Query 041899
Match_columns 650
No_of_seqs 546 out of 2863
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 11:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041899.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041899hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0923 mRNA splicing factor A 100.0 1E-148 3E-153 1147.7 52.1 643 2-645 257-901 (902)
2 KOG0922 DEAH-box RNA helicase 100.0 3E-146 7E-151 1145.9 56.5 626 1-631 42-670 (674)
3 KOG0924 mRNA splicing factor A 100.0 2E-143 4E-148 1110.1 48.6 638 2-642 348-987 (1042)
4 KOG0925 mRNA splicing factor A 100.0 6E-137 1E-141 1028.6 48.2 629 2-638 39-677 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 2E-120 4E-125 1042.3 61.7 628 4-644 68-713 (1294)
6 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4E-117 8E-122 1019.0 61.6 630 4-646 61-706 (1283)
7 COG1643 HrpA HrpA-like helicas 100.0 2E-113 3E-118 953.8 50.6 618 2-625 42-708 (845)
8 KOG0926 DEAH-box RNA helicase 100.0 3E-111 7E-116 883.9 43.4 629 1-632 247-1027(1172)
9 KOG0920 ATP-dependent RNA heli 100.0 1E-110 2E-115 924.9 46.2 624 1-628 164-849 (924)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.5E-96 3E-101 832.7 57.0 591 9-648 1-598 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 2.5E-96 5E-101 833.3 57.1 583 8-648 3-591 (812)
12 KOG0921 Dosage compensation co 100.0 7.9E-65 1.7E-69 539.1 22.6 620 2-628 370-1073(1282)
13 PHA02653 RNA helicase NPH-II; 100.0 9E-59 1.9E-63 513.5 35.5 391 13-442 167-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 4.6E-44 1E-48 408.1 42.9 432 8-456 20-507 (674)
15 PRK02362 ski2-like helicase; P 100.0 8.2E-44 1.8E-48 408.7 41.7 445 7-467 20-542 (737)
16 PRK00254 ski2-like helicase; P 100.0 6.8E-41 1.5E-45 383.6 40.1 442 6-466 19-533 (720)
17 COG1202 Superfamily II helicas 100.0 5.6E-40 1.2E-44 336.6 23.8 433 2-466 208-688 (830)
18 PRK11776 ATP-dependent RNA hel 100.0 7.2E-39 1.6E-43 350.4 29.3 311 10-352 26-351 (460)
19 KOG0330 ATP-dependent RNA heli 100.0 1.5E-39 3.3E-44 320.0 19.8 307 11-350 84-407 (476)
20 COG1204 Superfamily II helicas 100.0 5E-38 1.1E-42 352.9 34.3 415 10-442 31-526 (766)
21 PTZ00110 helicase; Provisional 100.0 2.6E-38 5.6E-43 349.7 29.0 312 10-352 152-486 (545)
22 PRK04837 ATP-dependent RNA hel 100.0 4.4E-38 9.5E-43 340.5 26.0 308 10-351 30-363 (423)
23 KOG0331 ATP-dependent RNA heli 100.0 5.2E-38 1.1E-42 329.8 25.5 316 8-353 111-451 (519)
24 PRK10590 ATP-dependent RNA hel 100.0 8.4E-38 1.8E-42 340.6 27.4 311 9-352 22-354 (456)
25 PRK11192 ATP-dependent RNA hel 100.0 2.4E-37 5.3E-42 336.3 29.1 314 7-352 20-354 (434)
26 PLN00206 DEAD-box ATP-dependen 100.0 1.5E-37 3.2E-42 342.7 27.7 310 10-352 143-477 (518)
27 PRK11634 ATP-dependent RNA hel 100.0 4.4E-37 9.4E-42 342.8 30.4 313 7-351 25-353 (629)
28 PTZ00424 helicase 45; Provisio 100.0 1.8E-37 3.8E-42 334.7 26.2 311 10-352 50-376 (401)
29 PRK01297 ATP-dependent RNA hel 100.0 5.4E-37 1.2E-41 336.5 30.4 309 9-351 108-443 (475)
30 PRK04537 ATP-dependent RNA hel 100.0 2.3E-37 4.9E-42 343.3 27.3 309 10-351 31-365 (572)
31 TIGR03817 DECH_helic helicase/ 100.0 1.7E-36 3.7E-41 344.5 29.8 321 6-349 32-385 (742)
32 TIGR00614 recQ_fam ATP-depende 100.0 3E-36 6.5E-41 329.4 29.2 304 10-352 11-335 (470)
33 COG0513 SrmB Superfamily II DN 100.0 4E-36 8.7E-41 329.1 26.0 310 9-350 50-380 (513)
34 PLN03137 ATP-dependent DNA hel 100.0 5E-36 1.1E-40 338.0 25.8 306 10-352 460-789 (1195)
35 PRK11057 ATP-dependent DNA hel 100.0 1.4E-35 3E-40 332.4 26.3 304 10-352 25-345 (607)
36 KOG0952 DNA/RNA helicase MER3/ 100.0 1.7E-34 3.7E-39 314.6 28.0 474 11-497 111-683 (1230)
37 PRK13767 ATP-dependent helicas 100.0 1.5E-34 3.2E-39 335.1 27.7 313 11-346 33-396 (876)
38 TIGR01389 recQ ATP-dependent D 100.0 1.1E-34 2.5E-39 326.1 24.6 303 10-352 13-333 (591)
39 KOG0342 ATP-dependent RNA heli 100.0 9.4E-34 2E-38 287.5 25.8 311 10-351 104-438 (543)
40 KOG0345 ATP-dependent RNA heli 100.0 1.9E-34 4.2E-39 290.3 18.7 329 11-369 29-385 (567)
41 KOG0333 U5 snRNP-like RNA heli 100.0 1.1E-33 2.3E-38 288.1 20.6 308 11-351 268-625 (673)
42 KOG0343 RNA Helicase [RNA proc 100.0 1.2E-33 2.5E-38 289.0 20.3 312 10-351 91-423 (758)
43 COG1111 MPH1 ERCC4-like helica 100.0 7.2E-33 1.6E-37 283.4 25.4 317 8-351 13-482 (542)
44 KOG0328 Predicted ATP-dependen 100.0 3.4E-33 7.3E-38 264.0 19.7 310 11-352 50-375 (400)
45 KOG0338 ATP-dependent RNA heli 100.0 1.1E-33 2.4E-38 286.8 17.1 311 11-351 204-534 (691)
46 KOG0340 ATP-dependent RNA heli 100.0 5.9E-33 1.3E-37 270.6 20.3 309 11-351 30-362 (442)
47 TIGR00580 mfd transcription-re 100.0 4.5E-32 9.7E-37 311.1 29.8 301 8-350 449-770 (926)
48 COG1201 Lhr Lhr-like helicases 100.0 4.4E-32 9.5E-37 300.7 26.4 367 8-407 20-438 (814)
49 PRK09751 putative ATP-dependen 100.0 7.2E-32 1.6E-36 316.9 29.1 291 30-342 1-375 (1490)
50 KOG0348 ATP-dependent RNA heli 100.0 3.3E-32 7.1E-37 277.7 21.7 328 10-356 159-562 (708)
51 PRK10917 ATP-dependent DNA hel 100.0 2E-31 4.3E-36 302.1 29.0 300 8-348 259-587 (681)
52 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-31 3.2E-36 298.1 26.5 343 9-387 14-428 (844)
53 TIGR00643 recG ATP-dependent D 100.0 1.3E-31 2.8E-36 301.7 26.4 301 10-348 235-564 (630)
54 COG0514 RecQ Superfamily II DN 100.0 9.4E-32 2E-36 288.0 22.8 304 12-352 19-339 (590)
55 KOG0335 ATP-dependent RNA heli 100.0 5.2E-32 1.1E-36 279.8 17.7 311 11-349 97-443 (482)
56 PRK10689 transcription-repair 100.0 2.2E-31 4.7E-36 311.8 24.9 300 9-350 599-919 (1147)
57 KOG0326 ATP-dependent RNA heli 100.0 3.2E-32 6.9E-37 261.5 14.0 308 12-352 109-431 (459)
58 KOG0336 ATP-dependent RNA heli 100.0 4.5E-32 9.7E-37 268.1 15.2 312 11-353 243-575 (629)
59 TIGR01587 cas3_core CRISPR-ass 100.0 4.9E-31 1.1E-35 280.0 24.3 292 27-351 1-337 (358)
60 KOG0332 ATP-dependent RNA heli 100.0 8.7E-31 1.9E-35 256.9 18.8 314 12-351 114-444 (477)
61 KOG0354 DEAD-box like helicase 100.0 4E-30 8.7E-35 278.3 25.8 318 7-350 59-529 (746)
62 TIGR03158 cas3_cyano CRISPR-as 100.0 1.1E-29 2.4E-34 267.1 27.4 285 14-336 1-357 (357)
63 KOG0951 RNA helicase BRR2, DEA 100.0 5.5E-30 1.2E-34 282.5 24.3 429 11-448 310-837 (1674)
64 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-30 6.2E-35 261.9 18.8 315 7-352 156-542 (620)
65 KOG0339 ATP-dependent RNA heli 100.0 3.9E-30 8.5E-35 260.7 19.5 310 11-352 246-577 (731)
66 KOG0346 RNA helicase [RNA proc 100.0 7.5E-30 1.6E-34 255.0 20.1 309 11-351 42-411 (569)
67 PHA02558 uvsW UvsW helicase; P 100.0 4.5E-29 9.7E-34 274.3 27.3 296 9-342 113-443 (501)
68 COG1205 Distinct helicase fami 100.0 3.5E-29 7.7E-34 285.5 23.9 321 5-348 65-420 (851)
69 KOG0948 Nuclear exosomal RNA h 100.0 7.4E-30 1.6E-34 269.0 14.0 319 9-350 128-539 (1041)
70 KOG0947 Cytoplasmic exosomal R 100.0 8.4E-29 1.8E-33 267.2 20.3 320 8-350 295-723 (1248)
71 KOG0341 DEAD-box protein abstr 100.0 4.9E-30 1.1E-34 252.1 8.3 315 6-351 188-529 (610)
72 PRK13766 Hef nuclease; Provisi 100.0 1.3E-27 2.8E-32 278.1 30.0 318 7-353 12-482 (773)
73 KOG0347 RNA helicase [RNA proc 100.0 4.9E-29 1.1E-33 255.3 14.7 311 11-351 204-571 (731)
74 COG4581 Superfamily II RNA hel 100.0 1E-27 2.3E-32 269.4 23.8 325 7-350 116-537 (1041)
75 KOG0344 ATP-dependent RNA heli 100.0 1E-27 2.3E-32 249.3 16.7 309 13-352 161-497 (593)
76 KOG0352 ATP-dependent DNA heli 99.9 2.1E-27 4.5E-32 236.5 16.3 305 13-352 23-364 (641)
77 TIGR00603 rad25 DNA repair hel 99.9 3.1E-26 6.6E-31 253.4 27.2 303 7-353 252-610 (732)
78 KOG4284 DEAD box protein [Tran 99.9 1.3E-27 2.9E-32 248.4 15.4 312 12-351 49-380 (980)
79 KOG0334 RNA helicase [RNA proc 99.9 1.2E-26 2.7E-31 255.9 18.6 309 10-350 387-720 (997)
80 PRK09401 reverse gyrase; Revie 99.9 4.7E-26 1E-30 267.6 22.6 273 8-306 78-411 (1176)
81 KOG0327 Translation initiation 99.9 3E-26 6.5E-31 227.3 17.0 306 12-352 50-372 (397)
82 KOG0351 ATP-dependent DNA heli 99.9 3.5E-26 7.6E-31 259.0 19.7 306 11-353 265-595 (941)
83 PRK05580 primosome assembly pr 99.9 3.6E-25 7.8E-30 250.1 23.7 315 8-345 142-544 (679)
84 PRK09694 helicase Cas3; Provis 99.9 1.2E-24 2.6E-29 247.5 27.4 301 9-340 285-664 (878)
85 COG4098 comFA Superfamily II D 99.9 1.2E-24 2.6E-29 212.0 23.3 297 11-346 98-412 (441)
86 COG1061 SSL2 DNA or RNA helica 99.9 1.1E-24 2.4E-29 234.9 25.1 292 7-340 33-378 (442)
87 TIGR00595 priA primosomal prot 99.9 3.8E-25 8.2E-30 241.3 18.6 294 29-345 1-376 (505)
88 TIGR03714 secA2 accessory Sec 99.9 6.2E-24 1.3E-28 235.1 27.9 312 5-352 63-539 (762)
89 COG1200 RecG RecG-like helicas 99.9 1.4E-24 3E-29 232.1 21.1 303 8-351 260-592 (677)
90 PRK14701 reverse gyrase; Provi 99.9 7.5E-25 1.6E-29 262.6 19.9 307 9-345 78-451 (1638)
91 KOG0950 DNA polymerase theta/e 99.9 1.2E-24 2.6E-29 237.3 19.0 329 6-351 219-612 (1008)
92 KOG0337 ATP-dependent RNA heli 99.9 3.3E-25 7.1E-30 221.0 12.5 307 12-351 45-369 (529)
93 PRK11448 hsdR type I restricti 99.9 3.6E-23 7.8E-28 242.0 29.5 315 9-348 412-813 (1123)
94 PRK12898 secA preprotein trans 99.9 1.5E-23 3.2E-28 229.6 24.1 106 217-351 473-587 (656)
95 TIGR01054 rgy reverse gyrase. 99.9 2.3E-23 4.9E-28 245.4 24.1 276 7-308 75-412 (1171)
96 KOG0353 ATP-dependent DNA heli 99.9 4.2E-23 9.1E-28 202.8 20.5 297 11-349 95-466 (695)
97 TIGR00963 secA preprotein tran 99.9 7.7E-23 1.7E-27 225.0 23.2 119 203-352 393-519 (745)
98 COG1197 Mfd Transcription-repa 99.9 1.5E-22 3.4E-27 227.9 25.9 299 11-351 595-914 (1139)
99 PRK09200 preprotein translocas 99.9 6.4E-23 1.4E-27 229.3 22.0 108 216-352 427-543 (790)
100 PRK04914 ATP-dependent helicas 99.9 6.3E-20 1.4E-24 210.4 25.6 302 9-340 151-592 (956)
101 KOG0949 Predicted helicase, DE 99.9 2.1E-20 4.5E-25 203.1 19.6 163 9-174 510-682 (1330)
102 COG1203 CRISPR-associated heli 99.8 6.5E-20 1.4E-24 209.4 20.8 305 10-346 195-546 (733)
103 PF07717 OB_NTP_bind: Oligonuc 99.8 2.7E-20 5.8E-25 163.2 8.0 101 526-626 1-114 (114)
104 PRK12906 secA preprotein trans 99.8 6.8E-19 1.5E-23 195.7 19.5 107 216-351 439-554 (796)
105 PRK13104 secA preprotein trans 99.8 1.5E-18 3.1E-23 194.0 22.1 331 5-351 75-588 (896)
106 PRK12904 preprotein translocas 99.8 8.8E-18 1.9E-22 187.7 22.0 125 216-351 429-574 (830)
107 COG1198 PriA Primosomal protei 99.8 6.6E-18 1.4E-22 187.1 19.4 316 8-345 196-598 (730)
108 KOG0921 Dosage compensation co 99.8 1.7E-20 3.7E-25 201.8 -1.1 437 3-453 399-886 (1282)
109 KOG0329 ATP-dependent RNA heli 99.8 3.2E-18 6.9E-23 160.5 11.7 275 11-351 65-356 (387)
110 PF00270 DEAD: DEAD/DEAH box h 99.8 1.5E-17 3.2E-22 156.8 15.0 156 12-170 1-167 (169)
111 KOG0953 Mitochondrial RNA heli 99.8 2.5E-17 5.5E-22 170.2 17.4 275 24-350 190-477 (700)
112 COG4096 HsdR Type I site-speci 99.7 2.6E-16 5.7E-21 171.0 24.3 338 9-381 164-578 (875)
113 TIGR00348 hsdR type I site-spe 99.7 1.9E-16 4.2E-21 179.3 23.3 299 12-342 240-639 (667)
114 KOG0349 Putative DEAD-box RNA 99.7 1.4E-17 3E-22 166.8 10.9 269 54-347 286-612 (725)
115 PF04408 HA2: Helicase associa 99.7 1E-17 2.3E-22 142.9 8.7 92 400-492 1-102 (102)
116 TIGR00631 uvrb excinuclease AB 99.7 1.3E-15 2.9E-20 170.4 26.4 114 216-351 441-554 (655)
117 PRK13107 preprotein translocas 99.7 3.6E-16 7.8E-21 174.4 20.8 135 203-351 437-592 (908)
118 cd00268 DEADc DEAD-box helicas 99.7 3.6E-16 7.8E-21 152.2 16.1 154 10-165 21-185 (203)
119 PRK12899 secA preprotein trans 99.7 7.1E-15 1.5E-19 164.4 24.1 120 11-132 93-225 (970)
120 COG1110 Reverse gyrase [DNA re 99.7 1.1E-14 2.5E-19 160.7 24.1 275 7-307 79-419 (1187)
121 smart00847 HA2 Helicase associ 99.6 7.1E-16 1.5E-20 129.5 8.4 91 400-492 1-92 (92)
122 TIGR01407 dinG_rel DnaQ family 99.6 6.3E-14 1.4E-18 163.8 25.7 183 155-346 596-811 (850)
123 PLN03142 Probable chromatin-re 99.6 5.2E-14 1.1E-18 162.6 24.4 310 10-354 169-603 (1033)
124 KOG4150 Predicted ATP-dependen 99.6 2.9E-15 6.3E-20 154.8 11.7 310 9-339 285-628 (1034)
125 KOG1123 RNA polymerase II tran 99.6 1.3E-14 2.7E-19 148.4 13.4 301 10-352 302-655 (776)
126 smart00487 DEXDc DEAD-like hel 99.5 2E-13 4.3E-18 131.6 16.8 164 7-173 5-181 (201)
127 PF07652 Flavi_DEAD: Flaviviru 99.5 2.8E-14 6E-19 125.5 9.5 133 24-165 3-137 (148)
128 TIGR02562 cas3_yersinia CRISPR 99.5 8.5E-13 1.8E-17 148.9 23.7 310 4-340 402-881 (1110)
129 cd00046 DEXDc DEAD-like helica 99.5 1.6E-13 3.4E-18 124.4 14.6 136 26-164 1-144 (144)
130 COG0556 UvrB Helicase subunit 99.5 2.6E-12 5.7E-17 133.3 23.6 167 154-347 386-554 (663)
131 cd00079 HELICc Helicase superf 99.5 7.4E-14 1.6E-18 125.4 10.5 103 216-345 27-130 (131)
132 PRK12326 preprotein translocas 99.5 1.2E-12 2.7E-17 143.1 21.3 122 7-132 73-208 (764)
133 PRK05298 excinuclease ABC subu 99.5 2.1E-13 4.5E-18 154.1 14.9 112 216-349 445-556 (652)
134 PRK07246 bifunctional ATP-depe 99.5 1.6E-11 3.5E-16 141.8 28.1 133 199-346 631-780 (820)
135 PF04851 ResIII: Type III rest 99.5 5.2E-13 1.1E-17 127.4 12.1 146 9-165 2-183 (184)
136 PRK13103 secA preprotein trans 99.5 2.2E-12 4.8E-17 144.6 18.6 125 6-132 76-212 (913)
137 KOG0951 RNA helicase BRR2, DEA 99.4 5.1E-12 1.1E-16 141.7 20.7 314 15-348 1148-1492(1674)
138 PF00271 Helicase_C: Helicase 99.4 6.4E-14 1.4E-18 113.7 3.7 72 250-339 7-78 (78)
139 PRK12900 secA preprotein trans 99.4 8.1E-13 1.8E-17 148.5 11.0 163 156-352 535-713 (1025)
140 PRK12903 secA preprotein trans 99.3 7.6E-11 1.6E-15 131.0 22.0 118 202-351 413-540 (925)
141 PRK14873 primosome assembly pr 99.3 4.7E-11 1E-15 133.8 16.9 136 28-172 163-311 (665)
142 smart00490 HELICc helicase sup 99.3 4.8E-12 1E-16 103.4 5.3 72 250-339 11-82 (82)
143 CHL00122 secA preprotein trans 99.3 2.4E-10 5.2E-15 127.9 19.6 125 6-132 70-206 (870)
144 PRK08074 bifunctional ATP-depe 99.3 3.1E-09 6.6E-14 125.3 29.5 140 199-346 735-890 (928)
145 PF02399 Herpes_ori_bp: Origin 99.2 1.1E-09 2.3E-14 121.4 23.2 294 23-352 47-390 (824)
146 COG4889 Predicted helicase [Ge 99.2 6.7E-11 1.5E-15 128.4 10.5 313 10-344 161-578 (1518)
147 PRK12902 secA preprotein trans 99.1 2.5E-09 5.5E-14 119.6 20.4 125 6-132 79-215 (939)
148 TIGR03117 cas_csf4 CRISPR-asso 99.1 5.7E-08 1.2E-12 107.8 29.8 135 200-347 454-614 (636)
149 KOG0385 Chromatin remodeling c 99.1 4.3E-09 9.2E-14 113.8 19.8 312 10-353 167-602 (971)
150 KOG0390 DNA repair protein, SN 99.0 2.5E-08 5.4E-13 111.0 23.0 86 250-353 619-710 (776)
151 KOG0387 Transcription-coupled 99.0 4.3E-08 9.3E-13 106.7 22.8 310 11-353 206-661 (923)
152 KOG0384 Chromodomain-helicase 98.9 3.7E-08 8E-13 111.7 17.2 317 7-356 367-817 (1373)
153 COG1199 DinG Rad3-related DNA 98.9 5.6E-07 1.2E-11 103.4 25.7 136 199-346 462-614 (654)
154 KOG1000 Chromatin remodeling p 98.7 1.6E-06 3.4E-11 89.9 20.7 268 11-300 199-568 (689)
155 COG0610 Type I site-specific r 98.5 3.4E-06 7.3E-11 99.3 19.3 131 26-164 274-413 (962)
156 KOG0392 SNF2 family DNA-depend 98.4 5.6E-06 1.2E-10 94.2 17.3 112 218-353 1341-1457(1549)
157 PF00176 SNF2_N: SNF2 family N 98.4 2E-06 4.3E-11 88.8 11.5 130 24-164 24-172 (299)
158 PRK12901 secA preprotein trans 98.4 2.4E-06 5.1E-11 97.3 11.9 162 156-351 565-742 (1112)
159 PF13604 AAA_30: AAA domain; P 98.3 2E-06 4.4E-11 82.7 8.3 123 11-164 2-131 (196)
160 KOG0952 DNA/RNA helicase MER3/ 98.3 7.1E-07 1.5E-11 100.1 5.3 214 25-239 943-1175(1230)
161 COG0653 SecA Preprotein transl 98.3 1.2E-05 2.6E-10 90.3 14.6 125 6-132 74-210 (822)
162 KOG0389 SNF2 family DNA-depend 98.2 2.3E-05 5.1E-10 85.8 15.1 114 217-354 777-892 (941)
163 KOG1002 Nucleotide excision re 98.2 6.5E-05 1.4E-09 78.2 17.1 86 249-352 661-751 (791)
164 PF13245 AAA_19: Part of AAA d 98.2 4.5E-06 9.7E-11 66.7 6.5 54 21-74 6-62 (76)
165 PF00448 SRP54: SRP54-type pro 98.2 1.2E-05 2.5E-10 77.2 10.5 127 26-170 2-131 (196)
166 PF13401 AAA_22: AAA domain; P 98.2 1.8E-06 3.8E-11 77.4 4.4 115 23-163 2-125 (131)
167 TIGR02768 TraA_Ti Ti-type conj 98.1 0.00057 1.2E-08 79.0 23.4 123 8-161 350-474 (744)
168 PRK10536 hypothetical protein; 98.0 3E-05 6.6E-10 76.3 9.9 58 8-65 57-115 (262)
169 PF02562 PhoH: PhoH-like prote 98.0 8E-06 1.7E-10 78.1 5.8 58 9-66 3-61 (205)
170 TIGR01447 recD exodeoxyribonuc 98.0 5.2E-05 1.1E-09 84.7 12.5 136 13-162 148-294 (586)
171 PRK13889 conjugal transfer rel 98.0 0.00062 1.3E-08 79.9 21.3 126 7-163 343-470 (988)
172 KOG1803 DNA helicase [Replicat 98.0 1.5E-05 3.4E-10 85.2 7.1 64 11-75 186-250 (649)
173 TIGR01448 recD_rel helicase, p 97.9 8.4E-05 1.8E-09 85.5 13.4 125 7-163 320-452 (720)
174 PRK12723 flagellar biosynthesi 97.9 0.00014 3E-09 76.9 13.7 127 25-174 174-307 (388)
175 PRK10875 recD exonuclease V su 97.9 6.5E-05 1.4E-09 84.1 11.7 138 12-163 154-301 (615)
176 COG1419 FlhF Flagellar GTP-bin 97.9 0.00019 4.2E-09 74.6 13.5 127 25-174 203-333 (407)
177 PF06862 DUF1253: Protein of u 97.9 0.0012 2.6E-08 70.3 19.8 230 99-352 131-417 (442)
178 PF13086 AAA_11: AAA domain; P 97.9 3.2E-05 7E-10 76.5 7.5 66 11-76 2-75 (236)
179 PRK11889 flhF flagellar biosyn 97.9 0.00023 5E-09 74.2 13.7 122 26-168 242-366 (436)
180 PF09848 DUF2075: Uncharacteri 97.8 6.5E-05 1.4E-09 79.5 9.6 90 26-132 2-93 (352)
181 PRK13826 Dtr system oriT relax 97.8 0.0027 5.8E-08 75.1 23.1 125 8-163 379-505 (1102)
182 PRK14722 flhF flagellar biosyn 97.8 0.0002 4.3E-09 75.1 11.8 124 24-170 136-263 (374)
183 cd00009 AAA The AAA+ (ATPases 97.7 0.00049 1.1E-08 62.2 12.4 49 15-64 7-57 (151)
184 PF13872 AAA_34: P-loop contai 97.7 0.0005 1.1E-08 68.9 12.9 139 25-164 62-220 (303)
185 PRK14974 cell division protein 97.6 0.00043 9.3E-09 71.8 11.8 121 26-165 141-265 (336)
186 PRK12726 flagellar biosynthesi 97.6 0.00054 1.2E-08 71.2 11.8 129 24-173 205-336 (407)
187 PRK05703 flhF flagellar biosyn 97.6 0.00093 2E-08 72.0 14.1 126 24-172 220-350 (424)
188 PF05970 PIF1: PIF1-like helic 97.6 0.0003 6.6E-09 74.6 10.1 115 11-146 2-124 (364)
189 PRK15483 type III restriction- 97.6 0.00045 9.7E-09 79.8 11.7 136 26-166 60-240 (986)
190 TIGR02760 TraI_TIGR conjugativ 97.6 0.0064 1.4E-07 77.2 22.8 247 8-275 427-685 (1960)
191 PRK08181 transposase; Validate 97.6 0.00079 1.7E-08 67.8 12.2 115 21-175 102-219 (269)
192 PRK06526 transposase; Provisio 97.5 0.00019 4.1E-09 71.8 7.2 38 22-60 95-132 (254)
193 KOG0386 Chromatin remodeling c 97.5 0.0001 2.2E-09 83.0 5.7 112 216-354 725-842 (1157)
194 PRK11747 dinG ATP-dependent DN 97.5 0.0012 2.6E-08 76.0 13.4 134 199-346 518-671 (697)
195 PRK04296 thymidine kinase; Pro 97.5 0.00031 6.8E-09 67.3 7.4 37 25-62 2-38 (190)
196 TIGR00596 rad1 DNA repair prot 97.4 0.0014 3E-08 75.6 13.3 66 99-165 7-73 (814)
197 PRK12724 flagellar biosynthesi 97.4 0.002 4.3E-08 68.2 13.3 123 25-171 223-351 (432)
198 smart00489 DEXDc3 DEAD-like he 97.4 0.00044 9.5E-09 70.8 8.1 68 8-75 6-82 (289)
199 smart00488 DEXDc2 DEAD-like he 97.4 0.00044 9.5E-09 70.8 8.1 68 8-75 6-82 (289)
200 KOG4439 RNA polymerase II tran 97.4 0.01 2.2E-07 65.1 18.2 89 250-353 770-861 (901)
201 PRK12727 flagellar biosynthesi 97.4 0.0014 3E-08 71.1 11.9 127 23-172 348-477 (559)
202 KOG1802 RNA helicase nonsense 97.4 0.00028 6E-09 76.2 6.1 70 11-81 411-480 (935)
203 smart00382 AAA ATPases associa 97.4 0.00066 1.4E-08 60.7 7.9 43 25-68 2-44 (148)
204 PF12340 DUF3638: Protein of u 97.4 0.00097 2.1E-08 64.5 9.2 106 3-112 16-143 (229)
205 PF07517 SecA_DEAD: SecA DEAD- 97.4 0.00027 5.8E-09 70.6 5.5 121 8-132 73-207 (266)
206 TIGR00376 DNA helicase, putati 97.3 0.00054 1.2E-08 77.7 8.4 66 10-76 157-223 (637)
207 PRK07952 DNA replication prote 97.3 0.0034 7.3E-08 62.3 12.7 115 26-175 100-215 (244)
208 PF00580 UvrD-helicase: UvrD/R 97.3 0.00051 1.1E-08 71.3 7.0 67 11-79 1-70 (315)
209 PRK14723 flhF flagellar biosyn 97.3 0.0031 6.7E-08 71.7 13.4 123 25-170 185-311 (767)
210 PF13173 AAA_14: AAA domain 97.2 0.0019 4.2E-08 57.5 9.3 35 24-60 1-35 (128)
211 PRK08727 hypothetical protein; 97.2 0.0023 5E-08 63.4 10.4 34 26-60 42-75 (233)
212 PRK14721 flhF flagellar biosyn 97.2 0.0048 1E-07 65.9 12.7 126 24-172 190-319 (420)
213 PRK06731 flhF flagellar biosyn 97.1 0.0074 1.6E-07 60.8 13.0 124 26-171 76-203 (270)
214 TIGR00604 rad3 DNA repair heli 97.1 0.0031 6.6E-08 73.1 11.7 184 156-346 443-671 (705)
215 PF05729 NACHT: NACHT domain 97.1 0.0034 7.3E-08 58.3 9.9 52 125-176 84-142 (166)
216 PHA03333 putative ATPase subun 97.1 0.015 3.2E-07 64.7 15.4 142 24-175 186-343 (752)
217 PRK06893 DNA replication initi 97.0 0.0038 8.3E-08 61.7 10.1 35 25-60 39-73 (229)
218 PF05621 TniB: Bacterial TniB 97.0 0.0049 1.1E-07 62.1 10.8 118 26-164 62-189 (302)
219 PRK09183 transposase/IS protei 97.0 0.0091 2E-07 60.1 12.8 38 22-60 99-136 (259)
220 PRK10416 signal recognition pa 97.0 0.011 2.4E-07 61.2 13.4 126 25-168 114-248 (318)
221 PRK05642 DNA replication initi 97.0 0.0049 1.1E-07 61.1 10.3 35 26-61 46-80 (234)
222 PF05127 Helicase_RecD: Helica 97.0 0.00047 1E-08 64.3 2.5 116 29-164 1-123 (177)
223 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0063 1.4E-07 59.9 10.7 36 24-60 37-72 (226)
224 TIGR03015 pepcterm_ATPase puta 96.9 0.0032 6.8E-08 63.9 8.6 55 25-80 43-97 (269)
225 TIGR00064 ftsY signal recognit 96.9 0.012 2.6E-07 59.6 12.4 126 26-169 73-207 (272)
226 PRK08084 DNA replication initi 96.9 0.0059 1.3E-07 60.6 9.9 35 25-60 45-79 (235)
227 PRK06835 DNA replication prote 96.9 0.014 3.1E-07 60.6 13.0 116 24-174 182-298 (329)
228 PRK08903 DnaA regulatory inact 96.8 0.0081 1.8E-07 59.3 10.4 37 24-61 41-77 (227)
229 PRK06995 flhF flagellar biosyn 96.8 0.014 3E-07 63.4 12.8 125 24-171 255-383 (484)
230 COG1484 DnaC DNA replication p 96.8 0.015 3.2E-07 58.3 12.1 116 21-175 101-219 (254)
231 PRK07003 DNA polymerase III su 96.7 0.0056 1.2E-07 69.0 8.7 49 111-161 108-156 (830)
232 PRK09112 DNA polymerase III su 96.7 0.017 3.7E-07 60.7 11.8 49 111-161 130-178 (351)
233 KOG2340 Uncharacterized conser 96.6 0.019 4.2E-07 61.0 11.8 111 217-351 552-669 (698)
234 PRK08116 hypothetical protein; 96.6 0.019 4E-07 58.2 11.6 114 26-174 115-230 (268)
235 PRK00149 dnaA chromosomal repl 96.6 0.014 3E-07 64.0 11.4 43 26-69 149-192 (450)
236 PRK12377 putative replication 96.6 0.029 6.3E-07 55.8 12.5 45 25-71 101-145 (248)
237 PRK14956 DNA polymerase III su 96.6 0.0085 1.8E-07 64.7 9.1 46 116-165 115-160 (484)
238 PF01695 IstB_IS21: IstB-like 96.6 0.0027 5.8E-08 60.0 4.8 117 22-176 44-161 (178)
239 TIGR02881 spore_V_K stage V sp 96.6 0.013 2.9E-07 59.1 10.1 21 26-46 43-63 (261)
240 COG1875 NYN ribonuclease and A 96.6 0.013 2.9E-07 59.8 9.6 61 5-65 223-287 (436)
241 PRK06921 hypothetical protein; 96.5 0.029 6.2E-07 56.7 12.0 37 24-61 116-153 (266)
242 PRK05707 DNA polymerase III su 96.5 0.012 2.7E-07 61.1 9.4 135 10-162 3-144 (328)
243 PF00004 AAA: ATPase family as 96.5 0.019 4.2E-07 50.8 9.6 22 28-49 1-22 (132)
244 PHA02533 17 large terminase pr 96.5 0.019 4.1E-07 63.7 11.3 158 7-173 56-219 (534)
245 PRK12402 replication factor C 96.5 0.03 6.6E-07 58.8 12.5 33 17-49 26-60 (337)
246 PF13307 Helicase_C_2: Helicas 96.4 0.0012 2.7E-08 61.7 1.5 120 216-345 8-144 (167)
247 PRK08939 primosomal protein Dn 96.4 0.027 5.8E-07 58.1 11.3 112 24-173 155-269 (306)
248 cd01120 RecA-like_NTPases RecA 96.4 0.016 3.5E-07 53.4 8.8 37 27-64 1-37 (165)
249 TIGR03499 FlhF flagellar biosy 96.4 0.013 2.8E-07 59.8 8.5 86 24-131 193-281 (282)
250 TIGR01425 SRP54_euk signal rec 96.3 0.033 7E-07 59.7 11.4 120 26-164 101-224 (429)
251 TIGR00362 DnaA chromosomal rep 96.3 0.027 5.9E-07 60.8 11.0 35 26-61 137-173 (405)
252 PRK11747 dinG ATP-dependent DN 96.3 0.012 2.6E-07 67.8 8.5 62 8-71 23-95 (697)
253 PRK00771 signal recognition pa 96.3 0.042 9.1E-07 59.3 12.0 118 26-164 96-217 (437)
254 COG2804 PulE Type II secretory 96.2 0.015 3.3E-07 62.3 8.3 42 8-49 239-282 (500)
255 PRK12323 DNA polymerase III su 96.2 0.032 6.9E-07 62.2 11.0 50 111-162 113-162 (700)
256 PRK13833 conjugal transfer pro 96.2 0.0097 2.1E-07 61.4 6.6 55 12-66 130-186 (323)
257 TIGR02782 TrbB_P P-type conjug 96.2 0.012 2.7E-07 60.4 7.3 49 18-66 125-174 (299)
258 cd01124 KaiC KaiC is a circadi 96.2 0.0059 1.3E-07 58.1 4.7 52 27-81 1-52 (187)
259 TIGR00959 ffh signal recogniti 96.2 0.045 9.8E-07 58.9 11.7 122 26-164 100-224 (428)
260 PRK14958 DNA polymerase III su 96.2 0.034 7.4E-07 61.4 11.0 44 116-161 113-156 (509)
261 PRK08691 DNA polymerase III su 96.1 0.015 3.2E-07 65.4 8.0 44 116-161 113-156 (709)
262 PRK14087 dnaA chromosomal repl 96.1 0.038 8.2E-07 60.2 11.0 45 26-71 142-187 (450)
263 PRK14949 DNA polymerase III su 96.1 0.036 7.8E-07 63.9 11.0 49 116-168 113-161 (944)
264 cd03115 SRP The signal recogni 96.1 0.034 7.4E-07 52.2 9.4 121 27-165 2-125 (173)
265 KOG0989 Replication factor C, 96.1 0.037 8.1E-07 55.3 9.6 43 119-163 126-168 (346)
266 KOG0391 SNF2 family DNA-depend 96.1 0.034 7.4E-07 64.2 10.4 116 216-355 1275-1392(1958)
267 PRK14957 DNA polymerase III su 96.1 0.018 3.9E-07 63.8 8.3 50 110-161 107-156 (546)
268 TIGR00604 rad3 DNA repair heli 96.1 0.011 2.4E-07 68.5 7.1 67 10-76 10-82 (705)
269 PRK14088 dnaA chromosomal repl 96.1 0.051 1.1E-06 59.2 11.7 37 26-62 131-168 (440)
270 PRK09111 DNA polymerase III su 96.1 0.049 1.1E-06 61.3 11.7 50 110-161 120-169 (598)
271 PRK14961 DNA polymerase III su 96.0 0.051 1.1E-06 57.7 11.3 49 111-161 108-156 (363)
272 PRK14086 dnaA chromosomal repl 96.0 0.041 8.8E-07 61.3 10.6 45 26-71 315-360 (617)
273 COG1444 Predicted P-loop ATPas 96.0 0.077 1.7E-06 60.1 12.8 135 10-164 211-356 (758)
274 PF00308 Bac_DnaA: Bacterial d 96.0 0.02 4.4E-07 56.0 7.4 102 26-164 35-140 (219)
275 PRK14712 conjugal transfer nic 96.0 0.063 1.4E-06 66.0 12.9 125 9-164 834-968 (1623)
276 PRK13709 conjugal transfer nic 96.0 0.065 1.4E-06 66.7 13.1 124 9-163 966-1099(1747)
277 PLN03025 replication factor C 96.0 0.06 1.3E-06 56.1 11.3 23 26-48 35-57 (319)
278 PRK00411 cdc6 cell division co 96.0 0.057 1.2E-06 58.1 11.5 23 26-48 56-78 (394)
279 PRK13851 type IV secretion sys 96.0 0.013 2.8E-07 61.2 6.1 45 21-67 158-202 (344)
280 PRK07994 DNA polymerase III su 95.9 0.024 5.2E-07 63.9 8.6 48 111-160 108-155 (647)
281 PRK12422 chromosomal replicati 95.9 0.047 1E-06 59.4 10.6 36 26-62 142-177 (445)
282 PRK14960 DNA polymerase III su 95.9 0.017 3.7E-07 64.5 7.2 43 117-161 113-155 (702)
283 PRK07471 DNA polymerase III su 95.9 0.085 1.8E-06 55.8 12.3 53 110-164 129-181 (365)
284 PRK06067 flagellar accessory p 95.9 0.021 4.5E-07 56.7 7.3 58 22-82 22-79 (234)
285 PF05496 RuvB_N: Holliday junc 95.9 0.016 3.4E-07 56.0 6.0 23 26-48 51-73 (233)
286 PRK14962 DNA polymerase III su 95.9 0.041 8.8E-07 60.2 10.0 21 28-48 39-59 (472)
287 PRK10867 signal recognition pa 95.9 0.063 1.4E-06 57.8 11.2 122 26-164 101-225 (433)
288 PRK10919 ATP-dependent DNA hel 95.9 0.017 3.8E-07 66.3 7.4 67 11-79 3-72 (672)
289 TIGR02760 TraI_TIGR conjugativ 95.9 0.038 8.2E-07 70.4 10.9 125 8-163 1017-1149(1960)
290 COG2256 MGS1 ATPase related to 95.9 0.029 6.2E-07 58.2 8.0 27 21-47 42-70 (436)
291 PRK13894 conjugal transfer ATP 95.8 0.016 3.4E-07 60.0 6.2 54 13-66 135-190 (319)
292 TIGR02880 cbbX_cfxQ probable R 95.8 0.057 1.2E-06 55.2 10.2 18 26-43 59-76 (284)
293 PRK06645 DNA polymerase III su 95.8 0.03 6.6E-07 61.6 8.6 23 26-48 44-66 (507)
294 TIGR00678 holB DNA polymerase 95.8 0.081 1.7E-06 50.5 10.4 31 18-48 4-37 (188)
295 PF01637 Arch_ATPase: Archaeal 95.7 0.014 3E-07 57.5 5.1 34 16-49 9-44 (234)
296 PRK14964 DNA polymerase III su 95.7 0.071 1.5E-06 58.3 10.9 49 111-161 105-153 (491)
297 PRK08533 flagellar accessory p 95.7 0.025 5.5E-07 55.9 6.7 40 22-62 21-60 (230)
298 PF00437 T2SE: Type II/IV secr 95.7 0.014 3.1E-07 59.2 5.2 44 22-66 124-167 (270)
299 PHA02544 44 clamp loader, smal 95.7 0.12 2.6E-06 53.7 12.3 22 27-48 45-66 (316)
300 PRK14963 DNA polymerase III su 95.6 0.08 1.7E-06 58.5 11.0 46 113-160 107-152 (504)
301 PRK06620 hypothetical protein; 95.6 0.038 8.3E-07 53.9 7.7 20 26-45 45-64 (214)
302 cd01130 VirB11-like_ATPase Typ 95.6 0.027 5.7E-07 53.7 6.4 49 12-62 11-60 (186)
303 PRK11054 helD DNA helicase IV; 95.6 0.024 5.3E-07 64.8 7.1 70 8-79 194-266 (684)
304 KOG1805 DNA replication helica 95.6 0.035 7.5E-07 63.3 8.0 65 11-76 670-735 (1100)
305 PRK14952 DNA polymerase III su 95.6 0.11 2.4E-06 58.2 12.1 48 112-161 108-155 (584)
306 PF13177 DNA_pol3_delta2: DNA 95.6 0.037 8.1E-07 51.4 7.1 53 110-164 90-142 (162)
307 TIGR02928 orc1/cdc6 family rep 95.6 0.041 8.8E-07 58.5 8.4 22 26-47 41-62 (365)
308 COG3587 Restriction endonuclea 95.6 0.038 8.3E-07 62.1 8.1 52 276-345 483-537 (985)
309 PRK14969 DNA polymerase III su 95.6 0.084 1.8E-06 58.8 11.0 49 111-161 108-156 (527)
310 COG0552 FtsY Signal recognitio 95.6 0.12 2.7E-06 52.6 11.0 121 26-164 140-269 (340)
311 PRK14951 DNA polymerase III su 95.6 0.052 1.1E-06 61.0 9.3 49 111-161 113-161 (618)
312 PRK09087 hypothetical protein; 95.5 0.086 1.9E-06 51.9 9.8 22 25-46 44-65 (226)
313 KOG2228 Origin recognition com 95.5 0.27 5.8E-06 50.0 13.1 125 24-166 48-183 (408)
314 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.042 9.1E-07 50.7 7.2 26 22-47 22-47 (157)
315 COG4962 CpaF Flp pilus assembl 95.5 0.027 5.9E-07 57.5 6.2 53 12-66 159-212 (355)
316 PRK11823 DNA repair protein Ra 95.5 0.019 4.2E-07 62.4 5.6 56 22-80 77-132 (446)
317 PRK07764 DNA polymerase III su 95.5 0.079 1.7E-06 61.8 10.9 46 114-161 112-157 (824)
318 PRK13900 type IV secretion sys 95.5 0.024 5.3E-07 59.0 6.1 45 21-67 156-200 (332)
319 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.062 1.3E-06 48.8 7.8 91 22-148 23-113 (144)
320 PRK04195 replication factor C 95.4 0.14 2.9E-06 56.7 11.8 25 25-49 39-63 (482)
321 PRK08769 DNA polymerase III su 95.4 0.087 1.9E-06 54.5 9.6 52 110-163 101-152 (319)
322 PF13555 AAA_29: P-loop contai 95.4 0.019 4.2E-07 43.5 3.5 23 25-47 23-45 (62)
323 PHA03368 DNA packaging termina 95.3 0.19 4.2E-06 55.9 12.2 140 24-174 253-400 (738)
324 cd01131 PilT Pilus retraction 95.2 0.026 5.7E-07 54.4 5.0 38 26-63 2-39 (198)
325 PRK14950 DNA polymerase III su 95.2 0.13 2.9E-06 58.1 11.4 47 112-160 110-156 (585)
326 PF01443 Viral_helicase1: Vira 95.2 0.018 3.9E-07 57.0 4.0 21 28-48 1-21 (234)
327 cd01393 recA_like RecA is a b 95.2 0.038 8.3E-07 54.3 6.1 42 22-63 16-62 (226)
328 PRK14955 DNA polymerase III su 95.2 0.15 3.2E-06 54.9 11.0 23 111-133 116-138 (397)
329 TIGR01075 uvrD DNA helicase II 95.2 0.037 8.1E-07 64.3 6.9 67 11-79 5-74 (715)
330 PRK06964 DNA polymerase III su 95.2 0.084 1.8E-06 55.1 8.8 53 109-163 119-171 (342)
331 CHL00181 cbbX CbbX; Provisiona 95.2 0.061 1.3E-06 55.0 7.6 22 25-46 59-80 (287)
332 TIGR01074 rep ATP-dependent DN 95.1 0.037 8E-07 64.0 6.6 67 11-79 2-71 (664)
333 PRK14959 DNA polymerase III su 95.1 0.15 3.1E-06 57.3 10.8 23 26-48 39-61 (624)
334 PTZ00112 origin recognition co 95.1 0.2 4.4E-06 57.5 11.9 40 7-46 755-802 (1164)
335 PRK05896 DNA polymerase III su 95.1 0.083 1.8E-06 58.8 8.9 49 111-161 108-156 (605)
336 PRK07940 DNA polymerase III su 95.1 0.15 3.2E-06 54.5 10.5 51 110-163 105-155 (394)
337 COG1702 PhoH Phosphate starvat 95.0 0.044 9.6E-07 55.8 5.9 55 8-62 126-181 (348)
338 PRK12900 secA preprotein trans 95.0 0.026 5.7E-07 65.3 4.8 119 12-132 138-268 (1025)
339 PF03354 Terminase_1: Phage Te 95.0 0.082 1.8E-06 58.4 8.6 146 13-164 1-164 (477)
340 COG2805 PilT Tfp pilus assembl 94.9 0.029 6.4E-07 55.9 4.2 38 24-61 124-161 (353)
341 cd01121 Sms Sms (bacterial rad 94.9 0.042 9.1E-07 58.2 5.8 51 22-74 79-129 (372)
342 TIGR02397 dnaX_nterm DNA polym 94.8 0.22 4.8E-06 52.7 11.1 37 110-148 105-141 (355)
343 TIGR03345 VI_ClpV1 type VI sec 94.8 0.17 3.7E-06 59.6 11.1 122 27-173 598-727 (852)
344 cd00544 CobU Adenosylcobinamid 94.8 0.1 2.2E-06 48.7 7.5 45 28-76 2-46 (169)
345 cd01129 PulE-GspE PulE/GspE Th 94.8 0.074 1.6E-06 53.7 7.0 54 9-63 62-117 (264)
346 PRK00440 rfc replication facto 94.8 0.3 6.6E-06 50.7 11.9 23 26-48 39-61 (319)
347 cd03228 ABCC_MRP_Like The MRP 94.7 0.17 3.7E-06 47.4 8.9 37 22-59 25-61 (171)
348 PRK13342 recombination factor 94.7 0.17 3.8E-06 54.7 10.2 21 27-47 38-58 (413)
349 PTZ00293 thymidine kinase; Pro 94.7 0.036 7.9E-07 53.3 4.3 40 24-64 3-42 (211)
350 KOG0388 SNF2 family DNA-depend 94.7 0.19 4.1E-06 55.5 10.0 116 216-355 1043-1159(1185)
351 cd03222 ABC_RNaseL_inhibitor T 94.7 0.16 3.4E-06 47.9 8.5 94 21-148 21-114 (177)
352 TIGR02655 circ_KaiC circadian 94.7 0.047 1E-06 60.3 5.7 57 22-81 260-316 (484)
353 PRK11773 uvrD DNA-dependent he 94.7 0.068 1.5E-06 62.2 7.3 68 10-79 9-79 (721)
354 COG3973 Superfamily I DNA and 94.7 0.07 1.5E-06 58.0 6.6 66 13-80 215-285 (747)
355 PRK14965 DNA polymerase III su 94.7 0.24 5.2E-06 55.9 11.3 50 110-161 107-156 (576)
356 PRK08699 DNA polymerase III su 94.7 0.18 3.9E-06 52.5 9.6 51 109-161 100-150 (325)
357 PRK14948 DNA polymerase III su 94.7 0.1 2.2E-06 59.1 8.4 23 26-48 39-61 (620)
358 cd03247 ABCC_cytochrome_bd The 94.7 0.11 2.3E-06 49.2 7.3 127 22-161 25-154 (178)
359 cd03238 ABC_UvrA The excision 94.6 0.17 3.6E-06 47.7 8.5 25 22-46 18-42 (176)
360 TIGR02012 tigrfam_recA protein 94.6 0.089 1.9E-06 54.3 7.1 55 22-81 52-106 (321)
361 TIGR02788 VirB11 P-type DNA tr 94.6 0.06 1.3E-06 55.8 5.9 41 22-64 141-181 (308)
362 PRK08451 DNA polymerase III su 94.6 0.21 4.6E-06 55.2 10.4 43 117-161 112-154 (535)
363 TIGR01420 pilT_fam pilus retra 94.6 0.056 1.2E-06 56.9 5.7 42 24-65 121-162 (343)
364 PRK12901 secA preprotein trans 94.6 0.047 1E-06 63.3 5.4 120 12-132 169-300 (1112)
365 PRK10865 protein disaggregatio 94.5 0.28 6.1E-06 58.0 11.9 81 27-132 600-680 (857)
366 PF00931 NB-ARC: NB-ARC domain 94.5 0.055 1.2E-06 55.3 5.5 66 16-81 6-77 (287)
367 PRK05563 DNA polymerase III su 94.5 0.093 2E-06 58.9 7.6 36 111-148 108-143 (559)
368 COG4626 Phage terminase-like p 94.4 0.28 6.2E-06 53.3 10.6 150 8-164 59-225 (546)
369 PRK10436 hypothetical protein; 94.3 0.095 2.1E-06 57.1 6.9 52 9-61 200-253 (462)
370 PRK13341 recombination factor 94.3 0.23 5E-06 57.2 10.2 22 26-47 53-74 (725)
371 PRK07133 DNA polymerase III su 94.3 0.15 3.3E-06 58.1 8.5 50 110-161 106-155 (725)
372 COG1474 CDC6 Cdc6-related prot 94.2 0.34 7.3E-06 51.3 10.6 38 9-46 19-63 (366)
373 PF12775 AAA_7: P-loop contain 94.2 0.15 3.3E-06 51.6 7.7 27 22-48 30-56 (272)
374 KOG0741 AAA+-type ATPase [Post 94.2 0.27 5.9E-06 52.8 9.5 107 27-171 540-656 (744)
375 PHA00149 DNA encapsidation pro 94.2 0.5 1.1E-05 46.9 10.7 144 28-174 20-171 (331)
376 PRK09354 recA recombinase A; P 94.2 0.12 2.5E-06 53.9 6.9 56 22-82 57-112 (349)
377 COG0553 HepA Superfamily II DN 94.1 0.099 2.2E-06 62.4 7.4 109 219-354 713-826 (866)
378 cd03214 ABC_Iron-Siderophores_ 94.1 0.13 2.8E-06 48.7 6.7 37 22-59 22-58 (180)
379 PRK06871 DNA polymerase III su 94.1 0.14 3.1E-06 53.0 7.5 52 110-163 95-146 (325)
380 TIGR00635 ruvB Holliday juncti 94.1 0.34 7.4E-06 50.0 10.4 22 26-47 31-52 (305)
381 COG0470 HolB ATPase involved i 94.1 0.24 5.2E-06 51.6 9.2 49 112-162 99-147 (325)
382 PRK14953 DNA polymerase III su 94.1 0.14 3.1E-06 56.3 7.7 49 109-159 106-154 (486)
383 cd03216 ABC_Carb_Monos_I This 94.0 0.18 3.9E-06 46.9 7.4 125 22-172 23-148 (163)
384 PRK04841 transcriptional regul 94.0 0.22 4.7E-06 59.9 10.0 33 16-48 20-55 (903)
385 TIGR01073 pcrA ATP-dependent D 94.0 0.1 2.3E-06 60.8 7.0 67 11-79 5-74 (726)
386 cd03230 ABC_DR_subfamily_A Thi 94.0 0.15 3.3E-06 47.8 6.9 125 22-161 23-152 (173)
387 TIGR03877 thermo_KaiC_1 KaiC d 94.0 0.063 1.4E-06 53.3 4.4 56 22-80 18-73 (237)
388 KOG2028 ATPase related to the 93.9 0.24 5.1E-06 50.8 8.2 27 22-48 157-185 (554)
389 TIGR02524 dot_icm_DotB Dot/Icm 93.9 0.066 1.4E-06 56.4 4.6 30 18-47 126-156 (358)
390 KOG2543 Origin recognition com 93.9 0.36 7.8E-06 50.0 9.5 147 7-170 6-164 (438)
391 KOG0391 SNF2 family DNA-depend 93.9 0.24 5.2E-06 57.6 9.1 120 11-132 616-747 (1958)
392 TIGR02858 spore_III_AA stage I 93.9 0.55 1.2E-05 47.4 11.0 33 16-48 99-134 (270)
393 CHL00176 ftsH cell division pr 93.9 0.31 6.7E-06 55.4 10.2 23 26-48 217-239 (638)
394 COG0593 DnaA ATPase involved i 93.8 0.54 1.2E-05 50.0 11.1 38 25-62 113-151 (408)
395 cd03229 ABC_Class3 This class 93.8 0.13 2.8E-06 48.6 5.9 117 22-149 23-144 (178)
396 PF05876 Terminase_GpA: Phage 93.7 0.11 2.3E-06 58.4 6.0 68 10-77 16-86 (557)
397 PRK14970 DNA polymerase III su 93.7 0.29 6.2E-06 52.1 9.1 29 18-46 29-60 (367)
398 COG1126 GlnQ ABC-type polar am 93.6 0.08 1.7E-06 50.5 4.1 24 22-45 25-48 (240)
399 COG3267 ExeA Type II secretory 93.6 0.51 1.1E-05 46.3 9.6 55 22-78 47-103 (269)
400 TIGR02538 type_IV_pilB type IV 93.5 0.14 3E-06 57.7 6.5 41 8-48 297-339 (564)
401 PRK14954 DNA polymerase III su 93.5 0.31 6.7E-06 55.1 9.2 49 111-161 116-164 (620)
402 PRK05973 replicative DNA helic 93.5 0.074 1.6E-06 52.4 3.8 54 20-75 59-112 (237)
403 TIGR02533 type_II_gspE general 93.5 0.13 2.8E-06 56.6 6.1 51 9-60 224-276 (486)
404 TIGR03819 heli_sec_ATPase heli 93.5 0.14 2.9E-06 53.7 6.0 52 13-66 165-217 (340)
405 COG1110 Reverse gyrase [DNA re 93.4 0.22 4.8E-06 57.4 7.8 76 207-285 115-190 (1187)
406 PRK03992 proteasome-activating 93.4 0.42 9.1E-06 51.2 9.8 24 25-48 165-188 (389)
407 PRK14971 DNA polymerase III su 93.3 0.42 9E-06 54.2 10.0 50 111-163 110-159 (614)
408 PRK08058 DNA polymerase III su 93.3 0.45 9.7E-06 49.8 9.6 50 110-161 98-147 (329)
409 TIGR01547 phage_term_2 phage t 93.3 0.37 8.1E-06 51.8 9.4 132 26-165 2-141 (396)
410 TIGR02688 conserved hypothetic 93.3 0.18 3.9E-06 53.5 6.5 26 20-45 204-229 (449)
411 cd03246 ABCC_Protease_Secretio 93.3 0.26 5.6E-06 46.2 7.1 37 22-59 25-61 (173)
412 cd00984 DnaB_C DnaB helicase C 93.2 0.071 1.5E-06 53.1 3.3 44 18-61 6-49 (242)
413 PRK00080 ruvB Holliday junctio 93.2 0.18 3.9E-06 52.7 6.5 23 26-48 52-74 (328)
414 cd03223 ABCD_peroxisomal_ALDP 93.2 0.26 5.7E-06 45.9 6.9 26 22-47 24-49 (166)
415 COG1136 SalX ABC-type antimicr 93.2 0.095 2.1E-06 51.0 3.9 25 22-46 28-52 (226)
416 TIGR02974 phageshock_pspF psp 93.1 0.65 1.4E-05 48.5 10.4 37 12-49 9-45 (329)
417 TIGR02525 plasmid_TraJ plasmid 93.1 0.13 2.8E-06 54.4 5.2 43 23-65 147-190 (372)
418 COG1618 Predicted nucleotide k 93.1 0.24 5.1E-06 45.1 6.0 21 26-46 6-26 (179)
419 TIGR02785 addA_Gpos recombinat 93.1 0.21 4.5E-06 61.6 7.6 66 12-79 3-70 (1232)
420 PF03237 Terminase_6: Terminas 93.0 1 2.3E-05 47.5 12.2 127 29-164 1-137 (384)
421 PRK13764 ATPase; Provisional 93.0 0.16 3.4E-06 56.9 5.8 30 17-46 248-278 (602)
422 COG2909 MalT ATP-dependent tra 92.9 0.16 3.5E-06 57.7 5.8 33 15-47 24-59 (894)
423 PF13207 AAA_17: AAA domain; P 92.9 0.086 1.9E-06 46.0 3.1 22 27-48 1-22 (121)
424 PF10443 RNA12: RNA12 protein; 92.9 0.45 9.7E-06 50.5 8.7 53 122-174 148-204 (431)
425 COG1222 RPT1 ATP-dependent 26S 92.9 0.37 8E-06 49.5 7.8 32 16-48 174-207 (406)
426 PF02367 UPF0079: Uncharacteri 92.9 0.14 3E-06 44.9 4.2 48 16-67 6-53 (123)
427 COG3421 Uncharacterized protei 92.9 0.35 7.7E-06 52.6 7.9 135 30-165 2-166 (812)
428 cd03239 ABC_SMC_head The struc 92.8 0.37 8.1E-06 45.5 7.4 22 27-48 24-45 (178)
429 PRK06647 DNA polymerase III su 92.8 0.31 6.8E-06 54.6 7.9 31 18-48 28-61 (563)
430 PF06745 KaiC: KaiC; InterPro 92.8 0.092 2E-06 51.7 3.3 57 23-81 17-73 (226)
431 PRK07399 DNA polymerase III su 92.7 1.3 2.8E-05 45.9 11.8 51 109-162 111-161 (314)
432 PF12846 AAA_10: AAA-like doma 92.6 0.12 2.6E-06 53.0 4.2 43 25-68 1-43 (304)
433 TIGR02868 CydC thiol reductant 92.6 0.33 7.1E-06 54.5 7.8 37 22-59 358-394 (529)
434 TIGR02640 gas_vesic_GvpN gas v 92.5 0.16 3.4E-06 51.3 4.8 36 11-46 7-42 (262)
435 PF02456 Adeno_IVa2: Adenoviru 92.5 0.15 3.2E-06 51.2 4.2 41 27-67 89-130 (369)
436 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.15 3.3E-06 51.3 4.6 39 22-61 33-71 (259)
437 PRK06305 DNA polymerase III su 92.5 0.51 1.1E-05 51.5 8.9 30 19-48 30-62 (451)
438 TIGR01241 FtsH_fam ATP-depende 92.4 0.4 8.6E-06 53.3 8.1 23 26-48 89-111 (495)
439 PF13481 AAA_25: AAA domain; P 92.3 0.29 6.3E-06 46.7 6.1 54 24-78 31-93 (193)
440 PRK13695 putative NTPase; Prov 92.3 0.61 1.3E-05 43.8 8.1 21 27-47 2-22 (174)
441 PF13671 AAA_33: AAA domain; P 92.3 0.11 2.5E-06 46.7 3.1 23 27-49 1-23 (143)
442 PRK06090 DNA polymerase III su 92.2 0.46 1E-05 49.1 7.7 52 110-163 96-147 (319)
443 COG0630 VirB11 Type IV secreto 92.2 0.2 4.3E-06 51.8 5.1 47 18-66 136-182 (312)
444 KOG1969 DNA replication checkp 92.2 0.23 5E-06 55.4 5.7 41 10-50 305-351 (877)
445 PRK10917 ATP-dependent DNA hel 92.2 0.44 9.5E-06 55.1 8.4 79 216-299 309-388 (681)
446 PLN03187 meiotic recombination 92.2 0.27 5.9E-06 51.4 6.0 40 23-62 124-168 (344)
447 PRK11034 clpA ATP-dependent Cl 92.2 0.59 1.3E-05 54.2 9.3 22 25-46 207-228 (758)
448 TIGR03689 pup_AAA proteasome A 92.2 0.41 8.8E-06 52.7 7.6 22 25-46 216-237 (512)
449 PRK05580 primosome assembly pr 92.1 0.26 5.6E-06 56.8 6.3 74 217-299 190-263 (679)
450 cd01394 radB RadB. The archaea 92.1 0.17 3.6E-06 49.5 4.2 38 22-60 16-53 (218)
451 COG1435 Tdk Thymidine kinase [ 92.1 0.6 1.3E-05 44.0 7.5 89 25-133 4-93 (201)
452 TIGR01243 CDC48 AAA family ATP 92.1 0.39 8.5E-06 56.1 7.8 24 24-47 211-234 (733)
453 TIGR03346 chaperone_ClpB ATP-d 92.1 1.5 3.3E-05 52.1 12.7 120 26-172 596-725 (852)
454 cd03213 ABCG_EPDR ABCG transpo 92.0 0.37 8E-06 46.2 6.4 25 22-46 32-56 (194)
455 TIGR02639 ClpA ATP-dependent C 92.0 0.88 1.9E-05 53.1 10.7 23 25-47 203-225 (731)
456 PRK07993 DNA polymerase III su 92.0 0.23 5E-06 51.9 5.3 52 109-162 95-146 (334)
457 PF05894 Podovirus_Gp16: Podov 92.0 1.1 2.5E-05 45.2 9.8 134 24-163 16-160 (333)
458 COG3598 RepA RecA-family ATPas 92.0 2.2 4.7E-05 43.4 11.6 147 15-164 78-242 (402)
459 COG5008 PilU Tfp pilus assembl 92.0 0.16 3.5E-06 49.8 3.7 40 22-61 124-163 (375)
460 KOG0733 Nuclear AAA ATPase (VC 91.9 0.21 4.5E-06 54.6 4.9 94 28-169 226-342 (802)
461 COG1131 CcmA ABC-type multidru 91.9 0.34 7.4E-06 49.7 6.4 25 22-46 28-52 (293)
462 cd01122 GP4d_helicase GP4d_hel 91.9 0.17 3.6E-06 51.4 4.1 58 18-76 23-80 (271)
463 TIGR02237 recomb_radB DNA repa 91.9 0.17 3.7E-06 49.1 3.9 40 22-62 9-48 (209)
464 COG1134 TagH ABC-type polysacc 91.9 0.35 7.5E-06 47.2 5.8 71 101-174 144-215 (249)
465 PF03969 AFG1_ATPase: AFG1-lik 91.8 0.53 1.1E-05 49.7 7.8 112 25-170 62-174 (362)
466 TIGR00150 HI0065_YjeE ATPase, 91.8 0.22 4.7E-06 44.4 4.1 49 16-68 13-61 (133)
467 COG3839 MalK ABC-type sugar tr 91.8 0.17 3.8E-06 52.3 4.0 25 22-46 26-50 (338)
468 PRK05800 cobU adenosylcobinami 91.8 0.24 5.3E-06 46.3 4.7 47 27-77 3-49 (170)
469 cd03233 ABC_PDR_domain1 The pl 91.8 0.12 2.5E-06 50.0 2.6 25 22-46 30-54 (202)
470 TIGR01243 CDC48 AAA family ATP 91.8 0.48 1E-05 55.4 8.2 25 25-49 487-511 (733)
471 cd03215 ABC_Carb_Monos_II This 91.8 0.63 1.4E-05 44.0 7.6 37 22-59 23-59 (182)
472 COG4987 CydC ABC-type transpor 91.7 0.72 1.6E-05 50.0 8.5 31 17-47 352-386 (573)
473 cd01125 repA Hexameric Replica 91.6 1.1 2.3E-05 44.6 9.4 37 25-61 1-48 (239)
474 COG1074 RecB ATP-dependent exo 91.6 0.24 5.2E-06 60.4 5.6 57 23-79 14-74 (1139)
475 PRK11034 clpA ATP-dependent Cl 91.6 0.5 1.1E-05 54.8 7.9 19 27-45 490-508 (758)
476 cd03282 ABC_MSH4_euk MutS4 hom 91.5 0.25 5.5E-06 47.7 4.6 22 24-45 28-49 (204)
477 CHL00095 clpC Clp protease ATP 91.5 0.59 1.3E-05 55.3 8.5 19 27-45 541-559 (821)
478 TIGR00595 priA primosomal prot 91.5 0.31 6.7E-06 54.0 5.9 74 217-299 25-98 (505)
479 COG2812 DnaX DNA polymerase II 91.5 0.23 5.1E-06 54.3 4.8 52 110-165 107-158 (515)
480 KOG0739 AAA+-type ATPase [Post 91.5 0.54 1.2E-05 47.0 6.8 36 27-67 168-203 (439)
481 COG0467 RAD55 RecA-superfamily 91.4 0.21 4.6E-06 50.3 4.2 58 22-82 20-77 (260)
482 cd00820 PEPCK_HprK Phosphoenol 91.4 0.13 2.9E-06 43.7 2.2 24 23-46 13-36 (107)
483 PRK09519 recA DNA recombinatio 91.3 0.47 1E-05 54.6 7.2 56 22-82 57-112 (790)
484 cd03237 ABC_RNaseL_inhibitor_d 91.3 0.32 6.9E-06 48.6 5.3 25 22-46 22-46 (246)
485 PRK08760 replicative DNA helic 91.3 0.79 1.7E-05 50.4 8.7 57 19-76 223-279 (476)
486 TIGR03263 guanyl_kin guanylate 91.3 0.18 3.9E-06 47.6 3.3 23 25-47 1-23 (180)
487 cd01127 TrwB Bacterial conjuga 91.2 0.18 3.9E-06 54.5 3.6 44 24-68 41-84 (410)
488 PRK04328 hypothetical protein; 91.2 0.26 5.6E-06 49.3 4.5 57 22-81 20-76 (249)
489 cd00561 CobA_CobO_BtuR ATP:cor 91.2 0.73 1.6E-05 42.4 7.1 38 27-65 4-41 (159)
490 TIGR03600 phage_DnaB phage rep 91.2 0.71 1.5E-05 50.2 8.2 59 17-76 186-244 (421)
491 PRK14712 conjugal transfer nic 91.2 14 0.0003 46.4 19.7 221 11-267 282-513 (1623)
492 PHA02244 ATPase-like protein 91.1 0.31 6.8E-06 50.9 5.0 35 14-48 108-142 (383)
493 COG1223 Predicted ATPase (AAA+ 91.0 1.3 2.8E-05 43.6 8.7 46 124-169 212-267 (368)
494 COG2255 RuvB Holliday junction 90.9 0.52 1.1E-05 47.0 6.1 21 26-46 53-73 (332)
495 PF13238 AAA_18: AAA domain; P 90.9 0.15 3.2E-06 44.8 2.2 18 28-45 1-18 (129)
496 TIGR02655 circ_KaiC circadian 90.9 0.24 5.2E-06 54.7 4.3 58 22-81 18-75 (484)
497 PF07728 AAA_5: AAA domain (dy 90.8 0.21 4.6E-06 44.8 3.2 23 27-49 1-23 (139)
498 COG1219 ClpX ATP-dependent pro 90.8 0.14 3E-06 51.6 2.1 19 24-42 96-114 (408)
499 TIGR03881 KaiC_arch_4 KaiC dom 90.8 0.26 5.7E-06 48.5 4.1 56 22-80 17-72 (229)
500 KOG2373 Predicted mitochondria 90.7 0.11 2.3E-06 52.8 1.2 33 17-49 265-297 (514)
No 1
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-148 Score=1147.70 Aligned_cols=643 Identities=73% Similarity=1.161 Sum_probs=629.3
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCe-EEEecchHHHHHHHHHHHHHHhCC
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGK-VGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~-ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
+.+.|+.||+|+++++++.++.+++++||.|.||||||||+|||+.+.++.++++ |.|+||||++|+++|.||++++|.
T Consensus 257 iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 257 IEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 5677999999999999999999999999999999999999999999999998885 999999999999999999999999
Q ss_pred ccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 81 KLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 81 ~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
++|..|||.++|+++++.+|.|.|||+|||+|.++.+|.|..|++|||||||||++++|++.++++++.+.+|++|++++
T Consensus 337 kLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIs 416 (902)
T KOG0923|consen 337 KLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLIS 416 (902)
T ss_pred ccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 041899 161 SATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKER 240 (650)
Q Consensus 161 SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~ 240 (650)
|||+|++.|..||+++|++.+|||.|||+++|...|+.+|+++++..+++||.+++.|+||||+++.++|+.+.+.|.+.
T Consensus 417 SAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~ 496 (902)
T KOG0923|consen 417 SATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKER 496 (902)
T ss_pred ccccCHHHHHHhccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccccee
Q 041899 241 IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLV 320 (650)
Q Consensus 241 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~ 320 (650)
+..++.+..++.++|+|++||.+.|.+||+..++|.+|||+||||||+|+||++|.||||+|++|++.|+|++||++|..
T Consensus 497 ~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v 576 (902)
T KOG0923|consen 497 CRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLV 576 (902)
T ss_pred HHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHH
Q 041899 321 YPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRK 400 (650)
Q Consensus 321 ~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~ 400 (650)
.|+|++++.||+|||||+|||+|||||+...|.+.+.+.+.|||+|++|.+++|.|+++||.|+.+|+|+||||.+++..
T Consensus 577 ~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~ 656 (902)
T KOG0923|consen 577 TPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLK 656 (902)
T ss_pred eeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHHHHHhcc
Q 041899 401 ALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNF 480 (650)
Q Consensus 401 a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~ 480 (650)
|++.|+.+||++..|+||.+|+.|++||+||+++|||+.+..++|.+++++||||||++.++|++|+++...++++++.|
T Consensus 657 aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f 736 (902)
T KOG0923|consen 657 ALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNF 736 (902)
T ss_pred HHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHHHHHHHHhccccc
Q 041899 481 YQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLH 560 (650)
Q Consensus 481 ~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 560 (650)
..+ .|||+++|++|+.|..++++.+||.+||+++++|++|+++|.||..++.+.++...++..+...|++++.+|||+|
T Consensus 737 ~~~-~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h 815 (902)
T KOG0923|consen 737 EEP-VGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYH 815 (902)
T ss_pred CCC-CcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhcccccc
Confidence 875 6999999999999999999999999999999999999999999999999999988888878889999999999999
Q ss_pred ceEEccCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHcCccceeeeeccccc-cc
Q 041899 561 TARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRK-KM 639 (650)
Q Consensus 561 va~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~~~~~~~~~~-~~ 639 (650)
+|++..+|+|+++...+.|++||.|+++...|.||+|++++.|+|.|||.++.+.++||.+++||||.-+++++..+ |+
T Consensus 816 ~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv~tske~mr~~~e~e~~Wlie~aphyyk~kdled~~~kk~ 895 (902)
T KOG0923|consen 816 TAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLEDATNKKM 895 (902)
T ss_pred ceeccCCCcceeeccCcceeecCcccccccCCceEEEeehhcChHHHHHHHHhhhhhHHHHhchhhhhhhhccccccccc
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999988877 59
Q ss_pred ccccCC
Q 041899 640 PRVAGR 645 (650)
Q Consensus 640 ~~~~~~ 645 (650)
|+..++
T Consensus 896 ~k~~g~ 901 (902)
T KOG0923|consen 896 PKKIGK 901 (902)
T ss_pred cccccc
Confidence 998875
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-146 Score=1145.92 Aligned_cols=626 Identities=59% Similarity=0.993 Sum_probs=606.8
Q ss_pred ChHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 1 MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 1 ~l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
++.++|..|||+++..+++..+.+++++||.|+||||||||+||++++.++...|+|.|+||||++|.++|+||+.|+|.
T Consensus 42 ~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 42 SIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred CHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCC
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 81 KLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 81 ~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
.+|..|||.+||++.++..|+|.|+|+|+|+|+++.||.|++|++||+||||||++++|++++++|.+.+.++++|+|+|
T Consensus 122 ~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIim 201 (674)
T KOG0922|consen 122 QLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIM 201 (674)
T ss_pred CcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH
Q 041899 161 SATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKER 240 (650)
Q Consensus 161 SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~ 240 (650)
|||+|++.|++||+++|++.++||.|||+++|.+.+..+|+++.+..++++|.++++|+||||++|++||+.+++.|.+.
T Consensus 202 SATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~ 281 (674)
T KOG0922|consen 202 SATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRER 281 (674)
T ss_pred eeeecHHHHHHHhcCCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccccee
Q 041899 241 IRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLV 320 (650)
Q Consensus 241 ~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~ 320 (650)
.+.+....+. .+.++||.||.++|.++|+..+.|.+|||+|||+||+|+|||+|.||||+|++|++.|||++|++.|..
T Consensus 282 ~~~~~~~~~~-~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v 360 (674)
T KOG0922|consen 282 AKSLPEDCPE-LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIV 360 (674)
T ss_pred hhhccccCcc-eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeE
Confidence 8777766655 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHH
Q 041899 321 YPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRK 400 (650)
Q Consensus 321 ~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~ 400 (650)
.|+|++++.||+|||||++||+|||||++++| +.|++.+.|||+|++|...+|+||++|++|+..|+|+|||+.+++..
T Consensus 361 ~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~-~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~ 439 (674)
T KOG0922|consen 361 VPISKASANQRAGRAGRTGPGKCYRLYTESAY-DKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEE 439 (674)
T ss_pred EechHHHHhhhcccCCCCCCceEEEeeeHHHH-hhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHH
Confidence 99999999999999999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCccH-HHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHH-HHHHHh
Q 041899 401 ALELLYALGALNQVGELTK-VGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL-ADNARM 478 (650)
Q Consensus 401 a~~~L~~~g~l~~~~~lT~-lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~-~~~~~~ 478 (650)
|++.|+.+||||++|.+|. +|+.|+.+|++|.++|+|+.+..+||.+++++|||+||+ +++|.+|.+++.+ ++..|.
T Consensus 440 AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv-~~~f~~p~~~~~~~a~~~~~ 518 (674)
T KOG0922|consen 440 ALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSV-QSVFSRPKDKKAEDADRKRA 518 (674)
T ss_pred HHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeec-cceecCccchhhhhhhHHHH
Confidence 9999999999999999998 999999999999999999999999999999999999999 7899999998877 888899
Q ss_pred cccCCCCCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHHHHHHHHhccc
Q 041899 479 NFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFL 558 (650)
Q Consensus 479 ~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 558 (650)
+|... .|||+++|++|+.|.+++.+.+||.+||||.+.|++|.++|+||.+++++.+++..++..|.+.+++|||+|||
T Consensus 519 kf~~~-eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff 597 (674)
T KOG0922|consen 519 KFANP-EGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFF 597 (674)
T ss_pred hhcCc-ccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHH
Confidence 99875 58999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred ccceEEc-cCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHcCccceeee
Q 041899 559 LHTARLQ-KNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKD 631 (650)
Q Consensus 559 ~~va~~~-~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~~~~ 631 (650)
.|+|+++ ++| |+++.+++.|+|||||+|+..+|+||+|+|++.|+|.|||.||.|+++||.+++|+++...+
T Consensus 598 ~N~A~~~~~~~-Yrti~~~~~v~IHPSS~l~~~~p~~viy~el~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~ 670 (674)
T KOG0922|consen 598 RNVAERDYQDG-YRTIRGGQPVYIHPSSVLFRRKPEWVIYHELLQTTKEYMRNVTAIDPEWLLELAPHFFKQSD 670 (674)
T ss_pred HHHHHhhcCCC-eEEccCCcEEEEechHHhhcCCCCEEEEEEEeecchHhHhheeecCHHHHHHhCchHhhccc
Confidence 9999997 455 99999999999999999999999999999999999999999999999999999999976544
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-143 Score=1110.12 Aligned_cols=638 Identities=53% Similarity=0.924 Sum_probs=617.9
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+.++|+.||++..++++++.+.+|+++||+|+||||||||+|||+++.++..+|.|.|+||||++|+++|+|++.|+|..
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 82 LGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 82 ~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+|..|||.+||++.++..|.|.|+|+|+|+|+.+.+..|.+|++||+||||||++++|+++++++.++..+.++|+|++|
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH
Q 041899 162 ATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI 241 (650)
Q Consensus 162 AT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~ 241 (650)
||+|++.|.+|||+||.+.++||+|||++.|...+..+|++.++...+.+|...+.|+||||.+|+++++-.+..+...+
T Consensus 508 ATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l 587 (1042)
T KOG0924|consen 508 ATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKL 587 (1042)
T ss_pred ccccHHHHHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999887
Q ss_pred HhhcCC-CCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccccee
Q 041899 242 RKLGTK-IGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLV 320 (650)
Q Consensus 242 ~~~~~~-~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~ 320 (650)
.++... ..++.++|+|+.||.+.|.++|+..+.|.+|+||||||||+++|||+|.||||+|++|.++|+++.|+..|..
T Consensus 588 ~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~ 667 (1042)
T KOG0924|consen 588 EQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQI 667 (1042)
T ss_pred HhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEE
Confidence 765432 2378999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHH
Q 041899 321 YPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRK 400 (650)
Q Consensus 321 ~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~ 400 (650)
.|+|++++.||+|||||+|||.|||||++..|.+.|.+.+.|||+|++|.+++|.|+++|++++.+|+|+|||+.+.+..
T Consensus 668 ~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~ 747 (1042)
T KOG0924|consen 668 VPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLN 747 (1042)
T ss_pred EechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHHHHHhcc
Q 041899 401 ALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNF 480 (650)
Q Consensus 401 a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~ 480 (650)
++-.|..+|||+..|.||++|+.|++||+||.++|||+.|+.+||.+|+++|++|||+ +.+|++|++..++++.+|.+|
T Consensus 748 sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSv-p~VF~rpker~eead~ar~Kf 826 (1042)
T KOG0924|consen 748 SLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSV-PAVFYRPKEREEEADAAREKF 826 (1042)
T ss_pred HHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcc-cceeeccccchhhhhhHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 789999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHHHHHHHHhccccc
Q 041899 481 YQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLH 560 (650)
Q Consensus 481 ~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 560 (650)
... .|||||+||+|++|.+++++..||.+|+|+.++|+.|+.+|+||+++|+.+++++.|+ .+|+.+++|||+|||.|
T Consensus 827 ~~~-~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn 904 (1042)
T KOG0924|consen 827 QVP-ESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHN 904 (1042)
T ss_pred cCC-CCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHH
Confidence 874 6999999999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred ceEEccCCCEEEeecCCeEEECCCCCCCCC-CCcEEEEeeeccCchhhehhccccCHHHHHhHcCccceeeeeccccccc
Q 041899 561 TARLQKNGSYWTVKHPQKVHVHPSSGLAQV-PKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKM 639 (650)
Q Consensus 561 va~~~~~~~y~~~~~~~~~~ihpsS~l~~~-~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~~~~~~~~~~~~ 639 (650)
+|++.+.|.|.++++|..++|||+|+|++. .|+||||||++.|++.||++||.|+|+||.|++|-+|+.++-...+.|.
T Consensus 905 ~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel~~T~keym~cvT~v~~~wl~E~gp~~y~ik~~~~se~k~ 984 (1042)
T KOG0924|consen 905 AARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHELLMTTKEYMQCVTSVSPEWLAELGPMFYSIKEAVTSEHKH 984 (1042)
T ss_pred HHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHHHHhHHHHHHHHhhCCHHHHHHhCceeEeccccccchhcc
Confidence 999999999999999999999999999988 8999999999999999999999999999999999999887766666666
Q ss_pred ccc
Q 041899 640 PRV 642 (650)
Q Consensus 640 ~~~ 642 (650)
|.+
T Consensus 985 ~~~ 987 (1042)
T KOG0924|consen 985 PVV 987 (1042)
T ss_pred ccc
Confidence 554
No 4
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-137 Score=1028.59 Aligned_cols=629 Identities=54% Similarity=0.910 Sum_probs=602.4
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+++.|..||+|.++.+.++.+.+|+.++++|+||||||||+|+++.+......+.|.|+||+|.+|.++|.|+++||+..
T Consensus 39 ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~ 118 (699)
T KOG0925|consen 39 ILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVT 118 (699)
T ss_pred HHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccc
Confidence 67899999999999999999999999999999999999999999998877666789999999999999999999999999
Q ss_pred cCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 82 LGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 82 ~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+|..|||.++|+++.+++|-+.|||+|||+|+.+++|.+..|++||+||+|||++.+|.++++++++...++++|+|+||
T Consensus 119 lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmS 198 (699)
T KOG0925|consen 119 LGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMS 198 (699)
T ss_pred cchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH
Q 041899 162 ATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI 241 (650)
Q Consensus 162 AT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~ 241 (650)
||++.++|+.||+++|++.++| .+||+++|.+.++.+|+++++..++++|..+.+|+||||+++.++|+.+++.+....
T Consensus 199 atl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~ 277 (699)
T KOG0925|consen 199 ATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREV 277 (699)
T ss_pred cccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC-----CcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcc
Q 041899 242 RKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-----ARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGME 316 (650)
Q Consensus 242 ~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-----~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~ 316 (650)
..++...+...+.|+| +.+|.++|+..+.. .+||+|+||++|+++++++|.+|||.|+.|+++|||+-+.+
T Consensus 278 ~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRve 353 (699)
T KOG0925|consen 278 DNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVE 353 (699)
T ss_pred HhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeee
Confidence 8888888899999999 66788898877532 48999999999999999999999999999999999999999
Q ss_pred cceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHH
Q 041899 317 SLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQE 396 (650)
Q Consensus 317 ~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~ 396 (650)
+|...|+|++++.||+|||||+.||+||+||+++.|...|.+.+.|||+|++|.+++|++|.+|++++..|+|+|||.++
T Consensus 354 sllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPE 433 (699)
T KOG0925|consen 354 SLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPE 433 (699)
T ss_pred eeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCc-chHHHHHH
Q 041899 397 LLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPK-NKKFLADN 475 (650)
Q Consensus 397 ~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~-~~~~~~~~ 475 (650)
++.+|++.|..++|+|++|+||++|..||+||+||.+||||+.++.|.|.+|+++|+||||+ +..|++|. +.+..++.
T Consensus 434 tLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsv-PncFvRp~~~a~kaAde 512 (699)
T KOG0925|consen 434 TLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSV-PNCFVRPTSSASKAADE 512 (699)
T ss_pred HHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccC-CccccCCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 78999998 67788899
Q ss_pred HHhcccCCCCCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCc----ccHHHHHH
Q 041899 476 ARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSL----CNLEAMKK 551 (650)
Q Consensus 476 ~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~----~~~~~~~~ 551 (650)
+++.|.+.+ |||+|++|+|++|++++...+||++||||+++|+.|.++|.||.++|++++++..+.. ++...|+|
T Consensus 513 ak~~faH~d-GDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirK 591 (699)
T KOG0925|consen 513 AKETFAHID-GDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRK 591 (699)
T ss_pred HHHHhccCC-cchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHH
Confidence 999999865 9999999999999999989999999999999999999999999999999999887543 45668999
Q ss_pred HHHhcccccceEEccCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHcCccceeee
Q 041899 552 AIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYMLKD 631 (650)
Q Consensus 552 ~~~~g~~~~va~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~~~~ 631 (650)
|+++|||++||+..++|.|.++++++.|++||++++. ++|+||+|+|++.|+|+|||.||.|.|+||.+++|+||....
T Consensus 592 ALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~-~~PeWVlyneFvlt~~N~ir~vt~I~pewlv~laP~YydlsN 670 (699)
T KOG0925|consen 592 ALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD-HKPEWVLYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSN 670 (699)
T ss_pred HHHHHHHHHHHhhccCCceEEEecCceEEeccccccC-CCCCeEEEeeEEeeccceeeeecccCHHHHHHhchhhccccc
Confidence 9999999999999988899999999999999999985 579999999999999999999999999999999999998777
Q ss_pred ecccccc
Q 041899 632 VEDLRKK 638 (650)
Q Consensus 632 ~~~~~~~ 638 (650)
+...+.|
T Consensus 671 fp~~e~k 677 (699)
T KOG0925|consen 671 FPPSEAK 677 (699)
T ss_pred CCchHHH
Confidence 7666544
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.7e-120 Score=1042.32 Aligned_cols=628 Identities=37% Similarity=0.641 Sum_probs=576.7
Q ss_pred hhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 4 KERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 4 ~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
..+..||++.+++++++++.+++++||+|+|||||||++|+++++.+....+.|+|++|+|.+|.++|.+++++++..+|
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 45788999999999999999999999999999999999999999876655568999999999999999999999999999
Q ss_pred cEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 84 HEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 84 ~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
..|||.++++++.+.+++|+|+|+|+|++.+..++.+++|++|||||||||++++|+++++++.+...++++|+|+||||
T Consensus 148 ~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKvILmSAT 227 (1294)
T PRK11131 148 GCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSAT 227 (1294)
T ss_pred ceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceEEEeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred CChHHHHhhhCCCCccccCCcccceeEEEecCCCC------chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 041899 164 LDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPES------NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEIL 237 (650)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L 237 (650)
++.+.|.++|+++|++.++|+.|||+++|.+.... +++...+..+..++ ..+.|++|||+||..+|+.+++.|
T Consensus 228 id~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L 306 (1294)
T PRK11131 228 IDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGEREIRDTADAL 306 (1294)
T ss_pred CCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999876432 23333333333333 345799999999999999999999
Q ss_pred HHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccc
Q 041899 238 KERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMES 317 (650)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~ 317 (650)
.+. ..+...+.++||+|+.++|.++|+. .|.++||||||++|+|||||+|+||||+|++|.+.||+.+|++.
T Consensus 307 ~~~------~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~ 378 (1294)
T PRK11131 307 NKL------NLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQR 378 (1294)
T ss_pred Hhc------CCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCccc
Confidence 764 1234668999999999999999986 57899999999999999999999999999999999999999999
Q ss_pred ceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHH
Q 041899 318 LLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQEL 397 (650)
Q Consensus 318 l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~ 397 (650)
|...|+|+++|.||+|||||.++|.||+||++++|. .+++++.|||+|++|.+++|+++++|+.++..|+|++||+.++
T Consensus 379 Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~-~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~ 457 (1294)
T PRK11131 379 LPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFL-SRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 457 (1294)
T ss_pred CCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHH-hhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHH
Confidence 999999999999999999999999999999999985 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCC-----CCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHH
Q 041899 398 LRKALELLYALGALNQV-----GELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL 472 (650)
Q Consensus 398 i~~a~~~L~~~g~l~~~-----~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~ 472 (650)
+..|++.|.++||||.+ ++||++|+.|++||+||++||||+.|..++|++++++|||+||+ .++|.+|.+++..
T Consensus 458 i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv-~dpf~~p~~~~~~ 536 (1294)
T PRK11131 458 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSI-QDPRERPMDKQQA 536 (1294)
T ss_pred HHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcccCCchhHHH
Confidence 99999999999999864 57999999999999999999999999999999999999999999 6799999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHhhcC------cchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccH
Q 041899 473 ADNARMNFYQGDAGDHIALLNVYNSWKEND------YSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNL 546 (650)
Q Consensus 473 ~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~ 546 (650)
++..+++|.. ..|||++++|+|+.|.+.. ..++||++||||+.+|+++.+++.||.+++++++++.++++.++
T Consensus 537 a~~~~~~f~~-~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~ 615 (1294)
T PRK11131 537 SDEKHRRFAD-KESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY 615 (1294)
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccH
Confidence 9999999986 4699999999999997532 12579999999999999999999999999999999888777889
Q ss_pred HHHHHHHHhcccccceEEccCC-CEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHcCc
Q 041899 547 EAMKKAIISGFLLHTARLQKNG-SYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPH 625 (650)
Q Consensus 547 ~~~~~~~~~g~~~~va~~~~~~-~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~ 625 (650)
+.|++||++||+.|||+...++ .|.+. .+..++|||+|+|++++|+||||+|++.|++.|+|+|+.|+|+||.+++|+
T Consensus 616 ~~i~~all~G~~~nva~~~~~~~~y~~~-~~~~~~ihP~S~L~~~~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~ 694 (1294)
T PRK11131 616 REIHTALLTGLLSHIGMKDAEKQEYTGA-RNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQH 694 (1294)
T ss_pred HHHHHHHHhhcHHHHeeccCCCCeEEcc-CCcEEEEcCCccccCCCCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHH
Confidence 9999999999999999987665 57754 478899999999999999999999999999999999999999999999999
Q ss_pred cceeeeecccccccccccC
Q 041899 626 YYMLKDVEDLRKKMPRVAG 644 (650)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~ 644 (650)
++.....+.||+|..+++.
T Consensus 695 l~~~~y~ePhw~~~~g~v~ 713 (1294)
T PRK11131 695 LIKRSYSEPHWEKAQGAVM 713 (1294)
T ss_pred hccccCCCCcccccCCeEE
Confidence 9999999999998666554
No 6
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.7e-117 Score=1018.99 Aligned_cols=630 Identities=40% Similarity=0.671 Sum_probs=576.8
Q ss_pred hhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 4 KERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 4 ~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.++..||++.+++++++++.+++++||+|+|||||||++|+++++.+....++|+|++|||.+|.++|+|+++++|.++|
T Consensus 61 ~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG 140 (1283)
T TIGR01967 61 RYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLG 140 (1283)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcc
Confidence 45678999999999999999999999999999999999999999987666679999999999999999999999999999
Q ss_pred cEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 84 HEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 84 ~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
..|||.++++++.+.+++|.|+|+|+|++++..++.+++|++|||||+|||++++|+++++++.+...++++|+|+||||
T Consensus 141 ~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 141 EKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred eEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CChHHHHhhhCCCCccccCCcccceeEEEecCCCC------chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 041899 164 LDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPES------NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEIL 237 (650)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L 237 (650)
++.+.|++||+++|++.++|+.||++++|.+.... ++.......+..+.. ...|+||||+||..+|+.+++.|
T Consensus 221 ld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L 299 (1283)
T TIGR01967 221 IDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEIL 299 (1283)
T ss_pred cCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999865321 233444444444433 35699999999999999999999
Q ss_pred HHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccc
Q 041899 238 KERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMES 317 (650)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~ 317 (650)
.+.. .+++.+.++||+|+.++|.++|+.+ +.++||||||++|+|||||+|++|||+|+.|.+.||+.+|++.
