNANPFTLGH~YLVEqAaaqcDwlHLFv 179 (352)
T COG3053 125 NSATRLKDYLSSLKKLRHPGKKIGAIVMNANPFTLGHRYLVEQAAAQCDWLHLFV 179 (352)
T ss_pred cCchhHHHHHHHHHHhccCCCeeEEEEEeCCCccchhHHHHHHHHhhCCEEEEEE
Confidence 455667777776666 6667778888888888887899999999999998854
No 161
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=29.17 E-value=2.2e+02 Score=25.23 Aligned_cols=118 Identities=10% Similarity=0.031 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhc-----CCCcEEEEEEcCCcchhhhhc-CcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHH
Q 041898 75 QFFVIFTNTVKHR-----NPSVVTLLSIWGGAIFSSMIN-QSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKL 148 (355)
Q Consensus 75 ~~~~~~~~~lk~~-----~~~~kvllsiGG~~~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~ 148 (355)
..+.+.+++++.+ .++-+..+=|-=.+....++. |.+....++..+.+...-| +|-.|.|.+..+++.-
T Consensus 47 e~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~-----~L~iEgP~d~g~r~~Q 121 (248)
T PF07476_consen 47 EKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPF-----KLRIEGPMDAGSREAQ 121 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS------EEEE-SB--SSHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCC-----eeeeeCCcCCCChHHH
Confidence 3444444444443 233344433322223444444 5566667777777776664 5778999888888888
Q ss_pred HHHHHHHHc---cCCcEEEEEeccCCcccccCCChhhh--hccCcEEEEeeccCcCC
Q 041898 149 GTLFDEWRA---ESQLLLVMTSHHLPALESVSYPLDSM--QRNLDWIHVLNFDYYLP 200 (355)
Q Consensus 149 ~~~l~~lr~---~~~~~ls~a~~~~~~~~~~~yd~~~l--~~~vD~v~vm~YD~~~~ 200 (355)
+..+++||+ ..+..+-+..--.-++.+ |+..+ ++.+|.|.|.+=|+.|-
T Consensus 122 I~~l~~Lr~~L~~~g~~v~iVADEWCNT~e---DI~~F~da~A~dmVQIKtPDLGgi 175 (248)
T PF07476_consen 122 IEALAELREELDRRGINVEIVADEWCNTLE---DIREFADAKAADMVQIKTPDLGGI 175 (248)
T ss_dssp HHHHHHHHHHHHHCT--EEEEE-TT--SHH---HHHHHHHTT-SSEEEE-GGGGSST
T ss_pred HHHHHHHHHHHHhcCCCCeEEeehhcCCHH---HHHHHHhcCCcCEEEecCCCccch
Confidence 888888888 333333333221111222 55555 46899999999998753
No 162
>PRK09505 malS alpha-amylase; Reviewed
Probab=29.17 E-value=66 Score=33.56 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCEEEEEcc
Q 041898 109 QSSNRKSFIKSSVEMARFNGFHGLDLHGV 137 (355)
Q Consensus 109 ~~~~r~~fi~~i~~~l~~~~~DGIdiDwE 137 (355)
|++-|+.+++-+..|++++|+||+-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 44778889999999999999999999964
No 163
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=29.09 E-value=3.4e+02 Score=24.93 Aligned_cols=31 Identities=6% Similarity=-0.105 Sum_probs=20.8
Q ss_pred hcCcHHHHHHHHHHHHHHHcCCCCEEEEEccC
Q 041898 107 INQSSNRKSFIKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 107 ~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~ 138 (355)
+.+++.|+=+.+ .++-+.+.|+||+-+|+-.
T Consensus 129 ftnp~a~~w~~~-~~~~~~~~Gid~~~~D~~e 159 (308)
T cd06593 129 FTNPDACKWYKD-KLKPLLDMGVDCFKTDFGE 159 (308)
T ss_pred CCCHHHHHHHHH-HHHHHHHhCCcEEecCCCC
Confidence 346677765544 4445556899999998754
No 164
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=28.96 E-value=4e+02 Score=24.61 Aligned_cols=74 Identities=12% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEE-EccCCCCCccHHHHHHHHHHHH
Q 041898 78 VIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL-HGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 78 ~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi-DwE~~~~~~~~~~~~~~l~~lr 156 (355)
.++.+.++..+|++|.---| +...+.+|+..+-|++++-++++.|.+--|.- -+.... .+...-+..+++.++
T Consensus 174 ~eL~~~v~~~rp~lkTARNi-----ya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~~-~~~~~WL~~Lv~~v~ 247 (294)
T PF14883_consen 174 MELAAAVRRYRPDLKTARNI-----YAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQA-EDPEQWLAQLVDAVA 247 (294)
T ss_pred HHHHHHHHHhCccchhhhcc-----cccccCCcchhhHHHHhHHHHHHhCCeeheeccchhccc-cCHHHHHHHHHHHHH
Confidence 34455667777888765443 55667788888999999999999887655532 121111 133344567788877
Q ss_pred c
Q 041898 157 A 157 (355)
Q Consensus 157 ~ 157 (355)
+
T Consensus 248 ~ 248 (294)
T PF14883_consen 248 A 248 (294)
T ss_pred h
Confidence 7
No 165
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=28.53 E-value=4.3e+02 Score=23.63 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHH
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEW 155 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~l 155 (355)
.+.++++.+|+. +.|+++|. +..-.+|.. +. +.++++-+++.|.|=+-|-.. +.+..|...+..+.+++
T Consensus 123 ~~~~l~~~~~~~--~~kvI~S~------H~f~~tP~~-~~-l~~~~~~~~~~gaDivKia~~-a~~~~D~~~ll~~~~~~ 191 (253)
T PRK02412 123 VVKEMVAFAHEH--GVKVVLSY------HDFEKTPPK-EE-IVERLRKMESLGADIVKIAVM-PQSEQDVLTLLNATREM 191 (253)
T ss_pred HHHHHHHHHHHc--CCEEEEee------CCCCCCcCH-HH-HHHHHHHHHHhCCCEEEEEec-CCCHHHHHHHHHHHHHH
Confidence 344444434433 57777764 222222311 12 335666666777777777665 33323333333444443
No 166
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=28.42 E-value=47 Score=33.20 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=39.1
Q ss_pred HHHHHHHHhcCCCcEEEEEEc---CCc----ch---hhhh--cCcHHHHHHHHHHHHHHHcCCCCEEEEEc
Q 041898 78 VIFTNTVKHRNPSVVTLLSIW---GGA----IF---SSMI--NQSSNRKSFIKSSVEMARFNGFHGLDLHG 136 (355)
Q Consensus 78 ~~~~~~lk~~~~~~kvllsiG---G~~----~~---~~~~--~~~~~r~~fi~~i~~~l~~~~~DGIdiDw 136 (355)
..+++.+++.+|++|++.|-= +|. .+ ..+- ..++.++.+++=++++++.|.=-||+|+-
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~a 226 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWA 226 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESE
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 456778888899999998851 122 11 1111 13467899999999999999888999875
No 167
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=28.29 E-value=5.2e+02 Score=24.49 Aligned_cols=101 Identities=7% Similarity=0.010 Sum_probs=50.9
Q ss_pred HHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCC------CCCccHHHHHHHHHHH
Q 041898 82 NTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP------DKGTNITKLGTLFDEW 155 (355)
Q Consensus 82 ~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~------~~~~~~~~~~~~l~~l 155 (355)
+.+|+.+|+.-++.+||... .. -.+ .+.+.+.++.-+.|.++|+...+ ....+...+...++++
T Consensus 112 ~~vr~~~p~~p~~aNl~~~~-~~--~~~-------~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i 181 (352)
T PRK05437 112 SVVRKVAPDGLLFANLGAVQ-LY--GYG-------VEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEI 181 (352)
T ss_pred HHHHHHCCCceEEeecCccc-cC--CCC-------HHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHH
Confidence 45677777777777777742 00 001 12233334444679999987422 1222333445677777
Q ss_pred HccCCcEEEEEeccCCcccccCCChhhhhc-cCcEEEEeec
Q 041898 156 RAESQLLLVMTSHHLPALESVSYPLDSMQR-NLDWIHVLNF 195 (355)
Q Consensus 156 r~~~~~~ls~a~~~~~~~~~~~yd~~~l~~-~vD~v~vm~Y 195 (355)
++.-+.-+.+-....... ..+...+.+ -+|.|.|...
