BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041899
(650 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 610 bits (1574), Expect = e-175, Method: Compositional matrix adjust.
Identities = 324/662 (48%), Positives = 442/662 (66%), Gaps = 29/662 (4%)
Query: 4 KERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYL--HEAGYTKHGKVGCTQ 61
K R+ LP++ R++ L+ Q NQ++V VGETGSGKTTQIPQ++ E + ++ +V CTQ
Sbjct: 88 KIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147
Query: 62 PXXXXXXXXXXXXXXEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
P EM VKLG EVGYSIRFE+ TS KT+LKYMTDGM+LRE + D L
Sbjct: 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLS 207
Query: 122 SYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV 181
YS +++DEAHERTL+TDIL+G+ K +V+ R DLK++I SATLDAEKF YFN AP+L V
Sbjct: 208 RYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAV 267
Query: 182 PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQXXXXXXXXXXXXR- 240
PGR YPVE++YT + +Y+D+AI T L+IHAT+ +GDIL+FLTG+
Sbjct: 268 PGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG 327
Query: 241 ---IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-----ARKVVLATNIAETSLTI 292
+R+ G G L V P+Y +LP Q +IF P P+ RKVV++TNIAETSLTI
Sbjct: 328 DQLVREEGC--GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 293 DGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352
DGI YVVD G+SK K YNP+ +ESLLV PISKASA QRAGR+GRT PGKCFRLYT ++
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 353 QEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQXXXXXXXXXXXXXGALN 412
Q+++ + + PEI R+NL++ +L LK LGIDDL++FDF+D P L+
Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505
Query: 413 QVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL 472
G LT +GR ++FPLDPML+ M++ S +F+CS EI+TI A+LSV N VF RP K
Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKR 564
Query: 473 ADNARMNFYQGDAGDHIALLNVYNSWKENDYSK----QWCYDNFIQFRSMKHARDIRDQL 528
AD+A+ F D GDHI LLNVY+++K ++ + +WC D+++ +RS+ A +IR QL
Sbjct: 565 ADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQL 623
Query: 529 TCLVERVGIELTS----SLCNLEAMKKAIISGFLLHTARLQKNGS--YWTVKHPQKVHVH 582
L+ R +EL + S + ++KA+ SGF + A+ +++G+ Y TVK Q V +H
Sbjct: 624 ERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDVLIH 682
Query: 583 PSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVE--DLRKKMP 640
PS+ L WVIY+E VLT+K Y+R VT ++PEWL EIAP YY L + + D++ +
Sbjct: 683 PSTVLGH-DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLE 741
Query: 641 RV 642
R+
Sbjct: 742 RI 743
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 610 bits (1574), Expect = e-175, Method: Compositional matrix adjust.
Identities = 324/662 (48%), Positives = 442/662 (66%), Gaps = 29/662 (4%)
Query: 4 KERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYL--HEAGYTKHGKVGCTQ 61
K R+ LP++ R++ L+ Q NQ++V VGETGSGKTTQIPQ++ E + ++ +V CTQ
Sbjct: 88 KIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147
Query: 62 PXXXXXXXXXXXXXXEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLE 121
P EM VKLG EVGYSIRFE+ TS KT+LKYMTDGM+LRE + D L
Sbjct: 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLS 207
Query: 122 SYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV 181
YS +++DEAHERTL+TDIL+G+ K +V+ R DLK++I SATLDAEKF YFN AP+L V
Sbjct: 208 RYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAV 267
Query: 182 PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQXXXXXXXXXXXXR- 240
PGR YPVE++YT + +Y+D+AI T L+IHAT+ +GDIL+FLTG+
Sbjct: 268 PGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG 327
Query: 241 ---IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-----ARKVVLATNIAETSLTI 292
+R+ G G L V P+Y +LP Q +IF P P+ RKVV++TNIAETSLTI
Sbjct: 328 DQLVREEGC--GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTI 385
Query: 293 DGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352
DGI YVVD G+SK K YNP+ +ESLLV PISKASA QRAGR+GRT PGKCFRLYT ++
Sbjct: 386 DGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 445
Query: 353 QEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQXXXXXXXXXXXXXGALN 412
Q+++ + + PEI R+NL++ +L LK LGIDDL++FDF+D P L+
Sbjct: 446 QKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLD 505
Query: 413 QVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL 472
G LT +GR ++FPLDPML+ M++ S +F+CS EI+TI A+LSV N VF RP K
Sbjct: 506 DEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPN-VFIRPTKDKKR 564
Query: 473 ADNARMNFYQGDAGDHIALLNVYNSWKENDYSK----QWCYDNFIQFRSMKHARDIRDQL 528
AD+A+ F D GDHI LLNVY+++K ++ + +WC D+++ +RS+ A +IR QL
Sbjct: 565 ADDAKNIFAHPD-GDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQL 623
Query: 529 TCLVERVGIELTS----SLCNLEAMKKAIISGFLLHTARLQKNGS--YWTVKHPQKVHVH 582
L+ R +EL + S + ++KA+ SGF + A+ +++G+ Y TVK Q V +H
Sbjct: 624 ERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAK-KRSGAKGYITVKDNQDVLIH 682
Query: 583 PSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVE--DLRKKMP 640
PS+ L WVIY+E VLT+K Y+R VT ++PEWL EIAP YY L + + D++ +
Sbjct: 683 PSTVLGH-DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLE 741
Query: 641 RV 642
R+
Sbjct: 742 RI 743
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 155/225 (68%), Gaps = 2/225 (0%)
Query: 409 GALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKN 468
GAL+ G LT++GR+MAEFPL+PML KM++ S CS E++TI ++LSV N VFYRPK+
Sbjct: 31 GALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN-VFYRPKD 89
Query: 469 KKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQL 528