T Consensus 300 ~~~~------~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~ 371 (1283)
T TIGR01967 300 RKRN------LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQR 371 (1283)
T ss_pred HhcC------CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccc
Confidence 8641 2357899999999999999999865 3589999999999999999999999999999999999999999
Q ss_pred ceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHH
Q 041899 318 LLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQEL 397 (650)
Q Consensus 318 l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~ 397 (650)
|...|+|+++|.||+|||||.++|.||+||++++|. .+++++.|||+|++|.+++|+++++|+.++.+|+|++||+.++
T Consensus 372 L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~-~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~ 450 (1283)
T TIGR01967 372 LPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFN-SRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRA 450 (1283)
T ss_pred cCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHH-hhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHH
Confidence 999999999999999999999999999999999985 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCC---CccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHH
Q 041899 398 LRKALELLYALGALNQVG---ELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLAD 474 (650)
Q Consensus 398 i~~a~~~L~~~g~l~~~~---~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~ 474 (650)
+..|++.|..+||||.+| +||++|+.|++||+||++||||+.|..++|++++++|||+||+ .++|.+|.+++..++
T Consensus 451 i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~-~dp~~~p~~~~~~a~ 529 (1283)
T TIGR01967 451 IRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSI-QDPRERPMEKQQAAD 529 (1283)
T ss_pred HHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcC-CCcCCCcchhHHHHH
Confidence 999999999999999998 7999999999999999999999999999999999999999999 678999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHHHHHhhcC------cchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHH
Q 041899 475 NARMNFYQGDAGDHIALLNVYNSWKEND------YSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEA 548 (650)
Q Consensus 475 ~~~~~~~~~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~ 548 (650)
..++.|.. ..|||++++|+|+.|.+.. ...+||++||||+.+|+++.++++||.++++++++..+++..+.+.
T Consensus 530 ~~~~~f~~-~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~ 608 (1283)
T TIGR01967 530 QAHARFKD-PRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDA 608 (1283)
T ss_pred HHHHHhcC-CCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHH
Confidence 99999976 4699999999999997532 2358999999999999999999999999999988877666667778
Q ss_pred HHHHHHhcccccceEEccCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHcCccce
Q 041899 549 MKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYM 628 (650)
Q Consensus 549 ~~~~~~~g~~~~va~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~ 628 (650)
+.+|+++||++|||++++.|.|.+ .+|..++|||+|+|++.+|+||||+|++.|++.||+.+++|+|+||.+++|+++.
T Consensus 609 i~~~l~~g~~~~iA~~~~~~~y~~-~~g~~~~ihP~S~L~~~~p~wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~ 687 (1283)
T TIGR01967 609 IHKALLSGLLSQIGMKDEKHEYDG-ARGRKFHIFPGSPLFKKPPKWVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIK 687 (1283)
T ss_pred HHHHHHHhhHHHHheeCCCCcEEe-cCCcEEEECCCccccCCCCCEEEEeeecccchheEeeeccCCHHHHHHHhHHHhE
Confidence 999999999999999887778995 5578999999999998889999999999999999999999999999999999999
Q ss_pred ee-eecccccccccccCCC
Q 041899 629 LK-DVEDLRKKMPRVAGRP 646 (650)
Q Consensus 629 ~~-~~~~~~~~~~~~~~~~ 646 (650)
.. ....|+++.+++.++.
T Consensus 688 ~~~~~~~w~~~~g~v~a~~ 706 (1283)
T TIGR01967 688 KNYFEPHWEKKRGQVMAYE 706 (1283)
T ss_pred eccCceeeccCCCeEEEEE
Confidence 88 5566666777777663
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-113 Score=953.83 Aligned_cols=618 Identities=47% Similarity=0.750 Sum_probs=565.7
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+.+.|..||++..+.++++++.+++++||+||||||||||+|+++++.++..+++|+|++|||.+|.++|+|+++++|.+
T Consensus 42 ~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 42 ILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred hhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 46778999999999999999999999999999999999999999999998778899999999999999999999999999
Q ss_pred cCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCC-CceEEEE
Q 041899 82 LGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS-DLKLLIS 160 (650)
Q Consensus 82 ~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~-~~kii~~ 160 (650)
+|..|||.+||++.++++|+|.|||+|+|+++++.|+.|+.|++|||||+|||++++|++++++++++..++ |+|+|+|
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999877554 8999999
Q ss_pred ccCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCch-HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHH
Q 041899 161 SATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNY-IDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKE 239 (650)
Q Consensus 161 SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~ 239 (650)
|||+|.+.|++||+++|++.++|+.|||+++|.+....++ ++..+...+.++...+.|+||||+||.++|+.+++.|.+
T Consensus 202 SATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 202 SATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred ecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998888888 899999999999999999999999999999999999987
Q ss_pred HHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccce
Q 041899 240 RIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLL 319 (650)
Q Consensus 240 ~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~ 319 (650)
. .++ +.+.++|+||.|+.++|.++|+..+.|++|||+||||||+|+|||+|+||||+|+.|.++||+.+|++.|.
T Consensus 282 ~--~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~ 356 (845)
T COG1643 282 A--ELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLE 356 (845)
T ss_pred c--ccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeee
Confidence 1 121 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCC-CCCCCCCCCCChHHHH
Q 041899 320 VYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGID-DLLNFDFLDSPPQELL 398 (650)
Q Consensus 320 ~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~-~~~~~~~~~~p~~~~i 398 (650)
..|+|++++.||+|||||++||+||+||++++|. .++.++.|||+|++|++++|++++||+. |+..|+|+|||+..++
T Consensus 357 ~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~-~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i 435 (845)
T COG1643 357 TEPISKASADQRAGRAGRTGPGICYRLYSEEDFL-AFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAI 435 (845)
T ss_pred EEEechhhhhhhccccccCCCceEEEecCHHHHH-hcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHH
Confidence 9999999999999999999999999999999996 8999999999999999999999999995 9999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCC--CccccCcchHH---HH
Q 041899 399 RKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGN--SVFYRPKNKKF---LA 473 (650)
Q Consensus 399 ~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~--~~f~~~~~~~~---~~ 473 (650)
..|++.|..+||+|.+|.||++|+.|+.||+||++|+||+.+..++|++++++|||+||+.+ +.|..+.+... ..
T Consensus 436 ~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~ 515 (845)
T COG1643 436 QAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQ 515 (845)
T ss_pred HHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999954 15777666544 33
Q ss_pred HHHH-hcccC--CCCCCHHHHHHHHHHHhhcC------cchhhHHhhcCChHHHHHHHHHHHHHHHHHHH-hCCcccCCc
Q 041899 474 DNAR-MNFYQ--GDAGDHIALLNVYNSWKEND------YSKQWCYDNFIQFRSMKHARDIRDQLTCLVER-VGIELTSSL 543 (650)
Q Consensus 474 ~~~~-~~~~~--~~~sD~~~~l~~~~~~~~~~------~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~-~~~~~~~~~ 543 (650)
+..+ ..+.. ...+||++++++|..|.... ...+||..++++.++|.++..++.++.....+ .+.......
T Consensus 516 ~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~ 595 (845)
T COG1643 516 DLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAE 595 (845)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcc
Confidence 3333 22322 24699999999999998765 45789999999999999999999988877665 332211111
Q ss_pred ------------------ccHHHHHHHHHhcccccceEEccCCC-EEEeecCCeEEECCCC-CCCCCCCcEEEEeeeccC
Q 041899 544 ------------------CNLEAMKKAIISGFLLHTARLQKNGS-YWTVKHPQKVHVHPSS-GLAQVPKRWVIYHELVLT 603 (650)
Q Consensus 544 ------------------~~~~~~~~~~~~g~~~~va~~~~~~~-y~~~~~~~~~~ihpsS-~l~~~~~~~ivy~e~~~t 603 (650)
..++.+.+++++|++.|++++...+. |.+..++..+++||+| ......++|+.|++.+.+
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~~~~~~ 675 (845)
T COG1643 596 IDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYAEFLRT 675 (845)
T ss_pred cCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHHHHHHH
Confidence 13678999999999999999887664 8988888999999999 566668999999999999
Q ss_pred chhheh-----------hccccCHHHHHhHcCc
Q 041899 604 TKEYMR-----------QVTELKPEWLFEIAPH 625 (650)
Q Consensus 604 ~k~~i~-----------~~t~i~~~wL~~~~~~ 625 (650)
++.|++ .++++.++||.+.++.
T Consensus 676 ~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~~~ 708 (845)
T COG1643 676 RKGYLREGRGERWPDVQTLIELLKLWLKEQVKG 708 (845)
T ss_pred HHHHHhhcccccCcccchHhhhHHHhhhhhccc
Confidence 999999 6999999999998873
No 8
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.1e-111 Score=883.87 Aligned_cols=629 Identities=43% Similarity=0.672 Sum_probs=563.0
Q ss_pred ChHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC-----CCeEEEecchHHHHHHHHHHHH
Q 041899 1 MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK-----HGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 1 ~l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~ilv~~P~r~la~q~~~~v~ 75 (650)
|+++.|..|||...-++|+++|..|.++||||.||||||||+||+++++++.. ++.|.+++|||.+|..+|+||+
T Consensus 247 EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa 326 (1172)
T KOG0926|consen 247 EIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVA 326 (1172)
T ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999998864 3589999999999999999999
Q ss_pred HHhCCccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC---
Q 041899 76 REMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR--- 152 (650)
Q Consensus 76 ~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~--- 152 (650)
.++|. .|..|||++||+...++.|.|.|||+|+|++.+.+|..|..|++||+||||||++++|++++++.++..+|
T Consensus 327 ~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 327 FELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred HHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHH
Confidence 99998 89999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred -------CCceEEEEccCCChHHHHh---hhC-CCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEE
Q 041899 153 -------SDLKLLISSATLDAEKFSA---YFN-FAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDIL 221 (650)
Q Consensus 153 -------~~~kii~~SAT~~~~~~~~---~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 221 (650)
..+|+|+||||+..++|.+ .|. ..|++.++.|+|||.+||......+|+..+....+.||...+.|.||
T Consensus 406 ~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~IL 485 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGIL 485 (1172)
T ss_pred hhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEE
Confidence 2689999999998888874 443 46799999999999999999999999999999999999999999999
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhh---------------------------------------------------------
Q 041899 222 VFLTGQEEIETVEEILKERIRKL--------------------------------------------------------- 244 (650)
Q Consensus 222 VF~~~~~~i~~~~~~L~~~~~~~--------------------------------------------------------- 244 (650)
||+.|+.++..+++.|++.++..
T Consensus 486 VFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~r 565 (1172)
T KOG0926|consen 486 VFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLR 565 (1172)
T ss_pred EEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhh
Confidence 99999999999999999874200
Q ss_pred --------------c-------------------CCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCc
Q 041899 245 --------------G-------------------TKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLT 291 (650)
Q Consensus 245 --------------~-------------------~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gid 291 (650)
+ .....+.++|+|+-|+.++|.++|+..+.|.+-+|||||+||+++|
T Consensus 566 aa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLT 645 (1172)
T KOG0926|consen 566 AAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLT 645 (1172)
T ss_pred hhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccc
Confidence 0 0011578999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhH
Q 041899 292 IDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLAN 371 (650)
Q Consensus 292 ip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~ 371 (650)
||+|+||||+|+.|+..||..+|++.+...|+|++++.||+|||||+|||.|||||+...|.+.+.++..|||++.+.++
T Consensus 646 IPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~ 725 (1172)
T KOG0926|consen 646 IPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVES 725 (1172)
T ss_pred cCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHH
Q 041899 372 VILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIIT 451 (650)
Q Consensus 372 ~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~ 451 (650)
++|++++++|.++.+|+|++||...+++.|.+.|..+||||.+|.||++|+.||.||+.|+++|||+.+...+|+.-.+.
T Consensus 726 lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~ 805 (1172)
T KOG0926|consen 726 LVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIA 805 (1172)
T ss_pred HHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCcccc--------------CcchH-----------H-------HHHHHHhcccCCCCCCHHHHHHHHHHHh
Q 041899 452 IAALLSVGNSVFYR--------------PKNKK-----------F-------LADNARMNFYQGDAGDHIALLNVYNSWK 499 (650)
Q Consensus 452 i~a~ls~~~~~f~~--------------~~~~~-----------~-------~~~~~~~~~~~~~~sD~~~~l~~~~~~~ 499 (650)
++++||+. .+|+. |.++. . ....++.+|... .||-|+++.+..++.
T Consensus 806 lvsaLsv~-e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l-~sd~l~Ll~Av~a~e 883 (1172)
T KOG0926|consen 806 LVSALSVY-EVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNL-DSDALVLLSAVSAAE 883 (1172)
T ss_pred HHHHHhcc-chhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccC-CccHHHHHHHHHHHH
Confidence 99999994 44432 11100 0 111234455543 489999999999988
Q ss_pred hcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCc-------ccC-Cc--ccHHHHHHHHHhcccccceEEccCCC
Q 041899 500 ENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIE-------LTS-SL--CNLEAMKKAIISGFLLHTARLQKNGS 569 (650)
Q Consensus 500 ~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~-------~~~-~~--~~~~~~~~~~~~g~~~~va~~~~~~~ 569 (650)
...+...||..|||..++|.++.++|.||..++++.++. +.. .+ .....+++.|||||.++||++.+-..
T Consensus 884 y~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~ 963 (1172)
T KOG0926|consen 884 YAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATE 963 (1172)
T ss_pred hhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 887777899999999999999999999999988754321 111 11 23446888999999999998765555
Q ss_pred EEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehh-ccccCHHHHHhHcCccceeeee
Q 041899 570 YWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQ-VTELKPEWLFEIAPHYYMLKDV 632 (650)
Q Consensus 570 y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~-~t~i~~~wL~~~~~~~~~~~~~ 632 (650)
|-...-+.+++||++|+|++..|+||+|.+++.++..||.. ++.|.|+||...++.++..++.
T Consensus 964 y~~~~i~~~~fl~~~svl~~~ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~slcn~~e~ 1027 (1172)
T KOG0926|consen 964 YDAAKIQEPVFLHRWSVLINSAPELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSLCNFSEP 1027 (1172)
T ss_pred cchhhhcCceeeeehhhhhccCccceehhhhhhcCCcccccceEEEchHHHHhhhhhhcccccc
Confidence 77666677899999999999999999999999998876555 9999999999999988765443
No 9
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.1e-110 Score=924.90 Aligned_cols=624 Identities=37% Similarity=0.597 Sum_probs=559.4
Q ss_pred ChHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCC--eEEEecchHHHHHHHHHHHHHHh
Q 041899 1 MLQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHG--KVGCTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 1 ~l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~--~ilv~~P~r~la~q~~~~v~~~~ 78 (650)
+++..|+.||++.+++++++++.++++++|+|.||||||||+||++++.....++ +|+|+||||+.|.++|+||++|+
T Consensus 164 ~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER 243 (924)
T KOG0920|consen 164 EMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKER 243 (924)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999987544333 89999999999999999999999
Q ss_pred CCccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 79 GVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 79 ~~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
+...|..|||++|.++..+..+.+.|||+|+|++.++.++.+.+++|||+||+|||+.++|+++.+++.++..+|++|+|
T Consensus 244 ~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvI 323 (924)
T KOG0920|consen 244 GESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVI 323 (924)
T ss_pred ccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCChHHHHhhhCCCCccccCCcccceeEEEecC-----------------CCCc--------------hHHHHHHH
Q 041899 159 ISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKA-----------------PESN--------------YIDAAIVT 207 (650)
Q Consensus 159 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~~--------------~~~~~~~~ 207 (650)
+||||+|++.|.+||+++|++.++|++|||..+|..+ ++.+ ..+.....
T Consensus 324 LMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~l 403 (924)
T KOG0920|consen 324 LMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDL 403 (924)
T ss_pred EeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHH
Confidence 9999999999999999999999999999999887541 1111 01112223
Q ss_pred HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 041899 208 TLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAE 287 (650)
Q Consensus 208 ~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e 287 (650)
+..++.....|.||||+||.++|..+...|......... ..+.+.++|+.|+..+|+.+|...+.|.+|||+|||+||
T Consensus 404 i~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~--~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAE 481 (924)
T KOG0920|consen 404 IEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS--LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAE 481 (924)
T ss_pred HHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc--cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHh
Confidence 334455555799999999999999999999764322211 368999999999999999999999999999999999999
Q ss_pred ccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCcccccc
Q 041899 288 TSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRT 367 (650)
Q Consensus 288 ~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~ 367 (650)
+|||||+|.||||+|+.|++.||+..+++.|...|+|++++.||+|||||..+|.||+||++..|+..+..+++|||+|.
T Consensus 482 TSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~ 561 (924)
T KOG0920|consen 482 TSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRT 561 (924)
T ss_pred hcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999766666999999999
Q ss_pred ChhHHHHHHHhcCCCCCCCC--CCCCCChHHHHHHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccC
Q 041899 368 NLANVILILKNLGIDDLLNF--DFLDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKC 445 (650)
Q Consensus 368 ~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c 445 (650)
+|.+++|++|.+++..+..| ..++||+.+++..|+..|..+||++.+++||++|+.++.+|+||++|||++.|..|+|
T Consensus 562 pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~c 641 (924)
T KOG0920|consen 562 PLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGC 641 (924)
T ss_pred hHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccc
Confidence 99999999999998877665 6799999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhcCCCccccCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHhhcC-----cchhhHHhhcCChHHHHH
Q 041899 446 SNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKEND-----YSKQWCYDNFIQFRSMKH 520 (650)
Q Consensus 446 ~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~-----~~~~~c~~~~l~~~~l~~ 520 (650)
++++++|||+|+. .+||+.|.+++..++..++.|..+..|||++++++|+.|.... ...+||++|||+..+|++
T Consensus 642 Ldp~l~iaa~Ls~-k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~ 720 (924)
T KOG0920|consen 642 LDPALTIAAALSF-KSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQE 720 (924)
T ss_pred cchhhhHHHHhcc-CCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHH
Confidence 9999999999997 7899999999999999999998777899999999999998643 346899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCccc------------CCcccHHHHHHHHHhcccccceEEcc---CC---CEEEeecCCeEEEC
Q 041899 521 ARDIRDQLTCLVERVGIELT------------SSLCNLEAMKKAIISGFLLHTARLQK---NG---SYWTVKHPQKVHVH 582 (650)
Q Consensus 521 ~~~~~~ql~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~va~~~~---~~---~y~~~~~~~~~~ih 582 (650)
+..++.|+.+.+.++++... .++.+.+.+++++|+|+|||+|+... .. .|.+- +...+.||
T Consensus 721 i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~-~~~~v~i~ 799 (924)
T KOG0920|consen 721 ISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTK-ADGRVIIH 799 (924)
T ss_pred HHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecC-CceeEEEe
Confidence 99999999999998876432 13357788999999999999998763 22 34322 22479999
Q ss_pred CCCCCCCC---CCcEEEEeeeccCch-hhehhccccCHHHHHhHcCccce
Q 041899 583 PSSGLAQV---PKRWVIYHELVLTTK-EYMRQVTELKPEWLFEIAPHYYM 628 (650)
Q Consensus 583 psS~l~~~---~~~~ivy~e~~~t~k-~~i~~~t~i~~~wL~~~~~~~~~ 628 (650)
|+|++.+. ..+|++|++.+.|++ .|+|++|.+++-.++.+++..+.
T Consensus 800 ~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~~~~ 849 (924)
T KOG0920|consen 800 PSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGGIST 849 (924)
T ss_pred cchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCCcee
Confidence 99998764 335999999999999 99999999999999998886653
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.5e-96 Score=832.72 Aligned_cols=591 Identities=33% Similarity=0.510 Sum_probs=513.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
|||+.+..++++++.+++++|++|+|||||||++|+++++... .+++|+|++|||++|.|++++++++++..+|..|||
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 7999999999999999999999999999999999999998753 456999999999999999999999999999999999
Q ss_pred eecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChH
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAE 167 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~ 167 (650)
.+++++..+.+++|+|+|+|+|++.+..++.++++++|||||+|||++++|+++++++.+.. .++++|+|+||||++.+
T Consensus 80 ~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~ 159 (819)
T TIGR01970 80 RVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE 159 (819)
T ss_pred EEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH
Confidence 99999988889999999999999999999999999999999999999999999998887765 67899999999999999
Q ss_pred HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCC
Q 041899 168 KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTK 247 (650)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~ 247 (650)
.+.+||++++++.++|+.|||+++|......+++...+...+........|++|||+||.++++.+++.|.+.+.
T Consensus 160 ~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----- 234 (819)
T TIGR01970 160 RLSSLLPDAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLD----- 234 (819)
T ss_pred HHHHHcCCCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcC-----
Confidence 999999999999999999999999988765555444333333333333478999999999999999999986431
Q ss_pred CCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHh
Q 041899 248 IGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKAS 327 (650)
Q Consensus 248 ~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~ 327 (650)
.++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+.||+.+|++.|...|+|+++
T Consensus 235 -~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 235 -SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred -CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 041899 328 AMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYA 407 (650)
Q Consensus 328 ~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~ 407 (650)
|.||+|||||.++|.||+||+++++ ..+.++..|||++++|.+++|+++.+|+.++..|+|+|||+.+++..|++.|..
T Consensus 314 a~QR~GRAGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~ 392 (819)
T TIGR01970 314 ATQRAGRAGRLEPGVCYRLWSEEQH-QRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQR 392 (819)
T ss_pred HHhhhhhcCCCCCCEEEEeCCHHHH-HhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999988 479999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHHHHHhcccCCCCCC
Q 041899 408 LGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGD 487 (650)
Q Consensus 408 ~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~~~~~~sD 487 (650)
+||||.+|+||++|+.|++||+||++|+||+.|..++|.+++++|||+|++.+ ++- +..+|
T Consensus 393 lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~-~~~------------------~~~~d 453 (819)
T TIGR01970 393 LGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERG-LPR------------------QGGAD 453 (819)
T ss_pred CCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCC-CCC------------------CCccc
Confidence 99999999999999999999999999999999999999999999999999943 221 01368
Q ss_pred HHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCc-cc-CCcccHHHHHHHHHhcccccceEEc
Q 041899 488 HIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIE-LT-SSLCNLEAMKKAIISGFLLHTARLQ 565 (650)
Q Consensus 488 ~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~va~~~ 565 (650)
....+..++.. ....| ..+.++.+|+.+.+ +.. .. ....+. ....+++.||+++||+++
T Consensus 454 ~~~~~~~~~~~-----~~~~~----------~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~g~lla~a~pdria~~r 514 (819)
T TIGR01970 454 LMNRLHRLQQG-----RQGRG----------QRAQQLAKKLRRRL---RFSQADSGAIASH-ALGLLLALAFPDRIAKRR 514 (819)
T ss_pred HHHHHHHHhhc-----chhhH----------HHHHHHHHHHHHHh---CcCcCCCcccccc-hHhHHHhhhChHhheecc
Confidence 76666555321 01111 12344445554332 111 10 111111 255678889999999877
Q ss_pred cC-CCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccC---chhhehhccccCHHHHHhHcCccceeeeeccccccccc
Q 041899 566 KN-GSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLT---TKEYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPR 641 (650)
Q Consensus 566 ~~-~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t---~k~~i~~~t~i~~~wL~~~~~~~~~~~~~~~~~~~~~~ 641 (650)
++ |.|. +.+|..+.+++.|.|.+ .+|++..++..+ ....|+.+++|+++||.+.+++.+..++...|+++.++
T Consensus 515 ~~~~~y~-l~~G~~~~l~~~~~l~~--~~~l~~a~~~~~~~~~~~~i~~a~~i~~~~~~~~~~~~~~~~~~~~wd~~~~~ 591 (819)
T TIGR01970 515 GQPGRYQ-LANGRGAVLSAEDALAR--EPWLVAADLGEGQGKTAARILLAAPVDEALLRQVLPDLVVQVDQVDWDETKGR 591 (819)
T ss_pred CCCCeEE-CCCCCeeEeCCCCcccC--CCeEEEEEeeccCCccccceeeeccCCHHHHHHHhHHHceEEEEEEEecCCCe
Confidence 54 4687 89999999999999987 699999999744 23579999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 041899 642 VAGRPWL 648 (650)
Q Consensus 642 ~~~~~~~ 648 (650)
+.+++.+
T Consensus 592 v~a~~~~ 598 (819)
T TIGR01970 592 LVAERQL 598 (819)
T ss_pred EEEEEEE
Confidence 8887654
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.5e-96 Score=833.34 Aligned_cols=583 Identities=33% Similarity=0.526 Sum_probs=508.6
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.|||+.+..++++++.++++++++|||||||||++|+++++.... +++|+|++|||++|.|++++++++++..+|..||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 599999999999999999999999999999999999999986443 4699999999999999999999999999999999
Q ss_pred eeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCCh
Q 041899 88 YSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDA 166 (650)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~ 166 (650)
|.+++++..+..++|+|+|+|+|++.+..++.++++++|||||+|||++++|+++++++.+.. .++++|+|+||||++.
T Consensus 82 y~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~ 161 (812)
T PRK11664 82 YRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDN 161 (812)
T ss_pred EEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCH
Confidence 999999988889999999999999999999999999999999999999999999998887765 5789999999999999
Q ss_pred HHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcC
Q 041899 167 EKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGT 246 (650)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~ 246 (650)
+.+.+||++++++.++|+.||++++|.+.+..++....+...+........|++|||+||.++++.+++.|.+...
T Consensus 162 ~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~---- 237 (812)
T PRK11664 162 DRLQQLLPDAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVA---- 237 (812)
T ss_pred HHHHHhcCCCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhcc----
Confidence 9999999999999999999999999988776666654444334433344579999999999999999999986421
Q ss_pred CCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHH
Q 041899 247 KIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKA 326 (650)
Q Consensus 247 ~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~ 326 (650)
.++.+.++||+|+.++|.++++.|++|+++||||||++|+|||||+|++|||+|+.|.+.||+.+|++.|...++|++
T Consensus 238 --~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSka 315 (812)
T PRK11664 238 --SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQA 315 (812)
T ss_pred --CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechh
Confidence 267899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 041899 327 SAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLY 406 (650)
Q Consensus 327 ~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~ 406 (650)
+|.||+|||||.++|.||+||+++++ ..+.++..|||+|++|++++|.++++|+.++.+|+|+|||+.+++++|++.|.
T Consensus 316 sa~QR~GRaGR~~~G~cyrL~t~~~~-~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~ 394 (812)
T PRK11664 316 SMTQRAGRAGRLEPGICLHLYSKEQA-ERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQ 394 (812)
T ss_pred hhhhhccccCCCCCcEEEEecCHHHH-hhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998 46999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChH--HHHHHHHhhhcCCCccccCcchHHHHHHHHhcccCCC
Q 041899 407 ALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSN--EIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGD 484 (650)
Q Consensus 407 ~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~--~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~~~~~ 484 (650)
.+||||++|+||++|+.|++||+||++|+||+.|..++|.. .++.+||+|++. +. . .
T Consensus 395 ~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~-~~-----~---------------~ 453 (812)
T PRK11664 395 QLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP-PR-----S---------------G 453 (812)
T ss_pred HCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC-CC-----C---------------C
Confidence 99999999999999999999999999999999999998653 677778887762 11 0 0
Q ss_pred CCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCcccHHHHHHHHHhcccccceEE
Q 041899 485 AGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSLCNLEAMKKAIISGFLLHTARL 564 (650)
Q Consensus 485 ~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~va~~ 564 (650)
.+|....+..+. ..|+ ..+.++.+|+.+.. + . .+.+.+..++++||++|||++
T Consensus 454 ~~d~~~~l~~~~--------~~~~----------~~~~~~~~~~~~~~---~----~--~~~~~~~~~la~aypdriA~~ 506 (812)
T PRK11664 454 SSDLGVALSRKQ--------PHWQ----------QRAQQLLKRLNVRG---G----E--ADSSLIAPLLALAFPDRIARR 506 (812)
T ss_pred cccHHHHHHHHH--------HHHH----------HHHHHHHHHHHhhc---c----c--CChHHHHHHHHHHCHHHHhhh
Confidence 245444443221 1332 23445555553311 1 1 133347889999999999987
Q ss_pred ccCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCc-h--hhehhccccCHHHHHhHcCccceeeeeccccccccc
Q 041899 565 QKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTT-K--EYMRQVTELKPEWLFEIAPHYYMLKDVEDLRKKMPR 641 (650)
Q Consensus 565 ~~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~-k--~~i~~~t~i~~~wL~~~~~~~~~~~~~~~~~~~~~~ 641 (650)
++++.+..+.+|+.++|||+|.|++ .+|++++|+..++ + ..|+.+++|+++||.+.+|+.+..++...|+++..+
T Consensus 507 r~~~~~~~l~~G~~a~l~~~~~l~~--~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~~~~~~d~~~~~ 584 (812)
T PRK11664 507 RGQDGRYQLANGMGAMLDADDALSR--HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQSDTVEWDEAKGT 584 (812)
T ss_pred cCCCCeEEeeCCCeEEECCCCcccC--CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceeeeEEEEecCCCe
Confidence 6554434489999999999999987 6999999997553 3 568899999999999999999999999999999888
Q ss_pred ccCCCCC
Q 041899 642 VAGRPWL 648 (650)
Q Consensus 642 ~~~~~~~ 648 (650)
+.+|+.+
T Consensus 585 v~a~~~~ 591 (812)
T PRK11664 585 LRAWRRL 591 (812)
T ss_pred EEEEEEE
Confidence 8887654
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=7.9e-65 Score=539.09 Aligned_cols=620 Identities=29% Similarity=0.460 Sum_probs=512.7
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCC----eEEEecchHHHHHHHHHHHHHH
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHG----KVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~----~ilv~~P~r~la~q~~~~v~~~ 77 (650)
+.++|..||+..+..++++++.++++++|.+.||+||||++.+++++....++. .+.+.+|||..+.+++++++++
T Consensus 370 ~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~e 449 (1282)
T KOG0921|consen 370 ITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANE 449 (1282)
T ss_pred hhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999998655432 7899999999999999999999
Q ss_pred hCCccCcEeeeeecccccCC-CCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce
Q 041899 78 MGVKLGHEVGYSIRFEDCTS-EKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 78 ~~~~~g~~vg~~~~~~~~~~-~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 156 (650)
.++.+|.+|||++|+++..+ +...|.+||.|.+++.+.+. +..++|+|+||.|||..++|+++.+++.+....++++
T Consensus 450 r~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 450 RGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred hHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHHhhhccchhhh
Confidence 99999999999999998876 56789999999999987543 7889999999999999999999999999999999999
Q ss_pred EEEEccCCChHHHHhhhCCCCccccCCcccceeEEEecC-------------------------CCCc------------
Q 041899 157 LLISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKA-------------------------PESN------------ 199 (650)
Q Consensus 157 ii~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------------------------~~~~------------ 199 (650)
+++||||+|.+.|..||+.+|.+.+.++.+|+..+|... +..+
T Consensus 528 v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd 607 (1282)
T KOG0921|consen 528 VVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDP 607 (1282)
T ss_pred hhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccCh
Confidence 999999999999999999999999999998886554320 0000
Q ss_pred -h----------------HHHHHHHHHHHH-hcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCC
Q 041899 200 -Y----------------IDAAIVTTLEIH-ATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLP 261 (650)
Q Consensus 200 -~----------------~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 261 (650)
+ .......++... ...-.|.|+||+|++.++..++..|...-. -.......++++|+.++
T Consensus 608 ~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~--fg~~~~y~ilp~Hsq~~ 685 (1282)
T KOG0921|consen 608 SYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQE--FGQANKYEILPLHSQLT 685 (1282)
T ss_pred hhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhh--hccchhcccccchhhcc
Confidence 0 000111111111 122258899999999999999998876532 12234678999999999
Q ss_pred HHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCc
Q 041899 262 TELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPG 341 (650)
Q Consensus 262 ~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G 341 (650)
..+|.++++..+.|..|+|++|++++++++|.++.+|||++..+.+.|-....+....+.|.|+-+..||.||+||..+|
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G 765 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPG 765 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCC--CCCCCChHHHHHHHHHHHHHcCCCCCCCCccH
Q 041899 342 KCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNF--DFLDSPPQELLRKALELLYALGALNQVGELTK 419 (650)
Q Consensus 342 ~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~ 419 (650)
.|+++.+...| +.+.++..||+.|.++.+..|.+|.+.+..+..| ..+.||+.+++..+-..|..++++|.++.+|+
T Consensus 766 ~~f~lcs~arF-~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~ 844 (1282)
T KOG0921|consen 766 FCFHLCSRARF-EALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTP 844 (1282)
T ss_pred ccccccHHHHH-HHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccc
Confidence 99999999999 5799999999999999999999888766555444 66899999999999999999999999999999
Q ss_pred HHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHHHHHhcccCCCCCCHH-----HHHHH
Q 041899 420 VGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLADNARMNFYQGDAGDHI-----ALLNV 494 (650)
Q Consensus 420 lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~~~~~~~~sD~~-----~~l~~ 494 (650)
+|+.++++|+.|+++++++.+..++|...|+..|+.++.. .+|+.-..........++.|++..+|||. +.+..
T Consensus 845 lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~-~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r 923 (1282)
T KOG0921|consen 845 LGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFP-TPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYR 923 (1282)
T ss_pred hhhhhhhccCcccccceeeechhhccchhhhhhhcccccc-cccccccccccccccchhhccccccccchhhhhhhhhhH
Confidence 9999999999999999999999999999999999988873 34432111112222334455555555554 45555
Q ss_pred HHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcc--------cCC--cccHHHHHHHHHhcccccceEE
Q 041899 495 YNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIEL--------TSS--LCNLEAMKKAIISGFLLHTARL 564 (650)
Q Consensus 495 ~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~g~~~~va~~ 564 (650)
|..|..+....+||...+++...|......+.|+..+|+.+.++- +.+ +.+....+..||.++++|+|..
T Consensus 924 ~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y 1003 (1282)
T KOG0921|consen 924 EAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYY 1003 (1282)
T ss_pred HHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCcccee
Confidence 666665555678999999999999999999999999998765431 112 2344456677888999999877
Q ss_pred ccCCCEEEeecCCeEEECCCCCCC--CC-----CCcEEEEeeeccCchhhehhccccCHHHHHhHcCccce
Q 041899 565 QKNGSYWTVKHPQKVHVHPSSGLA--QV-----PKRWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHYYM 628 (650)
Q Consensus 565 ~~~~~y~~~~~~~~~~ihpsS~l~--~~-----~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~~~ 628 (650)
.....-.| .++..+-||-.|++. ++ |.+|+||.|.++|...-.+..|-|+|-.|+.++.+-.+
T Consensus 1004 ~ekrkvLt-Te~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS~K~MslVsPLQLLLF~SrKVq 1073 (1282)
T KOG0921|consen 1004 VEKRKVLT-TEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAISCKQMSLVSPLQLLLFGSRKVQ 1073 (1282)
T ss_pred ccceeEEe-ecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheecccCccccChHHHhhhhhhhcc
Confidence 65554443 445567778777764 22 67899999999999888999999999999998876553
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9e-59 Score=513.49 Aligned_cols=391 Identities=21% Similarity=0.312 Sum_probs=309.4
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc-----cC---------CCCeEEEecchHHHHHHHHHHHHHHh
Q 041899 13 HYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG-----YT---------KHGKVGCTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 13 ~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-----~~---------~~~~ilv~~P~r~la~q~~~~v~~~~ 78 (650)
..|+++++.+.+++++|++|+||||||+++||++++.. +. .+++++|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 45778889999999999999999999999999987631 11 23489999999999999999998776
Q ss_pred CCccCcEeeeeecccccCC-------CCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc
Q 041899 79 GVKLGHEVGYSIRFEDCTS-------EKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL 151 (650)
Q Consensus 79 ~~~~g~~vg~~~~~~~~~~-------~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 151 (650)
|......+...++++.... ....++++|++. ..+.++++++|||||||||+..+|+++++++.....
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 6431111122333333221 235688999763 335689999999999999999999999998876442
Q ss_pred CCCceEEEEccCC--ChHHHHhhhCCCCccccCCcc-cceeEEEecCCC-----CchHHHHHHHHHHHHh---cCCCCCE
Q 041899 152 RSDLKLLISSATL--DAEKFSAYFNFAPILRVPGRR-YPVEIHYTKAPE-----SNYIDAAIVTTLEIHA---TQASGDI 220 (650)
Q Consensus 152 ~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~i 220 (650)
. .|+++||||+ +.+.+.+||++++.+.++++. +|++++|..... .++.......+...+. ...++++
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 2 3899999999 466899999989999999985 999999976542 1222222222223222 1235799
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCC-CCCCcEEEEeCCCccccCcCCCeEEEE
Q 041899 221 LVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPT-PDGARKVVLATNIAETSLTIDGIKYVV 299 (650)
Q Consensus 221 LVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~-~~g~~kilvaT~i~e~gidip~v~~VI 299 (650)
|||+||+++++.+++.|.+.. +++.+.++||+|++.+ ++++.| ++|+++||||||+||+|||||+|++||
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~-------~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRL-------PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhc-------CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 999999999999999997652 3588999999999764 333444 689999999999999999999999999
Q ss_pred eCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccC---hhHHHHHH
Q 041899 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTN---LANVILIL 376 (650)
Q Consensus 300 d~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~---l~~~~L~l 376 (650)
|+|++|.+. +..|+ +.|+|+++|.||+|||||.++|.||+||+++++ .| |.+.+ |.+++|++
T Consensus 470 D~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~--------~p-I~ri~~~~L~~~vL~l 534 (675)
T PHA02653 470 DTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL--------KP-IKRIDSEFLHNYILYA 534 (675)
T ss_pred ECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh--------HH-HHHHhHHHHHHHHHHH
Confidence 999988763 44554 458999999999999999999999999998764 23 55555 89999999
Q ss_pred HhcCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCCCccHH--HHHhccCCCChHHHHHHHhhcc
Q 041899 377 KNLGIDDLLNFDFLDSPPQELLRKALELLYALGALNQVGELTKV--GRQMAEFPLDPMLSKMIVASDK 442 (650)
Q Consensus 377 ~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~l--G~~~~~~p~~p~~~~~l~~~~~ 442 (650)
++||++... +.|+|||+.+++.+|++.|..+||+|+ ++|.+ |+.++.+ +.||+++.|+.
T Consensus 535 k~~g~~~~~-~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 535 KYFNLTLPE-DLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGI 595 (675)
T ss_pred HHcCCCCcc-cccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccH
Confidence 999996554 459999999999999999999998764 79999 9999999 99999998853
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.6e-44 Score=408.07 Aligned_cols=432 Identities=18% Similarity=0.211 Sum_probs=298.3
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
...++++|.++++.+.++++++++||||||||+++.+++++.. ..++++++++|+++||.|.++.+.+.. ..|..++
T Consensus 20 ~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l-~~~~k~v~i~P~raLa~q~~~~~~~l~--~~g~~v~ 96 (674)
T PRK01172 20 DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETF-LAGLKSIYIVPLRSLAMEKYEELSRLR--SLGMRVK 96 (674)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHH-HhCCcEEEEechHHHHHHHHHHHHHHh--hcCCeEE
Confidence 4568999999999999999999999999999998888887653 345789999999999999999987532 2344444
Q ss_pred eeeccccc---CCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCc--cccHHHHHHHHHHhcCCCceEEEEc
Q 041899 88 YSIRFEDC---TSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTL--STDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 88 ~~~~~~~~---~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
..+..... .....+|+++|++.+...+..++ .+.++++||+||+|..+- ....+..++..+...+++.|+|+||
T Consensus 97 ~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lS 176 (674)
T PRK01172 97 ISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALS 176 (674)
T ss_pred EEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEe
Confidence 33322111 12357899999998877666655 588999999999995431 2223444555555567789999999
Q ss_pred cCC-ChHHHHhhhCCCCccccCCcccceeEEEecCC-----CCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 162 ATL-DAEKFSAYFNFAPILRVPGRRYPVEIHYTKAP-----ESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 162 AT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
||+ |.+.+++|++. +.+....+..|+++...... ........+...+... ..+++++||||+++++++.++.
T Consensus 177 ATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 177 ATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKET-VNDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred CccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHH-HhCCCcEEEEeccHHHHHHHHH
Confidence 999 89999999964 45556667667664322110 0000000011111111 1347899999999999999999
Q ss_pred HHHHHHHhhcCC----------------CCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEE
Q 041899 236 ILKERIRKLGTK----------------IGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVV 299 (650)
Q Consensus 236 ~L~~~~~~~~~~----------------~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VI 299 (650)
.|.+.......- .-...+..+||+|+.++|..+++.|++|.++|||||+++++|+|+|+..+||
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII 334 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV 334 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE
Confidence 998764321100 0012477899999999999999999999999999999999999999988888
Q ss_pred eCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeC-ccccc---cccCCCCCccccccCh---
Q 041899 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYT-INSYQ---EDMEDNTVPEIQRTNL--- 369 (650)
Q Consensus 300 d~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~-~~~~~---~~~~~~~~pei~r~~l--- 369 (650)
+. .+.|+.. ...++|..+|.||+|||||.| .|.++.+.. +++++ +.+... |+...+.|
T Consensus 335 ~~----~~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~--~~pi~S~l~~~ 402 (674)
T PRK01172 335 RD----ITRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGE--PEPVISYMGSQ 402 (674)
T ss_pred cC----ceEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCC--CCceeecCCCc
Confidence 62 2334431 334799999999999999998 577766643 22221 112222 22222211
Q ss_pred ---hHHHHHHHhcCC----CCCCCC---CCC--CCCh---HHHHHHHHHHHHHcCCCCCCC--CccHHHHHhccCCCChH
Q 041899 370 ---ANVILILKNLGI----DDLLNF---DFL--DSPP---QELLRKALELLYALGALNQVG--ELTKVGRQMAEFPLDPM 432 (650)
Q Consensus 370 ---~~~~L~l~~~~~----~~~~~~---~~~--~~p~---~~~i~~a~~~L~~~g~l~~~~--~lT~lG~~~~~~p~~p~ 432 (650)
...+|...+.|. +++.+| .|+ .+++ .+.++.+++.|.+.|+|+.++ .+|++|+++|++|++|.
T Consensus 403 ~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~ 482 (674)
T PRK01172 403 RKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPE 482 (674)
T ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHH
Confidence 112334444443 333333 333 3322 567899999999999998654 57999999999999999
Q ss_pred HHHHHHhhcccc-ChHHHHHHHHhh
Q 041899 433 LSKMIVASDKFK-CSNEIITIAALL 456 (650)
Q Consensus 433 ~~~~l~~~~~~~-c~~~~l~i~a~l 456 (650)
.++.+..+.... ....++.+.+..
T Consensus 483 t~~~~~~~l~~~~~~~~~l~~~~~~ 507 (674)
T PRK01172 483 SALILKSAFDHDYDEDLALYYISLC 507 (674)
T ss_pred HHHHHHHHhhccCCHHHHHHHhhcC
Confidence 999998877643 334455555433
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.2e-44 Score=408.66 Aligned_cols=445 Identities=21% Similarity=0.250 Sum_probs=306.0
Q ss_pred cCCCchHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHh---CCcc
Q 041899 7 KTLPIYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREM---GVKL 82 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~---~~~~ 82 (650)
+---++++|.++++. +.+++++++++|||||||..+..+++... .++++++|++|+++|+.|.++++.+ + |..+
T Consensus 20 g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l-~~~~kal~i~P~raLa~q~~~~~~~-~~~~g~~v 97 (737)
T PRK02362 20 GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAI-ARGGKALYIVPLRALASEKFEEFER-FEELGVRV 97 (737)
T ss_pred CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHH-hcCCcEEEEeChHHHHHHHHHHHHH-hhcCCCEE
Confidence 334589999999998 78999999999999999988877777653 3567999999999999999999975 4 3333
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcC-CCCCCCceEEecccccCC--ccccHHHHHHHHHHhcCCCceEEE
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSD-PKLESYSVLMVDEAHERT--LSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~--~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
+...|.... ........+|+++||+.+...+... .++.++++|||||+|.-+ .....+..++.++....++.|+|+
T Consensus 98 ~~~tGd~~~-~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~ 176 (737)
T PRK02362 98 GISTGDYDS-RDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVA 176 (737)
T ss_pred EEEeCCcCc-cccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEE
Confidence 333331111 1111235789999999886666543 378999999999999322 122333444555555677899999
Q ss_pred EccCC-ChHHHHhhhCCCCccccCCcccceeEE--Eec-----CCCC----chHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 160 SSATL-DAEKFSAYFNFAPILRVPGRRYPVEIH--YTK-----APES----NYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 160 ~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
||||+ |++.+++|++.. .+....++.++... +.. .... .........+.... ..++++||||+++
T Consensus 177 lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr 253 (737)
T PRK02362 177 LSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSR 253 (737)
T ss_pred EcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCH
Confidence 99999 889999999743 23333333333321 110 0000 00022222333332 2478999999999
Q ss_pred HHHHHHHHHHHHHHHh----------------hcCCCC-----------ceEEEeecCCCCHHHHhhhcCCCCCCCcEEE
Q 041899 228 EEIETVEEILKERIRK----------------LGTKIG-----------ELIVCPVYANLPTELQAKIFVPTPDGARKVV 280 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~----------------~~~~~~-----------~~~v~~lh~~l~~~~r~~i~~~~~~g~~kil 280 (650)
.+++.++..|...... +....+ ...+..+||+|+.++|..+++.|++|.++||
T Consensus 254 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VL 333 (737)
T PRK02362 254 RNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVI 333 (737)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999998765321 000000 1357889999999999999999999999999
Q ss_pred EeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccc-c---c
Q 041899 281 LATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINS-Y---Q 353 (650)
Q Consensus 281 vaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-~---~ 353 (650)
|||+++++|||+|++++||+. ...||+..|. .|.+..+|.||+|||||.| .|.++.+....+ . .
T Consensus 334 vaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ 404 (737)
T PRK02362 334 SSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELF 404 (737)
T ss_pred EechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHH
Confidence 999999999999999999974 5568876543 4899999999999999998 499999986532 1 1
Q ss_pred cccCCCCCccccc------cChhHHHHHHHhcCC----CCCCCC---CCCCCC------hHHHHHHHHHHHHHcCCCCCC
Q 041899 354 EDMEDNTVPEIQR------TNLANVILILKNLGI----DDLLNF---DFLDSP------PQELLRKALELLYALGALNQV 414 (650)
Q Consensus 354 ~~~~~~~~pei~r------~~l~~~~L~l~~~~~----~~~~~~---~~~~~p------~~~~i~~a~~~L~~~g~l~~~ 414 (650)
..+.. ..|+-.. ..|.+.++...+.|. ++..+| .|+..+ -.+.++.+++.|.+.|+|+.+
T Consensus 405 ~~~l~-~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~ 483 (737)
T PRK02362 405 ERYIW-ADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEED 483 (737)
T ss_pred HHHHh-CCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeec
Confidence 11111 1222222 235566666666653 122111 333222 345689999999999999877
Q ss_pred CC---ccHHHHHhccCCCChHHHHHHHhhcccc---ChHHHHHHHHhhhcCCCccccCc
Q 041899 415 GE---LTKVGRQMAEFPLDPMLSKMIVASDKFK---CSNEIITIAALLSVGNSVFYRPK 467 (650)
Q Consensus 415 ~~---lT~lG~~~~~~p~~p~~~~~l~~~~~~~---c~~~~l~i~a~ls~~~~~f~~~~ 467 (650)
++ +|++|+++|.++++|..+..+..+.... ....++.+.+...+.+.+..++.
T Consensus 484 ~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~ 542 (737)
T PRK02362 484 GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSG 542 (737)
T ss_pred CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChh
Confidence 64 8999999999999999999998876542 23445656654444344444443
No 16
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.8e-41 Score=383.60 Aligned_cols=442 Identities=17% Similarity=0.137 Sum_probs=292.5
Q ss_pred hcCCCchHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 6 RKTLPIYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
+.---++++|.++++. +.+++++++++|||||||..+...++......+++++|++|+++|+.|+++++.. +. ..|.
T Consensus 19 ~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~-~~-~~g~ 96 (720)
T PRK00254 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD-WE-KLGL 96 (720)
T ss_pred CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH-Hh-hcCC
Confidence 4444689999999986 7899999999999999998877777665444567999999999999999998865 32 2333
Q ss_pred Eeeeeeccc---ccCCCCceEEEEChHHHHHHHhcC-CCCCCCceEEecccccCCc--cccHHHHHHHHHHhcCCCceEE
Q 041899 85 EVGYSIRFE---DCTSEKTVLKYMTDGMVLREMLSD-PKLESYSVLMVDEAHERTL--STDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 85 ~vg~~~~~~---~~~~~~~~i~~~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~~~~~~~kii 158 (650)
.++...... .......+|+++||+.+...+... .+++++++||+||+|.-+. ....+..++. ....+.|+|
T Consensus 97 ~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~---~l~~~~qiI 173 (720)
T PRK00254 97 RVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILT---HMLGRAQIL 173 (720)
T ss_pred EEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHH---hcCcCCcEE
Confidence 333221111 111235789999999987666543 4789999999999994221 1112222222 234678999
Q ss_pred EEccCC-ChHHHHhhhCCCCccccCCcccceeE--EEe-----cCCC-CchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 041899 159 ISSATL-DAEKFSAYFNFAPILRVPGRRYPVEI--HYT-----KAPE-SNYIDAAIVTTLEIHATQASGDILVFLTGQEE 229 (650)
Q Consensus 159 ~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 229 (650)
+||||+ |++.+++|++.. .+....++.+... ++. .... ..+.......+.+... .++++||||+++..
T Consensus 174 ~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~ 250 (720)
T PRK00254 174 GLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRS 250 (720)
T ss_pred EEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHH
Confidence 999999 899999999743 3333444444321 111 1111 1111222222223222 36899999999999
Q ss_pred HHHHHHHHHHHHHhhc----------------CCC--------CceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 041899 230 IETVEEILKERIRKLG----------------TKI--------GELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNI 285 (650)
Q Consensus 230 i~~~~~~L~~~~~~~~----------------~~~--------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i 285 (650)
++.++..|.+.+.... ... -...+..+||+|++++|..+++.|++|.++|||||++
T Consensus 251 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~t 330 (720)
T PRK00254 251 AEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPT 330 (720)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcH
Confidence 9999888865432100 000 0135889999999999999999999999999999999
Q ss_pred ccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcccc---ccccCCC
Q 041899 286 AETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSY---QEDMEDN 359 (650)
Q Consensus 286 ~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~---~~~~~~~ 359 (650)
+++|||+|++++||... ..|+ ..+. .+.+..+|.||+|||||.| .|.++.+.+.+.. .+.+..
T Consensus 331 La~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~- 399 (720)
T PRK00254 331 LSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF- 399 (720)
T ss_pred HhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-
Confidence 99999999999999642 3444 1221 2466789999999999986 5899988764331 111111
Q ss_pred CCcccc------ccChhHHHHHHHhcC-CCCCCC--------CCCCCCCh----HHHHHHHHHHHHHcCCCCCC--C--C
Q 041899 360 TVPEIQ------RTNLANVILILKNLG-IDDLLN--------FDFLDSPP----QELLRKALELLYALGALNQV--G--E 416 (650)
Q Consensus 360 ~~pei~------r~~l~~~~L~l~~~~-~~~~~~--------~~~~~~p~----~~~i~~a~~~L~~~g~l~~~--~--~ 416 (650)
..||-. ...|...++.....+ +.+..+ |-+...|+ .+.++.++..|.+.|+|+.+ + .
T Consensus 400 ~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~ 479 (720)
T PRK00254 400 GKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFI 479 (720)
T ss_pred CCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEe
Confidence 112111 122344455555444 222111 11122233 35678899999999999654 2 4
Q ss_pred ccHHHHHhccCCCChHHHHHHHhhcc----ccChHHHHHHHHhhhcCCCccccC
Q 041899 417 LTKVGRQMAEFPLDPMLSKMIVASDK----FKCSNEIITIAALLSVGNSVFYRP 466 (650)
Q Consensus 417 lT~lG~~~~~~p~~p~~~~~l~~~~~----~~c~~~~l~i~a~ls~~~~~f~~~ 466 (650)
+|++|+++|.++++|..++.+..+.. ......++.+.+...+..++..+.
T Consensus 480 ~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~ 533 (720)
T PRK00254 480 PLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSR 533 (720)
T ss_pred eChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcch
Confidence 79999999999999999999987764 234566777776665544444443
No 17
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.6e-40 Score=336.63 Aligned_cols=433 Identities=21% Similarity=0.188 Sum_probs=311.5
Q ss_pred hHhhhcCCCchHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHh--
Q 041899 2 LQKERKTLPIYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREM-- 78 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~-- 78 (650)
+++.+..-.+.|.|.-.+++ +.++++.+|+.+|+||||.+..++=....+..+++.++++|..+||+|.++.+.+.+
T Consensus 208 ~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~ 287 (830)
T COG1202 208 MLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSK 287 (830)
T ss_pred HHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhc
Confidence 34555566677888888887 889999999999999999887777555556667899999999999999999998766
Q ss_pred -CCccCcEeeee-eccc-----ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccc-----cCCccccHHHHHHH
Q 041899 79 -GVKLGHEVGYS-IRFE-----DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAH-----ERTLSTDILLGIFK 146 (650)
Q Consensus 79 -~~~~g~~vg~~-~~~~-----~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~H-----er~~~~d~ll~~l~ 146 (650)
|..+...||.. ++.. ...+.+++|++.|++=+--.+.....+.+++.|||||+| ||+...|-+.+.++
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 33333445521 1111 234578899999997554444466789999999999999 68877766655555
Q ss_pred HHHhcCCCceEEEEccCC-ChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHH----HH-hcCCCCCE
Q 041899 147 DLVRLRSDLKLLISSATL-DAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLE----IH-ATQASGDI 220 (650)
Q Consensus 147 ~~~~~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~i 220 (650)
. ..++.|+|.+|||+ |++.++..++ ...+..+.|+.|++-|..-.....-....+..+.+ .. ...-.|++
T Consensus 368 ~---l~~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQt 443 (830)
T COG1202 368 Y---LFPGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQT 443 (830)
T ss_pred H---hCCCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCce
Confidence 4 67899999999999 9999999996 56677888888888776554432222222222222 11 12225899
Q ss_pred EEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEe
Q 041899 221 LVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVD 300 (650)
Q Consensus 221 LVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId 300 (650)
|||.+++..++.++..|... ++...|+|+||+..+|+.++..|.++++.++|+|.+++.|||+|.-.+|+.
T Consensus 444 IVFT~SRrr~h~lA~~L~~k---------G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFE 514 (830)
T COG1202 444 IVFTYSRRRCHELADALTGK---------GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFE 514 (830)
T ss_pred EEEecchhhHHHHHHHhhcC---------CcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHH
Confidence 99999999999999999865 788999999999999999999999999999999999999999998777765
Q ss_pred CCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcc-ccccccCCCC----------Cccccc
Q 041899 301 SGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTIN-SYQEDMEDNT----------VPEIQR 366 (650)
Q Consensus 301 ~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~-~~~~~~~~~~----------~pei~r 366 (650)
+= .+-..|.|+.+|.||.|||||++ .|++|.+..+. .|...|.+.. .||-..
T Consensus 515 sL--------------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~ 580 (830)
T COG1202 515 SL--------------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVI 580 (830)
T ss_pred HH--------------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcce
Confidence 31 12345999999999999999999 79999997543 3332232221 122111
Q ss_pred c------ChhHHHHHHHhcC----CCCCCCCCCCCCChHHHHHHHHHHHHHcCCCCCCC---CccHHHHHhccCCCChHH
Q 041899 367 T------NLANVILILKNLG----IDDLLNFDFLDSPPQELLRKALELLYALGALNQVG---ELTKVGRQMAEFPLDPML 433 (650)
Q Consensus 367 ~------~l~~~~L~l~~~~----~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~~~~---~lT~lG~~~~~~p~~p~~ 433 (650)
. .+++++...-..+ +.++.+..+-. .-..+.++..|++.|+|+.+| ++|+.|++++..-+.|..
T Consensus 581 vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g~---~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~ 657 (830)
T COG1202 581 VEYDEEDEEENVLASAGVTNSLSVIERVNSLMLGA---AFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSE 657 (830)
T ss_pred eccCcHHHHHHHHHHhhhcCcHHHHhhcChhhccc---cCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchH
Confidence 1 1223322111111 11111111100 112478999999999999887 489999999999999999
Q ss_pred HHHHHhhccccChHHHHHHHHhhhcCCCccccC
Q 041899 434 SKMIVASDKFKCSNEIITIAALLSVGNSVFYRP 466 (650)
Q Consensus 434 ~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~ 466 (650)
|..+..+.. . ....+.|++.|.-+...++++
T Consensus 658 a~~Ir~~v~-~-~~~pl~i~~~l~pfE~ayls~ 688 (830)
T COG1202 658 AEFIREGVL-A-SMDPLRIAAELEPFENAYLSG 688 (830)
T ss_pred HHHHHHhhh-c-cCChHhHhhccccccccccCh
Confidence 999998862 2 234467777776654444443
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.2e-39 Score=350.44 Aligned_cols=311 Identities=20% Similarity=0.220 Sum_probs=231.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|+++++.+.++++++++||||||||+.+.+.+++.... ...++++++|+|+||.|+++.+........+..+.
T Consensus 26 ~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~ 105 (460)
T PRK11776 26 EMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVL 105 (460)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 4789999999999999999999999999997665555554221 13379999999999999998886533211122222
Q ss_pred eeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 88 YSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 88 ~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
....+. .......+|+++||+.+.+.+.... .++++++||+||+| +..+..+...+...+....++.+++++
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~ 184 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLF 184 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEE
Confidence 111111 1122567899999999998887644 68999999999999 445555544444444445667899999
Q ss_pred ccCCC--hHHHHhhhCCCCc-cccCC--cccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 161 SATLD--AEKFSAYFNFAPI-LRVPG--RRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 161 SAT~~--~~~~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
|||++ ...+...+...|. +.+.. ....++.+|...+..+. ...+..+.....++++||||+++++++.+++
T Consensus 185 SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k----~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~ 260 (460)
T PRK11776 185 SATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDER----LPALQRLLLHHQPESCVVFCNTKKECQEVAD 260 (460)
T ss_pred EecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHH----HHHHHHHHHhcCCCceEEEECCHHHHHHHHH
Confidence 99994 3455555443332 32222 22235555555444332 2233333444456789999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.|.+. ++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||+
T Consensus 261 ~L~~~---------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------------- 316 (460)
T PRK11776 261 ALNAQ---------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------------- 316 (460)
T ss_pred HHHhC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE---------------
Confidence 99875 678999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.+..+|+||+||+||.| .|.||.++++++.
T Consensus 317 ---~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 317 ---YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred ---ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 444889999999999999998 6999999987653
No 19
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-39 Score=320.03 Aligned_cols=307 Identities=20% Similarity=0.240 Sum_probs=240.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
..+.|.+.++.+.+++++|..|.||||||-.+.+.++...+.+ ...++|+.|+|+||.|+++.+ +.+|...|..+..
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~ 162 (476)
T KOG0330|consen 84 PTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAV 162 (476)
T ss_pred CchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEEE
Confidence 5688999999999999999999999999933333333333332 238999999999999999877 5577666665554
Q ss_pred eeccccc------CCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 89 SIRFEDC------TSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 89 ~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
.+.+.+. .....+|+++|||.|+..+.+.. .++.++++|+|||+ |-++.||...+-+.+...+++.+.+++
T Consensus 163 lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~erqt~Lf 241 (476)
T KOG0330|consen 163 LVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPRERQTFLF 241 (476)
T ss_pred EecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCccceEEEE
Confidence 4444332 34678899999999999998544 68899999999999 999999987776666667788999999
Q ss_pred ccCC--ChHHHHhhhCCCCc-cccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 041899 161 SATL--DAEKFSAYFNFAPI-LRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVE 234 (650)
Q Consensus 161 SAT~--~~~~~~~~~~~~~~-~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~ 234 (650)
|||+ ...++..---..|+ +.++... -.++.+|+..+..+... .++.+.....++++||||++...+..++
T Consensus 242 sATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~----yLV~ll~e~~g~s~iVF~~t~~tt~~la 317 (476)
T KOG0330|consen 242 SATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT----YLVYLLNELAGNSVIVFCNTCNTTRFLA 317 (476)
T ss_pred EeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch----hHHHHHHhhcCCcEEEEEeccchHHHHH
Confidence 9999 45566543223332 2222221 12445555544332222 2233333455789999999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCC
Q 041899 235 EILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTG 314 (650)
Q Consensus 235 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~ 314 (650)
-.|+.. ++...++||.|+...|.-.++.|++|.+.|++||+++.+|+|||.|++|||
T Consensus 318 ~~L~~l---------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN-------------- 374 (476)
T KOG0330|consen 318 LLLRNL---------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN-------------- 374 (476)
T ss_pred HHHHhc---------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------------
Confidence 999876 899999999999999999999999999999999999999999999999999
Q ss_pred cccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 315 MESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 315 ~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
++.|.+..+|+||+||+||.| +|+.+.|.+..
T Consensus 375 ----yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqy 407 (476)
T KOG0330|consen 375 ----YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQY 407 (476)
T ss_pred ----cCCCCcHHHHHHHcccccccCCCcceEEEEehh
Confidence 677999999999999999999 79999999873
No 20
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5e-38 Score=352.88 Aligned_cols=415 Identities=22% Similarity=0.281 Sum_probs=283.3
Q ss_pred CchHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHH--HHhCCccCcEe
Q 041899 10 PIYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVS--REMGVKLGHEV 86 (650)
Q Consensus 10 pl~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~--~~~~~~~g~~v 86 (650)
-+++.|++.+.. +.+++|++|++|||||||.++.++++......+++++|++|+|+||.+.++.+. +.+|.+++..+
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~T 110 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIST 110 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEec
Confidence 367778888777 456799999999999999888888887755556799999999999999999998 56677666655
Q ss_pred eeeecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccc----c-CCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAH----E-RTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~H----e-r~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
|-. ......-..++|+++|++.+-..+.+.+ ++..+++|||||+| + |+...+. ++.+.....+.+|++++
T Consensus 111 gD~-~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~---iv~r~~~~~~~~rivgL 186 (766)
T COG1204 111 GDY-DLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLES---IVARMRRLNELIRIVGL 186 (766)
T ss_pred CCc-ccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehh---HHHHHHhhCcceEEEEE
Confidence 511 1111223678999999998766555555 78899999999999 3 6655554 44454456677999999
Q ss_pred ccCC-ChHHHHhhhCCCCccccCCcc--------cceeEEEecCCCC----chHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 161 SATL-DAEKFSAYFNFAPILRVPGRR--------YPVEIHYTKAPES----NYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 161 SAT~-~~~~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
|||+ |.+.+++|++..++ ....+. +...+.+...... ...+.....+...+ .+++++||||+++
T Consensus 187 SATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR 263 (766)
T COG1204 187 SATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSR 263 (766)
T ss_pred eeecCCHHHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecC
Confidence 9999 99999999986554 222221 1122222221111 11222223333332 3488999999999
Q ss_pred HHHHHHHHHHHHHHHhh---------cCCC-------------------CceEEEeecCCCCHHHHhhhcCCCCCCCcEE
Q 041899 228 EEIETVEEILKERIRKL---------GTKI-------------------GELIVCPVYANLPTELQAKIFVPTPDGARKV 279 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~~---------~~~~-------------------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~ki 279 (650)
..+...++.|....... .... -...+..+|+||+.++|..+++.|+.|+++|
T Consensus 264 ~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikV 343 (766)
T COG1204 264 KEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKV 343 (766)
T ss_pred chHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceE
Confidence 99999999998533211 0000 0124667899999999999999999999999
Q ss_pred EEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEee-Ccc--ccc
Q 041899 280 VLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLY-TIN--SYQ 353 (650)
Q Consensus 280 lvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~-~~~--~~~ 353 (650)
|+||++++.|+|.|.-++||.. ..+||+..|+ .+++..++.||+|||||+| -|..+.+- +.+ .+.
T Consensus 344 lv~TpTLA~GVNLPA~~VIIk~----~~~y~~~~g~-----~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~ 414 (766)
T COG1204 344 LVSTPTLAAGVNLPARTVIIKD----TRRYDPKGGI-----VDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYL 414 (766)
T ss_pred EEechHHhhhcCCcceEEEEee----eEEEcCCCCe-----EECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHH
Confidence 9999999999999977777742 6678875553 3799999999999999999 35444443 222 222
Q ss_pred cccCCCCCccccccCh------hHHHHHHHhcCCCCCCC------C---CCCC------CChHHHHHHHHHHHHHcC-CC
Q 041899 354 EDMEDNTVPEIQRTNL------ANVILILKNLGIDDLLN------F---DFLD------SPPQELLRKALELLYALG-AL 411 (650)
Q Consensus 354 ~~~~~~~~pei~r~~l------~~~~L~l~~~~~~~~~~------~---~~~~------~p~~~~i~~a~~~L~~~g-~l 411 (650)
........||...+.| ...++.+.+.+ +... | -+.. --....+.++++.|.+.+ .+
T Consensus 415 ~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~ 492 (766)
T COG1204 415 AELYIQSEPEPIESKLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLIL 492 (766)
T ss_pred HHHhhccCcchHHHhhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhcccee
Confidence 2233344454421111 11111111111 0000 0 0011 124566788999999986 55
Q ss_pred CCCC---CccHHHHHhccCCCChHHHHHHHhhcc
Q 041899 412 NQVG---ELTKVGRQMAEFPLDPMLSKMIVASDK 442 (650)
Q Consensus 412 ~~~~---~lT~lG~~~~~~p~~p~~~~~l~~~~~ 442 (650)
+... ..|++|+.+++++++|..++.+.....
T Consensus 493 ~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 493 DADWEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred eccccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 5433 579999999999999999999987654
No 21
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.6e-38 Score=349.72 Aligned_cols=312 Identities=19% Similarity=0.245 Sum_probs=226.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHH--HHHHHHHhcc-----cCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTT--QIPQYLHEAG-----YTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~-----~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
..+++|.++++.+.+++++|++||||||||. ++|.+..-.. ...+..++|++|+|+||.|+.+.+.+ ++...
T Consensus 152 ~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~-~~~~~ 230 (545)
T PTZ00110 152 EPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNK-FGASS 230 (545)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHH-Hhccc
Confidence 4789999999999999999999999999994 5565433211 11234799999999999999987755 44333
Q ss_pred CcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCc
Q 041899 83 GHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 83 g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 155 (650)
+..+........ ......+|+++||+.|++.+.... .+.++++||||||| +..+..+...+.+.+...+++.
T Consensus 231 ~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~ 309 (545)
T PTZ00110 231 KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDR 309 (545)
T ss_pred CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCC
Confidence 322221111111 112356899999999999887654 68999999999999 6666666655555555577889
Q ss_pred eEEEEccCCCh--HHHHhhh-CCCCcc-ccCC----cccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 156 KLLISSATLDA--EKFSAYF-NFAPIL-RVPG----RRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 156 kii~~SAT~~~--~~~~~~~-~~~~~~-~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
+++++|||++. +.+...+ ...++. .+.. ....++..+......+... .+..++..... ..+++||||+++
T Consensus 310 q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~-~L~~ll~~~~~-~~~k~LIF~~t~ 387 (545)
T PTZ00110 310 QTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRG-KLKMLLQRIMR-DGDKILIFVETK 387 (545)
T ss_pred eEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHH-HHHHHHHHhcc-cCCeEEEEecCh
Confidence 99999999943 4555443 333321 1111 0112222222222222222 22222222221 468999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccce
Q 041899 228 EEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMK 307 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~ 307 (650)
+.++.++..|... ++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 388 ~~a~~l~~~L~~~---------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~------- 451 (545)
T PTZ00110 388 KGADFLTKELRLD---------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN------- 451 (545)
T ss_pred HHHHHHHHHHHHc---------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE-------
Confidence 9999999998754 677889999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 308 WYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 308 ~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.+..+|+||+||+||.| .|.||.++++++.
T Consensus 452 -----------~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 452 -----------FDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred -----------eCCCCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 445899999999999999998 7999999987654
No 22
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-38 Score=340.54 Aligned_cols=308 Identities=17% Similarity=0.189 Sum_probs=219.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---------CCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---------TKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
..+++|.++++.+.++++++++||||||||..+...+++... ..+.+++|++|+|+||.|+++.+.. +..
T Consensus 30 ~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~-l~~ 108 (423)
T PRK04837 30 NCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP-LAQ 108 (423)
T ss_pred CCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH-Hhc
Confidence 467999999999999999999999999999554444332211 1234899999999999999877644 333
Q ss_pred ccCcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHh-cC
Q 041899 81 KLGHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LR 152 (650)
Q Consensus 81 ~~g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~ 152 (650)
..|..++....... ......+|+++||+.|++.+.... .+.++++||||||| +..+..+...+ +.+.. ..
T Consensus 109 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~~f~~~i-~~i~~~~~ 186 (423)
T PRK04837 109 ATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDLGFIKDI-RWLFRRMP 186 (423)
T ss_pred cCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhcccHHHH-HHHHHhCC
Confidence 34444443322221 122456899999999998886543 68899999999999 44444443333 22322 22
Q ss_pred --CCceEEEEccCCChH--HH-HhhhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEe
Q 041899 153 --SDLKLLISSATLDAE--KF-SAYFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFL 224 (650)
Q Consensus 153 --~~~kii~~SAT~~~~--~~-~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~ 224 (650)
...+.+++|||++.. .+ ..++.+...+.+.... ..+...+...... .....+..+......+++||||
T Consensus 187 ~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~----~k~~~l~~ll~~~~~~~~lVF~ 262 (423)
T PRK04837 187 PANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNE----EKMRLLQTLIEEEWPDRAIIFA 262 (423)
T ss_pred CccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHH----HHHHHHHHHHHhcCCCeEEEEE
Confidence 234578999999543 23 2344433233222111 1222222221111 1222333333334568899999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcc
Q 041899 225 TGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYS 304 (650)
Q Consensus 225 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~ 304 (650)
+++..++.+++.|... ++.+..+||+++.++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 263 ~t~~~~~~l~~~L~~~---------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~---- 329 (423)
T PRK04837 263 NTKHRCEEIWGHLAAD---------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN---- 329 (423)
T ss_pred CCHHHHHHHHHHHHhC---------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----
Confidence 9999999999999764 678999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 305 KMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 305 k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|.+..+|.||+||+||.| .|.++.++++++
T Consensus 330 --------------~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 330 --------------YDLPDDCEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred --------------eCCCCchhheEeccccccCCCCCeeEEEEeCHHH
Confidence 445889999999999999999 799999998764
No 23
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-38 Score=329.83 Aligned_cols=316 Identities=20% Similarity=0.253 Sum_probs=239.6
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcc------cCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAG------YTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~------~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
---..+.|.+.++.+..+++++..|.|||||| +++|.++.-.. ...+..++|++|||+||.|+.+.+ .+++
T Consensus 111 ~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~-~~~~ 189 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEA-REFG 189 (519)
T ss_pred CCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHH-HHHc
Confidence 33467889999999999999999999999999 88888766442 122448999999999999999666 5566
Q ss_pred CccCc--Eeeee-eccc---ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhc-
Q 041899 80 VKLGH--EVGYS-IRFE---DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRL- 151 (650)
Q Consensus 80 ~~~g~--~vg~~-~~~~---~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~- 151 (650)
..++. .+-|. .+.. ........|+++|||.|+..+.... .|++++++|+|||+ |+++.+|--.+-+.+...
T Consensus 190 ~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~ 268 (519)
T KOG0331|consen 190 KSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIP 268 (519)
T ss_pred CCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-hhhccccHHHHHHHHHhcC
Confidence 65542 21111 1111 1123457899999999999887665 79999999999999 999999877777776666
Q ss_pred CCCceEEEEccCCC--hHHHHhhhCCCCcc-ccCCc-----ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEE
Q 041899 152 RSDLKLLISSATLD--AEKFSAYFNFAPIL-RVPGR-----RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVF 223 (650)
Q Consensus 152 ~~~~kii~~SAT~~--~~~~~~~~~~~~~~-~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF 223 (650)
+++.+.++.|||.+ ...+++-|.+.|+- .+-+. ...+.......+ ..-....+..++.......++++|||
T Consensus 269 ~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIF 347 (519)
T KOG0331|consen 269 RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIF 347 (519)
T ss_pred CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 55668999999994 55666644334322 11111 011111111111 11122333444444445668899999
Q ss_pred eCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCc
Q 041899 224 LTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGY 303 (650)
Q Consensus 224 ~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~ 303 (650)
|.++..+.+++..|... ++.+.++||+.++.+|..+++.|++|+..||||||+|++|+|||+|++||+
T Consensus 348 c~tkr~~~~l~~~l~~~---------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--- 415 (519)
T KOG0331|consen 348 CETKRTCDELARNLRRK---------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--- 415 (519)
T ss_pred ecchhhHHHHHHHHHhc---------CcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe---
Confidence 99999999999999874 578999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccccc
Q 041899 304 SKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSYQ 353 (650)
Q Consensus 304 ~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 353 (650)
++.|-+..+|+||+||+||.+ .|..|.+|+...+.
T Consensus 416 ---------------ydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 416 ---------------YDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ---------------CCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 666999999999999999977 79999999987653
No 24
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=8.4e-38 Score=340.59 Aligned_cols=311 Identities=20% Similarity=0.210 Sum_probs=222.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--------CCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--------KHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--------~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
--.+++|.++++.+.+++++++++|||||||..+.+.+++.... ...+++|++|+++||.|+++.+.....
T Consensus 22 ~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~- 100 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK- 100 (456)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhc-
Confidence 35789999999999999999999999999995544444332111 112799999999999999988866432
Q ss_pred ccCcEeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCC
Q 041899 81 KLGHEVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 81 ~~g~~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 153 (650)
..+..+....... .......+|+|+||+.|+..+.... .++++++||||||| +.....+...+...+.....
T Consensus 101 ~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~ 179 (456)
T PRK10590 101 YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPA 179 (456)
T ss_pred cCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhccccHHHHHHHHHhCCc
Confidence 2222111111111 1123457899999999998776554 68999999999999 44554454443333334556
Q ss_pred CceEEEEccCCCh--HHHHhhh-CCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 154 DLKLLISSATLDA--EKFSAYF-NFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 154 ~~kii~~SAT~~~--~~~~~~~-~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
+.+++++|||++. ..+...+ .+...+.+..+. ..+..++...... .. ...+..+.......++||||+++
T Consensus 180 ~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~k---~~~l~~l~~~~~~~~~lVF~~t~ 255 (456)
T PRK10590 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKK-RK---RELLSQMIGKGNWQQVLVFTRTK 255 (456)
T ss_pred cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHH-HH---HHHHHHHHHcCCCCcEEEEcCcH
Confidence 7789999999954 4555444 333223222111 1223232222211 11 12223333334457899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccce
Q 041899 228 EEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMK 307 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~ 307 (650)
.+++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 256 ~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~------- 319 (456)
T PRK10590 256 HGANHLAEQLNKD---------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN------- 319 (456)
T ss_pred HHHHHHHHHHHHC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE-------
Confidence 9999999999764 677899999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 308 WYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 308 ~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.+..+|+||+||+||.| .|.++.+++.++.
T Consensus 320 -----------~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 320 -----------YELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred -----------eCCCCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 445899999999999999998 6999999886543
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.4e-37 Score=336.27 Aligned_cols=314 Identities=18% Similarity=0.244 Sum_probs=226.5
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc----c--CCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG----Y--TKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~----~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
.--..+++|.++++.+.++++++++||||+|||..+...++... . ....+++|++|+++|+.|+++.+.. +..
T Consensus 20 g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~-l~~ 98 (434)
T PRK11192 20 GYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE-LAK 98 (434)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH-HHc
Confidence 33457899999999999999999999999999955433333221 1 1234899999999999999987754 333
Q ss_pred ccCcEeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCC
Q 041899 81 KLGHEVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 81 ~~g~~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 153 (650)
..+..++...... .....+.+|+++||+.|++.+.... .++++++||||||| +.....+...+.......+.
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~~~~~~~~~~i~~~~~~ 177 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLDMGFAQDIETIAAETRW 177 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhCCCcHHHHHHHHHhCcc
Confidence 3333333222111 1123467899999999999887665 58899999999999 44444443333333333555
Q ss_pred CceEEEEccCCChH---HHHhhhCCCCc-cccCCc---ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 041899 154 DLKLLISSATLDAE---KFSAYFNFAPI-LRVPGR---RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTG 226 (650)
Q Consensus 154 ~~kii~~SAT~~~~---~~~~~~~~~~~-~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~ 226 (650)
..+++++|||++.. .+..++...++ +..... ...+...+...... ......+..+......+++||||++
T Consensus 178 ~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~---~~k~~~l~~l~~~~~~~~~lVF~~s 254 (434)
T PRK11192 178 RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDL---EHKTALLCHLLKQPEVTRSIVFVRT 254 (434)
T ss_pred ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCH---HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 67899999999643 55555544332 111111 11233333322221 1223333444444456899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 227 QEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 227 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
+++++.++..|... ++.+..+||+|+..+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 255 ~~~~~~l~~~L~~~---------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~------ 319 (434)
T PRK11192 255 RERVHELAGWLRKA---------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN------ 319 (434)
T ss_pred hHHHHHHHHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE------
Confidence 99999999999764 678999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.|...|+||+||+||.| .|.++.+++..++
T Consensus 320 ------------~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~ 354 (434)
T PRK11192 320 ------------FDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDH 354 (434)
T ss_pred ------------ECCCCCHHHHhhcccccccCCCCceEEEEecHHHH
Confidence 445889999999999999998 6999999876654
No 26
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.5e-37 Score=342.71 Aligned_cols=310 Identities=16% Similarity=0.184 Sum_probs=221.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcc-------cCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAG-------YTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-------~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
-.+++|.++++.+.++++++++|||||||| +++|.+..-.. ...+.+++|++|+|+||.|+.+.+.. ++.
T Consensus 143 ~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~-l~~ 221 (518)
T PLN00206 143 FPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV-LGK 221 (518)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH-HhC
Confidence 468999999999999999999999999999 45554422110 11345899999999999998876644 443
Q ss_pred ccCcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCC
Q 041899 81 KLGHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 81 ~~g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 153 (650)
..+..+.....++. ......+|+++|||.|...+.... .++++++||||||| +..+..+... +..+....+
T Consensus 222 ~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~-i~~i~~~l~ 299 (518)
T PLN00206 222 GLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQ-VMQIFQALS 299 (518)
T ss_pred CCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHH-HHHHHHhCC
Confidence 33322221111111 123457899999999988876544 68999999999999 4444333333 233333446
Q ss_pred CceEEEEccCCC--hHHHHhhhCCCCcc-ccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhc--CCCCCEEEEeC
Q 041899 154 DLKLLISSATLD--AEKFSAYFNFAPIL-RVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHAT--QASGDILVFLT 225 (650)
Q Consensus 154 ~~kii~~SAT~~--~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iLVF~~ 225 (650)
+.+++++|||++ .+.+...+...++. .+.... ..+...+......+... .+..+... ...+++|||++
T Consensus 300 ~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~----~l~~~l~~~~~~~~~~iVFv~ 375 (518)
T PLN00206 300 QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQ----KLFDILKSKQHFKPPAVVFVS 375 (518)
T ss_pred CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHH----HHHHHHHhhcccCCCEEEEcC
Confidence 789999999994 45677766544432 221111 11222222222222111 22222221 22468999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccc
Q 041899 226 GQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSK 305 (650)
Q Consensus 226 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k 305 (650)
++..++.+++.|... .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 376 s~~~a~~l~~~L~~~--------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----- 442 (518)
T PLN00206 376 SRLGADLLANAITVV--------TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----- 442 (518)
T ss_pred CchhHHHHHHHHhhc--------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE-----
Confidence 999999999888653 2677889999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 306 MKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 306 ~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.+..+|+||+|||||.| .|.++.+++.++.
T Consensus 443 -------------~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 443 -------------FDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred -------------eCCCCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 444899999999999999999 6999999987653
No 27
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.4e-37 Score=342.79 Aligned_cols=313 Identities=18% Similarity=0.212 Sum_probs=230.6
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
.-...+++|.++++.+.+++++|++||||||||..+.+.+++... ....+++|++|+|+||.|+++.+.+..+...+.
T Consensus 25 G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i 104 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV 104 (629)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCc
Confidence 344578999999999999999999999999999665555544321 124589999999999999998887654332233
Q ss_pred Eeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 85 EVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 85 ~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
.+........ ......+|+|+||+.+++.+.... .++++++|||||||+ .+...+...+...+.....+.++
T Consensus 105 ~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~di~~Il~~lp~~~q~ 183 (629)
T PRK11634 105 NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIEDVETIMAQIPEGHQT 183 (629)
T ss_pred eEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHHHHHHHHhCCCCCeE
Confidence 3322111111 123457899999999999887665 689999999999994 33444444444444445667899
Q ss_pred EEEccCCCh--HHHH-hhhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 158 LISSATLDA--EKFS-AYFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 158 i~~SAT~~~--~~~~-~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
+++|||++. ..+. .|+.+...+.+.... ..+...|......+.. ..+..+.......++||||+++.++.
T Consensus 184 llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~----~~L~~~L~~~~~~~~IVF~~tk~~a~ 259 (629)
T PRK11634 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN----EALVRFLEAEDFDAAIIFVRTKNATL 259 (629)
T ss_pred EEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHH----HHHHHHHHhcCCCCEEEEeccHHHHH
Confidence 999999943 3343 455444334333222 1233334333222222 22333334445678999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 232 TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
.+++.|.+. ++.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 260 ~l~~~L~~~---------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----------- 319 (629)
T PRK11634 260 EVAEALERN---------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----------- 319 (629)
T ss_pred HHHHHHHhC---------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE-----------
Confidence 999999764 678999999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|.+..+|+||+||+||.| .|.++.+++..+
T Consensus 320 -------~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 320 -------YDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred -------eCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 455899999999999999999 599999987654
No 28
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.8e-37 Score=334.69 Aligned_cols=311 Identities=16% Similarity=0.223 Sum_probs=223.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
-.+++|.++++.+.++++++++||||||||..+...++.... ..+.++++++|+++|+.|+.+.+.. ++...+..++
T Consensus 50 ~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~-~~~~~~~~~~ 128 (401)
T PTZ00424 50 KPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLA-LGDYLKVRCH 128 (401)
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHH-HhhhcCceEE
Confidence 368999999999999999999999999999766555544321 1345899999999999999877654 3333322222
Q ss_pred eeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 88 YSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 88 ~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
...... .......+|+++|++.+.+.+.... .++++++|||||+|. .....+...+...+....++.+++++
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~ 207 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSRGFKGQIYDVFKKLPPDVQVALF 207 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhcchHHHHHHHHhhCCCCcEEEEE
Confidence 111111 1122346899999999988877654 689999999999993 22222322333333345678999999
Q ss_pred ccCCChH--HHHh-hhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 041899 161 SATLDAE--KFSA-YFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVE 234 (650)
Q Consensus 161 SAT~~~~--~~~~-~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~ 234 (650)
|||++.+ .+.. ++.....+.+.... ..+..++......++.. ..+..+.......++||||+++++++.++
T Consensus 208 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~ivF~~t~~~~~~l~ 284 (401)
T PTZ00424 208 SATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKF---DTLCDLYETLTITQAIIYCNTRRKVDYLT 284 (401)
T ss_pred EecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHH---HHHHHHHHhcCCCeEEEEecCcHHHHHHH
Confidence 9999543 3333 33322222222211 12333444333222222 22333444445678999999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCC
Q 041899 235 EILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTG 314 (650)
Q Consensus 235 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~ 314 (650)
+.|.+. ++.+..+||+++.++|..+++.|++|+++|||||+++++|+|+|++++||+
T Consensus 285 ~~l~~~---------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~-------------- 341 (401)
T PTZ00424 285 KKMHER---------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN-------------- 341 (401)
T ss_pred HHHHHC---------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------------
Confidence 988764 677899999999999999999999999999999999999999999999998
Q ss_pred cccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 315 MESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 315 ~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
.+.|.|..+|.||+|||||.| .|.|+.++++++.
T Consensus 342 ----~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~ 376 (401)
T PTZ00424 342 ----YDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDI 376 (401)
T ss_pred ----ECCCCCHHHEeecccccccCCCCceEEEEEcHHHH
Confidence 444889999999999999998 7999999987764
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.4e-37 Score=336.51 Aligned_cols=309 Identities=19% Similarity=0.244 Sum_probs=219.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC---------CCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT---------KHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~---------~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
--++++|.++++.+.+++++|+++|||||||..+...+++.... ...+++|++|+++|+.|+++.+... .
T Consensus 108 ~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l-~ 186 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAAL-T 186 (475)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHh-h
Confidence 44789999999999999999999999999995444443332111 1358999999999999999888553 3
Q ss_pred CccCcEeeeeeccc-------ccCCCCceEEEEChHHHHHHHhcC-CCCCCCceEEecccccCCccccHHHHHHHHHHhc
Q 041899 80 VKLGHEVGYSIRFE-------DCTSEKTVLKYMTDGMVLREMLSD-PKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL 151 (650)
Q Consensus 80 ~~~g~~vg~~~~~~-------~~~~~~~~i~~~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 151 (650)
...+..+.-..... .......+|+++||++|+..+... ..++++++|||||+|. -....+. ..++.+...
T Consensus 187 ~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~-l~~~~~~-~~l~~i~~~ 264 (475)
T PRK01297 187 KYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADR-MLDMGFI-PQVRQIIRQ 264 (475)
T ss_pred ccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHH-HHhcccH-HHHHHHHHh
Confidence 23333332111111 112345789999999998876553 3789999999999993 2333332 223333332
Q ss_pred ---CCCceEEEEccCCC--hHHHHhhhCCCC-ccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEE
Q 041899 152 ---RSDLKLLISSATLD--AEKFSAYFNFAP-ILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILV 222 (650)
Q Consensus 152 ---~~~~kii~~SAT~~--~~~~~~~~~~~~-~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLV 222 (650)
..+.+++++|||+. ...+.+.+...+ .+.+.... ..+..++......+. ...+..+......+++||
T Consensus 265 ~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~ll~~~~~~~~IV 340 (475)
T PRK01297 265 TPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDK----YKLLYNLVTQNPWERVMV 340 (475)
T ss_pred CCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhH----HHHHHHHHHhcCCCeEEE
Confidence 23578999999984 344444443333 22222111 112223322222222 122333333444578999
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCC
Q 041899 223 FLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSG 302 (650)
Q Consensus 223 F~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G 302 (650)
||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+++|||||+++++|||+|++++||+.|
T Consensus 341 F~~s~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~ 411 (475)
T PRK01297 341 FANRKDEVRRIEERLVKD---------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFT 411 (475)
T ss_pred EeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeC
Confidence 999999999999988654 57788999999999999999999999999999999999999999999999944
Q ss_pred cccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 303 YSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 303 ~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
.|.|..+|+||+|||||.| .|.++.++++++
T Consensus 412 ------------------~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 412 ------------------LPEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred ------------------CCCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 4899999999999999999 699999998764
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.3e-37 Score=343.30 Aligned_cols=309 Identities=19% Similarity=0.229 Sum_probs=222.6
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---------CCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---------TKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
-.+++|.++++.+.++++++++||||||||..+...+++... ....+++|++|+++|+.|+++.+.+ ++.
T Consensus 31 ~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~-l~~ 109 (572)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK-FGA 109 (572)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH-Hhc
Confidence 468999999999999999999999999999554444443211 1135899999999999999988754 555
Q ss_pred ccCcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhc-
Q 041899 81 KLGHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRL- 151 (650)
Q Consensus 81 ~~g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~- 151 (650)
..+..++....... ......+|+|+||+.|++.+.... .+..+++|||||+|. ..+..+...+...+...
T Consensus 110 ~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~-lld~gf~~~i~~il~~lp 188 (572)
T PRK04537 110 DLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADR-MFDLGFIKDIRFLLRRMP 188 (572)
T ss_pred cCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHH-HhhcchHHHHHHHHHhcc
Confidence 55554443322211 122356899999999999886643 578899999999993 33333333222222222
Q ss_pred -CCCceEEEEccCCChH--H-HHhhhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEe
Q 041899 152 -RSDLKLLISSATLDAE--K-FSAYFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFL 224 (650)
Q Consensus 152 -~~~~kii~~SAT~~~~--~-~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~ 224 (650)
+.+.+++++|||++.. . ...++.....+.+.... ..+...+...... .....+..+.....+.++||||
T Consensus 189 ~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~----~k~~~L~~ll~~~~~~k~LVF~ 264 (572)
T PRK04537 189 ERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADE----EKQTLLLGLLSRSEGARTMVFV 264 (572)
T ss_pred cccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHH----HHHHHHHHHHhcccCCcEEEEe
Confidence 2267999999999543 2 33344433222222211 1122333222211 2223344444445578999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcc
Q 041899 225 TGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYS 304 (650)
Q Consensus 225 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~ 304 (650)
+++..++.+++.|.+. ++.+..+||+|+..+|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 265 nt~~~ae~l~~~L~~~---------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn---- 331 (572)
T PRK04537 265 NTKAFVERVARTLERH---------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN---- 331 (572)
T ss_pred CCHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----
Confidence 9999999999999764 678999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 305 KMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 305 k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|.+..+|+||+||+||.| .|.|+.++++.+
T Consensus 332 --------------yd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 332 --------------YDLPFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred --------------cCCCCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 445899999999999999998 699999987653
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.7e-36 Score=344.47 Aligned_cols=321 Identities=19% Similarity=0.171 Sum_probs=222.1
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
++--.++++|.++++.+.+++++++++|||||||..+.+.+++... .++.+++|+.|+|+|+.|+.+++.+. + ..+.