T Consensus 182 ~~~~~vPVivK~~g~g~s---~~~a~~l~~~Gvd~I~Vsg~ 219 (352)
T PRK05437 182 VSALPVPVIVKEVGFGIS---KETAKRLADAGVKAIDVAGA 219 (352)
T ss_pred HHhhCCCEEEEeCCCCCc---HHHHHHHHHcCCCEEEECCC
Confidence 762233344433321111 113333433 4899999553
No 168
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=28.03 E-value=1.4e+02 Score=31.23 Aligned_cols=64 Identities=11% Similarity=0.053 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCCcEEE---EEEcC-Cc----ch-----hh---------------------------hhcCcHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTL---LSIWG-GA----IF-----SS---------------------------MINQSSNRK 114 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvl---lsiGG-~~----~~-----~~---------------------------~~~~~~~r~ 114 (355)
..++.+++.+|++++++|=+ -+|-| |+ .. +. .+-+|+.-.
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 46788888999998877643 45533 44 11 00 124567778
Q ss_pred HHHHHHHHHHHcCCCCEEEEEccC
Q 041898 115 SFIKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 115 ~fi~~i~~~l~~~~~DGIdiDwE~ 138 (355)
+|-+..-.+|.+.|+|||-+|-..
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~ 408 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIH 408 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhh
Confidence 999999999999999999999654
No 169
>PLN02161 beta-amylase
Probab=27.64 E-value=1.5e+02 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEccCCC------CCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 113 RKSFIKSSVEMARFNGFHGLDLHGVLPD------KGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 113 r~~fi~~i~~~l~~~~~DGIdiDwE~~~------~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
.++|..+ .+.|+..|.|||.+|.-|-. ..-++..|.+|.+-+|+ +-+++..++.+
T Consensus 116 ~~al~~~-L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFH 177 (531)
T PLN02161 116 LKALTVS-LKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGLKLHVALCFH 177 (531)
T ss_pred HHHHHHH-HHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 3444444 45668899999999954321 12577889999988887 55566666655
No 170
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=26.86 E-value=1.9e+02 Score=26.06 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHHHcCCCCEEEEEccCCCC----CccHHHHHHHHHHHHccCCcEEEEEec
Q 041898 117 IKSSVEMARFNGFHGLDLHGVLPDK----GTNITKLGTLFDEWRAESQLLLVMTSH 168 (355)
Q Consensus 117 i~~i~~~l~~~~~DGIdiDwE~~~~----~~~~~~~~~~l~~lr~~~~~~ls~a~~ 168 (355)
....++.+++.|||||+|....+.. ..+......+.+.+++.....+++..+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 67 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAP 67 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3567888999999999997654321 112233333333333232556665544
No 171
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=26.85 E-value=2.5e+02 Score=22.77 Aligned_cols=59 Identities=10% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
..+..+++.+++.+|+.+|++.--- ...............+-+.+.++.+++++.=||+
T Consensus 72 ~~l~~li~~~~~~~~~~~vi~~~~~-p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 72 ANYRTILEKLRKHFPNIKIVVQSIL-PVGELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEecC-CcCccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4466666677777777777753100 0000111122344555566666666666655554
No 172
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.84 E-value=3.6e+02 Score=25.48 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=35.1
Q ss_pred EEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCC
Q 041898 53 LMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFH 130 (355)
Q Consensus 53 vi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~D 130 (355)
.++.|+++|+.|. ...+.++...++++ |.|||++=|. +-|...++++..|-++.|.+
T Consensus 140 ~Vil~vGVNG~GK--------TTTIaKLA~~l~~~--g~~VllaA~D-----------TFRAaAiEQL~~w~er~gv~ 196 (340)
T COG0552 140 FVILFVGVNGVGK--------TTTIAKLAKYLKQQ--GKSVLLAAGD-----------TFRAAAIEQLEVWGERLGVP 196 (340)
T ss_pred EEEEEEecCCCch--------HhHHHHHHHHHHHC--CCeEEEEecc-----------hHHHHHHHHHHHHHHHhCCe
Confidence 3455688888762 23466676677766 7899998766 34455555555555544443
No 173
>PLN00197 beta-amylase; Provisional
Probab=26.74 E-value=1.6e+02 Score=29.65 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCCC------CCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLPD------KGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~~------~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
+.+.++ .+.|+..|+|||.+|.-|-. ..-++..|.+|++-+|+ +-+++..++.+
T Consensus 127 ~~l~~~-L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~VmSFH 187 (573)
T PLN00197 127 KAMKAS-LQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQAVMSFH 187 (573)
T ss_pred HHHHHH-HHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 444444 45668899999999954321 12577889999988887 55555555555
No 174
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=26.57 E-value=61 Score=17.49 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=17.0
Q ss_pred EEEeCCHHHHHHHHHHHHHcCC
Q 041898 295 WVNFDGVETIRSKVSFAKEKGL 316 (355)
Q Consensus 295 ~v~ydd~~S~~~K~~~~~~~gl 316 (355)
.+.++ .++++.|++|+++.|+
T Consensus 10 il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 10 ILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred ccccc-HHHhhHHHHHHHHcCC
Confidence 45566 9999999999997775
No 175
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=26.50 E-value=1.5e+02 Score=29.44 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=29.6
Q ss_pred EEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCC
Q 041898 53 LMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGG 100 (355)
Q Consensus 53 vi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~ 100 (355)
+.++|..+-++|..-....+.-..+.++++.|+++ |+++++++-=|
T Consensus 88 fSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~--GI~P~vTL~H~ 133 (477)
T PRK15014 88 TSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKY--NIEPVITLSHF 133 (477)
T ss_pred ecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEeeCC
Confidence 45566667666421112222345688899999988 89999999333
No 176
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=26.47 E-value=4.5e+02 Score=24.72 Aligned_cols=88 Identities=7% Similarity=-0.006 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----CccHHHHHHH
Q 041898 77 FVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----GTNITKLGTL 151 (355)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----~~~~~~~~~~ 151 (355)
...+++.+++...++.+.+|||+.. ....+..-+.|++.+.++- . ..|.++|+.--|.. .++.+.+.++
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~----~~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~~~~~i 194 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNK----DTPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKAELRDL 194 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCC----CCCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHHHHHHH
Confidence 3444555555555788999998742 0111223455666555543 3 38999999876642 2456677788
Q ss_pred HHHHHc--c-----CCcEEEEEeccC
Q 041898 152 FDEWRA--E-----SQLLLVMTSHHL 170 (355)
Q Consensus 152 l~~lr~--~-----~~~~ls~a~~~~ 170 (355)
++.+++ . ...-|.+-+++.
T Consensus 195 ~~~V~~~~~~~~~~~~~Pv~vKLsP~ 220 (335)
T TIGR01036 195 LTAVKQEQDGLRRVHRVPVLVKIAPD 220 (335)
T ss_pred HHHHHHHHHhhhhccCCceEEEeCCC
Confidence 888877 2 124566666654
No 177
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=26.30 E-value=5.5e+02 Score=24.15 Aligned_cols=69 Identities=10% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCC--CEEEEEccCCCC-CccHHHHHHHHHHHHc
Q 041898 82 NTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGF--HGLDLHGVLPDK-GTNITKLGTLFDEWRA 157 (355)
Q Consensus 82 ~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~--DGIdiDwE~~~~-~~~~~~~~~~l~~lr~ 157 (355)
+.+|+..|+.|+++- .++ ........+++-++++-|++.|. |||-+---.... +........|.+.++.
T Consensus 178 ~~AreadP~AkL~~N-----DY~--ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~ 249 (345)
T COG3693 178 HIAREADPDAKLVIN-----DYS--IEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKL 249 (345)
T ss_pred HHHHhhCCCceEEee-----ccc--ccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhc
Confidence 367888899998865 343 33334555666777787887775 888665432222 3444556666666665
No 178
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=26.22 E-value=3.7e+02 Score=23.36 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=46.4
Q ss_pred cCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhccC
Q 041898 108 NQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRNL 187 (355)
Q Consensus 108 ~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~~v 187 (355)
-||++. .-+..+++.+.+.|.|+|-+==- ..-+.++...+++.+|+..++-+-+ .|. +...+.+.+
T Consensus 5 iDP~k~-e~~~~ia~~v~~~gtDaI~VGGS---~gvt~~~~~~~v~~ik~~~~lPvil-fp~---------~~~~i~~~a 70 (205)
T TIGR01769 5 IDPEKS-DEIEKIAKNAKDAGTDAIMVGGS---LGIVESNLDQTVKKIKKITNLPVIL-FPG---------NVNGLSRYA 70 (205)
T ss_pred cCCCcH-HHHHHHHHHHHhcCCCEEEEcCc---CCCCHHHHHHHHHHHHhhcCCCEEE-ECC---------CccccCcCC
Confidence 355544 33444777888899999976311 1246678888899998722222222 232 345667789
Q ss_pred cEEEEeec
Q 041898 188 DWIHVLNF 195 (355)
Q Consensus 188 D~v~vm~Y 195 (355)
|.+.+|+-
T Consensus 71 D~~~~~sl 78 (205)
T TIGR01769 71 DAVFFMSL 78 (205)
T ss_pred CEEEEEEe
Confidence 99999884
No 179
>PLN02899 alpha-galactosidase
Probab=26.12 E-value=1.8e+02 Score=29.78 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEe
Q 041898 112 NRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTS 167 (355)
Q Consensus 112 ~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~ 167 (355)
.-++|.+++.+...+.|+|=|-+||-++.. .+.+.|..+-+.|++ ++...+|+..