K+ LAD + F+Q + GDH+ LL VYNSWK N +S WCY+NFIQ RS++ A+DIR Q+
Sbjct: 90 KQALADQKKAKFHQTE-GDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM 148
Query: 529 TCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLA 588
+++R +++ S + ++KAI SGF + A+ Y T+ Q V++HPSS L
Sbjct: 149 LGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALF 208
Query: 589 QVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVE 633
WV+YHELVLTTKEYMR+VT + P WL E AP ++ + +V+
Sbjct: 209 NRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVD 253
>pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase
pdb|3LLM|B Chain B, Crystal Structure Analysis Of A Rna Helicase
Length = 235
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 99/183 (54%), Gaps = 7/183 (3%)
Query: 4 KERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC---- 59
+ER+ LP+ + ++L A+ +N VV+I G TG GKTTQ+PQ++ + C
Sbjct: 55 QERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVV 114
Query: 60 TQPXXXXXXXXXXXXXXEMGVKLGHEVGYSIRFEDCTSE-KTVLKYMTDGMVLREMLSDP 118
TQP E G + G GYS+RFE + + T G++LR++ +
Sbjct: 115 TQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIXFCTVGVLLRKL--EA 172
Query: 119 KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPI 178
+ S ++VDE HER ++TD LL + +D+V+ ++++++ SAT+D F YF PI
Sbjct: 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLXSATIDTSXFCEYFFNCPI 232
Query: 179 LRV 181
+ V
Sbjct: 233 IEV 235
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 20 RAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK 53
RAVQ +V+V+ GETGSGKTT + + E + +
Sbjct: 170 RAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQ 203
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 19 LRAVQENQVVVIVGETGSGKT---TQIPQYL 46
+R QENQ V+I GE+G+GKT +I Q+L
Sbjct: 88 MRQSQENQCVIISGESGAGKTEASKKIMQFL 118
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 19 LRAVQENQVVVIVGETGSGKT---TQIPQYL 46
+R QENQ V+I GE+G+GKT +I Q+L
Sbjct: 88 MRQSQENQCVIISGESGAGKTEASKKIMQFL 118
>pdb|4B3F|X Chain X, Crystal Structure Of 1ghmbp2 Helicase
Length = 646
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 15 REQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHG-KVGCTQP 62
+E VL A+ + ++ +I G G+GKTT + + + +A K G KV C P
Sbjct: 195 KEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVLCCAP 241
>pdb|4B3G|A Chain A, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
pdb|4B3G|B Chain B, Crystal Structure Of Ighmbp2 Helicase In Complex With Rna
Length = 646
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 15 REQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHG-KVGCTQP 62
+E VL A+ + ++ +I G G+GKTT + + + +A K G KV C P
Sbjct: 195 KEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA--VKQGLKVLCCAP 241
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 563 RLQKNGSYWTVKHPQKV--HVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLF 620
R N Y T K + + V +SG W+ +++++TT E + + +PEWL
Sbjct: 85 RALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLN 144
Query: 621 EIAPHYYMLKDV 632
E+ +Y++L ++
Sbjct: 145 EV--NYFVLDEL 154
>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
pdb|1YJ5|B Chain B, Molecular Architecture Of Mammalian Polynucleotide Kinase,
A Dna Repair Enzyme
Length = 383
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 26 QVVVIVGETGSGKTTQIPQYLHEAGY 51
+VVV VG G+GK+T I ++L AGY
Sbjct: 226 EVVVAVGFPGAGKSTFIQEHLVSAGY 251
>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctap)
Length = 379
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 26 QVVVIVGETGSGKTTQIPQYLHEAGY 51
+VVV VG G+GK+T I ++L AGY
Sbjct: 222 EVVVAVGFPGAGKSTFIQEHLVSAGY 247
>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
pdb|3U7F|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tcctcp)
pdb|3U7H|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a)
Bound To Single- Stranded Dna (Tccttp)
Length = 381
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 26 QVVVIVGETGSGKTTQIPQYLHEAGY 51
+VVV VG G+GK+T I ++L AGY
Sbjct: 224 EVVVAVGFPGAGKSTFIQEHLVSAGY 249
>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
pdb|3ZVM|B Chain B, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 26 QVVVIVGETGSGKTTQIPQYLHEAGY 51
+VVV VG G+GK+T I ++L AGY
Sbjct: 259 EVVVAVGFPGAGKSTFIQEHLVSAGY 284
>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 26 QVVVIVGETGSGKTTQIPQYLHEAGY 51
+VVV VG G+GK+T I ++L AGY
Sbjct: 259 EVVVAVGFPGAGKSTFIQEHLVSAGY 284
>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By
Mammalian Polynucleotide Kinase 3' Phosphatase
Length = 416
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 26 QVVVIVGETGSGKTTQIPQYLHEAGY 51
+VVV VG G+GK+T I ++L AGY
Sbjct: 259 EVVVAVGFPGAGKSTFIQEHLVSAGY 284
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase
At 2.1 Angstroms Resolution
Length = 195
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYT 52
+++++++ +VG GSGK TQ + + + GYT
Sbjct: 6 LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYT 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,905,064
Number of Sequences: 62578
Number of extensions: 693247
Number of successful extensions: 2084
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2047
Number of HSP's gapped (non-prelim): 29
length of query: 650
length of database: 14,973,337
effective HSP length: 105
effective length of query: 545
effective length of database: 8,402,647
effective search space: 4579442615
effective search space used: 4579442615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)