T Consensus 32 ~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l-~-~~~i 109 (742)
T TIGR03817 32 AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVREL-T-LRGV 109 (742)
T ss_pred cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHh-c-cCCe
Confidence 3444689999999999999999999999999999444433443322 23458999999999999999998654 3 1222
Q ss_pred Eeee----eeccc-ccCCCCceEEEEChHHHHHHHhcC-----CCCCCCceEEecccccC-CccccHHHHHHHHH---Hh
Q 041899 85 EVGY----SIRFE-DCTSEKTVLKYMTDGMVLREMLSD-----PKLESYSVLMVDEAHER-TLSTDILLGIFKDL---VR 150 (650)
Q Consensus 85 ~vg~----~~~~~-~~~~~~~~i~~~T~~~Ll~~l~~~-----~~l~~~~~iIiDE~Her-~~~~d~ll~~l~~~---~~ 150 (650)
.++. ..... .....+.+|+++||++|...++.. ..++++++|||||+|.. +.....+..+++++ ..
T Consensus 110 ~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~ 189 (742)
T TIGR03817 110 RPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCA 189 (742)
T ss_pred EEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHH
Confidence 2221 11000 112345789999999987654432 13789999999999942 22122222233333 22
Q ss_pred -cCCCceEEEEccCC-ChHHHHhhhCCCCccccCCc--cc-ceeEEEecCCC------------CchHHHHHHHHHHHHh
Q 041899 151 -LRSDLKLLISSATL-DAEKFSAYFNFAPILRVPGR--RY-PVEIHYTKAPE------------SNYIDAAIVTTLEIHA 213 (650)
Q Consensus 151 -~~~~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~~------------~~~~~~~~~~~~~~~~ 213 (650)
...+.|+|++|||+ ++..+.+++.+.++..+... .. ...+.+...+. ..........+..+..
T Consensus 190 ~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~ 269 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA 269 (742)
T ss_pred hcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHH
Confidence 23568999999999 66666666555554444322 11 12222221110 0111122222323322
Q ss_pred cCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC
Q 041899 214 TQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID 293 (650)
Q Consensus 214 ~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip 293 (650)
.+.++||||+|++.++.++..|.+.+...... .+..+..+||++++++|.++++.|++|+.++||||+++++|||||
T Consensus 270 --~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~-l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~ 346 (742)
T TIGR03817 270 --EGARTLTFVRSRRGAELVAAIARRLLGEVDPD-LAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDIS 346 (742)
T ss_pred --CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccc-cccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcc
Confidence 36799999999999999999998765432211 135678899999999999999999999999999999999999999
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCc
Q 041899 294 GIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTI 349 (650)
Q Consensus 294 ~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~ 349 (650)
++++||+.| .|.+.++|+||+|||||.| .|.++.+.+.
T Consensus 347 ~vd~VI~~~------------------~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 347 GLDAVVIAG------------------FPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred cccEEEEeC------------------CCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 999999954 4899999999999999998 5888888753
No 32
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3e-36 Score=329.36 Aligned_cols=304 Identities=18% Similarity=0.226 Sum_probs=215.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
-.+++|.++++++.+++++++++||||||| +++|... .++.++|++|+++|+.|+++++.. +|.......|
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~~l~~ 83 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKA-SGIPATFLNS 83 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 468899999999999999999999999999 4555443 245789999999999999988854 5544322222
Q ss_pred eeecc------cccCCCCceEEEEChHHHHHHH--hcCC-CCCCCceEEecccccCCccc-cHH--HHHHHHHHhcCCCc
Q 041899 88 YSIRF------EDCTSEKTVLKYMTDGMVLREM--LSDP-KLESYSVLMVDEAHERTLST-DIL--LGIFKDLVRLRSDL 155 (650)
Q Consensus 88 ~~~~~------~~~~~~~~~i~~~T~~~Ll~~l--~~~~-~l~~~~~iIiDE~Her~~~~-d~l--l~~l~~~~~~~~~~ 155 (650)
..... ........+|+|+||+.+.... .... ...++++|||||||..+-.. ++. ...+..+....++.
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~ 163 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNV 163 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCC
Confidence 11100 0112345789999999864311 1111 46789999999999533221 222 22333444566889
Q ss_pred eEEEEccCCChH---HHHhhhCC-CCccccCCcccceeEEEecCCC-CchHHHHHHHHHHHHh-cCCCCCEEEEeCCHHH
Q 041899 156 KLLISSATLDAE---KFSAYFNF-APILRVPGRRYPVEIHYTKAPE-SNYIDAAIVTTLEIHA-TQASGDILVFLTGQEE 229 (650)
Q Consensus 156 kii~~SAT~~~~---~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~~~~ 229 (650)
+++++|||++.. .+.++++- .+.+.......| .+.|..... .+.... +..... ..++..+||||+++++
T Consensus 164 ~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~~~v~~~~~~~~~~----l~~~l~~~~~~~~~IIF~~s~~~ 238 (470)
T TIGR00614 164 PIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLYYEVRRKTPKILED----LLRFIRKEFKGKSGIIYCPSRKK 238 (470)
T ss_pred ceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcEEEEEeCCccHHHH----HHHHHHHhcCCCceEEEECcHHH
Confidence 999999999654 44445432 222222111111 112221111 122222 222222 2345567999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceec
Q 041899 230 IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWY 309 (650)
Q Consensus 230 i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~ 309 (650)
++.++..|.+. ++.+..+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 239 ~e~la~~L~~~---------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------- 300 (470)
T TIGR00614 239 SEQVTASLQNL---------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------- 300 (470)
T ss_pred HHHHHHHHHhc---------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE---------
Confidence 99999999865 678899999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 310 NPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 310 d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.|..+|.||+|||||.| +|.|+.+|+..+.
T Consensus 301 ---------~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~ 335 (470)
T TIGR00614 301 ---------YSLPKSMESYYQESGRAGRDGLPSECHLFYAPADI 335 (470)
T ss_pred ---------eCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHH
Confidence 444889999999999999999 7999999987654
No 33
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4e-36 Score=329.14 Aligned_cols=310 Identities=22% Similarity=0.308 Sum_probs=238.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCC-e-EEEecchHHHHHHHHHHHHHHhCCcc-C
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHG-K-VGCTQPRRVAAISVAARVSREMGVKL-G 83 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~-~-ilv~~P~r~la~q~~~~v~~~~~~~~-g 83 (650)
--..+.|..+++.+..++++++.|+|||||| +.+|.+-.-....... . +++++|||+||.|+++.+.. ++... +
T Consensus 50 ~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~-~~~~~~~ 128 (513)
T COG0513 50 EEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRK-LGKNLGG 128 (513)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHH-HHhhcCC
Confidence 3467899999999999999999999999999 5555443211001111 2 89999999999999987755 43333 2
Q ss_pred cEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce
Q 041899 84 HEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 84 ~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 156 (650)
..+...+.+.+ ......+|+|+|||.|+..+.... .+.++.++|+|||+ |.++..|...+-+.+....++.+
T Consensus 129 ~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~~~~p~~~q 207 (513)
T COG0513 129 LRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDDIEKILKALPPDRQ 207 (513)
T ss_pred ccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHHHHHHHHhCCcccE
Confidence 22222222211 112248999999999999887764 78999999999999 88888887777777766777899
Q ss_pred EEEEccCCChH--HHHh-hhCCCCccccC--C---cccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 157 LLISSATLDAE--KFSA-YFNFAPILRVP--G---RRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 157 ii~~SAT~~~~--~~~~-~~~~~~~~~~~--~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
++++|||++.. .++. ++.+...+.+. . ..-.++.+|......+ .....+..+......+++||||+++.
T Consensus 208 tllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~ 284 (513)
T COG0513 208 TLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKR 284 (513)
T ss_pred EEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHH
Confidence 99999999552 3333 34433333333 1 1234666666655433 23445555555555668999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccccee
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKW 308 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~ 308 (650)
.++.++..|... ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||||+|++||+
T Consensus 285 ~~~~l~~~l~~~---------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin-------- 347 (513)
T COG0513 285 LVEELAESLRKR---------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN-------- 347 (513)
T ss_pred HHHHHHHHHHHC---------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------
Confidence 999999999876 789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 309 YNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 309 ~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
++.|.+..+|+||+||+||.| .|.++.++++.
T Consensus 348 ----------yD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 348 ----------YDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred ----------ccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 666999999999999999999 79999999864
No 34
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5e-36 Score=337.96 Aligned_cols=306 Identities=16% Similarity=0.164 Sum_probs=215.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
-+++.|.++++++..++++++++|||+||| +++|.++. .+.+||+.|+++|+.++...+.. .|.......|
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L~s 532 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ-ANIPAASLSA 532 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEEEC
Confidence 478899999999999999999999999999 66766542 46899999999999876656543 3433322222
Q ss_pred eeeccc------cc--CCCCceEEEEChHHHH------HHHhcCCCCCCCceEEecccccCCcc-ccHHHHH--HHHHHh
Q 041899 88 YSIRFE------DC--TSEKTVLKYMTDGMVL------REMLSDPKLESYSVLMVDEAHERTLS-TDILLGI--FKDLVR 150 (650)
Q Consensus 88 ~~~~~~------~~--~~~~~~i~~~T~~~Ll------~~l~~~~~l~~~~~iIiDE~Her~~~-~d~ll~~--l~~~~~ 150 (650)
.....+ .. .....+|+|+||+.|. +.+..-.....+++|||||||.-+-. .||...+ +..+..
T Consensus 533 ~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~ 612 (1195)
T PLN03137 533 GMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQ 612 (1195)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHH
Confidence 111000 00 1245789999999874 22222223455899999999953322 2333222 233445
Q ss_pred cCCCceEEEEccCCChH---HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHh-cCCCCCEEEEeCC
Q 041899 151 LRSDLKLLISSATLDAE---KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHA-TQASGDILVFLTG 226 (650)
Q Consensus 151 ~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iLVF~~~ 226 (650)
..++.+++++|||++.. .+.+.++...............++|...+..... ...+..... ...++..||||.+
T Consensus 613 ~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~---le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 613 KFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKC---LEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred hCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhH---HHHHHHHHHhcccCCCceeEeCc
Confidence 66788999999999544 4555554322211111111122333322222211 112222222 2235678999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 227 QEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 227 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
+.+++.++..|.+. ++.+.++||+|++++|..+++.|..|+.+|||||+++++|||+|+|++||+
T Consensus 690 Rke~E~LAe~L~~~---------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH------ 754 (1195)
T PLN03137 690 RMDCEKVAERLQEF---------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH------ 754 (1195)
T ss_pred hhHHHHHHHHHHHC---------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE------
Confidence 99999999999864 788999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+..|.|..+|.||+|||||.| +|.|+.+|+..++
T Consensus 755 ------------ydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 755 ------------HSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred ------------cCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 444899999999999999999 7999999987665
No 35
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.4e-35 Score=332.45 Aligned_cols=304 Identities=19% Similarity=0.269 Sum_probs=218.1
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHH--HHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTT--QIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
..++.|+++++++.+++++++++|||+|||. ++|..+. ++.++|++|+++|+.|+.+.+.. .|.......+
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~-~gi~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA-NGVAAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH-cCCcEEEEcC
Confidence 4779999999999999999999999999994 5665432 45789999999999999988854 4543322211
Q ss_pred eeec------ccccCCCCceEEEEChHHHHHH-HhcCCCCCCCceEEecccccCCccc-cH--HHHHHHHHHhcCCCceE
Q 041899 88 YSIR------FEDCTSEKTVLKYMTDGMVLRE-MLSDPKLESYSVLMVDEAHERTLST-DI--LLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 88 ~~~~------~~~~~~~~~~i~~~T~~~Ll~~-l~~~~~l~~~~~iIiDE~Her~~~~-d~--ll~~l~~~~~~~~~~ki 157 (650)
.... .........+++|+||+.+... +.......++++|||||||..+..+ ++ ....+..+....++.++
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~ 177 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcE
Confidence 1111 1112234568999999987632 2222234578999999999544322 22 22334445556688999
Q ss_pred EEEccCCChHH---HHhhhC-CCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 041899 158 LISSATLDAEK---FSAYFN-FAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETV 233 (650)
Q Consensus 158 i~~SAT~~~~~---~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~ 233 (650)
+++|||++... +...++ ..|.+.......| .+.|......... ..+........++++||||+++++++.+
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~v~~~~~~~----~~l~~~l~~~~~~~~IIFc~tr~~~e~l 252 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYTLVEKFKPL----DQLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceeeeeeccchH----HHHHHHHHhcCCCCEEEEECcHHHHHHH
Confidence 99999996543 334433 2333322221111 1222211111112 2233333345578999999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCC
Q 041899 234 EEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKT 313 (650)
Q Consensus 234 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~ 313 (650)
+..|.+. ++.+..+||+|++++|.++++.|..|+.+|||||+++++|||+|+|++||+
T Consensus 253 a~~L~~~---------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~------------- 310 (607)
T PRK11057 253 AARLQSR---------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH------------- 310 (607)
T ss_pred HHHHHhC---------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE-------------
Confidence 9999875 678999999999999999999999999999999999999999999999999
Q ss_pred CcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 314 GMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 314 ~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.|..+|.||+|||||.| +|.|+.+|+..+.
T Consensus 311 -----~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~ 345 (607)
T PRK11057 311 -----FDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (607)
T ss_pred -----eCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHH
Confidence 444889999999999999999 7999999988764
No 36
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=314.55 Aligned_cols=474 Identities=19% Similarity=0.240 Sum_probs=316.0
Q ss_pred chHHHHHHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHhcccC---------CCCeEEEecchHHHHHHHHHHHHHHhC-
Q 041899 11 IYHYREQVLRAV-QENQVVVIVGETGSGKTTQIPQYLHEAGYT---------KHGKVGCTQPRRVAAISVAARVSREMG- 79 (650)
Q Consensus 11 l~~~q~~~l~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~~---------~~~~ilv~~P~r~la~q~~~~v~~~~~- 79 (650)
+...|.++.+.. ..+.|.|||||||||||-++.+.++..... ++-+|+|++|+++||.++++.+.+.++
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 567788888875 578899999999999997777777654221 233999999999999999999988764
Q ss_pred --CccCcEeeeeecccccCCCCceEEEEChHHH---HHHHhcCC-CCCCCceEEecccc----cCCccccHHHHHHHHHH
Q 041899 80 --VKLGHEVGYSIRFEDCTSEKTVLKYMTDGMV---LREMLSDP-KLESYSVLMVDEAH----ERTLSTDILLGIFKDLV 149 (650)
Q Consensus 80 --~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~L---l~~l~~~~-~l~~~~~iIiDE~H----er~~~~d~ll~~l~~~~ 149 (650)
..+++..|..-- ....-..++|+++||+.. .|....+. .++.+.+|||||+| +|+...+.+.+...+..
T Consensus 191 ~gi~v~ELTGD~ql-~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~v 269 (1230)
T KOG0952|consen 191 LGISVRELTGDTQL-TKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLV 269 (1230)
T ss_pred ccceEEEecCcchh-hHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHH
Confidence 344444442111 111246799999999743 44443333 57889999999999 68888777777666555
Q ss_pred h-cCCCceEEEEccCC-ChHHHHhhhCCCC---ccccCC--cccceeEEEecCCCC--chH-----HHHHHHHHHHHhcC
Q 041899 150 R-LRSDLKLLISSATL-DAEKFSAYFNFAP---ILRVPG--RRYPVEIHYTKAPES--NYI-----DAAIVTTLEIHATQ 215 (650)
Q Consensus 150 ~-~~~~~kii~~SAT~-~~~~~~~~~~~~~---~~~~~~--~~~~v~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~ 215 (650)
. ....+|+|++|||+ |.++++.|++..| ++..++ |+.|.+..+...+.. ... +.....+.+.+ .
T Consensus 270 essqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~--~ 347 (1230)
T KOG0952|consen 270 ESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL--Q 347 (1230)
T ss_pred HhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH--H
Confidence 4 45679999999999 9999999998643 333333 445566666544333 111 11222333333 3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCC-----C---------ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEE
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKI-----G---------ELIVCPVYANLPTELQAKIFVPTPDGARKVVL 281 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~-----~---------~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilv 281 (650)
.+.+++|||+++++..+.|+.|.+.....+... + ......+|+||..++|..+++.|..|.++|++
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 478999999999999999999988765432211 0 13456689999999999999999999999999
Q ss_pred eCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcccc--cccc
Q 041899 282 ATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSY--QEDM 356 (650)
Q Consensus 282 aT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~--~~~~ 356 (650)
||.+++.|+|+|+-.++|- | ++.||+..|. -.-.+....+|..|||||++ .|..+.+-+.+.. ...+
T Consensus 428 cTaTLAwGVNLPA~aViIK-G---T~~ydsskg~----f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sL 499 (1230)
T KOG0952|consen 428 CTATLAWGVNLPAYAVIIK-G---TQVYDSSKGS----FVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESL 499 (1230)
T ss_pred ecceeeeccCCcceEEEec-C---CcccccccCc----eeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHH
Confidence 9999999999997766664 3 7889998873 33577889999999999998 5766665443321 1112
Q ss_pred C---------------CCCCcccc---ccChhHHHHHHHhc------CCCCCCC----CCCC-CCChH-----HHHHHHH
Q 041899 357 E---------------DNTVPEIQ---RTNLANVILILKNL------GIDDLLN----FDFL-DSPPQ-----ELLRKAL 402 (650)
Q Consensus 357 ~---------------~~~~pei~---r~~l~~~~L~l~~~------~~~~~~~----~~~~-~~p~~-----~~i~~a~ 402 (650)
- ++-..||. -+++++.+=.++.- + .++.. ...+ ..|.. +.+..++
T Consensus 500 l~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~-KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~ 578 (1230)
T KOG0952|consen 500 LTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMR-KNPMAYGISYEELEPDPRLESHRRELCLVAA 578 (1230)
T ss_pred HcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEec-cChHHhhhhhhcccCCchHHHHHHHHHHHHH
Confidence 2 22222332 12333333333221 1 01111 1111 12221 3344566
Q ss_pred HHHHHcCCC--CCCC---CccHHHHHhccCCCChHHHHHHHhhcc-ccChHHHHHHHHhhhcCCCccccCcchHHHHH--
Q 041899 403 ELLYALGAL--NQVG---ELTKVGRQMAEFPLDPMLSKMIVASDK-FKCSNEIITIAALLSVGNSVFYRPKNKKFLAD-- 474 (650)
Q Consensus 403 ~~L~~~g~l--~~~~---~lT~lG~~~~~~p~~p~~~~~l~~~~~-~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~-- 474 (650)
..|.....+ |..+ ..|++||.++.+++.....+.+..... +--.++++.++++-++.+-+=++..+++...+
T Consensus 579 ~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~ 658 (1230)
T KOG0952|consen 579 MELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELN 658 (1230)
T ss_pred HHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHH
Confidence 666555433 4332 589999999999999999999999998 77788999999988775544444333332221
Q ss_pred ---HHHhcccCCCCCCHHHHHHHHHH
Q 041899 475 ---NARMNFYQGDAGDHIALLNVYNS 497 (650)
Q Consensus 475 ---~~~~~~~~~~~sD~~~~l~~~~~ 497 (650)
..+..|.. ..++...++++|..
T Consensus 659 ~~~~~~~~~~~-~~gk~nil~q~~Is 683 (1230)
T KOG0952|consen 659 EDSCEKYPFGG-EKGKVNILLQAYIS 683 (1230)
T ss_pred hcccccccccc-cchhHHHHHHhhhh
Confidence 11223333 34677777766643
No 37
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.5e-34 Score=335.11 Aligned_cols=313 Identities=20% Similarity=0.175 Sum_probs=214.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--------CCCCeEEEecchHHHHHHHHHHHHH------
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--------TKHGKVGCTQPRRVAAISVAARVSR------ 76 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--------~~~~~ilv~~P~r~la~q~~~~v~~------ 76 (650)
++++|.++++.+.++++++++||||||||..+.+.++.... .++.+++|++|+|+|+.|+++++.+
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999665555443211 1234799999999999999886542
Q ss_pred ----HhCCcc-CcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccccCCc--cccH
Q 041899 77 ----EMGVKL-GHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAHERTL--STDI 140 (650)
Q Consensus 77 ----~~~~~~-g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~--~~d~ 140 (650)
.+|..+ +..++....... ......+|+++||+.|...+.... .++++++|||||+|+-.- ....
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 123333 223332111111 112356899999999865553322 478999999999994221 1222
Q ss_pred HHHHHHHHHhc-CCCceEEEEccCC-ChHHHHhhhCCC-------CccccCC---cccceeEEEec-----CCCCchHHH
Q 041899 141 LLGIFKDLVRL-RSDLKLLISSATL-DAEKFSAYFNFA-------PILRVPG---RRYPVEIHYTK-----APESNYIDA 203 (650)
Q Consensus 141 ll~~l~~~~~~-~~~~kii~~SAT~-~~~~~~~~~~~~-------~~~~~~~---~~~~v~~~~~~-----~~~~~~~~~ 203 (650)
+...+.++... .++.++|++|||+ +.+.+.+|+++. ++..+.. +.+++.+.... .........
T Consensus 193 l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~ 272 (876)
T PRK13767 193 LSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEA 272 (876)
T ss_pred HHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHH
Confidence 23333444333 3678999999999 778899988642 1111111 11222221110 011111122
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 041899 204 AIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLAT 283 (650)
Q Consensus 204 ~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT 283 (650)
....+.... ...+++||||+|+..++.++..|.+..... ..+..+..+||+|+.++|..+++.|++|..+|||||
T Consensus 273 l~~~L~~~i--~~~~~~LVF~nTr~~ae~la~~L~~~~~~~---~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaT 347 (876)
T PRK13767 273 LYETLHELI--KEHRTTLIFTNTRSGAERVLYNLRKRFPEE---YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSS 347 (876)
T ss_pred HHHHHHHHH--hcCCCEEEEeCCHHHHHHHHHHHHHhchhh---ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 222232322 236789999999999999999998753211 123568899999999999999999999999999999
Q ss_pred CCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC----CcEEEEe
Q 041899 284 NIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG----PGKCFRL 346 (650)
Q Consensus 284 ~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~----~G~~~~l 346 (650)
+++++|||+|++++||+ ...|.|.++|+||+||+||.+ .|.++..
T Consensus 348 s~Le~GIDip~Vd~VI~------------------~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 348 TSLELGIDIGYIDLVVL------------------LGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred ChHHhcCCCCCCcEEEE------------------eCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999998 444889999999999999874 3666654
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.1e-34 Score=326.08 Aligned_cols=303 Identities=19% Similarity=0.224 Sum_probs=215.7
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
..++.|.++++++.+++++++++|||+||| +++|..+ .++.++|++|+++|+.|+++.+.. +|..+....+
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~------~~g~~lVisPl~sL~~dq~~~l~~-~gi~~~~~~s 85 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL------LKGLTVVISPLISLMKDQVDQLRA-AGVAAAYLNS 85 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH------cCCcEEEEcCCHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 478899999999999999999999999999 4555443 246789999999999999988855 5544322111
Q ss_pred eeeccc-------ccCCCCceEEEEChHHHHHHH-hcCCCCCCCceEEecccccCCccc-cH--HHHHHHHHHhcCCCce
Q 041899 88 YSIRFE-------DCTSEKTVLKYMTDGMVLREM-LSDPKLESYSVLMVDEAHERTLST-DI--LLGIFKDLVRLRSDLK 156 (650)
Q Consensus 88 ~~~~~~-------~~~~~~~~i~~~T~~~Ll~~l-~~~~~l~~~~~iIiDE~Her~~~~-d~--ll~~l~~~~~~~~~~k 156 (650)
..... .......+|+|+||+.+.... .......++++|||||||..+... ++ ....+..+....++.+
T Consensus 86 -~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 86 -TLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred -CCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCC
Confidence 11111 112345689999999875422 222245689999999999544222 22 2233444444556777
Q ss_pred EEEEccCCChH---HHHhhhCCC-CccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 041899 157 LLISSATLDAE---KFSAYFNFA-PILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIET 232 (650)
Q Consensus 157 ii~~SAT~~~~---~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~ 232 (650)
++++|||++.. .+.++++.. +.....+. ....+.|......+... .+........+++.||||+++++++.
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~-~r~nl~~~v~~~~~~~~----~l~~~l~~~~~~~~IIf~~sr~~~e~ 239 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSF-DRPNLRFSVVKKNNKQK----FLLDYLKKHRGQSGIIYASSRKKVEE 239 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCC-CCCCcEEEEEeCCCHHH----HHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 99999999654 455555422 22211111 11222332222222222 22233333346789999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899 233 VEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK 312 (650)
Q Consensus 233 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~ 312 (650)
+++.|... ++.+..+||+|+.++|..+++.|.+|..+|||||+++++|||+|+|++||+.
T Consensus 240 la~~L~~~---------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~----------- 299 (591)
T TIGR01389 240 LAERLESQ---------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY----------- 299 (591)
T ss_pred HHHHHHhC---------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc-----------
Confidence 99999764 6778999999999999999999999999999999999999999999999993
Q ss_pred CCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 313 TGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+.|.|..+|.||+|||||.| +|.|+.+|+..+.
T Consensus 300 -------~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 300 -------DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred -------CCCCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 44889999999999999999 7999999987764
No 39
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=9.4e-34 Score=287.48 Aligned_cols=311 Identities=20% Similarity=0.251 Sum_probs=237.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHH--HhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYL--HEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l--~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
-+.+.|+..++.+..++++++.|-||+||| +++|.+= ....+. ++..++++.|||+||.|.+....+.+....+
T Consensus 104 ~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~ 183 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHES 183 (543)
T ss_pred chhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCC
Confidence 467889999999999999999999999999 6777652 222221 2338999999999999999888776655546
Q ss_pred cEeeeeeccccc------CCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCc
Q 041899 84 HEVGYSIRFEDC------TSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 84 ~~vg~~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 155 (650)
..+|+.+.+.+. .....+|+++|||.|+.++.+.+ ..++..++|+|||+ |-++..|-..+.+.+.......
T Consensus 184 ~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD-rlLd~GF~~di~~Ii~~lpk~r 262 (543)
T KOG0342|consen 184 ITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD-RLLDIGFEEDVEQIIKILPKQR 262 (543)
T ss_pred cceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-hhhhcccHHHHHHHHHhccccc
Confidence 667766665543 22478999999999999999877 46777899999999 8888877777777666677788
Q ss_pred eEEEEccCCC--hHHHHhhh-CCCCc-cccC-Ccc----cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 041899 156 KLLISSATLD--AEKFSAYF-NFAPI-LRVP-GRR----YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTG 226 (650)
Q Consensus 156 kii~~SAT~~--~~~~~~~~-~~~~~-~~~~-~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~ 226 (650)
|..++|||.+ +++++... ...++ +.+. +.. -.++.-|...+....+... -..++-+. ...+|+|||+|
T Consensus 263 qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll-~~~LKk~~--~~~KiiVF~sT 339 (543)
T KOG0342|consen 263 QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL-YTFLKKNI--KRYKIIVFFST 339 (543)
T ss_pred eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH-HHHHHHhc--CCceEEEEech
Confidence 9999999994 34555432 22222 2221 111 1244445555544432222 22222222 23799999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 227 QEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 227 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
...+..+++.|... ++.+..+||+.++..|..++..|.+.+.-|||||+++++|+|+|+|+.||+
T Consensus 340 ~~~vk~~~~lL~~~---------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ------ 404 (543)
T KOG0342|consen 340 CMSVKFHAELLNYI---------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ------ 404 (543)
T ss_pred hhHHHHHHHHHhhc---------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE------
Confidence 99999999999854 788999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|.++.+|+||.||+||.| .|..+.+..+.+
T Consensus 405 ------------~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 405 ------------YDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred ------------eCCCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 444899999999999999988 689888876654
No 40
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=290.33 Aligned_cols=329 Identities=20% Similarity=0.257 Sum_probs=240.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHH-H--hcccCCCC--eEEEecchHHHHHHHHHHHHHHh----C
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYL-H--EAGYTKHG--KVGCTQPRRVAAISVAARVSREM----G 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l-~--~~~~~~~~--~ilv~~P~r~la~q~~~~v~~~~----~ 79 (650)
..+.|...++.+.++++|++.++|||||| +++|.+= . .....+.+ ..+++.|||+|+.|+.+-+.... +
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~ 108 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPN 108 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhc
Confidence 57889999999999999999999999999 6666551 1 12122223 68999999999999985554322 2
Q ss_pred CccCcEeee-eeccc--ccCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccccCCccccHHHHHHHHHHhcCC
Q 041899 80 VKLGHEVGY-SIRFE--DCTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 80 ~~~g~~vg~-~~~~~--~~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 153 (650)
..+...+|- .+..+ .....+.+|+++|||.|+..+.... .+++++++|+|||+ |-++..|-..+-..+.....
T Consensus 109 l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmgFe~~~n~ILs~LPK 187 (567)
T KOG0345|consen 109 LNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMGFEASVNTILSFLPK 187 (567)
T ss_pred cceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhcccHHHHHHHHHHhccc
Confidence 223334442 11111 1123567899999999999887643 35689999999999 88888887666666555667
Q ss_pred CceEEEEccCC--ChHHHHhhhCCCCc-cccCCcc---cc--eeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 041899 154 DLKLLISSATL--DAEKFSAYFNFAPI-LRVPGRR---YP--VEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLT 225 (650)
Q Consensus 154 ~~kii~~SAT~--~~~~~~~~~~~~~~-~~~~~~~---~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 225 (650)
.-+.=++|||. ..+++....-..|+ +.+.... .| +..+|........ ...++++..+...+++|||.+
T Consensus 188 QRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK----~~~lv~~L~~~~~kK~iVFF~ 263 (567)
T KOG0345|consen 188 QRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK----LSQLVHLLNNNKDKKCIVFFP 263 (567)
T ss_pred ccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH----HHHHHHHHhccccccEEEEec
Confidence 77888999999 34455554333332 2332211 23 6667766554333 334555555566789999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccc
Q 041899 226 GQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSK 305 (650)
Q Consensus 226 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k 305 (650)
|-..++..+..+.... ....++.+||.|....|.++++.|.+-...+++||+++++|+|||+|++||+
T Consensus 264 TCasVeYf~~~~~~~l-------~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----- 331 (567)
T KOG0345|consen 264 TCASVEYFGKLFSRLL-------KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----- 331 (567)
T ss_pred CcchHHHHHHHHHHHh-------CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe-----
Confidence 9999999999888763 3678999999999999999999999888889999999999999999999998
Q ss_pred ceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEee--CccccccccCCCCCccccccCh
Q 041899 306 MKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLY--TINSYQEDMEDNTVPEIQRTNL 369 (650)
Q Consensus 306 ~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~--~~~~~~~~~~~~~~pei~r~~l 369 (650)
++.|.+.++|.||+||+||.| .|..+.+. .+++|.+.|.....|++.+...
T Consensus 332 -------------~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~~~ 385 (567)
T KOG0345|consen 332 -------------FDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERIDT 385 (567)
T ss_pred -------------cCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhhcc
Confidence 555999999999999999988 46655554 4556666666666677665443
No 41
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=288.06 Aligned_cols=308 Identities=20% Similarity=0.269 Sum_probs=236.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcc---------cCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAG---------YTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~---------~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
-.+.|..+++...+++++|.++.|||||| +.+|+.+.-.. ...++..+++.|+|+|+.|+.+.-. .++
T Consensus 268 ptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~-kf~ 346 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETN-KFG 346 (673)
T ss_pred CchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHH-Hhc
Confidence 46788899999999999999999999999 66776654221 1235589999999999999986653 355
Q ss_pred CccCc----Eeeeeecccc--cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 80 VKLGH----EVGYSIRFED--CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 80 ~~~g~----~vg~~~~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
..+|. .||-.-..+. ..+..+.|+++|||.|+..+-+.- .++++.++|+||++ |.++..|-..+.+.+....
T Consensus 347 ~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~dv~~iL~~mP 425 (673)
T KOG0333|consen 347 KPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMP 425 (673)
T ss_pred ccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccHHHHHHHHhCC
Confidence 55554 3442222222 355789999999999988775433 58899999999999 7777766666555554321
Q ss_pred -------------------------CCceEEEEccCCC--hHHH-HhhhCCCCccccC--Ccccc-eeEEEecCCCCchH
Q 041899 153 -------------------------SDLKLLISSATLD--AEKF-SAYFNFAPILRVP--GRRYP-VEIHYTKAPESNYI 201 (650)
Q Consensus 153 -------------------------~~~kii~~SAT~~--~~~~-~~~~~~~~~~~~~--~~~~~-v~~~~~~~~~~~~~ 201 (650)
.-.+.+.+|||+. ++.+ ..||..+-++.+. |+..| ++..+...++.+.
T Consensus 426 ssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k- 504 (673)
T KOG0333|consen 426 SSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEK- 504 (673)
T ss_pred ccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHH-
Confidence 1156889999994 4444 4577655444443 33333 4444444443333
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEE
Q 041899 202 DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVL 281 (650)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilv 281 (650)
...+..+....-..+++||+|+++.++.+++.|.+. ++.+..|||+-++++|..+++.|++|...|+|
T Consensus 505 ---~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~---------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlV 572 (673)
T KOG0333|consen 505 ---RKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA---------GYKVTTLHGGKSQEQRENALADFREGTGDILV 572 (673)
T ss_pred ---HHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc---------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEE
Confidence 334445555445679999999999999999999886 79999999999999999999999999999999
Q ss_pred eCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 282 ATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 282 aT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
||++|++|||||+|.+||+ +++..|...|.||+||+||.| .|.++.++++++
T Consensus 573 aTDvAgRGIDIpnVSlVin------------------ydmaksieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 573 ATDVAGRGIDIPNVSLVIN------------------YDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred EecccccCCCCCccceeee------------------cchhhhHHHHHHHhccccccccCceeEEEeccch
Confidence 9999999999999999999 677899999999999999999 699999999887
No 42
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=289.01 Aligned_cols=312 Identities=17% Similarity=0.242 Sum_probs=247.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHH--HHhcccCC--CCeEEEecchHHHHHHHHHHHHHH---hCC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQY--LHEAGYTK--HGKVGCTQPRRVAAISVAARVSRE---MGV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~--l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~---~~~ 80 (650)
-+...|.+.+...++|++++-.|-|||||| +++|.. ++...|.. +--++++.|||+||.|+.+.+.+. -+.
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~f 170 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDF 170 (758)
T ss_pred cHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcccc
Confidence 467789999999999999999999999999 666654 34444443 227899999999999999777552 234
Q ss_pred ccCcEee-eeecccccCCCCceEEEEChHHHHHHHhcCCCC--CCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 81 KLGHEVG-YSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKL--ESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 81 ~~g~~vg-~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l--~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
..|..+| -.+.++...-...+|++||||.|++.|...|.+ .++.++|+|||+ |.+++.|--.+-..+-...+..|.
T Consensus 171 SaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~LDMGFk~tL~~Ii~~lP~~RQT 249 (758)
T KOG0343|consen 171 SAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RMLDMGFKKTLNAIIENLPKKRQT 249 (758)
T ss_pred ccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHHHHhHHHHHHHHHHhCChhhee
Confidence 4555555 344445445567899999999999999998854 678899999999 888888766655555557778899
Q ss_pred EEEccCC--ChHHHHhhhCCCC-ccccC-----CcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 041899 158 LISSATL--DAEKFSAYFNFAP-ILRVP-----GRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEE 229 (650)
Q Consensus 158 i~~SAT~--~~~~~~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 229 (650)
+++|||. .+.++++.--..| .+.+. +.+-.+..+|...+..+.++ .++....+....++|||+.|-.+
T Consensus 250 LLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~----~L~sFI~shlk~K~iVF~SscKq 325 (758)
T KOG0343|consen 250 LLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID----MLWSFIKSHLKKKSIVFLSSCKQ 325 (758)
T ss_pred eeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH----HHHHHHHhccccceEEEEehhhH
Confidence 9999998 6677777643333 33222 22223556666665554444 55566666667899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceec
Q 041899 230 IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWY 309 (650)
Q Consensus 230 i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~ 309 (650)
+..+++.+++. .|++.+..+||.|++..|..++..|-...--|++||+++++|+|+|.|++||.
T Consensus 326 vkf~~e~F~rl-------rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------- 389 (758)
T KOG0343|consen 326 VKFLYEAFCRL-------RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------- 389 (758)
T ss_pred HHHHHHHHHhc-------CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE---------
Confidence 99999998875 35899999999999999999999998888889999999999999999999998
Q ss_pred cCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 310 NPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 310 d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
+++|.+.++|+||+||+.|.. .|.|+.+.++.+
T Consensus 390 ---------~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 390 ---------VDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred ---------ecCchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 788999999999999999998 699999988766
No 43
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.2e-33 Score=283.37 Aligned_cols=317 Identities=21% Similarity=0.206 Sum_probs=231.9
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.+..+.||..+......+ +++|+.|||-|||+++...+.......+++++++.||+-|+.|.++.+.+.+|.+.+..+.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 456778999998876665 6999999999999888877775433345589999999999999999999999887665443
Q ss_pred eee--cccc--cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 88 YSI--RFED--CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 88 ~~~--~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
..- +-+. ..-.+.+|+++||+.+.+.+.... ++.+++++|||||| |....-....+.+.......+..+++|||
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgLTA 170 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGLTA 170 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEEec
Confidence 221 1111 112467899999999999887766 78999999999999 88777677777777777788899999999
Q ss_pred CC--ChHHHHhhhCCCCccccCC--------c--ccceeEEEecCCC---------------------------------
Q 041899 163 TL--DAEKFSAYFNFAPILRVPG--------R--RYPVEIHYTKAPE--------------------------------- 197 (650)
Q Consensus 163 T~--~~~~~~~~~~~~~~~~~~~--------~--~~~v~~~~~~~~~--------------------------------- 197 (650)
|+ +.+.+++...+-.+-.+.- + ...+++.+.....
T Consensus 171 SPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~ 250 (542)
T COG1111 171 SPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP 250 (542)
T ss_pred CCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc
Confidence 99 7777777654322211110 0 1123333322000
Q ss_pred ---CchHH------------------------------------------------------------------------
Q 041899 198 ---SNYID------------------------------------------------------------------------ 202 (650)
Q Consensus 198 ---~~~~~------------------------------------------------------------------------ 202 (650)
.++..
T Consensus 251 ~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~ 330 (542)
T COG1111 251 VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYF 330 (542)
T ss_pred ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhh
Confidence 00000
Q ss_pred -HH--------------------HHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEe------
Q 041899 203 -AA--------------------IVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCP------ 255 (650)
Q Consensus 203 -~~--------------------~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~------ 255 (650)
.+ ...+.+.....++.+++||.+-++.++.+...|.+... ...+..
T Consensus 331 ~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-------~~~~rFiGQa~r 403 (542)
T COG1111 331 KRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-------KARVRFIGQASR 403 (542)
T ss_pred HHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-------cceeEEeecccc
Confidence 00 00000111123456899999999999999999987532 121111
Q ss_pred -ecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccc
Q 041899 256 -VYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGR 334 (650)
Q Consensus 256 -lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GR 334 (650)
...||++.+|.++++.|+.|..+|||||+++|.|+|||++++||- |+ .-.|..-++||.||
T Consensus 404 ~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif--------YE----------pvpSeIR~IQR~GR 465 (542)
T COG1111 404 EGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF--------YE----------PVPSEIRSIQRKGR 465 (542)
T ss_pred ccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE--------ec----------CCcHHHHHHHhhCc
Confidence 236899999999999999999999999999999999999999996 33 45788899999999
Q ss_pred cCCCCCcEEEEeeCccc
Q 041899 335 SGRTGPGKCFRLYTINS 351 (650)
Q Consensus 335 aGR~~~G~~~~l~~~~~ 351 (650)
+||..+|.+|.|+++.+
T Consensus 466 TGR~r~Grv~vLvt~gt 482 (542)
T COG1111 466 TGRKRKGRVVVLVTEGT 482 (542)
T ss_pred cccCCCCeEEEEEecCc
Confidence 99999999999998874
No 44
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-33 Score=264.03 Aligned_cols=310 Identities=16% Similarity=0.252 Sum_probs=232.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhc-cc-CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEA-GY-TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~-~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
....|+.++..+.+++++|.++..|+|||..+..-++.. .. .+...++++.|+|+||.|+.+-+.. +|...+..+--
T Consensus 50 PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~ha 128 (400)
T KOG0328|consen 50 PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHA 128 (400)
T ss_pred chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHH-hcccccceEEE
Confidence 356799999999999999999999999993333222222 11 1234899999999999999977754 55444332222
Q ss_pred eecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 89 SIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 89 ~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+.+.+ +.....+++..|||..+.++.... .-+.+.++|+||++|. ++-.+-..+........|+.|++++|
T Consensus 129 cigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem-L~kgfk~Qiydiyr~lp~~~Qvv~~S 207 (400)
T KOG0328|consen 129 CIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM-LNKGFKEQIYDIYRYLPPGAQVVLVS 207 (400)
T ss_pred EecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH-HHhhHHHHHHHHHHhCCCCceEEEEe
Confidence 222211 223467899999999998876554 4678999999999953 33345455555555578899999999
Q ss_pred cCCChH--HHHhhhCCCCcccc---CCcccc-eeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 162 ATLDAE--KFSAYFNFAPILRV---PGRRYP-VEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 162 AT~~~~--~~~~~~~~~~~~~~---~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
||++-+ ...+.|...|+-.. ++.+.. ++.+|.....+++.. ..+..+.....-.+.+|||+|+..+..+.+
T Consensus 208 ATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKf---dtLcdLYd~LtItQavIFcnTk~kVdwLte 284 (400)
T KOG0328|consen 208 ATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKF---DTLCDLYDTLTITQAVIFCNTKRKVDWLTE 284 (400)
T ss_pred ccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhH---hHHHHHhhhhehheEEEEecccchhhHHHH
Confidence 999654 45566655554222 222222 556666655454433 344555554555789999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.+++. .+.+..+||+|+.++|.+++..|++|+.+|+++|++-++|+|+|.|..||+
T Consensus 285 km~~~---------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------------- 340 (400)
T KOG0328|consen 285 KMREA---------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------------- 340 (400)
T ss_pred HHHhh---------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe---------------
Confidence 88875 788999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.....|+||+||.||.| .|.++.+...++.
T Consensus 341 ---YDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~ 375 (400)
T KOG0328|consen 341 ---YDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDL 375 (400)
T ss_pred ---cCCCccHHHHhhhhccccccCCcceEEEEecHHHH
Confidence 566899999999999999999 6999998877654
No 45
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=286.80 Aligned_cols=311 Identities=18% Similarity=0.264 Sum_probs=224.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-CCC----CeEEEecchHHHHHHHHHHH---HHHhCCcc
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-TKH----GKVGCTQPRRVAAISVAARV---SREMGVKL 82 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~----~~ilv~~P~r~la~q~~~~v---~~~~~~~~ 82 (650)
..+.|...++..+-+++++-+|.||||||..+.+.+++..+ .+. .+|+|++|||+|+.|++.-. ++.....+
T Consensus 204 PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~ 283 (691)
T KOG0338|consen 204 PTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITV 283 (691)
T ss_pred CCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcccee
Confidence 45779999999899999999999999999444444444422 222 29999999999999987443 33334444
Q ss_pred CcEee-eeeccc-ccCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 83 GHEVG-YSIRFE-DCTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 83 g~~vg-~~~~~~-~~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
|..+| ..++.. .......+|+++|||.|...+.+.| .+.++.++|+|||+ |.+...|...+-..+.....+.|.+
T Consensus 284 ~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD-RMLeegFademnEii~lcpk~RQTm 362 (691)
T KOG0338|consen 284 GLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD-RMLEEGFADEMNEIIRLCPKNRQTM 362 (691)
T ss_pred eeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH-HHHHHHHHHHHHHHHHhccccccce
Confidence 44444 111111 1123568899999999999999988 58899999999999 8888766555444444455678999
Q ss_pred EEccCC--ChHHHHhhhCCCCc-cccC-Ccc--cceeEEEec-CCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 159 ISSATL--DAEKFSAYFNFAPI-LRVP-GRR--YPVEIHYTK-APESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 159 ~~SAT~--~~~~~~~~~~~~~~-~~~~-~~~--~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
++|||| ..+.+...--+.|+ +.+. ... ..+...|.. .+..+.....+ +..+....-...++||+.+++.+.
T Consensus 363 LFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~--l~~l~~rtf~~~~ivFv~tKk~AH 440 (691)
T KOG0338|consen 363 LFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAM--LASLITRTFQDRTIVFVRTKKQAH 440 (691)
T ss_pred eehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHH--HHHHHHHhcccceEEEEehHHHHH
Confidence 999999 45667665444443 1111 111 112222221 11111111111 111221122567999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 232 TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
++.-.|--. ++.+.-+||+|++++|...++.|+++++.|||||++|.+|+||++|..|||
T Consensus 441 Rl~IllGLl---------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----------- 500 (691)
T KOG0338|consen 441 RLRILLGLL---------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----------- 500 (691)
T ss_pred HHHHHHHHh---------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe-----------
Confidence 987766443 678888999999999999999999999999999999999999999999999
Q ss_pred CCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
+.+|.+...|+||.||+.|.| .|..+.|..+++
T Consensus 501 -------y~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 501 -------YAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred -------ccCchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 777999999999999999999 699999988764
No 46
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-33 Score=270.56 Aligned_cols=309 Identities=21% Similarity=0.253 Sum_probs=233.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC-C-CCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT-K-HGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~-~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
..+.|+.+++.|.+|+++|=+|.||||||+.+.+.+++.... + +...+++.|||+||.|+++++.. +|...+..+..
T Consensus 30 pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~a-lGk~l~lK~~v 108 (442)
T KOG0340|consen 30 PTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIA-LGKLLNLKVSV 108 (442)
T ss_pred CCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHH-hcccccceEEE
Confidence 457899999999999999999999999997777776665222 2 33789999999999999999954 66666655544
Q ss_pred eeccccc------CCCCceEEEEChHHHHHHHhcCC-----CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 89 SIRFEDC------TSEKTVLKYMTDGMVLREMLSDP-----KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 89 ~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~-----~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
.+.+.+. .+.+.+++++|||.+-..+.+++ .+.++.++|+|||+ |.+..+|-..+--.........+.
T Consensus 109 ivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~~RQt 187 (442)
T KOG0340|consen 109 IVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPKPRQT 187 (442)
T ss_pred EEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccCCCccce
Confidence 4444433 35678999999999988887763 47889999999999 777776644433333334445589
Q ss_pred EEEccCCChHHHHhhhCCCCccc--------cCCccc--ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 158 LISSATLDAEKFSAYFNFAPILR--------VPGRRY--PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 158 i~~SAT~~~~~~~~~~~~~~~~~--------~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
+++|||++. .+...++ +|+-. +++... .....|...+. +..+..+..++.....++.+.++||+++.
T Consensus 188 LlfSATitd-~i~ql~~-~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvntt 264 (442)
T KOG0340|consen 188 LLFSATITD-TIKQLFG-CPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTT 264 (442)
T ss_pred EEEEeehhh-HHHHhhc-CCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehh
Confidence 999999832 2333332 22111 111111 11222333321 22333344455555555689999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccce
Q 041899 228 EEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMK 307 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~ 307 (650)
.+++.++..|+.. ++.+..+||.|++.+|...+..|+++..+||+||++|.+|+|||.|..|||
T Consensus 265 r~cQ~l~~~l~~l---------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN------- 328 (442)
T KOG0340|consen 265 RECQLLSMTLKNL---------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN------- 328 (442)
T ss_pred HHHHHHHHHHhhh---------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe-------
Confidence 9999999999886 899999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 308 WYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 308 ~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|.++..|+||.||+.|.| .|..+.++++.+
T Consensus 329 -----------~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 329 -----------HDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred -----------cCCCCCHHHHHHhhcchhcccCCcceEEEechhh
Confidence 667999999999999999999 588888887544
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.5e-32 Score=311.07 Aligned_cols=301 Identities=18% Similarity=0.225 Sum_probs=215.1
Q ss_pred CCCchHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 8 TLPIYHYREQVLRAVQEN------QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
....++.|.++++.+.++ .+.+++||||||||..+..+++.. ..++.++++++||++||.|.++.+.+.++.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~a-l~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~- 526 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKA-VLDGKQVAVLVPTTLLAQQHFETFKERFAN- 526 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHH-HHhCCeEEEEeCcHHHHHHHHHHHHHHhcc-
Confidence 345689999999998764 689999999999996665555543 234579999999999999999999876542
Q ss_pred cCcEeeeeecccc----------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc
Q 041899 82 LGHEVGYSIRFED----------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL 151 (650)
Q Consensus 82 ~g~~vg~~~~~~~----------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 151 (650)
.+..++...++.. ......+|+++|+..+ ..+-.+.++++|||||+|..+.. ....+...
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~~~v~f~~L~llVIDEahrfgv~------~~~~L~~~ 596 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----QKDVKFKDLGLLIIDEEQRFGVK------QKEKLKEL 596 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----hCCCCcccCCEEEeecccccchh------HHHHHHhc
Confidence 2333332222111 1123578999999543 33446889999999999953322 22233335
Q ss_pred CCCceEEEEccCCChHHHHhhh-CCC--Ccccc-CCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 152 RSDLKLLISSATLDAEKFSAYF-NFA--PILRV-PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 152 ~~~~kii~~SAT~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
.++.++++||||+.+..+...+ +.. .++.. +....+++.++..... ..+. ..+.... ..+++++||||+.
T Consensus 597 ~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~i~---~~i~~el--~~g~qv~if~n~i 670 (926)
T TIGR00580 597 RTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-ELVR---EAIRREL--LRGGQVFYVHNRI 670 (926)
T ss_pred CCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCH-HHHH---HHHHHHH--HcCCeEEEEECCc
Confidence 6778999999999776654432 211 12222 2233466665543321 1111 1111111 2378999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccce
Q 041899 228 EEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMK 307 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~ 307 (650)
++++.+++.|++.. ++..+..+||+|+.++|.++++.|++|+.+|||||+++|+|||+|++++||..
T Consensus 671 ~~~e~l~~~L~~~~-------p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~------ 737 (926)
T TIGR00580 671 ESIEKLATQLRELV-------PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIE------ 737 (926)
T ss_pred HHHHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEe------
Confidence 99999999998752 36789999999999999999999999999999999999999999999999962
Q ss_pred eccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 308 WYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 308 ~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
|+. ..+.+++.||+||+||.| .|.||.+++..
T Consensus 738 --~a~---------~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 738 --RAD---------KFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred --cCC---------CCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 211 235678999999999998 79999998754
No 48
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.4e-32 Score=300.71 Aligned_cols=367 Identities=19% Similarity=0.193 Sum_probs=257.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC-------CCeEEEecchHHHHHHHHHHHHH---H
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK-------HGKVGCTQPRRVAAISVAARVSR---E 77 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-------~~~ilv~~P~r~la~q~~~~v~~---~ 77 (650)
---+.+.|.++++.+.+|++++|+||||||||..+-+.++...... +-.++|+.|.|+|.+++-+++.. +
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999954444443322211 22899999999999999998854 4
Q ss_pred hCCccCcEeeeeecccc--cCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccc-----cCCccccHHHHHHHH
Q 041899 78 MGVKLGHEVGYSIRFED--CTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAH-----ERTLSTDILLGIFKD 147 (650)
Q Consensus 78 ~~~~~g~~vg~~~~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~H-----er~~~~d~ll~~l~~ 147 (650)
+|.++....|.....+. ......+|+++||+.|.-.+.+.. .|.++.+|||||+| +|+....+.+..++.
T Consensus 100 ~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~ 179 (814)
T COG1201 100 LGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRE 179 (814)
T ss_pred cCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHh
Confidence 45555444443332222 223567899999999876665533 68999999999999 466666565555555
Q ss_pred HHhcCCCceEEEEccCC-ChHHHHhhhCCC----CccccCC-cccceeEEEecCCC---CchHHHHHHHHHHHHhcCCCC
Q 041899 148 LVRLRSDLKLLISSATL-DAEKFSAYFNFA----PILRVPG-RRYPVEIHYTKAPE---SNYIDAAIVTTLEIHATQASG 218 (650)
Q Consensus 148 ~~~~~~~~kii~~SAT~-~~~~~~~~~~~~----~~~~~~~-~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 218 (650)
+ .++++.|++|||. +++.+++|+.+. .++.+.+ +...+++....... ..........+.++... ..
T Consensus 180 l---~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ 254 (814)
T COG1201 180 L---AGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HR 254 (814)
T ss_pred h---CcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cC
Confidence 4 3389999999999 899999999654 3444443 33444444333221 11223334444444443 34
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEE
Q 041899 219 DILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYV 298 (650)
Q Consensus 219 ~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~V 298 (650)
.+|||+||+..++.++..|++.. ...+..+||+++.+.|..+++.+++|+.+++|||+.+|-|||+.+|+.|
T Consensus 255 ttLIF~NTR~~aE~l~~~L~~~~--------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlV 326 (814)
T COG1201 255 TTLIFTNTRSGAERLAFRLKKLG--------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLV 326 (814)
T ss_pred cEEEEEeChHHHHHHHHHHHHhc--------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEE
Confidence 89999999999999999998863 3678889999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC----CcEEEEeeCccccccc--------cCCCCCccccc
Q 041899 299 VDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG----PGKCFRLYTINSYQED--------MEDNTVPEIQR 366 (650)
Q Consensus 299 Id~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~----~G~~~~l~~~~~~~~~--------~~~~~~pei~r 366 (650)
|+ ...|.+.+.+.||+||+|+.- .|..|... .++..+. -.....+++..
T Consensus 327 Iq------------------~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~ 387 (814)
T COG1201 327 IQ------------------LGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED-RDDLLECLVLADLALEGKLERIKIPK 387 (814)
T ss_pred EE------------------eCCcHHHHHHhHhccccccccCCcccEEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCC
Confidence 99 445999999999999999765 34444332 2222111 11233566777
Q ss_pred cChhHHHHHHHhcCCCCCCC-----------CCCCCCChHHHHHHHHHHHHH
Q 041899 367 TNLANVILILKNLGIDDLLN-----------FDFLDSPPQELLRKALELLYA 407 (650)
Q Consensus 367 ~~l~~~~L~l~~~~~~~~~~-----------~~~~~~p~~~~i~~a~~~L~~ 407 (650)
.+|+-+.-++..+-+....+ .+|-+ -+.+.....++.|..
T Consensus 388 ~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~-L~~e~f~~v~~~l~~ 438 (814)
T COG1201 388 NPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYAD-LSREDFRLVLRYLAG 438 (814)
T ss_pred cchhHHHHHHHHHHhhCcCCHHHHHHHHHhcccccc-CCHHHHHHHHHHHhh
Confidence 77776666655543322111 13322 255777888888888
No 49
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=7.2e-32 Score=316.95 Aligned_cols=291 Identities=20% Similarity=0.224 Sum_probs=195.0
Q ss_pred EEcCCCChHHHHHHHHHHhccc------------CCCCeEEEecchHHHHHHHHHHHHHH----------hCC-ccCcEe
Q 041899 30 IVGETGSGKTTQIPQYLHEAGY------------TKHGKVGCTQPRRVAAISVAARVSRE----------MGV-KLGHEV 86 (650)
Q Consensus 30 i~apTGsGKT~~ip~~l~~~~~------------~~~~~ilv~~P~r~la~q~~~~v~~~----------~~~-~~g~~v 86 (650)
|++|||||||..+.+.+++... .++.+++|+.|+|+|+.|+.+++... +|. ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999555443333211 12458999999999999999887541 111 223444
Q ss_pred eeeecccc------cCCCCceEEEEChHHHHHHHhcC--CCCCCCceEEeccccc-----CCccccHHHHHHHHHHhcCC
Q 041899 87 GYSIRFED------CTSEKTVLKYMTDGMVLREMLSD--PKLESYSVLMVDEAHE-----RTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 87 g~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~--~~l~~~~~iIiDE~He-----r~~~~d~ll~~l~~~~~~~~ 153 (650)
+....... ......+|+++||+.|...+.+. ..++++++|||||+|+ |+......+..++.+ ...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l--~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL--LHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh--CCC
Confidence 42221111 12245789999999997766543 3689999999999994 333333333333332 245
Q ss_pred CceEEEEccCC-ChHHHHhhhCCC-Cc--cccC-CcccceeEEEecCCCCch---------------H----HHHHHHHH
Q 041899 154 DLKLLISSATL-DAEKFSAYFNFA-PI--LRVP-GRRYPVEIHYTKAPESNY---------------I----DAAIVTTL 209 (650)
Q Consensus 154 ~~kii~~SAT~-~~~~~~~~~~~~-~~--~~~~-~~~~~v~~~~~~~~~~~~---------------~----~~~~~~~~ 209 (650)
+.|+|++|||+ |.+.+++|++.. ++ +..+ .+..++++........+. . ......++
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il 238 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGIL 238 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHH
Confidence 78999999999 888999999753 32 2211 223344433211110000 0 00111122
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhc------------------------CCCCceEEEeecCCCCHHHH
Q 041899 210 EIHATQASGDILVFLTGQEEIETVEEILKERIRKLG------------------------TKIGELIVCPVYANLPTELQ 265 (650)
Q Consensus 210 ~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~------------------------~~~~~~~v~~lh~~l~~~~r 265 (650)
... ...+++|||+||+..++.++..|++...+.. .......+..+||+|++++|
T Consensus 239 ~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 239 DEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 211 2367899999999999999999987532100 00012346789999999999
Q ss_pred hhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcE
Q 041899 266 AKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGK 342 (650)
Q Consensus 266 ~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~ 342 (650)
..+++.|++|+.++||||+++|.||||++|++||+. ..|.|.++|+||+|||||...|.
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~------------------gsP~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQV------------------ATPLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEe------------------CCCCCHHHHHHHhCCCCCCCCCc
Confidence 999999999999999999999999999999999994 34899999999999999975443
No 50
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=277.68 Aligned_cols=328 Identities=20% Similarity=0.230 Sum_probs=231.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhccc------CCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGY------TKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~------~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
.....|++.++.+.++++++|.++|||||| +++|..-.-... ..+.-.+|++|||+||.|+++.+.+....-
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 467889999999999999999999999999 677765322211 224489999999999999999988766543
Q ss_pred cCcEeeeeecccccCC------CCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHH---HHHHHH--
Q 041899 82 LGHEVGYSIRFEDCTS------EKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILL---GIFKDL-- 148 (650)
Q Consensus 82 ~g~~vg~~~~~~~~~~------~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll---~~l~~~-- 148 (650)
.-..-|+-+.++.+.+ ...+|++.|||.|+..+.+.. .++++.+||+||++ |-++..|-. .+++.+
T Consensus 239 hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~~ 317 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVHS 317 (708)
T ss_pred eEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHhh
Confidence 3344566777776655 456899999999999998766 47789999999999 433332211 122222
Q ss_pred -Hh-cCC------CceEEEEccCC--ChHHHHhhhCCCCcccc-------------------CC---c-------cccee
Q 041899 149 -VR-LRS------DLKLLISSATL--DAEKFSAYFNFAPILRV-------------------PG---R-------RYPVE 189 (650)
Q Consensus 149 -~~-~~~------~~kii~~SAT~--~~~~~~~~~~~~~~~~~-------------------~~---~-------~~~v~ 189 (650)
.. .+. ..+-+++|||+ .+..+++.--..|+..- ++ . +-...
T Consensus 318 ~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~ 397 (708)
T KOG0348|consen 318 IQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLL 397 (708)
T ss_pred ccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhh
Confidence 11 222 35678999999 45566664322222111 01 0 00112
Q ss_pred EEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHh----hcC---------CCCceEEEee
Q 041899 190 IHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRK----LGT---------KIGELIVCPV 256 (650)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~----~~~---------~~~~~~v~~l 256 (650)
.+|...|..-.+-.....+.+.....+..+++||+.+.+.++.=+..+.+.+.. ... -.-+..+.-+
T Consensus 398 qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rL 477 (708)
T KOG0348|consen 398 QRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRL 477 (708)
T ss_pred hceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEe
Confidence 334334433333344445555555566678999999999999988888775432 000 0115678899
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccC
Q 041899 257 YANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSG 336 (650)
Q Consensus 257 h~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaG 336 (650)
||+|++++|..+|+.|.....-|++||+++++|+|+|+|+.||. ++.|.+.++|+||+||+.
T Consensus 478 HGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ------------------Yd~P~s~adylHRvGRTA 539 (708)
T KOG0348|consen 478 HGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ------------------YDPPFSTADYLHRVGRTA 539 (708)
T ss_pred cCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE------------------eCCCCCHHHHHHHhhhhh
Confidence 99999999999999999988999999999999999999999998 556999999999999999
Q ss_pred CCC-CcEEEEee--Ccccccccc
Q 041899 337 RTG-PGKCFRLY--TINSYQEDM 356 (650)
Q Consensus 337 R~~-~G~~~~l~--~~~~~~~~~ 356 (650)
|.| .|....+. ++.+|.+.+
T Consensus 540 RaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 540 RAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred hccCCCceEEEecccHHHHHHHH
Confidence 998 46655444 444554433
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2e-31 Score=302.10 Aligned_cols=300 Identities=18% Similarity=0.196 Sum_probs=208.9
Q ss_pred CCCchHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 8 TLPIYHYREQVLRAVQEN------QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
...+++.|+++++.+.++ .+.+++||||||||..+...++.. ..++.++++++||++||.|.++.+.+.+. .
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~-~~~g~q~lilaPT~~LA~Q~~~~l~~l~~-~ 336 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAA-IEAGYQAALMAPTEILAEQHYENLKKLLE-P 336 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEeccHHHHHHHHHHHHHHHh-h
Confidence 345899999999998765 379999999999996655555543 33466999999999999999999976542 2
Q ss_pred cCcEeeeeecccc----------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc
Q 041899 82 LGHEVGYSIRFED----------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL 151 (650)
Q Consensus 82 ~g~~vg~~~~~~~----------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 151 (650)
.|..++....... ......+|+++|++.+.. ...+.++++|||||+|..+.. ....+...
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~------qr~~l~~~ 406 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE------QRLALREK 406 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH------HHHHHHhc
Confidence 3344443322221 123468999999987632 335789999999999943222 11222233
Q ss_pred CCCceEEEEccCCChHHHHh-hhCCCCccc---cCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 152 RSDLKLLISSATLDAEKFSA-YFNFAPILR---VPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 152 ~~~~kii~~SAT~~~~~~~~-~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
....++++||||+.+..+.- .++...+.. .+....|+...+...... +..+..+.... ..+++++||||..
T Consensus 407 ~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~---~~~~~~i~~~~--~~g~q~~v~~~~i 481 (681)
T PRK10917 407 GENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRR---DEVYERIREEI--AKGRQAYVVCPLI 481 (681)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccH---HHHHHHHHHHH--HcCCcEEEEEccc
Confidence 44678999999996665443 233322222 222233566555543322 22222232222 3467999999965
Q ss_pred HH--------HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEE
Q 041899 228 EE--------IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVV 299 (650)
Q Consensus 228 ~~--------i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VI 299 (650)
++ ++.+++.|.+. .++..+..+||+|+.++|+++++.|++|+.+|||||+++++|||+|++++||
T Consensus 482 e~s~~l~~~~~~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI 554 (681)
T PRK10917 482 EESEKLDLQSAEETYEELQEA-------FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV 554 (681)
T ss_pred ccccchhHHHHHHHHHHHHHH-------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE
Confidence 43 44555555543 2347799999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeC
Q 041899 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYT 348 (650)
Q Consensus 300 d~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 348 (650)
.. |+. ..+.+++.||+||+||.| +|.||.+++
T Consensus 555 i~--------~~~---------r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 555 IE--------NAE---------RFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred Ee--------CCC---------CCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 73 221 134678999999999998 799999985
No 52
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.5e-31 Score=298.12 Aligned_cols=343 Identities=15% Similarity=0.164 Sum_probs=209.5
Q ss_pred CCchHHHHHHHHHHHcCC-eEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHHHHHHHHHHHHHHhCCcc---
Q 041899 9 LPIYHYREQVLRAVQENQ-VVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRVAAISVAARVSREMGVKL--- 82 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~~~~--- 82 (650)
...+++|.++++.+.+++ ++++.+|||||||..+..+++...... ..++++++|||+|+.|+++.+.+ ++...
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~-~~k~l~~~ 92 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK-IGERLPDV 92 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH-HHHHhccc
Confidence 458999999999999987 678889999999965444443221111 22677788999999999988755 33221
Q ss_pred --------------------CcEeeeeeccccc------CCCCceEEEEChHHHHHHHhcCC-------------CCCCC
Q 041899 83 --------------------GHEVGYSIRFEDC------TSEKTVLKYMTDGMVLREMLSDP-------------KLESY 123 (650)
Q Consensus 83 --------------------g~~vg~~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~-------------~l~~~ 123 (650)
...+.....+... ......|+++|.+++.+..+..+ .+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v 172 (844)
T TIGR02621 93 PEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQD 172 (844)
T ss_pred chhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccc
Confidence 1122211212111 22456899999877765544210 26889
Q ss_pred ceEEecccccCCccccHHHHHHHHHHhcCC---CceEEEEccCCCh--HHHHhhhCCCCc-cccCCcccc--eeEEEecC
Q 041899 124 SVLMVDEAHERTLSTDILLGIFKDLVRLRS---DLKLLISSATLDA--EKFSAYFNFAPI-LRVPGRRYP--VEIHYTKA 195 (650)
Q Consensus 124 ~~iIiDE~Her~~~~d~ll~~l~~~~~~~~---~~kii~~SAT~~~--~~~~~~~~~~~~-~~~~~~~~~--v~~~~~~~ 195 (650)
++||+||||......+.+..+++... ..+ +.|+++||||++. ..+...+...+. +.+...... -..+|...
T Consensus 173 ~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~v~v 251 (844)
T TIGR02621 173 ALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKLVPP 251 (844)
T ss_pred eEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEEEec
Confidence 99999999943333333333333221 122 3699999999953 344444432222 222211111 11223333
Q ss_pred CCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHh-----hhcC
Q 041899 196 PESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQA-----KIFV 270 (650)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~-----~i~~ 270 (650)
+........+..+.... ...++++||||||+++++.+++.|.+. ++ ..+||+|++.+|. ++++
T Consensus 252 ~~e~Kl~~lv~~L~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~---------g~--~lLHG~m~q~dR~~~~~~~il~ 319 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLM-KDSGGAILVFCRTVKHVRKVFAKLPKE---------KF--ELLTGTLRGAERDDLVKKEIFN 319 (844)
T ss_pred ChHHHHHHHHHHHHHHH-hhCCCcEEEEECCHHHHHHHHHHHHhc---------CC--eEeeCCCCHHHHhhHHHHHHHH
Confidence 32222323333333333 234689999999999999999999764 33 7899999999999 7788
Q ss_pred CCCC----CC-------cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC
Q 041899 271 PTPD----GA-------RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG 339 (650)
Q Consensus 271 ~~~~----g~-------~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~ 339 (650)
.|++ |. .+|||||+++|+||||+. ++||+. ..+.++|+||+||+||.|
T Consensus 320 ~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d--------------------~aP~esyIQRiGRtgR~G 378 (844)
T TIGR02621 320 RFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCD--------------------LAPFESMQQRFGRVNRFG 378 (844)
T ss_pred HHhccccccccccccccceEEeccchhhhcccCCc-ceEEEC--------------------CCCHHHHHHHhcccCCCC
Confidence 8876 43 689999999999999997 666641 134689999999999998
Q ss_pred C--cEEEEeeCccc-cccccCCCCCccccccChhHHHHHHHhcCCCCCCCC
Q 041899 340 P--GKCFRLYTINS-YQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNF 387 (650)
Q Consensus 340 ~--G~~~~l~~~~~-~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~ 387 (650)
. |..+.+++.+. .......| -|++++..+..+.+.....|..+...|
T Consensus 379 ~~~~~~i~vv~~~~~~~~~~~vY-~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 379 ELQACQIAVVHLDLGKDQDFDVY-GKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred CCCCceEEEEeeccCCCcccCCC-CHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4 33234433211 10111112 356776666555555554443333333
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-31 Score=301.74 Aligned_cols=301 Identities=17% Similarity=0.197 Sum_probs=204.9
Q ss_pred CchHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 10 PIYHYREQVLRAVQEN------QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.+++.|+++++.+.++ .+.+++||||||||..+...++.. ..++.++++++|+++||.|+++.+.+.++ ..|
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~-~~~g~qvlilaPT~~LA~Q~~~~~~~l~~-~~g 312 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAA-IEAGYQVALMAPTEILAEQHYNSLRNLLA-PLG 312 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHH-HHcCCcEEEECCHHHHHHHHHHHHHHHhc-ccC
Confidence 3889999999998765 258999999999997665555443 33466899999999999999999977553 223
Q ss_pred cEeeeeeccc----------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCC
Q 041899 84 HEVGYSIRFE----------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 84 ~~vg~~~~~~----------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 153 (650)
..++...... .......+|+++|++.+.. ...+.++++|||||+|..+... ...+........
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q---r~~l~~~~~~~~ 385 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ---RKKLREKGQGGF 385 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHH---HHHHHHhcccCC
Confidence 3333221111 1123456899999987643 3457899999999999533221 111111111112
Q ss_pred CceEEEEccCCChHHHHhh-hCCCC---ccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH-
Q 041899 154 DLKLLISSATLDAEKFSAY-FNFAP---ILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE- 228 (650)
Q Consensus 154 ~~kii~~SAT~~~~~~~~~-~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~- 228 (650)
+.++++||||+.+..+... ++... +...+....|+...+..... .......+.+.. ..+++++||||..+
T Consensus 386 ~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~---~~~~~~~i~~~l--~~g~q~~v~~~~i~~ 460 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDE---KDIVYEFIEEEI--AKGRQAYVVYPLIEE 460 (630)
T ss_pred CCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcch---HHHHHHHHHHHH--HhCCcEEEEEccccc
Confidence 6789999999866554432 22211 11223223466665544322 122222222211 23678999999764
Q ss_pred -------HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeC
Q 041899 229 -------EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDS 301 (650)
Q Consensus 229 -------~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~ 301 (650)
.++.+++.|.+. .++..+..+||+|++++|.++++.|++|+.+|||||+++++|||+|++++||..
T Consensus 461 s~~~~~~~a~~~~~~L~~~-------~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~ 533 (630)
T TIGR00643 461 SEKLDLKAAEALYERLKKA-------FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIE 533 (630)
T ss_pred cccchHHHHHHHHHHHHhh-------CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEe
Confidence 344555555543 246789999999999999999999999999999999999999999999999973
Q ss_pred CcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeC
Q 041899 302 GYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYT 348 (650)
Q Consensus 302 G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 348 (650)
|+. ..+.+++.||+||+||.| +|.|+.++.
T Consensus 534 --------~~~---------r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 534 --------DAE---------RFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred --------CCC---------cCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 221 235788999999999988 799999983
No 54
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.4e-32 Score=288.01 Aligned_cols=304 Identities=18% Similarity=0.194 Sum_probs=216.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeee
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYS 89 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~ 89 (650)
.+-|+++++++.+++++++..|||+||| +|+|..+. .|-.+|+.|..+|...+.+.+.. .|..........
T Consensus 19 R~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~-~Gi~A~~lnS~l 91 (590)
T COG0514 19 RPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEA-AGIRAAYLNSTL 91 (590)
T ss_pred CCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHH-cCceeehhhccc
Confidence 4568999999999999999999999999 89998876 45789999999999998877743 443321111100
Q ss_pred eccc------ccCCCCceEEEEChHHHHHHHhcC-CCCCCCceEEecccccCCccc-cH--HHHHHHHHHhcCCCceEEE
Q 041899 90 IRFE------DCTSEKTVLKYMTDGMVLREMLSD-PKLESYSVLMVDEAHERTLST-DI--LLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 90 ~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~~-d~--ll~~l~~~~~~~~~~kii~ 159 (650)
...+ ......-+++|.+|+.|...-..+ -.-..+++++|||||.-+-.. || -...+..+....++++++.
T Consensus 92 ~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~A 171 (590)
T COG0514 92 SREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLA 171 (590)
T ss_pred CHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEE
Confidence 1111 112234689999999874321111 124568999999999544332 33 3334555556677999999
Q ss_pred EccCCChH---HHHhhhCC-CCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 160 SSATLDAE---KFSAYFNF-APILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 160 ~SAT~~~~---~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
+|||.+.. ++.+.++- .+.+.+.+- ....++|.-.+..+...... .+.. ......++.||||.|+..++.+++
T Consensus 172 lTATA~~~v~~DI~~~L~l~~~~~~~~sf-dRpNi~~~v~~~~~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 172 LTATATPRVRDDIREQLGLQDANIFRGSF-DRPNLALKVVEKGEPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred EeCCCChHHHHHHHHHhcCCCcceEEecC-CCchhhhhhhhcccHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHH
Confidence 99999765 44444432 221111110 01112222211111122111 1111 223446778999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.|.+. ++.+..|||||+.++|..+.+.|.+++.+|+|||++.++|||.|||++||+
T Consensus 249 ~L~~~---------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------------- 304 (590)
T COG0514 249 WLRKN---------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------------- 304 (590)
T ss_pred HHHHC---------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE---------------
Confidence 99875 789999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.|..+|.|-.|||||.| +..|+.||++.+.
T Consensus 305 ---~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 305 ---YDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred ---ecCCCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 556999999999999999999 8999999998775
No 55
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=5.2e-32 Score=279.78 Aligned_cols=311 Identities=19% Similarity=0.180 Sum_probs=225.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHH--hccc------CC--CCeEEEecchHHHHHHHHHHHHHHh
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLH--EAGY------TK--HGKVGCTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~--~~~~------~~--~~~ilv~~P~r~la~q~~~~v~~~~ 78 (650)
..++|+-.++.+.++++++++|+|||||| +++|..-. +... .. .+.++++.|||+||.|++++..+..
T Consensus 97 ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~ 176 (482)
T KOG0335|consen 97 PTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFS 176 (482)
T ss_pred CCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhc
Confidence 46788889999999999999999999999 77776633 2211 11 2489999999999999999997754
Q ss_pred CCccC-cEeeeeeccc----ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCcc-ccHHHHHHHHHHhc
Q 041899 79 GVKLG-HEVGYSIRFE----DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLS-TDILLGIFKDLVRL 151 (650)
Q Consensus 79 ~~~~g-~~vg~~~~~~----~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~-~d~ll~~l~~~~~~ 151 (650)
+...- ..++|.-+.. .......+|+++|+|.|...+.... .|.++.++|+||++ |.++ ..|.-.+=+.+...
T Consensus 177 ~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~ 255 (482)
T KOG0335|consen 177 YLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQL 255 (482)
T ss_pred ccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhccc
Confidence 43221 1222322111 1233578999999999988776554 68999999999999 7766 55544433333222
Q ss_pred ----CCCceEEEEccCCC--hHHHHhhhCCC-Cc----cccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCC--
Q 041899 152 ----RSDLKLLISSATLD--AEKFSAYFNFA-PI----LRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASG-- 218 (650)
Q Consensus 152 ----~~~~kii~~SAT~~--~~~~~~~~~~~-~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 218 (650)
....+-+++|||.+ .+.+..+|-.. .+ ..+.+..-.+........+.+.....+..+.........+
T Consensus 256 ~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~ 335 (482)
T KOG0335|consen 256 GMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEP 335 (482)
T ss_pred CCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCc
Confidence 23678999999983 44555555322 11 1122222233333333333333333333322222111233
Q ss_pred ---CEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe
Q 041899 219 ---DILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI 295 (650)
Q Consensus 219 ---~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v 295 (650)
.++|||.+++.+..++..|... ++....+||.-++.+|.+.++.|++|+..++|||+++++|+|||+|
T Consensus 336 ~~e~tlvFvEt~~~~d~l~~~l~~~---------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V 406 (482)
T KOG0335|consen 336 KWEKTLVFVETKRGADELAAFLSSN---------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNV 406 (482)
T ss_pred ccceEEEEeeccchhhHHHHHHhcC---------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCC
Confidence 7999999999999999999875 7889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCc
Q 041899 296 KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTI 349 (650)
Q Consensus 296 ~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~ 349 (650)
++||+ ++.|....+|+||+||+||.| .|....|+..
T Consensus 407 ~hVIn------------------yDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 407 KHVIN------------------YDMPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred ceeEE------------------eecCcchhhHHHhccccccCCCCceeEEEecc
Confidence 99999 778999999999999999999 5889998873
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.98 E-value=2.2e-31 Score=311.76 Aligned_cols=300 Identities=19% Similarity=0.191 Sum_probs=210.0
Q ss_pred CCchHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 9 LPIYHYREQVLRAVQEN------QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
....+.|.++++.+.++ .+++++||||+|||.++..+++.. ..++.+++|++||++||.|+++.+.+.++. .
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~-~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~ 676 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VENHKQVAVLVPTTLLAQQHYDNFRDRFAN-W 676 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHhhcc-C
Confidence 44889999999998876 789999999999996554333332 234679999999999999999999775542 2
Q ss_pred CcEeeeeecccc----------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 83 GHEVGYSIRFED----------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 83 g~~vg~~~~~~~----------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
+..++...++.+ ......+|+++|++.+. .+..+.+++++||||+|..+.. ....+....
T Consensus 677 ~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~~v~~~~L~lLVIDEahrfG~~------~~e~lk~l~ 746 (1147)
T PRK10689 677 PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----SDVKWKDLGLLIVDEEHRFGVR------HKERIKAMR 746 (1147)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----CCCCHhhCCEEEEechhhcchh------HHHHHHhcC
Confidence 222322222111 01235689999997542 3345789999999999954321 222333456
Q ss_pred CCceEEEEccCCChHHHHh---hhCCCCccccCC-cccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 153 SDLKLLISSATLDAEKFSA---YFNFAPILRVPG-RRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 153 ~~~kii~~SAT~~~~~~~~---~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
++.++++||||+.+..+.. .+.+..++..+. ...+++.++.......... .++... ..+|+++||||+.+
T Consensus 747 ~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~----~il~el--~r~gqv~vf~n~i~ 820 (1147)
T PRK10689 747 ADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE----AILREI--LRGGQVYYLYNDVE 820 (1147)
T ss_pred CCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHH----HHHHHH--hcCCeEEEEECCHH
Confidence 7899999999986654432 222232333322 2234554443321111111 111111 23689999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccccee
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKW 308 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~ 308 (650)
.++.+++.|.+.. ++..+..+||+|+.++|.+++..|++|+.+|||||+++++|+|+|++++||..
T Consensus 821 ~ie~la~~L~~~~-------p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~------- 886 (1147)
T PRK10689 821 NIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE------- 886 (1147)
T ss_pred HHHHHHHHHHHhC-------CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe-------
Confidence 9999999998763 35678889999999999999999999999999999999999999999999841
Q ss_pred ccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 309 YNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 309 ~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
++ ...+.++|.||+||+||.+ .|.||.+++..
T Consensus 887 -~a---------d~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 887 -RA---------DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred -cC---------CCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 11 1234578999999999998 79999888653
No 57
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=3.2e-32 Score=261.51 Aligned_cols=308 Identities=19% Similarity=0.251 Sum_probs=228.4
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeee
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYS 89 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~ 89 (650)
.|.|++.++....+++++.-|..|+||| +.+|..-.-......-..++++|+|+||.|.. ++..+++...|..+-..
T Consensus 109 SPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtS-qvc~~lskh~~i~vmvt 187 (459)
T KOG0326|consen 109 SPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTS-QVCKELSKHLGIKVMVT 187 (459)
T ss_pred CCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHH-HHHHHHhcccCeEEEEe
Confidence 4678999999999999999999999999 66665432221122237899999999998877 44455665555433222
Q ss_pred -----ecccc-cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 90 -----IRFED-CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 90 -----~~~~~-~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
.+.+- ......+++++|||.++..+...- .+++...+|+|||+ ..+..||.-.+-+.+.-..++.++++.||
T Consensus 188 tGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQillySA 266 (459)
T KOG0326|consen 188 TGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQILLYSA 266 (459)
T ss_pred cCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceeeEEec
Confidence 22221 233567899999999999775544 68999999999999 55666666555555555777889999999
Q ss_pred CCC--hHHHHh-hhCCCCccccCCcc--cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 041899 163 TLD--AEKFSA-YFNFAPILRVPGRR--YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEIL 237 (650)
Q Consensus 163 T~~--~~~~~~-~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L 237 (650)
|.+ ...|.+ ++.++-.+..-... ..|+.+|.-..+...+. .+..++ ....-.+.+|||++.+.++-+|+.+
T Consensus 267 TFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvh-CLntLf---skLqINQsIIFCNS~~rVELLAkKI 342 (459)
T KOG0326|consen 267 TFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVH-CLNTLF---SKLQINQSIIFCNSTNRVELLAKKI 342 (459)
T ss_pred ccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhh-hHHHHH---HHhcccceEEEeccchHhHHHHHHH
Confidence 983 444443 44433333322211 23555665444333322 222222 2223467899999999999999999
Q ss_pred HHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccc
Q 041899 238 KERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMES 317 (650)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~ 317 (650)
.+. ++.+..+|+.|.++.|.++|..|++|..+.+|||+.+.+|||+++|++||+
T Consensus 343 Tel---------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----------------- 396 (459)
T KOG0326|consen 343 TEL---------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----------------- 396 (459)
T ss_pred Hhc---------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe-----------------
Confidence 876 788889999999999999999999999999999999999999999999999
Q ss_pred ceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 318 LLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 318 l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.+..+|.||+||+||.| .|..+.|.+-++-
T Consensus 397 -FDfpk~aEtYLHRIGRsGRFGhlGlAInLityedr 431 (459)
T KOG0326|consen 397 -FDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDR 431 (459)
T ss_pred -cCCCCCHHHHHHHccCCccCCCcceEEEEEehhhh
Confidence 666999999999999999999 7999999876543
No 58
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=4.5e-32 Score=268.12 Aligned_cols=312 Identities=19% Similarity=0.258 Sum_probs=236.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhc------ccCCCCeEEEecchHHHHHHHHHHHHHHh--CC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEA------GYTKHGKVGCTQPRRVAAISVAARVSREM--GV 80 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~------~~~~~~~ilv~~P~r~la~q~~~~v~~~~--~~ 80 (650)
-.+.|.++.+.++++.+++.+|-||+||| ++.|-++.-. ....+..++++.|||+|+.|+.-.+.++. |.
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ 322 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGL 322 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCc
Confidence 35668889999999999999999999999 6666554322 11224489999999999999987776643 21
Q ss_pred ccCcEeeeeeccc--ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 81 KLGHEVGYSIRFE--DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 81 ~~g~~vg~~~~~~--~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
..-...|-.-|.+ ........|+++|||.|....+.+- .+..+.++|+|||+ |.++..|-..+-+.++..+||.+.
T Consensus 323 ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqt 401 (629)
T KOG0336|consen 323 KSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQT 401 (629)
T ss_pred ceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCccee
Confidence 1111111111222 1233567899999999988776655 79999999999999 999999999998988999999999
Q ss_pred EEEccCCC--hHHHHhhhCCCCccccCCcc-----cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 041899 158 LISSATLD--AEKFSAYFNFAPILRVPGRR-----YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEI 230 (650)
Q Consensus 158 i~~SAT~~--~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i 230 (650)
++.|||.+ +..++.-+...|++..-|.. ..|+..+....+.+... .+.....- ..+..++||||..+..+
T Consensus 402 vmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~-~~~~f~~~--ms~ndKvIiFv~~K~~A 478 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLE-IVQFFVAN--MSSNDKVIIFVSRKVMA 478 (629)
T ss_pred eeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHH-HHHHHHHh--cCCCceEEEEEechhhh
Confidence 99999994 44555433345555554432 34555554444444432 22222222 23467999999998887
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceecc
Q 041899 231 ETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYN 310 (650)
Q Consensus 231 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d 310 (650)
..+...+.- .++....+||+-.+.+|+..++.|++|+.+|||||+++.+|+|+|+|++|++
T Consensus 479 D~LSSd~~l---------~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N---------- 539 (629)
T KOG0336|consen 479 DHLSSDFCL---------KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN---------- 539 (629)
T ss_pred hhccchhhh---------cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----------
Confidence 777666543 3788889999999999999999999999999999999999999999999999
Q ss_pred CCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccccc
Q 041899 311 PKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSYQ 353 (650)
Q Consensus 311 ~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 353 (650)
++.|.+..+|+||.||+||.| .|..+.+++..++.
T Consensus 540 --------yDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 540 --------YDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred --------cCCCccHHHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 667999999999999999999 69999999887763
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.98 E-value=4.9e-31 Score=279.98 Aligned_cols=292 Identities=20% Similarity=0.198 Sum_probs=192.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeee------cccc-----
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSI------RFED----- 94 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~------~~~~----- 94 (650)
+++|+||||||||.++.++++.... ...++++|++|+++|+.|+++++...++..+|...|... ..+.
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4899999999999888877775422 234599999999999999999999888765553333111 0000
Q ss_pred ---------cCCCCceEEEEChHHHHHHHhcCC-C------CCCCceEEecccccCCcc-ccHHHHHHHHHHhcCCCceE
Q 041899 95 ---------CTSEKTVLKYMTDGMVLREMLSDP-K------LESYSVLMVDEAHERTLS-TDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 95 ---------~~~~~~~i~~~T~~~Ll~~l~~~~-~------l~~~~~iIiDE~Her~~~-~d~ll~~l~~~~~~~~~~ki 157 (650)
.......|+++|++.++..+.... . .-..++|||||+|..... .+++..+++.+. ..+.++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~--~~~~~~ 158 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK--DNDVPI 158 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--HcCCCE
Confidence 001235799999999988776521 0 112389999999953322 233444444433 357899
Q ss_pred EEEccCCChHHHHhhhCCCCccc----cCCccc-ce-eEEEe-cCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 041899 158 LISSATLDAEKFSAYFNFAPILR----VPGRRY-PV-EIHYT-KAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEI 230 (650)
Q Consensus 158 i~~SAT~~~~~~~~~~~~~~~~~----~~~~~~-~v-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i 230 (650)
++||||++ +.+.+++....... .+.... .. ...+. ...........+..++... ..++++||||++++++
T Consensus 159 i~~SATlp-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 159 LLMSATLP-KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRA 235 (358)
T ss_pred EEEecCch-HHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHH
Confidence 99999986 45666654321110 110000 00 01110 0111111111222222222 3468999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhh----hcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 231 ETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAK----IFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 231 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~----i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
+.+++.|.+.. .+..+..+||++++.+|.+ +++.|++|..+|||||+++++|+|+| +++||+.
T Consensus 236 ~~~~~~L~~~~-------~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~----- 302 (358)
T TIGR01587 236 QEFYQQLKENA-------PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITE----- 302 (358)
T ss_pred HHHHHHHHhhc-------CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEc-----
Confidence 99999998752 1346889999999999976 47889999999999999999999997 6677651
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCCC-----cEEEEeeCccc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP-----GKCFRLYTINS 351 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~-----G~~~~l~~~~~ 351 (650)
+.+..+|+||+||+||.|. |.+|.++...+
T Consensus 303 ---------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 303 ---------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred ---------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 3557899999999999872 36777765443
No 60
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.7e-31 Score=256.86 Aligned_cols=314 Identities=20% Similarity=0.219 Sum_probs=239.0
Q ss_pred hHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 12 YHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 12 ~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
...|+.+++.+.. .+++|.++-.|+|||+.+.+.++...- ......+|+.|+|+||.|.-+-+ .++|.-.+....
T Consensus 114 skIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~ 192 (477)
T KOG0332|consen 114 SKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTAS 192 (477)
T ss_pred chHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEE
Confidence 4678888888765 478999999999999877777765421 12347899999999999999655 779987778888
Q ss_pred eeecccccCC---CCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCcccc-HHHHHHHHHHhcCCCceEEEEc
Q 041899 88 YSIRFEDCTS---EKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTD-ILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 88 ~~~~~~~~~~---~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d-~ll~~l~~~~~~~~~~kii~~S 161 (650)
|.++...... -..+|++.|||.++.++..-. .++.+.++|+|||+ -+++++ +...-++......++.+++++|
T Consensus 193 yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFS 271 (477)
T KOG0332|consen 193 YAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFS 271 (477)
T ss_pred EEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchh-hhhhcccccccchhhhhhcCCcceEEeee
Confidence 9988773332 356899999999998877622 67889999999999 333332 2222233333355689999999
Q ss_pred cCCC--hHHHHhhh-CCCCccccCCc---ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 162 ATLD--AEKFSAYF-NFAPILRVPGR---RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 162 AT~~--~~~~~~~~-~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
||.+ ...|+.-+ .++..+.+..+ .+++..+|..++..+-.-. .+.++.....-|+.+|||.++..+..++.
T Consensus 272 ATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~---~l~~lyg~~tigqsiIFc~tk~ta~~l~~ 348 (477)
T KOG0332|consen 272 ATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQ---ALVNLYGLLTIGQSIIFCHTKATAMWLYE 348 (477)
T ss_pred chhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHH---HHHHHHhhhhhhheEEEEeehhhHHHHHH
Confidence 9983 44555433 44545444433 3578888888776544333 33344444456899999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.+.+. +..+..+||.|..++|..+.+.|+.|..||||+||+.++|||++.|++||++ |-...
T Consensus 349 ~m~~~---------Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNy--------dlP~~- 410 (477)
T KOG0332|consen 349 EMRAE---------GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNY--------DLPVK- 410 (477)
T ss_pred HHHhc---------CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEec--------CCccc-
Confidence 99876 7889999999999999999999999999999999999999999999999994 43222
Q ss_pred ccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
+....+...|+||+||+||.| .|..+.+...+.
T Consensus 411 ---~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 411 ---YTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred ---cCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 223477899999999999999 699999876543
No 61
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.97 E-value=4e-30 Score=278.28 Aligned_cols=318 Identities=21% Similarity=0.306 Sum_probs=214.7
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhc-ccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEA-GYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.++|++.||.++.+..+ ++++||++|||+|||+++...++++ .+.++++|++++|++-|+.|+...+ ..++.+.. .