T Consensus 192 ~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~~ey~~ms~AL~aTGRPIvySLsp 247 (633)
T PLN02899 192 AGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDLEEITYVSEVLKELDRPIVYSLSP 247 (633)
T ss_pred chhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CChHHHHHHHHHHHHhCCCeEEEecC
Confidence 345799999999999999999999986532 445668888888888 8888888873
No 180
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=25.81 E-value=2.1e+02 Score=25.79 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=32.1
Q ss_pred HHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEec
Q 041898 120 SVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSH 168 (355)
Q Consensus 120 i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~ 168 (355)
+++.+..-|||.|-||.|+-. -+......+++..+. .+...-+.+|
T Consensus 32 ~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~i~a~~~-~g~~~lVRvp 77 (256)
T PRK10558 32 TTEVLGLAGFDWLVLDGEHAP--NDVSTFIPQLMALKG-SASAPVVRVP 77 (256)
T ss_pred HHHHHHhcCCCEEEEccccCC--CCHHHHHHHHHHHhh-cCCCcEEECC
Confidence 677778889999999999753 466677777777764 2333334444
No 181
>PRK09936 hypothetical protein; Provisional
Probab=25.41 E-value=5.4e+02 Score=23.76 Aligned_cols=143 Identities=10% Similarity=0.101 Sum_probs=76.7
Q ss_pred CCccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc-chhhhhcCcHHHHHHHH--------
Q 041898 48 ALFSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA-IFSSMINQSSNRKSFIK-------- 118 (355)
Q Consensus 48 ~~~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~-~~~~~~~~~~~r~~fi~-------- 118 (355)
-.|.++|+-|-..... .+... +..+...++.+++. |+||.+.+--.. -|..+..|++..+.+.+
T Consensus 50 ~G~~tLivQWt~yG~~----~fg~~-~g~La~~l~~A~~~--Gl~v~vGL~~Dp~y~q~~~~d~~~~~~yl~~~l~~~~~ 122 (296)
T PRK09936 50 QGFDTLVVQWTRYGDA----DFGGQ-RGWLAKRLAAAQQA--GLKLVVGLYADPEFFMHQKQDGAALESYLNRQLGASLQ 122 (296)
T ss_pred cCCcEEEEEeeeccCC----Ccccc-hHHHHHHHHHHHHc--CCEEEEcccCChHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 5699999988777221 22222 44455555566666 899998886655 55666556566554443
Q ss_pred HHHHHHHcCCC--CEEEEEccCC----CCCccHHHHHHHHHHHHc--c-CCcEEEEEeccCCccccc--CCChhhhhccC
Q 041898 119 SSVEMARFNGF--HGLDLHGVLP----DKGTNITKLGTLFDEWRA--E-SQLLLVMTSHHLPALESV--SYPLDSMQRNL 187 (355)
Q Consensus 119 ~i~~~l~~~~~--DGIdiDwE~~----~~~~~~~~~~~~l~~lr~--~-~~~~ls~a~~~~~~~~~~--~yd~~~l~~~v 187 (355)
....+-+..++ +|--|-.|-- .+++.+..+...|+.+.. + .+.-|.|++..+...... ..-+..+.+ +
T Consensus 123 qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay~~g~~sP~~l~~Wl~~l~~-~ 201 (296)
T PRK09936 123 QARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISAFFAGNMSPDGYRQWLEQLKA-T 201 (296)
T ss_pred HHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEeecccCCChHHHHHHHHHHhh-c
Confidence 33344455556 8987777732 122344555556666555 3 223444444332111111 112444444 2
Q ss_pred cEEEEeeccCcC
Q 041898 188 DWIHVLNFDYYL 199 (355)
Q Consensus 188 D~v~vm~YD~~~ 199 (355)
+ +.||.=|=.|
T Consensus 202 ~-l~V~~QDGvG 212 (296)
T PRK09936 202 G-VNVWVQDGSG 212 (296)
T ss_pred C-CeEEEEcCCC
Confidence 3 5677777444
No 182
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=25.32 E-value=1.7e+02 Score=26.73 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=43.6
Q ss_pred HHHHHhcCCC-cEEEEEEcCCc----chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 81 TNTVKHRNPS-VVTLLSIWGGA----IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 81 ~~~lk~~~~~-~kvllsiGG~~----~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
++.++...+. ..+++.=-||. .+.....+.++++.|++++..-|+.-|+|=+-|
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvf 279 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVF 279 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEe
Confidence 4566665555 77888888887 677777888999999999999999999887655
No 183
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=25.31 E-value=4.9e+02 Score=23.15 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEE-----cCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSI-----WGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKL 148 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsi-----GG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~ 148 (355)
......++..+++...++++++++ ||. +. .+++.|.++. .......+.|=|||.++.. .+.+.+
T Consensus 46 ~~~~~~~i~~l~~~~~~~p~I~T~Rt~~EGG~--~~---~~~~~~~~ll---~~~~~~~~~d~vDiE~~~~---~~~~~~ 114 (238)
T PRK13575 46 VDQLAEMITKLKVLQDSFKLLVTYRTKLQGGY--GQ---FTNDLYLNLL---SDLANINGIDMIDIEWQAD---IDIEKH 114 (238)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEeCChhhCCC--CC---CCHHHHHHHH---HHHHHhCCCCEEEEEcccC---CChHHH
Confidence 344555666677655678999999 442 21 1344454443 3445556689999988742 234556
Q ss_pred HHHHHHHHc
Q 041898 149 GTLFDEWRA 157 (355)
Q Consensus 149 ~~~l~~lr~ 157 (355)
..+++..+.
T Consensus 115 ~~l~~~~~~ 123 (238)
T PRK13575 115 QRLITHLQQ 123 (238)
T ss_pred HHHHHHHHH
Confidence 666666664
No 184
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.20 E-value=88 Score=28.93 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=28.3
Q ss_pred hcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCC
Q 041898 107 INQSSNRKSFIKSSVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 107 ~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~ 139 (355)
..|++.|+=+.+.+.+++.++|+||+=+|+-.|
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 457888988988888899899999999999655
No 185
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=25.17 E-value=2.3e+02 Score=25.02 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCc--------chhhhhc----CcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGA--------IFSSMIN----QSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~--------~~~~~~~----~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~ 140 (355)
-.++++++++-+|...|..++++---+-- ..+..+. ..+.-...++.++++.++-|+++||+ |....
T Consensus 98 y~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl-ws~~Q 176 (245)
T KOG3035|consen 98 YKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL-WSKMQ 176 (245)
T ss_pred HHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH-Hhhhh
Confidence 35678888888888888888876443311 2222222 23445568999999999999999999 43211
Q ss_pred C-----------------CccHHHHHHHHHHHHc
Q 041898 141 K-----------------GTNITKLGTLFDEWRA 157 (355)
Q Consensus 141 ~-----------------~~~~~~~~~~l~~lr~ 157 (355)
. ...+--|.++++.+++
T Consensus 177 ~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~kvl~e 210 (245)
T KOG3035|consen 177 ESDDWQTSCLTDGLHLSPKGNKIVFDEILKVLKE 210 (245)
T ss_pred hcccHHHHHhccceeeccccchhhHHHHHHHHHh
Confidence 1 1234456677777776
No 186
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=25.01 E-value=3.3e+02 Score=21.13 Aligned_cols=65 Identities=6% Similarity=0.152 Sum_probs=39.8
Q ss_pred EEEeCCCcEEEeCCC--ChHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 58 AFINSSTYNIFINST--SEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 58 ~~~~~~~~~~~~~~~--~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
+.++.+| .+.+.+. +...+...++.+++++|+..|.+..-. +..-.-+-.+++.+++.|+.-|.|
T Consensus 52 i~I~~~g-~~~~~~~~v~~~~L~~~l~~~~~~~~~~~v~I~aD~-----------~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 52 VSVKADL-SLFVGNDPVARETLGTALDALTEGDKDTTIFFRADK-----------TVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred EEEeCCC-CEEECCccCCHHHHHHHHHHHHhcCCCceEEEEcCC-----------CCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4566654 4554433 334444444556677788777765333 334456667899999999887655
No 187
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=24.99 E-value=2.5e+02 Score=24.92 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=38.0
Q ss_pred HHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhc-cCcEEEEeecc
Q 041898 120 SVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQR-NLDWIHVLNFD 196 (355)
Q Consensus 120 i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~-~vD~v~vm~YD 196 (355)
.++.+.+.|.||+-+--.. .+....+++.+++ .+....+.+.+... .+ .+..+.+ ..|++.+|+..