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~-~~~~~~~~-~ 135 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACF-SIYLIPYS-V 135 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHH-hhccCccc-c
Confidence 57899999999999888 9999999999999998888777765 3445679999999999999988555 33443311 1
Q ss_pred eeeeecccc------cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCce
Q 041899 86 VGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLK 156 (650)
Q Consensus 86 vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~k 156 (650)
.| ...... ..-...++.|+||+++...|.+.. .|+.++++|||||| |.......-.+.+.++... ...|
T Consensus 136 T~-~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~~~q 213 (746)
T KOG0354|consen 136 TG-QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQGNQ 213 (746)
T ss_pred ee-eccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhcccc
Confidence 11 111111 112367899999999988886533 47889999999999 5555545555555555433 3349
Q ss_pred EEEEccCC--ChHHHHhhhCCCCc-ccc--------------CCcccceeE-----------------------------
Q 041899 157 LLISSATL--DAEKFSAYFNFAPI-LRV--------------PGRRYPVEI----------------------------- 190 (650)
Q Consensus 157 ii~~SAT~--~~~~~~~~~~~~~~-~~~--------------~~~~~~v~~----------------------------- 190 (650)
++++|||+ +.+...++..+--+ +.+ .-...|+++
T Consensus 214 ILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~ 293 (746)
T KOG0354|consen 214 ILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIE 293 (746)
T ss_pred EEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccc
Confidence 99999999 56666665531000 000 000001100
Q ss_pred ------EEec------------CCCCc-----------------------------------------------------
Q 041899 191 ------HYTK------------APESN----------------------------------------------------- 199 (650)
Q Consensus 191 ------~~~~------------~~~~~----------------------------------------------------- 199 (650)
.|.. .+..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~ 373 (746)
T KOG0354|consen 294 ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLI 373 (746)
T ss_pred cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhh
Confidence 0000 00000
Q ss_pred ----------------------hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeec
Q 041899 200 ----------------------YIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVY 257 (650)
Q Consensus 200 ----------------------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh 257 (650)
.++.....+.+.....+..+++||+.+++.+..+...|.+.. ..+.. +.+-+..-+
T Consensus 374 ~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~-~~~ir-~~~fiGq~~ 451 (746)
T KOG0354|consen 374 RNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH-ELGIK-AEIFIGQGK 451 (746)
T ss_pred HHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh-hcccc-cceeeeccc
Confidence 000011111112223345689999999999999999998622 21111 122222222
Q ss_pred ----CCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhcc
Q 041899 258 ----ANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAG 333 (650)
Q Consensus 258 ----~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~G 333 (650)
.+|++.+|+++++.|++|+.+|||||+++|.|+||+.++.||-++ ...+....+||+|
T Consensus 452 s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd------------------~~snpIrmIQrrG 513 (746)
T KOG0354|consen 452 STQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYD------------------YSSNPIRMVQRRG 513 (746)
T ss_pred cccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEec------------------CCccHHHHHHHhc
Confidence 489999999999999999999999999999999999999999833 3567889999999
Q ss_pred ccCCCCCcEEEEeeCcc
Q 041899 334 RSGRTGPGKCFRLYTIN 350 (650)
Q Consensus 334 RaGR~~~G~~~~l~~~~ 350 (650)
| ||...|.|+.|++..
T Consensus 514 R-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 514 R-GRARNSKCVLLTTGS 529 (746)
T ss_pred c-ccccCCeEEEEEcch
Confidence 9 999999999999843
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=1.1e-29 Score=267.09 Aligned_cols=285 Identities=15% Similarity=0.175 Sum_probs=185.3
Q ss_pred HHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhC-------CccCc
Q 041899 14 YREQVLRAVQENQ--VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMG-------VKLGH 84 (650)
Q Consensus 14 ~q~~~l~~l~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~-------~~~g~ 84 (650)
+|.++++++.+++ +++++||||||||......++. .+.+++++.|+++|+.++++++.+.+. ..+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH----GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLH 76 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEE
Confidence 5899999998776 4899999999999666555443 245789999999999999999887652 11212
Q ss_pred Eeeeeec----cc----------c--------cCCCCceEEEEChHHHHHHHh---cCC------CCCCCceEEeccccc
Q 041899 85 EVGYSIR----FE----------D--------CTSEKTVLKYMTDGMVLREML---SDP------KLESYSVLMVDEAHE 133 (650)
Q Consensus 85 ~vg~~~~----~~----------~--------~~~~~~~i~~~T~~~Ll~~l~---~~~------~l~~~~~iIiDE~He 133 (650)
..|.... .. . .......|+++||+++...+. .++ .+.++++|||||+|.
T Consensus 77 ~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~ 156 (357)
T TIGR03158 77 VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHL 156 (357)
T ss_pred ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccc
Confidence 2221000 00 0 001245667777777754332 222 268899999999997
Q ss_pred CCcccc-HHH---HHHHHHHhcCCCceEEEEccCCChHHH---Hhh-hCCCCccccCCc--cc-----------------
Q 041899 134 RTLSTD-ILL---GIFKDLVRLRSDLKLLISSATLDAEKF---SAY-FNFAPILRVPGR--RY----------------- 186 (650)
Q Consensus 134 r~~~~d-~ll---~~l~~~~~~~~~~kii~~SAT~~~~~~---~~~-~~~~~~~~~~~~--~~----------------- 186 (650)
.+.... .++ .....+.......++++||||++.... .+. +.+.++..++|. .+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 236 (357)
T TIGR03158 157 YDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRP 236 (357)
T ss_pred cCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccce
Confidence 664332 222 222222222335799999999976532 232 013455555555 11
Q ss_pred ---ceeEEEecCCCC--chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCC
Q 041899 187 ---PVEIHYTKAPES--NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLP 261 (650)
Q Consensus 187 ---~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~ 261 (650)
++++.+...... +.+......+.+.....+++++||||++...++.++..|++.. .+..+..+||.++
T Consensus 237 ~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-------~~~~~~~l~g~~~ 309 (357)
T TIGR03158 237 VLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG-------LGDDIGRITGFAP 309 (357)
T ss_pred eccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------CCceEEeeecCCC
Confidence 355555442211 1122222333333333456799999999999999999998641 1356778999999
Q ss_pred HHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccC
Q 041899 262 TELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSG 336 (650)
Q Consensus 262 ~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaG 336 (650)
..+|.++. +.+|||||+++++|||+|++.+|++ |.+..+|+||+||+|
T Consensus 310 ~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~vi~~---------------------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERAM------QFDILLGTSTVDVGVDFKRDWLIFS---------------------ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHhc------cCCEEEEecHHhcccCCCCceEEEC---------------------CCCHHHHhhhcccCC
Confidence 99987653 6789999999999999998744332 678999999999997
No 63
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=282.46 Aligned_cols=429 Identities=17% Similarity=0.193 Sum_probs=286.6
Q ss_pred chHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcc---cC-------CCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAG---YT-------KHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~---~~-------~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+...|..+..+ +....++++|||||+|||-.+.+-+++.. .. ...+|+|++|.++|+.++...+++.+
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl- 388 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL- 388 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc-
Confidence 66778887776 45678999999999999966655555431 11 12289999999999999998887744
Q ss_pred CccCcEeeeeeccc---ccCCCCceEEEEChHH---HHHHHhcCCCCCCCceEEecccc----cCCccccHHHHHHH-HH
Q 041899 80 VKLGHEVGYSIRFE---DCTSEKTVLKYMTDGM---VLREMLSDPKLESYSVLMVDEAH----ERTLSTDILLGIFK-DL 148 (650)
Q Consensus 80 ~~~g~~vg~~~~~~---~~~~~~~~i~~~T~~~---Ll~~l~~~~~l~~~~~iIiDE~H----er~~~~d~ll~~l~-~~ 148 (650)
...|..|+-..+.. ......|+++++||+. +.|.--.+...+-++++||||+| +|+...+...+... +.
T Consensus 389 a~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred cccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 34455555322221 1223679999999974 34432222345568999999999 46655444433332 22
Q ss_pred HhcCCCceEEEEccCC-ChHHHHhhhCCCC----ccccCCcccceeEEEecCCCCchHHH---HHHHHH-HHHhcCCCCC
Q 041899 149 VRLRSDLKLLISSATL-DAEKFSAYFNFAP----ILRVPGRRYPVEIHYTKAPESNYIDA---AIVTTL-EIHATQASGD 219 (650)
Q Consensus 149 ~~~~~~~kii~~SAT~-~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~ 219 (650)
.......+++++|||+ |.++++.|+...+ .+-..-|+.|++..|....+.+.... +-..+. ++......++
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~q 548 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQ 548 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCc
Confidence 2345689999999999 8889999887544 23335677789999987766544332 111111 2223334589
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHH----------hh---------------cCC---CCceEEEeecCCCCHHHHhhhcCC
Q 041899 220 ILVFLTGQEEIETVEEILKERIR----------KL---------------GTK---IGELIVCPVYANLPTELQAKIFVP 271 (650)
Q Consensus 220 iLVF~~~~~~i~~~~~~L~~~~~----------~~---------------~~~---~~~~~v~~lh~~l~~~~r~~i~~~ 271 (650)
+|||+.+++++-+.|+.++..+- +. +.+ .-.+.+..+|+||+..+|..+++.
T Consensus 549 VLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdL 628 (1674)
T KOG0951|consen 549 VLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDL 628 (1674)
T ss_pred EEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHH
Confidence 99999999999999999985431 10 001 113567778999999999999999
Q ss_pred CCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-----CcEEEEe
Q 041899 272 TPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-----PGKCFRL 346 (650)
Q Consensus 272 ~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-----~G~~~~l 346 (650)
|++|.++|+++|.++++|+|+|+-+++|- | ..+|||..|.-. +.|+.+.+||.|||||.+ .|+...=
T Consensus 629 f~~g~iqvlvstatlawgvnlpahtViik-g---tqvy~pekg~w~----elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 629 FADGHIQVLVSTATLAWGVNLPAHTVIIK-G---TQVYDPEKGRWT----ELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred HhcCceeEEEeehhhhhhcCCCcceEEec-C---ccccCcccCccc----cCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 99999999999999999999998888885 3 678999988543 789999999999999998 3444444
Q ss_pred eCccccccccCCCC--CccccccChhHHHHHHHhcCCCCCCCC-CCC-----------------------CCC----hHH
Q 041899 347 YTINSYQEDMEDNT--VPEIQRTNLANVILILKNLGIDDLLNF-DFL-----------------------DSP----PQE 396 (650)
Q Consensus 347 ~~~~~~~~~~~~~~--~pei~r~~l~~~~L~l~~~~~~~~~~~-~~~-----------------------~~p----~~~ 396 (650)
+++-.|.-.+-..+ .++-.-..|.+.+-.-+.+|+....+- +|+ |++ -.+
T Consensus 701 ~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~ 780 (1674)
T KOG0951|consen 701 HSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRAD 780 (1674)
T ss_pred chHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhh
Confidence 44433332222222 222222233333333333443222110 111 222 125
Q ss_pred HHHHHHHHHHHcCCCCCC---C--CccHHHHHhccCCCChHHHHHHHhhccccChHH
Q 041899 397 LLRKALELLYALGALNQV---G--ELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNE 448 (650)
Q Consensus 397 ~i~~a~~~L~~~g~l~~~---~--~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~ 448 (650)
.+..|.-.|.+.|.|--+ | +.|.+|+..+.+++........-......|.+.
T Consensus 781 lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i 837 (1674)
T KOG0951|consen 781 LVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEI 837 (1674)
T ss_pred hHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccc
Confidence 567888999999998433 2 589999999999998887777766666555553
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=261.91 Aligned_cols=315 Identities=20% Similarity=0.276 Sum_probs=219.1
Q ss_pred cCCCchHHHHHHHHHHH---------cCCeEEEEcCCCChHH--HHHHHHHHhccc-CCCCeEEEecchHHHHHHHHHHH
Q 041899 7 KTLPIYHYREQVLRAVQ---------ENQVVVIVGETGSGKT--TQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~---------~~~~vii~apTGsGKT--~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~~~v 74 (650)
..--+++.|..+++.+. ..+++.|.|||||||| +.+|..-+-... -+.-+.+|++|++.|+.|+++.+
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f 235 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF 235 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH
Confidence 34457888988888873 3578999999999999 777765432211 12238999999999999999888
Q ss_pred HHHhCCccCcEeeeeeccccc-------CC----CCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCcccc--
Q 041899 75 SREMGVKLGHEVGYSIRFEDC-------TS----EKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTD-- 139 (650)
Q Consensus 75 ~~~~~~~~g~~vg~~~~~~~~-------~~----~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d-- 139 (650)
.+ +....|..|+......+. .+ ...+|+++|||.|.+.+.+.+ .|+++.++||||++ |.++..
T Consensus 236 ~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-Rll~qsfQ 313 (620)
T KOG0350|consen 236 KR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-RLLDQSFQ 313 (620)
T ss_pred HH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-HHHHHHHH
Confidence 54 544555555522211111 11 235899999999999998765 68999999999999 433321
Q ss_pred -H---HHHHHH------------------------HHHh----cCCCceEEEEccCC--ChHHHHhhhCCCC-ccccCCc
Q 041899 140 -I---LLGIFK------------------------DLVR----LRSDLKLLISSATL--DAEKFSAYFNFAP-ILRVPGR 184 (650)
Q Consensus 140 -~---ll~~l~------------------------~~~~----~~~~~kii~~SAT~--~~~~~~~~~~~~~-~~~~~~~ 184 (650)
+ ++..++ .+.. ..+.+.-+++|||+ ++..+.++--+.| ++.+.+.
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~ 393 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP 393 (620)
T ss_pred HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc
Confidence 1 111111 1111 12334467888988 7888887654444 3333221
Q ss_pred ccceeEEEecCC---------CCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEe
Q 041899 185 RYPVEIHYTKAP---------ESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCP 255 (650)
Q Consensus 185 ~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 255 (650)
.-..|.-++ +..... ..+..........++|+|+++.+.+.+++..|+-.+.. .+..+-.
T Consensus 394 ---~~~ryslp~~l~~~~vv~~~~~kp---l~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-----~~~~~s~ 462 (620)
T KOG0350|consen 394 ---LIGRYSLPSSLSHRLVVTEPKFKP---LAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-----DNFKVSE 462 (620)
T ss_pred ---cceeeecChhhhhceeecccccch---HhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc-----ccchhhh
Confidence 111121111 011111 12223333344678999999999999999999844322 2455666
Q ss_pred ecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhcccc
Q 041899 256 VYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRS 335 (650)
Q Consensus 256 lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRa 335 (650)
+.|+++...|.+.++.|..|.+++||||+++.+|+|+.+|+.||+ ++.|.+..+|+||+||+
T Consensus 463 ~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN------------------Yd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 463 FTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN------------------YDPPASDKTYVHRAGRT 524 (620)
T ss_pred hhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee------------------cCCCchhhHHHHhhccc
Confidence 899999999999999999999999999999999999999999999 55599999999999999
Q ss_pred CCCC-CcEEEEeeCcccc
Q 041899 336 GRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 336 GR~~-~G~~~~l~~~~~~ 352 (650)
+|.| .|.||.|.+..+.
T Consensus 525 ARAgq~G~a~tll~~~~~ 542 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEK 542 (620)
T ss_pred ccccCCceEEEeeccccc
Confidence 9999 6999999887653
No 65
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=260.68 Aligned_cols=310 Identities=22% Similarity=0.260 Sum_probs=232.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhc---cc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEA---GY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~---~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
-++.|.++++....+++++=.|-|||||| ++.|..+.-. .+ ..+.-.++++|+|+||.|+.... +.|+.-.|
T Consensus 246 ptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea-Kkf~K~yg 324 (731)
T KOG0339|consen 246 PTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA-KKFGKAYG 324 (731)
T ss_pred CCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHH-HHhhhhcc
Confidence 45678888998899999999999999999 5555554311 12 23447888999999999998554 55655444
Q ss_pred cEee--eee--ccc--ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce
Q 041899 84 HEVG--YSI--RFE--DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 84 ~~vg--~~~--~~~--~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 156 (650)
..+- |.- ..+ +.......|++||||.|+..+.-.. .+.+++++||||++ |..+..|.-.+-......+|+-|
T Consensus 325 l~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQ 403 (731)
T KOG0339|consen 325 LRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQ 403 (731)
T ss_pred ceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcce
Confidence 4332 111 111 1122578899999999999876544 79999999999999 88888887776666666899999
Q ss_pred EEEEccCC--ChHHHHhhhCCCCccccCCcc----cceeEE-EecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 041899 157 LLISSATL--DAEKFSAYFNFAPILRVPGRR----YPVEIH-YTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEE 229 (650)
Q Consensus 157 ii~~SAT~--~~~~~~~~~~~~~~~~~~~~~----~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 229 (650)
.+++|||. ..+.+++-+-..|+-.+.|.. -.++.. +........+.. .+..+......|++|+|+..+.+
T Consensus 404 tllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~w---l~~~L~~f~S~gkvlifVTKk~~ 480 (731)
T KOG0339|consen 404 TLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNW---LLRHLVEFSSEGKVLIFVTKKAD 480 (731)
T ss_pred EEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHH---HHHHhhhhccCCcEEEEEeccCC
Confidence 99999999 456666544445554443321 122221 222222222222 22233333457999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceec
Q 041899 230 IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWY 309 (650)
Q Consensus 230 i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~ 309 (650)
+++++..|.-. ++.+..+||++.+.+|.+++..|+.+...|+++|+++.+|+|||+++.||+
T Consensus 481 ~e~i~a~Lklk---------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------- 542 (731)
T KOG0339|consen 481 AEEIAANLKLK---------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------- 542 (731)
T ss_pred HHHHHHHhccc---------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec---------
Confidence 99999988754 899999999999999999999999999999999999999999999999998
Q ss_pred cCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 310 NPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 310 d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++...+...+.||+||.||.| .|..|.|.++.+-
T Consensus 543 ---------yD~ardIdththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 543 ---------YDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred ---------ccccchhHHHHHHhhhcccccccceeeEEechhhH
Confidence 556788999999999999999 6999999998764
No 66
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.5e-30 Score=255.04 Aligned_cols=309 Identities=20% Similarity=0.242 Sum_probs=227.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHH--HHhccc----CCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQY--LHEAGY----TKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~--l~~~~~----~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
-.-.|+.+++.+.++++++..|.|||||| +++|+. ++.... ..+...++++|||+||.|++.-+.+.. ..+
T Consensus 42 pTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~-~~c 120 (569)
T KOG0346|consen 42 PTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV-EYC 120 (569)
T ss_pred cchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH-HHH
Confidence 34678999999999999999999999999 677755 222211 123388999999999999998775522 111
Q ss_pred CcE-----eeeeeccc---ccCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 83 GHE-----VGYSIRFE---DCTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 83 g~~-----vg~~~~~~---~~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
+.. +....... ....+..+|+++||+.+++.+..+. .+..++++|+|||+ -.+...+-..+.+......
T Consensus 121 ~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LP 199 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLP 199 (569)
T ss_pred HHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhh-hhhhcccHHHHHHHHHhCC
Confidence 100 00000000 1123567899999999999998877 57889999999999 2222222222333333366
Q ss_pred CCceEEEEccCC--ChHHHHhhhCCCCcc-ccCCcc----cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 041899 153 SDLKLLISSATL--DAEKFSAYFNFAPIL-RVPGRR----YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLT 225 (650)
Q Consensus 153 ~~~kii~~SAT~--~~~~~~~~~~~~~~~-~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 225 (650)
+..|.++||||+ |...+...|...|++ ...... -.+..++....+.+... .+..++++..- .|++|||+|
T Consensus 200 r~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl-llyallKL~LI--~gKsliFVN 276 (569)
T KOG0346|consen 200 RIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL-LLYALLKLRLI--RGKSLIFVN 276 (569)
T ss_pred chhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH-HHHHHHHHHHh--cCceEEEEe
Confidence 788999999999 788999988777754 222221 23567777766554433 22233333322 689999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCC--------------------
Q 041899 226 GQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNI-------------------- 285 (650)
Q Consensus 226 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i-------------------- 285 (650)
+.+.+.++.-.|++. ++..+.+.|.||...|..++++|..|..+|||||+.
T Consensus 277 tIdr~YrLkLfLeqF---------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346|consen 277 TIDRCYRLKLFLEQF---------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred chhhhHHHHHHHHHh---------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCC
Confidence 999999999998886 788889999999999999999999999999999992
Q ss_pred ---------------ccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCc
Q 041899 286 ---------------AETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTI 349 (650)
Q Consensus 286 ---------------~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~ 349 (650)
..+|||+..|..|+| ++.|.+..+|+||+||++|.+ +|.+..++.+
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~V~~VlN------------------FD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 348 KNDKKSKKKLDKESGVSRGIDFHHVSNVLN------------------FDFPETVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred CCccccccccCchhchhccccchheeeeee------------------cCCCCchHHHHHhccccccCCCCCceEEEecc
Confidence 127999999999999 677999999999999999998 7999988876
Q ss_pred cc
Q 041899 350 NS 351 (650)
Q Consensus 350 ~~ 351 (650)
.+
T Consensus 410 ~e 411 (569)
T KOG0346|consen 410 KE 411 (569)
T ss_pred hH
Confidence 54
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=4.5e-29 Score=274.33 Aligned_cols=296 Identities=16% Similarity=0.090 Sum_probs=199.5
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
..++++|++++..+..+++.++++|||+|||..+..+.........++++|++|+++|+.|+.+++.+..........+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~- 191 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHK- 191 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeE-
Confidence 6789999999999888888999999999999765543322111223489999999999999999997643222111111
Q ss_pred eecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChH-
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAE- 167 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~- 167 (650)
...+ ........|+++|++.+.+.. ..++.++++||+||||. ... .-+..+++. ..+..+++++|||+...
T Consensus 192 i~~g-~~~~~~~~I~VaT~qsl~~~~--~~~~~~~~~iIvDEaH~-~~~-~~~~~il~~---~~~~~~~lGLTATp~~~~ 263 (501)
T PHA02558 192 IYSG-TAKDTDAPIVVSTWQSAVKQP--KEWFDQFGMVIVDECHL-FTG-KSLTSIITK---LDNCKFKFGLTGSLRDGK 263 (501)
T ss_pred EecC-cccCCCCCEEEeeHHHHhhch--hhhccccCEEEEEchhc-ccc-hhHHHHHHh---hhccceEEEEeccCCCcc
Confidence 1111 112245789999999987643 23578999999999993 322 222333332 22345789999999321
Q ss_pred ----HHHhhhCCCCcccc-------CCcccceeEEE--ecCC--------CCchHH------------HHHHHHHHHHhc
Q 041899 168 ----KFSAYFNFAPILRV-------PGRRYPVEIHY--TKAP--------ESNYID------------AAIVTTLEIHAT 214 (650)
Q Consensus 168 ----~~~~~~~~~~~~~~-------~~~~~~v~~~~--~~~~--------~~~~~~------------~~~~~~~~~~~~ 214 (650)
.+..+||... ..+ .|...++++.. ...+ ..++.. ..+........
T Consensus 264 ~~~~~~~~~fG~i~-~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~- 341 (501)
T PHA02558 264 ANILQYVGLFGDIF-KPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLA- 341 (501)
T ss_pred ccHHHHHHhhCCce-EEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHH-
Confidence 1334555211 110 12111222111 1101 011110 11111111111
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeC-CCccccCcCC
Q 041899 215 QASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLAT-NIAETSLTID 293 (650)
Q Consensus 215 ~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT-~i~e~gidip 293 (650)
..++++|||+++.++++.+++.|.+. +..+..+||+++.++|..+++.|++|+..||||| +++++|+|+|
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~---------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKV---------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHc---------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 34678999999999999999999874 5678999999999999999999999999999998 8999999999
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcE
Q 041899 294 GIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGK 342 (650)
Q Consensus 294 ~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~ 342 (650)
++++||. ...+.|...|.||+||+||.++|+
T Consensus 413 ~ld~vIl------------------~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 413 NLHHVIF------------------AHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccEEEE------------------ecCCcchhhhhhhhhccccCCCCC
Confidence 9999996 445678899999999999999775
No 68
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=3.5e-29 Score=285.49 Aligned_cols=321 Identities=23% Similarity=0.267 Sum_probs=226.9
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.+....+|.||.++++.+.+++++||+.|||||||-.+...+++.... ...+.+++.|+++||+++++++.+.... .+
T Consensus 65 ~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~-~~ 143 (851)
T COG1205 65 KAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISD-LP 143 (851)
T ss_pred HhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHh-CC
Confidence 355667999999999999999999999999999995554555554333 3348899999999999999999775432 22
Q ss_pred cEeeeee-----ccccc---CCCCceEEEEChHHHHHHHhcCC-----CCCCCceEEecccc-cCCccccHHHHHHHHHH
Q 041899 84 HEVGYSI-----RFEDC---TSEKTVLKYMTDGMVLREMLSDP-----KLESYSVLMVDEAH-ERTLSTDILLGIFKDLV 149 (650)
Q Consensus 84 ~~vg~~~-----~~~~~---~~~~~~i~~~T~~~Ll~~l~~~~-----~l~~~~~iIiDE~H-er~~~~d~ll~~l~~~~ 149 (650)
..++... ..+.. .....+|++++|.||-..++... .++++++||+||+| -|+....-+..+++++.
T Consensus 144 ~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~ 223 (851)
T COG1205 144 GKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLL 223 (851)
T ss_pred CcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHH
Confidence 2222111 11111 24578999999999977665433 36789999999999 47777666666666666
Q ss_pred hc----CCCceEEEEccCC-ChHHHH-hhhCCCCccc-cCCcccc--eeEEEecCC-C--------CchHHHHHHHHHHH
Q 041899 150 RL----RSDLKLLISSATL-DAEKFS-AYFNFAPILR-VPGRRYP--VEIHYTKAP-E--------SNYIDAAIVTTLEI 211 (650)
Q Consensus 150 ~~----~~~~kii~~SAT~-~~~~~~-~~~~~~~~~~-~~~~~~~--v~~~~~~~~-~--------~~~~~~~~~~~~~~ 211 (650)
.. ..++++|.+|||+ ++..+. ++++. .... +.+...| ...+....+ . .+... ....+...
T Consensus 224 ~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~-~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~-~~~~~~~~ 301 (851)
T COG1205 224 RRLRRYGSPLQIICTSATLANPGEFAEELFGR-DFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA-ELATLAAL 301 (851)
T ss_pred HHHhccCCCceEEEEeccccChHHHHHHhcCC-cceeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH-HHHHHHHH
Confidence 53 3479999999999 665554 45543 2222 3332222 222222222 0 01111 11122222
Q ss_pred HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCc
Q 041899 212 HATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLT 291 (650)
Q Consensus 212 ~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gid 291 (650)
.. ..+-++|+|+.++..++.++....+.+...+ ..-...+..++|+++.++|.+++..++.|+.+++++||++|.|+|
T Consensus 302 ~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelgid 379 (851)
T COG1205 302 LV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGID 379 (851)
T ss_pred HH-HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhcee
Confidence 11 2367899999999999999866666554433 122356888999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeccCCCCcccceeeec-CHHhHHhhccccCCCC-CcEEEEeeC
Q 041899 292 IDGIKYVVDSGYSKMKWYNPKTGMESLLVYPI-SKASAMQRAGRSGRTG-PGKCFRLYT 348 (650)
Q Consensus 292 ip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~-s~~~~~Qr~GRaGR~~-~G~~~~l~~ 348 (650)
|.+++.||..|+ |. |..++.||+|||||.+ .+..+..+.
T Consensus 380 iG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 380 IGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred ehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999876 66 8999999999999999 455554444
No 69
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=7.4e-30 Score=269.04 Aligned_cols=319 Identities=16% Similarity=0.221 Sum_probs=245.0
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
+-+.++|...+.++.+++.|+|+|-|.+|||..+..++... +..+.+|+|+.|-++|.+|.++.+..||+. +|.-.|
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~s-Lr~kQRVIYTSPIKALSNQKYREl~~EF~D-VGLMTG- 204 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMS-LREKQRVIYTSPIKALSNQKYRELLEEFKD-VGLMTG- 204 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHH-HHhcCeEEeeChhhhhcchhHHHHHHHhcc-cceeec-
Confidence 34889999999999999999999999999997777776654 445679999999999999999999999974 454444
Q ss_pred eecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccc-----cCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAH-----ERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
+-..++++..++||+++|..++.... -++.+..||+||+| ||++-.+-- +.-..++.+.|++||
T Consensus 205 ----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEET------IIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 205 ----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEET------IILLPDNVRFVFLSA 274 (1041)
T ss_pred ----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeee------EEeccccceEEEEec
Confidence 55567888899999999988887766 58899999999999 666554321 122456899999999
Q ss_pred CC-ChHHHHhhhC-----CCCccccCCcccceeEEEecCC----------CCchHHHHHH--------------------
Q 041899 163 TL-DAEKFSAYFN-----FAPILRVPGRRYPVEIHYTKAP----------ESNYIDAAIV-------------------- 206 (650)
Q Consensus 163 T~-~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~----------~~~~~~~~~~-------------------- 206 (650)
|+ |+..|++|.. .|.++..+.|+.|..++..+.. ..++.+..+.
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~ 354 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANK 354 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccccc
Confidence 99 8999999984 4677778888888877733311 1112111111
Q ss_pred ------------------HHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH------------------Hhhc---CC
Q 041899 207 ------------------TTLEIHATQASGDILVFLTGQEEIETVEEILKERI------------------RKLG---TK 247 (650)
Q Consensus 207 ------------------~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~------------------~~~~---~~ 247 (650)
.++.........+++||+-++++|+..|-.+.+.. ..+. .+
T Consensus 355 k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~ 434 (1041)
T KOG0948|consen 355 KGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRE 434 (1041)
T ss_pred ccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhcc
Confidence 22222223334689999999999999988875421 0011 11
Q ss_pred CC---------ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccc
Q 041899 248 IG---------ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESL 318 (650)
Q Consensus 248 ~~---------~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l 318 (650)
.| .-.+..+||||-+--++-|+-.|.+|-+|+|+||.+...|+|+|.-++|+- ..+.||..
T Consensus 435 LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~------ 504 (1041)
T KOG0948|consen 435 LPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGK------ 504 (1041)
T ss_pred chHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCc------
Confidence 12 113566899999999999999999999999999999999999998888874 35667765
Q ss_pred eeeecCHHhHHhhccccCCCC---CcEEEEeeCcc
Q 041899 319 LVYPISKASAMQRAGRSGRTG---PGKCFRLYTIN 350 (650)
Q Consensus 319 ~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 350 (650)
.-.|+|-.+|+||.|||||.| .|.|+.+.++.
T Consensus 505 ~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 456999999999999999999 69999998764
No 70
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=8.4e-29 Score=267.23 Aligned_cols=320 Identities=14% Similarity=0.186 Sum_probs=238.3
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.+.+..+|++++.++..+..|+|.|+|.+|||.++..++.-. ..+..+.+|+.|-++|.+|.++.+.+.||. +|
T Consensus 295 pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-vg---- 368 (1248)
T KOG0947|consen 295 PFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKFRDFKETFGD-VG---- 368 (1248)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchHHHHHHhccc-cc----
Confidence 456889999999999999999999999999997777666543 334569999999999999999999888874 33
Q ss_pred eeecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccc-----cCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 88 YSIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAH-----ERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+.++....+.+.+++||+++|..++.+.. .++++..||+||+| ||+.-.+-.+. -..+.+++|++|
T Consensus 369 -LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViI------MlP~HV~~IlLS 441 (1248)
T KOG0947|consen 369 -LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVII------MLPRHVNFILLS 441 (1248)
T ss_pred -eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeee------eccccceEEEEe
Confidence 345577788999999999999999888766 57899999999999 67765433222 246689999999
Q ss_pred cCC-ChHHHHhhhCCC-----CccccCCcccceeEEEecCCC--------CchH--------------------------
Q 041899 162 ATL-DAEKFSAYFNFA-----PILRVPGRRYPVEIHYTKAPE--------SNYI-------------------------- 201 (650)
Q Consensus 162 AT~-~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~--------~~~~-------------------------- 201 (650)
||+ |...|++|.|.. .++....|+.|.++++....+ ..++
T Consensus 442 ATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~ 521 (1248)
T KOG0947|consen 442 ATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDAR 521 (1248)
T ss_pred ccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccc
Confidence 999 899999999843 244455677777765322100 0000
Q ss_pred ---------------------------HH---HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH----------
Q 041899 202 ---------------------------DA---AIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI---------- 241 (650)
Q Consensus 202 ---------------------------~~---~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~---------- 241 (650)
.. .+..++.......--+++|||-+++.|++.++.|...-
T Consensus 522 ~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV 601 (1248)
T KOG0947|consen 522 GGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEV 601 (1248)
T ss_pred ccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHH
Confidence 00 11112222222334579999999999999999885421
Q ss_pred -----------HhhcCCCCc---------eEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeC
Q 041899 242 -----------RKLGTKIGE---------LIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDS 301 (650)
Q Consensus 242 -----------~~~~~~~~~---------~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~ 301 (650)
+....+.|. -.+..+|||+-+--++-|+..|..|-+|||+||.+.++|||+|.-++|+++
T Consensus 602 ~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~S 681 (1248)
T KOG0947|consen 602 HLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSS 681 (1248)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeee
Confidence 000111121 246778999999999999999999999999999999999999988888875
Q ss_pred CcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcc
Q 041899 302 GYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTIN 350 (650)
Q Consensus 302 G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 350 (650)
...+|... ..-..+.+|.||+|||||.| .|.++.+....
T Consensus 682 ----l~KhDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 682 ----LRKHDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ----hhhccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 33455442 23477899999999999999 68888776543
No 71
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.96 E-value=4.9e-30 Score=252.08 Aligned_cols=315 Identities=20% Similarity=0.240 Sum_probs=220.4
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhc--c------cCCCCeEEEecchHHHHHHHHHHHH
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEA--G------YTKHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~--~------~~~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
+...--.+.|-+-++.+..+++.|-.|-|||||| +.+|.+++.. . ...+.--++++|+|+||.|.+.-+.
T Consensus 188 KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 188 KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 4444456777788888899999999999999999 7777765432 1 1234478999999999999987664
Q ss_pred HHh------CCc---cCcEee-eeeccc-ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHH
Q 041899 76 REM------GVK---LGHEVG-YSIRFE-DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLG 143 (650)
Q Consensus 76 ~~~------~~~---~g~~vg-~~~~~~-~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~ 143 (650)
... |.+ .+..+| ..++.. .......+|+++|||.|..+|.... .|.-..++.+||++ |.++..|-..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEdd 346 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDD 346 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhh
Confidence 432 111 011111 112211 2234678999999999999887655 67788999999999 8777766444
Q ss_pred HHHHHHhcCCCceEEEEccCCCh--HHHHhhhCCCCccccCCcccceeEEEecCCCCchHHH--HHHHHHHHHhcCCCCC
Q 041899 144 IFKDLVRLRSDLKLLISSATLDA--EKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDA--AIVTTLEIHATQASGD 219 (650)
Q Consensus 144 ~l~~~~~~~~~~kii~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 219 (650)
+-..+.-.....+.+++|||++. +.|+.----.|+...-||.-.-..... .+-+|+.. .+..+++... ....+
T Consensus 347 ir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldVi--QevEyVkqEaKiVylLeCLQ-KT~Pp 423 (610)
T KOG0341|consen 347 IRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVI--QEVEYVKQEAKIVYLLECLQ-KTSPP 423 (610)
T ss_pred HHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHH--HHHHHHHhhhhhhhHHHHhc-cCCCc
Confidence 32222224455689999999953 334332212222222222110000000 01122222 1222233322 33678
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEE
Q 041899 220 ILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVV 299 (650)
Q Consensus 220 iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VI 299 (650)
+|||+..+.++..+.++|--. ++.+..+|||-.+++|...++.|+.|+.+|+|||+++..|+|+|+|.+||
T Consensus 424 VLIFaEkK~DVD~IhEYLLlK---------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI 494 (610)
T KOG0341|consen 424 VLIFAEKKADVDDIHEYLLLK---------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI 494 (610)
T ss_pred eEEEeccccChHHHHHHHHHc---------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc
Confidence 999999999999999998653 88999999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 300 d~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
| ++.|....+|.||+||+||.| .|..-.+..+..
T Consensus 495 N------------------yDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 495 N------------------YDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred c------------------CCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 9 677999999999999999999 588888877654
No 72
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.3e-27 Score=278.11 Aligned_cols=318 Identities=21% Similarity=0.240 Sum_probs=213.4
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
..++.++||.+++..+..+ +++|++|||+|||.++...+.......+++++|++|+++|+.|.++.+.+.++......+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 3567899999999887776 799999999999976655554433334679999999999999999999887665311111
Q ss_pred eeee--cccc--cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 87 GYSI--RFED--CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 87 g~~~--~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+.- .... ......+|+++|++++...+.... .+.++++||||||| +.........+.+......+...+++||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 0000 011356899999999988776554 57889999999999 4333322233344444455567899999
Q ss_pred cCC--ChHHHHhhhCCCC--ccccCC--------cccceeEEEec--CC-----------------------------CC
Q 041899 162 ATL--DAEKFSAYFNFAP--ILRVPG--------RRYPVEIHYTK--AP-----------------------------ES 198 (650)
Q Consensus 162 AT~--~~~~~~~~~~~~~--~~~~~~--------~~~~v~~~~~~--~~-----------------------------~~ 198 (650)
||+ +.+.+.+.+.+-. .+.+.. ...+.++.+.. .+ ..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 998 3333333322100 000000 00000000000 00 00
Q ss_pred ------c-------------------------------------------------hHH---------------------
Q 041899 199 ------N-------------------------------------------------YID--------------------- 202 (650)
Q Consensus 199 ------~-------------------------------------------------~~~--------------------- 202 (650)
+ |+.
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 0 000
Q ss_pred -----------------HHHHHHHHH----HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCC--
Q 041899 203 -----------------AAIVTTLEI----HATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYAN-- 259 (650)
Q Consensus 203 -----------------~~~~~~~~~----~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~-- 259 (650)
..+..+.++ ....+++++||||+++..++.+++.|... ++....+||.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~---------~~~~~~~~g~~~ 400 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE---------GIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC---------CCceEEEEcccc
Confidence 000001111 11145689999999999999999999653 4555666664
Q ss_pred ------CCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhcc
Q 041899 260 ------LPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAG 333 (650)
Q Consensus 260 ------l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~G 333 (650)
++..+|.++++.|++|..+|||||+++++|+|+|++++||+ ++.+.+...++||+|
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~------------------yd~~~s~~r~iQR~G 462 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF------------------YEPVPSEIRSIQRKG 462 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE------------------eCCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999999998 344678999999999
Q ss_pred ccCCCCCcEEEEeeCccccc
Q 041899 334 RSGRTGPGKCFRLYTINSYQ 353 (650)
Q Consensus 334 RaGR~~~G~~~~l~~~~~~~ 353 (650)
|+||.++|.+|.|+++...+
T Consensus 463 R~gR~~~~~v~~l~~~~t~e 482 (773)
T PRK13766 463 RTGRQEEGRVVVLIAKGTRD 482 (773)
T ss_pred ccCcCCCCEEEEEEeCCChH
Confidence 99999999999999876543
No 73
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=4.9e-29 Score=255.31 Aligned_cols=311 Identities=22% Similarity=0.254 Sum_probs=212.1
Q ss_pred chHHHHHHHHHHHcC-CeEEEEcCCCChHH--HHHHHHHH-----------hcccCCCCe--EEEecchHHHHHHHHHHH
Q 041899 11 IYHYREQVLRAVQEN-QVVVIVGETGSGKT--TQIPQYLH-----------EAGYTKHGK--VGCTQPRRVAAISVAARV 74 (650)
Q Consensus 11 l~~~q~~~l~~l~~~-~~vii~apTGsGKT--~~ip~~l~-----------~~~~~~~~~--ilv~~P~r~la~q~~~~v 74 (650)
-.+.|...+++...+ .+++-.|.|||||| +-+|+.-. ...-.+..+ .+|+.|||+||.|+.+.+
T Consensus 204 Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl 283 (731)
T KOG0347|consen 204 PTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHL 283 (731)
T ss_pred CccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHH
Confidence 456778888776665 88999999999999 56665540 000111224 899999999999999888
Q ss_pred HHHh---CCccCcEee-eee-cccccCCCCceEEEEChHHHHHHHhcCC----CCCCCceEEecccccCCccccH---HH
Q 041899 75 SREM---GVKLGHEVG-YSI-RFEDCTSEKTVLKYMTDGMVLREMLSDP----KLESYSVLMVDEAHERTLSTDI---LL 142 (650)
Q Consensus 75 ~~~~---~~~~g~~vg-~~~-~~~~~~~~~~~i~~~T~~~Ll~~l~~~~----~l~~~~~iIiDE~Her~~~~d~---ll 142 (650)
.... +..+...+| ..+ .-+...+...+|+++|||.|+..+..+. .++++.++|+||++ |.+.-.. +-
T Consensus 284 ~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaD-RmvekghF~Els 362 (731)
T KOG0347|consen 284 KAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEAD-RMVEKGHFEELS 362 (731)
T ss_pred HHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHH-HHhhhccHHHHH
Confidence 5532 222222233 111 1112233578999999999999887665 47889999999999 6665433 33
Q ss_pred HHHHHHHh--cCCCceEEEEccCCChHHHHhhhC----C-------CCc---c-ccCCcccceeEEEecCCCCchHHHHH
Q 041899 143 GIFKDLVR--LRSDLKLLISSATLDAEKFSAYFN----F-------API---L-RVPGRRYPVEIHYTKAPESNYIDAAI 205 (650)
Q Consensus 143 ~~l~~~~~--~~~~~kii~~SAT~~~~~~~~~~~----~-------~~~---~-~~~~~~~~v~~~~~~~~~~~~~~~~~ 205 (650)
.+++.+.. .++..|.+++|||+.....+..-. . .++ + .+.-+.-| ++.-. .+.........
T Consensus 363 ~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp-kiiD~-t~q~~ta~~l~ 440 (731)
T KOG0347|consen 363 KLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP-KIIDL-TPQSATASTLT 440 (731)
T ss_pred HHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC-eeEec-CcchhHHHHHH
Confidence 34444432 345679999999985432221110 0 000 0 00011111 11111 11111111111
Q ss_pred HHHHHH-----------HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCC
Q 041899 206 VTTLEI-----------HATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPD 274 (650)
Q Consensus 206 ~~~~~~-----------~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~ 274 (650)
...+.. ....-+|++|||||+.+.+.+++-.|... ++...++|+.|.+.+|.+-++.|++
T Consensus 441 Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L---------~i~p~~LHA~M~QKqRLknLEkF~~ 511 (731)
T KOG0347|consen 441 ESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNL---------DIPPLPLHASMIQKQRLKNLEKFKQ 511 (731)
T ss_pred HHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhc---------CCCCchhhHHHHHHHHHHhHHHHhc
Confidence 111111 11234799999999999999999999875 7788999999999999999999999
Q ss_pred CCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 275 GARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 275 g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
..--||+||++|++|+|||+|.+||+ +..|-+...|+||.||+.|.+ .|....|+.+.+
T Consensus 512 ~~~~VLiaTDVAARGLDIp~V~HVIH------------------YqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 512 SPSGVLIATDVAARGLDIPGVQHVIH------------------YQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred CCCeEEEeehhhhccCCCCCcceEEE------------------eecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999 777999999999999999999 699999887755
No 74
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1e-27 Score=269.37 Aligned_cols=325 Identities=18% Similarity=0.201 Sum_probs=239.6
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
....++++|++.+.++..++.|+|+||||||||.+...++... ...+.+++|+.|.++|.+|.++++..++|.- ...+
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~a-l~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~v 193 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALA-LRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMV 193 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHH-HHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhc
Confidence 4577999999999999999999999999999997777776655 3446679999999999999999999999854 2223
Q ss_pred eeeecccccCCCCceEEEEChHHHHHHHhcC-CCCCCCceEEecccc-----cCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMVLREMLSD-PKLESYSVLMVDEAH-----ERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~-~~l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
| -..++...++++.+.+||+++|-.++..+ .++.++..||+||+| +|+.-.+-. ++....++++|+|
T Consensus 194 G-L~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~------Ii~lP~~v~~v~L 266 (1041)
T COG4581 194 G-LMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEV------IILLPDHVRFVFL 266 (1041)
T ss_pred c-ceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHH------HHhcCCCCcEEEE
Confidence 3 22335566788999999999998888877 489999999999999 455433322 2234567899999
Q ss_pred ccCC-ChHHHHhhhC-----CCCccccCCcccceeEEEecCC--------CCchHHHH----HH----------------
Q 041899 161 SATL-DAEKFSAYFN-----FAPILRVPGRRYPVEIHYTKAP--------ESNYIDAA----IV---------------- 206 (650)
Q Consensus 161 SAT~-~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~--------~~~~~~~~----~~---------------- 206 (650)
|||+ |++.|+.|++ .+.++..+.|+.|.+.++.... ..+..... ..
T Consensus 267 SATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 346 (1041)
T COG4581 267 SATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGD 346 (1041)
T ss_pred eCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccc
Confidence 9999 9999999997 4556777788888888775531 01100000 00
Q ss_pred ----------------------HHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHH-------------------HHhhc
Q 041899 207 ----------------------TTLEIHATQASGDILVFLTGQEEIETVEEILKER-------------------IRKLG 245 (650)
Q Consensus 207 ----------------------~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~-------------------~~~~~ 245 (650)
.++........-++++|+-++..|+..+..+... +..+.
T Consensus 347 ~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~ 426 (1041)
T COG4581 347 VGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLA 426 (1041)
T ss_pred cccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcC
Confidence 0111111122357999999999999888877521 11111
Q ss_pred CCCCce-------------EEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899 246 TKIGEL-------------IVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK 312 (650)
Q Consensus 246 ~~~~~~-------------~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~ 312 (650)
.+.-++ .+..+|+||-+..+..+...|..|-+||++||.+...|+|+|.-+ |+-+++. .||..
T Consensus 427 ~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart-vv~~~l~---K~dG~ 502 (1041)
T COG4581 427 EEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART-VVFTSLS---KFDGN 502 (1041)
T ss_pred hhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc-eeeeeeE---EecCC
Confidence 111111 234679999999999999999999999999999999999999544 4544543 35532
Q ss_pred CCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcc
Q 041899 313 TGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTIN 350 (650)
Q Consensus 313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 350 (650)
...+.+..+|.|+.|||||.| .|.++...+..
T Consensus 503 ------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 503 ------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ------ceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 345899999999999999999 69988885543
No 75
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1e-27 Score=249.29 Aligned_cols=309 Identities=19% Similarity=0.244 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccC----C-CCeEEEecchHHHHHHHHHHHHHHhCCccC--
Q 041899 13 HYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYT----K-HGKVGCTQPRRVAAISVAARVSREMGVKLG-- 83 (650)
Q Consensus 13 ~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~----~-~~~ilv~~P~r~la~q~~~~v~~~~~~~~g-- 83 (650)
+.|.++++.+..+++++.||||||||| +.+|.+..-.... + +-+++|+.|+|+|+.|++..+.+ +..+-|
T Consensus 161 ~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k-~~~~~~t~ 239 (593)
T KOG0344|consen 161 PIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK-YSIDEGTS 239 (593)
T ss_pred cccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh-cCCCCCCc
Confidence 457789999999999999999999999 6677553322121 2 23899999999999999987755 331111
Q ss_pred c-Eee--eeeccc----ccCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccccCCccccHHHHHHHHHHh--c
Q 041899 84 H-EVG--YSIRFE----DCTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAHERTLSTDILLGIFKDLVR--L 151 (650)
Q Consensus 84 ~-~vg--~~~~~~----~~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~--~ 151 (650)
. ..+ |...-. .......++.+.||-.+...+...+ .++++.++|+||++ +-..-..+...+..+.. .
T Consensus 240 ~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~ 318 (593)
T KOG0344|consen 240 LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQ 318 (593)
T ss_pred hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhc
Confidence 1 111 110000 1112356789999999888887765 78999999999999 33333344444444444 4
Q ss_pred CCCceEEEEccCC--ChHHHHhhhCCCCccccCCcc----cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 041899 152 RSDLKLLISSATL--DAEKFSAYFNFAPILRVPGRR----YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLT 225 (650)
Q Consensus 152 ~~~~kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 225 (650)
.+++++=++|||. ..+.+.......++..+-|.. -.|+....-...... .+..+.++....-..++|||+.
T Consensus 319 s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~---K~lA~rq~v~~g~~PP~lIfVQ 395 (593)
T KOG0344|consen 319 SPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKG---KLLALRQLVASGFKPPVLIFVQ 395 (593)
T ss_pred CcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchh---HHHHHHHHHhccCCCCeEEEEe
Confidence 4788889999998 455555544333222211111 112221111111111 1223333333334678999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccc
Q 041899 226 GQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSK 305 (650)
Q Consensus 226 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k 305 (650)
+.+.+..+...|.. .+++.+..+||..++.+|...++.|+.|++.|++||+++++|+|+.+|+.||+
T Consensus 396 s~eRak~L~~~L~~--------~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----- 462 (593)
T KOG0344|consen 396 SKERAKQLFEELEI--------YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----- 462 (593)
T ss_pred cHHHHHHHHHHhhh--------ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe-----
Confidence 99999999988852 24788999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 306 MKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 306 ~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|.|..+|+||+||+||.| +|..|.+|+.++.
T Consensus 463 -------------yD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 463 -------------YDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred -------------cCCCchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 667999999999999999999 6999999998554
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.95 E-value=2.1e-27 Score=236.46 Aligned_cols=305 Identities=17% Similarity=0.173 Sum_probs=209.2
Q ss_pred HHHHHHHHH-HHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee--
Q 041899 13 HYREQVLRA-VQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG-- 87 (650)
Q Consensus 13 ~~q~~~l~~-l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg-- 87 (650)
+.|++++.+ +..+++|.|+.|||+||| +|+|..+. ++-.+|+.|..+|...+.+.+.. +..++...-.
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDHL~~-LKVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDHLKR-LKVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHHHHh-cCCchhHhcchh
Confidence 568888877 567889999999999999 78887664 34678999999999988877744 3333321111
Q ss_pred -ee-----ecccccCCCCceEEEEChHHHHH-----HHhcCCCCCCCceEEecccccCCcc-ccHHHH--HHHHHHhcCC
Q 041899 88 -YS-----IRFEDCTSEKTVLKYMTDGMVLR-----EMLSDPKLESYSVLMVDEAHERTLS-TDILLG--IFKDLVRLRS 153 (650)
Q Consensus 88 -~~-----~~~~~~~~~~~~i~~~T~~~Ll~-----~l~~~~~l~~~~~iIiDE~Her~~~-~d~ll~--~l~~~~~~~~ 153 (650)
.. +..-....+.+.++|.||++--. .|..--.-..++++|+||+|.-+.. -||--. .+-.+....+
T Consensus 96 St~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~ 175 (641)
T KOG0352|consen 96 STVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCP 175 (641)
T ss_pred hHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCC
Confidence 00 01112344678999999985421 1111112345789999999953322 133222 2334455778
Q ss_pred CceEEEEccCCChHHHHhhh----CCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHH-------------hcCC
Q 041899 154 DLKLLISSATLDAEKFSAYF----NFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIH-------------ATQA 216 (650)
Q Consensus 154 ~~kii~~SAT~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 216 (650)
+...+.++||.+++.-.+.+ -..|+-......|.-..+|... -.+.+......+.+.. ...-
T Consensus 176 ~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~-~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~ 254 (641)
T KOG0352|consen 176 GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNH-MKSFITDCLTVLADFSSSNLGKHEKASQNKKTF 254 (641)
T ss_pred CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHH-HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCc
Confidence 99999999999766433322 2334433333334333333211 0111111111111111 0111
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeE
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIK 296 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~ 296 (650)
.|..||||.|++++++++-.|... ++....+|+||...+|..+.+++-+++..||+||+..++|||-|+|+
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~---------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VR 325 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIA---------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVR 325 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhc---------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCccee
Confidence 478899999999999999999875 88899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 297 YVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 297 ~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+||+ +..+.+.+-|.|..|||||.| +..|-..|++++.
T Consensus 326 FViH------------------W~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~ 364 (641)
T KOG0352|consen 326 FVIH------------------WSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDK 364 (641)
T ss_pred EEEe------------------cCchhhhHHHHHhccccccCCCccceeeeecccch
Confidence 9999 666899999999999999999 5667666777654
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=3.1e-26 Score=253.38 Aligned_cols=303 Identities=15% Similarity=0.154 Sum_probs=196.3
Q ss_pred cCCCchHHHHHHHHHHHcC---CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 7 KTLPIYHYREQVLRAVQEN---QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
....+++||+++++.+..+ +..+|++|||+|||.+...++... +++++|++|+..|+.|..+.+.+......+
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 3456899999999997643 368999999999997665554432 457999999999999999999775543332
Q ss_pred cEeeeeecccccCCCCceEEEEChHHHHHHHhcC-------CCC--CCCceEEecccccCCccccHHHHHHHHHHhcCCC
Q 041899 84 HEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSD-------PKL--ESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSD 154 (650)
Q Consensus 84 ~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~-------~~l--~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~ 154 (650)
....|.-...........|+++|+.++....... ..+ ..+++||+|||| +.. ... .+.+......
T Consensus 328 ~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH-~lp-A~~----fr~il~~l~a 401 (732)
T TIGR00603 328 QICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVH-VVP-AAM----FRRVLTIVQA 401 (732)
T ss_pred eEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccc-ccc-HHH----HHHHHHhcCc
Confidence 2211211111111234679999999875321111 122 468999999999 332 222 2222222233
Q ss_pred ceEEEEccCCC--hH---HHHhhhCCCCcccc-------CCcccceeE--EEecCCCCc---hH----------------
Q 041899 155 LKLLISSATLD--AE---KFSAYFNFAPILRV-------PGRRYPVEI--HYTKAPESN---YI---------------- 201 (650)
Q Consensus 155 ~kii~~SAT~~--~~---~~~~~~~~~~~~~~-------~~~~~~v~~--~~~~~~~~~---~~---------------- 201 (650)
...+++|||+. -+ .+..++| +.+... .|..-+++. .+.+.+... |.
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 45799999992 12 2333444 222222 232223322 122211111 10
Q ss_pred -HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC-CcEE
Q 041899 202 -DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-ARKV 279 (650)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~ki 279 (650)
...+..++..+. ..+.++||||.+...+..++..|. +..+||+++..+|.++++.|+.| ..++
T Consensus 481 K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~--------------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 481 KFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLG--------------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred HHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcC--------------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 011112333332 356799999999988887777552 23479999999999999999865 7899
Q ss_pred EEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeee-cCHHhHHhhccccCCCCCc-EE-------EEeeCcc
Q 041899 280 VLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYP-ISKASAMQRAGRSGRTGPG-KC-------FRLYTIN 350 (650)
Q Consensus 280 lvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~-~s~~~~~Qr~GRaGR~~~G-~~-------~~l~~~~ 350 (650)
||+|+++.+|||+|++++||. ...| .|..+|+||.||++|.++| .+ |.|++++
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~------------------~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQ------------------ISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred EEEecccccccCCCCCCEEEE------------------eCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 999999999999999999997 3333 5899999999999999864 33 7887776
Q ss_pred ccc
Q 041899 351 SYQ 353 (650)
Q Consensus 351 ~~~ 353 (650)
..+
T Consensus 608 T~E 610 (732)
T TIGR00603 608 TQE 610 (732)
T ss_pred chH
Confidence 553
No 78
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.95 E-value=1.3e-27 Score=248.36 Aligned_cols=312 Identities=15% Similarity=0.203 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHh----CCccCcE
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREM----GVKLGHE 85 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~----~~~~g~~ 85 (650)
.+.|..+++++..+-++||++..|+|||.++..+..+..-. ....+++++|||++|.|+.+.+.+.. |..+...
T Consensus 49 tkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvf 128 (980)
T KOG4284|consen 49 TKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVF 128 (980)
T ss_pred CchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEE
Confidence 47899999999999999999999999995544444433211 23488999999999999998886632 3333333
Q ss_pred ee-eeecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEcc
Q 041899 86 VG-YSIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSA 162 (650)
Q Consensus 86 vg-~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SA 162 (650)
+| ..+..+...-..++|+++|||.+.+..-.+- ++++++++|+|||+ .-+++..+..-+..+.. +....+++.+||
T Consensus 129 IGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~~rQv~a~SA 207 (980)
T KOG4284|consen 129 IGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQIRQVAAFSA 207 (980)
T ss_pred ecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcchhheeeEEec
Confidence 43 2222333334678999999999988776554 68899999999999 44554544555555544 566678999999
Q ss_pred CCC---hHHHHhhhCCCCccccCCc---ccceeEEEecCCCCc----hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 041899 163 TLD---AEKFSAYFNFAPILRVPGR---RYPVEIHYTKAPESN----YIDAAIVTTLEIHATQASGDILVFLTGQEEIET 232 (650)
Q Consensus 163 T~~---~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~ 232 (650)
|-+ .+.++.|+.++-++....+ .+-++.++...+..+ -+...+..+-++...-+-.+.||||+....++.
T Consensus 208 TYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~ 287 (980)
T KOG4284|consen 208 TYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEP 287 (980)
T ss_pred cCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhH
Confidence 984 3477888876655554433 244555554433322 233344455566666667889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899 233 VEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK 312 (650)
Q Consensus 233 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~ 312 (650)
++..|... ++.+..+.|.|++.+|..+++.++.-..+|||+|+..++|||-|+|+.||+
T Consensus 288 ~a~~L~ss---------G~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN------------ 346 (980)
T KOG4284|consen 288 IATHLKSS---------GLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN------------ 346 (980)
T ss_pred HHHHhhcc---------CCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe------------
Confidence 99999764 888999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 313 TGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
.+.|.+-..|.||+|||||.| .|..+.+...+.
T Consensus 347 ------iD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 347 ------IDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred ------cCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 677999999999999999999 598888875443
No 79
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.2e-26 Score=255.92 Aligned_cols=309 Identities=21% Similarity=0.252 Sum_probs=228.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcc-----cCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAG-----YTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~-----~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+..+.|.+++++|..++++|.+|.|||||| +.+|++-.... ...+.-.+++.|+|+|+.|+.+.+.... ..+
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~-k~l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFL-KLL 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHH-hhc
Confidence 677899999999999999999999999999 66777633221 1224478999999999999998886643 334
Q ss_pred CcEee--ee-eccc---ccCCCCceEEEEChHHHHHHHhcCC----CCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 83 GHEVG--YS-IRFE---DCTSEKTVLKYMTDGMVLREMLSDP----KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 83 g~~vg--~~-~~~~---~~~~~~~~i~~~T~~~Ll~~l~~~~----~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
|..+- |. .+.. ......+.|+|||+|..+..+..+. .+.++.++|+||++ |..+..+.-...+.+...+
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD-rmfdmgfePq~~~Ii~nlr 544 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD-RMFDMGFEPQITRILQNLR 544 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh-hhheeccCcccchHHhhcc
Confidence 44322 11 1111 1122458999999998877665433 46777799999999 7776666666666556689
Q ss_pred CCceEEEEccCCC--hHHHHhhhCCCCcc-ccCCcc---cceeEEEecCC-CCchHHHHHHHHHHHHhcCCCCCEEEEeC
Q 041899 153 SDLKLLISSATLD--AEKFSAYFNFAPIL-RVPGRR---YPVEIHYTKAP-ESNYIDAAIVTTLEIHATQASGDILVFLT 225 (650)
Q Consensus 153 ~~~kii~~SAT~~--~~~~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iLVF~~ 225 (650)
++.|.+++|||.+ .+.++.-....|+. .+.++. -.|+..+...+ +.+.+.... .++... ...+++||||.
T Consensus 545 pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~-eLl~e~--~e~~~tiiFv~ 621 (997)
T KOG0334|consen 545 PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLL-ELLGER--YEDGKTIIFVD 621 (997)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHH-HHHHHH--hhcCCEEEEEc
Confidence 9999999999984 34555544445543 222332 13444444444 333333222 222222 33899999999
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccc
Q 041899 226 GQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSK 305 (650)
Q Consensus 226 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k 305 (650)
..+.+..+.+.|.+. ++.+..+||+.+..+|..+++.|++|..++++||+++.+|+|++++..||+
T Consensus 622 ~qe~~d~l~~~L~~a---------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----- 687 (997)
T KOG0334|consen 622 KQEKADALLRDLQKA---------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----- 687 (997)
T ss_pred CchHHHHHHHHHHhc---------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE-----
Confidence 999999999999864 777778999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 306 MKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 306 ~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
++.|--.+.|.||.||+||.| .|.||.+.+++
T Consensus 688 -------------yd~pnh~edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 688 -------------YDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred -------------cccchhHHHHHHHhcccccCCccceeEEEeChH
Confidence 455667778999999999999 59999998874
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=4.7e-26 Score=267.58 Aligned_cols=273 Identities=15% Similarity=0.175 Sum_probs=179.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHH-HHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQ-IPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
....+++|.++++.+..+++++++||||||||+. ++..... ..++.+++|++|||+|+.|+++++.. ++...+..+
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l--~~~g~~alIL~PTreLa~Qi~~~l~~-l~~~~~~~~ 154 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYL--AKKGKKSYIIFPTRLLVEQVVEKLEK-FGEKVGCGV 154 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHH--HhcCCeEEEEeccHHHHHHHHHHHHH-HhhhcCceE
Confidence 4578999999999999999999999999999953 3322222 22466999999999999999999865 444444332
Q ss_pred eeeecccc------------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCcc----c-------cH---
Q 041899 87 GYSIRFED------------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLS----T-------DI--- 140 (650)
Q Consensus 87 g~~~~~~~------------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~----~-------d~--- 140 (650)
........ ......+|+++|++.|.+.+. .-...+++++||||||. .+. . .|
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~-~L~~~k~id~~l~~lGF~~~ 232 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA-VLKSSKNIDKLLYLLGFSEE 232 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH-hhhcccchhhHHHhCCCCHH
Confidence 21111110 012457899999999988765 22345699999999993 221 1 11
Q ss_pred -HHHHHHHH----------------Hh-----cCCCceEEEEccCCChHHHH-hhhCCCCccccCCc---ccceeEEEec
Q 041899 141 -LLGIFKDL----------------VR-----LRSDLKLLISSATLDAEKFS-AYFNFAPILRVPGR---RYPVEIHYTK 194 (650)
Q Consensus 141 -ll~~l~~~----------------~~-----~~~~~kii~~SAT~~~~~~~-~~~~~~~~~~~~~~---~~~v~~~~~~ 194 (650)
+...+..+ .. ...+.+++++|||+++.... .+|...-.+.+... ...+...|..
T Consensus 233 ~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~ 312 (1176)
T PRK09401 233 DIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIV 312 (1176)
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCcccccCCceEEEEE
Confidence 11111111 00 01157899999999654222 12221111222111 1235555554
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH---HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCC
Q 041899 195 APESNYIDAAIVTTLEIHATQASGDILVFLTGQEE---IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVP 271 (650)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 271 (650)
.. +... .+..+.... +..+||||++... ++.+++.|... ++.+..+||+| + +.++.
T Consensus 313 ~~--~k~~----~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~---------gi~v~~~hg~l----~-~~l~~ 371 (1176)
T PRK09401 313 DE--DSVE----KLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL---------GINAELAISGF----E-RKFEK 371 (1176)
T ss_pred cc--cHHH----HHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC---------CCcEEEEeCcH----H-HHHHH
Confidence 33 2222 222232222 4579999998766 99999998875 78899999999 2 23499
Q ss_pred CCCCCcEEEEe----CCCccccCcCCC-eEEEEeCCcccc
Q 041899 272 TPDGARKVVLA----TNIAETSLTIDG-IKYVVDSGYSKM 306 (650)
Q Consensus 272 ~~~g~~kilva----T~i~e~gidip~-v~~VId~G~~k~ 306 (650)
|++|+.+|||| |+++++|||+|+ |++||++|..+.
T Consensus 372 F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 372 FEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred HHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 99999999999 699999999999 899999887653
No 81
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3e-26 Score=227.32 Aligned_cols=306 Identities=18% Similarity=0.279 Sum_probs=224.2
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc--cCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc----E
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG--YTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH----E 85 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~----~ 85 (650)
...|+.++..+.++.++++++.+|+|||......++... -.+...++++.|+|+||.|..+.+ ..+|...+. .
T Consensus 50 SaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~v~~~ 128 (397)
T KOG0327|consen 50 SAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVV-RALGDHMDVSVHAC 128 (397)
T ss_pred hHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHH-Hhhhcccceeeeee
Confidence 456777777778899999999999999944333333321 122337899999999999999544 445543332 2
Q ss_pred eeeeecc-cc--cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 86 VGYSIRF-ED--CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 86 vg~~~~~-~~--~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+|-.... +. .......|++.|||..+..+.... ....+.++|+||++|+ +..++...+........++.|++++|
T Consensus 129 igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~S 207 (397)
T KOG0327|consen 129 IGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQVVLLS 207 (397)
T ss_pred cCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhh-hccchHHHHHHHHHHcCcchhheeec
Confidence 3321111 11 122347899999999988876654 3456899999999954 33445555555555578899999999
Q ss_pred cCCCh--HHHHhhhCCCCccc-cCCc--c-cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 162 ATLDA--EKFSAYFNFAPILR-VPGR--R-YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 162 AT~~~--~~~~~~~~~~~~~~-~~~~--~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
||++. ..+.+-|...|+.. +... + --++.+|....... .+..+..++. .-.+.+|||+|++.+..+..
T Consensus 208 AT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~----k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~ 281 (397)
T KOG0327|consen 208 ATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE----KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTD 281 (397)
T ss_pred ccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc----cccHHHHHHH--hhhcceEEecchhhHHHHHH
Confidence 99954 45666665554322 1111 1 12334444433333 3445555555 46778999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.|... +..+..+|+.|.+.+|..+...|+.|..+|||+|+.+++|+|+..+..||+
T Consensus 282 ~L~~~---------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------------- 337 (397)
T KOG0327|consen 282 KLRAH---------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------------- 337 (397)
T ss_pred HHhhC---------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee---------------
Confidence 99554 788999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
++.|..+.+|.+|+||+||.| +|....+.++.+.
T Consensus 338 ---ydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~ 372 (397)
T KOG0327|consen 338 ---YDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDV 372 (397)
T ss_pred ---eccccchhhhhhhcccccccCCCceeeeeehHhhH
Confidence 667999999999999999999 7999999887654
No 82
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.94 E-value=3.5e-26 Score=258.96 Aligned_cols=306 Identities=17% Similarity=0.201 Sum_probs=216.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
.++-|.+++.+++.|++++|..|||+||| +|+|.++.. +-.+|+.|..+|...+...+.. .+.......+-
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~------gitvVISPL~SLm~DQv~~L~~-~~I~a~~L~s~ 337 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLG------GVTVVISPLISLMQDQVTHLSK-KGIPACFLSSI 337 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccC------CceEEeccHHHHHHHHHHhhhh-cCcceeecccc
Confidence 46789999999999999999999999999 889887753 4789999999999988877722 33322111111
Q ss_pred eec------cccc--CCCCceEEEEChHHHHH------HHhcCCCCCCCceEEecccccCC---ccccHHHHHHHHHHhc
Q 041899 89 SIR------FEDC--TSEKTVLKYMTDGMVLR------EMLSDPKLESYSVLMVDEAHERT---LSTDILLGIFKDLVRL 151 (650)
Q Consensus 89 ~~~------~~~~--~~~~~~i~~~T~~~Ll~------~l~~~~~l~~~~~iIiDE~Her~---~~~d~ll~~l~~~~~~ 151 (650)
+.. +... .....+|+|+||+.+.. .+.......-+.++||||||.-+ .+..--...+..+...
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~ 417 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR 417 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh
Confidence 111 0111 12367899999997743 22111122228999999999433 2222223334444456
Q ss_pred CCCceEEEEccCCChH---HHHhhhC--CCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 041899 152 RSDLKLLISSATLDAE---KFSAYFN--FAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTG 226 (650)
Q Consensus 152 ~~~~kii~~SAT~~~~---~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~ 226 (650)
.+...+|.+|||.... ++.+-++ ++.++.-... +-..+|.-.+..+ .+.............+.+.+||+|.+
T Consensus 418 ~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfn--R~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~IIYC~s 494 (941)
T KOG0351|consen 418 FPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFN--RPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGIIYCLS 494 (941)
T ss_pred CCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCC--CCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeEEEeCC
Confidence 6778999999999543 4555444 2222221111 1122222211111 12222233344445667899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 227 QEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 227 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
+.+++.++..|... ++....||+||++.+|..|...|-.++.+|||||=+.++|||.|||+.||+.++
T Consensus 495 r~~ce~vs~~L~~~---------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l--- 562 (941)
T KOG0351|consen 495 RKECEQVSAVLRSL---------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL--- 562 (941)
T ss_pred cchHHHHHHHHHHh---------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC---
Confidence 99999999999886 577889999999999999999999999999999999999999999999999655
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccccc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSYQ 353 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~~ 353 (650)
|.|...|.|-+|||||.| +..|..+|...++.
T Consensus 563 ---------------Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~ 595 (941)
T KOG0351|consen 563 ---------------PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADIS 595 (941)
T ss_pred ---------------chhHHHHHHhccccCcCCCcceeEEecchhHHH
Confidence 899999999999999999 78999999877653
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=3.6e-25 Score=250.09 Aligned_cols=315 Identities=16% Similarity=0.174 Sum_probs=203.1
Q ss_pred CCCchHHHHHHHHHHHc---CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 8 TLPIYHYREQVLRAVQE---NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~---~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
...+++.|+++++.+.+ ++++++.||||||||..+...+.+. +..++++++++|+++|+.|+++++.+.+|..+..
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~-l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEV-LAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 34589999999999887 4789999999999996665544433 3446789999999999999999999888765544
Q ss_pred Eeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHH----HHHHHHHHhcCCC
Q 041899 85 EVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDIL----LGIFKDLVRLRSD 154 (650)
Q Consensus 85 ~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l----l~~l~~~~~~~~~ 154 (650)
..|.....+ .......+|+++|++.+. ..+.++++|||||+|+-+...+-. ..-+........+
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~ 294 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLEN 294 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccC
Confidence 443211111 112345789999997654 237889999999999644332210 0011122234568
Q ss_pred ceEEEEccCCChHHHHhhhC-CCCccccCCcc----cceeEEEecCCC------CchH-HHHHHHHHHHHhcCCCCCEEE
Q 041899 155 LKLLISSATLDAEKFSAYFN-FAPILRVPGRR----YPVEIHYTKAPE------SNYI-DAAIVTTLEIHATQASGDILV 222 (650)
Q Consensus 155 ~kii~~SAT~~~~~~~~~~~-~~~~~~~~~~~----~~v~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~iLV 222 (650)
.++|++|||+..+.+..... ....+..+.+. .| .+....... ...+ ...+..+.+.. ..+.++||
T Consensus 295 ~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l--~~g~qvll 371 (679)
T PRK05580 295 IPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQRL--ERGEQVLL 371 (679)
T ss_pred CCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHHHH--HcCCeEEE
Confidence 89999999998887766432 22233333221 22 222222110 0111 12222222221 23568899
Q ss_pred EeCCHH------------------------------------------------------------HHHHHHHHHHHHHH
Q 041899 223 FLTGQE------------------------------------------------------------EIETVEEILKERIR 242 (650)
Q Consensus 223 F~~~~~------------------------------------------------------------~i~~~~~~L~~~~~ 242 (650)
|+|.+. .++++++.|.+.
T Consensus 372 ~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~-- 449 (679)
T PRK05580 372 FLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL-- 449 (679)
T ss_pred EEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh--
Confidence 887532 345555555554
Q ss_pred hhcCCCCceEEEeecCCCC--HHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccccee
Q 041899 243 KLGTKIGELIVCPVYANLP--TELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLV 320 (650)
Q Consensus 243 ~~~~~~~~~~v~~lh~~l~--~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~ 320 (650)
.++..+..+|+++. .++++++++.|++|+.+|||+|++++.|+|+|+|+.|+... .|...+...+..
T Consensus 450 -----fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~------aD~~l~~pdfra 518 (679)
T PRK05580 450 -----FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD------ADLGLFSPDFRA 518 (679)
T ss_pred -----CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc------CchhccCCccch
Confidence 34678889999986 46788999999999999999999999999999999885311 122111111111
Q ss_pred eecCHHhHHhhccccCCCC-CcEEEE
Q 041899 321 YPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 321 ~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
.......+.|++||+||.+ +|.++.
T Consensus 519 ~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 519 SERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 1223577999999999966 687774
No 84
>PRK09694 helicase Cas3; Provisional
Probab=99.93 E-value=1.2e-24 Score=247.50 Aligned_cols=301 Identities=18% Similarity=0.177 Sum_probs=185.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHHH----hC-Ccc
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSRE----MG-VKL 82 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~~----~~-~~~ 82 (650)
...+++|+.+.+...+...+||.||||+|||..+..+..... .....++++..||+++++++++|+.+. ++ ..+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v 364 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPNL 364 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 346899998765545577899999999999965544333211 122358999999999999999999752 22 122
Q ss_pred CcEeeeee---cccc--------------------------cCCCCceEEEEChHHHHHHHhcCC--CCCCC----ceEE
Q 041899 83 GHEVGYSI---RFED--------------------------CTSEKTVLKYMTDGMVLREMLSDP--KLESY----SVLM 127 (650)
Q Consensus 83 g~~vg~~~---~~~~--------------------------~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~----~~iI 127 (650)
+...|... .+.. +..--+.++++|...++...+..+ .++.+ ++||
T Consensus 365 ~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvI 444 (878)
T PRK09694 365 ILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLI 444 (878)
T ss_pred EeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEE
Confidence 22222111 0000 000125899999988876555432 23333 5899
Q ss_pred ecccccCCcccc-HHHHHHHHHHhcCCCceEEEEccCCChHHHHhhh---CCC---------CccccCC----cc-----
Q 041899 128 VDEAHERTLSTD-ILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYF---NFA---------PILRVPG----RR----- 185 (650)
Q Consensus 128 iDE~Her~~~~d-~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~---~~~---------~~~~~~~----~~----- 185 (650)
|||+|-.+..+. ++..+++.+.. ...++|+||||++.....+++ +.. |.+...+ ..
T Consensus 445 iDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 445 VDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 999995444333 33334443322 456899999999755433322 221 1111000 00
Q ss_pred --------cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeec
Q 041899 186 --------YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVY 257 (650)
Q Consensus 186 --------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh 257 (650)
..+.+..............+..+.+.. ..++++||||||++.++++++.|++... ++..+..+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~------~~~~v~llH 594 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN------TQVDIDLFH 594 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC------CCceEEEEe
Confidence 011111111010011122223333322 3478999999999999999999986421 135688999
Q ss_pred CCCCHHHHh----hhcCCC-CCCC---cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHH
Q 041899 258 ANLPTELQA----KIFVPT-PDGA---RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAM 329 (650)
Q Consensus 258 ~~l~~~~r~----~i~~~~-~~g~---~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~ 329 (650)
|.++..+|. ++++.| ++|+ .+|||||+++|.|+||+ ++++|.. ..+.++++
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItd--------------------laPidsLi 653 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQ--------------------LCPVDLLF 653 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEEC--------------------CCCHHHHH
Confidence 999999994 456667 5665 47999999999999995 7887751 24468999
Q ss_pred hhccccCCCCC
Q 041899 330 QRAGRSGRTGP 340 (650)
Q Consensus 330 Qr~GRaGR~~~ 340 (650)
||+||+||.+.
T Consensus 654 QRaGR~~R~~~ 664 (878)
T PRK09694 654 QRLGRLHRHHR 664 (878)
T ss_pred HHHhccCCCCC
Confidence 99999999873
No 85
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.2e-24 Score=211.98 Aligned_cols=297 Identities=19% Similarity=0.241 Sum_probs=206.9
Q ss_pred chHHHHH----HHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhC-CccCcE
Q 041899 11 IYHYREQ----VLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMG-VKLGHE 85 (650)
Q Consensus 11 l~~~q~~----~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~-~~~g~~ 85 (650)
+.+.|+. +++.+.+.+..+|.|-||+|||..+-+.+... +..+++|.+..||...+.+++.|+.+.+. +.+...
T Consensus 98 Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~a-l~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 98 LSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQA-LNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred cChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHH-HhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 4455654 45567788999999999999996666655443 55688999999999999999999998775 433222
Q ss_pred eeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 86 VGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 86 vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
. .++..--.+.++++|...|+|. -..++++||||++-.....|..+.+.-.- ...+.-..|.||||+.
T Consensus 177 y-----g~S~~~fr~plvVaTtHQLlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~-ark~~g~~IylTATp~ 244 (441)
T COG4098 177 Y-----GDSDSYFRAPLVVATTHQLLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKK-ARKKEGATIYLTATPT 244 (441)
T ss_pred e-----cCCchhccccEEEEehHHHHHH------HhhccEEEEeccccccccCCHHHHHHHHH-hhcccCceEEEecCCh
Confidence 2 2333334588999999999883 34689999999997666666555543221 1334556899999986
Q ss_pred hHHHHhhhC-CCCccccCCccc----cee-EEEecCCC----CchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 166 AEKFSAYFN-FAPILRVPGRRY----PVE-IHYTKAPE----SNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 166 ~~~~~~~~~-~~~~~~~~~~~~----~v~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
.+.-.+... +...+.++.|-+ |+- ..|...-. .+.+...+...++.+.. .+.++|||+|+.+..++++.
T Consensus 245 k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~-~~~P~liF~p~I~~~eq~a~ 323 (441)
T COG4098 245 KKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRK-TGRPVLIFFPEIETMEQVAA 323 (441)
T ss_pred HHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHh-cCCcEEEEecchHHHHHHHH
Confidence 555555432 233455554432 222 22222111 11122234444444443 36799999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.|++.+ +...+..+||.- ..|.+..+.|++|+.++|++|.|+|+|+|+|+|+++|-. .
T Consensus 324 ~lk~~~-------~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg---------a---- 381 (441)
T COG4098 324 ALKKKL-------PKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG---------A---- 381 (441)
T ss_pred HHHhhC-------CccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEec---------C----
Confidence 997654 356677888874 457777889999999999999999999999999987631 1
Q ss_pred ccceeeecCHHhHHhhccccCCCC---CcEEEEe
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG---PGKCFRL 346 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l 346 (650)
...-.+.++.+|.+||+||.- .|..+.+
T Consensus 382 ---eh~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 382 ---EHRVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ---CcccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 222467899999999999976 3665444
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.93 E-value=1.1e-24 Score=234.91 Aligned_cols=292 Identities=19% Similarity=0.197 Sum_probs=198.9
Q ss_pred cCCCchHHHHHHHHHHHc----CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 7 KTLPIYHYREQVLRAVQE----NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
....+++||+++++++.+ ++..++++|||+|||.+...++... +.+++|++|+++|+.|.++++...++..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL----KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh----cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 455699999999999988 8999999999999998887777665 3359999999999999998887776653
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHH-HhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce-EEEE
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLRE-MLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK-LLIS 160 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~-l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k-ii~~ 160 (650)
..+|..-.......+ ..|+|+|.+.+.+. .+.....+++++||+||||..+.. ....+... ..... +++|
T Consensus 108 -~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~~~~~~~~----~~~~~~~LGL 179 (442)
T COG1061 108 -DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--SYRRILEL----LSAAYPRLGL 179 (442)
T ss_pred -cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--HHHHHHHh----hhcccceeee
Confidence 122211111111112 57999999999886 333334457999999999933322 22222322 22333 9999
Q ss_pred ccCC---ChH---HHHhhhCCCCccccC-------CcccceeEEEecCC--C---CchH---------------------
Q 041899 161 SATL---DAE---KFSAYFNFAPILRVP-------GRRYPVEIHYTKAP--E---SNYI--------------------- 201 (650)
Q Consensus 161 SAT~---~~~---~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~---~~~~--------------------- 201 (650)
|||+ |.. .+..++| ..+...+ |..-|......... . ..+.
T Consensus 180 TATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 180 TATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENE 258 (442)
T ss_pred ccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHH
Confidence 9997 322 3333333 1122211 22223332221110 0 0000
Q ss_pred --------HHHHHHHHHHHhcC-CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCC
Q 041899 202 --------DAAIVTTLEIHATQ-ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPT 272 (650)
Q Consensus 202 --------~~~~~~~~~~~~~~-~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~ 272 (650)
......+..+.... .+.+++||+.+..++..++..+... +. +..+.+..+..+|..+++.|
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~---------~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP---------GI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------Cc-eEEEECCCCHHHHHHHHHHH
Confidence 00011111111111 3679999999999999999888642 34 77889999999999999999
Q ss_pred CCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC
Q 041899 273 PDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP 340 (650)
Q Consensus 273 ~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~ 340 (650)
+.|.+++|+++.++..|+|+|+++++|. .....|...|.||+||.-|..+
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~------------------~~~t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLII------------------LRPTGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEE------------------eCCCCcHHHHHHHhhhhccCCC
Confidence 9999999999999999999999999997 4447899999999999999543
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=3.8e-25 Score=241.28 Aligned_cols=294 Identities=16% Similarity=0.191 Sum_probs=186.6
Q ss_pred EEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeeccc------ccCCCCceE
Q 041899 29 VIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFE------DCTSEKTVL 102 (650)
Q Consensus 29 ii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~------~~~~~~~~i 102 (650)
++.||||||||.....++.+. ...++++++++|+++|+.|+++++.+.++..+....+.....+ .......+|
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~I 79 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILV 79 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 478999999996665544433 4456789999999999999999998888765433322111000 112245789
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHH----HHHHHHHhcCCCceEEEEccCCChHHHHhhhCCC-C
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILL----GIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFA-P 177 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll----~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~-~ 177 (650)
+++|...+.. .+.++++|||||.|+-+...+-.. --+........+.++|++|||+..+.+.....+. .
T Consensus 80 VVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~g~~~ 153 (505)
T TIGR00595 80 VIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQKAYR 153 (505)
T ss_pred EECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhcCCeE
Confidence 9999886632 377899999999996443322110 0012222345688999999999988877654332 1
Q ss_pred ccccC----CcccceeEEEecCCCC---chH-HHHHHHHHHHHhcCCCCCEEEEeCCHHH--------------------
Q 041899 178 ILRVP----GRRYPVEIHYTKAPES---NYI-DAAIVTTLEIHATQASGDILVFLTGQEE-------------------- 229 (650)
Q Consensus 178 ~~~~~----~~~~~v~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~iLVF~~~~~~-------------------- 229 (650)
.+..+ +...| .+...+.... ..+ ...+..+.+.. ..++++|||+|++..
T Consensus 154 ~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~ 230 (505)
T TIGR00595 154 LLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDV 230 (505)
T ss_pred EeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCC
Confidence 22222 22222 2222221111 112 22222222222 236789999877653
Q ss_pred ----------------------------------------HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHH--hh
Q 041899 230 ----------------------------------------IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQ--AK 267 (650)
Q Consensus 230 ----------------------------------------i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r--~~ 267 (650)
++++.+.|.+. .++..+..+|++++..++ ++
T Consensus 231 ~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-------fp~~~v~~~d~d~~~~~~~~~~ 303 (505)
T TIGR00595 231 SLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-------FPGARIARIDSDTTSRKGAHEA 303 (505)
T ss_pred ceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-------CCCCcEEEEecccccCccHHHH
Confidence 46666666654 357889999999986655 78
Q ss_pred hcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEE
Q 041899 268 IFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 268 i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
+++.|++|+.+|||+|++++.|+|+|+|+.|+... +|...+...+.........+.|++|||||.+ +|.++.
T Consensus 304 ~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 304 LLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD------ADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred HHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc------CcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 99999999999999999999999999999875311 2222222211111234577899999999976 687773
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=6.2e-24 Score=235.10 Aligned_cols=312 Identities=21% Similarity=0.239 Sum_probs=192.9
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
.++.|-+++++.+++..+.-++..|+.++||+|||..+...++.... .+..++|+.|++.||.+.++.+...+ ..+|.
T Consensus 63 ~~R~lglrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL-~g~~V~VVTpn~yLA~Rdae~m~~l~-~~LGL 140 (762)
T TIGR03714 63 DKRVLGMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNAL-TGKGAMLVTTNDYLAKRDAEEMGPVY-EWLGL 140 (762)
T ss_pred HHhhcCCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhh-cCCceEEeCCCHHHHHHHHHHHHHHH-hhcCC
Confidence 45677889999999998776777899999999999444333333323 34579999999999999998775432 23444
Q ss_pred Eeeeeecc------c---ccCCCCceEEEEChHHH-HHHHh----c---CCCCCCCceEEeccccc------CCc-----
Q 041899 85 EVGYSIRF------E---DCTSEKTVLKYMTDGMV-LREML----S---DPKLESYSVLMVDEAHE------RTL----- 136 (650)
Q Consensus 85 ~vg~~~~~------~---~~~~~~~~i~~~T~~~L-l~~l~----~---~~~l~~~~~iIiDE~He------r~~----- 136 (650)
.+|..... . .......+|+|+||+.| ...+. . ...++++.++|+||||. |++
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 45533221 0 11124679999999988 33221 1 22478899999999992 110
Q ss_pred ----cccHHHHHHHHHHh-cCC--------CceEEEEccCCChHHHHhhhC-----------------------------
Q 041899 137 ----STDILLGIFKDLVR-LRS--------DLKLLISSATLDAEKFSAYFN----------------------------- 174 (650)
Q Consensus 137 ----~~d~ll~~l~~~~~-~~~--------~~kii~~SAT~~~~~~~~~~~----------------------------- 174 (650)
.+. +......+.. ..+ +-+-+.++-.- .+.+.++|+
T Consensus 221 ~~~~~~~-~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G-~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 221 APRVQSN-LYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKG-IEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred CCccchH-HHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhH-HHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 011 1111111111 111 12223332210 011111110
Q ss_pred ------CCCcccc--------CCccc------------------------------------------------------
Q 041899 175 ------FAPILRV--------PGRRY------------------------------------------------------ 186 (650)
Q Consensus 175 ------~~~~~~~--------~~~~~------------------------------------------------------ 186 (650)
+..++.+ +|+.+
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 0000000 01110
Q ss_pred --ceeEEEecCC---------------CCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCC
Q 041899 187 --PVEIHYTKAP---------------ESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIG 249 (650)
Q Consensus 187 --~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~ 249 (650)
.+.+...|.. ..+.....+..+.+.+ ..+.++||||++.+.++.++..|.+.
T Consensus 379 iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~--~~~~pvLIft~s~~~se~ls~~L~~~--------- 447 (762)
T TIGR03714 379 TYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH--ETGQPVLLITGSVEMSEIYSELLLRE--------- 447 (762)
T ss_pred HhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh--hCCCCEEEEECcHHHHHHHHHHHHHC---------
Confidence 0111111100 0112222333333333 34779999999999999999999875
Q ss_pred ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC---------CeEEEEeCCcccceeccCCCCccccee
Q 041899 250 ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID---------GIKYVVDSGYSKMKWYNPKTGMESLLV 320 (650)
Q Consensus 250 ~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip---------~v~~VId~G~~k~~~~d~~~~~~~l~~ 320 (650)
++....+||.+...++..+..+++.| +|+||||+|++|+||| ++.+|+. .+
T Consensus 448 gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit------------------~~ 507 (762)
T TIGR03714 448 GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT------------------ER 507 (762)
T ss_pred CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEe------------------cC
Confidence 77788899999999988888887776 7999999999999999 9999997 33
Q ss_pred eecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 321 YPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 321 ~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
.|..... .||+||+||.| +|.++.+++.++.
T Consensus 508 ~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 508 MENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred CCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 3555555 99999999999 8999999887553
No 89
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.93 E-value=1.4e-24 Score=232.11 Aligned_cols=303 Identities=18% Similarity=0.183 Sum_probs=217.5
Q ss_pred CCCchHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 8 TLPIYHYREQVLRAVQEN------QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
++.+...|+++++-|..+ -+=+++|.-|||||..+..+++.. ...+.++...+||-+||.|-++.+++.+. +
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~-~ 337 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLE-P 337 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhh-h
Confidence 344889999999888643 234899999999997777776665 55677899999999999999999987553 3
Q ss_pred cCcEeeeeeccc----------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc
Q 041899 82 LGHEVGYSIRFE----------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL 151 (650)
Q Consensus 82 ~g~~vg~~~~~~----------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 151 (650)
.|..|++-.... ...+...+|+++|...+ +.+-.+.+++++|+||=|..++... ..+...
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Qd~V~F~~LgLVIiDEQHRFGV~QR------~~L~~K 407 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----QDKVEFHNLGLVIIDEQHRFGVHQR------LALREK 407 (677)
T ss_pred cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----hcceeecceeEEEEeccccccHHHH------HHHHHh
Confidence 334444322211 12345689999998754 2344789999999999995554431 222234
Q ss_pred CC-CceEEEEccCCChHHH-HhhhCCCCc---cccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 041899 152 RS-DLKLLISSATLDAEKF-SAYFNFAPI---LRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTG 226 (650)
Q Consensus 152 ~~-~~kii~~SAT~~~~~~-~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~ 226 (650)
.. .+.++.||||+=+..+ -..|++-.+ -+.|.-.-|++....+....+.+ +..+..-.. .+.++-+.||-
T Consensus 408 G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v---~e~i~~ei~--~GrQaY~VcPL 482 (677)
T COG1200 408 GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEV---YERIREEIA--KGRQAYVVCPL 482 (677)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHH---HHHHHHHHH--cCCEEEEEecc
Confidence 44 5789999999955444 345565443 33444445888877775433322 222222222 47889999988
Q ss_pred HHHHH--------HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEE
Q 041899 227 QEEIE--------TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYV 298 (650)
Q Consensus 227 ~~~i~--------~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~V 298 (650)
.++.+ .+++.|.. ..++..+..+||.|++++++.+++.|++|+.+|||||.+.|.|||+|+.++.
T Consensus 483 IeESE~l~l~~a~~~~~~L~~-------~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvM 555 (677)
T COG1200 483 IEESEKLELQAAEELYEELKS-------FLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVM 555 (677)
T ss_pred ccccccchhhhHHHHHHHHHH-------HcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEE
Confidence 77665 33344442 3457889999999999999999999999999999999999999999999986
Q ss_pred EeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 299 VDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 299 Id~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
|. +|+ .....++..|-.||+||.+ ...|+.+|....
T Consensus 556 VI--------e~A---------ERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 556 VI--------ENA---------ERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EE--------ech---------hhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 64 222 2466789999999999988 789999987654
No 90
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=7.5e-25 Score=262.59 Aligned_cols=307 Identities=16% Similarity=0.129 Sum_probs=195.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHH-HHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc--CcE
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQ-IPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL--GHE 85 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~--g~~ 85 (650)
...++.|+++++.+.++++++++||||||||+. ++..+.. ..++.++++++|+++|+.|+++.+... +... +..
T Consensus 78 ~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~--~~~g~~aLVl~PTreLa~Qi~~~l~~l-~~~~~~~v~ 154 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL--ALKGKKCYIILPTTLLVKQTVEKIESF-CEKANLDVR 154 (1638)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH--HhcCCeEEEEECHHHHHHHHHHHHHHH-HhhcCCcee
Confidence 468899999999999999999999999999963 2222222 123558999999999999999998663 3222 222
Q ss_pred eeeeecccc----------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCC---cc-------ccHHHHHH
Q 041899 86 VGYSIRFED----------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERT---LS-------TDILLGIF 145 (650)
Q Consensus 86 vg~~~~~~~----------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~---~~-------~d~ll~~l 145 (650)
+.+.....+ ......+|+++||+.|.+.+.... ..++++|||||||... -+ .+|...+.
T Consensus 155 v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~ 233 (1638)
T PRK14701 155 LVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEII 233 (1638)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceeccccccccchhhhcCCChHHHH
Confidence 222111111 112347899999998877554322 2679999999999321 11 12222221
Q ss_pred H----HH---------------------H-hcCCCce-EEEEccCCCh-HHHHhhhCCCCccccCCcc---cceeEEEec
Q 041899 146 K----DL---------------------V-RLRSDLK-LLISSATLDA-EKFSAYFNFAPILRVPGRR---YPVEIHYTK 194 (650)
Q Consensus 146 ~----~~---------------------~-~~~~~~k-ii~~SAT~~~-~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 194 (650)
. .+ . ...+..+ ++++|||+++ .....++...-.+.+.... ..+...|..
T Consensus 234 ~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~ 313 (1638)
T PRK14701 234 EKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLN 313 (1638)
T ss_pred HHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEE
Confidence 1 10 0 1122334 5679999965 3444555432223332221 124444543
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHH---HHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCC
Q 041899 195 APESNYIDAAIVTTLEIHATQASGDILVFLTGQEE---IETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVP 271 (650)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~---i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~ 271 (650)
....+ .. .+..+.... +..+||||+++.. ++.+++.|.+. ++.+..+||+ |.++++.
T Consensus 314 ~~~~~-k~----~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~---------Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 314 PEKII-KE----HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED---------GFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred CCHHH-HH----HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC---------CCeEEEecch-----HHHHHHH
Confidence 32121 11 233333323 4678999999875 47888888764 7899999995 8889999
Q ss_pred CCCCCcEEEEeC----CCccccCcCCC-eEEEEeCCccccee----ccCCCCcccceeeecCHHhHHhhccccCCCC-Cc
Q 041899 272 TPDGARKVVLAT----NIAETSLTIDG-IKYVVDSGYSKMKW----YNPKTGMESLLVYPISKASAMQRAGRSGRTG-PG 341 (650)
Q Consensus 272 ~~~g~~kilvaT----~i~e~gidip~-v~~VId~G~~k~~~----~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G 341 (650)
|++|+.+||||| +++.+|||+|+ |+|||+.|..|... |...... ... .....++.|||||.| ++
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~ 447 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPI 447 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcc
Confidence 999999999999 59999999999 99999998876331 1111100 001 234567789999999 56
Q ss_pred EEEE
Q 041899 342 KCFR 345 (650)
Q Consensus 342 ~~~~ 345 (650)
.|+.
T Consensus 448 ~~~~ 451 (1638)
T PRK14701 448 EGVL 451 (1638)
T ss_pred hhHH
Confidence 6643
No 91
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=1.2e-24 Score=237.30 Aligned_cols=329 Identities=18% Similarity=0.240 Sum_probs=227.8
Q ss_pred hcCCCchHHHHHHHHH--HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 6 RKTLPIYHYREQVLRA--VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~--l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.+.+-+|.||.+.+.. ++++++.|..+||+.|||......++...+..+..++.+.|..+.+.+-...+.. +..++|
T Consensus 219 kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~-~~~~~G 297 (1008)
T KOG0950|consen 219 KGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSP-FSIDLG 297 (1008)
T ss_pred hhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhh-hccccC
Confidence 3445689999999854 7799999999999999998888887776666677899999999988887777654 344444
Q ss_pred cEe-eeeeccccc-CCCCceEEEEChH---HHHHHHhcCCCCCCCceEEecccc-----cCCccccHHHHHHHHHHhcCC
Q 041899 84 HEV-GYSIRFEDC-TSEKTVLKYMTDG---MVLREMLSDPKLESYSVLMVDEAH-----ERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 84 ~~v-g~~~~~~~~-~~~~~~i~~~T~~---~Ll~~l~~~~~l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~ 153 (650)
..| +|.-++... ......+.+||.+ ++.+.++....+..++.|||||.| +|+...+.++.-+... ....
T Consensus 298 ~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~-~~~~ 376 (1008)
T KOG0950|consen 298 FPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE-NLET 376 (1008)
T ss_pred CcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh-cccc
Confidence 433 233222222 2245678899987 466777777788889999999999 4555444433322221 1333
Q ss_pred CceEEEEccCC-ChHHHHhhhCCCCccccCCcccceeEEEecCCCC-ch-HHHHHHHHHH-----------------HHh
Q 041899 154 DLKLLISSATL-DAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPES-NY-IDAAIVTTLE-----------------IHA 213 (650)
Q Consensus 154 ~~kii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~-~~~~~~~~~~-----------------~~~ 213 (650)
.+++|+||||+ |.+.+++|++ +.+.....|+.|.+.+....+.- +. ....+..+.. ...
T Consensus 377 ~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~te 455 (1008)
T KOG0950|consen 377 SVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTE 455 (1008)
T ss_pred ceeEeeeecccCChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhh
Confidence 47899999999 8999999996 33333334443433332211100 00 0111111110 001
Q ss_pred cCC-CCCEEEEeCCHHHHHHHHHHHHHHHHhh-------c----------------------CCCCceEEEeecCCCCHH
Q 041899 214 TQA-SGDILVFLTGQEEIETVEEILKERIRKL-------G----------------------TKIGELIVCPVYANLPTE 263 (650)
Q Consensus 214 ~~~-~~~iLVF~~~~~~i~~~~~~L~~~~~~~-------~----------------------~~~~~~~v~~lh~~l~~~ 263 (650)
.-+ +.++|||||++..++.++..+....+.. + ...-...+..+|+|++.+
T Consensus 456 t~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~e 535 (1008)
T KOG0950|consen 456 TAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSE 535 (1008)
T ss_pred hhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccc
Confidence 112 3459999999999999998776554321 0 001134577789999999
Q ss_pred HHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---C
Q 041899 264 LQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---P 340 (650)
Q Consensus 264 ~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~ 340 (650)
+|+.+...|++|...|++||+++..|+|.|..+++|..-++ .....+..+|.||+|||||.| -
T Consensus 536 ER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~--------------g~~~l~~~~YkQM~GRAGR~gidT~ 601 (1008)
T KOG0950|consen 536 EREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYV--------------GREFLTRLEYKQMVGRAGRTGIDTL 601 (1008)
T ss_pred hHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcc--------------ccchhhhhhHHhhhhhhhhcccccC
Confidence 99999999999999999999999999999999999974332 334678899999999999998 5
Q ss_pred cEEEEeeCccc
Q 041899 341 GKCFRLYTINS 351 (650)
Q Consensus 341 G~~~~l~~~~~ 351 (650)
|.++.++.+.+
T Consensus 602 GdsiLI~k~~e 612 (1008)
T KOG0950|consen 602 GDSILIIKSSE 612 (1008)
T ss_pred cceEEEeeccc
Confidence 88999987765
No 92
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=3.3e-25 Score=220.98 Aligned_cols=307 Identities=21% Similarity=0.243 Sum_probs=219.9
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHHHhCCccCc----
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSREMGVKLGH---- 84 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~---- 84 (650)
.+.|++.++.+.++++++-.+-|||||| +.+|++..-.... .+-+.+++.|+|+|+.|..+-+ +++|.-.+.
T Consensus 45 tpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvv-kdlgrgt~lr~s~ 123 (529)
T KOG0337|consen 45 TPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVV-KDLGRGTKLRQSL 123 (529)
T ss_pred CchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHH-HHhccccchhhhh
Confidence 5678889999999999999999999999 7777765433222 3349999999999999998666 445543222
Q ss_pred Eeeeeeccc--ccCCCCceEEEEChHHHHHHHhcC-CCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 85 EVGYSIRFE--DCTSEKTVLKYMTDGMVLREMLSD-PKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 85 ~vg~~~~~~--~~~~~~~~i~~~T~~~Ll~~l~~~-~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+|+.--.+ .....+.+|+++|||.++.....- -.|+.+.+||+||++ |-....|...+-..+.+...+.+.++||
T Consensus 124 ~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllfS 202 (529)
T KOG0337|consen 124 LVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLFS 202 (529)
T ss_pred hcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEEe
Confidence 233222111 123457889999999887644332 368899999999999 6666656666656666677788999999
Q ss_pred cCCChH--HHHhhhCCCCcc-c--cCCcc-cceeEEEecCCCCchHHHHHHHHHHHHhc-CCCCCEEEEeCCHHHHHHHH
Q 041899 162 ATLDAE--KFSAYFNFAPIL-R--VPGRR-YPVEIHYTKAPESNYIDAAIVTTLEIHAT-QASGDILVFLTGQEEIETVE 234 (650)
Q Consensus 162 AT~~~~--~~~~~~~~~~~~-~--~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~~~~~~i~~~~ 234 (650)
||++.. .|++-=...|+. . ++.+. -.+++.|......+... .++.+... ..+.+++||+++..+++.+.
T Consensus 203 atlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~a----aLl~il~~~~~~~~t~vf~~tk~hve~~~ 278 (529)
T KOG0337|consen 203 ATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEA----ALLSILGGRIKDKQTIVFVATKHHVEYVR 278 (529)
T ss_pred ccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHH----HHHHHHhccccccceeEEecccchHHHHH
Confidence 999544 343321122221 1 11111 11222232222222222 22222221 12457999999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCC
Q 041899 235 EILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTG 314 (650)
Q Consensus 235 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~ 314 (650)
..|... ++....+||+|.++.|..-+..|..++..++|.|+++.+|+|||..+-||+
T Consensus 279 ~ll~~~---------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin-------------- 335 (529)
T KOG0337|consen 279 GLLRDF---------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN-------------- 335 (529)
T ss_pred HHHHhc---------CCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------------
Confidence 988875 677778899999999999999999999999999999999999999999999
Q ss_pred cccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 315 MESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 315 ~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|.+..-|.||.||+.|.| .|..|.+....+
T Consensus 336 ----yd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 336 ----YDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred ----ccCCCCCceEEEEecchhhccccceEEEEEeccc
Confidence 666888899999999999999 799999876543
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=3.6e-23 Score=242.01 Aligned_cols=315 Identities=19% Similarity=0.284 Sum_probs=199.5
Q ss_pred CCchHHHHHHHHHHH-----cCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 9 LPIYHYREQVLRAVQ-----ENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 9 lpl~~~q~~~l~~l~-----~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+.+++||.++++++. .++..+|++|||||||..+..++.... ....++|++++||++|+.|..+.+.. ++...
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~-~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKD-TKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHh-ccccc
Confidence 457899999998764 346799999999999955443333221 12235999999999999999988865 32222
Q ss_pred CcEee--eeec--ccccCCCCceEEEEChHHHHHHHhcC------CCCCCCceEEecccccCCccccH------------
Q 041899 83 GHEVG--YSIR--FEDCTSEKTVLKYMTDGMVLREMLSD------PKLESYSVLMVDEAHERTLSTDI------------ 140 (650)
Q Consensus 83 g~~vg--~~~~--~~~~~~~~~~i~~~T~~~Ll~~l~~~------~~l~~~~~iIiDE~Her~~~~d~------------ 140 (650)
+.... |.+. .+........|+++|.+.+.+.+... +.+..+++||||||| |+...|-
T Consensus 491 ~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 491 DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhccchh
Confidence 21110 1111 11122346899999999988765421 356789999999999 7642110
Q ss_pred --HHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCCcccc-------CCccc----ceeEE---------EecCC--
Q 041899 141 --LLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRV-------PGRRY----PVEIH---------YTKAP-- 196 (650)
Q Consensus 141 --ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~-------~~~~~----~v~~~---------~~~~~-- 196 (650)
.....+.++.. .+..+|+||||+... -.++||. |+... +|... |+.+. +....
T Consensus 570 ~~~~~~yr~iL~y-FdA~~IGLTATP~r~-t~~~FG~-pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 570 LDYVSKYRRVLDY-FDAVKIGLTATPALH-TTEIFGE-PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred hhHHHHHHHHHhh-cCccEEEEecCCccc-hhHHhCC-eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 12334444443 356789999999532 3456653 32211 11111 11111 00000
Q ss_pred ---------------CC--chHH--------------HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhc
Q 041899 197 ---------------ES--NYID--------------AAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLG 245 (650)
Q Consensus 197 ---------------~~--~~~~--------------~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~ 245 (650)
.. ++.. ..+..+.+......++++||||.+.++++.+++.|.+.+....
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 00 0000 0111122211222358999999999999999999987654332
Q ss_pred CCCCceEEEeecCCCCHHHHhhhcCCCCCCCc-EEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecC
Q 041899 246 TKIGELIVCPVYANLPTELQAKIFVPTPDGAR-KVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPIS 324 (650)
Q Consensus 246 ~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~-kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s 324 (650)
.......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.|.+||. ...+.|
T Consensus 727 ~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf------------------~rpvkS 786 (1123)
T PRK11448 727 GQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF------------------LRRVRS 786 (1123)
T ss_pred CCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEE------------------ecCCCC
Confidence 2222334566888875 45678899998876 79999999999999999999996 556789
Q ss_pred HHhHHhhccccCCCCC--cE-EEEeeC
Q 041899 325 KASAMQRAGRSGRTGP--GK-CFRLYT 348 (650)
Q Consensus 325 ~~~~~Qr~GRaGR~~~--G~-~~~l~~ 348 (650)
...|+||+||+.|..+ |+ .+.+++
T Consensus 787 ~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 787 RILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred HHHHHHHHhhhccCCccCCCceEEEEe
Confidence 9999999999999987 44 455554
No 94
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.5e-23 Score=229.60 Aligned_cols=106 Identities=25% Similarity=0.256 Sum_probs=90.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC---
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID--- 293 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip--- 293 (650)
+.++||||++.+.++.++..|.+. ++.+..+||..+..++..+...+ +..+|+||||++++|+||+
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~---------gi~~~~Lhg~~~~rE~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~ 541 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA---------GLPHQVLNAKQDAEEAAIVARAG--QRGRITVATNMAGRGTDIKLEP 541 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEeeCCcHHHHHHHHHHcC--CCCcEEEEccchhcccCcCCcc
Confidence 578999999999999999999875 78899999997666655554444 4456999999999999999
Q ss_pred CeE-----EEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 294 GIK-----YVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 294 ~v~-----~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
+|. +||+ ++.|.|...|.||+||+||.| +|.++.+++.++
T Consensus 542 ~V~~~GGLhVI~------------------~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 542 GVAARGGLHVIL------------------TERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhhcCCCEEEE------------------cCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 776 8998 555899999999999999999 899999998654
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=2.3e-23 Score=245.43 Aligned_cols=276 Identities=20% Similarity=0.208 Sum_probs=179.2
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHH-HHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc-
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQ-IPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH- 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~- 84 (650)
.....++.|+..++.+..+++++++||||||||+. +|..... ..++.++++++|+|+||.|+++.+.+.. ...|.
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l--~~~g~~vLIL~PTreLa~Qi~~~l~~l~-~~~~i~ 151 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFL--AKKGKRCYIILPTTLLVIQVAEKISSLA-EKAGVG 151 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEeCHHHHHHHHHHHHHHHH-HhcCCc
Confidence 45678999999999999999999999999999953 3332221 2235689999999999999998886643 22221
Q ss_pred --Eeeeeecc---c-------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCcc----ccHHHH-----
Q 041899 85 --EVGYSIRF---E-------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLS----TDILLG----- 143 (650)
Q Consensus 85 --~vg~~~~~---~-------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~----~d~ll~----- 143 (650)
.+|+.... . .......+|+++|++.|.+.+..-. .+++++|+||||. .+. .|.++.
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~-~L~~~k~vd~il~llGF~ 228 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDA-LLKASKNVDKLLKLLGFS 228 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHh-hhhccccHHHHHHHcCCC
Confidence 12211111 0 0112347899999999987654322 1899999999993 222 111111
Q ss_pred --HHHHH----------------------H-hcCCCc--eEEEEccCCChHHHH-hhhCCCCccccCCcc---cceeEEE
Q 041899 144 --IFKDL----------------------V-RLRSDL--KLLISSATLDAEKFS-AYFNFAPILRVPGRR---YPVEIHY 192 (650)
Q Consensus 144 --~l~~~----------------------~-~~~~~~--kii~~SAT~~~~~~~-~~~~~~~~~~~~~~~---~~v~~~~ 192 (650)
.+..+ . ....+. .++++|||..+.... .++...-.+.+.... ..+...|
T Consensus 229 ~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~ 308 (1171)
T TIGR01054 229 EELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVY 308 (1171)
T ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEE
Confidence 11110 0 112222 367789995332222 233221112222211 2345555
Q ss_pred ecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH---HHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhc
Q 041899 193 TKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ---EEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIF 269 (650)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~---~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~ 269 (650)
..... ... .+..+.... +.++||||++. +.++.+++.|.+. ++.+..+||+++. .++
T Consensus 309 ~~~~~--~~~----~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~---------g~~a~~lhg~~~~----~~l 368 (1171)
T TIGR01054 309 VEDED--LKE----TLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH---------GVKAVAYHATKPK----EDY 368 (1171)
T ss_pred Eeccc--HHH----HHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC---------CceEEEEeCCCCH----HHH
Confidence 43322 111 222222222 46789999998 9999999999765 7889999999973 678
Q ss_pred CCCCCCCcEEEEe----CCCccccCcCCC-eEEEEeCCccccee
Q 041899 270 VPTPDGARKVVLA----TNIAETSLTIDG-IKYVVDSGYSKMKW 308 (650)
Q Consensus 270 ~~~~~g~~kilva----T~i~e~gidip~-v~~VId~G~~k~~~ 308 (650)
+.|++|+.+|||| |+++++|||+|+ |++||++|..+.+.
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999999999 599999999999 89999999877653
No 96
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.91 E-value=4.2e-23 Score=202.81 Aligned_cols=297 Identities=19% Similarity=0.244 Sum_probs=207.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
.+|.|.+.+++...++++++..|||.||| +|+|..+. +|..+++.|...|.....-.+. .+|......-.-
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~plislmedqil~lk-qlgi~as~lnan 167 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLISLMEDQILQLK-QLGIDASMLNAN 167 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhHHHHHHHHHHHH-HhCcchhhccCc
Confidence 56778888999899999999999999999 77776653 4678999999999988776663 355432211110
Q ss_pred eec-----cc---ccCCCCceEEEEChHHHH------HHHhcCCCCCCCceEEeccccc-----CCccccH-HHHHHHHH
Q 041899 89 SIR-----FE---DCTSEKTVLKYMTDGMVL------REMLSDPKLESYSVLMVDEAHE-----RTLSTDI-LLGIFKDL 148 (650)
Q Consensus 89 ~~~-----~~---~~~~~~~~i~~~T~~~Ll------~~l~~~~~l~~~~~iIiDE~He-----r~~~~d~-ll~~l~~~ 148 (650)
... .+ ......-+++|.||+.+- ..+...-....+.+|-|||+|. .+...|+ .+++++
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk-- 245 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK-- 245 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH--
Confidence 000 00 112245689999998663 2332233466789999999993 3333343 344444
Q ss_pred HhcCCCceEEEEccCCChH---HHHhhhCCCCc------cccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCC
Q 041899 149 VRLRSDLKLLISSATLDAE---KFSAYFNFAPI------LRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGD 219 (650)
Q Consensus 149 ~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (650)
+..++..+|+++||.... +..+.++-... +..+.-. .++.-.+..+.+.++..... +.....+..
T Consensus 246 -rqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~--yev~qkp~n~dd~~edi~k~---i~~~f~gqs 319 (695)
T KOG0353|consen 246 -RQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLK--YEVRQKPGNEDDCIEDIAKL---IKGDFAGQS 319 (695)
T ss_pred -HhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCce--eEeeeCCCChHHHHHHHHHH---hccccCCCc
Confidence 477899999999998332 33333321111 1111111 22222333344444433222 222233556
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEE
Q 041899 220 ILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVV 299 (650)
Q Consensus 220 iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VI 299 (650)
.+|||-+++++++++..|+.. ++....+|+.|.++++.-+-+.+-.|++.|||||-..++|||-|+|++||
T Consensus 320 giiyc~sq~d~ekva~alkn~---------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 320 GIIYCFSQKDCEKVAKALKNH---------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred ceEEEeccccHHHHHHHHHhc---------CccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE
Confidence 799999999999999999876 78889999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeccCCCCcccceeeecCHHhHHh-------------------------------------------hccccC
Q 041899 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQ-------------------------------------------RAGRSG 336 (650)
Q Consensus 300 d~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Q-------------------------------------------r~GRaG 336 (650)
+ ...|.|..+|.| ..||||
T Consensus 391 h------------------hsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgrag 452 (695)
T KOG0353|consen 391 H------------------HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAG 452 (695)
T ss_pred e------------------cccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccc
Confidence 8 556889999999 789999
Q ss_pred CCC-CcEEEEeeCc
Q 041899 337 RTG-PGKCFRLYTI 349 (650)
Q Consensus 337 R~~-~G~~~~l~~~ 349 (650)
|.+ +..|+..|.-
T Consensus 453 rd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 453 RDDMKADCILYYGF 466 (695)
T ss_pred cCCCcccEEEEech
Confidence 998 6788877643
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=7.7e-23 Score=224.99 Aligned_cols=119 Identities=27% Similarity=0.277 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEe
Q 041899 203 AAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLA 282 (650)
Q Consensus 203 ~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilva 282 (650)
+.+..+...+. .+.++||||++.+.++.++..|.+. ++....+|+. ..+|+..+..++.+...|+||
T Consensus 393 ai~~~i~~~~~--~grpvLV~t~si~~se~ls~~L~~~---------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIA 459 (745)
T TIGR00963 393 AVVDEIKERHA--KGQPVLVGTTSVEKSELLSNLLKER---------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIA 459 (745)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHc---------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEE
Confidence 33344444443 4789999999999999999999875 6778889998 678888888899999999999
Q ss_pred CCCccccCcCCC-------eEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 283 TNIAETSLTIDG-------IKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 283 T~i~e~gidip~-------v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
||+|++|+||+. ..+||. ...|.|...+.||.||+||.| ||.+..+.+.++.
T Consensus 460 TnmAgRGtDI~l~~V~~~GGl~VI~------------------t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~ 519 (745)
T TIGR00963 460 TNMAGRGTDIKLEEVKELGGLYVIG------------------TERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDN 519 (745)
T ss_pred eccccCCcCCCccchhhcCCcEEEe------------------cCCCCcHHHHHHHhccccCCCCCcceEEEEeccHH
Confidence 999999999998 449998 455899999999999999999 8999888887653
No 98
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.91 E-value=1.5e-22 Score=227.92 Aligned_cols=299 Identities=19% Similarity=0.253 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHH----cCC--eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 11 IYHYREQVLRAVQ----ENQ--VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 11 l~~~q~~~l~~l~----~~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
-.+-|..+++.+. +++ +=+|||.-|-|||-++..+.... ...++.|.+++||-.||.|-++.+.+.|. ..+.
T Consensus 595 ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~-~fPV 672 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFA-GFPV 672 (1139)
T ss_pred CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH-hcCCCeEEEEcccHHhHHHHHHHHHHHhc-CCCe
Confidence 3455777777764 332 45999999999998887777665 34568999999999999999999987663 3344
Q ss_pred Eeeeeeccccc----------CCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCC
Q 041899 85 EVGYSIRFEDC----------TSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSD 154 (650)
Q Consensus 85 ~vg~~~~~~~~----------~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~ 154 (650)
.|+.--||.+. .....+|+++|...| ..+-.+++++++||||-|..++.. -.++...+.+
T Consensus 673 ~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~kdv~FkdLGLlIIDEEqRFGVk~------KEkLK~Lr~~ 742 (1139)
T COG1197 673 RIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----SKDVKFKDLGLLIIDEEQRFGVKH------KEKLKELRAN 742 (1139)
T ss_pred eEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----CCCcEEecCCeEEEechhhcCccH------HHHHHHHhcc
Confidence 55555555433 235678999997544 456689999999999999666554 2233346678
Q ss_pred ceEEEEccCCChHHHHh-hhCC--CCcc-ccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 041899 155 LKLLISSATLDAEKFSA-YFNF--APIL-RVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEI 230 (650)
Q Consensus 155 ~kii~~SAT~~~~~~~~-~~~~--~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i 230 (650)
+.++-||||+=+..+.- ..|- -.++ ..|...+||..+..+.... .+..++.. ++ ..+|++-...|..+++
T Consensus 743 VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~-~ireAI~R--El---~RgGQvfYv~NrV~~I 816 (1139)
T COG1197 743 VDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDL-LIREAILR--EL---LRGGQVFYVHNRVESI 816 (1139)
T ss_pred CcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecCChH-HHHHHHHH--HH---hcCCEEEEEecchhhH
Confidence 99999999995554433 2231 2233 3456678898877665432 22222111 11 3389999889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceecc
Q 041899 231 ETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYN 310 (650)
Q Consensus 231 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d 310 (650)
++++..|++.. |+.++...||.|+..+-+.++..|-+|+.+|||||.|.|+|||||+++.+|.-
T Consensus 817 e~~~~~L~~LV-------PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe--------- 880 (1139)
T COG1197 817 EKKAERLRELV-------PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE--------- 880 (1139)
T ss_pred HHHHHHHHHhC-------CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe---------
Confidence 99999999874 58889999999999999999999999999999999999999999999987741
Q ss_pred CCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 311 PKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 311 ~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
.......++..|..||+||.. .|.||.+|+...
T Consensus 881 --------~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 881 --------RADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred --------ccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 222466789999999999998 699999998654
No 99
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=6.4e-23 Score=229.32 Aligned_cols=108 Identities=25% Similarity=0.298 Sum_probs=96.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcC---
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTI--- 292 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidi--- 292 (650)
.+.++||||++.+.++.++..|.+. ++.+..+||.+...++..+...+..| +|+||||+|++|+||
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~---------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~ 495 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA---------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLG 495 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcc
Confidence 4789999999999999999999875 78889999999988888888777766 799999999999999
Q ss_pred CCeE-----EEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 293 DGIK-----YVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 293 p~v~-----~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
|+|. +||+ ++.|.|...|.||+||+||.| +|.++.+++.++.
T Consensus 496 ~~V~~~GGL~VI~------------------~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~ 543 (790)
T PRK09200 496 EGVHELGGLAVIG------------------TERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDD 543 (790)
T ss_pred cccccccCcEEEe------------------ccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHH
Confidence 7998 9998 556899999999999999999 8999999887553
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.85 E-value=6.3e-20 Score=210.37 Aligned_cols=302 Identities=17% Similarity=0.190 Sum_probs=191.6
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 9 LPIYHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.-+.+||..++..+.. ...+++.-+.|.|||.++-.++.+.... ..++++|++|. .|..|....+.+.++......
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~ 229 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLF 229 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEE
Confidence 4478999999877643 3468999999999997776665543222 23489999997 788898888877777543211
Q ss_pred eee---eecccc-cCCCCceEEEEChHHHHHH--HhcCCCCCCCceEEecccccCCc---cccHHHHHHHHHHhcCCCce
Q 041899 86 VGY---SIRFED-CTSEKTVLKYMTDGMVLRE--MLSDPKLESYSVLMVDEAHERTL---STDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 86 vg~---~~~~~~-~~~~~~~i~~~T~~~Ll~~--l~~~~~l~~~~~iIiDE~Her~~---~~d~ll~~l~~~~~~~~~~k 156 (650)
-+- ....+. ..-...++++++.+++.+. ....-.-..+++|||||||.-.. ...-....++.+.. ....
T Consensus 230 ~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~--~~~~ 307 (956)
T PRK04914 230 DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAE--VIPG 307 (956)
T ss_pred cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhh--ccCC
Confidence 110 000000 1113467899999987641 11111124689999999994211 11112333333322 2236
Q ss_pred EEEEccCCC---hHHHHhh---hC-----------------------------CCCccc---------cC----------
Q 041899 157 LLISSATLD---AEKFSAY---FN-----------------------------FAPILR---------VP---------- 182 (650)
Q Consensus 157 ii~~SAT~~---~~~~~~~---~~-----------------------------~~~~~~---------~~---------- 182 (650)
++++|||+- .+.+-.. +. +.+... .+
T Consensus 308 ~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~ 387 (956)
T PRK04914 308 VLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQA 387 (956)
T ss_pred EEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhh
Confidence 899999982 2211110 00 000000 00
Q ss_pred -------------------------Cc-----------ccceeEE---EecCCCCchHH---------------------
Q 041899 183 -------------------------GR-----------RYPVEIH---YTKAPESNYID--------------------- 202 (650)
Q Consensus 183 -------------------------~~-----------~~~v~~~---~~~~~~~~~~~--------------------- 202 (650)
++ .+|.... ....+ ..|..
T Consensus 388 ~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~-~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 388 ANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLP-EQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCC-HHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 00 0110000 00000 11111
Q ss_pred ------------HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcC
Q 041899 203 ------------AAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFV 270 (650)
Q Consensus 203 ------------~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~ 270 (650)
..+..+..+.....+.++||||+++..+..+++.|... .++.+..+||+|+..+|.++++
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--------~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--------EGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--------cCeeEEEEECCCCHHHHHHHHH
Confidence 01112333334444679999999999999999999643 2788999999999999999999
Q ss_pred CCCC--CCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC
Q 041899 271 PTPD--GARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP 340 (650)
Q Consensus 271 ~~~~--g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~ 340 (650)
.|++ |..+|+|||+++++|+|++.+++||+ ++.|.++..|.||+||+||.|.
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn------------------fDlP~nP~~~eQRIGR~~RiGQ 592 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFASHLVL------------------FDLPFNPDLLEQRIGRLDRIGQ 592 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCcccccEEEE------------------ecCCCCHHHHHHHhcccccCCC
Confidence 9987 46999999999999999999999998 6669999999999999999994
No 101
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.85 E-value=2.1e-20 Score=203.08 Aligned_cols=163 Identities=21% Similarity=0.187 Sum_probs=116.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHHHhCCcc---Cc
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSREMGVKL---GH 84 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~---g~ 84 (650)
+--..||.+.+..+..++.++|+|||.+|||++-+.++-... ....+.++++.|+++|+.|++..+...++.+. |.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 556789999999999999999999999999976655543321 12356899999999999999988877663321 11
Q ss_pred -EeeeeecccccCCCCceEEEEChHHHHHHHhcCC----CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 85 -EVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDP----KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 85 -~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~----~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
..|--.+..+...-+++|.|+-|+.+-..|.+.| +.+++.+||+||+|.-+..-|-+ +...+-....+++++
T Consensus 590 sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l---~~Eqll~li~CP~L~ 666 (1330)
T KOG0949|consen 590 SLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGL---LWEQLLLLIPCPFLV 666 (1330)
T ss_pred hhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccch---HHHHHHHhcCCCeeE
Confidence 1121112222233478999999998877777643 78999999999999544333221 111111224578999
Q ss_pred EccCC-ChHHHHhhhC
Q 041899 160 SSATL-DAEKFSAYFN 174 (650)
Q Consensus 160 ~SAT~-~~~~~~~~~~ 174 (650)
+|||+ |++.++.|++
T Consensus 667 LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 667 LSATIGNPNLFQKWLN 682 (1330)
T ss_pred EecccCCHHHHHHHHH
Confidence 99999 9999999986
No 102
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=6.5e-20 Score=209.45 Aligned_cols=305 Identities=20% Similarity=0.174 Sum_probs=180.7
Q ss_pred CchHHHHHHHHHHH---cCC-eEEEEcCCCChHHHHHHHHHHhcccC---CCCeEEEecchHHHHHHHHHHHHHHhCCc-
Q 041899 10 PIYHYREQVLRAVQ---ENQ-VVVIVGETGSGKTTQIPQYLHEAGYT---KHGKVGCTQPRRVAAISVAARVSREMGVK- 81 (650)
Q Consensus 10 pl~~~q~~~l~~l~---~~~-~vii~apTGsGKT~~ip~~l~~~~~~---~~~~ilv~~P~r~la~q~~~~v~~~~~~~- 81 (650)
+.+++|+.+++.+. ..+ .+++.||||+|||+....+.+..... ...+++++.|++.++.++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 46788888888764 345 89999999999996554443332122 35699999999999999999998755432
Q ss_pred -cCc-Eeeeeeccc-ccC----------CC-----CceEEEEChHHHHHHHhcCCCC-----CCCceEEecccccCCcc-
Q 041899 82 -LGH-EVGYSIRFE-DCT----------SE-----KTVLKYMTDGMVLREMLSDPKL-----ESYSVLMVDEAHERTLS- 137 (650)
Q Consensus 82 -~g~-~vg~~~~~~-~~~----------~~-----~~~i~~~T~~~Ll~~l~~~~~l-----~~~~~iIiDE~Her~~~- 137 (650)
.+. ..|...... ... .+ --.+.++|+-..+......... -..+++|+||+|-....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 122 122111000 000 00 0011222222222111111111 12478999999943333
Q ss_pred -ccHHHHHHHHHHhcCCCceEEEEccCCChH---HHHhhhCCCCccccCCcccceeEEE-ecCC-CCchHHHH--HHHHH
Q 041899 138 -TDILLGIFKDLVRLRSDLKLLISSATLDAE---KFSAYFNFAPILRVPGRRYPVEIHY-TKAP-ESNYIDAA--IVTTL 209 (650)
Q Consensus 138 -~d~ll~~l~~~~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~~~~~~~~--~~~~~ 209 (650)
..++++++..+ ..-+.++|+||||++.. .+.++++....+.......+....+ .... ..+..+.. .....
T Consensus 355 ~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 355 MLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred hHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 22333333332 33578999999999654 4444544322221110100000000 0000 01111110 01111
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCC----CCCCcEEEEeCCC
Q 041899 210 EIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPT----PDGARKVVLATNI 285 (650)
Q Consensus 210 ~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~----~~g~~kilvaT~i 285 (650)
.......+++++|.+||+..+.+++..|+.. ...+..+||.+...+|.+.++.. +.+.-.|+|||++
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~---------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEK---------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhc---------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 1222344789999999999999999999875 22689999999999998877632 4567889999999
Q ss_pred ccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEe
Q 041899 286 AETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRL 346 (650)
Q Consensus 286 ~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l 346 (650)
.|.|+|+. .+++| +.+.+..+.+||+||++|.| +|..|..
T Consensus 504 IEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 504 IEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred EEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 99999998 55555 34688899999999999999 4555554
No 103
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.82 E-value=2.7e-20 Score=163.17 Aligned_cols=101 Identities=46% Similarity=0.774 Sum_probs=80.6
Q ss_pred HHHHHHHHHhCCcccCC-------------cccHHHHHHHHHhcccccceEEccCCCEEEeecCCeEEECCCCCCCCCCC
Q 041899 526 DQLTCLVERVGIELTSS-------------LCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPK 592 (650)
Q Consensus 526 ~ql~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~va~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~ 592 (650)
+||.++|++.++...+. ..+.+.|+++||+|||+|||++++++.|+++.++..++|||+|++++.+|
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p 80 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP 80 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence 58888888887643221 14557899999999999999999889999998888999999999999999
Q ss_pred cEEEEeeeccCchhhehhccccCHHHHHhHcCcc
Q 041899 593 RWVIYHELVLTTKEYMRQVTELKPEWLFEIAPHY 626 (650)
Q Consensus 593 ~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~~~~ 626 (650)
+||+|+|++.|+|.||++||+|+|+||.+++|++
T Consensus 81 ~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 81 KWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 9999999999999999999999999999999985
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=6.8e-19 Score=195.71 Aligned_cols=107 Identities=27% Similarity=0.304 Sum_probs=95.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcC---
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTI--- 292 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidi--- 292 (650)
.+.++||||++...++.++..|.+. ++....+|+.+...++..+..++++|. |+||||+|++|.||
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~---------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~ 507 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA---------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLG 507 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCC
Confidence 4789999999999999999999875 677889999999888888888887776 99999999999999
Q ss_pred CCeE-----EEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 293 DGIK-----YVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 293 p~v~-----~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++|. +||. ...|.|...+.|+.||+||.| ||.+..+++.++
T Consensus 508 ~~V~~~GGLhVI~------------------te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 508 PGVKELGGLAVIG------------------TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred cchhhhCCcEEEe------------------eecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 4889 9998 556899999999999999999 899988887764
No 105
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.5e-18 Score=194.00 Aligned_cols=331 Identities=19% Similarity=0.150 Sum_probs=193.6
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
.|+.|-+++|-.+++-.+.=++--|..++||+|||..+.+.++...+ .+..+.++.|++.||.|.++.+...+ ..+|.
T Consensus 75 ~~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al-~G~~V~VvTpn~yLA~qd~e~m~~l~-~~lGL 152 (896)
T PRK13104 75 SLRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAI-SGRGVHIVTVNDYLAKRDSQWMKPIY-EFLGL 152 (896)
T ss_pred HHHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHh-cccCc
Confidence 35567777777777777554555699999999999554444443323 24569999999999999998886643 44566
Q ss_pred Eeeeeeccccc----CCCCceEEEEChHHH-HHHHhcCCC-------CCCCceEEeccccc------CCc---------c
Q 041899 85 EVGYSIRFEDC----TSEKTVLKYMTDGMV-LREMLSDPK-------LESYSVLMVDEAHE------RTL---------S 137 (650)
Q Consensus 85 ~vg~~~~~~~~----~~~~~~i~~~T~~~L-l~~l~~~~~-------l~~~~~iIiDE~He------r~~---------~ 137 (650)
.+|......+. ..-..+|+|+|++.| ...+..+.. .+.+.++||||||. |++ .
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~ 232 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAEDS 232 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCccc
Confidence 67654433221 123578999999999 666655422 26899999999991 211 1
Q ss_pred ccHHHHH---HHHHHhc-----------CCCceEEEEccCCChHHHHhhh------------------------------
Q 041899 138 TDILLGI---FKDLVRL-----------RSDLKLLISSATLDAEKFSAYF------------------------------ 173 (650)
Q Consensus 138 ~d~ll~~---l~~~~~~-----------~~~~kii~~SAT~~~~~~~~~~------------------------------ 173 (650)
++..... .+.+... ...-+-+.++-.- ...+.++|
T Consensus 233 ~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G-~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A 311 (896)
T PRK13104 233 SELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAG-HLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKA 311 (896)
T ss_pred hHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHH-HHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHH
Confidence 1222111 2222111 0122334444321 01111111
Q ss_pred ----C-C-------CCcccc--------CCcccce---------------------------------------------
Q 041899 174 ----N-F-------APILRV--------PGRRYPV--------------------------------------------- 188 (650)
Q Consensus 174 ----~-~-------~~~~~~--------~~~~~~v--------------------------------------------- 188 (650)
. + ..++.+ +|+.++-
T Consensus 312 ~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~t 391 (896)
T PRK13104 312 HAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADT 391 (896)
T ss_pred HHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChh
Confidence 0 0 011100 1111100
Q ss_pred -----------eEEEecC--C-------------CCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHH
Q 041899 189 -----------EIHYTKA--P-------------ESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIR 242 (650)
Q Consensus 189 -----------~~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~ 242 (650)
.+...+. | ..+...+.+..+...+. .+.++||||++.+..+.++..|.+.
T Consensus 392 e~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~-- 467 (896)
T PRK13104 392 EAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV--RKQPVLVGTVSIEASEFLSQLLKKE-- 467 (896)
T ss_pred HHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHc--
Confidence 0000000 0 00112233334444443 4789999999999999999999886
Q ss_pred hhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe---EE-EEeCCccc-------------
Q 041899 243 KLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI---KY-VVDSGYSK------------- 305 (650)
Q Consensus 243 ~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v---~~-VId~G~~k------------- 305 (650)
++....+|+.+...++..+.+++++|. |+||||+|++|+||.=- .+ +.+.-...
T Consensus 468 -------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (896)
T PRK13104 468 -------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQ 538 (896)
T ss_pred -------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhh
Confidence 788899999999999999999999994 99999999999998510 00 00000000
Q ss_pred --ceeccCCCCccccee-eecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 306 --MKWYNPKTGMESLLV-YPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 306 --~~~~d~~~~~~~l~~-~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
..---...|+..+.+ .+.|..-=.|-.|||||.| ||.+-.+.|-++
T Consensus 539 ~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 539 KRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 000000123322222 4566777789999999999 898777666554
No 106
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=8.8e-18 Score=187.68 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=89.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI 295 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v 295 (650)
.+.++||||++.+.++.+++.|.+. ++....+||. ..+|+..+..|+.+...|+||||+|++|+||+==
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~---------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~Lg 497 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKA---------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLG 497 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC---------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCC
Confidence 4779999999999999999999875 6778889996 6788888999999999999999999999999721
Q ss_pred ---EEEEeCCccc----------------ceeccCCCCccccee-eecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 296 ---KYVVDSGYSK----------------MKWYNPKTGMESLLV-YPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 296 ---~~VId~G~~k----------------~~~~d~~~~~~~l~~-~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
.+.....+.. ...--...|+..+.+ .+.|..-=.|-.|||||.| ||.+-.+.|-++
T Consensus 498 Gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 498 GNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 0000000000 000000123333333 3677777889999999999 898777766554
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.78 E-value=6.6e-18 Score=187.07 Aligned_cols=316 Identities=16% Similarity=0.199 Sum_probs=199.9
Q ss_pred CCCchHHHHHHHHHHHcC----CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 8 TLPIYHYREQVLRAVQEN----QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~----~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.+.+...|+.+++.+.+. ...++.|.||||||-....++.+. +..++.+++++|-.+|..|+.+|+...||.+++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~-L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~ 274 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKV-LAQGKQVLVLVPEIALTPQLLARFKARFGAKVA 274 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHH-HHcCCEEEEEeccccchHHHHHHHHHHhCCChh
Confidence 467889999999998765 789999999999997777766654 556789999999999999999999999998765
Q ss_pred cEeeee---ecc---cccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccH-HHHHHH---HHHhcCC
Q 041899 84 HEVGYS---IRF---EDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDI-LLGIFK---DLVRLRS 153 (650)
Q Consensus 84 ~~vg~~---~~~---~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~-ll~~l~---~~~~~~~ 153 (650)
.....- .+. ....+...+|+++|-.-+.- -++++++|||||-|+-+...+- ...-.+ ..+....
T Consensus 275 vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 275 VLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 533311 111 11234678899988654422 3789999999999954433211 001111 1122345
Q ss_pred CceEEEEccCCChHHHHhhhCC-CCccccCCccc---ceeEEEecCCCC----c--hHHHHHHHHHHHHhcCCCCCEEEE
Q 041899 154 DLKLLISSATLDAEKFSAYFNF-APILRVPGRRY---PVEIHYTKAPES----N--YIDAAIVTTLEIHATQASGDILVF 223 (650)
Q Consensus 154 ~~kii~~SAT~~~~~~~~~~~~-~~~~~~~~~~~---~v~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~iLVF 223 (650)
+.++|+-|||+..+.+.+-..+ -..+....|.. +..+...+.... + +-...+..+.+. . ..+.++|+|
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~-l-~~geQ~llf 426 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT-L-ERGEQVLLF 426 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH-H-hcCCeEEEE
Confidence 7899999999999988876443 12233332222 333333322111 1 111112221111 1 124555666
Q ss_pred eCCHH------------------------------------------------------------HHHHHHHHHHHHHHh
Q 041899 224 LTGQE------------------------------------------------------------EIETVEEILKERIRK 243 (650)
Q Consensus 224 ~~~~~------------------------------------------------------------~i~~~~~~L~~~~~~ 243 (650)
+|.+. -++++.+.|.+.+
T Consensus 427 lnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-- 504 (730)
T COG1198 427 LNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-- 504 (730)
T ss_pred EccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC--
Confidence 53333 2445555555543
Q ss_pred hcCCCCceEEEeecCCCCHH--HHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceee
Q 041899 244 LGTKIGELIVCPVYANLPTE--LQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVY 321 (650)
Q Consensus 244 ~~~~~~~~~v~~lh~~l~~~--~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~ 321 (650)
|+..+..+.++.... .-+..+..|.+|+.+|||.|.++..|.|+|+++.|.-.+ -|...+...+...
T Consensus 505 -----P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~------aD~~L~~~DfRA~ 573 (730)
T COG1198 505 -----PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD------ADTGLGSPDFRAS 573 (730)
T ss_pred -----CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe------chhhhcCCCcchH
Confidence 467777777766543 245678889999999999999999999999999875210 1222222222222
Q ss_pred ecCHHhHHhhccccCCCC-CcEEEE
Q 041899 322 PISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 322 ~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
.-...-+.|-+|||||.+ +|.++.
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvI 598 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVI 598 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEE
Confidence 344566789999999984 776554
No 108
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.78 E-value=1.7e-20 Score=201.81 Aligned_cols=437 Identities=10% Similarity=-0.124 Sum_probs=333.7
Q ss_pred HhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC----CCeEEEecchHHHHHHHHHHHHHHh
Q 041899 3 QKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK----HGKVGCTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 3 ~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~~~~v~~~~ 78 (650)
+..+.-+|...+-+.+++++.++.++++-+.||||||++.|+.+++....+ -+.++..+||++.|.....+..-+.
T Consensus 399 ~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fc 478 (1282)
T KOG0921|consen 399 KGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFC 478 (1282)
T ss_pred eecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeee
Confidence 345667899999999999999999999999999999999999999875443 2478999999999999988887777
Q ss_pred CCccCcEeeeeecccc-cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 79 GVKLGHEVGYSIRFED-CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 79 ~~~~g~~vg~~~~~~~-~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
++.++...+|..++.. ....+..+.++|++.|++.+..+ +....+.+.||.|++++++|++..+++.+ +++
T Consensus 479 tvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~ 550 (1282)
T KOG0921|consen 479 TVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDV 550 (1282)
T ss_pred ccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cce
Confidence 7777777777766653 34456677889999888877654 56778899999999999999999888753 456
Q ss_pred EEEccCCChHHHHhhhCCCCccccCCcccceeEEE------------------------e------------cCCCCchH
Q 041899 158 LISSATLDAEKFSAYFNFAPILRVPGRRYPVEIHY------------------------T------------KAPESNYI 201 (650)
Q Consensus 158 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~------------------------~------------~~~~~~~~ 201 (650)
.++++|.+...|-.++-.++...++++.++++.++ . ........
T Consensus 551 ~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~ 630 (1282)
T KOG0921|consen 551 TVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLI 630 (1282)
T ss_pred eeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHH
Confidence 99999999998888777777777777665543221 0 01124444
Q ss_pred HHHHHHHHH------HHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC
Q 041899 202 DAAIVTTLE------IHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG 275 (650)
Q Consensus 202 ~~~~~~~~~------~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g 275 (650)
++....+.. +..-.+++..|+|++++.-.......+.+.- -+. .....+.+.|......++..+++....+
T Consensus 631 Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~-ilp--~Hsq~~~~eqrkvf~~~p~gv~kii~st 707 (1282)
T KOG0921|consen 631 EALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYE-ILP--LHSQLTSQEQRKVFEPVPEGVTKIILST 707 (1282)
T ss_pred HHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcc-ccc--chhhcccHhhhhccCccccccccccccc
Confidence 443333222 2233568899999999998888877776531 111 1245677789999999999999999999
Q ss_pred CcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccc
Q 041899 276 ARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQED 355 (650)
Q Consensus 276 ~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 355 (650)
.++....|...++.|.+..+.+|++++..+.+.+.....++.....+.+.....||.|||+|...+.||.+++...+ ..
T Consensus 708 niaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t-~e 786 (1282)
T KOG0921|consen 708 NIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGT-AE 786 (1282)
T ss_pred ceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCc-Hh
Confidence 99999999999999999999999999999999888877777667778888889999999999999999999998887 46
Q ss_pred cCCCCCccccccChhHHHHHHHhcCCCCCCCC--CCCCCChHHHHHHHHHHHHHcCCCCCCCC--ccHHHHHhccCCCCh
Q 041899 356 MEDNTVPEIQRTNLANVILILKNLGIDDLLNF--DFLDSPPQELLRKALELLYALGALNQVGE--LTKVGRQMAEFPLDP 431 (650)
Q Consensus 356 ~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~--~~~~~p~~~~i~~a~~~L~~~g~l~~~~~--lT~lG~~~~~~p~~p 431 (650)
|..+..+||.++.....++.++.+-...+..+ +.+.+|+.... ....|...+.+...|+ +|++++.....|+.|
T Consensus 787 m~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~--~m~~ld~n~elt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 787 MFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLR--EMGALDANDELTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred hhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHH--HhhhhhccCcccchhhhhhhccCcccccceeee
Confidence 99999999999988777776665543334433 44555555444 3444444444444454 799999999999999
Q ss_pred HHHHHHHhhccccChHHHHHHH
Q 041899 432 MLSKMIVASDKFKCSNEIITIA 453 (650)
Q Consensus 432 ~~~~~l~~~~~~~c~~~~l~i~ 453 (650)
..+++....+.+-..+-..+++
T Consensus 865 g~~~g~~~~m~~~as~~s~~~~ 886 (1282)
T KOG0921|consen 865 GTALGAGSVMCDVASAMSFPTP 886 (1282)
T ss_pred chhhccchhhhhhhcccccccc
Confidence 9999988776654444444443
No 109
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=3.2e-18 Score=160.51 Aligned_cols=275 Identities=16% Similarity=0.187 Sum_probs=171.1
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCC--eEEEecchHHHHHHHHHHHHH---HhC-CccCc
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHG--KVGCTQPRRVAAISVAARVSR---EMG-VKLGH 84 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~--~ilv~~P~r~la~q~~~~v~~---~~~-~~~g~ 84 (650)
..+.|.++++...-+-+++.+|..|-|||..+.+.-+.....-.| .++|+..+|+||-|+.+...+ .+. .++..
T Consensus 65 psevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaV 144 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSV 144 (387)
T ss_pred chHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEE
Confidence 356788888887778889999999999995554444443222233 789999999999999765544 331 12111
Q ss_pred Ee-eeeecccc-cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 85 EV-GYSIRFED-CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 85 ~v-g~~~~~~~-~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.. |..+.-+. ....-.+|+++|||.++....+.. .++++.+.|+|||+..--..|.....-........+.++..+|
T Consensus 145 FfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfs 224 (387)
T KOG0329|consen 145 FFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 224 (387)
T ss_pred EEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeee
Confidence 11 12222221 112357899999999998877655 7999999999999932222222222222222244567899999
Q ss_pred cCCCh--HHHHhhhCCCC-ccccCCc----ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 041899 162 ATLDA--EKFSAYFNFAP-ILRVPGR----RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVE 234 (650)
Q Consensus 162 AT~~~--~~~~~~~~~~~-~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~ 234 (650)
||++. ..+..-|...| .+.++.. .+....+|..-.+.+... .+.++....+-.+++||+.+...+.
T Consensus 225 atlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr----kl~dLLd~LeFNQVvIFvKsv~Rl~--- 297 (387)
T KOG0329|consen 225 ATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR----KLNDLLDVLEFNQVVIFVKSVQRLS--- 297 (387)
T ss_pred eecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh----hhhhhhhhhhhcceeEeeehhhhhh---
Confidence 99943 34443332222 1222211 112233333322211111 1122222233467888877654300
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCC
Q 041899 235 EILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTG 314 (650)
Q Consensus 235 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~ 314 (650)
| ..+ +|||++..+|+||..|+.|++
T Consensus 298 -------------------------------------f---~kr-~vat~lfgrgmdiervNi~~N-------------- 322 (387)
T KOG0329|consen 298 -------------------------------------F---QKR-LVATDLFGRGMDIERVNIVFN-------------- 322 (387)
T ss_pred -------------------------------------h---hhh-hHHhhhhccccCcccceeeec--------------
Confidence 1 123 899999999999999999999
Q ss_pred cccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 315 MESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 315 ~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
++.|-+..+|.+|.|||||.| .|..+.+.+.+.
T Consensus 323 ----Ydmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 323 ----YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred ----cCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 566899999999999999999 588888876554
No 110
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.75 E-value=1.5e-17 Score=156.81 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeee
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSI 90 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~ 90 (650)
.++|.++++.+.+++++++.||||+|||+.+..+++...... ..++++++|+++++.|+++++...++. .+..+....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-ccccccccc
Confidence 378999999999999999999999999988877776654333 349999999999999999999776654 211222111
Q ss_pred ccc-------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCcc--ccHHHHHHHHHHhcCCCceEEEE
Q 041899 91 RFE-------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLS--TDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 91 ~~~-------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~--~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
... ........|+++|++.+.+.+.... .+.++++||+||+|..... .+.+..+++. ....++.++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~i~~ 158 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQIILL 158 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcEEEE
Confidence 111 1112468999999999999887632 5666999999999954432 1222222222 222346899999
Q ss_pred ccCCChHHHH
Q 041899 161 SATLDAEKFS 170 (650)
Q Consensus 161 SAT~~~~~~~ 170 (650)
|||+. ..+.
T Consensus 159 SAT~~-~~~~ 167 (169)
T PF00270_consen 159 SATLP-SNVE 167 (169)
T ss_dssp ESSST-HHHH
T ss_pred eeCCC-hhHh
Confidence 99997 5544
No 111
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=2.5e-17 Score=170.23 Aligned_cols=275 Identities=24% Similarity=0.302 Sum_probs=180.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
..+.++-+|||.||||+-+.+-+.+. ++-++.-|.|.||.++++|+ .+.|.++....|-..++.......++.+
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a-----ksGvycGPLrLLA~EV~~r~-na~gipCdL~TGeE~~~~~~~~~~a~hv 263 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA-----KSGVYCGPLRLLAHEVYDRL-NALGIPCDLLTGEERRFVLDNGNPAQHV 263 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh-----ccceecchHHHHHHHHHHHh-hhcCCCccccccceeeecCCCCCcccce
Confidence 45668889999999998877766553 35688899999999999999 4578888888887766665555567777
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccc-----cCCcc-ccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAH-----ERTLS-TDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAP 177 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~H-----er~~~-~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~ 177 (650)
-||-+|.- .-..|++.||||++ .|++. +..++++..+-...+.+ -|-+ +.+.+
T Consensus 264 ScTVEM~s-------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe------psvl--dlV~~------ 322 (700)
T KOG0953|consen 264 SCTVEMVS-------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE------PSVL--DLVRK------ 322 (700)
T ss_pred EEEEEEee-------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC------chHH--HHHHH------
Confidence 88887652 24568999999999 34422 34445544432222221 1111 11111
Q ss_pred ccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEE-EEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 041899 178 ILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDIL-VFLTGQEEIETVEEILKERIRKLGTKIGELIVCPV 256 (650)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL-VF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 256 (650)
+....|.. +++++...-..-.+.+ ..+.-..+-.+|+++ .| ++++|..+...+++.. +..+..+
T Consensus 323 i~k~TGd~--vev~~YeRl~pL~v~~---~~~~sl~nlk~GDCvV~F--Skk~I~~~k~kIE~~g--------~~k~aVI 387 (700)
T KOG0953|consen 323 ILKMTGDD--VEVREYERLSPLVVEE---TALGSLSNLKPGDCVVAF--SKKDIFTVKKKIEKAG--------NHKCAVI 387 (700)
T ss_pred HHhhcCCe--eEEEeecccCcceehh---hhhhhhccCCCCCeEEEe--ehhhHHHHHHHHHHhc--------CcceEEE
Confidence 12223333 3333322211111111 222222233345554 44 6889999999998862 4558889
Q ss_pred cCCCCHHHHhhhcCCCC--CCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccc
Q 041899 257 YANLPTELQAKIFVPTP--DGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGR 334 (650)
Q Consensus 257 h~~l~~~~r~~i~~~~~--~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GR 334 (650)
||+||++.|..--..|. +++.+|+|||++.++|+|+. |+-||=+-+ ..|+.+ ...+++.++..|-+||
T Consensus 388 YGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl---~Kysg~------e~~~it~sqikQIAGR 457 (700)
T KOG0953|consen 388 YGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSL---IKYSGR------ETEDITVSQIKQIAGR 457 (700)
T ss_pred ecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeec---ccCCcc------cceeccHHHHHHHhhc
Confidence 99999998766555565 48899999999999999998 666664333 223322 5568999999999999
Q ss_pred cCCCC----CcEEEEeeCcc
Q 041899 335 SGRTG----PGKCFRLYTIN 350 (650)
Q Consensus 335 aGR~~----~G~~~~l~~~~ 350 (650)
|||.| .|.+-.++.++
T Consensus 458 AGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 458 AGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ccccccCCcCceEEEeeHhh
Confidence 99998 57787777654
No 112
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.74 E-value=2.6e-16 Score=171.02 Aligned_cols=338 Identities=16% Similarity=0.164 Sum_probs=195.5
Q ss_pred CCchHHHHHHHHHH----H-cCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 9 LPIYHYREQVLRAV----Q-ENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 9 lpl~~~q~~~l~~l----~-~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
.-.+.||..++..+ . .++.+++++.||+|||..+.+++.... ...-++|++++-|++|+.|.+..+...+-.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-- 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-- 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC--
Confidence 34578888887664 3 345699999999999954444443321 112359999999999999999877664421
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcC-C-----CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSD-P-----KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~-~-----~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 156 (650)
|..+. .-.+......++|.++|...+....... . ....+++||||||| |++..+.- +++..+- .-
T Consensus 242 ~~~~n--~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFd-----A~ 312 (875)
T COG4096 242 GTKMN--KIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFD-----AA 312 (875)
T ss_pred cccee--eeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHH-----HH
Confidence 21111 1112222336799999999887766544 1 24558999999999 88766442 2222221 12
Q ss_pred EEEEccCCCh-H--HHHhhhCCCCcc------------ccCCcccceeEEEec-------C-------------CCCc--
Q 041899 157 LLISSATLDA-E--KFSAYFNFAPIL------------RVPGRRYPVEIHYTK-------A-------------PESN-- 199 (650)
Q Consensus 157 ii~~SAT~~~-~--~~~~~~~~~~~~------------~~~~~~~~v~~~~~~-------~-------------~~~~-- 199 (650)
.++++||+.. . .=..||++.|+. .++.+...+...+.. . ...+
T Consensus 313 ~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~ 392 (875)
T COG4096 313 TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFE 392 (875)
T ss_pred HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccccccc
Confidence 3555999832 1 223466443332 122222222211110 0 0000
Q ss_pred ------------hHHHHHHHHHHHHhc---C-CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHH
Q 041899 200 ------------YIDAAIVTTLEIHAT---Q-ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTE 263 (650)
Q Consensus 200 ------------~~~~~~~~~~~~~~~---~-~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 263 (650)
..+.....+.+.... . ..+++||||.+..+++.+...|.+..++.+ +-.+..+.+.-...
T Consensus 393 ~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~----~~~a~~IT~d~~~~ 468 (875)
T COG4096 393 ARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN----GRYAMKITGDAEQA 468 (875)
T ss_pred ccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc----CceEEEEeccchhh
Confidence 011111222222222 1 147899999999999999999998765522 23344455554332
Q ss_pred HHhhhcCCC-CCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC--
Q 041899 264 LQAKIFVPT-PDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP-- 340 (650)
Q Consensus 264 ~r~~i~~~~-~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~-- 340 (650)
|..+-.-+ ++.-.+|.++.+++.+|||+|.|..+|= ...-.|+.-|.||.||+-|..+
T Consensus 469 -q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF------------------~r~VrSktkF~QMvGRGTRl~~~~ 529 (875)
T COG4096 469 -QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF------------------DRKVRSKTKFKQMVGRGTRLCPDL 529 (875)
T ss_pred -HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee------------------hhhhhhHHHHHHHhcCccccCccc
Confidence 33332211 3445789999999999999999988773 2334789999999999999873
Q ss_pred c-----E-EEEeeCc---cccccccCCCCCccccccChhHHHHHHHhcCC
Q 041899 341 G-----K-CFRLYTI---NSYQEDMEDNTVPEIQRTNLANVILILKNLGI 381 (650)
Q Consensus 341 G-----~-~~~l~~~---~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~ 381 (650)
| + .|.++.- -.|. .+.+...+.-.+..+..-++.-...+.
T Consensus 530 ~~~~~dK~~F~ifDf~~~~~~~-~~~~~~~e~~~~~~l~~rLF~~~~~~~ 578 (875)
T COG4096 530 GGPEQDKEFFTIFDFVDNTEYF-EMDPEMREGRVRVSLEQRLFADRLFDL 578 (875)
T ss_pred cCccccceeEEEEEhhhhhhhh-ccCcccccccccchHHHHHhhhhhccC
Confidence 2 2 3444321 1121 234444455555566555544444333
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.74 E-value=1.9e-16 Score=179.25 Aligned_cols=299 Identities=14% Similarity=0.096 Sum_probs=171.1
Q ss_pred hHHHHHHHHHH----Hc------CCeEEEEcCCCChHHHHHHHHHHhc-ccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 12 YHYREQVLRAV----QE------NQVVVIVGETGSGKTTQIPQYLHEA-GYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 12 ~~~q~~~l~~l----~~------~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
..+|.++++.+ .+ .+..+|..|||||||..+..++... ......+|++++||+.|..|..+.+......
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~ 319 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKD 319 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCC
Confidence 45666666654 32 3579999999999995443333221 1223468999999999999999988664321
Q ss_pred ccCcEeeeeecccc-cCCCCceEEEEChHHHHHHHhcC--C-CCCC-CceEEecccccCCccccHHHHHHHHHHhcCCCc
Q 041899 81 KLGHEVGYSIRFED-CTSEKTVLKYMTDGMVLREMLSD--P-KLES-YSVLMVDEAHERTLSTDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 81 ~~g~~vg~~~~~~~-~~~~~~~i~~~T~~~Ll~~l~~~--~-~l~~-~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 155 (650)
.+ ..++..-.... .......|+++|.+.+.+.+... + .... -.+||+|||| |+....+. +.+....++.
T Consensus 320 ~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~----~~l~~~~p~a 393 (667)
T TIGR00348 320 CA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELA----KNLKKALKNA 393 (667)
T ss_pred CC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHH----HHHHhhCCCC
Confidence 11 11110000001 12234689999999987643221 1 1111 1389999999 76654432 2222345778
Q ss_pred eEEEEccCCCh----HHHHhhhC---CCCcccc-------CCcccceeEEEecCCCC-----c-----------------
Q 041899 156 KLLISSATLDA----EKFSAYFN---FAPILRV-------PGRRYPVEIHYTKAPES-----N----------------- 199 (650)
Q Consensus 156 kii~~SAT~~~----~~~~~~~~---~~~~~~~-------~~~~~~v~~~~~~~~~~-----~----------------- 199 (650)
..+++|||+-. ..+ ..|+ +.++... +|-..| +.|...... +
T Consensus 394 ~~lGfTaTP~~~~d~~t~-~~f~~~fg~~i~~Y~~~~AI~dG~~~~--i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 470 (667)
T TIGR00348 394 SFFGFTGTPIFKKDRDTS-LTFAYVFGRYLHRYFITDAIRDGLTVK--IDYEDRLPEDHLDRKKLDAFFDEIFELLPERI 470 (667)
T ss_pred cEEEEeCCCccccccccc-ccccCCCCCeEEEeeHHHHhhcCCeee--EEEEecchhhccChHHHHHHHHHHHHhhhccc
Confidence 99999999921 222 2222 1111111 232222 233221110 0
Q ss_pred --h---------------------HHHHHHHHHHHH---hcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEE
Q 041899 200 --Y---------------------IDAAIVTTLEIH---ATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIV 253 (650)
Q Consensus 200 --~---------------------~~~~~~~~~~~~---~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v 253 (650)
. +......+.+-. ....+++.+|||.++..+..+++.|.+..+... +...
T Consensus 471 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~----~~~~ 546 (667)
T TIGR00348 471 REITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKF----EASA 546 (667)
T ss_pred cHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccccc----CCee
Confidence 0 000001111111 111248999999999999999998877543210 1223
Q ss_pred EeecCCCCHH---------------------HHhhhcCCCCC-CCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 254 CPVYANLPTE---------------------LQAKIFVPTPD-GARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 254 ~~lh~~l~~~---------------------~r~~i~~~~~~-g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
..++++.+.+ ....+.+.|++ +..+|+|.++.+.+|+|.|.+.+++
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy------------ 614 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY------------ 614 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE------------
Confidence 3344432221 12356666754 6789999999999999999999887
Q ss_pred CCCcccceeeecCHHhHHhhccccCCC-CCcE
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRT-GPGK 342 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~-~~G~ 342 (650)
.+.|..-..++|.+||+-|. .+|+
T Consensus 615 -------ldKplk~h~LlQai~R~nR~~~~~K 639 (667)
T TIGR00348 615 -------LDKPLKYHGLLQAIARTNRIDGKDK 639 (667)
T ss_pred -------EeccccccHHHHHHHHhccccCCCC
Confidence 33455556789999999994 5544
No 114
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.73 E-value=1.4e-17 Score=166.80 Aligned_cols=269 Identities=16% Similarity=0.213 Sum_probs=178.8
Q ss_pred CCeEEEecchHHHHHHHHHHHHHHhCCcc-----C--cEee-eeeccc-ccCCCCceEEEEChHHHHHHHhcCC-CCCCC
Q 041899 54 HGKVGCTQPRRVAAISVAARVSREMGVKL-----G--HEVG-YSIRFE-DCTSEKTVLKYMTDGMVLREMLSDP-KLESY 123 (650)
Q Consensus 54 ~~~ilv~~P~r~la~q~~~~v~~~~~~~~-----g--~~vg-~~~~~~-~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~ 123 (650)
....+++.|.|+|+.|....+.+ |.... . ..+| ...+.. ....+.++|++.|++.+++.+.... .+.+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeee
Confidence 34889999999999999987744 32111 1 1112 111111 2234678999999999998776544 67889
Q ss_pred ceEEecccccC-C-ccccHHHHHHHHHHhc---CCCceEEEEccCC---ChHHHHhhhCCCCc-cccCCc-ccceeEEEe
Q 041899 124 SVLMVDEAHER-T-LSTDILLGIFKDLVRL---RSDLKLLISSATL---DAEKFSAYFNFAPI-LRVPGR-RYPVEIHYT 193 (650)
Q Consensus 124 ~~iIiDE~Her-~-~~~d~ll~~l~~~~~~---~~~~kii~~SAT~---~~~~~~~~~~~~~~-~~~~~~-~~~v~~~~~ 193 (650)
.++|+||++-. + .++|++..+...+... ...++.++.|||+ +...+.+-+..-|. +...|. ..|-+++..
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999921 1 2345554444444332 2458899999998 44455432211110 001000 001111000
Q ss_pred c----------------------CCC----------CchHHHHHHH-----HHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 041899 194 K----------------------APE----------SNYIDAAIVT-----TLEIHATQASGDILVFLTGQEEIETVEEI 236 (650)
Q Consensus 194 ~----------------------~~~----------~~~~~~~~~~-----~~~~~~~~~~~~iLVF~~~~~~i~~~~~~ 236 (650)
. .+. .+...++... .+.........+.+|||.++.++..+.++
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~ 524 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERM 524 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHH
Confidence 0 000 0111111111 01111223457899999999999999998
Q ss_pred HHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcc
Q 041899 237 LKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGME 316 (650)
Q Consensus 237 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~ 316 (650)
+.+.. ...+.++.+|++..+++|+.-++.|+.+..+.++||+++++|+||.++-++|+
T Consensus 525 ~~qkg------g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in---------------- 582 (725)
T KOG0349|consen 525 MNQKG------GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN---------------- 582 (725)
T ss_pred HHHcC------CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE----------------
Confidence 88752 13688999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCHHhHHhhccccCCCC-CcEEEEee
Q 041899 317 SLLVYPISKASAMQRAGRSGRTG-PGKCFRLY 347 (650)
Q Consensus 317 ~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~ 347 (650)
.+.|-.+.+|.||+||+||.. -|..+.|.
T Consensus 583 --vtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 583 --VTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred --EecCcccchhhhhhhccchhhhcceeEEEe
Confidence 777999999999999999987 58887775
No 115
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.73 E-value=1e-17 Score=142.89 Aligned_cols=92 Identities=49% Similarity=0.808 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHHHH--HHH
Q 041899 400 KALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFLAD--NAR 477 (650)
Q Consensus 400 ~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~--~~~ 477 (650)
+|++.|+.+||||++|+||++|+.|++||++|++||||+.|..++|.+++++|||+|++ +++|..|.+++...+ ..+
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~-~~~f~~~~~~~~~~~~~~~~ 79 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSV-RSPFINPDDKEENAEQDNAK 79 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTS-S--B---CCGHHHHHH--HH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcC-CCcccCccHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999 889998765443332 244
Q ss_pred hcc--------cCCCCCCHHHHH
Q 041899 478 MNF--------YQGDAGDHIALL 492 (650)
Q Consensus 478 ~~~--------~~~~~sD~~~~l 492 (650)
.+| ..+..|||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 80 KKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HTT----------BTTBHHHHHH
T ss_pred HHhhhhhcccccCCCCCCHHhcC
Confidence 444 223579999986
No 116
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.72 E-value=1.3e-15 Score=170.45 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=99.7
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI 295 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v 295 (650)
.+.++|||++++..++.+++.|.+. ++.+..+||+++..+|.++++.|++|+..|+|||+++++|+|+|++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~---------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v 511 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL---------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEV 511 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh---------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCC
Confidence 4678999999999999999999875 6778889999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccc
Q 041899 296 KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINS 351 (650)
Q Consensus 296 ~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 351 (650)
++||.+ |.. ....|.+..+|+||+|||||..+|.++.+.+..+
T Consensus 512 ~lVvi~--------Dad-----ifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~ 554 (655)
T TIGR00631 512 SLVAIL--------DAD-----KEGFLRSERSLIQTIGRAARNVNGKVIMYADKIT 554 (655)
T ss_pred cEEEEe--------Ccc-----cccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCC
Confidence 999873 211 1224778899999999999999999988877543
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.6e-16 Score=174.42 Aligned_cols=135 Identities=19% Similarity=0.162 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEe
Q 041899 203 AAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLA 282 (650)
Q Consensus 203 ~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilva 282 (650)
+.+..+...+. .+.++||||.+.+..+.++..|.+. ++....+|+..+..++..+.+++++|. |+||
T Consensus 437 Aii~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~---------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIA 503 (908)
T PRK13107 437 AIIKDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE---------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIA 503 (908)
T ss_pred HHHHHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEe
Confidence 34444444543 3789999999999999999999875 777888999999999999999999998 9999
Q ss_pred CCCccccCcCCCe---EEEEeCCccc-----c-----------eeccCCCCcccc-eeeecCHHhHHhhccccCCCC-Cc
Q 041899 283 TNIAETSLTIDGI---KYVVDSGYSK-----M-----------KWYNPKTGMESL-LVYPISKASAMQRAGRSGRTG-PG 341 (650)
Q Consensus 283 T~i~e~gidip~v---~~VId~G~~k-----~-----------~~~d~~~~~~~l-~~~~~s~~~~~Qr~GRaGR~~-~G 341 (650)
||+|++|.||.=- .+-+.. +.. . ..--...|+..+ ...+.|..-=.|-.|||||.| ||
T Consensus 504 TnmAGRGTDIkLggn~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPG 582 (908)
T PRK13107 504 TNMAGRGTDIVLGGNWNMEIEA-LENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAG 582 (908)
T ss_pred cCCcCCCcceecCCchHHhhhh-hcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCC
Confidence 9999999998610 000000 000 0 000001122222 223566666789999999999 89
Q ss_pred EEEEeeCccc
Q 041899 342 KCFRLYTINS 351 (650)
Q Consensus 342 ~~~~l~~~~~ 351 (650)
.+-.+.|-++
T Consensus 583 ss~f~lSlED 592 (908)
T PRK13107 583 SSRFYLSMED 592 (908)
T ss_pred ceeEEEEeCc
Confidence 8777776554
No 118
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.70 E-value=3.6e-16 Score=152.17 Aligned_cols=154 Identities=19% Similarity=0.089 Sum_probs=107.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC----CCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT----KHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~----~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.++++|.++++.+.+++++++++|||+|||..+...++..... ++.++++++|+++|+.|+++.+....+ ..+..
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~-~~~~~ 99 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGK-HTNLK 99 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhc-cCCce
Confidence 4799999999999999999999999999996655554443222 345899999999999999988765432 22222
Q ss_pred eeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 86 VGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 86 vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
++...... .....+..|+++|++.+.+.+.... .+.+++++|+||+|.-. +..+...+........++.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~~~~~l~~~~~~~ 178 (203)
T cd00268 100 VVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIREILKLLPKDRQTL 178 (203)
T ss_pred EEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHHHHHhCCcccEEE
Confidence 22111100 1112367899999999988776554 67889999999999422 2223222222222345689999
Q ss_pred EEccCCC
Q 041899 159 ISSATLD 165 (650)
Q Consensus 159 ~~SAT~~ 165 (650)
++|||++
T Consensus 179 ~~SAT~~ 185 (203)
T cd00268 179 LFSATMP 185 (203)
T ss_pred EEeccCC
Confidence 9999995
No 119
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.67 E-value=7.1e-15 Score=164.40 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeee
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSI 90 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~ 90 (650)
++++|.+++..+..++++|..++||+|||..+.+.++..... +..+++++|++.||.|.++.+.. +....|..+|...
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-g~~v~IVTpTrELA~Qdae~m~~-L~k~lGLsV~~i~ 170 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-GKPVHLVTVNDYLAQRDCEWVGS-VLRWLGLTTGVLV 170 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-cCCeEEEeCCHHHHHHHHHHHHH-HHhhcCCeEEEEe
Confidence 899999999999999999999999999994444444433232 33588889999999999987755 3334455555433
Q ss_pred ccccc----CCCCceEEEEChHHH-HHHHhcCC-CC-------CCCceEEecccc
Q 041899 91 RFEDC----TSEKTVLKYMTDGMV-LREMLSDP-KL-------ESYSVLMVDEAH 132 (650)
Q Consensus 91 ~~~~~----~~~~~~i~~~T~~~L-l~~l~~~~-~l-------~~~~~iIiDE~H 132 (650)
.+.+. ..-..+|+|+||+.| +..+..+. .+ +.+.++|||||+
T Consensus 171 GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEAD 225 (970)
T PRK12899 171 SGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVD 225 (970)
T ss_pred CCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechh
Confidence 22211 112578999999999 77766542 22 356899999999
No 120
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.66 E-value=1.1e-14 Score=160.70 Aligned_cols=275 Identities=18% Similarity=0.205 Sum_probs=182.2
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC---
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG--- 83 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g--- 83 (650)
...+.|..|.--...+..|+..-+.||||.||||....+-+..+ .+++++++++||..|+.|+++++.+ +....|
T Consensus 79 ~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-~kgkr~yii~PT~~Lv~Q~~~kl~~-~~e~~~~~~ 156 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-KKGKRVYIIVPTTTLVRQVYERLKK-FAEDAGSLD 156 (1187)
T ss_pred hCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-hcCCeEEEEecCHHHHHHHHHHHHH-HHhhcCCcc
Confidence 34578999999999999999999999999999977655543332 2457999999999999999999966 443333
Q ss_pred cEeeeeeccc---------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccc---cCCccccHHHHHH------
Q 041899 84 HEVGYSIRFE---------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAH---ERTLSTDILLGIF------ 145 (650)
Q Consensus 84 ~~vg~~~~~~---------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~H---er~~~~d~ll~~l------ 145 (650)
..+.|.-... ...+.+.+|.++|.+.|.+.+-.-.. -++++|++|+++ ..+-+.|-++.++
T Consensus 157 ~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~ 235 (1187)
T COG1110 157 VLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEV 235 (1187)
T ss_pred eeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHH
Confidence 2222322211 11345789999999999776533222 368999999999 2223333322221
Q ss_pred ----------HHHH----------------------hcCCCceEEEEccCCCh-----HHHHhhhCCCCccccCCcccce
Q 041899 146 ----------KDLV----------------------RLRSDLKLLISSATLDA-----EKFSAYFNFAPILRVPGRRYPV 188 (650)
Q Consensus 146 ----------~~~~----------------------~~~~~~kii~~SAT~~~-----~~~~~~~~~~~~~~~~~~~~~v 188 (650)
+.-. ...+.-.+|++|||..+ ..|.+.+|-.+--...+ .-.+
T Consensus 236 i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~-LRNI 314 (1187)
T COG1110 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEG-LRNI 314 (1187)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchh-hhhe
Confidence 1000 11234679999999943 35666665221110000 1123
Q ss_pred eEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCC---HHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHH
Q 041899 189 EIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTG---QEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQ 265 (650)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~---~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 265 (650)
...|... +... .+..+.... +...|||+|. ++.++++++.|+.. ++.+..+|+. .
T Consensus 315 vD~y~~~---~~~e----~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~---------Gi~a~~~~a~-----~ 372 (1187)
T COG1110 315 VDIYVES---ESLE----KVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH---------GINAELIHAE-----K 372 (1187)
T ss_pred eeeeccC---ccHH----HHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc---------CceEEEeecc-----c
Confidence 3334333 2222 222333222 4467999998 88888888888875 7888888884 3
Q ss_pred hhhcCCCCCCCcEEEEeC----CCccccCcCC-CeEEEEeCCcccce
Q 041899 266 AKIFVPTPDGARKVVLAT----NIAETSLTID-GIKYVVDSGYSKMK 307 (650)
Q Consensus 266 ~~i~~~~~~g~~kilvaT----~i~e~gidip-~v~~VId~G~~k~~ 307 (650)
.+.++.|..|+++++|.. +++-+|+|+| -++|+|=.|..|.+
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~r 419 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFR 419 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCcee
Confidence 567899999999999975 6899999999 57899999987544
No 121
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.63 E-value=7.1e-16 Score=129.55 Aligned_cols=91 Identities=55% Similarity=0.864 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccc-cChHHHHHHHHhhhcCCCccccCcchHHHHHHHHh
Q 041899 400 KALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKF-KCSNEIITIAALLSVGNSVFYRPKNKKFLADNARM 478 (650)
Q Consensus 400 ~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~-~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~ 478 (650)
+|++.|+.+||||.+|++|++|+.|++||++|++||||+.+..+ +|.+++++|+|+++. .++|..+ .........+.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~-~~~~~~~-~~~~~~~~~~~ 78 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSV-GDPFPRP-EKRAEADAARR 78 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcC-CCCcCCc-hHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 899999999999998 4567766 44455566677
Q ss_pred cccCCCCCCHHHHH
Q 041899 479 NFYQGDAGDHIALL 492 (650)
Q Consensus 479 ~~~~~~~sD~~~~l 492 (650)
.|..+..|||++++
T Consensus 79 ~~~~~~~~D~~~~l 92 (92)
T smart00847 79 RFASGRESDHLTLL 92 (92)
T ss_pred HccCCCCCChhhhC
Confidence 78764269999863
No 122
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.62 E-value=6.3e-14 Score=163.81 Aligned_cols=183 Identities=22% Similarity=0.236 Sum_probs=109.2
Q ss_pred ceEEEEccCCC----hHHHHhhhCCCCc--cccCCcccce---eEEEec--CC------CCchHHHHHHHHHHHHhcCCC
Q 041899 155 LKLLISSATLD----AEKFSAYFNFAPI--LRVPGRRYPV---EIHYTK--AP------ESNYIDAAIVTTLEIHATQAS 217 (650)
Q Consensus 155 ~kii~~SAT~~----~~~~~~~~~~~~~--~~~~~~~~~v---~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~ 217 (650)
-.+|++|||+. .+-+.+.+|-... ......+|+. ...|.+ .+ ..++.......+.++... .+
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cC
Confidence 35899999994 3455566663221 1121222331 111221 11 123444555555555443 36
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeE-
Q 041899 218 GDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIK- 296 (650)
Q Consensus 218 ~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~- 296 (650)
|++|||+++.+..+.++..|...... .+..+. ..+.. ..|.++++.|++|+..||++|+.+.+|||+|+..
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~-----~~~~~l--~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l 746 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEF-----EGYEVL--AQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGL 746 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccc-----cCceEE--ecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCce
Confidence 89999999999999999998753211 122222 22222 4678888999999999999999999999999766
Q ss_pred -EEEeCCcccceeccC----------CCCcccc--eeeecCHHhHHhhccccCCCC--CcEEEEe
Q 041899 297 -YVVDSGYSKMKWYNP----------KTGMESL--LVYPISKASAMQRAGRSGRTG--PGKCFRL 346 (650)
Q Consensus 297 -~VId~G~~k~~~~d~----------~~~~~~l--~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l 346 (650)
.||..|+.-..--|| ..|...+ +..|.....+.|-+||.=|.. .|..+.+
T Consensus 747 ~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 747 VCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 566666542211111 0111111 222445567899999999988 4655554
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.62 E-value=5.2e-14 Score=162.56 Aligned_cols=310 Identities=18% Similarity=0.163 Sum_probs=185.5
Q ss_pred CchHHHHHHHHHHH----cCCeEEEEcCCCChHHHHHHHHHHhc--ccCCCCeEEEecchHHHHHHHHHHHHHHhCC-cc
Q 041899 10 PIYHYREQVLRAVQ----ENQVVVIVGETGSGKTTQIPQYLHEA--GYTKHGKVGCTQPRRVAAISVAARVSREMGV-KL 82 (650)
Q Consensus 10 pl~~~q~~~l~~l~----~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~-~~ 82 (650)
.+++||.+.+..+. .+...|+.-+.|.|||.++..++... .....+.+||++|.- +..+..+.+.+.... .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHCCCCce
Confidence 48999999998864 56788999999999997665544322 112345789999964 456677666553321 11
Q ss_pred CcEeeeee-----cccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHH-HHHHHHHHhcCCCce
Q 041899 83 GHEVGYSI-----RFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDIL-LGIFKDLVRLRSDLK 156 (650)
Q Consensus 83 g~~vg~~~-----~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~l-l~~l~~~~~~~~~~k 156 (650)
....|... ...........|+++|++++.+....- .--++++||+||+| +--+.... -..++. .. ...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L-~k~~W~~VIvDEAH-rIKN~~Sklskalr~---L~-a~~ 321 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTAL-KRFSWRYIIIDEAH-RIKNENSLLSKTMRL---FS-TNY 321 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHh-ccCCCCEEEEcCcc-ccCCHHHHHHHHHHH---hh-cCc
Confidence 11112110 000111235679999999987643211 12357899999999 33332222 222222 22 234
Q ss_pred EEEEccCC---ChHHH------------------HhhhCCC-----------------CccccC-----Ccccce---eE
Q 041899 157 LLISSATL---DAEKF------------------SAYFNFA-----------------PILRVP-----GRRYPV---EI 190 (650)
Q Consensus 157 ii~~SAT~---~~~~~------------------~~~~~~~-----------------~~~~~~-----~~~~~v---~~ 190 (650)
.+++|+|+ +...+ ..||... |++... ....|. .+
T Consensus 322 RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~i 401 (1033)
T PLN03142 322 RLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETI 401 (1033)
T ss_pred EEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEE
Confidence 58899998 33322 2222210 000000 000111 11
Q ss_pred EEecCCC--CchHH-----------------HH-----------------------------------------HHHHHH
Q 041899 191 HYTKAPE--SNYID-----------------AA-----------------------------------------IVTTLE 210 (650)
Q Consensus 191 ~~~~~~~--~~~~~-----------------~~-----------------------------------------~~~~~~ 210 (650)
.+...+. ..+.. .. +..++.
T Consensus 402 v~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~ 481 (1033)
T PLN03142 402 LKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLP 481 (1033)
T ss_pred EeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHH
Confidence 1111100 00000 00 000011
Q ss_pred HHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCC---CCcEEEEeCCCcc
Q 041899 211 IHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPD---GARKVVLATNIAE 287 (650)
Q Consensus 211 ~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~---g~~kilvaT~i~e 287 (650)
. ....+.++|||+.-......+...|... ++..+.+||+++.++|..+++.|.. +..-+|++|.+++
T Consensus 482 ~-Lk~~g~KVLIFSQft~~LdiLed~L~~~---------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 482 K-LKERDSRVLIFSQMTRLLDILEDYLMYR---------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred H-HHhcCCeEEeehhHHHHHHHHHHHHHHc---------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 1 1123569999998777666666666543 6778889999999999999999964 2346789999999
Q ss_pred ccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC---cEEEEeeCcccccc
Q 041899 288 TSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP---GKCFRLYTINSYQE 354 (650)
Q Consensus 288 ~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~~~ 354 (650)
.|||+...++||. ++.+-++....|+.||+-|.|. =.+|+|++....++
T Consensus 552 lGINLt~Ad~VIi------------------yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 552 LGINLATADIVIL------------------YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred cCCchhhCCEEEE------------------eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 9999999999997 5558899999999999999994 35889988876543
No 124
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=2.9e-15 Score=154.82 Aligned_cols=310 Identities=13% Similarity=0.058 Sum_probs=198.8
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhc-ccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEA-GYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
-.-+.+|.+++..+.+++++++.-.|.+||+++........ ........++..|+.++++...+.+.-....-......
T Consensus 285 E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A 364 (1034)
T KOG4150|consen 285 ESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSA 364 (1034)
T ss_pred cchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhcc
Confidence 34678899999999999999999999999995433322221 12234477888899988876442110000000000001
Q ss_pred eeeccccc--------CCCCceEEEEChHHHHHHHhcCC-----CCCCCceEEeccccc-CCccccHHHHHHHHHHh---
Q 041899 88 YSIRFEDC--------TSEKTVLKYMTDGMVLREMLSDP-----KLESYSVLMVDEAHE-RTLSTDILLGIFKDLVR--- 150 (650)
Q Consensus 88 ~~~~~~~~--------~~~~~~i~~~T~~~Ll~~l~~~~-----~l~~~~~iIiDE~He-r~~~~d~ll~~l~~~~~--- 150 (650)
|....+.. ...+.+.+|..+.+.....+.+. .+-...++++||+|- .++........++.+..
T Consensus 365 ~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~ 444 (1034)
T KOG4150|consen 365 YVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIK 444 (1034)
T ss_pred eeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHH
Confidence 11111111 12356788888887766554332 233456789999993 22222222223333322
Q ss_pred ---cCCCceEEEEccCC--ChHHHHhhhCCC--CccccCCcccceeEE--EecC--CC-----CchHHHHHHHHHHHHhc
Q 041899 151 ---LRSDLKLLISSATL--DAEKFSAYFNFA--PILRVPGRRYPVEIH--YTKA--PE-----SNYIDAAIVTTLEIHAT 214 (650)
Q Consensus 151 ---~~~~~kii~~SAT~--~~~~~~~~~~~~--~~~~~~~~~~~v~~~--~~~~--~~-----~~~~~~~~~~~~~~~~~ 214 (650)
...+++++-.|||. ......+.++-. ..++++|.+..-+.. |.+. |. .+++........++..
T Consensus 445 ~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~- 523 (1034)
T KOG4150|consen 445 GFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQ- 523 (1034)
T ss_pred HHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHH-
Confidence 34689999999999 445666677633 456667766544333 3322 11 1223322233333332
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCC
Q 041899 215 QASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDG 294 (650)
Q Consensus 215 ~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~ 294 (650)
.+-+++.||+.+.-++-+....++.+-+.+++. -..+..+.||.+.++|++|+...-.|+.+-|+|||++|-||||.+
T Consensus 524 -~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~L-V~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~ 601 (1034)
T KOG4150|consen 524 -HGLRCIAFCPSRKLCELVLCLTREILAETAPHL-VEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGH 601 (1034)
T ss_pred -cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHH-HHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccc
Confidence 366899999999998888777666554333211 112455789999999999998888999999999999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC
Q 041899 295 IKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG 339 (650)
Q Consensus 295 v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~ 339 (650)
.+.|+.+|+ |.|.+++.|..|||||..
T Consensus 602 LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 602 LDAVLHLGF------------------PGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred ceeEEEccC------------------chhHHHHHHHhccccccC
Confidence 999999887 899999999999999987
No 125
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.58 E-value=1.3e-14 Score=148.38 Aligned_cols=301 Identities=15% Similarity=0.149 Sum_probs=187.0
Q ss_pred CchHHHHHHHHHHHcC---CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 10 PIYHYREQVLRAVQEN---QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~---~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
-+++||+..+..+-.| +.-||+.|.|+|||..-.-++ -.-+++++|+...-+.+.|....+...........+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa----~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~ 377 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA----CTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQIC 377 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee----eeecccEEEEecCccCHHHHHHHHHhhcccCccceE
Confidence 3789999999998755 467999999999994322211 112457899999999999988887554333333333
Q ss_pred eeeecccccCCCCceEEEEChHHHHH---------HHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMVLR---------EMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~Ll~---------~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
-+.-........++.|++.|..|+-. .++.--.-..++++++||+| .+....+..++..+...+ -
T Consensus 378 rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVH--vvPA~MFRRVlsiv~aHc----K 451 (776)
T KOG1123|consen 378 RFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVH--VVPAKMFRRVLSIVQAHC----K 451 (776)
T ss_pred EeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhc--cchHHHHHHHHHHHHHHh----h
Confidence 23222222234567799999987732 11111113468999999999 444444444444443333 3
Q ss_pred EEEccCC--ChHHHHh--hhCCCCccc-----cC--Cccccee--EEEecCCCC---ch-----------------HHHH
Q 041899 158 LISSATL--DAEKFSA--YFNFAPILR-----VP--GRRYPVE--IHYTKAPES---NY-----------------IDAA 204 (650)
Q Consensus 158 i~~SAT~--~~~~~~~--~~~~~~~~~-----~~--~~~~~v~--~~~~~~~~~---~~-----------------~~~~ 204 (650)
++++||+ .-+.+.+ |+-++.+.+ .. |-.-.|. ..|-+.... +| ...+
T Consensus 452 LGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFra 531 (776)
T KOG1123|consen 452 LGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRA 531 (776)
T ss_pred ccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHH
Confidence 7899998 3333333 222221111 11 1111111 111111100 01 1123
Q ss_pred HHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCC-CCCcEEEEeC
Q 041899 205 IVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTP-DGARKVVLAT 283 (650)
Q Consensus 205 ~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~-~g~~kilvaT 283 (650)
...+++.|.. .+.+||||..+.-.....+-.|.+ -.+||..++.+|.+|++.|+ +..++.|+-+
T Consensus 532 CqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K--------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS 596 (776)
T KOG1123|consen 532 CQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK--------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLS 596 (776)
T ss_pred HHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC--------------ceEECCCchhHHHHHHHhcccCCccceEEEe
Confidence 3455666665 478999999887666655554432 13699999999999999997 4468899999
Q ss_pred CCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-------CcEEEEeeCcccc
Q 041899 284 NIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-------PGKCFRLYTINSY 352 (650)
Q Consensus 284 ~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-------~G~~~~l~~~~~~ 352 (650)
.+..+++|+|..++.|.. ...--|..+-.||.||.-|.. +...|.|.+++..