T Consensus 96 fi~~~~~aG~~giiipDl~------~ee~~~~~~~~~~-~g~~~i~~i~P~T~-~~---~i~~i~~~~~~~vy~~s~~ 162 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLP------PEEAEEFREAAKE-YGLDLIFLVAPTTP-DE---RIKKIAELASGFIYYVSRT 162 (242)
T ss_pred HHHHHHHCCCcEEEECCCC------HHHHHHHHHHHHH-cCCcEEEEeCCCCC-HH---HHHHHHhhCCCCEEEEeCC
Confidence 3445566799999994331 1245567777775 23333333333221 11 2455666 78999999963
No 188
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=24.36 E-value=59 Score=29.28 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=25.1
Q ss_pred EEEEeeccCcCCCCCCCCCCCCCCCCccc------ccc-----cCceEEeceeeeeee
Q 041898 189 WIHVLNFDYYLPTRDNFTGAHSALYSSSR------WFN-----TNDTVLGLPYHGYAW 235 (355)
Q Consensus 189 ~v~vm~YD~~~~~~~~~~g~~apl~~~~~------~~~-----~~KlvlGlp~yG~~~ 235 (355)
.+|+|+|||.|. +..+|-++-...-.+ |++ +++|+ .||++-
T Consensus 88 n~nv~~~DYSGy--G~S~G~psE~n~y~Di~avye~Lr~~~g~~~~Ii----l~G~Si 139 (258)
T KOG1552|consen 88 NCNVVSYDYSGY--GRSSGKPSERNLYADIKAVYEWLRNRYGSPERII----LYGQSI 139 (258)
T ss_pred cceEEEEecccc--cccCCCcccccchhhHHHHHHHHHhhcCCCceEE----EEEecC
Confidence 579999999985 445555555532211 665 46665 366653
No 189
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=24.35 E-value=2.3e+02 Score=25.35 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=31.6
Q ss_pred HHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEec
Q 041898 120 SVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSH 168 (355)
Q Consensus 120 i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~ 168 (355)
+++.+..-|||.|-||.|+-. -+......+++..+. .+...-+.+|
T Consensus 25 ~~e~~a~~G~D~v~iD~EHg~--~~~~~~~~~~~a~~~-~g~~~~VRvp 70 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGEHAP--NDVLTFIPQLMALKG-SASAPVVRPP 70 (249)
T ss_pred HHHHHHhcCCCEEEEecccCC--CCHHHHHHHHHHHhh-cCCCcEEECC
Confidence 667777889999999999753 356667777777764 2333334444
No 190
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.17 E-value=5.6e+02 Score=23.46 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=40.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEecc
Q 041898 110 SSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTSHH 169 (355)
Q Consensus 110 ~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~~~ 169 (355)
...-..+++.-.++.++.|++...+.+... .+.+.|..++++|++ ..-.-+-+.+|.
T Consensus 44 ~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~---~~~~~l~~~i~~Ln~d~~v~Gi~VqlPl 101 (283)
T PRK14192 44 DPASATYVRMKGNACRRVGMDSLKVELPQE---TTTEQLLAKIEELNANPDVHGILLQHPV 101 (283)
T ss_pred ChhHHHHHHHHHHHHHHcCCeEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 346678999999999999999998888421 234568999999988 322334444453
No 191
>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []. Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....
Probab=24.03 E-value=2.5e+02 Score=20.14 Aligned_cols=44 Identities=18% Similarity=0.086 Sum_probs=28.0
Q ss_pred HHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccC
Q 041898 122 EMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHL 170 (355)
Q Consensus 122 ~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~ 170 (355)
.+.++.|+|++-+-++-. .+.+..+++.++...-.-+++++|..
T Consensus 17 ~~f~~~g~~~~Y~~~~v~-----~~~l~~~~~~~~~~~~~G~~VT~P~K 60 (83)
T PF08501_consen 17 AAFEALGLDAVYIPFEVE-----PEDLEDFLDALRAPNFRGLNVTMPHK 60 (83)
T ss_dssp HHHHHTTSSEEEEEEETS-----TTCHHHHHHHHHHTTESEEEE-TTST
T ss_pred HHHHHcCCCcEEEEeecC-----HHHHHHHHHHHhcCCCCeeeecchHH
Confidence 356788999988877733 23466667777663344577777754
No 192
>PRK01060 endonuclease IV; Provisional
Probab=23.83 E-value=1.2e+02 Score=27.27 Aligned_cols=23 Identities=17% Similarity=0.145 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCCCEEEEEccCC
Q 041898 117 IKSSVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 117 i~~i~~~l~~~~~DGIdiDwE~~ 139 (355)
+...++.+++.|||||+|.-+.|
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p 36 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNP 36 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCC
Confidence 55678899999999999987655
No 193
>KOG3233 consensus RNA polymerase III, subunit C34 [Transcription]
Probab=23.77 E-value=2.8e+02 Score=25.29 Aligned_cols=77 Identities=10% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHh-cCCCcEEEEE--------EcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-----CCcc
Q 041898 79 IFTNTVKH-RNPSVVTLLS--------IWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-----KGTN 144 (355)
Q Consensus 79 ~~~~~lk~-~~~~~kvlls--------iGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-----~~~~ 144 (355)
.+++..|. ++++.|+.+. |.|+..|++-.-|-+-.+.+.+.+..|++++.+--+ ...|.|. +-..
T Consensus 128 kLIKsVKsv~n~~~KvYmLy~leP~~elTGG~WytDqdlDvEfIe~L~~~c~~fl~~~~~~~~-~~~~gp~~~~~~~~~t 206 (297)
T KOG3233|consen 128 KLIKSVKSVKNSRKKVYMLYDLEPDSELTGGTWYTDQDLDVEFIEVLKQICVRFLESKRFPAE-KNVEGPMFVRNESYPT 206 (297)
T ss_pred HHHHHHHhhcCCCceEEEEecccccccccCCcccccccccHHHHHHHHHHHHHHHHhcccchh-hccccchhhhhccCCC
Confidence 34445555 4667788753 445445676666667777788888888888654333 3333331 1122
Q ss_pred HHHHHHHHHHHH
Q 041898 145 ITKLGTLFDEWR 156 (355)
Q Consensus 145 ~~~~~~~l~~lr 156 (355)
......||+++.
T Consensus 207 ~~ei~~~i~~l~ 218 (297)
T KOG3233|consen 207 VQEIKEFIRNLN 218 (297)
T ss_pred HHHHHHHHHHcC
Confidence 344556676665
No 194
>PLN02803 beta-amylase
Probab=23.75 E-value=2.3e+02 Score=28.44 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCCC------CCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLPD------KGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~~------~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
+.+.++ .+.|+..|+|||.+|.-|-. ..-++..|.+|.+-+|+ +-+++..++.+
T Consensus 107 ~~l~~~-L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~vmSFH 167 (548)
T PLN02803 107 RAMNAS-LMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQVVMSFH 167 (548)
T ss_pred HHHHHH-HHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 444444 45668899999999954321 12577889999988887 55555555554
No 195
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=23.75 E-value=2e+02 Score=30.49 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCCcEE---EEEEcC-Ccc-------hh----------------------------hhhcCcHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVT---LLSIWG-GAI-------FS----------------------------SMINQSSNRKS 115 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kv---llsiGG-~~~-------~~----------------------------~~~~~~~~r~~ 115 (355)
..++.+++.+|+++|++|= +-+|-| |+. +. --+-+|+.-.+
T Consensus 390 ~Glk~~v~~ik~k~~~vk~VyVWHAL~GYWGGV~P~~~~y~~k~~~p~~spg~~~~~~d~a~d~i~~~G~glv~P~~~~~ 469 (865)
T PLN02982 390 SGMKAFTRDLRTKFKGLDDIYVWHALCGAWGGVRPGTTHLNAKVVPARLSPGLDGTMNDLAVDKIVEGGIGLVHPSQAGD 469 (865)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEeeeccCcccCcCCCCCCCcceEEecccCccccccCcchhhhheecCceeccCHHHHHH
Confidence 5788999999999987754 344433 430 00 01225777899
Q ss_pred HHHHHHHHHHcCCCCEEEEEccC
Q 041898 116 FIKSSVEMARFNGFHGLDLHGVL 138 (355)
Q Consensus 116 fi~~i~~~l~~~~~DGIdiDwE~ 138 (355)
|-+..-.+|.+.|+|||-+|-..