T Consensus 597 KVgDtSiDLPEAnvLIQI-----------------SSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 597 KVGDTSIDLPEANVLIQI-----------------SSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred eccCccccCCcccEEEEE-----------------cccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 999999999999999973 222467788899999998876 2346666666554
No 126
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.54 E-value=2e-13 Score=131.55 Aligned_cols=164 Identities=26% Similarity=0.208 Sum_probs=113.4
Q ss_pred cCCCchHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRAVQEN-QVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
...+++++|.++++.+.+. +++++.+|||+|||+.+..++.+..... ..+++++.|++.++.|...++...+....+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLK 84 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeE
Confidence 4567899999999999988 9999999999999987777776653322 3589999999999999999987765432111
Q ss_pred Eeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCc--cccHHHHHHHHHHhcCCCc
Q 041899 85 EVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTL--STDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 85 ~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~~~~~~~ 155 (650)
......... ........++++|++.+.+.+.... ....++++|+||+|.... ..+....++.. ..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~~~ 161 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL---LPKNV 161 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh---CCccc
Confidence 111111111 0112233899999999998887655 567789999999995442 22222222222 35678
Q ss_pred eEEEEccCC--ChHHHHhhh
Q 041899 156 KLLISSATL--DAEKFSAYF 173 (650)
Q Consensus 156 kii~~SAT~--~~~~~~~~~ 173 (650)
++++||||+ +.+.....+
T Consensus 162 ~~v~~saT~~~~~~~~~~~~ 181 (201)
T smart00487 162 QLLLLSATPPEEIENLLELF 181 (201)
T ss_pred eEEEEecCCchhHHHHHHHh
Confidence 999999999 344444433
No 127
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.54 E-value=2.8e-14 Score=125.55 Aligned_cols=133 Identities=21% Similarity=0.329 Sum_probs=91.0
Q ss_pred cCCeEEEEcCCCChHHH-HHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeeccc-ccCCCCce
Q 041899 24 ENQVVVIVGETGSGKTT-QIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFE-DCTSEKTV 101 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~-~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~-~~~~~~~~ 101 (650)
+++..+|...||+|||+ .+|.++.+. +.++.+++++.|+|+++.++++.+. +.+ +.+..... .....+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~-i~~~~rvLvL~PTRvva~em~~aL~---~~~----~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREA-IKRRLRVLVLAPTRVVAEEMYEALK---GLP----VRFHTNARMRTHFGSSI 74 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHH-HHTT--EEEEESSHHHHHHHHHHTT---TSS----EEEESTTSS----SSSS
T ss_pred CCceeEEecCCCCCCcccccHHHHHHH-HHccCeEEEecccHHHHHHHHHHHh---cCC----cccCceeeeccccCCCc
Confidence 56778999999999997 577766655 6677899999999999999987763 222 22222221 12345678
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
|.++|.+.+.+.+.+...+.+|++||+||+|--+..+-...+.++..... ...++|.||||++
T Consensus 75 i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 75 IDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPP 137 (148)
T ss_dssp EEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-T
T ss_pred ccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCC
Confidence 89999999999888866889999999999996666555666666665443 4578999999984
No 128
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.54 E-value=8.5e-13 Score=148.94 Aligned_cols=310 Identities=17% Similarity=0.174 Sum_probs=179.3
Q ss_pred hhhcCCCchHHHHHHHHHHHc--------CCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEecchHHHHHHHHHHH
Q 041899 4 KERKTLPIYHYREQVLRAVQE--------NQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 4 ~~r~~lpl~~~q~~~l~~l~~--------~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~la~q~~~~v 74 (650)
.+|..-|-+.||+.+.+.+.. +=-+|=.|.||||||+.=..+++...-.. +-+..+..-.|.|..|.-..+
T Consensus 402 ~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~ 481 (1110)
T TIGR02562 402 CQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHAL 481 (1110)
T ss_pred ccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHH
Confidence 356777899999999988642 33467799999999966544444322222 237777777777777666666
Q ss_pred HHHhCCc---cCcEee-------e-----------------------------eecccccC-----------C------C
Q 041899 75 SREMGVK---LGHEVG-------Y-----------------------------SIRFEDCT-----------S------E 98 (650)
Q Consensus 75 ~~~~~~~---~g~~vg-------~-----------------------------~~~~~~~~-----------~------~ 98 (650)
.+.++.. +...|| + .+.++... . -
T Consensus 482 r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll 561 (1110)
T TIGR02562 482 KTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL 561 (1110)
T ss_pred HHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh
Confidence 5555432 111122 0 01111110 0 1
Q ss_pred CceEEEEChHHHHHHHhcCC----CCC----CCceEEecccccCCccccHHHHHHHHHHh--cCCCceEEEEccCCChHH
Q 041899 99 KTVLKYMTDGMVLREMLSDP----KLE----SYSVLMVDEAHERTLSTDILLGIFKDLVR--LRSDLKLLISSATLDAEK 168 (650)
Q Consensus 99 ~~~i~~~T~~~Ll~~l~~~~----~l~----~~~~iIiDE~Her~~~~d~ll~~l~~~~~--~~~~~kii~~SAT~~~~~ 168 (650)
...+.++|.+.++.....-. .+. .-+.|||||+|-.+... +.++..++. ..-+.++++||||+++..
T Consensus 562 ~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~---~~~L~rlL~w~~~lG~~VlLmSATLP~~l 638 (1110)
T TIGR02562 562 AAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED---LPALLRLVQLAGLLGSRVLLSSATLPPAL 638 (1110)
T ss_pred cCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH---HHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 24588999988876653211 111 13789999999444333 223333332 334678999999997664
Q ss_pred HHh----hhCCCCc----cccCCcccceeE---------------------------------------------EEecC
Q 041899 169 FSA----YFNFAPI----LRVPGRRYPVEI---------------------------------------------HYTKA 195 (650)
Q Consensus 169 ~~~----~~~~~~~----~~~~~~~~~v~~---------------------------------------------~~~~~ 195 (650)
... |..+... ...++...++-. ...+.
T Consensus 639 ~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~ 718 (1110)
T TIGR02562 639 VKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSS 718 (1110)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCC
Confidence 333 3211000 000111111111 11111
Q ss_pred CCC-------chHHHHHHHHHHHHhcC----C-CC-C---EEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCC
Q 041899 196 PES-------NYIDAAIVTTLEIHATQ----A-SG-D---ILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYAN 259 (650)
Q Consensus 196 ~~~-------~~~~~~~~~~~~~~~~~----~-~~-~---iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~ 259 (650)
... .+.......++.+|... + .| + .||=+.+.+.+..++..|...... ....+.++.|||.
T Consensus 719 ~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~---~~~~i~~~~yHSr 795 (1110)
T TIGR02562 719 LPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAE---EKYQIHLCCYHAQ 795 (1110)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccc---cCCceeEEEeccc
Confidence 110 12222333344444321 1 12 2 278888899999999988776432 2235778899999
Q ss_pred CCHHHHhhhcCC--------------------------CCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCC
Q 041899 260 LPTELQAKIFVP--------------------------TPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKT 313 (650)
Q Consensus 260 l~~~~r~~i~~~--------------------------~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~ 313 (650)
.+...|..+++. ...+...|+|||++.|.|+|++ .+.+|
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~-------------- 860 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI-------------- 860 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--------------
Confidence 987777665422 1135779999999999999988 33333
Q ss_pred CcccceeeecCHHhHHhhccccCCCCC
Q 041899 314 GMESLLVYPISKASAMQRAGRSGRTGP 340 (650)
Q Consensus 314 ~~~~l~~~~~s~~~~~Qr~GRaGR~~~ 340 (650)
..+.+..+.+||+||+.|.+.
T Consensus 861 ------~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 861 ------ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ------eccCcHHHHHHHhhccccccc
Confidence 237889999999999999984
No 129
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.53 E-value=1.6e-13 Score=124.39 Aligned_cols=136 Identities=33% Similarity=0.313 Sum_probs=95.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccC------CC
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCT------SE 98 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~------~~ 98 (650)
+++++.+|||+|||+++..++.+.... ..+++++++|++.++.+..+.+...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 368999999999998888777765332 4569999999999999999988776642 33344433333322 45
Q ss_pred CceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 99 KTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 99 ~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
...++++|++.+.+.+.... ....+++|||||+|.-.... ................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQG-FGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcc-hHHHHHHHHhhCCccceEEEEeccC
Confidence 78899999999988776554 45678999999999322221 1111122233345678899999996
No 130
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.52 E-value=2.6e-12 Score=133.27 Aligned_cols=167 Identities=21% Similarity=0.190 Sum_probs=121.9
Q ss_pred CceEEEEccCCChHHHHhhhCC--CCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 154 DLKLLISSATLDAEKFSAYFNF--APILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 154 ~~kii~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
..|+|..|||+..-.+..--+. ..++...|-.-| .+.. .|....++..+..+..... .+.++||-+-|++.++
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~vveQiIRPTGLlDP-~iev--Rp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmAE 460 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNVVEQIIRPTGLLDP-EIEV--RPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMAE 460 (663)
T ss_pred cCCEEEEECCCChHHHHhccCceeEEeecCCCCCCC-ceee--ecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHHH
Confidence 3589999999955544432211 112222222212 1111 2334455555555544333 3679999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 232 TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
.+.++|.+. ++.+..+||++..-+|.+++...+.|..+|||.-|.+-.|+|+|.|..|.. .|.
T Consensus 461 dLT~Yl~e~---------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI--------lDA 523 (663)
T COG0556 461 DLTEYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI--------LDA 523 (663)
T ss_pred HHHHHHHhc---------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE--------eec
Confidence 999999886 899999999999999999999999999999999999999999999999864 222
Q ss_pred CCCcccceeeecCHHhHHhhccccCCCCCcEEEEee
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLY 347 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~ 347 (650)
.. ....-|-.+.+|-+|||.|.-.|+++...
T Consensus 524 DK-----eGFLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 524 DK-----EGFLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred Cc-----cccccccchHHHHHHHHhhccCCeEEEEc
Confidence 11 22356788999999999999999988643
No 131
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.51 E-value=7.4e-14 Score=125.38 Aligned_cols=103 Identities=22% Similarity=0.452 Sum_probs=93.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI 295 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v 295 (650)
+++++|||+++...++.+++.|.+. ...+..+||+++..++..+++.|.+|..+|+++|+++++|+|+|++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~ 97 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP---------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNV 97 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhC
Confidence 4789999999999999999999762 5678999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEE
Q 041899 296 KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 296 ~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
++||. ...+.+...+.|++||+||.| .|.|+.
T Consensus 98 ~~vi~------------------~~~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 98 SVVIN------------------YDLPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred CEEEE------------------eCCCCCHHHheecccccccCCCCceEEe
Confidence 99997 344789999999999999999 677765
No 132
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.2e-12 Score=143.09 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=78.6
Q ss_pred cCCCchHHHHHHHHH--HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRA--VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~--l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
+.+-++++-.+++-. +.+|+ |....||+|||..+.+.++-... .+..+.++.|+..||.+-++.+...+. .+|.
T Consensus 73 R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL-~G~~VhvvT~NdyLA~RDae~m~~ly~-~LGL 148 (764)
T PRK12326 73 RTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYAL-QGRRVHVITVNDYLARRDAEWMGPLYE-ALGL 148 (764)
T ss_pred HHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHH-cCCCeEEEcCCHHHHHHHHHHHHHHHH-hcCC
Confidence 344444444445544 45554 78999999999665555444333 456789999999999999988876543 3566
Q ss_pred Eeeeeecccc----cCCCCceEEEEChHH-----HHHHHhcCC---CCCCCceEEecccc
Q 041899 85 EVGYSIRFED----CTSEKTVLKYMTDGM-----VLREMLSDP---KLESYSVLMVDEAH 132 (650)
Q Consensus 85 ~vg~~~~~~~----~~~~~~~i~~~T~~~-----Ll~~l~~~~---~l~~~~~iIiDE~H 132 (650)
.||....... ...-.++|+|+|+.- |-..+..++ ..+.+.+.||||++
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvD 208 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEAD 208 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchh
Confidence 6665432221 112357899999964 333333222 35678899999999
No 133
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.50 E-value=2.1e-13 Score=154.10 Aligned_cols=112 Identities=21% Similarity=0.175 Sum_probs=98.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI 295 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v 295 (650)
.+.+++|||+++..++.+++.|.+. ++.+..+||+++..+|..+++.|++|...|+|||+++++|+|+|++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~---------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v 515 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL---------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEV 515 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc---------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCC
Confidence 3678999999999999999999875 7888999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCc
Q 041899 296 KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTI 349 (650)
Q Consensus 296 ~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~ 349 (650)
++||.+.. . +...|.+..+|+||+||+||...|.|+.+++.
T Consensus 516 ~lVii~d~--------e-----ifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 516 SLVAILDA--------D-----KEGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred cEEEEeCC--------c-----ccccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 99997421 1 12236789999999999999989999998874
No 134
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.47 E-value=1.6e-11 Score=141.76 Aligned_cols=133 Identities=16% Similarity=0.159 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecC-CCCHHHHhhhcCCCCCCCc
Q 041899 199 NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYA-NLPTELQAKIFVPTPDGAR 277 (650)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~-~l~~~~r~~i~~~~~~g~~ 277 (650)
+|.+.....+..+. ..+|++||+++|.+..+.+++.|... ...+ ...| +.+ +.++.+.|+.+..
T Consensus 631 ~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~---------~~~~-l~Qg~~~~---~~~l~~~F~~~~~ 695 (820)
T PRK07246 631 VYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW---------QVSH-LAQEKNGT---AYNIKKRFDRGEQ 695 (820)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc---------CCcE-EEeCCCcc---HHHHHHHHHcCCC
Confidence 45555555555544 34799999999999999999888542 1222 2223 222 3456777888888
Q ss_pred EEEEeCCCccccCcCC--CeEEEEeCCcccceeccC----------CCCcccc--eeeecCHHhHHhhccccCCCC--Cc
Q 041899 278 KVVLATNIAETSLTID--GIKYVVDSGYSKMKWYNP----------KTGMESL--LVYPISKASAMQRAGRSGRTG--PG 341 (650)
Q Consensus 278 kilvaT~i~e~gidip--~v~~VId~G~~k~~~~d~----------~~~~~~l--~~~~~s~~~~~Qr~GRaGR~~--~G 341 (650)
.||++|+....|||+| +...||..++.-..--|| ..|-+.+ +..|.-...+.|-+||.=|.. .|
T Consensus 696 ~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~G 775 (820)
T PRK07246 696 QILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKS 775 (820)
T ss_pred eEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcE
Confidence 9999999999999997 355566555442222222 1122222 223444567899999999988 47
Q ss_pred EEEEe
Q 041899 342 KCFRL 346 (650)
Q Consensus 342 ~~~~l 346 (650)
.++.+
T Consensus 776 vv~il 780 (820)
T PRK07246 776 AVLIL 780 (820)
T ss_pred EEEEE
Confidence 66555
No 135
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.45 E-value=5.2e-13 Score=127.38 Aligned_cols=146 Identities=15% Similarity=0.131 Sum_probs=94.6
Q ss_pred CCchHHHHHHHHHHHc-------CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 9 LPIYHYREQVLRAVQE-------NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~-------~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+.++++|++++..+.+ ++.+++.+|||||||..+..++.+... ++++++|+..++.|..+.+.......
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 4689999999999873 689999999999999777666655422 89999999999999998884322221
Q ss_pred cCcEee-----------------eeecccccCCCCceEEEEChHHHHHHHhcC------------CCCCCCceEEecccc
Q 041899 82 LGHEVG-----------------YSIRFEDCTSEKTVLKYMTDGMVLREMLSD------------PKLESYSVLMVDEAH 132 (650)
Q Consensus 82 ~g~~vg-----------------~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~------------~~l~~~~~iIiDE~H 132 (650)
. ...+ ..............+.+.|...+....... .....+++||+||+|
T Consensus 78 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 78 Y-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp E-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred h-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 1 1100 000001112346678999998887665431 134567999999999
Q ss_pred cCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 133 ERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 133 er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
. ...... .+.+.. .+...+|+||||+.
T Consensus 157 ~-~~~~~~----~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 H-YPSDSS----YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp C-THHHHH----HHHHHH-SSCCEEEEEESS-S
T ss_pred h-cCCHHH----HHHHHc-CCCCeEEEEEeCcc
Confidence 3 322221 222222 56778999999973
No 136
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=2.2e-12 Score=144.56 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=83.0
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
|+.|-+.+|--+++-.+.=++--|....||+|||..+.+.++-... .+..+.++.|+..||.+-++.+...+. .+|..
T Consensus 76 ~R~lGm~~ydVQliGg~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-~G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~ 153 (913)
T PRK13103 76 KRVMGMRHFDVQLIGGMTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-SGKGVHVVTVNDYLARRDANWMRPLYE-FLGLS 153 (913)
T ss_pred HHHhCCCcchhHHHhhhHhccCccccccCCCCChHHHHHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHHHhc-ccCCE
Confidence 4455566666667766554555699999999999655554443322 356788999999999999988877553 35666
Q ss_pred eeeeeccc----ccCCCCceEEEEChHHH----HH-HHhc---CCCCCCCceEEecccc
Q 041899 86 VGYSIRFE----DCTSEKTVLKYMTDGMV----LR-EMLS---DPKLESYSVLMVDEAH 132 (650)
Q Consensus 86 vg~~~~~~----~~~~~~~~i~~~T~~~L----l~-~l~~---~~~l~~~~~iIiDE~H 132 (650)
||...... ....-..+|+|+|+..+ |+ .+.. +...+++.++||||+|
T Consensus 154 v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvD 212 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVD 212 (913)
T ss_pred EEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhh
Confidence 66432211 11223478999999875 22 2211 1134789999999999
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=5.1e-12 Score=141.74 Aligned_cols=314 Identities=18% Similarity=0.156 Sum_probs=204.7
Q ss_pred HHHHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeec--
Q 041899 15 REQVLRAV-QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIR-- 91 (650)
Q Consensus 15 q~~~l~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~-- 91 (650)
|.++++.+ ..+++++|.+|+|||||.++..+++. ....++++++.|.-+.+..+++.+...++.-.|..+--...
T Consensus 1148 qtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~ 1225 (1674)
T KOG0951|consen 1148 QTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET 1225 (1674)
T ss_pred eEEEEeeeecccceEEEecCCCCchhHHHHHHhcC--CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc
Confidence 44444443 46789999999999999999888877 34456999999999999999988888776555554331111
Q ss_pred -ccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCC-cc---ccHHHHHHHHH-HhcCCCceEEEEccCC-
Q 041899 92 -FEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERT-LS---TDILLGIFKDL-VRLRSDLKLLISSATL- 164 (650)
Q Consensus 92 -~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~-~~---~d~ll~~l~~~-~~~~~~~kii~~SAT~- 164 (650)
.+.+.....+++++||+..-.. + ....+++.|.||.|.-+ .. .+.+.. .+.+ ...-+++|++.+|..+
T Consensus 1226 s~~lkl~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1226 SLDLKLLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLA 1300 (1674)
T ss_pred ccchHHhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhc
Confidence 1122335689999999875322 1 57788999999999533 11 122333 2222 2245678999999998
Q ss_pred ChHHHHhhhCCCCcccc--CCcccceeEEEecCCCCchHHHH---HHH---HHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 041899 165 DAEKFSAYFNFAPILRV--PGRRYPVEIHYTKAPESNYIDAA---IVT---TLEIHATQASGDILVFLTGQEEIETVEEI 236 (650)
Q Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~iLVF~~~~~~i~~~~~~ 236 (650)
|+.++ -++....++.. ..|..|.+++........+.... ... .+.-+. ..+.+.+||+|+++++..++..
T Consensus 1301 na~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a-~~~k~~~vf~p~rk~~~~~a~~ 1378 (1674)
T KOG0951|consen 1301 NARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA-GNRKPAIVFLPTRKHARLVAVD 1378 (1674)
T ss_pred cchhh-ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh-cCCCCeEEEeccchhhhhhhhc
Confidence 77777 22323334433 35566777665444333222211 111 111222 2467899999999999998876
Q ss_pred HHHHHHhh------------cCC-CCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCc
Q 041899 237 LKERIRKL------------GTK-IGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGY 303 (650)
Q Consensus 237 L~~~~~~~------------~~~-~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~ 303 (650)
+-...... ... ...+....=|-+|+..++.-+-..|..|.++|+|...- -.|+-...--+|| .|
T Consensus 1379 ~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-mg- 1455 (1674)
T KOG0951|consen 1379 LVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-MG- 1455 (1674)
T ss_pred cchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-ec-
Confidence 64432110 000 00111111288999999999989999999999988765 7777766443444 34
Q ss_pred ccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeC
Q 041899 304 SKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYT 348 (650)
Q Consensus 304 ~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 348 (650)
+..||.+... ..+.+.+...||.|+|.| .|+|+.+..
T Consensus 1456 --t~~ydg~e~~----~~~y~i~~ll~m~G~a~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1456 --TQYYDGKEHS----YEDYPIAELLQMVGLASG--AGKCVIMCH 1492 (1674)
T ss_pred --ceeecccccc----cccCchhHHHHHhhhhcC--CccEEEEec
Confidence 6789987763 347888999999999988 677777653
No 138
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.44 E-value=6.4e-14 Score=113.73 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=67.9
Q ss_pred ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHH
Q 041899 250 ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAM 329 (650)
Q Consensus 250 ~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~ 329 (650)
++.+..+||+++.++|..+++.|.+|..+||+||+++++|+|+|++++||..+ .+.|..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~------------------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYD------------------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESS------------------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccc------------------cCCCHHHHH
Confidence 78899999999999999999999999999999999999999999999999843 389999999
Q ss_pred hhccccCCCC
Q 041899 330 QRAGRSGRTG 339 (650)
Q Consensus 330 Qr~GRaGR~~ 339 (650)
|++||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999986
No 139
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=8.1e-13 Score=148.48 Aligned_cols=163 Identities=21% Similarity=0.298 Sum_probs=117.4
Q ss_pred eEEEEccCC--ChHHHHhhhCCCCccccCCcccce-----eEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 156 KLLISSATL--DAEKFSAYFNFAPILRVPGRRYPV-----EIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 156 kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
|+-+||.|. ....|.+.++ -+++.+|....-. +..|. ...+.....+..+...+ ..+.++||||++++
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~-L~Vv~IPTnrP~~R~D~~d~vy~--t~~eK~~Ali~~I~~~~--~~grpVLIft~Sve 609 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK-LDVVVIPTNKPIVRKDMDDLVYK--TRREKYNAIVLKVEELQ--KKGQPVLVGTASVE 609 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC-CcEEECCCCCCcceecCCCeEec--CHHHHHHHHHHHHHHHh--hCCCCEEEEeCcHH
Confidence 678899988 3445655553 4555565432111 11121 11223333334443333 24789999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC---CeEEE-----Ee
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID---GIKYV-----VD 300 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip---~v~~V-----Id 300 (650)
.++.++..|.+. ++....+|+ ...+|+..+..++.+...|+||||+|++|+||+ +|..| |.
T Consensus 610 ~sE~Ls~~L~~~---------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg 678 (1025)
T PRK12900 610 VSETLSRMLRAK---------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG 678 (1025)
T ss_pred HHHHHHHHHHHc---------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC
Confidence 999999999875 677788897 567888888899999999999999999999999 45333 54
Q ss_pred CCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 301 SGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 301 ~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
...+.|...+.||.||+||.| ||.+..+++.++.
T Consensus 679 ------------------terhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 679 ------------------SERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ------------------CCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 344788899999999999999 8999999987664
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=7.6e-11 Score=131.04 Aligned_cols=118 Identities=25% Similarity=0.307 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC-CcEEE
Q 041899 202 DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-ARKVV 280 (650)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~kil 280 (650)
.+.+..+...+. .+.+|||.+.+.+..+.++..|.+. ++....+++.-...+- .++. ..| .-.|.
T Consensus 413 ~Aii~ei~~~~~--~gqPVLVgT~SIe~SE~ls~~L~~~---------gi~h~vLNAk~~e~EA-~IIa--~AG~~GaVT 478 (925)
T PRK12903 413 KAVVKEVKRVHK--KGQPILIGTAQVEDSETLHELLLEA---------NIPHTVLNAKQNAREA-EIIA--KAGQKGAIT 478 (925)
T ss_pred HHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC---------CCCceeecccchhhHH-HHHH--hCCCCCeEE
Confidence 344444544553 4789999999999999999999875 4555556665332222 2332 234 35699
Q ss_pred EeCCCccccCcCCCeE--------EEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 281 LATNIAETSLTIDGIK--------YVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 281 vaT~i~e~gidip~v~--------~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
||||+|++|.||.--. +||-+ ..+.|..-=.|-.||+||.| ||.+-.+.+-++
T Consensus 479 IATNMAGRGTDI~Lg~~V~~~GGLhVIgT------------------erheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 479 IATNMAGRGTDIKLSKEVLELGGLYVLGT------------------DKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred EecccccCCcCccCchhHHHcCCcEEEec------------------ccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 9999999999996222 55642 23566666679999999999 887666555443
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.30 E-value=4.7e-11 Score=133.79 Aligned_cols=136 Identities=12% Similarity=0.031 Sum_probs=89.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhC-CccCcEeeee---ecc---cccCCCCc
Q 041899 28 VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMG-VKLGHEVGYS---IRF---EDCTSEKT 100 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~-~~~g~~vg~~---~~~---~~~~~~~~ 100 (650)
.+..+.+|||||..+..++.+. +..++.+++++|...++.|+.+++.+.+| ..+....... .++ ........
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~-l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAAT-LRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHH-HHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 3455557999997776666554 44577899999999999999999999887 4332221100 011 11133557
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCcccc------HHHHHHHHHHhcCCCceEEEEccCCChHHHHhh
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTD------ILLGIFKDLVRLRSDLKLLISSATLDAEKFSAY 172 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d------~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 172 (650)
+|+++|-.-++- -+.++++|||||-|+-+...+ .-. +........+.++|+.|||+..+.+...
T Consensus 242 ~IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRd--vA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 242 RVVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHARE--VALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred cEEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHH--HHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 888988653321 378899999999995433322 111 1112224467899999999998887653
No 142
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.27 E-value=4.8e-12 Score=103.37 Aligned_cols=72 Identities=35% Similarity=0.502 Sum_probs=66.9
Q ss_pred ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHH
Q 041899 250 ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAM 329 (650)
Q Consensus 250 ~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~ 329 (650)
++.+..+||++++++|..+++.|++|..+|+++|+++++|+|+|+++.||.. ..+.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~------------------~~~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIY------------------DLPWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEe------------------CCCCCHHHHH
Confidence 6788999999999999999999999999999999999999999999999984 3378999999
Q ss_pred hhccccCCCC
Q 041899 330 QRAGRSGRTG 339 (650)
Q Consensus 330 Qr~GRaGR~~ 339 (650)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.26 E-value=2.4e-10 Score=127.92 Aligned_cols=125 Identities=18% Similarity=0.119 Sum_probs=77.4
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
++.+-++++-.+++-.+.=++.-|....||.|||..+.+..+-..+ .+..|-++.+..-||..-++.+...+ .-+|.+
T Consensus 70 ~R~lG~r~ydvQlig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-~G~~VhVvT~NdyLA~RD~e~m~pvy-~~LGLs 147 (870)
T CHL00122 70 FRTLGLRHFDVQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNAL-TGKGVHIVTVNDYLAKRDQEWMGQIY-RFLGLT 147 (870)
T ss_pred HHHhCCCCCchHhhhhHhhcCCccccccCCCCchHHHHHHHHHHHh-cCCceEEEeCCHHHHHHHHHHHHHHH-HHcCCc
Confidence 3445555555667776655666799999999999544433332223 35578888899999988777665432 123444
Q ss_pred eeeeecc----cccCCCCceEEEEChH-----HHHHHHhcCC---CCCCCceEEecccc
Q 041899 86 VGYSIRF----EDCTSEKTVLKYMTDG-----MVLREMLSDP---KLESYSVLMVDEAH 132 (650)
Q Consensus 86 vg~~~~~----~~~~~~~~~i~~~T~~-----~Ll~~l~~~~---~l~~~~~iIiDE~H 132 (650)
||..... +....-.++|+|+|+. .|...+...+ ..+.+.+.||||++
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvD 206 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVD 206 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecch
Confidence 5533221 1122345789999995 3333332222 35678899999999
No 144
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.25 E-value=3.1e-09 Score=125.26 Aligned_cols=140 Identities=20% Similarity=0.211 Sum_probs=89.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcE
Q 041899 199 NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARK 278 (650)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~k 278 (650)
+|.......+..+... .+|++|||+++.+..+.+++.|...... .++.+.. . ++....+.++.+.|+.++..
T Consensus 735 ~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~ 806 (928)
T PRK08074 735 EYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----EGYVLLA-Q-GVSSGSRARLTKQFQQFDKA 806 (928)
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhcccc-----cCceEEe-c-CCCCCCHHHHHHHHHhcCCe
Confidence 4455555555555443 4789999999999999999998764210 1222221 2 33333467778888888889
Q ss_pred EEEeCCCccccCcCCCe--EEEEeCCcccceeccC----------CCCcccc--eeeecCHHhHHhhccccCCCC--CcE
Q 041899 279 VVLATNIAETSLTIDGI--KYVVDSGYSKMKWYNP----------KTGMESL--LVYPISKASAMQRAGRSGRTG--PGK 342 (650)
Q Consensus 279 ilvaT~i~e~gidip~v--~~VId~G~~k~~~~d~----------~~~~~~l--~~~~~s~~~~~Qr~GRaGR~~--~G~ 342 (650)
||++|.....|||+|+- +.||..|+.-.+--|| ..|-+.+ +..|.....+.|-+||.=|.. .|.
T Consensus 807 iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~ 886 (928)
T PRK08074 807 ILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGT 886 (928)
T ss_pred EEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEE
Confidence 99999999999999974 7777766542211111 1121222 222445667899999999988 466
Q ss_pred EEEe
Q 041899 343 CFRL 346 (650)
Q Consensus 343 ~~~l 346 (650)
.+.|
T Consensus 887 v~il 890 (928)
T PRK08074 887 VFVL 890 (928)
T ss_pred EEEe
Confidence 5554
No 145
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.24 E-value=1.1e-09 Score=121.35 Aligned_cols=294 Identities=19% Similarity=0.197 Sum_probs=168.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCC--CCc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTS--EKT 100 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~--~~~ 100 (650)
....+.+|.+|.||||||.+-.++.+..-.++.+++++..|+.|+.+++.++... +. ...+-|....+.... ...
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l--~gFv~Y~d~~~~~i~~~~~~ 123 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GL--SGFVNYLDSDDYIIDGRPYD 123 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CC--CcceeeeccccccccccccC
Confidence 3567899999999999999888887653345679999999999999999999652 11 122222221111111 123
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEeccccc--CCcc------ccHHHHHHHHHHhcCCCceEEEEccCCChH---HH
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHE--RTLS------TDILLGIFKDLVRLRSDLKLLISSATLDAE---KF 169 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~He--r~~~------~d~ll~~l~~~~~~~~~~kii~~SAT~~~~---~~ 169 (650)
+++ +.-+.|.|. ..+.+.+|++|||||+-. ..+. ......+++.+++ ...++|+|-||++.. -+
T Consensus 124 rLi-vqIdSL~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~--~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 124 RLI-VQIDSLHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR--NAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred eEE-EEehhhhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH--hCCeEEEecCCCCHHHHHHH
Confidence 444 444555553 234688899999999981 0011 1122333444433 345899999999654 33
Q ss_pred HhhhCCCCccccCCc----ccce-eEEEecC-----------CCC-------------------chH--HHHHHHHHHHH
Q 041899 170 SAYFNFAPILRVPGR----RYPV-EIHYTKA-----------PES-------------------NYI--DAAIVTTLEIH 212 (650)
Q Consensus 170 ~~~~~~~~~~~~~~~----~~~v-~~~~~~~-----------~~~-------------------~~~--~~~~~~~~~~~ 212 (650)
+..-++.++..+.+. .|.- ...+.+. +.. .+. .......+..
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~- 277 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLA- 277 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHH-
Confidence 333333332222111 1100 0001000 000 000 0011111111
Q ss_pred hcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcC
Q 041899 213 ATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTI 292 (650)
Q Consensus 213 ~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidi 292 (650)
.-..+.+|-||+.|....+.+++..... ...+..++|.-+.. .+. .+ ++.+|++=|++...|+++
T Consensus 278 ~L~~gknIcvfsSt~~~~~~v~~~~~~~---------~~~Vl~l~s~~~~~---dv~-~W--~~~~VviYT~~itvG~Sf 342 (824)
T PF02399_consen 278 RLNAGKNICVFSSTVSFAEIVARFCARF---------TKKVLVLNSTDKLE---DVE-SW--KKYDVVIYTPVITVGLSF 342 (824)
T ss_pred HHhCCCcEEEEeChHHHHHHHHHHHHhc---------CCeEEEEcCCCCcc---ccc-cc--cceeEEEEeceEEEEecc
Confidence 1133678889999988888887776654 45566777765544 222 23 468999999999999999
Q ss_pred CCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCcccc
Q 041899 293 DGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 293 p~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 352 (650)
....+=-..++.|... .-.+..+..|+.||+-.......|..++....
T Consensus 343 ~~~HF~~~f~yvk~~~------------~gpd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMS------------YGPDMVSVYQMLGRVRSLLDNEIYVYIDASGA 390 (824)
T ss_pred chhhceEEEEEecCCC------------CCCcHHHHHHHHHHHHhhccCeEEEEEecccc
Confidence 7554322222221111 12456779999999988887877777665443
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=99.19 E-value=6.7e-11 Score=128.43 Aligned_cols=313 Identities=14% Similarity=0.155 Sum_probs=173.0
Q ss_pred CchHHHHHHHHHHH----cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc-
Q 041899 10 PIYHYREQVLRAVQ----ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH- 84 (650)
Q Consensus 10 pl~~~q~~~l~~l~----~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~- 84 (650)
.+++||++++++.. .|..-=+....|+|||+....+.-+. ...++++++|+..|..|..+.+..+-...+-.
T Consensus 161 k~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal---a~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~ 237 (1518)
T COG4889 161 KPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL---AAARILFLVPSISLLSQTLREWTAQKELDFRAS 237 (1518)
T ss_pred CCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH---hhhheEeecchHHHHHHHHHHHhhccCccceeE
Confidence 47899999998864 34444555678999996554433222 12589999999999999988876643222110
Q ss_pred ------Eee------------eeecc----------cccCCCCceEEEEChHHHHHHHh-cCCCCCCCceEEecccccCC
Q 041899 85 ------EVG------------YSIRF----------EDCTSEKTVLKYMTDGMVLREML-SDPKLESYSVLMVDEAHERT 135 (650)
Q Consensus 85 ------~vg------------~~~~~----------~~~~~~~~~i~~~T~~~Ll~~l~-~~~~l~~~~~iIiDE~Her~ 135 (650)
.|+ +.+.- .......--++|+|.+.+.+.-. ....+..+++||.||+| |+
T Consensus 238 aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH-RT 316 (1518)
T COG4889 238 AVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH-RT 316 (1518)
T ss_pred EEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh-cc
Confidence 011 00000 00011233588999988765322 22358889999999999 43
Q ss_pred ccccHHHH---HHHHHHh--cCCCceEEEEccCCCh--HHHHhhhC--CC------------CccccCC----------c
Q 041899 136 LSTDILLG---IFKDLVR--LRSDLKLLISSATLDA--EKFSAYFN--FA------------PILRVPG----------R 184 (650)
Q Consensus 136 ~~~d~ll~---~l~~~~~--~~~~~kii~~SAT~~~--~~~~~~~~--~~------------~~~~~~~----------~ 184 (650)
...-..-. -+.++.. .-+..|.+.|+||+.. +....--. .. +.++.-| .
T Consensus 317 tGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLT 396 (1518)
T COG4889 317 TGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLT 396 (1518)
T ss_pred ccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhc
Confidence 32110000 0000000 0012466889999721 11111000 00 0000000 0
Q ss_pred ccceeEEEe-------------cCCCCchHHHHHHHHHHHH----hcC--------------CCCCEEEEeCCHHHHHHH
Q 041899 185 RYPVEIHYT-------------KAPESNYIDAAIVTTLEIH----ATQ--------------ASGDILVFLTGQEEIETV 233 (650)
Q Consensus 185 ~~~v~~~~~-------------~~~~~~~~~~~~~~~~~~~----~~~--------------~~~~iLVF~~~~~~i~~~ 233 (650)
.|.|-+.-. ..+...........++-.+ ... +..+.+-||.+.++-..+
T Consensus 397 DYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i 476 (1518)
T COG4889 397 DYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQI 476 (1518)
T ss_pred cceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHH
Confidence 011111110 1111111111111111111 000 112457899888888887
Q ss_pred HHHHHHHHH----hhcCCCCce--EEEeecCCCCHHHHhhhcC---CCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcc
Q 041899 234 EEILKERIR----KLGTKIGEL--IVCPVYANLPTELQAKIFV---PTPDGARKVVLATNIAETSLTIDGIKYVVDSGYS 304 (650)
Q Consensus 234 ~~~L~~~~~----~~~~~~~~~--~v~~lh~~l~~~~r~~i~~---~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~ 304 (650)
++.+.+... ++..+..++ .+-.+.|.|..-+|..... .|++.+.|||----.+..|||+|..+-||-
T Consensus 477 ~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF---- 552 (1518)
T COG4889 477 AESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF---- 552 (1518)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----
Confidence 777665432 222333344 4445568898888865443 567888999998899999999999999995
Q ss_pred cceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEE
Q 041899 305 KMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCF 344 (650)
Q Consensus 305 k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~ 344 (650)
||| ..|....+|-.||+.|..+|+-|
T Consensus 553 ----f~p----------r~smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 553 ----FDP----------RSSMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred ----ecC----------chhHHHHHHHHHHHHHhCcCCcc
Confidence 444 46677899999999999988744
No 147
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=2.5e-09 Score=119.62 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=79.8
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
|+.|-+.+|--+++-++.=++--|....||-|||..+.+..+-..+. +..|-++.+..-||..=++.+...+. -+|.+
T Consensus 79 ~R~lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-GkgVhVVTvNdYLA~RDae~m~~vy~-~LGLt 156 (939)
T PRK12902 79 KRVLGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-GKGVHVVTVNDYLARRDAEWMGQVHR-FLGLS 156 (939)
T ss_pred HHHhCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-CCCeEEEeCCHHHHHhHHHHHHHHHH-HhCCe
Confidence 45566667777777776555666999999999996554444433343 44677777888888776666554321 23445
Q ss_pred eeeeec----ccccCCCCceEEEEChHHH-----HHHHhcCC---CCCCCceEEecccc
Q 041899 86 VGYSIR----FEDCTSEKTVLKYMTDGMV-----LREMLSDP---KLESYSVLMVDEAH 132 (650)
Q Consensus 86 vg~~~~----~~~~~~~~~~i~~~T~~~L-----l~~l~~~~---~l~~~~~iIiDE~H 132 (650)
||.... .+.+..-.++|+|+|+.-| ...+..++ ..+.+.+.||||++
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvD 215 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVD 215 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccc
Confidence 553322 1222334689999999654 44444322 46778899999999
No 148
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.12 E-value=5.7e-08 Score=107.84 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCC----C
Q 041899 200 YIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPD----G 275 (650)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~----g 275 (650)
+.+.....+..+.. ..+|.+||.+++...++.+++.|...+ .+ .+.+.|..+. +...++.|+. |
T Consensus 454 ~~~~~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l--------~~-~~l~qg~~~~--~~~l~~~f~~~~~~~ 521 (636)
T TIGR03117 454 WLENVSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGI--------PA-EIVIQSEKNR--LASAEQQFLALYANG 521 (636)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhc--------CC-CEEEeCCCcc--HHHHHHHHHHhhcCC
Confidence 44444555555544 347899999999999999999997653 12 2334565432 2234444543 5
Q ss_pred CcEEEEeCCCccccCcC----------CCeEEEEeCCcccceeccCC--------CCcccceeeecCHHhHHhhccccCC
Q 041899 276 ARKVVLATNIAETSLTI----------DGIKYVVDSGYSKMKWYNPK--------TGMESLLVYPISKASAMQRAGRSGR 337 (650)
Q Consensus 276 ~~kilvaT~i~e~gidi----------p~v~~VId~G~~k~~~~d~~--------~~~~~l~~~~~s~~~~~Qr~GRaGR 337 (650)
...||++|+.+-+|||+ +.++.||..-+.-.. -||- .|-..+...|...-.+.|-+||.=|
T Consensus 522 ~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR 600 (636)
T TIGR03117 522 IQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVR 600 (636)
T ss_pred CCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceee
Confidence 78999999999999999 246677654332111 1221 2222222334445667899999988
Q ss_pred CC----CcEEEEee
Q 041899 338 TG----PGKCFRLY 347 (650)
Q Consensus 338 ~~----~G~~~~l~ 347 (650)
.. .|....|=
T Consensus 601 ~~~D~~~G~i~ilD 614 (636)
T TIGR03117 601 HPDMPQNRRIHMLD 614 (636)
T ss_pred cCCCcCceEEEEEe
Confidence 75 35444443
No 149
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.11 E-value=4.3e-09 Score=113.76 Aligned_cols=312 Identities=19% Similarity=0.227 Sum_probs=182.2
Q ss_pred CchHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHH--HhcccCCCCeEEEecchHHHHHHHHHHHHHHh-CCcc
Q 041899 10 PIYHYREQVLRAV----QENQVVVIVGETGSGKTTQIPQYL--HEAGYTKHGKVGCTQPRRVAAISVAARVSREM-GVKL 82 (650)
Q Consensus 10 pl~~~q~~~l~~l----~~~~~vii~apTGsGKT~~ip~~l--~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~-~~~~ 82 (650)
.+.+||-+-++.+ .++-+.|+.-.-|-|||.|-..++ +.....-.|.-+|++|.-.|.+ ..+.+++.. +.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l~~ 245 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTPSLNV 245 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCCCcce
Confidence 4778998888775 366779999999999995543332 2222233568899999877653 333444422 2222
Q ss_pred CcEeeee-----ecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHH-HHHHHHhcCCCce
Q 041899 83 GHEVGYS-----IRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLG-IFKDLVRLRSDLK 156 (650)
Q Consensus 83 g~~vg~~-----~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~-~l~~~~~~~~~~k 156 (650)
-..+|-. ..-+-.......|+++|.+|.++.-.- -.--.+.++||||+| |--+....+. .++.+ .-..
T Consensus 246 ~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~-lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f----~~~n 319 (971)
T KOG0385|consen 246 VVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF-LKKFNWRYLVIDEAH-RIKNEKSKLSKILREF----KTDN 319 (971)
T ss_pred EEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH-HhcCCceEEEechhh-hhcchhhHHHHHHHHh----cccc
Confidence 2233311 011111234778999999998874110 011246899999999 6555443333 33332 2234
Q ss_pred EEEEccCC---C------------------hHHHHhhhCCCCc-----------------c------ccCCccccee--E
Q 041899 157 LLISSATL---D------------------AEKFSAYFNFAPI-----------------L------RVPGRRYPVE--I 190 (650)
Q Consensus 157 ii~~SAT~---~------------------~~~~~~~~~~~~~-----------------~------~~~~~~~~v~--~ 190 (650)
-++++.|+ | .+.|.+||..... + .+....-|-+ +
T Consensus 320 rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~ 399 (971)
T KOG0385|consen 320 RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELI 399 (971)
T ss_pred eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceee
Confidence 57778886 2 2345666652100 0 0000000100 1
Q ss_pred EEecCCC--Cc----------------------hHHH--------------------------------------HHHHH
Q 041899 191 HYTKAPE--SN----------------------YIDA--------------------------------------AIVTT 208 (650)
Q Consensus 191 ~~~~~~~--~~----------------------~~~~--------------------------------------~~~~~ 208 (650)
.|..... .+ .+.. .+..+
T Consensus 400 iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkL 479 (971)
T KOG0385|consen 400 IYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKL 479 (971)
T ss_pred EeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHH
Confidence 1111000 00 0000 01111
Q ss_pred HHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC---CcEEEEeCCC
Q 041899 209 LEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG---ARKVVLATNI 285 (650)
Q Consensus 209 ~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g---~~kilvaT~i 285 (650)
+.-. ...+.+||||.. .-.+-..|...+.. .++..+-+.|+++.++|...++.|... +.-.+++|-+
T Consensus 480 L~~L-k~~GhRVLIFSQ----mt~mLDILeDyc~~-----R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 480 LPKL-KEQGHRVLIFSQ----MTRMLDILEDYCML-----RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred HHHH-HhCCCeEEEeHH----HHHHHHHHHHHHHh-----cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 1111 123668999953 44444555554432 378889999999999999999888643 4557899999
Q ss_pred ccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccc
Q 041899 286 AETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQ 353 (650)
Q Consensus 286 ~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 353 (650)
.+-|||+-..+.||- ||..=+ |..--++++|+-|.|-..+=.+|||+++...+
T Consensus 550 GGLGINL~aADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 550 GGLGINLTAADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cccccccccccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 999999999999985 444322 45556788888888888899999999987654
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.05 E-value=2.5e-08 Score=110.98 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=68.2
Q ss_pred ceEEEeecCCCCHHHHhhhcCCCCCC--C-cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHH
Q 041899 250 ELIVCPVYANLPTELQAKIFVPTPDG--A-RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKA 326 (650)
Q Consensus 250 ~~~v~~lh~~l~~~~r~~i~~~~~~g--~-~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~ 326 (650)
+..++.+||.++..+|+++.+.|.+. . .-.+.+|-+.+.||++-+...||. .+..-+++
T Consensus 619 g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil------------------~D~dWNPa 680 (776)
T KOG0390|consen 619 GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL------------------FDPDWNPA 680 (776)
T ss_pred CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE------------------eCCCCCch
Confidence 78899999999999999999999643 2 345667788899999988888886 44456778
Q ss_pred hHHhhccccCCCC---CcEEEEeeCccccc
Q 041899 327 SAMQRAGRSGRTG---PGKCFRLYTINSYQ 353 (650)
Q Consensus 327 ~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 353 (650)
.=.|-++||=|.| +-..|+|.+...-+
T Consensus 681 ~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 681 VDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred hHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 8888889998888 56678887765543
No 151
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.02 E-value=4.3e-08 Score=106.70 Aligned_cols=310 Identities=16% Similarity=0.201 Sum_probs=186.9
Q ss_pred chHHHHHHHHHHH----cCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 11 IYHYREQVLRAVQ----ENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 11 l~~~q~~~l~~l~----~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
+++||++.++.+. ++.--|+--.-|-|||-|+..++...... -.+.+++++|.-++ .|..+.++.-+ ...-.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii-~qW~~E~~~w~-p~~rv 283 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATII-HQWMKEFQTWW-PPFRV 283 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHH-HHHHHHHHHhC-cceEE
Confidence 7999999999874 44557889999999998877776533111 12589999997654 45565664422 22211
Q ss_pred Eeeeeec-----------------ccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEeccccc-CCccccHHHHHH
Q 041899 85 EVGYSIR-----------------FEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHE-RTLSTDILLGIF 145 (650)
Q Consensus 85 ~vg~~~~-----------------~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~He-r~~~~d~ll~~l 145 (650)
.+.+... ..........|+++|...+. +..++ .-..++++|+||.|. |..+++..++..
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r--~~~d~l~~~~W~y~ILDEGH~IrNpns~islack 361 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR--IQGDDLLGILWDYVILDEGHRIRNPNSKISLACK 361 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc--ccCcccccccccEEEecCcccccCCccHHHHHHH
Confidence 1111110 11122234567777776542 22333 234579999999994 777887776665
Q ss_pred HHHHhcCCCceEEEEccCC---ChHHHHhhhC--------CCCcc--------ccCCc----------------------
Q 041899 146 KDLVRLRSDLKLLISSATL---DAEKFSAYFN--------FAPIL--------RVPGR---------------------- 184 (650)
Q Consensus 146 ~~~~~~~~~~kii~~SAT~---~~~~~~~~~~--------~~~~~--------~~~~~---------------------- 184 (650)
+. +..+.|+||.|+ +...+-+.|. ..|++ .+.|.
T Consensus 362 ki-----~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 362 KI-----RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred hc-----cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 43 345678899998 3333332221 11110 00000
Q ss_pred ---------------ccc---eeEEEec-----------------------------------------------C--C-
Q 041899 185 ---------------RYP---VEIHYTK-----------------------------------------------A--P- 196 (650)
Q Consensus 185 ---------------~~~---v~~~~~~-----------------------------------------------~--~- 196 (650)
..| -.+.|.. . .
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 000 0011100 0 0
Q ss_pred --CCch--------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHh
Q 041899 197 --ESNY--------IDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQA 266 (650)
Q Consensus 197 --~~~~--------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 266 (650)
..++ .-..+..++..... .+.++|+|..++....-+...|... .++..+.+.|..+...|.
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~--------~~ysylRmDGtT~~~~R~ 587 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRA--------KGYSYLRMDGTTPAALRQ 587 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhc--------CCceEEEecCCCccchhh
Confidence 0011 11122223333232 2568999999888777776666531 378899999999999999
Q ss_pred hhcCCCCCCC--cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEE
Q 041899 267 KIFVPTPDGA--RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCF 344 (650)
Q Consensus 267 ~i~~~~~~g~--~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~ 344 (650)
...+.|.++. .-.|++|-+.+-|+|+-+.+-||. |||.=+ |.+-.++.-|+=|-|-...=.+|
T Consensus 588 ~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 588 KLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHHhhcCCCceEEEEEEecccccccccccCceEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEE
Confidence 9999998776 336788999999999998888886 666422 44445555666666655556799
Q ss_pred EeeCccccc
Q 041899 345 RLYTINSYQ 353 (650)
Q Consensus 345 ~l~~~~~~~ 353 (650)
||.+....+
T Consensus 653 RL~t~gTIE 661 (923)
T KOG0387|consen 653 RLMTAGTIE 661 (923)
T ss_pred EEecCCcHH
Confidence 998876654
No 152
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.90 E-value=3.7e-08 Score=111.67 Aligned_cols=317 Identities=18% Similarity=0.219 Sum_probs=179.6
Q ss_pred cCCCchHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHh--cccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 7 KTLPIYHYREQVLRAV----QENQVVVIVGETGSGKTTQIPQYLHE--AGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l----~~~~~vii~apTGsGKT~~ip~~l~~--~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
+.+-++.||-+-++.+ ..++++|+.-+-|-|||.|-.-++.. ....-.|..+|++|.-.+. ...+.+..-...
T Consensus 367 ~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~~w~~m 445 (1373)
T KOG0384|consen 367 GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFETWTDM 445 (1373)
T ss_pred ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHHHHhhh
Confidence 3467889998887775 47899999999999999554333322 2222346788888976543 233334333333
Q ss_pred ccCcEee----------eeeccccc-CCCCceEEEEChHHHHHHHhcCCCCCC--CceEEecccccCCccccHHHH-HHH
Q 041899 81 KLGHEVG----------YSIRFEDC-TSEKTVLKYMTDGMVLREMLSDPKLES--YSVLMVDEAHERTLSTDILLG-IFK 146 (650)
Q Consensus 81 ~~g~~vg----------~~~~~~~~-~~~~~~i~~~T~~~Ll~~l~~~~~l~~--~~~iIiDE~Her~~~~d~ll~-~l~ 146 (650)
++-...| |....... ..-..+++++|.++++. ..+.|++ +.+++||||| |--+.+..+. .+.
T Consensus 446 n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk---Dk~~L~~i~w~~~~vDeah-rLkN~~~~l~~~l~ 521 (1373)
T KOG0384|consen 446 NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK---DKAELSKIPWRYLLVDEAH-RLKNDESKLYESLN 521 (1373)
T ss_pred ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc---cHhhhccCCcceeeecHHh-hcCchHHHHHHHHH
Confidence 3333333 22222221 11246788999999875 2234444 5799999999 6665544332 233
Q ss_pred HHHhcCCCceEEEEccCC---ChHHHHhhhC---CC----------------------------Cccc------cCCccc
Q 041899 147 DLVRLRSDLKLLISSATL---DAEKFSAYFN---FA----------------------------PILR------VPGRRY 186 (650)
Q Consensus 147 ~~~~~~~~~kii~~SAT~---~~~~~~~~~~---~~----------------------------~~~~------~~~~~~ 186 (650)
.+ . --.-++++.|+ +.+.+...+. .. |.+. ++...-
T Consensus 522 ~f---~-~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp 597 (1373)
T KOG0384|consen 522 QF---K-MNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLP 597 (1373)
T ss_pred Hh---c-ccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCC
Confidence 22 2 22347778887 4444433221 00 0000 000000
Q ss_pred -------ceeE------EEec--------------CCCCc------------------------hHH--------HHHHH
Q 041899 187 -------PVEI------HYTK--------------APESN------------------------YID--------AAIVT 207 (650)
Q Consensus 187 -------~v~~------~~~~--------------~~~~~------------------------~~~--------~~~~~ 207 (650)
.|+. +|.. .+... +.. ..+..
T Consensus 598 ~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~ 677 (1373)
T KOG0384|consen 598 PKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQA 677 (1373)
T ss_pred CCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHH
Confidence 0000 0000 00000 000 11111
Q ss_pred HHH----------H--HhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCC-
Q 041899 208 TLE----------I--HATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPD- 274 (650)
Q Consensus 208 ~~~----------~--~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~- 274 (650)
++. + .....+.+||||..=.....-++++|..+ ++..--+.|+++.+.|+.+++.|..
T Consensus 678 lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r---------~ypfQRLDGsvrgelRq~AIDhFnap 748 (1373)
T KOG0384|consen 678 LIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR---------GYPFQRLDGSVRGELRQQAIDHFNAP 748 (1373)
T ss_pred HHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc---------CCcceeccCCcchHHHHHHHHhccCC
Confidence 111 0 01223578999977666666666666654 6777888999999999999988853
Q ss_pred --CCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCcccc
Q 041899 275 --GARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 275 --g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 352 (650)
...-.|+||-+.+-|||+-..+.||. ||..=+ |-+--+++=|+-|.|-...=.+|||+++..+
T Consensus 749 ~SddFvFLLSTRAGGLGINLatADTVII--------FDSDWN-------PQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 749 DSDDFVFLLSTRAGGLGINLATADTVII--------FDSDWN-------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred CCCceEEEEecccCcccccccccceEEE--------eCCCCC-------cchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 34779999999999999998888876 333211 2333334444444444334569999999998
Q ss_pred cccc
Q 041899 353 QEDM 356 (650)
Q Consensus 353 ~~~~ 356 (650)
++.+
T Consensus 814 EeEi 817 (1373)
T KOG0384|consen 814 EEEI 817 (1373)
T ss_pred HHHH
Confidence 7543
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.86 E-value=5.6e-07 Score=103.44 Aligned_cols=136 Identities=18% Similarity=0.175 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCc-
Q 041899 199 NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGAR- 277 (650)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~- 277 (650)
+........+..+.... +|++|||+|+.+..+.+++.+.... .......++..+.+ ..++.|..+.-
T Consensus 462 ~~~~~~~~~i~~~~~~~-~~~~lvlF~Sy~~l~~~~~~~~~~~--------~~~~v~~q~~~~~~---~~l~~f~~~~~~ 529 (654)
T COG1199 462 ELLAKLAAYLREILKAS-PGGVLVLFPSYEYLKRVAERLKDER--------STLPVLTQGEDERE---ELLEKFKASGEG 529 (654)
T ss_pred HHHHHHHHHHHHHHhhc-CCCEEEEeccHHHHHHHHHHHhhcC--------ccceeeecCCCcHH---HHHHHHHHhcCC
Confidence 45555555555555544 5699999999999999999887641 11244556666655 34444443333
Q ss_pred EEEEeCCCccccCcCCCe--EEEEeCCcccceeccC----------CCCcc--cceeeecCHHhHHhhccccCCCC--Cc
Q 041899 278 KVVLATNIAETSLTIDGI--KYVVDSGYSKMKWYNP----------KTGME--SLLVYPISKASAMQRAGRSGRTG--PG 341 (650)
Q Consensus 278 kilvaT~i~e~gidip~v--~~VId~G~~k~~~~d~----------~~~~~--~l~~~~~s~~~~~Qr~GRaGR~~--~G 341 (650)
-++|+|..+..|||+|+= +.||..|+.-..--|| ..|.. .....|.......|-+||+=|.. .|
T Consensus 530 ~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G 609 (654)
T COG1199 530 LILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRG 609 (654)
T ss_pred eEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCce
Confidence 899999999999999865 6677666543322222 22211 11344566778899999999976 46
Q ss_pred EEEEe
Q 041899 342 KCFRL 346 (650)
Q Consensus 342 ~~~~l 346 (650)
.++.|
T Consensus 610 ~ivll 614 (654)
T COG1199 610 VIVLL 614 (654)
T ss_pred EEEEe
Confidence 66665
No 154
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.72 E-value=1.6e-06 Score=89.93 Aligned_cols=268 Identities=18% Similarity=0.195 Sum_probs=150.6
Q ss_pred chHHHHHHHH-HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeee
Q 041899 11 IYHYREQVLR-AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYS 89 (650)
Q Consensus 11 l~~~q~~~l~-~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~ 89 (650)
+.++|.+-+. ++..+..+++.-.-|-|||.|+..+... +.....+++++|--.. ...++.+...++.-.-..+ .
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~y--yraEwplliVcPAsvr-ftWa~al~r~lps~~pi~v--v 273 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARY--YRAEWPLLIVCPASVR-FTWAKALNRFLPSIHPIFV--V 273 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHH--HhhcCcEEEEecHHHh-HHHHHHHHHhcccccceEE--E
Confidence 5678887665 4788899999999999999776433221 3345578999995432 3444445444443221111 1
Q ss_pred eccccc---CCCCceEEEEChHHHHHHHhcCCC-CCCCceEEeccccc-CC---ccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 90 IRFEDC---TSEKTVLKYMTDGMVLREMLSDPK-LESYSVLMVDEAHE-RT---LSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 90 ~~~~~~---~~~~~~i~~~T~~~Ll~~l~~~~~-l~~~~~iIiDE~He-r~---~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+..+. ......|.+++.+++... .+-. -..+.+||+||.|. ++ -.+.....+++. -.++|++|
T Consensus 274 ~~~~D~~~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~------akhvILLS 345 (689)
T KOG1000|consen 274 DKSSDPLPDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKV------AKHVILLS 345 (689)
T ss_pred ecccCCccccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHH------hhheEEec
Confidence 111111 112346778888876431 1112 23489999999992 22 222223333332 24699999
Q ss_pred cCCC----hHHHHh-------hhCCC---CccccCCcccc---------------------------------------e
Q 041899 162 ATLD----AEKFSA-------YFNFA---PILRVPGRRYP---------------------------------------V 188 (650)
Q Consensus 162 AT~~----~~~~~~-------~~~~~---~~~~~~~~~~~---------------------------------------v 188 (650)
.|+. .+.+.. +|.+- ..-..+|+..+ -
T Consensus 346 GTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr 425 (689)
T KOG1000|consen 346 GTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRR 425 (689)
T ss_pred CCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccce
Confidence 9983 222111 00000 00000111111 1
Q ss_pred eEEEecCCCC-----chHHHH---------------------------HHHHHHHH------hcCCCCCEEEEeCCHHHH
Q 041899 189 EIHYTKAPES-----NYIDAA---------------------------IVTTLEIH------ATQASGDILVFLTGQEEI 230 (650)
Q Consensus 189 ~~~~~~~~~~-----~~~~~~---------------------------~~~~~~~~------~~~~~~~iLVF~~~~~~i 230 (650)
++.|...... +.+.+. +..+.+.. ...++.+.+||+....-.
T Consensus 426 ~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vL 505 (689)
T KOG1000|consen 426 EVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVL 505 (689)
T ss_pred EEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHH
Confidence 2222221111 000000 01111111 223457899999998888
Q ss_pred HHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCC-cE-EEEeCCCccccCcCCCeEEEEe
Q 041899 231 ETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGA-RK-VVLATNIAETSLTIDGIKYVVD 300 (650)
Q Consensus 231 ~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~-~k-ilvaT~i~e~gidip~v~~VId 300 (650)
+.+...+.++ ++..+-+.|..+..+|...-+.|...+ .+ -|++-.++.+|+|+...+.||-
T Consensus 506 d~Iq~~~~~r---------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVF 568 (689)
T KOG1000|consen 506 DTIQVEVNKR---------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVF 568 (689)
T ss_pred HHHHHHHHHc---------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEE
Confidence 8888877765 677788899999999999988887443 33 4667778999999999998884
No 155
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.53 E-value=3.4e-06 Score=99.32 Aligned_cols=131 Identities=20% Similarity=0.078 Sum_probs=81.7
Q ss_pred CeEEEEcCCCChHH-HHH--HHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee-eec--ccccCCCC
Q 041899 26 QVVVIVGETGSGKT-TQI--PQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY-SIR--FEDCTSEK 99 (650)
Q Consensus 26 ~~vii~apTGsGKT-~~i--p~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~-~~~--~~~~~~~~ 99 (650)
+..+|.--|||||| |.+ ...+.+. ....+|++++-|+.|-.|+.+.+...- ........- ... .+......
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~-~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFG-KVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHH-HhhhhcccccCHHHHHHHHhcCC
Confidence 45899999999999 332 2333333 445699999999999999998886632 211110000 000 00011235
Q ss_pred ceEEEEChHHHHHHHhcC-C--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 100 TVLKYMTDGMVLREMLSD-P--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 100 ~~i~~~T~~~Ll~~l~~~-~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
..|+++|-+.|-...... + .-.+-=+||+|||| |+..+... ..++. ..++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G~~~-~~~~~---~~~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYGELA-KLLKK---ALKKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hccccHHH-HHHHH---HhccceEEEeeCCc
Confidence 689999998876655443 1 12223478999999 88776543 33333 34557899999999
No 156
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.45 E-value=5.6e-06 Score=94.24 Aligned_cols=112 Identities=22% Similarity=0.297 Sum_probs=81.7
Q ss_pred CCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC-CcEEE-EeCCCccccCcCCCe
Q 041899 218 GDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-ARKVV-LATNIAETSLTIDGI 295 (650)
Q Consensus 218 ~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~kil-vaT~i~e~gidip~v 295 (650)
.++||||.-+..+.-+.+-|.+.. .+.+.-..+.|+.++.+|.++.+.|.++ .++|+ ++|-+.+-|+|+-+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~------mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGA 1414 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY------MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGA 1414 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh------cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCC
Confidence 479999999888888877775542 3466667889999999999999999988 67765 567899999999999
Q ss_pred EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccccc
Q 041899 296 KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQ 353 (650)
Q Consensus 296 ~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 353 (650)
+.||-. +--||| ..=.|-+-||-|-| .=.+|||+++...+
T Consensus 1415 DTVVFv----EHDWNP--------------MrDLQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1415 DTVVFV----EHDWNP--------------MRDLQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred ceEEEE----ecCCCc--------------hhhHHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 999851 111222 22255555555555 34478888776653
No 157
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.39 E-value=2e-06 Score=88.78 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=71.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh--cccCC--CCeEEEecchHHHHHHHHHHHHHHhCC-ccCcEeeeeecc-----c
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE--AGYTK--HGKVGCTQPRRVAAISVAARVSREMGV-KLGHEVGYSIRF-----E 93 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~--~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~~-~~g~~vg~~~~~-----~ 93 (650)
..+..++.-++|+|||.++..++.. ..... .+.++|++|. .+..+....+.+.... .. ..+-+.-.. .
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-ccccccccccccccc
Confidence 4567899999999999665555442 11111 1259999999 6667888888776532 22 222221111 1
Q ss_pred ccCCCCceEEEEChHHHH--------HHHhcCCCCCCCceEEecccccC-CccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 94 DCTSEKTVLKYMTDGMVL--------REMLSDPKLESYSVLMVDEAHER-TLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 94 ~~~~~~~~i~~~T~~~Ll--------~~l~~~~~l~~~~~iIiDE~Her-~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
........++++|.+.+. ..+.. -++++||+||+|.- +..+.... .+. ... ....++||||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~~s~~~~-~l~---~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNKDSKRYK-ALR---KLR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTTTSHHHH-HHH---CCC-ECEEEEE-SS-
T ss_pred ccccccceeeecccccccccccccccccccc----ccceeEEEecccccccccccccc-ccc---ccc-cceEEeecccc
Confidence 223456789999999887 11111 34899999999953 33332222 222 222 55778899998
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.36 E-value=2.4e-06 Score=97.31 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=104.9
Q ss_pred eEEEEccCC--ChHHHHhhhCCCCccccCCcccce-----eEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 156 KLLISSATL--DAEKFSAYFNFAPILRVPGRRYPV-----EIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 156 kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
++-+||.|. ....|.+.++ -+++.+|....-. +..|. ...+...+.+..+...+. .+.+|||-+.+.+
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~-L~Vv~IPTnrP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~--~GrPVLVGT~SVe 639 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK-LDVVVIPTNRPIARKDKEDLVYK--TKREKYNAVIEEITELSE--AGRPVLVGTTSVE 639 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC-CCEEECCCCCCcceecCCCeEec--CHHHHHHHHHHHHHHHHH--CCCCEEEEeCcHH
Confidence 688899998 3445666554 4566665432111 11221 122344566666766765 3789999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC--------CeEEEEe
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID--------GIKYVVD 300 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip--------~v~~VId 300 (650)
..+.+++.|... ++..-.|++.....|-.-|-++-.. -.|-||||+|++|-||. +=-+||-
T Consensus 640 ~SE~lS~~L~~~---------gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIg 708 (1112)
T PRK12901 640 ISELLSRMLKMR---------KIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIG 708 (1112)
T ss_pred HHHHHHHHHHHc---------CCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCCEEEE
Confidence 999999999875 4444445554333333333333333 45899999999999996 2234553
Q ss_pred CCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 301 SGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 301 ~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
...+.|..--.|-.|||||.| ||.+-.+.+-++
T Consensus 709 ------------------TerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 709 ------------------TERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred ------------------ccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 234678888899999999999 898766665543
No 159
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=2e-06 Score=82.74 Aligned_cols=123 Identities=25% Similarity=0.321 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
+.+-|.+++..+..+ +..+|.||.|+||||.+-.+. +.....+.+|+++.|+..++..+.+.. +...
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g~~v~~~apT~~Aa~~L~~~~----~~~a------ 70 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALA-EALEAAGKRVIGLAPTNKAAKELREKT----GIEA------ 70 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT--EEEEESSHHHHHHHHHHH----TS-E------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHH-HHHHhCCCeEEEECCcHHHHHHHHHhh----Ccch------
Confidence 567899999998543 478999999999998765543 222234569999999999998876553 2111
Q ss_pred eecccccCCCCceEEEEChHHHHHHHhc-----CCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREMLS-----DPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
.|-..++..... .+.+...++|||||+- .+....+..+++.+.. .+.|+|++-=+
T Consensus 71 ----------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEas--mv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 71 ----------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEAS--MVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp ----------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGG--G-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ----------------hhHHHHHhcCCcccccccccCCcccEEEEeccc--ccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 111111110000 0115667899999998 5555555555544322 36788877655
Q ss_pred C
Q 041899 164 L 164 (650)
Q Consensus 164 ~ 164 (650)
-
T Consensus 131 ~ 131 (196)
T PF13604_consen 131 N 131 (196)
T ss_dssp T
T ss_pred c
Confidence 3
No 160
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.28 E-value=7.1e-07 Score=100.12 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=132.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeee---cccccCCCCc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSI---RFEDCTSEKT 100 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~---~~~~~~~~~~ 100 (650)
+.+.++-+|||+|||..+...+.... ..++.+++++.|.++|+.+..++....+..+ |..++-.. .-+-..-.++
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~ 1021 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREA 1021 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecC
Confidence 34578899999999977776665432 2345699999999999999998887766544 44333111 1111222467
Q ss_pred eEEEEChHHH---HHHHhcCCCCCCCceEEeccccc----CCccccHHHHHHHHH-HhcCCCceEEEEccCC-ChHHHHh
Q 041899 101 VLKYMTDGMV---LREMLSDPKLESYSVLMVDEAHE----RTLSTDILLGIFKDL-VRLRSDLKLLISSATL-DAEKFSA 171 (650)
Q Consensus 101 ~i~~~T~~~L---l~~l~~~~~l~~~~~iIiDE~He----r~~~~d~ll~~l~~~-~~~~~~~kii~~SAT~-~~~~~~~ 171 (650)
.++++|++.. .|.+.+...+.+++.+|+||.|. |+.-.+........+ ....+..+++++|--+ ++.++++
T Consensus 1022 ~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~ 1101 (1230)
T KOG0952|consen 1022 DIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLAD 1101 (1230)
T ss_pred ceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHH
Confidence 8999999754 44555556788999999999993 333332222222221 1133457788877655 8999999
Q ss_pred hhCCCCc--cccCCcccceeEEEecCCCCchHH---HHHHHHHHHH-hcCCCCCEEEEeCCHHHHHHHHHHHHH
Q 041899 172 YFNFAPI--LRVPGRRYPVEIHYTKAPESNYID---AAIVTTLEIH-ATQASGDILVFLTGQEEIETVEEILKE 239 (650)
Q Consensus 172 ~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~iLVF~~~~~~i~~~~~~L~~ 239 (650)
|++-.+. +...-+..|.++++...|..-|.. .+-....+.. ...+..++|||+.++......+..|..
T Consensus 1102 wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~ 1175 (1230)
T KOG0952|consen 1102 WLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIA 1175 (1230)
T ss_pred HhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHh
Confidence 9986554 222345556666665555422211 1111222222 334568999999988876666555544
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.27 E-value=1.2e-05 Score=90.31 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=74.3
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
++.+-.+++--+++-.+.-+..-|.-.-||=|||....+..+-..+..++.-++++.- =||.--++.+...+ .-+|.+
T Consensus 74 ~Rvlg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNd-YLA~RDae~m~~l~-~~LGls 151 (822)
T COG0653 74 KRVLGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVND-YLARRDAEWMGPLY-EFLGLS 151 (822)
T ss_pred HHhcCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehH-HhhhhCHHHHHHHH-HHcCCc
Confidence 4456667777778888877777899999999999554444444445555555555543 34333333333322 123455
Q ss_pred eeeeeccc----ccCCCCceEEEEChHHH-----HHHHhc---CCCCCCCceEEecccc
Q 041899 86 VGYSIRFE----DCTSEKTVLKYMTDGMV-----LREMLS---DPKLESYSVLMVDEAH 132 (650)
Q Consensus 86 vg~~~~~~----~~~~~~~~i~~~T~~~L-----l~~l~~---~~~l~~~~~iIiDE~H 132 (650)
||....+. ....-.++|+|.|+.-| ...+.. +.......+-|+||++
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvD 210 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVD 210 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchh
Confidence 55444333 33334678999998533 222222 2346678888888888
No 162
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.22 E-value=2.3e-05 Score=85.85 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=84.7
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCC--cEEEEeCCCccccCcCCC
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGA--RKVVLATNIAETSLTIDG 294 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~--~kilvaT~i~e~gidip~ 294 (650)
+.+||||..=.....-+-..|... ++...-+.|+..-.+|+.+++.|...+ .-.|++|-+.+.|||+-.
T Consensus 777 G~RVLiFSQFTqmLDILE~~L~~l---------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~ 847 (941)
T KOG0389|consen 777 GDRVLIFSQFTQMLDILEVVLDTL---------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTC 847 (941)
T ss_pred CCEEEEeeHHHHHHHHHHHHHHhc---------CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccc
Confidence 568899965433333333333332 788889999999999999999997554 457899999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCcccccc
Q 041899 295 IKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQE 354 (650)
Q Consensus 295 v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~ 354 (650)
.++||- ||-.- .|.+--++.-|+-|.|-+.|=.+|+|+++...++
T Consensus 848 An~VIi--------hD~dF-------NP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 848 ANTVII--------HDIDF-------NPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred cceEEE--------eecCC-------CCcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 998885 22211 1455667778888888888999999999887654
No 163
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.21 E-value=6.5e-05 Score=78.16 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=64.7
Q ss_pred CceEEEeecCCCCHHHHhhhcCCCCCCC--cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHH
Q 041899 249 GELIVCPVYANLPTELQAKIFVPTPDGA--RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKA 326 (650)
Q Consensus 249 ~~~~v~~lh~~l~~~~r~~i~~~~~~g~--~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~ 326 (650)
.++..+.+-|+|++..|...++.|.+.. +-.|++-.+.+..+|+-....|+. .+.|-+++
T Consensus 661 aGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFm------------------mDPWWNpa 722 (791)
T KOG1002|consen 661 AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFM------------------MDPWWNPA 722 (791)
T ss_pred cCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEe------------------ecccccHH
Confidence 3788999999999999999999998653 445666677778888888888886 55677777
Q ss_pred hHHhhcc---ccCCCCCcEEEEeeCcccc
Q 041899 327 SAMQRAG---RSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 327 ~~~Qr~G---RaGR~~~G~~~~l~~~~~~ 352 (650)
--+|-.. |.|-..|=++++++-++..
T Consensus 723 Ve~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 723 VEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred HHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 6666444 4444457788888766554
No 164
>PF13245 AAA_19: Part of AAA domain
Probab=98.18 E-value=4.5e-06 Score=66.70 Aligned_cols=54 Identities=28% Similarity=0.353 Sum_probs=41.6
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v 74 (650)
++.+++.++|.||+|||||+.+...+.+... ..+.+|+++.|++.++.++.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 5555777888999999999666665554321 12568999999999999999888
No 165
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.17 E-value=1.2e-05 Score=77.25 Aligned_cols=127 Identities=27% Similarity=0.366 Sum_probs=80.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCC--eEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHG--KVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~--~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
++++++||||+||||.+..+....... +. .++.+=..|+.|.++-+.+++.+|.++- ..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~-----~~~~~---------- 65 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFY-----VARTE---------- 65 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEE-----ESSTT----------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccc-----hhhcc----------
Confidence 468999999999998888776655444 33 3455667888888888899898875431 00000
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChHHHH
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAEKFS 170 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~ 170 (650)
..+..+++.......-+++++|+||-+. |+......+.-++.+.. ..+.-.+++||||...+.+.
T Consensus 66 -~~~~~~~~~~l~~~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 66 -SDPAEIAREALEKFRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -SCHHHHHHHHHHHHHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred -hhhHHHHHHHHHHHhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 0122223222222223568999999998 77666555566665555 45666788999999555443
No 166
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.16 E-value=1.8e-06 Score=77.35 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=64.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccC-----CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCC
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYT-----KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTS 97 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~ 97 (650)
++++.++|.||+|+|||+++..+....... ....+.+..|...-...++..+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 356789999999999999998887654211 22244555555555677777887777654321
Q ss_pred CCceEEEEChHHH----HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 98 EKTVLKYMTDGMV----LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 98 ~~~~i~~~T~~~L----l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
-.+...+ .+.+.... ..+|||||+|.-. . +..+..++.+.. ..++++|+.+-.
T Consensus 69 ------~~~~~~l~~~~~~~l~~~~----~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRRR----VVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHCT----EEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhcC----CeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 1222222 33332222 2699999999532 2 445555555544 566766665543
No 167
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.07 E-value=0.00057 Score=79.02 Aligned_cols=123 Identities=19% Similarity=0.211 Sum_probs=80.1
Q ss_pred CCCchHHHHHHHHHHHc-CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 8 TLPIYHYREQVLRAVQE-NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
...+.+.|.+++..+.. ++.++|+|++|+||||++-.++... ...+.+|+++.|+-.++..+. +..|..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~~~g~~V~~~ApTg~Aa~~L~----~~~g~~----- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-EAAGYRVIGAALSGKAAEGLQ----AESGIE----- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHH----hccCCc-----
Confidence 35688999999998876 5789999999999998876654322 223568999999987776554 222211
Q ss_pred eeeecccccCCCCceEEEEChHHHHHHHhc-CCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMVLREMLS-DPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~-~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
-.|-..++..+.. ...+...++|||||+- .+..+.+..+++... ..+.++|++.
T Consensus 420 -----------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEas--Mv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 420 -----------------SRTLASLEYAWANGRDLLSDKDVLVIDEAG--MVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred -----------------eeeHHHHHhhhccCcccCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 0122222211112 2246688999999998 566655555555432 2467777776
No 168
>PRK10536 hypothetical protein; Provisional
Probab=98.01 E-value=3e-05 Score=76.25 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=45.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEecchHH
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQPRRV 65 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~ 65 (650)
.-|....|...+.++.+++.+++.||+|||||+++-.+..+..... -.+++++-|...
T Consensus 57 i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 57 ILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred ccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 4688999999999999999999999999999988777666542222 236777777643
No 169
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.01 E-value=8e-06 Score=78.13 Aligned_cols=58 Identities=26% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHH
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVA 66 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~l 66 (650)
-|....|...++++.+.+.+++.||.|||||+++..+.++.... .-.+++++-|....
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 47889999999999999999999999999997776665554332 22389998886543
No 170
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.99 E-value=5.2e-05 Score=84.71 Aligned_cols=136 Identities=19% Similarity=0.259 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc--cCC--CCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 13 HYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG--YTK--HGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 13 ~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~~~--~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
++|++++.....++.++|+|++|+||||.+-.++.... ... +.+|+++.||--+|..+.+.+..... .++..
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 68888999999999999999999999987766543221 111 24799999999999888777654321 11100
Q ss_pred eecccccCCCCceEEEEChHHHHHHHh-------cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREML-------SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~-------~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
........+...|-..++..-. .......+++|||||+= +++...+..+++. ..++.|+|++.
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~a---l~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKA---LPPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHh---cCCCCEEEEEC
Confidence 0000000111223222222110 01123468999999997 6665555555543 45677877765
Q ss_pred c
Q 041899 162 A 162 (650)
Q Consensus 162 A 162 (650)
=
T Consensus 294 D 294 (586)
T TIGR01447 294 D 294 (586)
T ss_pred C
Confidence 3
No 171
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.97 E-value=0.00062 Score=79.87 Aligned_cols=126 Identities=21% Similarity=0.202 Sum_probs=81.3
Q ss_pred cCCCchHHHHHHHHHHHc-CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 7 KTLPIYHYREQVLRAVQE-NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~-~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
..+.+.+-|.+++..+.. ++.++|+|+.|+||||.+-.+ .+.....+.+|+.+.|+-.+|..+. +..|..
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~-~~~~e~~G~~V~~~ApTGkAA~~L~----e~tGi~---- 413 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVA-REAWEAAGYEVRGAALSGIAAENLE----GGSGIA---- 413 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HHHHHHcCCeEEEecCcHHHHHHHh----hccCcc----
Confidence 346789999999998876 567899999999999876433 3322223568999999988776544 211211
Q ss_pred eeeeecccccCCCCceEEEEChHHHHHHHh-cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 86 VGYSIRFEDCTSEKTVLKYMTDGMVLREML-SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 86 vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~-~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
-.|-..++..+. ....+...++|||||+- ++.+..+..+++... ..+.|+|++.=+
T Consensus 414 ------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~--~~garvVLVGD~ 470 (988)
T PRK13889 414 ------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAA--DAGAKVVLVGDP 470 (988)
T ss_pred ------------------hhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhh--hCCCEEEEECCH
Confidence 012222222111 12246677999999998 666666666655432 356788887654
No 172
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.95 E-value=1.5e-05 Score=85.24 Aligned_cols=64 Identities=19% Similarity=0.356 Sum_probs=51.4
Q ss_pred chHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHH
Q 041899 11 IYHYREQVLRAVQEN-QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 11 l~~~q~~~l~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
+.+.|.+++....++ ...+|.||+|+|||+.+..++... ..++.+|+|..|+.+++..+.+|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~ql-vk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQL-VKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHH-HHcCCeEEEEcCchHHHHHHHHHhc
Confidence 677899999887766 678999999999996555555444 3456799999999999999998754
No 173
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.94 E-value=8.4e-05 Score=85.48 Aligned_cols=125 Identities=23% Similarity=0.236 Sum_probs=80.6
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCC--CeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKH--GKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~--~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
....+.+.|.+++..+..++.++|.|++|+||||++-.++... ...+ ..++++.||--+|..+. +..|.+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~-~~~~~~~~v~l~ApTg~AA~~L~----e~~g~~a-- 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELA-EELGGLLPVGLAAPTGRAAKRLG----EVTGLTA-- 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCceEEEEeCchHHHHHHH----HhcCCcc--
Confidence 3567889999999999999999999999999998876554322 1223 47888999988886443 3333211
Q ss_pred EeeeeecccccCCCCceEEEEChHHHHHHHh------cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 85 EVGYSIRFEDCTSEKTVLKYMTDGMVLREML------SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 85 ~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~------~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
.|-..++.... ........++|||||++ +++...+..+++. ..++.|+|
T Consensus 393 --------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaS--Mvd~~~~~~Ll~~---~~~~~rli 447 (720)
T TIGR01448 393 --------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESS--MMDTWLALSLLAA---LPDHARLL 447 (720)
T ss_pred --------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccc--cCCHHHHHHHHHh---CCCCCEEE
Confidence 11111111000 00112457899999999 6666555555543 45678888
Q ss_pred EEccC
Q 041899 159 ISSAT 163 (650)
Q Consensus 159 ~~SAT 163 (650)
++.=+
T Consensus 448 lvGD~ 452 (720)
T TIGR01448 448 LVGDT 452 (720)
T ss_pred EECcc
Confidence 87654
No 174
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.93 E-value=0.00014 Score=76.95 Aligned_cols=127 Identities=21% Similarity=0.266 Sum_probs=76.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccC---CCCeE--EEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCC
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYT---KHGKV--GCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEK 99 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~---~~~~i--lv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~ 99 (650)
..+++++||||+||||.+..+....... .+.+| +-+=+.|+.+.++-+.+++.+|.++ .+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv--~~------------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV--KA------------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce--Ee-------------
Confidence 4689999999999998876665433211 23333 3345667777776666666565432 11
Q ss_pred ceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCC-ceEEEEccCCChHHHHhhhC
Q 041899 100 TVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSD-LKLLISSATLDAEKFSAYFN 174 (650)
Q Consensus 100 ~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~-~kii~~SAT~~~~~~~~~~~ 174 (650)
..++.-+...+. .+.++++|+||++. |+......+.-++.+.. ..++ -.++++|||...+.+.+.+.
T Consensus 239 ----~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 239 ----IESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred ----eCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 112233333222 24679999999998 66543333444444444 3333 46788999997777666553
No 175
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.92 E-value=6.5e-05 Score=84.13 Aligned_cols=138 Identities=17% Similarity=0.217 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc---cCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG---YTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~---~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
.++|++++.....++.++|+|++|+||||.+-.++.... .....+|+++.||.-+|..+.+.+..... ..+.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~---- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL---- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc----
Confidence 378999999888999999999999999988766654321 11234799999999999888877754321 1100
Q ss_pred eecccccCCCCceEEEEChHHHHHHHh-------cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREML-------SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~-------~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.............|-..|+.... +......+++|||||+- +++...+..+++. ..++.|+|++.
T Consensus 229 ----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaS--Mvd~~lm~~ll~a---l~~~~rlIlvG 299 (615)
T PRK10875 229 ----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEAS--MVDLPMMARLIDA---LPPHARVIFLG 299 (615)
T ss_pred ----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHh--cccHHHHHHHHHh---cccCCEEEEec
Confidence 00000000001122222221100 01123356899999998 6665555555553 56778888876
Q ss_pred cC
Q 041899 162 AT 163 (650)
Q Consensus 162 AT 163 (650)
=.
T Consensus 300 D~ 301 (615)
T PRK10875 300 DR 301 (615)
T ss_pred ch
Confidence 44
No 176
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.88 E-value=0.00019 Score=74.62 Aligned_cols=127 Identities=25% Similarity=0.308 Sum_probs=88.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeE--EEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKV--GCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~i--lv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
++++.++||||.||||.+........ ..++.+| +=+=-.|+-|.++-+..++.+|.++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 78999999999999977766554443 2223333 3344678888888888889888754
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCC-ceEEEEccCCChHHHHhhhC
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSD-LKLLISSATLDAEKFSAYFN 174 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~-~kii~~SAT~~~~~~~~~~~ 174 (650)
.++-++.-|...+ ..+.++++|.||=+- |+........-++.+.....+ --.+.+|||...+++.+.+.
T Consensus 264 ~vv~~~~el~~ai---~~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 EVVYSPKELAEAI---EALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred EEecCHHHHHHHH---HHhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 1233444443333 247788999999999 888877778888887775544 45677999997776666543
No 177
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.88 E-value=0.0012 Score=70.32 Aligned_cols=230 Identities=14% Similarity=0.077 Sum_probs=138.9
Q ss_pred CceEEEEChHHHHHHHhc------C-CCCCCCceEEeccccc-CCccccHHHHHHHHHHhcC------------------
Q 041899 99 KTVLKYMTDGMVLREMLS------D-PKLESYSVLMVDEAHE-RTLSTDILLGIFKDLVRLR------------------ 152 (650)
Q Consensus 99 ~~~i~~~T~~~Ll~~l~~------~-~~l~~~~~iIiDE~He-r~~~~d~ll~~l~~~~~~~------------------ 152 (650)
+++|++++|==|-..+-. + ..|+.+.++|+|.+|- -..+.+.+..+++.+-...
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 567999999554443332 1 1589999999999992 2233445555554432211
Q ss_pred ---CCceEEEEccCCChHH---HHhhhCC----CCcc-------ccCCcccceeEEEecCCCCch-------HHHHHHHH
Q 041899 153 ---SDLKLLISSATLDAEK---FSAYFNF----APIL-------RVPGRRYPVEIHYTKAPESNY-------IDAAIVTT 208 (650)
Q Consensus 153 ---~~~kii~~SAT~~~~~---~~~~~~~----~~~~-------~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~ 208 (650)
.-.|.|++|+..+++. +..+..+ ..+. .+..-..++.+.|...+..+. .+--...+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 1147999999987652 2222211 0010 011112344455543222221 11122233
Q ss_pred HHHHh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 041899 209 LEIHA-TQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAE 287 (650)
Q Consensus 209 ~~~~~-~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e 287 (650)
+.... ....+.+|||+|+--+-..+.+.|++. ++....+|--.+..+-.++-..|..|+.+||+-|-=+-
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~---------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~H 361 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE---------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFH 361 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhc---------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHh
Confidence 33333 455689999999999999999988854 77788888888888888888889999999999993221
Q ss_pred --ccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCC----CCCcEEEEeeCcccc
Q 041899 288 --TSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGR----TGPGKCFRLYTINSY 352 (650)
Q Consensus 288 --~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR----~~~G~~~~l~~~~~~ 352 (650)
.=..|.+|+.||-+|+...+ .-..++..+.+.... .+...|..||++-+.
T Consensus 362 FfrRy~irGi~~viFY~~P~~p---------------~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 362 FFRRYRIRGIRHVIFYGPPENP---------------QFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred hhhhceecCCcEEEEECCCCCh---------------hHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 23567889999986653222 223334444433322 225789999998654
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.87 E-value=3.2e-05 Score=76.49 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHcCCe-EEEEcCCCChHHHHHHHHHHhc-------ccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 11 IYHYREQVLRAVQENQV-VVIVGETGSGKTTQIPQYLHEA-------GYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~-vii~apTGsGKT~~ip~~l~~~-------~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+.+.|.+++..+..... .+|.||+|+|||+.+..++... ....+++++++.|+..++.++.+++.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57889999999988887 9999999999998777766654 134567999999999999999999866
No 179
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00023 Score=74.17 Aligned_cols=122 Identities=16% Similarity=0.281 Sum_probs=70.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
+.+.++||||+||||.+..+..... ..+.++.++ =|.|+.+.+.....++..|.++ +.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-------------------~v 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-------------------IA 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-------------------Ee
Confidence 5789999999999988776655432 233344433 3566555554444444443221 11
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChHH
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAEK 168 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~ 168 (650)
..++..+.+.+..-..-.++++|+||-+- |+....-.+.-+..+.. ..++-.++.+|||...+.
T Consensus 302 ~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 302 VRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred cCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 22455554443222222368999999998 55554444444444443 455656777999985443
No 180
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.84 E-value=6.5e-05 Score=79.45 Aligned_cols=90 Identities=21% Similarity=0.278 Sum_probs=59.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc-ccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEA-GYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKY 104 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~-~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~ 104 (650)
++++|.|.+|||||.++...+.+. ....+.+++++++...+...+.+.+..... .......+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~ 64 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDF 64 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhh
Confidence 578999999999997766555543 133456889999999999888877765430 00111122
Q ss_pred EChHHHHHHHh-cCCCCCCCceEEecccc
Q 041899 105 MTDGMVLREML-SDPKLESYSVLMVDEAH 132 (650)
Q Consensus 105 ~T~~~Ll~~l~-~~~~l~~~~~iIiDE~H 132 (650)
..+..+...+. .......+++|||||||
T Consensus 65 ~~~~~~i~~~~~~~~~~~~~DviivDEAq 93 (352)
T PF09848_consen 65 RKPTSFINNYSESDKEKNKYDVIIVDEAQ 93 (352)
T ss_pred hhhHHHHhhcccccccCCcCCEEEEehhH
Confidence 33333333222 33467789999999999
No 181
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.82 E-value=0.0027 Score=75.14 Aligned_cols=125 Identities=20% Similarity=0.224 Sum_probs=83.0
Q ss_pred CCCchHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 8 TLPIYHYREQVLRAVQ-ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
...+.+-|.+++..+. .++.++|+|+.|+||||.+-.+.. .....+.+|+.+.|+--+|..+. +..|...
T Consensus 379 ~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~-~~e~~G~~V~g~ApTgkAA~~L~----e~~Gi~a---- 449 (1102)
T PRK13826 379 HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAARE-AWEAAGYRVVGGALAGKAAEGLE----KEAGIQS---- 449 (1102)
T ss_pred CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHH-HHHHcCCeEEEEcCcHHHHHHHH----HhhCCCe----
Confidence 4678999999999874 578899999999999988766543 21234568999999987776554 3333221
Q ss_pred eeeecccccCCCCceEEEEChHHH-HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMV-LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~L-l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
.|-..+ ++.-.....+..-++|||||+. ++.+..+..+++... ..+.|+|++.=+
T Consensus 450 ------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~--~~garvVLVGD~ 505 (1102)
T PRK13826 450 ------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVT--RAGAKLVLVGDP 505 (1102)
T ss_pred ------------------eeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence 111222 2211122346667899999999 777766666666543 346788887654
No 182
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.0002 Score=75.10 Aligned_cols=124 Identities=17% Similarity=0.198 Sum_probs=75.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCC-CeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKH-GKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
++.+++++||||+||||.+..+........+ .+|.++ -+.|..+.+..+.+++.+|.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~----------------- 198 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH----------------- 198 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-----------------
Confidence 5779999999999999888777655332222 344333 23466666666677666664321
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc-CCCceEEEEccCCChHHHH
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL-RSDLKLLISSATLDAEKFS 170 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~-~~~~kii~~SAT~~~~~~~ 170 (650)
.+.+.+-+...+. .+.+.++|+||++- ++...+.+...+..+... .+.-.++++|||...+.+.