T Consensus 470 FYd~~hsyLas~GVDgVKVDvQ~ 492 (865)
T PLN02982 470 FYDSMHSYLASVGITGVKVDVIH 492 (865)
T ss_pred HHHHHHHHHHHcCCCeEEEchhh
Confidence 99999999999999999999764
No 196
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=23.50 E-value=1.3e+02 Score=29.78 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc
Q 041898 109 QSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA 157 (355)
Q Consensus 109 ~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~ 157 (355)
++.-|+.+++.+..+++++|+||+-||--.-.. ..-+..+.+++++
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~---~~f~~~~~~~~~~ 252 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAVKHID---AWFIKEWIEHVRE 252 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC---HHHHHHHHHHHHH
Confidence 566778888777767777999999999653322 3345566777765
No 197
>PRK12855 hypothetical protein; Provisional
Probab=23.36 E-value=1.5e+02 Score=22.78 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.2
Q ss_pred EcCCc-chhhhhcCcHHHHHHHHHHHHHHHcCCCC---EEEEEccC
Q 041898 97 IWGGA-IFSSMINQSSNRKSFIKSSVEMARFNGFH---GLDLHGVL 138 (355)
Q Consensus 97 iGG~~-~~~~~~~~~~~r~~fi~~i~~~l~~~~~D---GIdiDwE~ 138 (355)
+||.. .+..++. +.|+..++.+++-.++.|.| |+++|.+.
T Consensus 43 vGG~~~~Y~~~l~--~aR~~A~~rm~~~A~~lGAnAVVgvr~d~~~ 86 (103)
T PRK12855 43 VGGRSGAYESKLK--EARDIAMEEMKTLARQKNANAIVGIDVDYEV 86 (103)
T ss_pred hcCchHHHHHHHH--HHHHHHHHHHHHHHHHcCCCEEEEEEEEhhH
Confidence 46665 7888874 67999999999999999998 66777764
No 198
>PLN02705 beta-amylase
Probab=23.18 E-value=2e+02 Score=29.46 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCCC------CCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLPD------KGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~~------~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
+.+.+++ +.|+..|+|||.+|.-|-. ..-++..|.+|++-+|+ +-++...++.+
T Consensus 268 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFH 328 (681)
T PLN02705 268 EGVRQEL-SHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFH 328 (681)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEee
Confidence 4444444 5568899999999954321 12578889999988887 55555555555
No 199
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=23.18 E-value=2.6e+02 Score=19.34 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHH
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVE 122 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~ 122 (355)
.-.++.++++.+.|+..|-+--|+.+.++..-...+. +..+..+++
T Consensus 9 L~~EL~kRl~~~yPd~~v~Vr~~s~~~l~v~g~~~~~-k~~i~~iLq 54 (65)
T PF06183_consen 9 LESELTKRLHRQYPDAEVRVRPGSANGLSVSGGKKDD-KERIEEILQ 54 (65)
T ss_dssp HHHHHHHHHHHH-SS-EEEEEEESS-EEEEES--HHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCceEeeeecccCccccCCcCchH-HHHHHHHHH
Confidence 3456778899999999999888776533333222222 445555544
No 200
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=22.59 E-value=5.9e+02 Score=23.17 Aligned_cols=71 Identities=11% Similarity=0.177 Sum_probs=42.9
Q ss_pred CcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCC------ccHHHHHHHHHHHHccCCcEE
Q 041898 90 SVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKG------TNITKLGTLFDEWRAESQLLL 163 (355)
Q Consensus 90 ~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~------~~~~~~~~~l~~lr~~~~~~l 163 (355)
.+.|++|+.|.. +...+.+++.+.++- .+.|.++|++-.|... .+.+....+++.+++..+.-+
T Consensus 96 ~~pvi~Si~~~~--------~~~~~d~~~~a~~~~--~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv 165 (295)
T PF01180_consen 96 DIPVIASINGDS--------EEEIEDWAELAKRLE--AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAVDIPV 165 (295)
T ss_dssp CEEEEEEE-TSS--------SGHHHHHHHHHHHHH--HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEE
T ss_pred ceeEEEEeecCC--------chhHHHHHHHHHHhc--CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhccCCCE
Confidence 689999999952 233445554444333 5699999999877542 222334455566665446677
Q ss_pred EEEeccC
Q 041898 164 VMTSHHL 170 (355)
Q Consensus 164 s~a~~~~ 170 (355)
.+-+++.
T Consensus 166 ~vKL~p~ 172 (295)
T PF01180_consen 166 FVKLSPN 172 (295)
T ss_dssp EEEE-ST
T ss_pred EEEecCC
Confidence 7777764
No 201
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=22.37 E-value=3.4e+02 Score=23.07 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE-cCCc--chhhhhc-CcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSI-WGGA--IFSSMIN-QSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi-GG~~--~~~~~~~-~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
-......+++.+++++|++.|++.= -... .+..-.. ......+.++.+++-+++.|...|.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 3566778899999999999887543 1221 2222111 22344456667777777767665543
No 202
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.25 E-value=1.1e+02 Score=29.91 Aligned_cols=60 Identities=7% Similarity=0.065 Sum_probs=40.2
Q ss_pred hhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc--cCCcEEEE
Q 041898 104 SSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA--ESQLLLVM 165 (355)
Q Consensus 104 ~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~--~~~~~ls~ 165 (355)
...+++...|++.+..|+++|.+.|||| -|-..+.-.|.. ..|....+-|.. .+++.++.
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~PS~-k~F~~IFK~LY~~lDp~f~F~~ 158 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQPSQ-KGFIIIFKWLYLRLDPGFGFTK 158 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcCCcc-ccHHHHHHHHHhccCCCCCcch
Confidence 4567788899999999999999999998 222211112222 457777777776 44554443
No 203
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=22.03 E-value=2.7e+02 Score=29.15 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE-------c---CCc-ch-------------------------hhhhcCcHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSI-------W---GGA-IF-------------------------SSMINQSSNRKSFIK 118 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsi-------G---G~~-~~-------------------------~~~~~~~~~r~~fi~ 118 (355)
..++.+++++|+. |+.|+|=| | |-. .| ..-.+.+..|+-.++
T Consensus 265 ~EfK~mV~~lHka--GI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 265 KEFKDMVKALHKA--GIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHc--CCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 3578888888887 89999877 1 111 11 112223677888899
Q ss_pred HHHHHHHcCCCCEEEEEccCC
Q 041898 119 SSVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 119 ~i~~~l~~~~~DGIdiDwE~~ 139 (355)
+|.=|+++++.||.-||.-..
T Consensus 343 sLrYWv~e~hVDGFRFDLa~~ 363 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLAGV 363 (697)
T ss_pred HHHHHHHHhCCCceeecchhh
Confidence 999999999999999998643
No 204
>PLN02801 beta-amylase
Probab=22.00 E-value=2.7e+02 Score=27.80 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCCC------CCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLPD------KGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~~------~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
.+-+++-.+.|+..|+|||.+|.-|-. ..-++..|.++.+-+|+ +-+++..++.+
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq~vmSFH 97 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQAIMSFH 97 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 334445556778999999999954321 12577889999998887 55555555555
No 205
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=22.00 E-value=4.7e+02 Score=23.32 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHH--HHHHHHHHHcCCCCEEEEEccCCCC-----CccHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSF--IKSSVEMARFNGFHGLDLHGVLPDK-----GTNITK 147 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~f--i~~i~~~l~~~~~DGIdiDwE~~~~-----~~~~~~ 147 (355)
+.+..+++.+|...++.+++..+-.. + .|..- --.+.+.+.+.||||+-||=-.-.. .-+.+.