T Consensus 199 --~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 199 --AVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred --ecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 1122222222221 35677999999998 555555666666655432 3345688999999655443
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.73 E-value=0.00049 Score=62.17 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=32.0
Q ss_pred HHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 15 REQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 15 q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
..++...+.. ++.++|.||+|+|||+++-.+..... ..+..++++....
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~~ 57 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF-RPGAPFLYLNASD 57 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh-cCCCCeEEEehhh
Confidence 3445555555 78899999999999987766655432 2334566664443
No 184
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.72 E-value=0.0005 Score=68.95 Aligned_cols=139 Identities=17% Similarity=0.110 Sum_probs=85.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee-eeecccccCCCCceEE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG-YSIRFEDCTSEKTVLK 103 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg-~~~~~~~~~~~~~~i~ 103 (650)
..-.++-=.||.||--++..++++.......+.+++..+-.|-....+.+.. .|...-.... ..........-..-|+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D-IG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD-IGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH-hCCCcccceechhhccCcCCCCCCCcc
Confidence 3456777789999999988888887665555799999999999997777765 3332111111 1111111122345689
Q ss_pred EEChHHHHHHHhcCC-----------CC-CC-CceEEecccccC-Cccc-----cHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 104 YMTDGMVLREMLSDP-----------KL-ES-YSVLMVDEAHER-TLST-----DILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~-----------~l-~~-~~~iIiDE~Her-~~~~-----d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
|+|+..|...-.... |+ .+ -++||+||+|.- +... .-.-.....+...-|+.+++.+|||-
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATg 220 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATG 220 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccc
Confidence 999988866542211 11 11 269999999931 1111 11112233444566889999999996
No 185
>PRK14974 cell division protein FtsY; Provisional
Probab=97.64 E-value=0.00043 Score=71.83 Aligned_cols=121 Identities=24% Similarity=0.292 Sum_probs=70.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec--chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ--PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
..++++|++|+||||.+..+.... ...+.+++++. +.|..+.+..+..+..+|.++.. + ....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l-~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~-------~~g~----- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYL-KKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--H-------KYGA----- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--c-------cCCC-----
Confidence 578999999999998776655432 22344565543 34566655555666666654311 0 0000
Q ss_pred EECh-HHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCC
Q 041899 104 YMTD-GMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLD 165 (650)
Q Consensus 104 ~~T~-~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~ 165 (650)
.+ .++.+.+. .....++++|+||.++ |.....-++.-++.+.. ..++..+++++||..
T Consensus 206 --dp~~v~~~ai~-~~~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 --DPAAVAYDAIE-HAKARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred --CHHHHHHHHHH-HHHhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 11 11111111 1123467899999999 65544444555555544 567888999999984
No 186
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00054 Score=71.23 Aligned_cols=129 Identities=15% Similarity=0.241 Sum_probs=75.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE--ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC--TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
.++.++++||||+||||.+..+.... ...+.++.+ +=|.|..|.++-+..++.++.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv------------------- 264 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL------------------- 264 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-------------------
Confidence 56789999999999998877665543 222334433 34667766555445544443221
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChHHHHhhh
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAEKFSAYF 173 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~~~~ 173 (650)
....++.-+...+..-...+++++|+||=+- |+...+-.+.-++.+.. ..++.-++.+|||.......+.+
T Consensus 265 ~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 IVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred EecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 0112344443333222223578999999998 55544444554555443 45566678899988666655544
No 187
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.60 E-value=0.00093 Score=71.97 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=73.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEE--ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGC--TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv--~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.++++++.||||+||||.+..+..... ...+.+|.+ +-|.|..+.+.....++.++.++-
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~----------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE----------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----------------
Confidence 356899999999999988776655443 223334443 346677666666566665554320
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-c-CCCceEEEEccCCChHHHHhh
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-L-RSDLKLLISSATLDAEKFSAY 172 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~-~~~~kii~~SAT~~~~~~~~~ 172 (650)
...++.-+...+. .+.++++||||.+- +..........+..+.. . .+.-..+++|||.....+.+.
T Consensus 283 --~~~~~~~l~~~l~---~~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 283 --VVYDPKELAKALE---QLRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred --ccCCHHhHHHHHH---HhCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 0122232333332 24468999999997 44443333444444443 2 344558889999976655543
No 188
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.59 E-value=0.0003 Score=74.59 Aligned_cols=115 Identities=23% Similarity=0.370 Sum_probs=72.9
Q ss_pred chHHHHHHHHHH------HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHH--HHHHHHHhCCcc
Q 041899 11 IYHYREQVLRAV------QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISV--AARVSREMGVKL 82 (650)
Q Consensus 11 l~~~q~~~l~~l------~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~--~~~v~~~~~~~~ 82 (650)
+.+.|+++++.+ .++.++.|.||-|+|||+++-.+.... ...+..++++.||-.+|..+ ...+.+.++.++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~-~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL-RSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh-ccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 567788888887 788899999999999998886665443 23456899999999999877 344444455433
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHH
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFK 146 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~ 146 (650)
+.. ............+ ...+.+.++|||||+= .+..+.+..+-+
T Consensus 81 ~~~------------~~~~~~~~~~~~~------~~~l~~~~~lIiDEis--m~~~~~l~~i~~ 124 (364)
T PF05970_consen 81 NNN------------EKSQCKISKNSRL------RERLRKADVLIIDEIS--MVSADMLDAIDR 124 (364)
T ss_pred ccc------------ccccccccccchh------hhhhhhheeeeccccc--chhHHHHHHHHH
Confidence 211 0000000011111 1247788999999997 455444444433
No 189
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.57 E-value=0.00045 Score=79.77 Aligned_cols=136 Identities=17% Similarity=0.204 Sum_probs=74.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHH-----HhCCcc-CcEeeeeeccccc---
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSR-----EMGVKL-GHEVGYSIRFEDC--- 95 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~-----~~~~~~-g~~vg~~~~~~~~--- 95 (650)
.++.+..+||+|||+.....+++.... .-.+.++++|+.+.-..+.+.+.. .|.... |..+-+.+....+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 478999999999997665555544222 224899999999887776655431 122111 1212221111000
Q ss_pred -------------------CCCCceEEEEChHHHHHHHhc----C---------C--CCCC-CceEEecccccCCccccH
Q 041899 96 -------------------TSEKTVLKYMTDGMVLREMLS----D---------P--KLES-YSVLMVDEAHERTLSTDI 140 (650)
Q Consensus 96 -------------------~~~~~~i~~~T~~~Ll~~l~~----~---------~--~l~~-~~~iIiDE~Her~~~~d~ 140 (650)
....-.|.++|.++|-..... | | .+.. =-+||+||.|...-...
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~k- 218 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDNK- 218 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcchH-
Confidence 011468899999988553221 0 1 0111 14799999993211111
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCCh
Q 041899 141 LLGIFKDLVRLRSDLKLLISSATLDA 166 (650)
Q Consensus 141 ll~~l~~~~~~~~~~kii~~SAT~~~ 166 (650)
-...+....|.. ++..|||.+.
T Consensus 219 ---~~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 219 ---FYQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred ---HHHHHHhcCccc-EEEEeeecCC
Confidence 123333455544 5669999843
No 190
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.57 E-value=0.0064 Score=77.22 Aligned_cols=247 Identities=13% Similarity=0.159 Sum_probs=136.0
Q ss_pred CCCchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 8 TLPIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.+++.+-|.+++..+..+ +..+|+|+.|+||||.+-.++.- ....+.+|+.+.|+--++..+.+.. |......
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~-~~~~G~~V~~lAPTgrAA~~L~e~~----g~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHL-ASEQGYEIQIITAGSLSAQELRQKI----PRLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHHHHHHh----cchhhhH
Confidence 567899999999988764 89999999999999887655432 2234568999999988877665432 2211000
Q ss_pred eeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 86 VGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 86 vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
..+... .... ....|...++ ..+..+..-++|||||+- .+.+..+..+++... ..+.|+|++.=+-.
T Consensus 502 ~~~l~~---l~~~---~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~--~~garvVlvGD~~Q 568 (1960)
T TIGR02760 502 ITWVKN---LFND---DQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAE--QHNSKLILLNDSAQ 568 (1960)
T ss_pred HHHHHh---hccc---ccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHh--hcCCEEEEEcChhh
Confidence 000000 0000 0011222222 122345678999999998 677766666766542 35678888775531
Q ss_pred ------hHHHHhhhC-CCCccccCCc-ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 041899 166 ------AEKFSAYFN-FAPILRVPGR-RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEIL 237 (650)
Q Consensus 166 ------~~~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L 237 (650)
-..|..... +.+....... ...-.+........+.........+.+.. .....+|+.++..+...+...+
T Consensus 569 L~sV~aG~~f~~L~~~gv~t~~l~~i~rq~~~v~i~~~~~~~r~~~ia~~y~~L~~--~r~~tliv~~t~~dr~~Ln~~i 646 (1960)
T TIGR02760 569 RQGMSAGSAIDLLKEGGVTTYAWVDTKQQKASVEISEAVDKLRVDYIASAWLDLTP--DRQNSQVLATTHREQQDLTQII 646 (1960)
T ss_pred cCccccchHHHHHHHCCCcEEEeecccccCcceeeeccCchHHHHHHHHHHHhccc--ccCceEEEcCCcHHHHHHHHHH
Confidence 123332221 2232222110 11111122222222222333333333322 3456899999999999999999
Q ss_pred HHHHHhhcCC-CCceEEEeec-CCCCHHHHhhhcCCCCCC
Q 041899 238 KERIRKLGTK-IGELIVCPVY-ANLPTELQAKIFVPTPDG 275 (650)
Q Consensus 238 ~~~~~~~~~~-~~~~~v~~lh-~~l~~~~r~~i~~~~~~g 275 (650)
+..+...+.- ..+..+..+. ..|+..++... ..|+.|
T Consensus 647 R~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 647 RNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred HHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 9988544332 1244444443 35666666533 444444
No 191
>PRK08181 transposase; Validated
Probab=97.57 E-value=0.00079 Score=67.80 Aligned_cols=115 Identities=12% Similarity=0.142 Sum_probs=63.1
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.+.+++++++.||+|+|||.++-.+..+. ...+.+++++ +...+..++... ...
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~~g~~v~f~-~~~~L~~~l~~a----~~~-------------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGLAL-IENGWRVLFT-RTTDLVQKLQVA----RRE-------------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHHHH-HHcCCceeee-eHHHHHHHHHHH----HhC--------------------
Confidence 34578899999999999997776554433 2334456555 334444443211 000
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccc---cHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCC
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLST---DILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNF 175 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~---d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 175 (650)
.+...+++ .+.+++++||||++...... +.+..++.. .... +-+++|.-.++..+...|++
T Consensus 156 ----~~~~~~l~------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~---R~~~-~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 156 ----LQLESAIA------KLDKFDLLILDDLAYVTKDQAETSVLFELISA---RYER-RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred ----CcHHHHHH------HHhcCCEEEEeccccccCCHHHHHHHHHHHHH---HHhC-CCEEEEcCCCHHHHHHhcCC
Confidence 11112222 24578999999999433322 223333332 2222 33555555567777777653
No 192
>PRK06526 transposase; Provisional
Probab=97.54 E-value=0.00019 Score=71.83 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=26.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..++++++.||+|+|||+++-.+..+. ...+.+++++
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a-~~~g~~v~f~ 132 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRA-CQAGHRVLFA 132 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHH-HHCCCchhhh
Confidence 5677899999999999997776554443 2334456554
No 193
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.54 E-value=0.0001 Score=83.01 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=78.9
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCC---CCCcEEEEeCCCccccCcC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTP---DGARKVVLATNIAETSLTI 292 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~---~g~~kilvaT~i~e~gidi 292 (650)
.++.||.|+.-..-...+..+|.-. ++.-.-+.|....++|-..++.|. ..-...|++|-....|+|+
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~~---------~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNl 795 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQIR---------EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNL 795 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhh---------hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccch
Confidence 3678899986554444444444322 566777899999999887766664 3447899999999999999
Q ss_pred CCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcccccc
Q 041899 293 DGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQE 354 (650)
Q Consensus 293 p~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 354 (650)
...+.||. ||+ --.+-...|+.-||-|.| .-.++++.+-..+++
T Consensus 796 Qtadtvii--------fds----------dwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 796 QTADTVII--------FDS----------DWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEE 842 (1157)
T ss_pred hhcceEEE--------ecC----------CCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHH
Confidence 98888876 333 345666778777877777 456778777665543
No 194
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.47 E-value=0.0012 Score=75.99 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCC----CCC
Q 041899 199 NYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVP----TPD 274 (650)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~----~~~ 274 (650)
++.......+..+.. . +|.+|||+++....+.++..|.... +.. +..++.. .+.++++. |..
T Consensus 518 ~~~~~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~--------~~~-ll~Q~~~---~~~~ll~~f~~~~~~ 583 (697)
T PRK11747 518 AHTAEMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL--------RLM-LLVQGDQ---PRQRLLEKHKKRVDE 583 (697)
T ss_pred HHHHHHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc--------CCc-EEEeCCc---hHHHHHHHHHHHhcc
Confidence 456666666666666 3 5568999999999999999887531 122 2234543 34455543 445
Q ss_pred CCcEEEEeCCCccccCcCCC--eEEEEeCCcccceeccCC----------CCcccc--eeeecCHHhHHhhccccCCCC-
Q 041899 275 GARKVVLATNIAETSLTIDG--IKYVVDSGYSKMKWYNPK----------TGMESL--LVYPISKASAMQRAGRSGRTG- 339 (650)
Q Consensus 275 g~~kilvaT~i~e~gidip~--v~~VId~G~~k~~~~d~~----------~~~~~l--~~~~~s~~~~~Qr~GRaGR~~- 339 (650)
|...|+++|.....|||+|+ .+.||..|+.-..--||. .|-+.+ +..|.-...+.|-+||.=|..
T Consensus 584 ~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~ 663 (697)
T PRK11747 584 GEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ 663 (697)
T ss_pred CCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC
Confidence 67889999999999999986 688887776432211221 111111 112334456789999999987
Q ss_pred -CcEEEEe
Q 041899 340 -PGKCFRL 346 (650)
Q Consensus 340 -~G~~~~l 346 (650)
.|..+.+
T Consensus 664 D~G~i~il 671 (697)
T PRK11747 664 DRGRVTIL 671 (697)
T ss_pred ceEEEEEE
Confidence 4666555
No 195
>PRK04296 thymidine kinase; Provisional
Probab=97.46 E-value=0.00031 Score=67.26 Aligned_cols=37 Identities=27% Similarity=0.280 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+...++.||+|+||||.+-.++.+.. ..+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~-~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYE-ERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHH-HcCCeEEEEec
Confidence 45689999999999999888877653 33557777755
No 196
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.43 E-value=0.0014 Score=75.59 Aligned_cols=66 Identities=12% Similarity=0.045 Sum_probs=48.0
Q ss_pred CceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 99 KTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 99 ~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
...|+++|+.+|...++... .++.++.||||||| |...+-..--+++.....+++.-|.+|||.+.
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 45789999999988777665 78999999999999 54443322223344444566677999999983
No 197
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.002 Score=68.21 Aligned_cols=123 Identities=24% Similarity=0.206 Sum_probs=73.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE--ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC--TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
+..++++||||+||||++..+........+.++.+ .-+.|+.+..+..+.++.++.++- .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~-----~------------- 284 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY-----P------------- 284 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCee-----e-------------
Confidence 45688999999999999988876543333444433 456788887777777666554320 0
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc----CCCceEEEEccCCChHHHHh
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL----RSDLKLLISSATLDAEKFSA 171 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----~~~~kii~~SAT~~~~~~~~ 171 (650)
......+...+. -.++++|+||=+- |.....-.+.-+..+... .+.-.++++|||...+.+.+
T Consensus 285 -~~~~~~l~~~l~----~~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 285 -VKDIKKFKETLA----RDGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred -hHHHHHHHHHHH----hCCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 001122333332 2578999999876 544333334444444332 23357889999995544433
No 198
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.41 E-value=0.00044 Score=70.79 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=46.1
Q ss_pred CCCchHHHHHH----HHHHHcCCeEEEEcCCCChHHHH--HHHHHHhcccC---CCCeEEEecchHHHHHHHHHHHH
Q 041899 8 TLPIYHYREQV----LRAVQENQVVVIVGETGSGKTTQ--IPQYLHEAGYT---KHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 8 ~lpl~~~q~~~----l~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~---~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
+++.++.|.++ .+.+.+++.+++.+|||+|||.. +|.+....... .+.+++|..++..+..+....+.
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 44558999984 45567889999999999999933 33322111111 12389999999998777665553
No 199
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.41 E-value=0.00044 Score=70.79 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=46.1
Q ss_pred CCCchHHHHHH----HHHHHcCCeEEEEcCCCChHHHH--HHHHHHhcccC---CCCeEEEecchHHHHHHHHHHHH
Q 041899 8 TLPIYHYREQV----LRAVQENQVVVIVGETGSGKTTQ--IPQYLHEAGYT---KHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 8 ~lpl~~~q~~~----l~~l~~~~~vii~apTGsGKT~~--ip~~l~~~~~~---~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
+++.++.|.++ .+.+.+++.+++.+|||+|||.. +|.+....... .+.+++|..++..+..+....+.
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 44558999984 45567889999999999999933 33322111111 12389999999998777665553
No 200
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.40 E-value=0.01 Score=65.07 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=59.7
Q ss_pred ceEEEeecCCCCHHHHhhhcCCCC--C-CCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHH
Q 041899 250 ELIVCPVYANLPTELQAKIFVPTP--D-GARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKA 326 (650)
Q Consensus 250 ~~~v~~lh~~l~~~~r~~i~~~~~--~-g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~ 326 (650)
+.....+||.....+|+.+.+.|. + |.+-.|++=..-+.|+|+-+-+++|..++. ||| .=-.
T Consensus 770 g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlH----WNP-----------aLEq 834 (901)
T KOG4439|consen 770 GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLH----WNP-----------ALEQ 834 (901)
T ss_pred CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecc----cCH-----------HHHH
Confidence 566778899999999999988884 3 355666777888999999999999874431 222 1223
Q ss_pred hHHhhccccCCCCCcEEEEeeCccccc
Q 041899 327 SAMQRAGRSGRTGPGKCFRLYTINSYQ 353 (650)
Q Consensus 327 ~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 353 (650)
++.-|+-|.|-..+=..||+..+...+
T Consensus 835 QAcDRIYR~GQkK~V~IhR~~~~gTvE 861 (901)
T KOG4439|consen 835 QACDRIYRMGQKKDVFIHRLMCKGTVE 861 (901)
T ss_pred HHHHHHHHhcccCceEEEEEEecCcHH
Confidence 334444455444455677776665543
No 201
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0014 Score=71.09 Aligned_cols=127 Identities=20% Similarity=0.287 Sum_probs=69.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCC
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEK 99 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~ 99 (650)
..++++.++||||+||||.+..+........ +.++.++ -+.|..+.+........++..+ .
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v--------~-------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV--------H-------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee--------E--------
Confidence 4678999999999999988866654432222 2344433 3456655444433322222111 0
Q ss_pred ceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhh
Q 041899 100 TVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAY 172 (650)
Q Consensus 100 ~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~ 172 (650)
...+.+.+...+. .+.++++||||.+- ++.....+...+..+......-.+++++++.....+.+.
T Consensus 412 ---~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ei 477 (559)
T PRK12727 412 ---EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEV 477 (559)
T ss_pred ---ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHH
Confidence 0112233333332 24578999999997 443333333333333333345678889999865544443
No 202
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.37 E-value=0.00028 Score=76.20 Aligned_cols=70 Identities=20% Similarity=0.348 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+...|..++++++++...+|+||+|+|||.....+++.......+.|+|..|..+++.|+|+.+.+ .|.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~-tgLK 480 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHK-TGLK 480 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHh-cCce
Confidence 788999999999999999999999999995555555544344577999999999999999999954 4443
No 203
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.36 E-value=0.00066 Score=60.71 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=29.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAI 68 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 68 (650)
++.+++.||+|+|||+++-.++...... ...++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~-~~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP-GGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC-CCCEEEECCEEcccc
Confidence 5789999999999999887776554221 125677766655443
No 204
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.35 E-value=0.00097 Score=64.52 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=71.4
Q ss_pred HhhhcCCCchHHHHHHHHHHHc---CCeEEEEcCCCChHHHH-HHHHHHhcccCCCC-eEEEecchHHHHHHHHHHHHHH
Q 041899 3 QKERKTLPIYHYREQVLRAVQE---NQVVVIVGETGSGKTTQ-IPQYLHEAGYTKHG-KVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 3 ~~~r~~lpl~~~q~~~l~~l~~---~~~vii~apTGsGKT~~-ip~~l~~~~~~~~~-~ilv~~P~r~la~q~~~~v~~~ 77 (650)
.+...++=|++.|.++...+.+ +++.+.+.-.|.|||++ +|+..+. +.++. -+.+++| ++|..|..+.+.+.
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~--LAdg~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALA--LADGSRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHH--HcCCCcEEEEEcC-HHHHHHHHHHHHHH
Confidence 4566778899999999999865 47899999999999955 5554443 23343 4555666 56888888888777
Q ss_pred hCCccCcEeeeeecccccCC-----------------CCceEEEEChHHHHH
Q 041899 78 MGVKLGHEVGYSIRFEDCTS-----------------EKTVLKYMTDGMVLR 112 (650)
Q Consensus 78 ~~~~~g~~vg~~~~~~~~~~-----------------~~~~i~~~T~~~Ll~ 112 (650)
+|.-++..+ |...|+.... ....|+++||+.++.
T Consensus 93 lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 93 LGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred HHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 765444332 4445543322 234588999986643
No 205
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.35 E-value=0.00027 Score=70.64 Aligned_cols=121 Identities=20% Similarity=0.143 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHH--HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 8 TLPIYHYREQVLRA--VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 8 ~lpl~~~q~~~l~~--l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.+-++++--+++-. +.+|+ |+...||=|||..+.+...-..+ .+..|-|+....-||..=++.+...+. .+|..
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-~G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGls 148 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-QGKGVHVVTSNDYLAKRDAEEMRPFYE-FLGLS 148 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-TSS-EEEEESSHHHHHHHHHHHHHHHH-HTT--
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-hcCCcEEEeccHHHhhccHHHHHHHHH-Hhhhc
Confidence 34445555555554 44554 99999999999665555443333 345677777778888777766655432 34556
Q ss_pred eeeeeccccc----CCCCceEEEEChHHHHHHHhc-----CC---CCCCCceEEecccc
Q 041899 86 VGYSIRFEDC----TSEKTVLKYMTDGMVLREMLS-----DP---KLESYSVLMVDEAH 132 (650)
Q Consensus 86 vg~~~~~~~~----~~~~~~i~~~T~~~Ll~~l~~-----~~---~l~~~~~iIiDE~H 132 (650)
+|+....... ..-..+|+|+|..-+....+. .+ ..+.+.++|||||+
T Consensus 149 v~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvD 207 (266)
T PF07517_consen 149 VGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVD 207 (266)
T ss_dssp EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHH
T ss_pred cccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccc
Confidence 6654433221 112457999999866432222 11 25788999999999
No 206
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.33 E-value=0.00054 Score=77.70 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=54.9
Q ss_pred CchHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 10 PIYHYREQVLRAVQEN-QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
++.+.|.+++.....+ +.++|.||+|+|||+.+..++... ...+.+|+++.|+..++.++.+++.+
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~-~~~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQL-VKRGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEEcCcHHHHHHHHHHHHh
Confidence 5789999999887765 789999999999997776666543 33456999999999999999999965
No 207
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.31 E-value=0.0034 Score=62.29 Aligned_cols=115 Identities=15% Similarity=0.194 Sum_probs=65.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYM 105 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~ 105 (650)
+.+++.|++|+|||+++-.+..+. ...+..++++ +. .++...+...+.. .. .
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l-~~~g~~v~~i-t~----~~l~~~l~~~~~~-----------------~~-----~ 151 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL-LLRGKSVLII-TV----ADIMSAMKDTFSN-----------------SE-----T 151 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HhcCCeEEEE-EH----HHHHHHHHHHHhh-----------------cc-----c
Confidence 579999999999998776555443 2334466665 32 2333333222210 00 1
Q ss_pred ChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEccCCChHHHHhhhCC
Q 041899 106 TDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISSATLDAEKFSAYFNF 175 (650)
Q Consensus 106 T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~~~~ 175 (650)
+...+++. +.++++|||||++... .+++-..++-.++..+ .+.+-+++|.-++.+.+.+.+++
T Consensus 152 ~~~~~l~~------l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 152 SEEQLLND------LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred cHHHHHHH------hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 22233332 5578999999999433 4555555555554433 22345556666677888877764
No 208
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.28 E-value=0.00051 Score=71.29 Aligned_cols=67 Identities=16% Similarity=0.239 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHH---hcccCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLH---EAGYTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~---~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+.+.|.+++.. .++.++|.|+.|||||+.+..-+. ........+|+++.+++.++.++..|+...++
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 45778888888 677899999999999976654433 22212345899999999999999999988654
No 209
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0031 Score=71.68 Aligned_cols=123 Identities=17% Similarity=0.187 Sum_probs=77.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCC-CeEEEe-c-chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKH-GKVGCT-Q-PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~ilv~-~-P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
++++.++||||+||||.+..+........+ .+|.++ . +.|+.+.+.-+.+++.+|.++-
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~------------------ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH------------------ 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc------------------
Confidence 568899999999999888776644322333 354443 2 4566666656566665554320
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChHHHH
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAEKFS 170 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~ 170 (650)
...++..+...+. .++++++|+||=+- |+....-+...+..+.. ..+.-.++++|||...+.+.
T Consensus 247 -~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 247 -AVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred -ccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 1124555444332 35678999999998 66655555666665543 44666788999998665554
No 210
>PF13173 AAA_14: AAA domain
Probab=97.24 E-value=0.0019 Score=57.48 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+++.++|.||.|+||||++-+++.... ...+++++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc--ccccceee
Confidence 467899999999999999988876643 23345554
No 211
>PRK08727 hypothetical protein; Validated
Probab=97.21 E-value=0.0023 Score=63.42 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=23.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+.+++.||+|+|||+++-.+..+. ..++.+++|+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~-~~~~~~~~y~ 75 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA-EQAGRSSAYL 75 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEE
Confidence 469999999999998776554443 2334466665
No 212
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.0048 Score=65.86 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=74.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCC---CCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTK---HGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~---~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.++.+.++||||+||||.+..+........ ...++..-..|..+.+....+++.+|.++- +
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~--~-------------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR--S-------------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee--c--------------
Confidence 567899999999999988876554321111 123344445577777766677666654321 0
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEccCCChHHHHhh
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISSATLDAEKFSAY 172 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~ 172 (650)
+-++.-+...+. .+.+.++++||.+- |......+...++.+.... +.-.++++|||...+.+.+.
T Consensus 254 ---v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 254 ---IKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred ---CCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 011111222121 26678999999974 5555455556666654433 33457789999866655543
No 213
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.0074 Score=60.75 Aligned_cols=124 Identities=17% Similarity=0.286 Sum_probs=65.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE--ecchHHH-HHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC--TQPRRVA-AISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~l-a~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
+.+.+.||+|+||||.+-...... ...+.++.+ +-+.|.. +.|+. ..++.++.++ .
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l-~~~~~~v~~i~~D~~ri~~~~ql~-~~~~~~~~~~-------------------~ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQF-HGKKKTVGFITTDHSRIGTVQQLQ-DYVKTIGFEV-------------------I 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHHHHH-HHhhhcCceE-------------------E
Confidence 789999999999998776655443 122333433 3344543 33433 3323222111 0
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHH-hcCCCceEEEEccCCChHHHHh
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLV-RLRSDLKLLISSATLDAEKFSA 171 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~-~~~~~~kii~~SAT~~~~~~~~ 171 (650)
...++.-+.+.+..-....++++||||.+= |....+-.+.-++.+. ...++..++++|||...+...+
T Consensus 135 ~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 135 AVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 011233333322111123468999999998 5544333333333333 3456667888999985544433
No 214
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.0031 Score=73.09 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred eEEEEccCC-ChHHHHhhhCCCCccc-cCCcccc---ee--------------EEEecCCCCchHHHHHHHHHHHHhcCC
Q 041899 156 KLLISSATL-DAEKFSAYFNFAPILR-VPGRRYP---VE--------------IHYTKAPESNYIDAAIVTTLEIHATQA 216 (650)
Q Consensus 156 kii~~SAT~-~~~~~~~~~~~~~~~~-~~~~~~~---v~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (650)
.+|++|||+ +.+.|.+.+|...... ..+..+| +. ..|......++.......+.++....
T Consensus 443 svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~~~- 521 (705)
T TIGR00604 443 SVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKII- 521 (705)
T ss_pred EEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhhcC-
Confidence 478999999 6677888777422111 1111111 11 11222222345555555565665544
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHH--HhhcCCCCceEEEeecCCCCHHHHhhhcCCCC----CCCcEEEEeC--CCccc
Q 041899 217 SGDILVFLTGQEEIETVEEILKERI--RKLGTKIGELIVCPVYANLPTELQAKIFVPTP----DGARKVVLAT--NIAET 288 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~--~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~----~g~~kilvaT--~i~e~ 288 (650)
+|.+|||+|+....+.+++.+.+.. ..+... ..+.+-+ .+. .++..+++.|+ .|.-.|++|+ .....
T Consensus 522 pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~-k~i~~E~-~~~---~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 522 PDGIVVFFPSYSYLENIVSTWKEMGILENIEKK-KLIFVET-KDA---QETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcC-CCEEEeC-CCc---chHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 6889999999999999998876531 111100 1222222 111 35566777774 2455699999 88999
Q ss_pred cCcCCC--eEEEEeCCcccceeccCCC--------------CcccceeeecCHHhHHhhccccCCCCC--cEEEEe
Q 041899 289 SLTIDG--IKYVVDSGYSKMKWYNPKT--------------GMESLLVYPISKASAMQRAGRSGRTGP--GKCFRL 346 (650)
Q Consensus 289 gidip~--v~~VId~G~~k~~~~d~~~--------------~~~~l~~~~~s~~~~~Qr~GRaGR~~~--G~~~~l 346 (650)
|||+++ .+.||-.|+.-....|+.. |...++. ........|-+||+=|... |..+.+
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYE-FDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHH-HHHHHHHHHHhCccccCcCceEEEEEE
Confidence 999987 5788888886533333211 1101111 1233567899999999985 544443
No 215
>PF05729 NACHT: NACHT domain
Probab=97.10 E-value=0.0034 Score=58.25 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=33.6
Q ss_pred eEEecccccCCcccc-----HHHHHHHHHHhc--CCCceEEEEccCCChHHHHhhhCCC
Q 041899 125 VLMVDEAHERTLSTD-----ILLGIFKDLVRL--RSDLKLLISSATLDAEKFSAYFNFA 176 (650)
Q Consensus 125 ~iIiDE~Her~~~~d-----~ll~~l~~~~~~--~~~~kii~~SAT~~~~~~~~~~~~~ 176 (650)
++|||-++|-..... .....+..+... .++.++++.|.+-....+.+.+...
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~ 142 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA 142 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC
Confidence 488888886544322 244455555543 6789988888776666677776544
No 216
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=97.06 E-value=0.015 Score=64.68 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=86.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhC---C-----ccCcEee-----eee
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMG---V-----KLGHEVG-----YSI 90 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~---~-----~~g~~vg-----~~~ 90 (650)
+.+-.++.+|=|.|||+.+-.++.......+.+|+|+.|+..-+.++.+++...+. . ..+..+. ..+
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E~I 265 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDENL 265 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCeeEE
Confidence 55678899999999997776554433222356999999999999999988776553 1 1111111 011
Q ss_pred cccccCCC---CceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChH
Q 041899 91 RFEDCTSE---KTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAE 167 (650)
Q Consensus 91 ~~~~~~~~---~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~ 167 (650)
.+...... .+.+.|++... +.-.-.+++++|+|||+ .+..+.+..++--+.. .+.++|++|.+-+.+
T Consensus 266 ~f~~p~gak~G~sti~F~Ars~------~s~RG~~~DLLIVDEAA--fI~~~~l~aIlP~l~~--~~~k~IiISS~~~~~ 335 (752)
T PHA03333 266 EYISDPAAKEGKTTAHFLASSP------NAARGQNPDLVIVDEAA--FVNPGALLSVLPLMAV--KGTKQIHISSPVDAD 335 (752)
T ss_pred EEecCcccccCcceeEEecccC------CCcCCCCCCEEEEECcc--cCCHHHHHHHHHHHcc--CCCceEEEeCCCCcc
Confidence 11111111 14555543320 11111357999999999 4444555554443322 467899999998888
Q ss_pred HHHhhhCC
Q 041899 168 KFSAYFNF 175 (650)
Q Consensus 168 ~~~~~~~~ 175 (650)
.+..++++
T Consensus 336 s~tS~L~n 343 (752)
T PHA03333 336 SWISRVGE 343 (752)
T ss_pred hHHHHhhh
Confidence 88887764
No 217
>PRK06893 DNA replication initiation factor; Validated
Probab=97.05 E-value=0.0038 Score=61.70 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=23.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..+++.||+|+|||+++-.+..+. ..++.++.|+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~y~ 73 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY-LLNQRTAIYI 73 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEe
Confidence 4557999999999998876665443 2223455554
No 218
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.04 E-value=0.0049 Score=62.11 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=69.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCC------CeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCC
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKH------GKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEK 99 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~------~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~ 99 (650)
.+++|+|+||-|||+++-.+...+....+ ..+.+-.|...-...++..+...+|.+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------------- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------------- 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------------
Confidence 57999999999999999888765532211 1445556887778888888888888654211
Q ss_pred ceEEEEChHHHHHHHhcCCCCCCCceEEeccccc--C--CccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 100 TVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHE--R--TLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 100 ~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~He--r--~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
..+.-.+. ..++.+ . --++.++||||+|. . .......+..+|.+.+. -++.+|+. .|.
T Consensus 128 ~~~~~~~~-~~~~ll-r---~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne-L~ipiV~v-Gt~ 189 (302)
T PF05621_consen 128 DRVAKLEQ-QVLRLL-R---RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE-LQIPIVGV-GTR 189 (302)
T ss_pred CCHHHHHH-HHHHHH-H---HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc-cCCCeEEe-ccH
Confidence 00000011 111111 1 12578999999993 1 12223455666665332 24556654 453
No 219
>PRK09183 transposase/IS protein; Provisional
Probab=97.03 E-value=0.0091 Score=60.09 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=27.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..+.++++.||+|+|||+++..+.... ...+.++.++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a-~~~G~~v~~~ 136 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEA-VRAGIKVRFT 136 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 5678899999999999998887664443 2234466665
No 220
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.00 E-value=0.011 Score=61.18 Aligned_cols=126 Identities=25% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec--chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ--PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
++.+.++||+|+||||.+........ ..+++|+++. +.|+.+.+.....+...+..+ ... . .....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~-~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~------~~~--~-~~~dp-- 181 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYK-AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPV------IAQ--K-EGADP-- 181 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-hcCCeEEEEecCccchhhHHHHHHHHHHcCceE------EEe--C-CCCCH--
Confidence 46788999999999987766554432 2345665542 456666555545555544321 100 0 00000
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-------cCCCceEEEEccCCChHH
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-------LRSDLKLLISSATLDAEK 168 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-------~~~~~kii~~SAT~~~~~ 168 (650)
.......+. .....++++||||=+- |....+.++.-++.+.. ..++-.++.++||...+.
T Consensus 182 ----a~~v~~~l~-~~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 182 ----ASVAFDAIQ-AAKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred ----HHHHHHHHH-HHHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 011111111 1124678999999998 66655555555555443 235667899999984443
No 221
>PRK05642 DNA replication initiation factor; Validated
Probab=96.99 E-value=0.0049 Score=61.11 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=23.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+.+++.||+|+|||.++-.+..+. ..++.+++|+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~-~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF-EQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEee
Confidence 568999999999998865544332 22345666653
No 222
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.95 E-value=0.00047 Score=64.34 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=55.3
Q ss_pred EEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeeccc-------ccCCCCce
Q 041899 29 VIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFE-------DCTSEKTV 101 (650)
Q Consensus 29 ii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~-------~~~~~~~~ 101 (650)
||.|+-|-|||+.+-+++.........+|+++.|+...+..+.+.+...+. ..||..... ........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLK-----ALGYKEEKKKRIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC-------------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcc-----ccccccccccccccccccccccce
Confidence 689999999998887776554333234899999999999888866644332 112211000 01123567
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
|.|..|+.+... -...+++|||||= .+.... ++.+.. ..+.++||.|+
T Consensus 76 i~f~~Pd~l~~~------~~~~DlliVDEAA--aIp~p~----L~~ll~---~~~~vv~stTi 123 (177)
T PF05127_consen 76 IEFVAPDELLAE------KPQADLLIVDEAA--AIPLPL----LKQLLR---RFPRVVFSTTI 123 (177)
T ss_dssp --B--HHHHCCT----------SCEEECTGG--GS-HHH----HHHHHC---CSSEEEEEEEB
T ss_pred EEEECCHHHHhC------cCCCCEEEEechh--cCCHHH----HHHHHh---hCCEEEEEeec
Confidence 788888766431 2245899999997 444433 344332 23467778887
No 223
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.94 E-value=0.0063 Score=59.92 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=24.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.+..+++.||+|+|||+++-.+.... ...+..++++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~-~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA-EERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HhcCCcEEEE
Confidence 45689999999999998886665443 2223345543
No 224
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.93 E-value=0.0032 Score=63.92 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
...+++.||+|+||||++-.+..... .....+..+.+...-..+....+...+|.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~-~~~~~~~~~~~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD-QERVVAAKLVNTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC-CCCeEEeeeeCCCCCHHHHHHHHHHHcCC
Confidence 34799999999999999877765432 11112223333222334445555555543
No 225
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.90 E-value=0.012 Score=59.64 Aligned_cols=126 Identities=23% Similarity=0.345 Sum_probs=69.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec--chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ--PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
+.++++||+|+||||.+....... ...+.+++++- +.|..+.+....+++..+.++ + ... . ..+.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~---~--~~~--~-~~dp---- 139 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV---I--KQK--E-GADP---- 139 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE---E--eCC--C-CCCH----
Confidence 578889999999998776655433 22344665543 567766665556666555221 0 000 0 0000
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-c------CCCceEEEEccCCChHHH
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-L------RSDLKLLISSATLDAEKF 169 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~------~~~~kii~~SAT~~~~~~ 169 (650)
.....+.+. ....+++++||||=+- |......++.-++.+.. . .++-.+++++||...+.+
T Consensus 140 ---~~~~~~~l~-~~~~~~~D~ViIDT~G-~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~ 207 (272)
T TIGR00064 140 ---AAVAFDAIQ-KAKARNIDVVLIDTAG-RLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNAL 207 (272)
T ss_pred ---HHHHHHHHH-HHHHCCCCEEEEeCCC-CCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHH
Confidence 011112111 1123679999999998 55444444444444433 2 267788999999854433
No 226
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.88 E-value=0.0059 Score=60.60 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
...+++.||+|+|||+++-.+..+.. .++.++.++
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~-~~~~~v~y~ 79 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS-QRGRAVGYV 79 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 36899999999999988766554432 234456665
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.014 Score=60.62 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=61.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.++++++.||||+|||+++-.+..+. ..++..|+++ +...+...+.... +. ...
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l-~~~g~~V~y~-t~~~l~~~l~~~~---~~--------------~~~------- 235 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL-LDRGKSVIYR-TADELIEILREIR---FN--------------NDK------- 235 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEE-EHHHHHHHHHHHH---hc--------------cch-------
Confidence 46889999999999998765544433 3344566665 4444444433210 00 000
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEccCCChHHHHhhhC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISSATLDAEKFSAYFN 174 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~~~ 174 (650)
..... ++ .+.+++++|||+++. ...+++....+-.+...+ ..-+-+++|...+++.+.+.++
T Consensus 236 -~~~~~-~~------~l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 236 -ELEEV-YD------LLINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred -hHHHH-HH------HhccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 00000 11 255789999999983 223333333333333322 1123356666667777666554
No 228
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.82 E-value=0.0081 Score=59.30 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=25.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
.++.+++.||+|+|||+++-.+..+. ...+..++++.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~-~~~~~~~~~i~ 77 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADA-SYGGRNARYLD 77 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEe
Confidence 34679999999999998876555443 23344555543
No 229
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.014 Score=63.41 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=71.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCC-eEE--EecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHG-KVG--CTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~-~il--v~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.++++.++||||+||||.+-.+........++ +|. -.-+.|+.+.+..+.+++.+|.++.. .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~--~------------- 319 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHA--V------------- 319 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeec--c-------------
Confidence 45789999999999998887766543233332 343 23456777777777777766643210 0
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEccCCChHHHHh
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISSATLDAEKFSA 171 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~ 171 (650)
.+..-+...+ ..+.++++++||.+= |+.....+...+..+.... +.-.++.++||.....+.+
T Consensus 320 ----~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~ 383 (484)
T PRK06995 320 ----KDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNE 383 (484)
T ss_pred ----CCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHH
Confidence 0001111111 246678999999976 5544333333333322221 3336888999986665544
No 230
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.81 E-value=0.015 Score=58.33 Aligned_cols=116 Identities=20% Similarity=0.240 Sum_probs=67.7
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.+.++.++++.||+|+|||+++..+..+.. ..+.++++ ++.-.++.++...... |
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f-~~~~el~~~Lk~~~~~--~--------------------- 155 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLF-ITAPDLLSKLKAAFDE--G--------------------- 155 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEE-EEHHHHHHHHHHHHhc--C---------------------
Confidence 445788999999999999988766665553 33334444 4666676666543321 0
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCcc---ccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCC
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLS---TDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNF 175 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 175 (650)
...+.|.+ .+.+++++||||+=-.... .+.+..++......+ .. ++|.-.+.+.+.+.|+.
T Consensus 156 ----~~~~~l~~------~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~---~~-~~tsN~~~~~~~~~~~~ 219 (254)
T COG1484 156 ----RLEEKLLR------ELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESR---SL-IITSNLSFGEWDELFGD 219 (254)
T ss_pred ----chHHHHHH------HhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhc---cc-eeecCCChHHHHhhccC
Confidence 11223333 2568899999999832222 244444444333322 22 55555566666666653
No 231
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.0056 Score=68.97 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+......+.-.+++++||||+| .+..+..-.++|.+-.-.++.++|+.+
T Consensus 108 Ie~a~~~P~~gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 108 LERAVYAPVDARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHhccccCCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 3444444555678999999999 444444555666544444455555544
No 232
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.017 Score=60.67 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=30.5
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+.+...+....+.++||||+| .++......+++.+-.-.++..+|++|
T Consensus 130 ~~~l~~~~~~g~~rVviIDeAd--~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 130 GHFLSQTSGDGNWRIVIIDPAD--DMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred HHHhhhccccCCceEEEEEchh--hcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 3344444556788999999999 444445555666654444455556665
No 233
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.019 Score=60.97 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=74.1
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCc--cccCcCCC
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIA--ETSLTIDG 294 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~--e~gidip~ 294 (650)
...+||+.|+.-+-.++...+++. .+....+|--.+...-.++-+.|-.|..+|++-|.=+ -+--+|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e---------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikG 622 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKE---------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKG 622 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhh---------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecc
Confidence 467899999999999999888875 3333333322222222233344667889999998543 24568899
Q ss_pred eEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC-----cEEEEeeCccc
Q 041899 295 IKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP-----GKCFRLYTINS 351 (650)
Q Consensus 295 v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~-----G~~~~l~~~~~ 351 (650)
|+-||.++. -..|.-.++++.+.+|+--.|. -.|-.||++-+
T Consensus 623 Vk~vVfYqp---------------P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 623 VKNVVFYQP---------------PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred eeeEEEecC---------------CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 999997443 2235567888889888854442 35888888754
No 234
>PRK08116 hypothetical protein; Validated
Probab=96.64 E-value=0.019 Score=58.16 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=57.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYM 105 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~ 105 (650)
..+++.|++|+|||+++-.+..+. ..++..++++ +...+.. .+...++.. . . .
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l-~~~~~~v~~~-~~~~ll~----~i~~~~~~~------------~---~------~ 167 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL-IEKGVPVIFV-NFPQLLN----RIKSTYKSS------------G---K------E 167 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEE-EHHHHHH----HHHHHHhcc------------c---c------c
Confidence 349999999999998776554443 3334455555 3333333 332222110 0 0 0
Q ss_pred ChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc--CCCceEEEEccCCChHHHHhhhC
Q 041899 106 TDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL--RSDLKLLISSATLDAEKFSAYFN 174 (650)
Q Consensus 106 T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~--~~~~kii~~SAT~~~~~~~~~~~ 174 (650)
+..-+++ .+.+.+++||||++.- ..+++....+-.++.. ....++|+ |...+++.+.+.++
T Consensus 168 ~~~~~~~------~l~~~dlLviDDlg~e-~~t~~~~~~l~~iin~r~~~~~~~Ii-TsN~~~~eL~~~~~ 230 (268)
T PRK08116 168 DENEIIR------SLVNADLLILDDLGAE-RDTEWAREKVYNIIDSRYRKGLPTIV-TTNLSLEELKNQYG 230 (268)
T ss_pred cHHHHHH------HhcCCCEEEEecccCC-CCCHHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHh
Confidence 1111222 2456789999999821 1233433333333331 23344444 44556666665443
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.63 E-value=0.014 Score=64.03 Aligned_cols=43 Identities=19% Similarity=0.080 Sum_probs=26.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAIS 69 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q 69 (650)
+.+++.||+|+|||+++-.+..+.... .+.+++++ +...+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHH
Confidence 458999999999998775554443211 13466666 43344443
No 236
>PRK12377 putative replication protein; Provisional
Probab=96.62 E-value=0.029 Score=55.83 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=28.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVA 71 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~ 71 (650)
...+++.||+|+|||+++-.+..+. ..++..++++ +...+..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l-~~~g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL-LAKGRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH-HHcCCCeEEE-EHHHHHHHHH
Confidence 4689999999999998776555443 2333445443 4444554443
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.0085 Score=64.74 Aligned_cols=46 Identities=24% Similarity=0.366 Sum_probs=28.0
Q ss_pred cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 116 SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 116 ~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
..+.-..+.++||||+| .+..+..-++++.+-. +...+++.-||-+
T Consensus 115 ~~p~~g~~KV~IIDEah--~Ls~~A~NALLKtLEE--Pp~~viFILaTte 160 (484)
T PRK14956 115 FAPMGGKYKVYIIDEVH--MLTDQSFNALLKTLEE--PPAHIVFILATTE 160 (484)
T ss_pred hhhhcCCCEEEEEechh--hcCHHHHHHHHHHhhc--CCCceEEEeecCC
Confidence 33445678999999999 4555566666666533 3334454445533
No 238
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.59 E-value=0.0027 Score=60.00 Aligned_cols=117 Identities=14% Similarity=0.189 Sum_probs=55.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
+.+++++++.||||+|||+++..+..+. ..++..++++ +...|...+. .... ..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~~v~f~-~~~~L~~~l~----~~~~-----------------~~--- 97 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEA-IRKGYSVLFI-TASDLLDELK----QSRS-----------------DG--- 97 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEE-EHHHHHHHHH----CCHC-----------------CT---
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHh-ccCCcceeEe-ecCceecccc----cccc-----------------cc---
Confidence 4578899999999999998776665544 3344456665 4444544432 1000 00
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChHHHHhhhCCC
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAEKFSAYFNFA 176 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~~~~~~~ 176 (650)
+...+++. +.+++++||||+--... ++.....+-.++. +..+..+|+ |.-++.+.+.+.+++.
T Consensus 98 ----~~~~~~~~------l~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~~~tIi-TSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 98 ----SYEELLKR------LKRVDLLILDDLGYEPL-SEWEAELLFEIIDERYERKPTII-TSNLSPSELEEVLGDR 161 (178)
T ss_dssp ----THCHHHHH------HHTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT-EEEE-EESS-HHHHHT-----
T ss_pred ----chhhhcCc------cccccEecccccceeee-cccccccchhhhhHhhcccCeEe-eCCCchhhHhhccccc
Confidence 01122332 45679999999982222 2222222222222 212234454 5556888888888743
No 239
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.58 E-value=0.013 Score=59.15 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.2
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
.++++.||+|+|||+++-.+.
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 468999999999998775553
No 240
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.56 E-value=0.013 Score=59.79 Aligned_cols=61 Identities=20% Similarity=0.158 Sum_probs=44.2
Q ss_pred hhcCCCchHHHHHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHH
Q 041899 5 ERKTLPIYHYREQVLRAVQENQ--VVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRV 65 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~--~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~ 65 (650)
....-|...+|.-+++.+...+ -|.+.|..|||||.++..+-++..+.. -.+++++-|+..
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vp 287 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVP 287 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcC
Confidence 3455688899999999998664 578899999999966655555543333 238888877643
No 241
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.029 Score=56.71 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=25.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEec
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQ 61 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~ 61 (650)
.++.+++.||||+|||+++-.+..+. ..+ +..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-MRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-hhhcCceEEEEE
Confidence 46789999999999998876555443 333 44666654
No 242
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.49 E-value=0.012 Score=61.13 Aligned_cols=135 Identities=15% Similarity=0.254 Sum_probs=67.5
Q ss_pred CchHHHHHHHHHHHcCC----eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHH-HH--HHHHHHHHHhCCcc
Q 041899 10 PIYHYREQVLRAVQENQ----VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVA-AI--SVAARVSREMGVKL 82 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~----~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l-a~--q~~~~v~~~~~~~~ 82 (650)
++||||+..++.+...+ -.+++||.|.|||+.+-.+.... . |-.|...- +. .-++.+.. |...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l-l-------C~~~~~~~~Cg~C~sC~~~~~--g~HP 72 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL-L-------CEAPQGGGACGSCKGCQLLRA--GSHP 72 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH-c-------CCCCCCCCCCCCCHHHHHHhc--CCCC
Confidence 57999999998876443 58899999999997765554332 1 11111000 00 00111110 1100
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
.. +.+.-+ ..+..|.+-.---+...+...|...+..++||||+| .++.+..-+++|.+-.-.++..+|+.|.
T Consensus 73 D~---~~i~~~---~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 73 DN---FVLEPE---EADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred CE---EEEecc---CCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 00 000000 001112221112334455556677889999999999 4455555666665544333444444443
No 243
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.49 E-value=0.019 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 041899 28 VVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~ 49 (650)
+++.||+|+|||+++-.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999998886665543
No 244
>PHA02533 17 large terminase protein; Provisional
Probab=96.49 E-value=0.019 Score=63.70 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=90.6
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHH-hcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC-c
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLH-EAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG-H 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~-~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g-~ 84 (650)
..+++.++|.+++..+..++-.++.-+=..|||+.+..+.+ ......+..++++.|++.-|..+.+++......... .
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 35889999999999987777788999999999988775443 333345569999999999999998888653321100 0
Q ss_pred Eeeeee--cccccCCCCceEEEEChHHHHHHHhcCCCC--CCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 85 EVGYSI--RFEDCTSEKTVLKYMTDGMVLREMLSDPKL--ESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 85 ~vg~~~--~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l--~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
..+... ...-.....+.|.+.|.. .... .+.+++|+||+|...-..++..+ +...+......++++.
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~--------~~t~rG~~~~~liiDE~a~~~~~~e~~~a-i~p~lasg~~~r~iii 206 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASS--------PDAVRGNSFAMIYIDECAFIPNFIDFWLA-IQPVISSGRSSKIIIT 206 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCC--------CCccCCCCCceEEEeccccCCCHHHHHHH-HHHHHHcCCCceEEEE
Confidence 001000 000001234555554432 0112 23567999999943222233333 2222333334566666
Q ss_pred ccCCChHHHHhhh
Q 041899 161 SATLDAEKFSAYF 173 (650)
Q Consensus 161 SAT~~~~~~~~~~ 173 (650)
|.+-....+.+.+
T Consensus 207 STp~G~n~fye~~ 219 (534)
T PHA02533 207 STPNGLNHFYDIW 219 (534)
T ss_pred ECCCchhhHHHHH
Confidence 6665333354433
No 245
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.48 E-value=0.03 Score=58.76 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=23.7
Q ss_pred HHHHHHHcCC--eEEEEcCCCChHHHHHHHHHHhc
Q 041899 17 QVLRAVQENQ--VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 17 ~~l~~l~~~~--~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+...+..++ .+++.||+|+|||+.+-.+..+.
T Consensus 26 ~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 26 RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3334455555 79999999999998886665443
No 246
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.45 E-value=0.0012 Score=61.68 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=72.3
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCC--CccccCcCC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATN--IAETSLTID 293 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~--i~e~gidip 293 (650)
.+|.+|||+|+....+.+.+.+...... .+..+. .. ...+...+++.|+.+.-.|++++. ....|||+|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----~~~~v~--~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-----KGIPVF--VQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------ETSCEE--ES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-----ccceee--ec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 3689999999999999998887653210 012121 11 244667777888888999999998 999999999
Q ss_pred C--eEEEEeCCcccceeccCCC-------------CcccceeeecCHHhHHhhccccCCCCCcEEEE
Q 041899 294 G--IKYVVDSGYSKMKWYNPKT-------------GMESLLVYPISKASAMQRAGRSGRTGPGKCFR 345 (650)
Q Consensus 294 ~--v~~VId~G~~k~~~~d~~~-------------~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~ 345 (650)
+ ++.||-.|+.-...-|+.. +... ...+.......|-+||+=|.....+..
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~l~Qa~GR~iR~~~D~g~i 144 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRD-WYLPPAIRKLKQAIGRLIRSEDDYGVI 144 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHH-HTHHHHHHHHHHHHHCC--STT-EEEE
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhh-HhhHHHHHHHhhhcCcceeccCCcEEE
Confidence 6 7788888876433333311 1111 222334456789999999988644333
No 247
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.43 E-value=0.027 Score=58.08 Aligned_cols=112 Identities=12% Similarity=0.161 Sum_probs=59.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE-ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC-TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv-~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
.++.+++.||+|+|||+++-.+..+.. ..+..+.+ ..| .++.++...+ +. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~v~~~~~~--~l~~~lk~~~----~~------------------~--- 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-KKGVSSTLLHFP--EFIRELKNSI----SD------------------G--- 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEEHH--HHHHHHHHHH----hc------------------C---
Confidence 356899999999999988776655543 33334443 334 3444433222 10 0
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHH-HHHHHHHhcC-CCceEEEEccCCChHHHHhhh
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILL-GIFKDLVRLR-SDLKLLISSATLDAEKFSAYF 173 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll-~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~~ 173 (650)
+....++ .+.+++++||||+.-... +++.. .++..++..| ..-+-.++|.-++.+.+.+.|
T Consensus 207 ---~~~~~l~------~l~~~dlLiIDDiG~e~~-s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ---SVKEKID------AVKEAPVLMLDDIGAEQM-SSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ---cHHHHHH------HhcCCCEEEEecCCCccc-cHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 1111222 256789999999983222 22222 2333333222 122345555556777777776
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.41 E-value=0.016 Score=53.38 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
.++|.||+|+|||+++-.++..... .++.++++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCc
Confidence 3689999999999988777666533 456777765543
No 249
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.37 E-value=0.013 Score=59.81 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=49.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCC-CeEEE--ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKH-GKVGC--TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~-~~ilv--~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.+++++++||||+||||.+..+........+ .+|.+ +=|.|+.+.+....++..++.++.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~----------------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK----------------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee-----------------
Confidence 3458999999999999888766654433212 33333 445566665555556555543320
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEeccc
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEA 131 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~ 131 (650)
...++.-+...+. .+.++++|+||.+
T Consensus 256 --~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 256 --VARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred --ccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 0112333333332 2456899999975
No 250
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.31 E-value=0.033 Score=59.67 Aligned_cols=120 Identities=19% Similarity=0.245 Sum_probs=65.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.++.++|++|+||||.+........ ..+.+++++ =|.|..|.++.+..++..+.++ +..... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~-----~~~~~~----~----- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQ-RKGFKPCLVCADTFRAGAFDQLKQNATKARIPF-----YGSYTE----S----- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HCCCCEEEEcCcccchhHHHHHHHHhhccCCeE-----EeecCC----C-----
Confidence 4688999999999987766544321 223354443 3567666665555554433221 000000 0
Q ss_pred EECh-HHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 104 YMTD-GMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~-~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
.+ .+..+.+.. -.-.++++||||=+- |....+-++.-+..+.. ..|+-.+++++||.
T Consensus 166 --dp~~i~~~~l~~-~~~~~~DvViIDTaG-r~~~d~~lm~El~~i~~~~~p~e~lLVlda~~ 224 (429)
T TIGR01425 166 --DPVKIASEGVEK-FKKENFDIIIVDTSG-RHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI 224 (429)
T ss_pred --CHHHHHHHHHHH-HHhCCCCEEEEECCC-CCcchHHHHHHHHHHhhhcCCcEEEEEecccc
Confidence 11 111111110 011468999999998 55544445555555443 45677788899987
No 251
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.29 E-value=0.027 Score=60.83 Aligned_cols=35 Identities=26% Similarity=0.289 Sum_probs=23.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEec
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQ 61 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~ 61 (650)
+.+++.||+|+|||+++-.+..+. ... +.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEE
Confidence 458999999999998774443332 222 34677764
No 252
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.26 E-value=0.012 Score=67.80 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=47.6
Q ss_pred CCCchHHHHHHHHHH----Hc-----CCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHH
Q 041899 8 TLPIYHYREQVLRAV----QE-----NQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVA 71 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l----~~-----~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~ 71 (650)
.+-.++-|.+....+ .+ ++.++|.||||+||| +++|.++... ..+++|+|...|+.|-.|+.
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~--~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIAR--AEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHH--HcCCeEEEEcCCHHHHHHHH
Confidence 345777788766654 33 478999999999999 7888765543 34668999999999998885
No 253
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.26 E-value=0.042 Score=59.27 Aligned_cols=118 Identities=26% Similarity=0.371 Sum_probs=64.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.+++++|++|+||||.+..+..... ..+.+++++ =+.|..+.+....++...+.++ .+ .. ..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~-~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~-----~~---~~---- 159 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFK-KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG-----DP---DN---- 159 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee-----cC---Cc----
Confidence 4688999999999987766554332 223344443 3456666665556666555331 00 00 00
Q ss_pred EECh-HHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 104 YMTD-GMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~-~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
..+ ..+.+.+.. +...++||||.+- |....+-++.-++.+.. ..++..++.++||.
T Consensus 160 -~d~~~i~~~al~~---~~~~DvVIIDTAG-r~~~d~~lm~El~~l~~~~~pdevlLVvda~~ 217 (437)
T PRK00771 160 -KDAVEIAKEGLEK---FKKADVIIVDTAG-RHALEEDLIEEMKEIKEAVKPDEVLLVIDATI 217 (437)
T ss_pred -cCHHHHHHHHHHH---hhcCCEEEEECCC-cccchHHHHHHHHHHHHHhcccceeEEEeccc
Confidence 011 112222211 2335899999997 44444444444444433 45677788888885
No 254
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.23 E-value=0.015 Score=62.32 Aligned_cols=42 Identities=29% Similarity=0.396 Sum_probs=31.3
Q ss_pred CCCchHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 8 TLPIYHYREQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.|...+.+.+.+..+. .+.-++++|||||||||.+..++.+.
T Consensus 239 ~Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 239 KLGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred HhCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 3556677776666654 34678999999999998887777664
No 255
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.032 Score=62.22 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=31.2
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
+..+...+...++.++||||+| .++....-.++|.+-.-.+++++|+.|-
T Consensus 113 ie~~~~~P~~gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 113 LDKAVYAPTAGRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHhchhcCCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 3333344556789999999999 4444555566665544445566666543
No 256
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.21 E-value=0.0097 Score=61.45 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=37.3
Q ss_pred hHHHHHHHH-HHHcCCeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHH
Q 041899 12 YHYREQVLR-AVQENQVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVA 66 (650)
Q Consensus 12 ~~~q~~~l~-~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~l 66 (650)
.+.|.+.+. ++..+.+++|+|+|||||||.+-..+..... ..+.+++.+....++
T Consensus 130 ~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 130 TEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 344555554 4677889999999999999988554433211 234588888877765
No 257
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.20 E-value=0.012 Score=60.39 Aligned_cols=49 Identities=31% Similarity=0.346 Sum_probs=35.3
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHH
Q 041899 18 VLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVA 66 (650)
Q Consensus 18 ~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~l 66 (650)
+..++..+.+++|+|||||||||.+-.++..... ....+++++....++
T Consensus 125 L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 125 LREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 3345677889999999999999988665533211 124588888887776
No 258
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.19 E-value=0.0059 Score=58.11 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=34.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
.++|.||+|+|||++..+++.+.. .++.+++++.. .....++.+++. .+|..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~-~~g~~v~~~s~-e~~~~~~~~~~~-~~g~~ 52 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL-ARGEPGLYVTL-EESPEELIENAE-SLGWD 52 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH-HCCCcEEEEEC-CCCHHHHHHHHH-HcCCC
Confidence 378999999999999888887753 34557777643 344555555553 34543
No 259
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.18 E-value=0.045 Score=58.87 Aligned_cols=122 Identities=25% Similarity=0.268 Sum_probs=66.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE--ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC--TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.+++++|++|+||||.+..+........+.++++ .=++|..+.+..++++...+.++- ... ..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~-----~~~----~~------ 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVF-----ALG----KG------ 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceE-----ecC----CC------
Confidence 3688999999999988766655421122334433 445777766666566555543321 000 00
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
..|..+...........++++||||=+- |....+.++..+..+.. ..++--+++++|+.
T Consensus 165 -~~P~~i~~~al~~~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t 224 (428)
T TIGR00959 165 -QSPVEIARRALEYAKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMT 224 (428)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence 0121222211111123568999999998 55444445555544443 34555567777775
No 260
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.034 Score=61.45 Aligned_cols=44 Identities=25% Similarity=0.448 Sum_probs=28.3
Q ss_pred cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 116 SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 116 ~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
..|.-.++.++||||+| .+..+..-++++.+-.-.+..++|+.+
T Consensus 113 ~~p~~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 113 YAPTKGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred hccccCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 34556689999999999 444455556666554444556666644
No 261
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.015 Score=65.43 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=28.5
Q ss_pred cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 116 SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 116 ~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
..|.+.++.++||||+|. +..+..-.+++.+-...+..++|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 345667889999999993 34444445565554445566666655
No 262
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.11 E-value=0.038 Score=60.24 Aligned_cols=45 Identities=22% Similarity=0.135 Sum_probs=27.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVA 71 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~ 71 (650)
+.+++.|++|+|||+++-.+..+... .++.+++|+.+ ..+..++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHH
Confidence 45899999999999877444332211 23447777644 44444444
No 263
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.11 E-value=0.036 Score=63.94 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=30.7
Q ss_pred cCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHH
Q 041899 116 SDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEK 168 (650)
Q Consensus 116 ~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~ 168 (650)
..+.-.++.++||||+| .+..+..-.++|.+-.-...+++|+. |-+...
T Consensus 113 ~~P~~gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~k 161 (944)
T PRK14949 113 YRPSRGRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQK 161 (944)
T ss_pred hhhhcCCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE--CCCchh
Confidence 33444678999999999 44555666666665444445666664 544443
No 264
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.10 E-value=0.034 Score=52.21 Aligned_cols=121 Identities=24% Similarity=0.311 Sum_probs=58.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec--chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEE
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ--PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKY 104 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~ 104 (650)
.+++.|++|+||||..-.+..... ..+.+++++- ++|....+...+.+...+.++ .... ..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~-~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~--------~~~~--~~------ 64 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK-KKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPV--------FEEG--EG------ 64 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEcCCCChHHHHHHHHhcccCCeEE--------EecC--CC------
Confidence 578999999999988766554332 2244555433 555444333333333222111 0000 00
Q ss_pred EChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCC
Q 041899 105 MTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLD 165 (650)
Q Consensus 105 ~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~ 165 (650)
..+..++........-.++++||+|.......+.+. +..+..+.. ..++-.+++++|...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~-l~~l~~l~~~~~~~~~~lVv~~~~~ 125 (173)
T cd03115 65 KDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENL-MEELKKIKRVVKPDEVLLVVDAMTG 125 (173)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHH-HHHHHHHHhhcCCCeEEEEEECCCC
Confidence 011222211111112346889999999833332222 333343333 235666777777653
No 265
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.09 E-value=0.037 Score=55.32 Aligned_cols=43 Identities=7% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 119 KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 119 ~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
....+.+||+|||| ++..|...++.+.+-......++|+..--
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEcCC
Confidence 45668999999999 66666666665555444556677765543
No 266
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.08 E-value=0.034 Score=64.17 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=87.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCC--cEEEEeCCCccccCcCC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGA--RKVVLATNIAETSLTID 293 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~--~kilvaT~i~e~gidip 293 (650)
.+.++|||..=.... +.|+..+. ..++.-.-+.|....++|+..++.|.... ...|++|-.-+.|||+-
T Consensus 1275 eghRvLIfTQMtkmL----DVLeqFLn-----yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLt 1345 (1958)
T KOG0391|consen 1275 EGHRVLIFTQMTKML----DVLEQFLN-----YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLT 1345 (1958)
T ss_pred cCceEEehhHHHHHH----HHHHHHHh-----hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccc
Confidence 477999996544333 33443332 13777888899999999999999997654 45788999999999999
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccc
Q 041899 294 GIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQED 355 (650)
Q Consensus 294 ~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 355 (650)
+.+.||- ||..-+ |.=-+.+.-|+-|.|++..=..|||+++...++.
T Consensus 1346 gADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEen 1392 (1958)
T KOG0391|consen 1346 GADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEEN 1392 (1958)
T ss_pred cCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHHH
Confidence 9999985 555422 3445677788888999998899999998776543
No 267
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.018 Score=63.80 Aligned_cols=50 Identities=24% Similarity=0.422 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
++..+...|...++.++||||+|. ++.+..-.+++.+-.-.+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 444555556677899999999993 33444445555544333455555544
No 268
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.08 E-value=0.011 Score=68.47 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=47.9
Q ss_pred CchHHHHHHHHH----HHcCCeEEEEcCCCChHHHHHH-HHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 10 PIYHYREQVLRA----VQENQVVVIVGETGSGKTTQIP-QYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 10 pl~~~q~~~l~~----l~~~~~vii~apTGsGKT~~ip-~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
|+|+.|.+.++. +.++++.++.+|||+|||..+. ..+.... .....+|++...|..=..|+.+.+.+
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 468899877765 5688999999999999993322 2222211 11225899999998888888877766
No 269
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.08 E-value=0.051 Score=59.18 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=24.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecc
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQP 62 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P 62 (650)
+.+++.||+|+|||+++-.+..+.... .+.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 459999999999997775444332111 2347777754
No 270
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.05 E-value=0.049 Score=61.29 Aligned_cols=50 Identities=24% Similarity=0.436 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+...+...|.+..+.+|||||+|. +..+..-.+++.+-.-.+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 344455567788899999999993 33344445555544445566677654
No 271
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.051 Score=57.74 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=27.9
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
...+...|...++.++||||+|. +..+..-.+++.+....+..++|+.+
T Consensus 108 ~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 108 LDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 33444455667789999999993 33333344555544344455555543
No 272
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.01 E-value=0.041 Score=61.30 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=28.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVA 71 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~ 71 (650)
+.++|.|++|+|||.++-.+..+.... .+.+++|+ +...++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~ 360 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFI 360 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHH
Confidence 348999999999998776555543221 24466665 4444444443
No 273
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.00 E-value=0.077 Score=60.10 Aligned_cols=135 Identities=17% Similarity=0.244 Sum_probs=81.8
Q ss_pred CchHHHHHHHHHH---H--cCCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEecchHHHHHHHHHHHHHHh---CC
Q 041899 10 PIYHYREQVLRAV---Q--ENQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQPRRVAAISVAARVSREM---GV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l---~--~~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~la~q~~~~v~~~~---~~ 80 (650)
....-|.++++.+ . ..+.++|.|.-|=|||..+-+++....... ..+|+|+.|+.+.+.++.+..-+-+ |.
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 3455566666554 2 234899999999999977765543322222 3599999999999999886665433 32
Q ss_pred ccCcEeeeeeccc--ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 81 KLGHEVGYSIRFE--DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 81 ~~g~~vg~~~~~~--~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
+-+ |.+....+ ....+...|.|..|.... ..-+++|||||= .+...++..++.. .+.+
T Consensus 291 ~~~--v~~d~~g~~~~~~~~~~~i~y~~P~~a~---------~~~DllvVDEAA--aIplplL~~l~~~-------~~rv 350 (758)
T COG1444 291 KRK--VAPDALGEIREVSGDGFRIEYVPPDDAQ---------EEADLLVVDEAA--AIPLPLLHKLLRR-------FPRV 350 (758)
T ss_pred ccc--cccccccceeeecCCceeEEeeCcchhc---------ccCCEEEEehhh--cCChHHHHHHHhh-------cCce
Confidence 211 11111001 111234457777775432 126899999997 5555555444432 3578
Q ss_pred EEccCC
Q 041899 159 ISSATL 164 (650)
Q Consensus 159 ~~SAT~ 164 (650)
+||.|+
T Consensus 351 ~~sTTI 356 (758)
T COG1444 351 LFSTTI 356 (758)
T ss_pred EEEeee
Confidence 999998
No 274
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.98 E-value=0.02 Score=56.03 Aligned_cols=102 Identities=19% Similarity=0.226 Sum_probs=53.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKY 104 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~ 104 (650)
+.++|.||+|+|||.++-.+..+... .++.+|+|+.. ..........+.. +
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~--~------------------------- 86 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD--G------------------------- 86 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT--T-------------------------
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc--c-------------------------
Confidence 35899999999999866554433221 23457777643 2333333322211 0
Q ss_pred EChHHHHHHHhcCCCCCCCceEEecccccCCcc---ccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 105 MTDGMVLREMLSDPKLESYSVLMVDEAHERTLS---TDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 105 ~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~---~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
....+.. .+..+++++||++|.-.-. .+.+..++..+... +.++|+.|...
T Consensus 87 -~~~~~~~------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~ 140 (219)
T PF00308_consen 87 -EIEEFKD------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRP 140 (219)
T ss_dssp -SHHHHHH------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-
T ss_pred -cchhhhh------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCC
Confidence 0111222 2457899999999943322 23444444444333 44666666554
No 275
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.98 E-value=0.063 Score=66.00 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=75.6
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHh--cc-cCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 9 LPIYHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHE--AG-YTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~--~~-~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
..+.+-|.+++..+.. ++.++|+|..|+||||.+-.++.. .. ...+..|+.+.|+--++..+.+ .|...
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e-----~Gi~A- 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS-----AGVDA- 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH-----hCchH-
Confidence 3678899999998874 589999999999999886544321 11 1234478889999888766542 23211
Q ss_pred cEeeeeecccccCCCCceEEEEChHHHHHH-----HhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 84 HEVGYSIRFEDCTSEKTVLKYMTDGMVLRE-----MLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 84 ~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~-----l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
.|-..|+.. ...+......++|||||+= ++....+..+++.+. ..+.|+|
T Consensus 908 ---------------------~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~--~~garvV 962 (1623)
T PRK14712 908 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 962 (1623)
T ss_pred ---------------------hhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--hCCCEEE
Confidence 111111110 0011122346899999997 555544444444332 2357888
Q ss_pred EEccCC
Q 041899 159 ISSATL 164 (650)
Q Consensus 159 ~~SAT~ 164 (650)
++.=+-
T Consensus 963 LVGD~~ 968 (1623)
T PRK14712 963 ASGDTD 968 (1623)
T ss_pred EEcchh
Confidence 877553
No 276
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.96 E-value=0.065 Score=66.74 Aligned_cols=124 Identities=18% Similarity=0.195 Sum_probs=76.6
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhcc---cCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 9 LPIYHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEAG---YTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~---~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
..+.+.|.+++..+.. ++.++|+|..|+||||++-.++.... ...+.+|+.+.|+--+|..+.+ .|...
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~A- 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVDA- 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcch-
Confidence 4588999999999876 47999999999999988765543211 1123478889999888765432 22210
Q ss_pred cEeeeeecccccCCCCceEEEEChHHHHHHH-----hcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 84 HEVGYSIRFEDCTSEKTVLKYMTDGMVLREM-----LSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 84 ~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l-----~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
.|-..++... ..+......++|||||+= ++....+..+++.+. ..+.|+|
T Consensus 1040 ---------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~--~~garvV 1094 (1747)
T PRK13709 1040 ---------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIA--AGGGRAV 1094 (1747)
T ss_pred ---------------------hhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhh--cCCCEEE
Confidence 1222222110 001112345899999997 666655555555432 2357888
Q ss_pred EEccC
Q 041899 159 ISSAT 163 (650)
Q Consensus 159 ~~SAT 163 (650)
++.=+
T Consensus 1095 LVGD~ 1099 (1747)
T PRK13709 1095 SSGDT 1099 (1747)
T ss_pred Eecch
Confidence 77655
No 277
>PLN03025 replication factor C subunit; Provisional
Probab=95.96 E-value=0.06 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++++.||+|+|||+.+-.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999887665544
No 278
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.96 E-value=0.057 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=19.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++|.||+|+|||+++-.++.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999888766654
No 279
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.95 E-value=0.013 Score=61.25 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=33.9
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAA 67 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 67 (650)
++..+.+++|+|||||||||.+-.++.. +....+++.+....++.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTll~aLl~~--i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTMSKTLISA--IPPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHHHHHHHcc--cCCCCCEEEECCCcccc
Confidence 4668899999999999999988655433 33445788888877653
No 280
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.94 E-value=0.024 Score=63.88 Aligned_cols=48 Identities=25% Similarity=0.429 Sum_probs=29.8
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
...+...+.-.++.++||||+| .++.+..-.++|.+-.-.+..++|+.
T Consensus 108 i~~~~~~p~~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 108 LDNVQYAPARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHhhhhcCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3444444556789999999999 44445556666655443444555554
No 281
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.94 E-value=0.047 Score=59.38 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=25.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+.+++.||+|+|||+++-.+..+. ...+.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l-~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHAL-RESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH-HHcCCCEEEeeH
Confidence 458999999999998776554432 223567777753
No 282
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.94 E-value=0.017 Score=64.46 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=26.4
Q ss_pred CCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 117 DPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 117 ~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.|...++.++||||+| .+..+..-.+++.+-...+...+|+.+
T Consensus 113 ~P~~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 113 APTQGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhhcCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3445678999999999 444444445555544444456666544
No 283
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.93 E-value=0.085 Score=55.81 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
+.+.+...+....+.++||||+| ..+....-.+++.+..-.++..+|++|...
T Consensus 129 l~~~~~~~~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 129 LISFFGLTAAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred HHHHhCcCcccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 44444445566788999999999 444555556666655444455566655543
No 284
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.93 E-value=0.021 Score=56.66 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=38.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+..+..++|.|++|+|||+..-+++.+.. .++.+++++.=. ....++.+++ ..+|..+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e-~~~~~~~~~~-~~~g~~~ 79 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGAL-KQGKKVYVITTE-NTSKSYLKQM-ESVKIDI 79 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHH-hCCCEEEEEEcC-CCHHHHHHHH-HHCCCCh
Confidence 44678899999999999999988887653 345577766433 3334555554 3355443
No 285
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.90 E-value=0.016 Score=55.96 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++++.||+|+||||++-.+..+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHHhc
Confidence 47999999999999887655444
No 286
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.041 Score=60.23 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 041899 28 VVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~ 48 (650)
+++.||+|+||||.+-.+...
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 699999999999888666544
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=95.90 E-value=0.063 Score=57.82 Aligned_cols=122 Identities=25% Similarity=0.288 Sum_probs=66.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE--ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC--TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv--~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
..++++|++|+||||.+..+........+.++++ .=+.|..+.+..+.+++..+.++- ... ..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~-----~~~----~~------ 165 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF-----PSG----DG------ 165 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEE-----ecC----CC------
Confidence 4688999999999987766654332221334433 556787776655566555543320 000 00
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
..+.-+...........++++||||=+= |....+.+...+..+.. ..|+--+++++|+.
T Consensus 166 -~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~ 225 (433)
T PRK10867 166 -QDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMT 225 (433)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEeccc
Confidence 1223333222221224568999999997 54444444444444433 34554567777775
No 288
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.88 E-value=0.017 Score=66.32 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=50.4
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+.+.|.+++... +..++|.|++|||||+.+..-+..... -...+|+++..|+.+|.++.+|+.+.++
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 678898888763 456889999999999665544333211 1234899999999999999999987665
No 289
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.88 E-value=0.038 Score=70.43 Aligned_cols=125 Identities=18% Similarity=0.139 Sum_probs=76.5
Q ss_pred CCCchHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHH---HHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 8 TLPIYHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQ---YLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~---~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
...+.+.|.+++..+.. ++.++|+|+.|+||||++-. .+.+.....+.+|+.+.|+-.++..+.+ .|...
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~-----~g~~a 1091 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS-----AGVQA 1091 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh-----cCCch
Confidence 34689999999999764 47889999999999988832 2223222234588899999888776642 12210
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHH---HhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLRE---MLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~---l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
.|-..++.. ....+.+...+++||||+= ++.+..+..+++.+. ..+.|+|+
T Consensus 1092 ----------------------~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~--~~~ak~vl 1145 (1960)
T TIGR02760 1092 ----------------------QTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQ--KSGSRAVS 1145 (1960)
T ss_pred ----------------------HhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhcc--CCCCEEEE
Confidence 111111110 0112235567899999997 566555555554432 34567777
Q ss_pred EccC
Q 041899 160 SSAT 163 (650)
Q Consensus 160 ~SAT 163 (650)
+.=+
T Consensus 1146 vGD~ 1149 (1960)
T TIGR02760 1146 LGDI 1149 (1960)
T ss_pred eCCh
Confidence 6544
No 290
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.86 E-value=0.029 Score=58.23 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=20.3
Q ss_pred HHHcC--CeEEEEcCCCChHHHHHHHHHH
Q 041899 21 AVQEN--QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 21 ~l~~~--~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+ .+.|+.||+|+||||++-.+..
T Consensus 42 ~v~~~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 42 AVEAGHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred HHhcCCCceeEEECCCCCCHHHHHHHHHH
Confidence 34444 4689999999999988765543
No 291
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.85 E-value=0.016 Score=60.04 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=37.5
Q ss_pred HHHHHHHH-HHHcCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHH
Q 041899 13 HYREQVLR-AVQENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVA 66 (650)
Q Consensus 13 ~~q~~~l~-~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~l 66 (650)
+.+.+.+. ++..+.+++|+|+|||||||.+-.++.... .....+++++....++
T Consensus 135 ~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 135 AAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 44555665 467889999999999999988865553321 1234578887777655
No 292
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.83 E-value=0.057 Score=55.17 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.5
Q ss_pred CeEEEEcCCCChHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIP 43 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip 43 (650)
..+++.||+|+|||+++-
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 379999999999997763
No 293
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.83 E-value=0.03 Score=61.55 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=18.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.++++||.|+||||.+-.+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999887666544
No 294
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.76 E-value=0.081 Score=50.46 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=22.5
Q ss_pred HHHHHHcC---CeEEEEcCCCChHHHHHHHHHHh
Q 041899 18 VLRAVQEN---QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 18 ~l~~l~~~---~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+.+.++ +..++.||+|+|||+.+-.+...
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~ 37 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKA 37 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44556555 45899999999999877665443
No 295
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.73 E-value=0.014 Score=57.48 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=25.4
Q ss_pred HHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 16 EQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 16 ~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+++.+.+.+ ++.++|.||.|+|||+++-.++...
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 444455554 5889999999999999887666554
No 296
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.071 Score=58.26 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=30.5
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+......|...++.++||||+| .+..+..-.+++.+-.-.+...+|+.+
T Consensus 105 ie~~~~~P~~~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 LENSCYLPISSKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHhccccCCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3444456777889999999999 344444455555554444455555543
No 297
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.69 E-value=0.025 Score=55.86 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=30.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+..+..+++.||+|+||||..-+++... ..++.+++++..
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF-LQNGYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH-HhCCCcEEEEeC
Confidence 4567899999999999999987877754 234456777653
No 298
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.68 E-value=0.014 Score=59.18 Aligned_cols=44 Identities=27% Similarity=0.334 Sum_probs=31.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVA 66 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 66 (650)
++.+.+++++|||||||||++-.++... .....+++++....+.
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i-~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEI-PPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHC-HTTTSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchHHHHHhhhc-cccccceEEeccccce
Confidence 4678999999999999999996665443 2223688888765544
No 299
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.68 E-value=0.12 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=16.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.||+|+|||+.+-.+..+
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 4555999999999887655443
No 300
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.64 E-value=0.08 Score=58.47 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=26.8
Q ss_pred HHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 113 EMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 113 ~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
.+...|.+.+..+|||||+|. ...+.+..+++.+....+...+|+.
T Consensus 107 ~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 107 KVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333456677899999999993 3334445555554443334444443
No 301
>PRK06620 hypothetical protein; Validated
Probab=95.63 E-value=0.038 Score=53.88 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=16.7
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~ 45 (650)
+.+++.||+|||||+++-.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45899999999999887643
No 302
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.62 E-value=0.027 Score=53.74 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=32.7
Q ss_pred hHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 12 YHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 12 ~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
.+.+.+.+.. +..+.+++|+|||||||||++-.++-. .....+++.+.-
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~--i~~~~~~i~ied 60 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAF--IPPDERIITIED 60 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh--cCCCCCEEEECC
Confidence 3455556655 678899999999999999988554432 223345555543
No 303
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.61 E-value=0.024 Score=64.81 Aligned_cols=70 Identities=19% Similarity=0.290 Sum_probs=53.3
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHH---HHhcccCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQY---LHEAGYTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~---l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
.-|+.+.|.+++.. ..+.++|.|..|||||+.+..- ++......+.+|+++..++.+|.++.+|+...+|
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 46899999998864 3456899999999999665433 2333223345999999999999999999977654
No 304
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.60 E-value=0.035 Score=63.29 Aligned_cols=65 Identities=23% Similarity=0.270 Sum_probs=49.4
Q ss_pred chHHHHHHH-HHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 11 IYHYREQVL-RAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 11 l~~~q~~~l-~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+..-|.+++ .++...+..+|.|-+|+||||.+..++.-. ...+++|+.+.-|..++..+-.++..
T Consensus 670 LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL-~~~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 670 LNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKIL-VALGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred cCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHH-HHcCCeEEEEehhhHHHHHHHHHHhc
Confidence 455555554 557778889999999999998877665433 33477999999999999988877754
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.11 Score=58.16 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 112 REMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 112 ~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
..+...|...++.++||||+| .+..+..-.+++.+-.-.+.+.+|+.+
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHhhhhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 344445667889999999999 444555555666554444455555544
No 306
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.59 E-value=0.037 Score=51.39 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
+...+...+.-..+.++||||+| .++.+..-+++|.+-.-.++..+|++|-.+
T Consensus 90 i~~~~~~~~~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 90 IIEFLSLSPSEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHCTSS-TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHhcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 34444455556789999999999 556666666777665555667777766554
No 307
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.59 E-value=0.041 Score=58.54 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
..++|.||+|+|||+.+-.++.
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~ 62 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK 62 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999987765554
No 308
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.58 E-value=0.038 Score=62.14 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=41.8
Q ss_pred CcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEE
Q 041899 276 ARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFR 345 (650)
Q Consensus 276 ~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~ 345 (650)
.++.|++-.++-.|-|-|+|=.+.- .....|..+=.|.+||.-|-. .|..++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIck------------------L~~S~SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICK------------------LRSSGSEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEE------------------ecCCCcchHHHHHhccceeeeeccccceec
Confidence 4899999999999999999877664 333567778899999999976 565555
No 309
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.084 Score=58.77 Aligned_cols=49 Identities=22% Similarity=0.406 Sum_probs=30.5
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+..+...|...++.++||||+|. +..+..-.+++.+-...+...+|+.+
T Consensus 108 ~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 108 LDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 34444556677899999999993 33334445565554444556666654
No 310
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.55 E-value=0.12 Score=52.60 Aligned_cols=121 Identities=26% Similarity=0.323 Sum_probs=75.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec--chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ--PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.+++++|-.|+||||.+....... ..++.+|++.. --|+.|.++-+.+.+..|.++ +... ...+.+.+.
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l-~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v-------I~~~-~G~DpAaVa 210 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYL-KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV-------ISGK-EGADPAAVA 210 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHH-HHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE-------EccC-CCCCcHHHH
Confidence 368899999999998887665543 23455666644 368888887777777666543 1111 112222222
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCc------eEEEEccCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDL------KLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~------kii~~SAT~ 164 (650)
| +-+ ....-+++++|++|=+- |..+-.-|+.-++++.+ ..++. .++.+-||.
T Consensus 211 f-------DAi-~~Akar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAtt 269 (340)
T COG0552 211 F-------DAI-QAAKARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATT 269 (340)
T ss_pred H-------HHH-HHHHHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEccc
Confidence 2 111 11235689999999999 77777667777776665 33333 466668998
No 311
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.55 E-value=0.052 Score=61.02 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+..+...|...++.++||||+| .+..+..-.+++.+-.-.+...+|+.+
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHhCcccCCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 3444455666789999999999 344444455555543333445555544
No 312
>PRK09087 hypothetical protein; Validated
Probab=95.54 E-value=0.086 Score=51.88 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
++.+++.||+|||||+++-.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~ 65 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWR 65 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4459999999999998886544
No 313
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.53 E-value=0.27 Score=50.02 Aligned_cols=125 Identities=20% Similarity=0.270 Sum_probs=70.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEE-E-----ecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCC
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVG-C-----TQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTS 97 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~il-v-----~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~ 97 (650)
+.+.+++.||-|||||+.+.-.+.+. ...+.+.+ | ++--+.+..++++.++.++... +...|
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~-q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~g---------- 115 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDI-QENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFG---------- 115 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhH-HhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeec----------
Confidence 56789999999999998887777662 22222222 2 2224556666776666655421 11111
Q ss_pred CCceEEEECh--HHHHHHHhcCCCCCCC-ceEEecccccCCc--cccHHHHHHHHHHhcCCCceEEEEccCCCh
Q 041899 98 EKTVLKYMTD--GMVLREMLSDPKLESY-SVLMVDEAHERTL--STDILLGIFKDLVRLRSDLKLLISSATLDA 166 (650)
Q Consensus 98 ~~~~i~~~T~--~~Ll~~l~~~~~l~~~-~~iIiDE~Her~~--~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 166 (650)
-.|+ ..|+..+..+..-... =++|+||++-... +.-.+..++......+..+-++++|.-+|.
T Consensus 116 ------sfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 116 ------SFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred ------ccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0111 3455555554444444 3567889983222 223444555555555666777888877754
No 314
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.042 Score=50.69 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=21.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..++.+.|.||+|+||||++-...-
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 35788999999999999988866543
No 315
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.51 E-value=0.027 Score=57.50 Aligned_cols=53 Identities=23% Similarity=0.180 Sum_probs=37.9
Q ss_pred hHHHHHHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHH
Q 041899 12 YHYREQVLRAV-QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVA 66 (650)
Q Consensus 12 ~~~q~~~l~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 66 (650)
.+-+.+++..+ ....+++|+|.|||||||.+-.+...- ....+++++.-+.+|
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i--~~~eRvItiEDtaEL 212 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFI--DSDERVITIEDTAEL 212 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcC--CCcccEEEEeehhhh
Confidence 34455555554 445699999999999999987665543 334499999887666
No 316
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.51 E-value=0.019 Score=62.43 Aligned_cols=56 Identities=27% Similarity=0.360 Sum_probs=38.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
+..+..++|.|++|+|||+++-+++.... ..+.+++|+.- .+...|+..+. +.+|.
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~~g~~vlYvs~-Ees~~qi~~ra-~rlg~ 132 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLA-AAGGKVLYVSG-EESASQIKLRA-ERLGL 132 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEc-cccHHHHHHHH-HHcCC
Confidence 34577899999999999999988877643 33567888764 34455666554 44554
No 317
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.51 E-value=0.079 Score=61.77 Aligned_cols=46 Identities=20% Similarity=0.393 Sum_probs=29.4
Q ss_pred HhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 114 MLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 114 l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+...+...++.++||||+| .++.+..-.++|.+-.-...+.+|+.+
T Consensus 112 ~~~~p~~~~~KV~IIDEad--~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 112 AFFAPAESRYKIFIIDEAH--MVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHhchhcCCceEEEEechh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 3344556789999999999 444455555665554444556666654
No 318
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.50 E-value=0.024 Score=59.04 Aligned_cols=45 Identities=27% Similarity=0.284 Sum_probs=32.6
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAA 67 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 67 (650)
++..+.+++|+|+|||||||.+-..+.. .....+|+.+.-+.++.
T Consensus 156 ~v~~~~nili~G~tgSGKTTll~aL~~~--ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTFTNAALRE--IPAIERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHhh--CCCCCeEEEecCCCccc
Confidence 3568899999999999999998554433 33455787776655543
No 319
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.43 E-value=0.062 Score=48.83 Aligned_cols=91 Identities=23% Similarity=0.358 Sum_probs=52.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
+..++.+.|.||.||||||++-...-.. ....|.|.+- .. ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~-~~--------------------~~i~~~~~---------- 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWG-ST--------------------VKIGYFEQ---------- 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEEC-Ce--------------------EEEEEEcc----------
Confidence 3578899999999999998886553322 1223444331 10 12333221
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHH
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDL 148 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~ 148 (650)
.+.|...+.......+.+-+++++||-- .+++.+....+...+
T Consensus 71 ---lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l 113 (144)
T cd03221 71 ---LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEAL 113 (144)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHH
Confidence 4555544433333345566899999998 566655444444433
No 320
>PRK04195 replication factor C large subunit; Provisional
Probab=95.38 E-value=0.14 Score=56.72 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+.+++.||+|+|||+.+-.+..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999998887665554
No 321
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.087 Score=54.49 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
+.+.+...|...++.++||||+| .++....-+++|.+-.-.++..+|+.|.-
T Consensus 101 l~~~~~~~p~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 101 ISQKLALTPQYGIAQVVIVDPAD--AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred HHHHHhhCcccCCcEEEEeccHh--hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 44455556777789999999999 44555556677755444455666666654
No 322
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.37 E-value=0.019 Score=43.45 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+++++|.||+||||||++-.+..