T Consensus 99 e~l~~v~~av~~~~~~~~vVAv~yAD--~--------~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~ 168 (235)
T PF04476_consen 99 EALEAVVRAVKDFDPDKKVVAVGYAD--A--------QRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEE 168 (235)
T ss_pred HHHHHHHHHHhhhCCCcEEEEEEecc--h--------hhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHH
Confidence 34556666777777777876664331 1 11110 1246788889999999999653221 234566
Q ss_pred HHHHHHHHHc
Q 041898 148 LGTLFDEWRA 157 (355)
Q Consensus 148 ~~~~l~~lr~ 157 (355)
+..|+++.|+
T Consensus 169 L~~Fv~~ar~ 178 (235)
T PF04476_consen 169 LAEFVAQARA 178 (235)
T ss_pred HHHHHHHHHH
Confidence 7778887774
No 206
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.98 E-value=2.6e+02 Score=26.20 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=47.5
Q ss_pred EEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCC-----------CccHHHHHHHHHHHHc-cC
Q 041898 92 VTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDK-----------GTNITKLGTLFDEWRA-ES 159 (355)
Q Consensus 92 kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~-----------~~~~~~~~~~l~~lr~-~~ 159 (355)
.+.+-|+|. +| .......+.+.+.|+|+|||+.-=|.. -.+.+...++++++++ -+
T Consensus 68 p~~vQl~gs--------dp----~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~ 135 (323)
T COG0042 68 PVAVQLGGS--------DP----ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG 135 (323)
T ss_pred CEEEEecCC--------CH----HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC
Confidence 477788884 22 344556777888899999999876642 2567788899999999 22
Q ss_pred CcEEEEEeccC
Q 041898 160 QLLLVMTSHHL 170 (355)
Q Consensus 160 ~~~ls~a~~~~ 170 (355)
+.-+|+-+-.+
T Consensus 136 ~iPVTVKiRlG 146 (323)
T COG0042 136 DIPVTVKIRLG 146 (323)
T ss_pred CCCeEEEEecc
Confidence 56666666544
No 207
>PF14443 DBC1: DBC1
Probab=21.97 E-value=72 Score=25.38 Aligned_cols=38 Identities=21% Similarity=0.465 Sum_probs=22.9
Q ss_pred EEEEEcCCcchhhhhc--CcHH-HHHHHHHHHHHHHcCCCCEEEE
Q 041898 93 TLLSIWGGAIFSSMIN--QSSN-RKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 93 vllsiGG~~~~~~~~~--~~~~-r~~fi~~i~~~l~~~~~DGIdi 134 (355)
=+.+||| .|+..+. ||.. -..+|+..++..+.+ -||||
T Consensus 18 e~~aiGG--~WspsLDG~DP~~dp~~LI~TAiR~~K~~--tgiDL 58 (126)
T PF14443_consen 18 EIMAIGG--PWSPSLDGGDPSSDPSVLIRTAIRTCKAL--TGIDL 58 (126)
T ss_pred eEEecCC--cCCcccCCCCCCCCcHHHHHHHHHHHHHH--hccch
Confidence 4788999 2332221 3322 467888888888874 45655
No 208
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=21.89 E-value=5.7e+02 Score=22.71 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHH
Q 041898 76 FFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEW 155 (355)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~l 155 (355)
...++++.+|+. ++||++|- +..-..|. .+.+. ++++-++++|.|=+-|-.- | .+..+...+++.+
T Consensus 113 ~~~~l~~~~~~~--~~~vI~S~------H~F~~TP~-~~~l~-~~~~~m~~~gaDi~KiAv~-~---~~~~Dvl~Ll~~~ 178 (238)
T PRK13575 113 KHQRLITHLQQY--NKEVVISH------HNFESTPP-LDELK-FIFFKMQKFNPEYVKLAVM-P---HNKNDVLNLLQAM 178 (238)
T ss_pred HHHHHHHHHHHc--CCEEEEec------CCCCCCCC-HHHHH-HHHHHHHHhCCCEEEEEec-C---CCHHHHHHHHHHH
Confidence 344455444443 67888873 33333332 22333 5777777777777777554 2 3334444444443
No 209
>PRK10397 lipoprotein; Provisional
Probab=21.87 E-value=2.9e+02 Score=22.01 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhhhcc-------CCCCcEEEEEecCCCCCCccccCCCCccEEEEEEEEEeCCCcEEE
Q 041898 8 LFLLLTLSLPLNLQCT-------RSPNWIRGGYWHAHSELPIAEIHSALFSHLMCAFAFINSSTYNIF 68 (355)
Q Consensus 8 ~~l~~~~~~~~~~~~~-------~~~~~~~~~Y~~~~~~~~~~~~~~~~~thvi~~f~~~~~~~~~~~ 68 (355)
+++.+++.+.++++.. .+.+.-..|||.+-+... .+++....+.+.++.+|..+.
T Consensus 5 i~~~a~~~LaGCa~~~nY~~vvktPaPa~l~GyWqs~gpq~------~lvSp~AiaSLivt~~Gdtld 66 (137)
T PRK10397 5 AIAGALMALAGCAEVENYNDVVKTPAPAGLAGYWQTKGPQR------ALVSPEAIASLIVTKEGDTLD 66 (137)
T ss_pred HHHHHHHHhhccccccchHhhhcCCCCccccceeeccCCcc------cccCccceEEEEEecCCCEEe
Confidence 4445555666665543 244455689998744332 345555566677777775443
No 210
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.72 E-value=95 Score=22.67 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=24.9
Q ss_pred hhhhhcCcHHHHHHHHHHHHHHHcCCCC
Q 041898 103 FSSMINQSSNRKSFIKSSVEMARFNGFH 130 (355)
Q Consensus 103 ~~~~~~~~~~r~~fi~~i~~~l~~~~~D 130 (355)
+..+.++++.|++|.+.=-.++++||++
T Consensus 10 i~~L~~dp~~rerF~~DPea~~~~~gLt 37 (81)
T cd07922 10 IQELFKDPGLIERFQDDPSAVFEEYGLT 37 (81)
T ss_pred HHHHhcCHHHHHHHHHCHHHHHHHcCCC
Confidence 5667789999999999999999999876
No 211
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=21.61 E-value=2.5e+02 Score=18.76 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCCCEE-EEEccCCCCCccHHHHHHHHHHHH
Q 041898 118 KSSVEMARFNGFHGL-DLHGVLPDKGTNITKLGTLFDEWR 156 (355)
Q Consensus 118 ~~i~~~l~~~~~DGI-diDwE~~~~~~~~~~~~~~l~~lr 156 (355)
+.+++.|++.|+||. .|.||-+.- +....+..=++-||
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr 41 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLR 41 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHH
Confidence 357888999999985 788885432 23334443333333
No 212
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=21.59 E-value=3.7e+02 Score=26.59 Aligned_cols=77 Identities=9% Similarity=0.091 Sum_probs=47.7
Q ss_pred ccEEEEEEEEEeCCCcEEEeCCCChHHHHHHHHHHHhcCCCcEEEEEEcCCc---chhhh---hcCcHHHHHHHHHHHHH
Q 041898 50 FSHLMCAFAFINSSTYNIFINSTSEQFFVIFTNTVKHRNPSVVTLLSIWGGA---IFSSM---INQSSNRKSFIKSSVEM 123 (355)
Q Consensus 50 ~thvi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGG~~---~~~~~---~~~~~~r~~fi~~i~~~ 123 (355)
|-.+.++|..+-|++..-......-..|.++++.++++ |++.++.+--|. .+..- -.|.+..+.|++=+...
T Consensus 75 ~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~--gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~v 152 (460)
T COG2723 75 AFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKAR--GIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATV 152 (460)
T ss_pred EEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHH
Confidence 55677788888776633233333456688899999988 799999995554 11111 13445555666666666
Q ss_pred HHcCC
Q 041898 124 ARFNG 128 (355)
Q Consensus 124 l~~~~ 128 (355)
+++++
T Consensus 153 f~~f~ 157 (460)
T COG2723 153 FERFG 157 (460)
T ss_pred HHHhc
Confidence 66554
No 213
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=21.56 E-value=2.1e+02 Score=21.08 Aligned_cols=47 Identities=9% Similarity=-0.003 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEccCCCC---------CccHHHHHHHHHHHHc
Q 041898 111 SNRKSFIKSSVEMARFNGFHGLDLHGVLPDK---------GTNITKLGTLFDEWRA 157 (355)
Q Consensus 111 ~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~---------~~~~~~~~~~l~~lr~ 157 (355)
...+.....+.+.+++++++=--+|-|+.-+ .+++-+|..|+++|..
T Consensus 22 ~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~ 77 (88)
T PF04468_consen 22 EREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAR 77 (88)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHH
Confidence 3445566777788888888877777776643 4778899999999976
No 214
>PRK08508 biotin synthase; Provisional
Probab=21.56 E-value=1.5e+02 Score=27.06 Aligned_cols=69 Identities=6% Similarity=-0.009 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC-------CCccH
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD-------KGTNI 145 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~-------~~~~~ 145 (355)
.-..+.++++.+|+..|++++..+.|-. ....++.|++.|+|.+.++.|-.. ...+.
T Consensus 73 ~~e~~~ei~~~ik~~~p~l~i~~s~G~~----------------~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~ 136 (279)
T PRK08508 73 KLEYVAEAAKAVKKEVPGLHLIACNGTA----------------SVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTW 136 (279)
T ss_pred cHHHHHHHHHHHHhhCCCcEEEecCCCC----------------CHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCH
Confidence 3455677777888888888887775442 255677788999999999988421 11334
Q ss_pred HHHHHHHHHHHc
Q 041898 146 TKLGTLFDEWRA 157 (355)
Q Consensus 146 ~~~~~~l~~lr~ 157 (355)
..-.+.++..++
T Consensus 137 ~~~l~~i~~a~~ 148 (279)
T PRK08508 137 EERFQTCENAKE 148 (279)
T ss_pred HHHHHHHHHHHH
Confidence 444556666554
No 215
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=21.50 E-value=3.4e+02 Score=24.29 Aligned_cols=111 Identities=9% Similarity=0.079 Sum_probs=58.0
Q ss_pred EEEEEEeCC--CcEEEeCCCChHHHHHHHHHHHhcCCCcEEE-EEEcCCcchhhhhcCcHHHHH---HHHHHHHHHHcCC
Q 041898 55 CAFAFINSS--TYNIFINSTSEQFFVIFTNTVKHRNPSVVTL-LSIWGGAIFSSMINQSSNRKS---FIKSSVEMARFNG 128 (355)
Q Consensus 55 ~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl-lsiGG~~~~~~~~~~~~~r~~---fi~~i~~~l~~~~ 128 (355)
|-|+.+.-| .-++.--|.++.....+++.+.+. ++.+= +++.+...|.--..|++.|++ .-...+.+.++.|
T Consensus 32 FDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~et--gv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLG 109 (287)
T COG3623 32 FDFVEMSVDESDERLARLDWSKEERLALVNAIQET--GVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLG 109 (287)
T ss_pred CCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHh--CCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 445544333 223333333455555566666665 44322 334443344444567777765 3455566666654
Q ss_pred -----CCEEEEEccCCCCCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 129 -----FHGLDLHGVLPDKGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 129 -----~DGIdiDwE~~~~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
+-|-|+.+| +.+++.+..|..=++.-.+ .....+++|+-
T Consensus 110 IRtIQLAGYDVYYE-~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvE 154 (287)
T COG3623 110 IRTIQLAGYDVYYE-EADEETRQRFIEGLKWAVELAARAQVMLAVE 154 (287)
T ss_pred ceeEeeccceeeec-cCCHHHHHHHHHHHHHHHHHHHhhccEEEee
Confidence 678899999 4444555555444443333 45555666654
No 216
>PRK10426 alpha-glucosidase; Provisional
Probab=21.38 E-value=3.1e+02 Score=28.42 Aligned_cols=61 Identities=8% Similarity=-0.137 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCc-----chhh----------------------------hhcCcHHHHHHHHHHH
Q 041898 75 QFFVIFTNTVKHRNPSVVTLLSIWGGA-----IFSS----------------------------MINQSSNRKSFIKSSV 121 (355)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGG~~-----~~~~----------------------------~~~~~~~r~~fi~~i~ 121 (355)
+..+++++.||++ ++|+++.|--.- .|.. =+.|++.|+=|.+.+.
T Consensus 269 Pdp~~mi~~L~~~--G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~ 346 (635)
T PRK10426 269 PQLDSRIKQLNEE--GIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIK 346 (635)
T ss_pred CCHHHHHHHHHHC--CCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHH
Confidence 3456788888887 799998874310 1111 1457889998888888
Q ss_pred HHHHcCCCCEEEEEcc
Q 041898 122 EMARFNGFHGLDLHGV 137 (355)
Q Consensus 122 ~~l~~~~~DGIdiDwE 137 (355)
+.+.+.|+||+=.|+-
T Consensus 347 ~~~~~~Gvdg~w~D~~ 362 (635)
T PRK10426 347 KNMIGLGCSGWMADFG 362 (635)
T ss_pred HHHhhcCCCEEeeeCC
Confidence 8999999999988874
No 217
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=21.09 E-value=1.1e+02 Score=22.21 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHhhhhhhccCCCCcEEEEEecC
Q 041898 1 MAYKIVTLFLLLTLSLPLNLQCTRSPNWIRGGYWHA 36 (355)
Q Consensus 1 M~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~ 36 (355)
|=.|+++.+++.++++. +.+.--.+..+.+-||..
T Consensus 1 MF~Kc~~~l~l~~f~i~-S~q~v~~p~~v~~pyy~a 35 (84)
T PF07312_consen 1 MFQKCIIVLLLCLFCIS-SSQQVYTPEVVSSPYYYA 35 (84)
T ss_pred ChHHHHHHHHHHHHHHh-hcceeeccceeccccccc
Confidence 66777777766655443 334333455555555544
No 218
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=20.99 E-value=4.1e+02 Score=23.86 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=38.3
Q ss_pred HHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhccCc-EEEEeec
Q 041898 121 VEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRNLD-WIHVLNF 195 (355)
Q Consensus 121 ~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD-~v~vm~Y 195 (355)
++.+.+.|.|||-|.-+ |. +....+++.+++ .++.+...+.+.+. .+ .+..+.+.+| |+.+|+-
T Consensus 108 ~~~~~~aGvdgviipDl-p~-----ee~~~~~~~~~~-~gl~~i~lv~P~T~-~e---ri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 108 YAKCKEVGVDGVLVADL-PL-----EESGDLVEAAKK-HGVKPIFLVAPNAD-DE---RLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred HHHHHHcCCCEEEECCC-Ch-----HHHHHHHHHHHH-CCCcEEEEECCCCC-HH---HHHHHHHhCCCCEEEEEC
Confidence 44556779999999866 22 234556666664 23333333333221 11 3567778888 9999985
No 219
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.94 E-value=2.9e+02 Score=22.70 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=35.7
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEcCCcc-hh---hhhcCcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 73 SEQFFVIFTNTVKHRNPSVVTLLSIWGGAI-FS---SMINQSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGG~~~-~~---~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
-...+..+++.+++++|+.+|++.- -... .. .........+.+.+.+.++.++++..=||+
T Consensus 79 ~~~~~~~li~~i~~~~~~~~iv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~ 143 (189)
T cd01825 79 YRQQLREFIKRLRQILPNASILLVG-PPDSLQKTGAGRWRTPPGLDAVIAAQRRVAKEEGIAFWDL 143 (189)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEc-CCchhccCCCCCcccCCcHHHHHHHHHHHHHHcCCeEEeH
Confidence 3566788888889888999988642 2110 00 001112344566667777777777554444
No 220
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=20.89 E-value=5e+02 Score=24.35 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCCCEEEEEccCCC
Q 041898 118 KSSVEMARFNGFHGLDLHGVLPD 140 (355)
Q Consensus 118 ~~i~~~l~~~~~DGIdiDwE~~~ 140 (355)
...++.|.+.++|.|.|..+.+.