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999998876543
No 323
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.28 E-value=0.19 Score=55.90 Aligned_cols=140 Identities=18% Similarity=0.211 Sum_probs=82.7
Q ss_pred cCCeEEEEcCCCChHHHHHH-HHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc-cCcEe----eeeecccccCC
Q 041899 24 ENQVVVIVGETGSGKTTQIP-QYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK-LGHEV----GYSIRFEDCTS 97 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip-~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~-~g~~v----g~~~~~~~~~~ 97 (650)
+.+..++..|==.|||+.+. .+........+.+|+++.|.+..+..+.+++...+... .+..+ |-.+.+.-...
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~nG 332 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPDG 332 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecCC
Confidence 55678899999999996444 33322212246699999999999999999987743211 11111 11110011111
Q ss_pred CCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhC
Q 041899 98 EKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFN 174 (650)
Q Consensus 98 ~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~ 174 (650)
..+.|.|.+.. ++. -=..++++|||||++ +..+.+..++-.+ .. .+.++|.+|.|-..+.-..|+.
T Consensus 333 ~kstI~FaSar-------ntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l-~~-~n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 333 SRSTIVFASSH-------NTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFL-NQ-TNCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred CccEEEEEecc-------CCCCccCCcccEEEEechhh--CCHHHHHHHHHHH-hc-cCccEEEEecCCCCccchHHHH
Confidence 22356665321 111 123689999999994 3445555555322 22 3889999999976665555553
No 324
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.24 E-value=0.026 Score=54.37 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=25.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecch
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPR 63 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 63 (650)
..++|+|||||||||.+-.++.......+++++.+.-.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~ 39 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDP 39 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCC
Confidence 35899999999999988655544322234566665543
No 325
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.13 Score=58.14 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 112 REMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 112 ~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
..+...+.+.++.+|||||+| .+..+..-.+++.+-.-.+...+|+.
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~--~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHhhCcccCCeEEEEEeChH--hCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 344455677889999999999 33334444455544333334444443
No 326
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.23 E-value=0.018 Score=56.97 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=17.6
Q ss_pred EEEEcCCCChHHHHHHHHHHh
Q 041899 28 VVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~ 48 (650)
++|.|++|||||+.+-..+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 479999999999988777655
No 327
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.18 E-value=0.038 Score=54.35 Aligned_cols=42 Identities=33% Similarity=0.384 Sum_probs=30.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCC-----CCeEEEecch
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTK-----HGKVGCTQPR 63 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~ilv~~P~ 63 (650)
+..++.+.|.||+|+|||+++.+++....... +.+++++...
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 45678999999999999988887766542222 1567776553
No 328
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.18 E-value=0.15 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHhcCCCCCCCceEEeccccc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHE 133 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~He 133 (650)
...+...|.+.+..++||||+|.
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~ 138 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHM 138 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhh
Confidence 44455567788899999999993
No 329
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.17 E-value=0.037 Score=64.35 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=50.6
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc---cCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG---YTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~---~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+.+.|.+++.. ....++|.|..|||||+.+..-+.... --...+|+++..|+.+|.++.+|+.+.++
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 67889888875 345699999999999966554433221 11234899999999999999999988655
No 330
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.084 Score=55.09 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 109 MVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 109 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
-+.+.+...+....+.++|||++| .++....-+++|.+-.-.++..+|+.|.-
T Consensus 119 ~l~~~~~~~~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 119 ALLDFCGVGTHRGGARVVVLYPAE--ALNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHhccCCccCCceEEEEechh--hcCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 455556566777889999999999 44555556667765544445555555544
No 331
>CHL00181 cbbX CbbX; Provisional
Probab=95.16 E-value=0.061 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
+-++++.||+|+|||+++-.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3458999999999998776553
No 332
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.12 E-value=0.037 Score=63.97 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=50.2
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+.+.|.+++.. ....++|.|+.|||||+.+..-+..... ....+|+++..++.+|.++.+|+.+.++
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 56788888765 3567999999999999666554433211 1234899999999999999999988665
No 333
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.10 E-value=0.15 Score=57.26 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+|++||.|+|||+.+-.+...
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999887655543
No 334
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.08 E-value=0.2 Score=57.50 Aligned_cols=40 Identities=28% Similarity=0.465 Sum_probs=24.4
Q ss_pred cCCCchHHHHHHHHH-----HHc---CCeEEEEcCCCChHHHHHHHHH
Q 041899 7 KTLPIYHYREQVLRA-----VQE---NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~-----l~~---~~~vii~apTGsGKT~~ip~~l 46 (650)
..||-++-|.+-+.. +.+ ++.+.|.|+||+|||..+-..+
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 346666555544433 322 1335699999999997665554
No 335
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.083 Score=58.84 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=27.6
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
...+...|...++.++||||+|. +..+..-++++.+-.-.+...+|+++
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 34444556667889999999993 33333344444443333344444444
No 336
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.06 E-value=0.15 Score=54.53 Aligned_cols=51 Identities=10% Similarity=0.228 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
+.+.+...|...++.++||||+|. ++....-.+++.+ ...++-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~L-Eep~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAV-EEPPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHh-hcCCCCCeEEEEEC
Confidence 344444556667889999999993 3333334455544 33333344555554
No 337
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=95.01 E-value=0.044 Score=55.85 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=41.4
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecc
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQP 62 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P 62 (650)
..|..+-|..-++++.++..++-.||-|+|||++.-....+.. ...=.+|+.+-|
T Consensus 126 I~~kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 126 IIPKTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred eEecChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 4688899999999999999999999999999965443333321 111238888888
No 338
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.00 E-value=0.026 Score=65.27 Aligned_cols=119 Identities=18% Similarity=0.108 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeec
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIR 91 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~ 91 (650)
.+|--+++-.+.=++--|....||=|||..+.+.++-..+..++.-+|++.-- ||.-=++.+...+ .-+|.+||....
T Consensus 138 ~~ydVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDY-LA~RDaewm~p~y-~flGLtVg~i~~ 215 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDY-LAQRDKEWMNPVF-EFHGLSVGVILN 215 (1025)
T ss_pred cccchHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechH-hhhhhHHHHHHHH-HHhCCeeeeeCC
Confidence 33444466554434445899999999995554444434455555556665543 4433333333322 113444553221
Q ss_pred ----ccccCCCCceEEEEChHH-----HHHHHhcCC---CCCCCceEEecccc
Q 041899 92 ----FEDCTSEKTVLKYMTDGM-----VLREMLSDP---KLESYSVLMVDEAH 132 (650)
Q Consensus 92 ----~~~~~~~~~~i~~~T~~~-----Ll~~l~~~~---~l~~~~~iIiDE~H 132 (650)
.+....-.++|+|+|+.- |...+...+ ..+.+.+.||||++
T Consensus 216 ~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvD 268 (1025)
T PRK12900 216 TMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVD 268 (1025)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechh
Confidence 112223468899999953 333333333 35778999999999
No 339
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.99 E-value=0.082 Score=58.36 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHc---------CCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 13 HYREQVLRAVQE---------NQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 13 ~~q~~~l~~l~~---------~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
|+|+-++..+.. -+.+++.-|=|-|||+++....+...+ ..+..|+++.+++.-|..+.+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 477777777652 235788889999999776655332222 22458999999999999999887764432
Q ss_pred cc--CcEeeeeecccccCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCc
Q 041899 81 KL--GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 81 ~~--g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 155 (650)
.. ....+..+ .......|.+-.++..++-+..++ .=.+.+++|+||+|+.. .+-+...++.-...+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~--~~~~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHK--DDELYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCC--CHHHHHHHHhhhccCCCc
Confidence 11 10010000 000112222222222222122222 12246899999999543 333455566555556666
Q ss_pred eEEE-EccCC
Q 041899 156 KLLI-SSATL 164 (650)
Q Consensus 156 kii~-~SAT~ 164 (650)
.++. .||..
T Consensus 155 l~~~ISTag~ 164 (477)
T PF03354_consen 155 LIIIISTAGD 164 (477)
T ss_pred eEEEEeCCCC
Confidence 5554 45544
No 340
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.90 E-value=0.029 Score=55.94 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=26.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
...-++|.|||||||||.+..++-.-.......|+-+.
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIE 161 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIE 161 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEec
Confidence 45568999999999998887776554333344555443
No 341
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.90 E-value=0.042 Score=58.16 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=35.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
+..+..++|.|++|+|||+++.++..... ..+++++|+.-. +...|+..+.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a-~~g~~VlYvs~E-Es~~qi~~Ra 129 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLA-KRGGKVLYVSGE-ESPEQIKLRA 129 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEECC-cCHHHHHHHH
Confidence 34578899999999999999988876543 234578887543 2344555443
No 342
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.82 E-value=0.22 Score=52.68 Aligned_cols=37 Identities=30% Similarity=0.512 Sum_probs=23.7
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHH
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDL 148 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~ 148 (650)
+...+...|...+..+|||||+|. +..+....+++.+
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~l 141 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTL 141 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHH
Confidence 445555667778889999999993 2333334444444
No 343
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.81 E-value=0.17 Score=59.60 Aligned_cols=122 Identities=22% Similarity=0.287 Sum_probs=58.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEEC
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMT 106 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T 106 (650)
++++.||||+|||.++-.. .+..+.....++.+ ..-.. +-...+....|.+.| .+|| ..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~L-a~~l~~~~~~~~~~-dmse~--~~~~~~~~l~g~~~g-yvg~----------------~~ 656 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALAL-AELLYGGEQNLITI-NMSEF--QEAHTVSRLKGSPPG-YVGY----------------GE 656 (852)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHHhCCCcceEEE-eHHHh--hhhhhhccccCCCCC-cccc----------------cc
Confidence 5899999999999665433 33323222233333 21111 111223333343332 2332 12
Q ss_pred hHHHHHHHhcCCCCCCCceEEecccccCCcc-ccHHHHHHHHHHhcC-------CCceEEEEccCCChHHHHhhh
Q 041899 107 DGMVLREMLSDPKLESYSVLMVDEAHERTLS-TDILLGIFKDLVRLR-------SDLKLLISSATLDAEKFSAYF 173 (650)
Q Consensus 107 ~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~-~d~ll~~l~~~~~~~-------~~~kii~~SAT~~~~~~~~~~ 173 (650)
.|.|...+... .+++|+|||++.-... .+.++.++..-.-.. -.-.+++||..+..+.+.+.+
T Consensus 657 ~g~L~~~v~~~----p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRRK----PYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHhC----CCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 34555555443 4789999999832222 122333332211000 012577787777666655543
No 344
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.81 E-value=0.1 Score=48.75 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=35.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 28 VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
++|.|++|||||+.+.+++.. .+.+++|+.-.+..-.++.+|+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999998888765 245788887776666777777654
No 345
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.79 E-value=0.074 Score=53.70 Aligned_cols=54 Identities=24% Similarity=0.354 Sum_probs=34.0
Q ss_pred CCchHHHHHHHHHH-H-cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecch
Q 041899 9 LPIYHYREQVLRAV-Q-ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPR 63 (650)
Q Consensus 9 lpl~~~q~~~l~~l-~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 63 (650)
|-..+.|.+.+..+ . .+..++|+|||||||||.+-.++... .....+++.+.-.
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i-~~~~~~iitiEdp 117 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL-NTPEKNIITVEDP 117 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh-CCCCCeEEEECCC
Confidence 33455566666543 3 34679999999999999886555432 2233466666443
No 346
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.77 E-value=0.3 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=18.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.||+|+|||+.+-.+..+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999887655443
No 347
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.17 Score=47.41 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=26.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..++.+.|.||.||||||++-.+.-.. ....|.+.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~~ 61 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILI 61 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEE
Confidence 4588999999999999998886654332 223455544
No 348
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.73 E-value=0.17 Score=54.69 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.||+|+||||++-.+..
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999988866543
No 349
>PTZ00293 thymidine kinase; Provisional
Probab=94.71 E-value=0.036 Score=53.29 Aligned_cols=40 Identities=25% Similarity=0.344 Sum_probs=29.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
.|...++.||-+||||+.+...+..... .+.+++++-|..
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~-ag~kv~~~kp~~ 42 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTY-SEKKCVVIKYSK 42 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHH-cCCceEEEEecc
Confidence 3567799999999999977777665433 355788887753
No 350
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.70 E-value=0.19 Score=55.45 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=88.6
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCC-cEEEEeCCCccccCcCCC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGA-RKVVLATNIAETSLTIDG 294 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~-~kilvaT~i~e~gidip~ 294 (650)
.+..+|+|..-.+.+.-+.++|.-+ ++.-+.+.|+....+|..+..+|.... .-.|++|-+.+-|||+-.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr---------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTA 1113 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR---------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTA 1113 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh---------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccc
Confidence 4678999987666666666666543 788888999999999999999987644 567889999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccc
Q 041899 295 IKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQED 355 (650)
Q Consensus 295 v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~ 355 (650)
.+.||- ||..=+ |.--.+++-|+-|-|-+..=.+|+|.++...++.
T Consensus 1114 ADTViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk 1159 (1185)
T KOG0388|consen 1114 ADTVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEK 1159 (1185)
T ss_pred cceEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHHH
Confidence 999985 443211 3334566777777777777889999998876543
No 351
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.70 E-value=0.16 Score=47.95 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=52.0
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCc
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKT 100 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~ 100 (650)
.+..++.+.|.||.||||||++-.+.-.. ....|.|.+-- ..++|......
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g----------------------~~i~~~~q~~~------ 71 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDG----------------------ITPVYKPQYID------ 71 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECC----------------------EEEEEEcccCC------
Confidence 45688999999999999999887544222 22345554421 11333211000
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHH
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDL 148 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~ 148 (650)
.+.|+--+.......+.+-+++++||-- .+++......+...+
T Consensus 72 ----LSgGq~qrv~laral~~~p~lllLDEPt-s~LD~~~~~~l~~~l 114 (177)
T cd03222 72 ----LSGGELQRVAIAAALLRNATFYLFDEPS-AYLDIEQRLNAARAI 114 (177)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHH
Confidence 4445433322222234456899999997 556654444444433
No 352
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.70 E-value=0.047 Score=60.32 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=41.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+..+..++|.||+|+|||++..+++.+.. .++.+++|+. .-+...|+.++. +.+|.+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~-~~ge~~~y~s-~eEs~~~i~~~~-~~lg~~ 316 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENAC-ANKERAILFA-YEESRAQLLRNA-YSWGID 316 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEE-eeCCHHHHHHHH-HHcCCC
Confidence 34678899999999999999999988763 3455777764 455566777665 335543
No 353
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.69 E-value=0.068 Score=62.21 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=50.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhc---ccCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEA---GYTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
.+.+.|.+++... ...++|.|..|||||+.+..-+... .--...+|+++.-|+.+|.++.+|+.+..+
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3788898888753 4578999999999996554433321 111234899999999999999999988665
No 354
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.66 E-value=0.07 Score=58.03 Aligned_cols=66 Identities=29% Similarity=0.389 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-----CCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 13 HYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-----TKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 13 ~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
+.|.+|+.. ..+..+||+|..||||||++..-+....+ -.++.|+++-|.+....-+. +|--++|+
T Consensus 215 kEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis-~VLPeLGe 285 (747)
T COG3973 215 KEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS-RVLPELGE 285 (747)
T ss_pred HhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH-Hhchhhcc
Confidence 334444432 36778999999999999887654332211 12345999999999877666 45466665
No 355
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.66 E-value=0.24 Score=55.88 Aligned_cols=50 Identities=22% Similarity=0.424 Sum_probs=30.3
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+...+...|...++.++||||+| .+..+..-.+++.+-.-.+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 34444455677889999999999 334444445555544434455555544
No 356
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.66 E-value=0.18 Score=52.47 Aligned_cols=51 Identities=12% Similarity=0.202 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 109 MVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 109 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
-+...+...|......++|+|++| .++....-.+++.+....++..+|+.|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~--~Ld~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAE--SMNLQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechh--hCCHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 345555566777889999999999 555555555666554433344444433
No 357
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.66 E-value=0.1 Score=59.08 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=18.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.||.|+|||+.+-.+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~ 61 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKS 61 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 45699999999999887665544
No 358
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.65 E-value=0.11 Score=49.17 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=60.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccC--CCC
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCT--SEK 99 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~--~~~ 99 (650)
+..++.+.|.||.||||||++-.+.-.. ....|.+.+- -. .+... ...+.. .++|........ +-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~-g~-~~~~~-~~~~~~--------~i~~~~q~~~~~~~tv~ 92 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLD-GV-PVSDL-EKALSS--------LISVLNQRPYLFDTTLR 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEEC-CE-EHHHH-HHHHHh--------hEEEEccCCeeecccHH
Confidence 4578999999999999998886654332 2234555442 11 11111 111111 123221100000 000
Q ss_pred ce-EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 100 TV-LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 100 ~~-i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.+ ..-.+.|...+.......+.+-+++++||.- .+++......+...+.....+.-+|+.|
T Consensus 93 ~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~-~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 93 NNLGRRFSGGERQRLALARILLQDAPIVLLDEPT-VGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred HhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCc-ccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 00 2223445443333333345666899999998 5666544444444443333344444444
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.65 E-value=0.17 Score=47.73 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||.||||||++-..+
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578899999999999999986554
No 360
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.60 E-value=0.089 Score=54.27 Aligned_cols=55 Identities=24% Similarity=0.343 Sum_probs=37.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+..+..+.|.||+|||||++..+++.+.. ..+++++++-.-..+-.+ .++.+|.+
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~-~~g~~v~yId~E~~~~~~----~a~~lGvd 106 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPV----YARKLGVD 106 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEcccchhHHH----HHHHcCCC
Confidence 45678999999999999999888877653 346678877554444332 23445544
No 361
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.59 E-value=0.06 Score=55.77 Aligned_cols=41 Identities=29% Similarity=0.467 Sum_probs=28.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
+..+.+++|+|||||||||++-.++.. +....+++++....
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~--~~~~~~iv~ied~~ 181 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDE--IPKDERIITIEDTR 181 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHcc--CCccccEEEEcCcc
Confidence 567899999999999999988554432 23344666664433
No 362
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.21 Score=55.20 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=28.9
Q ss_pred CCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 117 DPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 117 ~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
.|....+.++||||+| .+..+..-++++.+-.-.+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 5667889999999999 444555555666555444556666654
No 363
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.57 E-value=0.056 Score=56.87 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=28.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRV 65 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 65 (650)
.+..++|+|||||||||.+-.++.......+++++.+.-..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh
Confidence 467899999999999998865554332122456776654443
No 364
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.55 E-value=0.047 Score=63.34 Aligned_cols=120 Identities=18% Similarity=0.086 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHH---HHHHhCCccCcEeee
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAAR---VSREMGVKLGHEVGY 88 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~---v~~~~~~~~g~~vg~ 88 (650)
.+|--+++-.+.=++--|....||=|||..+.+.++-..+..++.-+|++.- -||.-=++. +-+.+|..+|.....
T Consensus 169 ~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVND-YLA~RDaewmgply~fLGLsvg~i~~~ 247 (1112)
T PRK12901 169 VHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVND-YLAKRDSEWMGPLYEFHGLSVDCIDKH 247 (1112)
T ss_pred cccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEech-hhhhccHHHHHHHHHHhCCceeecCCC
Confidence 3444456666554555699999999999555444443445545555555553 344332333 333445544432221
Q ss_pred e-ecccccCCCCceEEEEChHHH-----HHHHhcCC---CCCCCceEEecccc
Q 041899 89 S-IRFEDCTSEKTVLKYMTDGMV-----LREMLSDP---KLESYSVLMVDEAH 132 (650)
Q Consensus 89 ~-~~~~~~~~~~~~i~~~T~~~L-----l~~l~~~~---~l~~~~~iIiDE~H 132 (650)
. ...+.+..-.++|+|+|+.-| ...+..++ ..+.+.+.||||++
T Consensus 248 ~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvD 300 (1112)
T PRK12901 248 QPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVD 300 (1112)
T ss_pred CCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechh
Confidence 1 111122234689999998533 33333222 45678899999999
No 365
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.53 E-value=0.28 Score=58.02 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=42.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEEC
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMT 106 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T 106 (650)
.+++.||||+|||+++- ++....+..+...+.+ ........ ..+...+|.+.| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~-aLa~~l~~~~~~~i~i-d~se~~~~--~~~~~LiG~~pg-y~g~~~---------------- 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELCK-ALANFMFDSDDAMVRI-DMSEFMEK--HSVSRLVGAPPG-YVGYEE---------------- 658 (857)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHhhcCCCcEEEE-EhHHhhhh--hhHHHHhCCCCc-ccccch----------------
Confidence 68999999999998774 4444433333333333 22222211 123344554433 333321
Q ss_pred hHHHHHHHhcCCCCCCCceEEecccc
Q 041899 107 DGMVLREMLSDPKLESYSVLMVDEAH 132 (650)
Q Consensus 107 ~~~Ll~~l~~~~~l~~~~~iIiDE~H 132 (650)
.+.+...+.. ..+++|++||++
T Consensus 659 ~g~l~~~v~~----~p~~vLllDEie 680 (857)
T PRK10865 659 GGYLTEAVRR----RPYSVILLDEVE 680 (857)
T ss_pred hHHHHHHHHh----CCCCeEEEeehh
Confidence 1223333322 236899999999
No 366
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.53 E-value=0.055 Score=55.31 Aligned_cols=66 Identities=23% Similarity=0.264 Sum_probs=39.2
Q ss_pred HHHHHHHHc----CCeEEEEcCCCChHHHHHHHHHHhcccCC-CCeEE-EecchHHHHHHHHHHHHHHhCCc
Q 041899 16 EQVLRAVQE----NQVVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVG-CTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 16 ~~~l~~l~~----~~~vii~apTGsGKT~~ip~~l~~~~~~~-~~~il-v~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+++.+.+.. .+.+.|+|+.|+|||+++-.+..+..... -..++ +.........++.+.+...++..
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 455666655 56899999999999999888775522111 12333 33333333355556666666543
No 367
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.50 E-value=0.093 Score=58.86 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=23.8
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHH
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDL 148 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~ 148 (650)
...+...|...++.++||||+| .+..+..-.+++.+
T Consensus 108 ~~~v~~~p~~~~~kViIIDE~~--~Lt~~a~naLLKtL 143 (559)
T PRK05563 108 RDKVKYAPSEAKYKVYIIDEVH--MLSTGAFNALLKTL 143 (559)
T ss_pred HHHHhhCcccCCeEEEEEECcc--cCCHHHHHHHHHHh
Confidence 3444455677889999999999 33444445555554
No 368
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.43 E-value=0.28 Score=53.34 Aligned_cols=150 Identities=11% Similarity=0.032 Sum_probs=87.6
Q ss_pred CCCchHHHHHHHHHHH----------cCCeEEEEcCCCChHHHHHHHHHHhc---ccCCCCeEEEecchHHHHHHHHHHH
Q 041899 8 TLPIYHYREQVLRAVQ----------ENQVVVIVGETGSGKTTQIPQYLHEA---GYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~----------~~~~vii~apTGsGKT~~ip~~l~~~---~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
.+++-|||.-++-+|. .-+..+|.-|-+-||||++..+.... ....+..+.++.|+..-+.+....+
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHH
Confidence 5788999999999986 11357899999999998877443321 1234558999999998888877665
Q ss_pred HHHhCCccCcEeeeeecccccCCCCce-EEEEChHHHHHHHhcCC---CCCCCceEEecccccCCccccHHHHHHHHHHh
Q 041899 75 SREMGVKLGHEVGYSIRFEDCTSEKTV-LKYMTDGMVLREMLSDP---KLESYSVLMVDEAHERTLSTDILLGIFKDLVR 150 (650)
Q Consensus 75 ~~~~~~~~g~~vg~~~~~~~~~~~~~~-i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~ 150 (650)
+.-....- ..+.......++. |.+.-....++.+..++ .-.+..+.|+||.|+..-.. -.+..++.-+.
T Consensus 139 r~mv~~~~------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~~~~~g~~ 211 (546)
T COG4626 139 RDMVKRDD------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYSEAKGGLG 211 (546)
T ss_pred HHHHHhCc------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHHHHHhhhc
Confidence 44221111 0111111111111 22222222223233333 34467899999999655433 33444455455
Q ss_pred cCCCceEEEEccCC
Q 041899 151 LRSDLKLLISSATL 164 (650)
Q Consensus 151 ~~~~~kii~~SAT~ 164 (650)
.+++..++..|-..
T Consensus 212 ar~~~l~~~ITT~g 225 (546)
T COG4626 212 ARPEGLVVYITTSG 225 (546)
T ss_pred cCcCceEEEEecCC
Confidence 67777788777644
No 369
>PRK10436 hypothetical protein; Provisional
Probab=94.30 E-value=0.095 Score=57.06 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHH--HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 9 LPIYHYREQVLRAV--QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 9 lpl~~~q~~~l~~l--~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
|-+.+.+.+.+..+ ..+..++|+|||||||||.+..++.+. .....+|+-+.
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~-~~~~~~i~TiE 253 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTL-NTAQINICSVE 253 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhh-CCCCCEEEEec
Confidence 34555565556554 356789999999999998875554443 22334554443
No 370
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.27 E-value=0.23 Score=57.19 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
.++++.||+|+||||++-.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999988765543
No 371
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.15 Score=58.09 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=30.0
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+...+...|...++.++||||+| .+..+..-++++.+-.-.+...+|+.+
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~--~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVH--MLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChh--hCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 44455556777899999999999 344444555555543333334444433
No 372
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.34 Score=51.27 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=23.9
Q ss_pred CCchHHHHHHHHH-----HH--cCCeEEEEcCCCChHHHHHHHHH
Q 041899 9 LPIYHYREQVLRA-----VQ--ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 9 lpl~~~q~~~l~~-----l~--~~~~vii~apTGsGKT~~ip~~l 46 (650)
+|-+..|-+-+.. +. ...+++|.|+||+|||..+-..+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~ 63 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVM 63 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHH
Confidence 6666655444333 22 23469999999999996554433
No 373
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.21 E-value=0.15 Score=51.64 Aligned_cols=27 Identities=33% Similarity=0.690 Sum_probs=22.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..++.++++||||+|||..+-.++..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 467889999999999999888776644
No 374
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.27 Score=52.79 Aligned_cols=107 Identities=23% Similarity=0.383 Sum_probs=62.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEEC
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMT 106 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T 106 (650)
.+++.||+|||||.++..+.....+ ..|=++.|......+=..+++.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~F---PFvKiiSpe~miG~sEsaKc~~------------------------------ 586 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDF---PFVKIISPEDMIGLSESAKCAH------------------------------ 586 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCC---CeEEEeChHHccCccHHHHHHH------------------------------
Confidence 5899999999999888887766533 3566677755443322222221
Q ss_pred hHHHHHHHhcCCCCCCCceEEecccccCCcc--------ccHHHHHHHHHHhcCC--CceEEEEccCCChHHHHh
Q 041899 107 DGMVLREMLSDPKLESYSVLMVDEAHERTLS--------TDILLGIFKDLVRLRS--DLKLLISSATLDAEKFSA 171 (650)
Q Consensus 107 ~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~--------~d~ll~~l~~~~~~~~--~~kii~~SAT~~~~~~~~ 171 (650)
++....|..-+.+++||+|++. |-++ +...+..+.-+++..| +-|++++..|-..+-+++
T Consensus 587 ----i~k~F~DAYkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~ 656 (744)
T KOG0741|consen 587 ----IKKIFEDAYKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE 656 (744)
T ss_pred ----HHHHHHHhhcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH
Confidence 1222234445567899999987 3322 2344445555544333 346777776655444443
No 375
>PHA00149 DNA encapsidation protein
Probab=94.16 E-value=0.5 Score=46.91 Aligned_cols=144 Identities=14% Similarity=0.182 Sum_probs=85.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEECh
Q 041899 28 VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTD 107 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T~ 107 (650)
-+|.|.-|-|||+.+-..+......++.+.+++--...-....-+-++.++-..+.. -+.+.+....-....|-+.-+
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kgeqfiYLRr~k~El~~k~~Ff~d~~~~~~~~--~F~Vkg~ki~~~~k~igy~i~ 97 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKGEQFIYLRRYKSELKKKSKFFADIAQEFPNT--EFEVKGRKIYIKGKLIGYAIP 97 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcCcEEEEEEecchhhhhhhhhhHHHHHhCCCC--ceEEEccEEEEcCeEEEEEEe
Confidence 356699999999999888777767777788887554443333334444443222211 111111111112233334444
Q ss_pred HHHHHHHhcCCCCCCCceEEeccccc-CC------ccccHHHHHHHHHHhcCCCceEEEEccCC-ChHHHHhhhC
Q 041899 108 GMVLREMLSDPKLESYSVLMVDEAHE-RT------LSTDILLGIFKDLVRLRSDLKLLISSATL-DAEKFSAYFN 174 (650)
Q Consensus 108 ~~Ll~~l~~~~~l~~~~~iIiDE~He-r~------~~~d~ll~~l~~~~~~~~~~kii~~SAT~-~~~~~~~~~~ 174 (650)
-.-++.+ ..+...++.+|++||+-- ++ -..+.++.++..+.+.+.+++++++|-.. ....+-.||+
T Consensus 98 LS~~q~~-Ks~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~~~~NPyF~yfg 171 (331)
T PHA00149 98 LSTWQAL-KSSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAVSIVNPYFLYFG 171 (331)
T ss_pred hhhHHhh-cccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcccccchhhheec
Confidence 3333333 334678899999999982 22 22456778888888888899999998765 3445555555
No 376
>PRK09354 recA recombinase A; Provisional
Probab=94.15 E-value=0.12 Score=53.92 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=38.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+..+..+.|.||+|||||++..+++.+.. ..+++++|+-.-..+-.. .++.+|..+
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~-~~G~~~~yId~E~s~~~~----~a~~lGvdl 112 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQ-KAGGTAAFIDAEHALDPV----YAKKLGVDI 112 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchHHH----HHHHcCCCH
Confidence 34467999999999999999988887653 346678887665544432 334455543
No 377
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=94.14 E-value=0.099 Score=62.44 Aligned_cols=109 Identities=19% Similarity=0.262 Sum_probs=85.8
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC--CcEEEEeCCCccccCcCCCeE
Q 041899 219 DILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG--ARKVVLATNIAETSLTIDGIK 296 (650)
Q Consensus 219 ~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g--~~kilvaT~i~e~gidip~v~ 296 (650)
++|+|.+-.....-+...+... ++....++|+++...|...++.|.++ ..-.+++|...+.|+|.-..+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~---------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~ 783 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL---------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGAD 783 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc---------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccc
Confidence 7999999988888777777664 45688899999999999999999875 566778888999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcccccc
Q 041899 297 YVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQE 354 (650)
Q Consensus 297 ~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~ 354 (650)
.||. .+.|.+++...|...||-|.| +=.+|++.+++..++
T Consensus 784 ~vi~------------------~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 784 TVIL------------------FDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred eEEE------------------eccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 9997 444666666666666665544 667888888776543
No 378
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.13 E-value=0.13 Score=48.66 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=25.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..++.+.|.||.||||||++-.+.-.. ....|.|.+
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~ 58 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILL 58 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEE
Confidence 4578899999999999998876654322 223455544
No 379
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.12 E-value=0.14 Score=52.96 Aligned_cols=52 Identities=13% Similarity=0.209 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
+.+.+...|....+.++|||++| .++....-+++|.+-.-.++.-+|+.|..
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~--~m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAE--RLTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHhhccccCCceEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 44555566777889999999999 44455556667666544444545554443
No 380
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.11 E-value=0.34 Score=50.03 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
+.+++.||+|+|||+++-.+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999977765443
No 381
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.24 Score=51.57 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=30.6
Q ss_pred HHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 112 REMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 112 ~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
+.....+...++.+|||||++ .++.+..-++++.+..-..+..+|+.+-
T Consensus 99 ~~~~~~~~~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 99 EFLSESPLEGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HHhccCCCCCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 333334445789999999999 5555665566665544455555555553
No 382
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.05 E-value=0.14 Score=56.29 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 109 MVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 109 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
.+...+...|...++.++||||+| .+..+..-.+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 344455556777889999999999 3334344444554433333443333
No 383
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.05 E-value=0.18 Score=46.85 Aligned_cols=125 Identities=18% Similarity=0.233 Sum_probs=63.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
+..++.+.|.||.||||||++-.+.-.. ....|.+.+-- .........+.. . ..+||...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g-~~~~~~~~~~~~----~----~~i~~~~q---------- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDG-KEVSFASPRDAR----R----AGIAMVYQ---------- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECC-EECCcCCHHHHH----h----cCeEEEEe----------
Confidence 4678999999999999999887554322 22344554321 000000000000 0 12333221
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEccCCChHHHHhh
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISSATLDAEKFSAY 172 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~~~~~~~~~ 172 (650)
.+.|+.-+.......+.+-+++++||-- .+++.+....+...+.... .+.-+|+.|- +.+.+.++
T Consensus 83 ---LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh--~~~~~~~~ 148 (163)
T cd03216 83 ---LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIRRLRAQGVAVIFISH--RLDEVFEI 148 (163)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHHHHCCCEEEEEeC--CHHHHHHh
Confidence 5556544433333345556899999997 6666555444444443332 2333444433 44444444
No 384
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.05 E-value=0.22 Score=59.93 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=25.4
Q ss_pred HHHHHHH---HcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 16 EQVLRAV---QENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 16 ~~~l~~l---~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.+ ...+.++|+||.|+||||.+-+++..
T Consensus 20 ~rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~ 55 (903)
T PRK04841 20 ERLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAG 55 (903)
T ss_pred hHHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 3444444 35578999999999999999998853
No 385
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.04 E-value=0.1 Score=60.80 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+.+.|.+++... ...++|.|..|||||+.+..-+..... -...+|+++.-|+.+|.++.+|+.+.++
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 5 LNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 678898888753 456999999999999665544332211 1234899999999999999999987654
No 386
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.03 E-value=0.15 Score=47.82 Aligned_cols=125 Identities=23% Similarity=0.327 Sum_probs=59.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec-chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCC--
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ-PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSE-- 98 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~-P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~-- 98 (650)
+..++.+.|.||.||||||++-...-.. ....|.+.+-- +..... .... ..++|..........
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~----~~~~--------~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEP----EEVK--------RRIGYLPEEPSLYENLT 89 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccch----Hhhh--------ccEEEEecCCccccCCc
Confidence 4578899999999999999886543322 12344554311 110000 1111 123332211100000
Q ss_pred -CceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEc
Q 041899 99 -KTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISS 161 (650)
Q Consensus 99 -~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~S 161 (650)
...+. .+.|..-+.........+-+++++||-- .+++.+....+...+.... ...-+|+.|
T Consensus 90 v~~~~~-LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tiii~t 152 (173)
T cd03230 90 VRENLK-LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRELKKEGKTILLSS 152 (173)
T ss_pred HHHHhh-cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 00111 4555443333333334556899999998 6666655444444444332 233444444
No 387
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.97 E-value=0.063 Score=53.32 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=39.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
+..+..++|.||+|||||++..+++.+.. .++.+++|+. +..-..++.+++. .+|.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs-~ee~~~~i~~~~~-~~g~ 73 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVA-LEEHPVQVRRNMA-QFGW 73 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEE-eeCCHHHHHHHHH-HhCC
Confidence 45678999999999999999999888763 3455677765 3345556666653 3454
No 388
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.95 E-value=0.24 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=20.6
Q ss_pred HHcC--CeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQEN--QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~--~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.++ ..+|+.||+|+|||+++-.+...
T Consensus 157 ieq~~ipSmIlWGppG~GKTtlArlia~t 185 (554)
T KOG2028|consen 157 IEQNRIPSMILWGPPGTGKTTLARLIAST 185 (554)
T ss_pred HHcCCCCceEEecCCCCchHHHHHHHHhh
Confidence 4455 46899999999999888665543
No 389
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.93 E-value=0.066 Score=56.41 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=22.8
Q ss_pred HHHHHH-cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 18 VLRAVQ-ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 18 ~l~~l~-~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+.+.+. .+..++|+|||||||||.+-.++.
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~ 156 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIR 156 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHH
Confidence 444444 678999999999999988855443
No 390
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=93.92 E-value=0.36 Score=49.98 Aligned_cols=147 Identities=16% Similarity=0.191 Sum_probs=78.8
Q ss_pred cCCCchHHHHHHHHHHHcCCe------EEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc-----hHHHHHHHHHHHH
Q 041899 7 KTLPIYHYREQVLRAVQENQV------VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP-----RRVAAISVAARVS 75 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~------vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P-----~r~la~q~~~~v~ 75 (650)
...|-++.|-..+..+..+++ ++|.|.+|+|||+.+-+++..... ..+++.+ .+.+-.++...+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC----cceeeehHHhccHHHHHHHHHHHhc
Confidence 467889999999988876653 489999999999998888766522 2233332 3444444443331
Q ss_pred HHhCCccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEeccccc-CCccccHHHHHHHHHHhcCCC
Q 041899 76 REMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHE-RTLSTDILLGIFKDLVRLRSD 154 (650)
Q Consensus 76 ~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~He-r~~~~d~ll~~l~~~~~~~~~ 154 (650)
.. ..-|..++. ....+++.-.++..+........--+||+|-++. |+..+-.+-.+++--.-...+
T Consensus 82 --~~----d~dg~~~~~-------~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~ 148 (438)
T KOG2543|consen 82 --LA----DKDGDKVEG-------DAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEP 148 (438)
T ss_pred --cC----CCchhhhhh-------HHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCC
Confidence 00 000101110 0111122222222221111223346899999993 555554544444433334444
Q ss_pred ceEEEEccCCChHHHH
Q 041899 155 LKLLISSATLDAEKFS 170 (650)
Q Consensus 155 ~kii~~SAT~~~~~~~ 170 (650)
.-.|++|+++-...+-
T Consensus 149 ~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 149 TIVIILSAPSCEKQYL 164 (438)
T ss_pred ceEEEEeccccHHHhh
Confidence 5577889987554443
No 391
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.92 E-value=0.24 Score=57.65 Aligned_cols=120 Identities=20% Similarity=0.191 Sum_probs=69.4
Q ss_pred chHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHh-CCccC
Q 041899 11 IYHYREQVLRAV----QENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREM-GVKLG 83 (650)
Q Consensus 11 l~~~q~~~l~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~-~~~~g 83 (650)
++.||..-++.+ +++-|-|+.-+-|-|||.|..-++...... +=|.-+|++|+-.+.+= .-.+.+.. |.++-
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnW-EMElKRwcPglKIL 694 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNW-EMELKRWCPGLKIL 694 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhh-hHHHhhhCCcceEe
Confidence 678888888775 467788999999999996554444332222 22356888898776531 11222111 22221
Q ss_pred cEeeee-----ecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccc
Q 041899 84 HEVGYS-----IRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAH 132 (650)
Q Consensus 84 ~~vg~~-----~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~H 132 (650)
...|-. -|-.....+..++.|+++..+++.+..- .-.++.++|+||+|
T Consensus 695 TYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF-krkrWqyLvLDEaq 747 (1958)
T KOG0391|consen 695 TYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF-KRKRWQYLVLDEAQ 747 (1958)
T ss_pred eecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH-Hhhccceeehhhhh
Confidence 122210 1111222344577777777776654322 24568999999999
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.92 E-value=0.55 Score=47.44 Aligned_cols=33 Identities=21% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHc-C--CeEEEEcCCCChHHHHHHHHHHh
Q 041899 16 EQVLRAVQE-N--QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 16 ~~~l~~l~~-~--~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+..+.+ + +++++.|||||||||++-.+.-.
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~ 134 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARI 134 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCc
Confidence 344455443 3 58899999999999988766543
No 393
>CHL00176 ftsH cell division protein; Validated
Probab=93.91 E-value=0.31 Score=55.41 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-....+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999877655443
No 394
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.84 E-value=0.54 Score=49.97 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQP 62 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P 62 (650)
.+-++|.||+|+|||.++-.+..+... ..+.+++++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 567999999999999777555443311 12235666543
No 395
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.13 Score=48.55 Aligned_cols=117 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec-chHHHHHHHHHHHHHHhCCccCcEeeeeecccccC---C
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ-PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCT---S 97 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~-P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~---~ 97 (650)
+..++.+.|.||.||||||++-.+.-.. ....|.|.+-- +..... +....... .++|........ +
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~-~~~~~~~~--------~i~~~~q~~~~~~~~t 92 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLE-DELPPLRR--------RIGMVFQDFALFPHLT 92 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccc-hhHHHHhh--------cEEEEecCCccCCCCC
Confidence 3578899999999999999886654222 22245555421 100000 00011111 123221111100 1
Q ss_pred CCceEEE-EChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHH
Q 041899 98 EKTVLKY-MTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLV 149 (650)
Q Consensus 98 ~~~~i~~-~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~ 149 (650)
-...+.+ .+.|..-+.......+.+-.++|+||-- .+++.+....+...+.
T Consensus 93 ~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLK 144 (178)
T ss_pred HHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHH
Confidence 1112222 5666554443333345566899999998 5666554444444333
No 396
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.74 E-value=0.11 Score=58.38 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHH-HHHHHH
Q 041899 10 PIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVA-ARVSRE 77 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~-~~v~~~ 77 (650)
-..|||.++++++... +.++++.++-+|||.++..++....-...+.+++++|+..+|.... .++...
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 4679999999998765 5799999999999986666555443344568999999999998876 455443
No 397
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.69 E-value=0.29 Score=52.14 Aligned_cols=29 Identities=31% Similarity=0.495 Sum_probs=20.9
Q ss_pred HHHHHHcCC---eEEEEcCCCChHHHHHHHHH
Q 041899 18 VLRAVQENQ---VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 18 ~l~~l~~~~---~vii~apTGsGKT~~ip~~l 46 (650)
+...+.+++ .+++.||+|+|||+.+-.+.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la 60 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCARILA 60 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 334444543 68899999999998876653
No 398
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.65 E-value=0.08 Score=50.52 Aligned_cols=24 Identities=46% Similarity=0.747 Sum_probs=20.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~ 45 (650)
+..++++.|+||.||||||++--.
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 468899999999999999887543
No 399
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.60 E-value=0.51 Score=46.33 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=31.6
Q ss_pred HHcCC-eEEEEcCCCChHHHHHHHHHHhcccCCCCeEE-EecchHHHHHHHHHHHHHHh
Q 041899 22 VQENQ-VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVG-CTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 22 l~~~~-~vii~apTGsGKT~~ip~~l~~~~~~~~~~il-v~~P~r~la~q~~~~v~~~~ 78 (650)
+..++ .+.++|+-|||||+..- ++.+. ...+..++ ++--.......+.+++...+
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s-~~~d~~~~v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLAS-LNEDQVAVVVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHh-cCCCceEEEEecCcchhHHHHHHHHHHHh
Confidence 55666 89999999999997776 55444 22333333 33333333344444554433
No 400
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.54 E-value=0.14 Score=57.68 Aligned_cols=41 Identities=24% Similarity=0.337 Sum_probs=28.1
Q ss_pred CCCchHHHHHHHHHH-H-cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 8 TLPIYHYREQVLRAV-Q-ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l-~-~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.|.+.+.+.+.+..+ . .+..++++|||||||||.+..++..
T Consensus 297 ~lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~ 339 (564)
T TIGR02538 297 KLGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNI 339 (564)
T ss_pred HcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHh
Confidence 344556665555553 3 4677899999999999887554443
No 401
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.51 E-value=0.31 Score=55.11 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
...+...|.+.+..++||||+|.. .....-.+++.+-.-.+...+|+.+
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344445577889999999999943 3333334444433333344455544
No 402
>PRK05973 replicative DNA helicase; Provisional
Probab=93.49 E-value=0.074 Score=52.44 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=37.6
Q ss_pred HHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHH
Q 041899 20 RAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 20 ~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
..+..+..++|.|+||+|||+...+++.+.. .++.+++|+.- -.-..++.+++.
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~Ge~vlyfSl-Ees~~~i~~R~~ 112 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAM-KSGRTGVFFTL-EYTEQDVRDRLR 112 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH-hcCCeEEEEEE-eCCHHHHHHHHH
Confidence 3445788999999999999999988887664 33556666532 223456666663
No 403
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.49 E-value=0.13 Score=56.58 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCchHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 9 LPIYHYREQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 9 lpl~~~q~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
|.+.+.+.+.+..+. .+..++|+|||||||||.+-.++... ...+.+++.+
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l-~~~~~~iiTi 276 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRL-NTPERNILTV 276 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhcc-CCCCCcEEEE
Confidence 445566666666543 34568999999999998886554433 2223345554
No 404
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.48 E-value=0.14 Score=53.72 Aligned_cols=52 Identities=27% Similarity=0.284 Sum_probs=36.1
Q ss_pred HHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHH
Q 041899 13 HYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVA 66 (650)
Q Consensus 13 ~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 66 (650)
+.+.+++.. +..+.+++|+|+|||||||++..++.. .....+++++.-..++
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~--i~~~~riv~iEd~~El 217 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLAL--VAPDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHcc--CCCCCcEEEECCccee
Confidence 445555555 566789999999999999988655433 2334577777766655
No 405
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.44 E-value=0.22 Score=57.44 Aligned_cols=76 Identities=14% Similarity=0.221 Sum_probs=62.0
Q ss_pred HHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 041899 207 TTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNI 285 (650)
Q Consensus 207 ~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i 285 (650)
.+..+.....++++++.+||..-+.++++.|.+.....+ .....+. +||.|+..+++.+++.+.+|..+|+|+|+.
T Consensus 115 ~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~--~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 115 LLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG--SLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC--Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 334444444578899999999999999999998876555 2345555 999999999999999999999999999975
No 406
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.44 E-value=0.42 Score=51.22 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHH
Confidence 356999999999999776555443
No 407
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.34 E-value=0.42 Score=54.25 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=28.9
Q ss_pred HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 111 LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 111 l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
...+...|...++.++||||+|.. ..+..-.+++.+-.-.+... +++.+|
T Consensus 110 i~~~~~~P~~~~~KVvIIdea~~L--s~~a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 110 IEQVRIPPQIGKYKIYIIDEVHML--SQAAFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred HHHHhhCcccCCcEEEEEECcccC--CHHHHHHHHHHHhCCCCCeE-EEEEeC
Confidence 344456678889999999999933 33334444444333333344 444444
No 408
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.34 E-value=0.45 Score=49.77 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+...+...|...+..++||||+|. .+.+..-++++.+-.-.++..+|+.+
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 344444556677899999999993 33334445555544434445555533
No 409
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.34 E-value=0.37 Score=51.83 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=69.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHH-HHHHHHHHHHHHhCCccCcEeeeeeccc--cc-C-CC
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRV-AAISVAARVSREMGVKLGHEVGYSIRFE--DC-T-SE 98 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~-la~q~~~~v~~~~~~~~g~~vg~~~~~~--~~-~-~~ 98 (650)
+..++.|+.|||||+.+...+...... ++.+++|+-|+.- +...+...+...+.. .|...-+..... .. . ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEecCC
Confidence 457899999999997666555544344 5668999988776 556666666543321 121111111100 00 0 11
Q ss_pred CceEEEECh-HHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 99 KTVLKYMTD-GMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 99 ~~~i~~~T~-~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
.+.|+|..- +--- .+ .....++.+.+||+.+.+ .+....++.++.. ......+++|.|++
T Consensus 81 g~~i~f~g~~d~~~-~i---k~~~~~~~~~idEa~~~~--~~~~~~l~~rlr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 81 GKKFIFKGLNDKPN-KL---KSGAGIAIIWFEEASQLT--FEDIKELIPRLRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred CeEEEeecccCChh-Hh---hCcceeeeehhhhhhhcC--HHHHHHHHHHhhc-cCCccEEEEEcCcC
Confidence 344555332 1000 00 123446899999999653 3344444444322 11222478888883
No 410
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.33 E-value=0.18 Score=53.52 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.1
Q ss_pred HHHHcCCeEEEEcCCCChHHHHHHHH
Q 041899 20 RAVQENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 20 ~~l~~~~~vii~apTGsGKT~~ip~~ 45 (650)
+-+.++.|++..||+|+|||+++-.+
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 44678999999999999999665543
No 411
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.30 E-value=0.26 Score=46.24 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=25.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..++.+.|.||.||||||++-...-.. ....|.|.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~ 61 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRL 61 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEE
Confidence 4578899999999999999886554332 223445543
No 412
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.22 E-value=0.071 Score=53.07 Aligned_cols=44 Identities=14% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 18 VLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 18 ~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
++.-+..++.++|.|+||+|||+.+-+++.......+.+++++.
T Consensus 6 ~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 6 LTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred hhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 33446678899999999999998888887765444355777765
No 413
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.21 E-value=0.18 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-.+..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999887655443
No 414
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.17 E-value=0.26 Score=45.88 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..++.+.|.||.||||||++-.+.-
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G 49 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhc
Confidence 45889999999999999998866543
No 415
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.17 E-value=0.095 Score=50.97 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=21.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||+||||||++-.+-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4688999999999999999986653
No 416
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.15 E-value=0.65 Score=48.52 Aligned_cols=37 Identities=35% Similarity=0.433 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
....+++-.....+..|+|.|++|+||++++- ++...
T Consensus 9 ~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr-~iH~~ 45 (329)
T TIGR02974 9 LEVLEQVSRLAPLDRPVLIIGERGTGKELIAA-RLHYL 45 (329)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCChHHHHHH-HHHHh
Confidence 34455555566678889999999999997654 44443
No 417
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.14 E-value=0.13 Score=54.35 Aligned_cols=43 Identities=28% Similarity=0.305 Sum_probs=27.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRV 65 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~ 65 (650)
..+..++|+|||||||||.+-.++...... ...+++.+.-..+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 456789999999999998885544332111 2346666644433
No 418
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.13 E-value=0.24 Score=45.07 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=17.4
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
-.+.|+|++|+||||++....
T Consensus 6 mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHH
Confidence 358999999999999886554
No 419
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.09 E-value=0.21 Score=61.64 Aligned_cols=66 Identities=15% Similarity=0.172 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
.+.|.+++.. .+++++|.|..|||||+.+..-+...... .-.+++++.=|+.+|.++.+|+.+.+.
T Consensus 3 t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 3 TDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5678888873 67889999999999997665544432221 123799999999999999999988664
No 420
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.03 E-value=1 Score=47.51 Aligned_cols=127 Identities=16% Similarity=0.153 Sum_probs=52.9
Q ss_pred EEEcCCCChHHHHHHHHHHhcccCCC--CeEEEecchHHHHHH-HHH---HHHHHhCCccCcEeeeeeccccc--CCCCc
Q 041899 29 VIVGETGSGKTTQIPQYLHEAGYTKH--GKVGCTQPRRVAAIS-VAA---RVSREMGVKLGHEVGYSIRFEDC--TSEKT 100 (650)
Q Consensus 29 ii~apTGsGKT~~ip~~l~~~~~~~~--~~ilv~~P~r~la~q-~~~---~v~~~~~~~~g~~vg~~~~~~~~--~~~~~ 100 (650)
++.++.|+|||+.+...+........ ..+++. |+...+.. +.. .+...... .. ...+.-..+.. .....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~nG~ 77 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WF-EIKFNEWNDRKIILPNGS 77 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TT-S--EEEE-SSEEEETTS-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hc-CcccccCCCCcEEecCce
Confidence 57899999999887776665544444 355555 65554444 222 22111111 11 11111000110 12444
Q ss_pred eEEEEChHH--HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 101 VLKYMTDGM--VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 101 ~i~~~T~~~--Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
.|.+.+.+- -...+.. ..++++++||+-. ...+.....+............+..|-|.
T Consensus 78 ~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 78 RIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred EEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 566666331 1122222 4678999999762 22233444444444444434333555555
No 421
>PRK13764 ATPase; Provisional
Probab=93.00 E-value=0.16 Score=56.93 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=22.6
Q ss_pred HHHHHH-HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 17 QVLRAV-QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 17 ~~l~~l-~~~~~vii~apTGsGKT~~ip~~l 46 (650)
++++.+ ..+.+++|+|||||||||.+..++
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~ 278 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFAQALA 278 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHH
Confidence 344544 457889999999999999885544
No 422
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.94 E-value=0.16 Score=57.67 Aligned_cols=33 Identities=27% Similarity=0.527 Sum_probs=26.4
Q ss_pred HHHHHHHHH---cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 15 REQVLRAVQ---ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 15 q~~~l~~l~---~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..+++.+. ..+-++|++|.|+||||++.++..
T Consensus 24 R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~ 59 (894)
T COG2909 24 RPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRE 59 (894)
T ss_pred cHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHH
Confidence 455666655 447799999999999999999975
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.93 E-value=0.086 Score=46.02 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=17.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
+++|.|++||||||++-...-.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999888655443
No 424
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=92.93 E-value=0.45 Score=50.47 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCceEEecccccCCccccHHHHHHHHHHh---cCCCceEEEEccCC-ChHHHHhhhC
Q 041899 122 SYSVLMVDEAHERTLSTDILLGIFKDLVR---LRSDLKLLISSATL-DAEKFSAYFN 174 (650)
Q Consensus 122 ~~~~iIiDE~Her~~~~d~ll~~l~~~~~---~~~~~kii~~SAT~-~~~~~~~~~~ 174 (650)
..-+||||-+..+....+++...+..... ...-..||++|... ..+.+.+.+.
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLP 204 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALP 204 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCC
Confidence 35799999999777666776666555433 34567899999887 5566776654
No 425
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.37 Score=49.52 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=21.4
Q ss_pred HHHHHH--HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 16 EQVLRA--VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 16 ~~~l~~--l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++++. |..-+-|++.||+|+|||.++ .++..
T Consensus 174 PElF~~~GI~PPKGVLLYGPPGTGKTLLA-kAVA~ 207 (406)
T COG1222 174 PELFEELGIDPPKGVLLYGPPGTGKTLLA-KAVAN 207 (406)
T ss_pred HHHHHHcCCCCCCceEeeCCCCCcHHHHH-HHHHh
Confidence 344444 345577999999999999544 44443
No 426
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=92.90 E-value=0.14 Score=44.88 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAA 67 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 67 (650)
+.+.+.+..++++++.|+-||||||.+-.++...+... -+..||=.++
T Consensus 6 ~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~----~V~SPTF~l~ 53 (123)
T PF02367_consen 6 KKLAQILKPGDVILLSGDLGAGKTTFVRGLARALGIDE----EVTSPTFSLV 53 (123)
T ss_dssp HHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT--S--------TTTTSE
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCCCC----CcCCCCeEEE
Confidence 45667778889999999999999998876665543221 5666765544
No 427
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.86 E-value=0.35 Score=52.60 Aligned_cols=135 Identities=19% Similarity=0.161 Sum_probs=67.7
Q ss_pred EEcCCCChHHHHHHHHHHhcccCCC-CeEEEecchHHHHHHHHHHH----HHH--hCCc--cCc-Eee-eeecccccCCC
Q 041899 30 IVGETGSGKTTQIPQYLHEAGYTKH-GKVGCTQPRRVAAISVAARV----SRE--MGVK--LGH-EVG-YSIRFEDCTSE 98 (650)
Q Consensus 30 i~apTGsGKT~~ip~~l~~~~~~~~-~~ilv~~P~r~la~q~~~~v----~~~--~~~~--~g~-~vg-~~~~~~~~~~~ 98 (650)
....||||||.+....+++. +.+| ...++.|..-....-....+ ... +.+. .+. .+. -.+..-+.-++
T Consensus 2 f~matgsgkt~~ma~lil~~-y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILEC-YKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHHH-HHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 35689999997766666654 2222 24555555433322211111 111 1111 111 111 11111122445
Q ss_pred CceEEEEChHHHHHHHhcCC-------CCCCCce-EEecccccCCccc-----c------HHHHHHHHHHhcCCCceEEE
Q 041899 99 KTVLKYMTDGMVLREMLSDP-------KLESYSV-LMVDEAHERTLST-----D------ILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 99 ~~~i~~~T~~~Ll~~l~~~~-------~l~~~~~-iIiDE~Her~~~~-----d------~ll~~l~~~~~~~~~~kii~ 159 (650)
...|.|+|.+-|...+.... .+.+..+ .+-||+|.-...+ | -..+.++...+..++--++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 67899999988876665433 2444454 5669999221111 1 11223333444567777888
Q ss_pred EccCCC
Q 041899 160 SSATLD 165 (650)
Q Consensus 160 ~SAT~~ 165 (650)
.|||++
T Consensus 161 f~at~~ 166 (812)
T COG3421 161 FSATIP 166 (812)
T ss_pred hhhcCC
Confidence 999984
No 428
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.83 E-value=0.37 Score=45.45 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+|.||+|+|||.++..+.+.
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~ 45 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFV 45 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999887665544
No 429
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.79 E-value=0.31 Score=54.59 Aligned_cols=31 Identities=19% Similarity=0.411 Sum_probs=21.6
Q ss_pred HHHHHHcC---CeEEEEcCCCChHHHHHHHHHHh
Q 041899 18 VLRAVQEN---QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 18 ~l~~l~~~---~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+...+.++ +..++.||.|+|||+.+-.+...
T Consensus 28 L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~ 61 (563)
T PRK06647 28 LKHSIESNKIANAYIFSGPRGVGKTSSARAFARC 61 (563)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33445554 34799999999999887665544
No 430
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.76 E-value=0.092 Score=51.71 Aligned_cols=57 Identities=26% Similarity=0.246 Sum_probs=35.7
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
..+..++|.||+|+|||++..+++.+.....+.+++++.- ..-..++.+++. .+|.+
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~-s~g~d 73 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMK-SFGWD 73 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHH-TTTS-
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHH-HcCCc
Confidence 4678999999999999999999988764331446666542 223355554543 34543
No 431
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.71 E-value=1.3 Score=45.94 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 109 MVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 109 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
-+.+.+...|....+.++||||+| .++....-+++|.+- ..++..+|+.|.
T Consensus 111 ~i~~~l~~~p~~~~~kVvII~~ae--~m~~~aaNaLLK~LE-EPp~~~fILi~~ 161 (314)
T PRK07399 111 EIKRFLSRPPLEAPRKVVVIEDAE--TMNEAAANALLKTLE-EPGNGTLILIAP 161 (314)
T ss_pred HHHHHHccCcccCCceEEEEEchh--hcCHHHHHHHHHHHh-CCCCCeEEEEEC
Confidence 456666667778899999999999 334444445555543 344555555554
No 432
>PF12846 AAA_10: AAA-like domain
Probab=92.63 E-value=0.12 Score=52.99 Aligned_cols=43 Identities=30% Similarity=0.398 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAI 68 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 68 (650)
|.+++|.|+||||||+.+-.++... ...+..++++=|......
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~-~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL-IRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHcCCCEEEEcCCchHHH
Confidence 4679999999999998887555443 445667888877654443
No 433
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.55 E-value=0.33 Score=54.49 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=26.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..|+.+.|+||+||||||++-..+-.. ....|.|.+
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i 394 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTL 394 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEE
Confidence 3588999999999999999886665332 223445543
No 434
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.55 E-value=0.16 Score=51.29 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+....++++..+..+..+++.||+|+|||+++-.+.
T Consensus 7 ~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 7 VKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 344556777778899999999999999998776554
No 435
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=92.53 E-value=0.15 Score=51.20 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCC-CCeEEEecchHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTK-HGKVGCTQPRRVAA 67 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~-~~~ilv~~P~r~la 67 (650)
..+|.||||||||-++--.+....+.. ...|+++.|.+-.+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCC
Confidence 478899999999955554444333333 34899999987654
No 436
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.51 E-value=0.15 Score=51.28 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+..+..++|.||+|+|||++..+++.+.. .++.+++|+.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a-~~Ge~vlyis 71 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQA-SRGNPVLFVT 71 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHH-hCCCcEEEEE
Confidence 34678899999999999999988877653 3355777764
No 437
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.47 E-value=0.51 Score=51.52 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=21.2
Q ss_pred HHHHHcC---CeEEEEcCCCChHHHHHHHHHHh
Q 041899 19 LRAVQEN---QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 19 l~~l~~~---~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...+..+ +..++.||+|+|||+.+-.+...
T Consensus 30 ~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 30 KNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3345554 35789999999999887665443
No 438
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.40 E-value=0.4 Score=53.27 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-.+..+
T Consensus 89 ~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999887655444
No 439
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.31 E-value=0.29 Score=46.68 Aligned_cols=54 Identities=24% Similarity=0.300 Sum_probs=35.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhccc---------CCCCeEEEecchHHHHHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGY---------TKHGKVGCTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~---------~~~~~ilv~~P~r~la~q~~~~v~~~~ 78 (650)
.++.+++.||+|+|||+.+.+++..... ..+.+++++..-.. ..++.+|+....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 6788999999999999888777665432 13458888855444 556667776544
No 440
>PRK13695 putative NTPase; Provisional
Probab=92.29 E-value=0.61 Score=43.76 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=17.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.++++|++|+||||++-.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998876543
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.28 E-value=0.11 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.++++||+||||||.+-.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999987776543
No 442
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.24 E-value=0.46 Score=49.14 Aligned_cols=52 Identities=13% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
+.+.+...+...++.++|||++| .++....-+++|.+-.-.++.-+|+.|..
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPAD--AMNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHHhhCcccCCceEEEecchh--hhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 34444456677889999999999 34444555666665444444555555544
No 443
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.23 E-value=0.2 Score=51.81 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=34.3
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHH
Q 041899 18 VLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVA 66 (650)
Q Consensus 18 ~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~l 66 (650)
+..++..+++++++|+|||||||++-..+.. .....+++.+--+.++
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall~~--Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALLDF--IPPEERIVTIEDTPEL 182 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHh--CCchhcEEEEeccccc
Confidence 4566789999999999999999888766544 2334577777555443
No 444
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.21 E-value=0.23 Score=55.37 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=28.4
Q ss_pred CchHHHHHHHHHHH------cCCeEEEEcCCCChHHHHHHHHHHhcc
Q 041899 10 PIYHYREQVLRAVQ------ENQVVVIVGETGSGKTTQIPQYLHEAG 50 (650)
Q Consensus 10 pl~~~q~~~l~~l~------~~~~vii~apTGsGKT~~ip~~l~~~~ 50 (650)
+..++..++++... ..+..+++||+|-||||++-.+....+
T Consensus 305 s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 305 SKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred ccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcC
Confidence 34444556666543 357899999999999998866655543
No 445
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.21 E-value=0.44 Score=55.09 Aligned_cols=79 Identities=16% Similarity=0.224 Sum_probs=67.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCC-CccccCcCCC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATN-IAETSLTIDG 294 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~-i~e~gidip~ 294 (650)
.+.+++|.+||+.-+.+.++.+++.+... ++.+..+||+++..++..+++...+|...|+|+|. .+...+.+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPL-----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhc-----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcc
Confidence 36789999999999999999998876432 47789999999999999999999999999999996 4555677888
Q ss_pred eEEEE
Q 041899 295 IKYVV 299 (650)
Q Consensus 295 v~~VI 299 (650)
+.+||
T Consensus 384 l~lvV 388 (681)
T PRK10917 384 LGLVI 388 (681)
T ss_pred cceEE
Confidence 88876
No 446
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.20 E-value=0.27 Score=51.37 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccC-----CCCeEEEecc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYT-----KHGKVGCTQP 62 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~P 62 (650)
..+..+.|.||+|||||++.-+++...... .+++++|+--
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdT 168 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDT 168 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEc
Confidence 456789999999999998887776544321 1347888644
No 447
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.18 E-value=0.59 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=17.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
..++++.||+|+|||+++-.+.
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 5689999999999997765443
No 448
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.18 E-value=0.41 Score=52.71 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=17.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
.+.+++.||+|+|||+++-.+.
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA 237 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVA 237 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHH
Confidence 4569999999999997654443
No 449
>PRK05580 primosome assembly protein PriA; Validated
Probab=92.13 E-value=0.26 Score=56.83 Aligned_cols=74 Identities=15% Similarity=0.174 Sum_probs=60.8
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeE
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIK 296 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~ 296 (650)
++++||.+|+++-+.++.+.+++.+ +..+..+||+++..+|.+.+.....|..+|+|+|..+- -+.++++.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f--------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~ 260 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF--------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLG 260 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCC
Confidence 6789999999999999999988754 35688899999999999888888889999999997433 25566777
Q ss_pred EEE
Q 041899 297 YVV 299 (650)
Q Consensus 297 ~VI 299 (650)
.||
T Consensus 261 liV 263 (679)
T PRK05580 261 LII 263 (679)
T ss_pred EEE
Confidence 655
No 450
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=92.09 E-value=0.17 Score=49.54 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=29.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..+..++|.|++|||||+...+++.+.. ..+.+++++
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~-~~g~~v~yi 53 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETA-GQGKKVAYI 53 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEE
Confidence 44578899999999999998888876653 335577776
No 451
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.07 E-value=0.6 Score=43.99 Aligned_cols=89 Identities=20% Similarity=0.197 Sum_probs=51.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc-cCcEeeeeecccccCCCCceEE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK-LGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~-~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
++-.+++||-.||||+-+.+....... .+.++++.-|...- |. +.. +....| . ...-+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~-~g~~v~vfkp~iD~------R~----~~~~V~Sr~G--------~-~~~A~~ 63 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE-AGMKVLVFKPAIDT------RY----GVGKVSSRIG--------L-SSEAVV 63 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH-cCCeEEEEeccccc------cc----ccceeeeccC--------C-ccccee
Confidence 456789999999999887777665533 35577777773211 11 110 001111 1 112233
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEeccccc
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHE 133 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~He 133 (650)
+-.+.-+...+........+++|.|||++-
T Consensus 64 i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF 93 (201)
T COG1435 64 IPSDTDIFDEIAALHEKPPVDCVLIDEAQF 93 (201)
T ss_pred cCChHHHHHHHHhcccCCCcCEEEEehhHh
Confidence 445555556555544444489999999993
No 452
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.06 E-value=0.39 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+.+++.||+|+|||+++-.+..
T Consensus 211 ~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHH
Confidence 346799999999999987755443
No 453
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.05 E-value=1.5 Score=52.09 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=57.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYM 105 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~ 105 (650)
..+++.||||+|||+++-. +.+..+..+..++.+ ....... ...++...|.+.| .+||..
T Consensus 596 ~~~Lf~Gp~GvGKt~lA~~-La~~l~~~~~~~i~~-d~s~~~~--~~~~~~l~g~~~g-~~g~~~--------------- 655 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELAKA-LAEFLFDDEDAMVRI-DMSEYME--KHSVARLIGAPPG-YVGYEE--------------- 655 (852)
T ss_pred eEEEEEcCCCCCHHHHHHH-HHHHhcCCCCcEEEE-echhhcc--cchHHHhcCCCCC-ccCccc---------------
Confidence 3689999999999966643 333333333333332 2111111 1112233443332 233211
Q ss_pred ChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC--------CCc--eEEEEccCCChHHHHhh
Q 041899 106 TDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR--------SDL--KLLISSATLDAEKFSAY 172 (650)
Q Consensus 106 T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~--------~~~--kii~~SAT~~~~~~~~~ 172 (650)
.|.|...+...| +++|++||++. ...+....++..+..-+ -+. -+|+||.....+.+.+.
T Consensus 656 -~g~l~~~v~~~p----~~vlllDeiek--a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~ 725 (852)
T TIGR03346 656 -GGQLTEAVRRKP----YSVVLFDEVEK--AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQEL 725 (852)
T ss_pred -ccHHHHHHHcCC----CcEEEEecccc--CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhh
Confidence 234444444433 57999999993 33333333333321110 112 35667777765555543
No 454
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.05 E-value=0.37 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=21.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||.||||||++-.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999998886654
No 455
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.04 E-value=0.88 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..++++.||+|+|||+++-.+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 46899999999999987655443
No 456
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.01 E-value=0.23 Score=51.91 Aligned_cols=52 Identities=13% Similarity=0.200 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 109 MVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 109 ~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
-+.+.+...|...++.++|||++| .++....-+++|.+-.-.++.-+|+.|.
T Consensus 95 ~l~~~~~~~~~~g~~kV~iI~~ae--~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 95 EVTEKLYEHARLGGAKVVWLPDAA--LLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred HHHHHHhhccccCCceEEEEcchH--hhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 445566667778899999999999 4444455566666544333344444443
No 457
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=92.00 E-value=1.1 Score=45.20 Aligned_cols=134 Identities=13% Similarity=0.191 Sum_probs=78.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHH----HHHHHhCCccCcEeeeeecccccCCCC
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAA----RVSREMGVKLGHEVGYSIRFEDCTSEK 99 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~----~v~~~~~~~~g~~vg~~~~~~~~~~~~ 99 (650)
++---.|.|.-|-|||+.+--.+.+..+..+.+.+++=-.+.-+..++. .+++++.-. -+.+......-+.
T Consensus 16 ~~~~~~viG~RgiGKtya~k~~~i~df~~~G~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~-----~F~vk~~k~~idg 90 (333)
T PF05894_consen 16 DRILNFVIGARGIGKTYALKKKLIKDFIEYGEQFIYLRRYKTELDKMKNKFFNDVQQEFPNN-----EFEVKGNKIYIDG 90 (333)
T ss_pred cceEEEEEecccccchhHHHHHHHHHHHhcCCEEEEEEecchHHHHHhhHHHHHHHHhCCCC-----cEEEEccEEEECC
Confidence 3444466799999999998888877777777788887554444433333 333333110 0111111111112
Q ss_pred ceEEEEChHHHHHHHhcCCCCCCCceEEecccc-cCCcc------ccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 100 TVLKYMTDGMVLREMLSDPKLESYSVLMVDEAH-ERTLS------TDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 100 ~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~H-er~~~------~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
..+-+.++=.-+.. .......++.+||+||+- |++.. .+.++.++..+.+.+.+++++++|--
T Consensus 91 k~~g~~~~Ls~~q~-~Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~Na 160 (333)
T PF05894_consen 91 KLIGYFIPLSGWQK-LKSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSNA 160 (333)
T ss_pred eEEEEEEecchhhh-cccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEecc
Confidence 22222222111111 233467889999999998 54431 24566777777778899999999864
No 458
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=92.00 E-value=2.2 Score=43.38 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=77.7
Q ss_pred HHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcc---------cCCCCeEEEec--chHHHHHHHHHHHHHHhCCcc
Q 041899 15 REQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAG---------YTKHGKVGCTQ--PRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 15 q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~---------~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~ 82 (650)
+.++++. ..++-.++|.|+.|.||||++........ ..+.|+++|+. -.|.-+..-.+.+...+|...
T Consensus 78 ~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 78 SPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred ChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 4555655 45666778889999999987765543321 12345777753 345545555556667777765
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccC----CccccHHHHHHHHHHh--cCCCce
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHER----TLSTDILLGIFKDLVR--LRSDLK 156 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her----~~~~d~ll~~l~~~~~--~~~~~k 156 (650)
+..--... .+.......--+..+ .|.++...+..-.+.+++|||=.=.. +...+-.-.+++...+ ...++-
T Consensus 158 advrn~dl--td~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~ca 234 (402)
T COG3598 158 ADVRNMDL--TDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECA 234 (402)
T ss_pred Hhhhheec--cccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCe
Confidence 43211111 000000001112334 56666655555567899999977611 1111233333443333 224567
Q ss_pred EEEEccCC
Q 041899 157 LLISSATL 164 (650)
Q Consensus 157 ii~~SAT~ 164 (650)
||.++-|.
T Consensus 235 Iiy~hHts 242 (402)
T COG3598 235 IIYIHHTS 242 (402)
T ss_pred EEEEeccc
Confidence 77777764
No 459
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.96 E-value=0.16 Score=49.77 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=27.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+.+..-+|++|+|||||||.+..++-.......+.|+-+.
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIE 163 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIE 163 (375)
T ss_pred cccCceEEEECCCCCCchhhHHHHhcccccCCCCceEEec
Confidence 4567789999999999998777666544333334555543
No 460
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.94 E-value=0.21 Score=54.57 Aligned_cols=94 Identities=26% Similarity=0.412 Sum_probs=0.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEEECh
Q 041899 28 VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTD 107 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T~ 107 (650)
++++||+||||| .+|+.++.++|.+. +.+..+
T Consensus 226 vLlHGPPGCGKT-----------------------------~lA~AiAgel~vPf-------------------~~isAp 257 (802)
T KOG0733|consen 226 VLLHGPPGCGKT-----------------------------SLANAIAGELGVPF-------------------LSISAP 257 (802)
T ss_pred eeeeCCCCccHH-----------------------------HHHHHHhhhcCCce-------------------Eeecch
Q ss_pred HHH----------HHHHhcCCCCCCCceEEecccc-------------cCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 108 GMV----------LREMLSDPKLESYSVLMVDEAH-------------ERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 108 ~~L----------l~~l~~~~~l~~~~~iIiDE~H-------------er~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
+++ +|.+.....-..-.+++|||++ ||-+-..++-.+=........+-.+++..||-
T Consensus 258 eivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 258 EIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred hhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Q ss_pred ChHHH
Q 041899 165 DAEKF 169 (650)
Q Consensus 165 ~~~~~ 169 (650)
.++.+
T Consensus 338 RPDsl 342 (802)
T KOG0733|consen 338 RPDSL 342 (802)
T ss_pred CCccc
No 461
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.94 E-value=0.34 Score=49.71 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.+.||.||||||.+-.++
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~ 52 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILA 52 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHh
Confidence 3578899999999999999886654
No 462
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.93 E-value=0.17 Score=51.37 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=38.8
Q ss_pred HHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 18 VLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 18 ~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
++..+..+..++|.|+||+|||+.+-+++.......+.+++++.- -....++..++..
T Consensus 23 ~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~-E~~~~~~~~r~~~ 80 (271)
T cd01122 23 LTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL-EEPVVRTARRLLG 80 (271)
T ss_pred eeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc-ccCHHHHHHHHHH
Confidence 334567889999999999999998888876653332557777642 2234555555533
No 463
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.87 E-value=0.17 Score=49.09 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+..++.+.|.||+|||||+..-+++.+.. ..+.+++++.-
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~-~~g~~v~yi~~ 48 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAA-RQGKKVVYIDT 48 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEEC
Confidence 34578899999999999988877766543 23456666544
No 464
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=91.85 E-value=0.35 Score=47.20 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=43.3
Q ss_pred eEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc-CCCceEEEEccCCChHHHHhhhC
Q 041899 101 VLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL-RSDLKLLISSATLDAEKFSAYFN 174 (650)
Q Consensus 101 ~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~-~~~~kii~~SAT~~~~~~~~~~~ 174 (650)
.+.--+.||..|...+-..-.+.+++|+||+= ---+..|......++... ..+.-+|+ ++-+.+.+.+|.+
T Consensus 144 PvktYSSGM~aRLaFsia~~~~pdILllDEvl-avGD~~F~~K~~~rl~e~~~~~~tiv~--VSHd~~~I~~~Cd 215 (249)
T COG1134 144 PVKTYSSGMYARLAFSVATHVEPDILLLDEVL-AVGDAAFQEKCLERLNELVEKNKTIVL--VSHDLGAIKQYCD 215 (249)
T ss_pred chhhccHHHHHHHHHhhhhhcCCCEEEEehhh-hcCCHHHHHHHHHHHHHHHHcCCEEEE--EECCHHHHHHhcC
Confidence 34445668888877665555667999999997 223344555555555554 44433444 4445667777654
No 465
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.85 E-value=0.53 Score=49.69 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKY 104 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~ 104 (650)
.+-+-+.||.|+|||.+.-.+........+.++ +--.-..++.+++.+..+.. + .
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~~~~-----------------~-~--- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV----HFHEFMLDVHSRLHQLRGQD-----------------D-P--- 116 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccc----cccHHHHHHHHHHHHHhCCC-----------------c-c---
Confidence 456899999999999888777554433222233 33345566666665533110 0 0
Q ss_pred EChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHH-HHHHHHhcCCCceEEEEccCCChHHHH
Q 041899 105 MTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLG-IFKDLVRLRSDLKLLISSATLDAEKFS 170 (650)
Q Consensus 105 ~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~-~l~~~~~~~~~~kii~~SAT~~~~~~~ 170 (650)
-..+.+. ..++..+|.+||+|-.++....++. ++..+ ...++-+|..|-+.+.+.+.
T Consensus 117 --l~~va~~-----l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 117 --LPQVADE-----LAKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred --HHHHHHH-----HHhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCCEEEecCCCChHHHcC
Confidence 0111222 2456779999999954444444443 33333 23567788888887555433
No 466
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.83 E-value=0.22 Score=44.38 Aligned_cols=49 Identities=24% Similarity=0.354 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAI 68 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 68 (650)
+.+.+.+..+..+++.|+.|+||||.+-.++...+.. --+..||=.+++
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~----~~v~SPTf~lv~ 61 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ----GNVTSPTFTLVN 61 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC----CcccCCCeeeee
Confidence 3445556678899999999999999886666554322 236677755443
No 467
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=91.81 E-value=0.17 Score=52.31 Aligned_cols=25 Identities=28% Similarity=0.622 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+.++..+++.||+||||||.+-.+.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4678899999999999999886553
No 468
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.81 E-value=0.24 Score=46.30 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=33.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~ 77 (650)
.++|.|++|||||++...+..+. +.+++++......-.+..+|+..-
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~----~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS----GLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc----CCCcEeCcCCCCChHHHHHHHHHH
Confidence 58999999999999988776553 234666665555555666677553
No 469
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.79 E-value=0.12 Score=50.01 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||.||||||++-...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhc
Confidence 4578899999999999999886654
No 470
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.79 E-value=0.48 Score=55.36 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+.+++.||+|||||+++-.+..+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~ 511 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES 511 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999997776555443
No 471
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=91.77 E-value=0.63 Score=44.03 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=25.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..++.+.|.||.||||||++-...-.. ....|.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~ 59 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITL 59 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEE
Confidence 3578899999999999999886554322 223445544
No 472
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.72 Score=49.99 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=24.9
Q ss_pred HHHHH----HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 17 QVLRA----VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 17 ~~l~~----l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++. +..|+.+-|.|+|||||||.+-+..-
T Consensus 352 ~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred chhhccceeecCCCeEEEECCCCCCHHHHHHHHHh
Confidence 45554 46899999999999999999876654
No 473
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.65 E-value=1.1 Score=44.58 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcc-----------cCCCCeEEEec
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAG-----------YTKHGKVGCTQ 61 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~-----------~~~~~~ilv~~ 61 (650)
+...++.||.|+|||+++.++.+... ..++++|+|+.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 35689999999999988877765421 12355888876
No 474
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.62 E-value=0.24 Score=60.44 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=45.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCC----CeEEEecchHHHHHHHHHHHHHHhC
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKH----GKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
..+++++|.|..|||||+.+..-+++.....+ ..|+|+..|++++.++..|+.+.+.
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 45779999999999999776666555444432 2899999999999999999987553
No 475
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.62 E-value=0.5 Score=54.79 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=16.1
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~ 45 (650)
.+++.||||+|||+++-.+
T Consensus 490 ~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999777544
No 476
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.51 E-value=0.25 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~ 45 (650)
.++.++|.||.|+||||.+-..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i 49 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQI 49 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999876544
No 477
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.50 E-value=0.59 Score=55.28 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=15.4
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~ 45 (650)
.+++.||||+|||+++-.+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~L 559 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKAL 559 (821)
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999766443
No 478
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.50 E-value=0.31 Score=54.04 Aligned_cols=74 Identities=16% Similarity=0.190 Sum_probs=60.2
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeE
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIK 296 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~ 296 (650)
++++||.+|+..-+.+.++.|++.+ +..+..+||+++..+|.+++....+|..+|||+|..+- -..++++.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f--------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~ 95 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF--------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLG 95 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCC
Confidence 6789999999999999999988764 34577889999999999988888889999999996533 24566777
Q ss_pred EEE
Q 041899 297 YVV 299 (650)
Q Consensus 297 ~VI 299 (650)
.||
T Consensus 96 lII 98 (505)
T TIGR00595 96 LII 98 (505)
T ss_pred EEE
Confidence 665
No 479
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.49 E-value=0.23 Score=54.28 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
+.......|.-.++.+.||||+| ++.....-+++|.+-.-.+. +++.=||-+
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~h--V~FIlATTe 158 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSH--VKFILATTE 158 (515)
T ss_pred HHHHhccCCccccceEEEEecHH--hhhHHHHHHHhcccccCccC--eEEEEecCC
Confidence 44555566788999999999999 77777777788876544444 444445543
No 480
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=0.54 Score=46.96 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=23.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAA 67 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 67 (650)
-+++-||+|+|||+++-...-+. + ...+.+..-.|+
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA----n-STFFSvSSSDLv 203 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA----N-STFFSVSSSDLV 203 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc----C-CceEEeehHHHH
Confidence 48999999999998776555444 1 345555544443
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.44 E-value=0.21 Score=50.31 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=40.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+..+.+++|.|++|||||+...+++.+.... +.+++++ -+.+...++.+.+.+ +|...
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyv-s~~e~~~~l~~~~~~-~g~d~ 77 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYV-STEESPEELLENARS-FGWDL 77 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEE-EecCCHHHHHHHHHH-cCCCH
Confidence 5678999999999999999999999876433 4466665 344455566555543 66543
No 482
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.36 E-value=0.13 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.+.||+||||||++...+
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456789999999999999887754
No 483
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.35 E-value=0.47 Score=54.63 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+..+..+.|.||+|||||++..+++.... ..+++++++-.--.+... .++.+|.+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~-~~G~~v~yId~E~t~~~~----~A~~lGvDl 112 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDPD----YAKKLGVDT 112 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchhHH----HHHHcCCCh
Confidence 33478899999999999998888777543 346688888766555533 334455543
No 484
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.32 E-value=0.32 Score=48.58 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=21.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||.||||||++-.+.
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4568899999999999999887654
No 485
>PRK08760 replicative DNA helicase; Provisional
Probab=91.30 E-value=0.79 Score=50.42 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=37.4
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 19 LRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 19 l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+..+..++.++|.|.||.|||+.+..+........+..+++... ..-..|+..|+..
T Consensus 223 t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl-EMs~~ql~~Rl~a 279 (476)
T PRK08760 223 TAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM-EMSASQLAMRLIS 279 (476)
T ss_pred hcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec-cCCHHHHHHHHHH
Confidence 33455678899999999999988877766543333445666533 3334566666643
No 486
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.28 E-value=0.18 Score=47.55 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
++.++|.||+||||||++-.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 46789999999999998766553
No 487
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.22 E-value=0.18 Score=54.46 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=33.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAI 68 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~ 68 (650)
..++++|.|+||||||+.++.++... ...+.+++++=|..+...
T Consensus 41 ~~~h~~i~g~tGsGKt~~i~~l~~~~-~~~~~~~vi~D~kg~~~~ 84 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRELLASI-RARGDRAIIYDPNGGFVS 84 (410)
T ss_pred hhccEEEEcCCCCCHHHHHHHHHHHH-HhcCCCEEEEeCCcchhH
Confidence 45789999999999999887766543 334668999999877543
No 488
>PRK04328 hypothetical protein; Provisional
Probab=91.22 E-value=0.26 Score=49.34 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=36.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+..+..++|.||+|+|||++..+++.+. ..++.+++|+. +.+-..++.+++ +.+|.+
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~-~~~ge~~lyis-~ee~~~~i~~~~-~~~g~d 76 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNG-LQMGEPGVYVA-LEEHPVQVRRNM-RQFGWD 76 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHH-HhcCCcEEEEE-eeCCHHHHHHHH-HHcCCC
Confidence 3467889999999999999999988875 33455666653 222333444333 345543
No 489
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.21 E-value=0.73 Score=42.40 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRV 65 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 65 (650)
-+.|-.++|.|||+.+.-..+.. ...+.+++++|=.+.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra-~~~g~~v~~vQFlKg 41 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRA-LGHGYRVGVVQFLKG 41 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEEeCC
Confidence 46777788999998776665554 344668888665444
No 490
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.18 E-value=0.71 Score=50.15 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 17 QVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 17 ~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+++..+..++.++|.|+||+|||+.+..++.......+..++++. .-.-..++..|+..
T Consensus 186 ~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-lEm~~~~l~~Rl~~ 244 (421)
T TIGR03600 186 RLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-LEMSAEQLGERLLA 244 (421)
T ss_pred HHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHH
Confidence 334445678899999999999998887776554434455676664 33345666666543
No 491
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=91.18 E-value=14 Score=46.37 Aligned_cols=221 Identities=13% Similarity=0.178 Sum_probs=107.1
Q ss_pred chHHHHHHHHHHHcCC--eEEEEcCCC-ChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 11 IYHYREQVLRAVQENQ--VVVIVGETG-SGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~--~vii~apTG-sGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
+..-|.+++..+..++ .+++.+.-| +|||+.+-... ......+..|.++.|+...+.++.+. .+.. +.+
T Consensus 282 ~~~~q~~Av~~il~dr~~v~iv~~~GgAtGKtt~l~~l~-~~a~~~G~~V~~lApt~~a~~~L~e~----~gi~-a~T-- 353 (1623)
T PRK14712 282 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMAREQGREVQIIAADRRSQMNLKQD----ERLS-GEL-- 353 (1623)
T ss_pred cchhHHHHHHHHhcCCCceEEEEecccccccHHHHHHHH-HHHHhCCcEEEEEeCCHHHHHHHHhc----cCCC-chh--
Confidence 4456777777777655 556666555 99998887433 32234566999999999988776532 1211 000
Q ss_pred eeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCCh-
Q 041899 88 YSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDA- 166 (650)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~- 166 (650)
+.+...++. .+.+..=+++||||+. .+...-...+++.... .+.|+|++ =|-..
T Consensus 354 ----------------va~~~~~l~----~~~~~~~~ilIVDEA~--~Ls~rdm~~Ll~~A~~--~garVllg-D~~Q~~ 408 (1623)
T PRK14712 354 ----------------ITGRRQLLE----GMAFTPGSTVIVDQGE--KLSLKETLTLLDGAAR--HNVQVLIT-DSGQRT 408 (1623)
T ss_pred ----------------hhhhhhhhc----ccCCCCCcEEEEECCC--cCCHHHHHHHHHHHHh--cCCEEEEE-echhhh
Confidence 011111111 1222334899999998 4444445555554433 45676654 33211
Q ss_pred ---HHHHhhh-CCCCccccCCcc-cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH
Q 041899 167 ---EKFSAYF-NFAPILRVPGRR-YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI 241 (650)
Q Consensus 167 ---~~~~~~~-~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~ 241 (650)
+.|.-+- .+.......+.. -+.++.- .+..+-....+..-...........++|+.+++ +-..+-..+++.+
T Consensus 409 aAG~af~~Lq~aG~~t~~~~~~~~~~a~iir--q~d~~ar~~ala~~y~~~~~~~~~~~~vv~~~r-er~~lN~~IR~~L 485 (1623)
T PRK14712 409 GTGSALMAMKDAGVNTYRWQGGEQRPATIIS--EPDRNVRYARLAGDFAASVKAGEESVAQVSGVR-EQAILTQAIRSEL 485 (1623)
T ss_pred hcccHHHHHHHcCCcEEEEccccccccceee--cCCHHHHHHHHHHHHHhhcccCCceEEEEcCcc-HHHHHHHHHHHHH
Confidence 1111111 111111111111 1112211 111111111111000111122346788888887 5588888888887
Q ss_pred HhhcCC-CCceEEEee-cCCCCHHHHhh
Q 041899 242 RKLGTK-IGELIVCPV-YANLPTELQAK 267 (650)
Q Consensus 242 ~~~~~~-~~~~~v~~l-h~~l~~~~r~~ 267 (650)
...|.- .++..+..+ -..|+.++|..
T Consensus 486 k~~G~L~~~~~~i~tL~pv~lT~a~r~~ 513 (1623)
T PRK14712 486 KTQGVLGHPEVTMTALSPVWLDSRSRYL 513 (1623)
T ss_pred HHcCCcCCCceEEEEeccCCCCHHHhhh
Confidence 654431 124444444 23567665544
No 492
>PHA02244 ATPase-like protein
Probab=91.07 E-value=0.31 Score=50.92 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 14 YREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 14 ~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....+...+..+..+++.||||+|||+++-.+...
T Consensus 108 ~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 108 ETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 44556666788999999999999999888666544
No 493
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.05 E-value=1.3 Score=43.61 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=29.1
Q ss_pred ceEEeccccc----------CCccccHHHHHHHHHHhcCCCceEEEEccCCChHHH
Q 041899 124 SVLMVDEAHE----------RTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKF 169 (650)
Q Consensus 124 ~~iIiDE~He----------r~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~ 169 (650)
.+|.|||.+- |+--++..-+++..+-....+--++-.-||-+++.+
T Consensus 212 civFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 212 CIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred eEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 5678899881 344445555566655555555667888888766543
No 494
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=90.93 E-value=0.52 Score=46.95 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
+.+++.||+|-||||++-...
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 579999999999998765443
No 495
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.90 E-value=0.15 Score=44.85 Aligned_cols=18 Identities=44% Similarity=0.534 Sum_probs=15.1
Q ss_pred EEEEcCCCChHHHHHHHH
Q 041899 28 VVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~ 45 (650)
++|.|++||||||++-.+
T Consensus 1 I~i~G~~GsGKtTia~~L 18 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKEL 18 (129)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHH
Confidence 589999999999887544
No 496
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.88 E-value=0.24 Score=54.72 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=38.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
+..+..++|.||+|||||++..+++.+.....+.+++++.- .+-..++.+.. +.+|..
T Consensus 18 lp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~-~~~G~~ 75 (484)
T TIGR02655 18 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNA-RSFGWD 75 (484)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHH-HHcCCC
Confidence 44678999999999999999999988753332445666542 24444555443 345543
No 497
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.84 E-value=0.21 Score=44.81 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=18.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+++.||+|+|||+++-.+....
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999998876665443
No 498
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=0.14 Score=51.58 Aligned_cols=19 Identities=37% Similarity=0.628 Sum_probs=15.3
Q ss_pred cCCeEEEEcCCCChHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQI 42 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~i 42 (650)
+..|+++.||||||||.++
T Consensus 96 ~KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eeccEEEECCCCCcHHHHH
Confidence 3457999999999999544
No 499
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.78 E-value=0.26 Score=48.53 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=35.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
+..+..++|.||+|+|||+++-+++.+. ..++..++++.- .....++.++ ++.+|.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~~g~~~~~is~-e~~~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKG-LRDGDPVIYVTT-EESRESIIRQ-AAQFGM 72 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEEc-cCCHHHHHHH-HHHhCC
Confidence 4568899999999999998888777654 234456666543 2233444434 333443
No 500
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=90.73 E-value=0.11 Score=52.78 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=25.4
Q ss_pred HHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 17 QVLRAVQENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 17 ~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+++...+.+.-+++.|||||||||.+.-|-++.
T Consensus 265 k~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL 297 (514)
T KOG2373|consen 265 KYLKGHRPGELTVLTGPTGSGKTTFLSEYSLDL 297 (514)
T ss_pred HHhccCCCCceEEEecCCCCCceeEehHhhHHH
Confidence 334444567889999999999998888777664
Done!