T Consensus 95 ~e~~~~L~~~g~~~v~iSldg~~ 117 (358)
T TIGR02109 95 EARLDALADAGLDHVQLSFQGVD 117 (358)
T ss_pred HHHHHHHHhCCCCEEEEeCcCCC
Confidence 34667777889999999988653
No 221
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.88 E-value=3.8e+02 Score=23.75 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=39.4
Q ss_pred HHHHHcCCCCEEEEE---ccCCCCCccHHHHHHHHHHHHccCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeecc
Q 041898 121 VEMARFNGFHGLDLH---GVLPDKGTNITKLGTLFDEWRAESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNFD 196 (355)
Q Consensus 121 ~~~l~~~~~DGIdiD---wE~~~~~~~~~~~~~~l~~lr~~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~YD 196 (355)
++.+.+.|.|||-|. +|. .+....+++.+++ .++...+.+.+.+. .+ .+..+.+.+|.+.+|+-+
T Consensus 94 i~~~~~~Gadgvii~dlp~e~------~~~~~~~~~~~~~-~Gl~~~~~v~p~T~-~e---~l~~~~~~~~~~l~msv~ 161 (244)
T PRK13125 94 LNMARDVGADGVLFPDLLIDY------PDDLEKYVEIIKN-KGLKPVFFTSPKFP-DL---LIHRLSKLSPLFIYYGLR 161 (244)
T ss_pred HHHHHHcCCCEEEECCCCCCc------HHHHHHHHHHHHH-cCCCEEEEECCCCC-HH---HHHHHHHhCCCEEEEEeC
Confidence 444567899999996 331 1234456666664 34444455544321 11 357778889999999754
No 222
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.76 E-value=1.3e+02 Score=27.05 Aligned_cols=108 Identities=10% Similarity=0.080 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHH
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFD 153 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~ 153 (355)
+..+++.++.+|++ + |.++.||+ .|..+.. +.-++.-++.+++.|||.|+|.=-... -..+....+++
T Consensus 53 ~~~l~eki~l~~~~--g--V~v~~GGt-l~E~a~~-----q~~~~~yl~~~k~lGf~~IEiSdGti~--l~~~~r~~~I~ 120 (244)
T PF02679_consen 53 EEILKEKIDLAHSH--G--VYVYPGGT-LFEVAYQ-----QGKFDEYLEECKELGFDAIEISDGTID--LPEEERLRLIR 120 (244)
T ss_dssp CHHHHHHHHHHHCT--T---EEEE-HH-HHHHHHH-----TT-HHHHHHHHHHCT-SEEEE--SSS-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--C--CeEeCCcH-HHHHHHh-----cChHHHHHHHHHHcCCCEEEecCCcee--CCHHHHHHHHH
Confidence 45567777666665 3 55678886 3333332 335577788899999999999743221 23344566677
Q ss_pred HHHccCCcEEEEEeccCCcccccCCCh--------hhhhccCcEEEEee
Q 041898 154 EWRAESQLLLVMTSHHLPALESVSYPL--------DSMQRNLDWIHVLN 194 (355)
Q Consensus 154 ~lr~~~~~~ls~a~~~~~~~~~~~yd~--------~~l~~~vD~v~vm~ 194 (355)
..+ ..++.+-.-+...........+. ..|..=+|+|++-+
T Consensus 121 ~~~-~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 168 (244)
T PF02679_consen 121 KAK-EEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEA 168 (244)
T ss_dssp HHC-CTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--
T ss_pred HHH-HCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 766 33444444444221111111111 33445678888755
No 223
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=20.55 E-value=1.9e+02 Score=28.64 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEE-------cCCc---------chhhhhcCcHHHHHHHHHHHHHHHcCCCCEEEEEccCCC
Q 041898 77 FVIFTNTVKHRNPSVVTLLSI-------WGGA---------IFSSMINQSSNRKSFIKSSVEMARFNGFHGLDLHGVLPD 140 (355)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsi-------GG~~---------~~~~~~~~~~~r~~fi~~i~~~l~~~~~DGIdiDwE~~~ 140 (355)
+..+++.++ .-++|+++.+ ||-. .-.....|++.|..+-+-+-.+++.|+.|=--.-|+...
T Consensus 69 ~~~fla~a~--~l~lkvlitlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~N 146 (587)
T COG3934 69 AAWFLAPAG--YLDLKVLITLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRN 146 (587)
T ss_pred HHHHhhhcc--cCcceEEEEEeecccccCcceeEeecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcC
Confidence 444554344 4489998654 2311 234567788888877777778888888776666676321
Q ss_pred -----CCccHHHHHHHHHHHHc-----cCCcEEEEEeccCCcccccCCChhhhhccCcEEEEeec
Q 041898 141 -----KGTNITKLGTLFDEWRA-----ESQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLNF 195 (355)
Q Consensus 141 -----~~~~~~~~~~~l~~lr~-----~~~~~ls~a~~~~~~~~~~~yd~~~l~~~vD~v~vm~Y 195 (355)
.+...++|...++++.. .++-++++-=+..++.....|+ .-.++||--..-|
T Consensus 147 e~lv~~p~s~N~f~~w~~emy~yiK~ldd~hlvsvGD~~sp~~~~~pyN---~r~~vDya~~hLY 208 (587)
T COG3934 147 EPLVEAPISVNNFWDWSGEMYAYIKWLDDGHLVSVGDPASPWPQYAPYN---ARFYVDYAANHLY 208 (587)
T ss_pred CccccccCChhHHHHHHHHHHHHhhccCCCCeeecCCcCCcccccCCcc---cceeeccccchhh
Confidence 24667889999999998 6777888776666544333343 2336666555555
No 224
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=20.46 E-value=3.8e+02 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCCEEEEEccCC
Q 041898 118 KSSVEMARFNGFHGLDLHGVLP 139 (355)
Q Consensus 118 ~~i~~~l~~~~~DGIdiDwE~~ 139 (355)
+..++.+.++|+|.|.|..+..
T Consensus 104 ~~~~~~L~~~g~~~v~iSldg~ 125 (378)
T PRK05301 104 EARLAALKDAGLDHIQLSFQDS 125 (378)
T ss_pred HHHHHHHHHcCCCEEEEEecCC
Confidence 4567778888999999998864
No 225
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=20.31 E-value=1.4e+02 Score=23.55 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCCEEEEEccCCCCCccHHHHHHHHHHHHc
Q 041898 117 IKSSVEMARFNGFHGLDLHGVLPDKGTNITKLGTLFDEWRA 157 (355)
Q Consensus 117 i~~i~~~l~~~~~DGIdiDwE~~~~~~~~~~~~~~l~~lr~ 157 (355)
.+.+.++|++.|++.--+++++... .+.+.|++.++++-+
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~ 119 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVE 119 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHH
Confidence 4556777888899888888887654 566666655555443
No 226
>PLN02905 beta-amylase
Probab=20.28 E-value=2.4e+02 Score=28.97 Aligned_cols=54 Identities=19% Similarity=0.219 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEccCCC------CCccHHHHHHHHHHHHc-cCCcEEEEEec
Q 041898 114 KSFIKSSVEMARFNGFHGLDLHGVLPD------KGTNITKLGTLFDEWRA-ESQLLLVMTSH 168 (355)
Q Consensus 114 ~~fi~~i~~~l~~~~~DGIdiDwE~~~------~~~~~~~~~~~l~~lr~-~~~~~ls~a~~ 168 (355)
+.|.+++ +.|+..|+|||.+|.-|-. ..-++..|.+|++-+|+ +-+++..++.+
T Consensus 286 ~al~a~L-~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFH 346 (702)
T PLN02905 286 DGLLKQL-RILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFH 346 (702)
T ss_pred HHHHHHH-HHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEec
Confidence 4444444 5568899999999954321 12577889999988887 55555555555
No 227
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=20.22 E-value=3.3e+02 Score=22.44 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcCC-c--chh--------hhhcCcHHHHHHHHHHHHHHHcCCCCEEEE
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIWGG-A--IFS--------SMINQSSNRKSFIKSSVEMARFNGFHGLDL 134 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGG~-~--~~~--------~~~~~~~~r~~fi~~i~~~l~~~~~DGIdi 134 (355)
...+..+++.+++.+|+.+|++.---. . .+. .........+.+.+.+.++.+++++-=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 455777888889888899988763211 1 111 111222344566677777778887666665
No 228
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=20.15 E-value=4.5e+02 Score=21.31 Aligned_cols=49 Identities=16% Similarity=0.131 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhcCcHHHHHHHHHHHHHHHcCC
Q 041898 74 EQFFVIFTNTVKHRNPSVVTLLSIWGGAIFSSMINQSSNRKSFIKSSVEMARFNG 128 (355)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGG~~~~~~~~~~~~~r~~fi~~i~~~l~~~~ 128 (355)
...+..+++.+++++|..++++...=.. ........+++.+.+.+++++
T Consensus 80 ~~~~~~li~~i~~~~p~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 128 (169)
T cd01831 80 TNAYVEFIEELRKRYPDAPIVLMLGPML------FGPYGTEEEIKRVAEAFKDQK 128 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCcc------ccccccHHHHHHHHHHHHhcC
Confidence 3467788889999999998876532111 011111456677777777764
No 229
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=20.09 E-value=1.9e+02 Score=26.87 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCC--CCEEEEEccCCCCCc------cH---HHHHHHHHHHHc
Q 041898 117 IKSSVEMARFNG--FHGLDLHGVLPDKGT------NI---TKLGTLFDEWRA 157 (355)
Q Consensus 117 i~~i~~~l~~~~--~DGIdiDwE~~~~~~------~~---~~~~~~l~~lr~ 157 (355)
+.++++-+++++ +|.|.||+.+-.... |+ .+-..|+++|++
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~ 77 (319)
T cd06591 26 LLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHE 77 (319)
T ss_pred HHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHH
Confidence 566777777774 699999987543211 22 355789999996
No 230
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=20.06 E-value=1.2e+02 Score=20.65 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=9.5
Q ss_pred CchhHHHHHHHHHHHhh
Q 041898 1 MAYKIVTLFLLLTLSLP 17 (355)
Q Consensus 1 M~~~~~~~~l~~~~~~~ 17 (355)
|+.|.+++.+++..+..
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 77776555544444444
Done!