Query 041899
Match_columns 650
No_of_seqs 546 out of 2863
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 20:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 8E-109 3E-113 947.5 62.5 629 2-633 86-732 (773)
2 2va8_A SSO2462, SKI2-type heli 100.0 3.6E-57 1.2E-61 521.9 33.0 510 9-531 29-624 (715)
3 2p6r_A Afuhel308 helicase; pro 100.0 2.5E-56 8.4E-61 513.4 33.6 499 10-528 25-600 (702)
4 3i4u_A ATP-dependent RNA helic 100.0 4.4E-55 1.5E-59 437.0 25.9 250 384-635 5-255 (270)
5 2zj8_A DNA helicase, putative 100.0 4.4E-54 1.5E-58 496.0 27.1 533 6-560 19-644 (720)
6 4f92_B U5 small nuclear ribonu 100.0 4.2E-41 1.4E-45 411.7 38.2 454 11-473 80-637 (1724)
7 4f92_B U5 small nuclear ribonu 100.0 1.4E-41 4.8E-46 415.9 32.3 451 11-471 927-1466(1724)
8 3l9o_A ATP-dependent RNA helic 100.0 4.6E-40 1.6E-44 389.8 24.6 328 6-351 180-598 (1108)
9 3eiq_A Eukaryotic initiation f 100.0 1.6E-40 5.4E-45 358.4 16.8 316 5-352 57-389 (414)
10 3o8b_A HCV NS3 protease/helica 100.0 3.1E-40 1.1E-44 366.4 15.3 302 3-352 210-516 (666)
11 3pey_A ATP-dependent RNA helic 100.0 2.1E-38 7E-43 339.3 28.5 320 7-351 24-357 (395)
12 3fht_A ATP-dependent RNA helic 100.0 1.7E-38 5.8E-43 342.2 28.0 321 7-351 44-380 (412)
13 4a4z_A Antiviral helicase SKI2 100.0 4.8E-40 1.6E-44 386.4 14.3 374 8-398 37-549 (997)
14 1s2m_A Putative ATP-dependent 100.0 1.2E-37 4.1E-42 334.5 30.0 309 10-352 43-367 (400)
15 2db3_A ATP-dependent RNA helic 100.0 1E-37 3.5E-42 338.3 29.3 308 9-350 77-407 (434)
16 2z83_A Helicase/nucleoside tri 100.0 5.5E-39 1.9E-43 349.9 19.1 294 19-350 15-313 (459)
17 1hv8_A Putative ATP-dependent 100.0 7.3E-38 2.5E-42 331.6 26.0 311 7-352 25-347 (367)
18 2jlq_A Serine protease subunit 100.0 4.3E-39 1.5E-43 350.1 14.1 293 18-349 11-310 (451)
19 2xgj_A ATP-dependent RNA helic 100.0 7.7E-38 2.6E-42 367.6 25.7 325 8-350 84-499 (1010)
20 2j0s_A ATP-dependent RNA helic 100.0 2E-37 6.9E-42 333.9 26.6 311 10-352 59-385 (410)
21 2v1x_A ATP-dependent DNA helic 100.0 4.9E-38 1.7E-42 351.1 22.2 307 10-352 44-376 (591)
22 1xti_A Probable ATP-dependent 100.0 5.9E-37 2E-41 327.9 29.2 311 10-351 30-358 (391)
23 2i4i_A ATP-dependent RNA helic 100.0 1.7E-37 5.8E-42 335.1 24.8 312 7-352 34-385 (417)
24 3fmp_B ATP-dependent RNA helic 100.0 3.9E-38 1.3E-42 346.5 18.6 320 8-351 112-447 (479)
25 2whx_A Serine protease/ntpase/ 100.0 3.6E-38 1.2E-42 353.3 17.2 304 5-349 169-477 (618)
26 2z0m_A 337AA long hypothetical 100.0 1.2E-36 4.1E-41 318.5 24.4 300 6-348 12-321 (337)
27 1fuu_A Yeast initiation factor 100.0 1.2E-37 4.2E-42 333.5 15.2 313 8-352 41-368 (394)
28 1oyw_A RECQ helicase, ATP-depe 100.0 6.6E-37 2.2E-41 338.5 19.4 304 10-352 25-345 (523)
29 1yks_A Genome polyprotein [con 100.0 1.6E-36 5.6E-41 328.4 20.4 290 21-348 4-297 (440)
30 3fho_A ATP-dependent RNA helic 100.0 1.5E-37 5.2E-42 343.5 12.1 317 10-350 141-470 (508)
31 3i5x_A ATP-dependent RNA helic 100.0 2.4E-36 8.2E-41 339.1 21.9 319 9-352 93-451 (563)
32 2v6i_A RNA helicase; membrane, 100.0 2.5E-36 8.7E-41 326.2 20.1 286 24-348 1-288 (431)
33 2ykg_A Probable ATP-dependent 100.0 2.2E-36 7.4E-41 348.1 20.7 320 7-352 10-518 (696)
34 3sqw_A ATP-dependent RNA helic 100.0 8.1E-36 2.8E-40 335.4 22.2 318 10-352 43-400 (579)
35 3rc3_A ATP-dependent RNA helic 100.0 5.4E-36 1.8E-40 336.5 18.3 364 23-440 153-532 (677)
36 3oiy_A Reverse gyrase helicase 100.0 9.5E-36 3.3E-40 321.3 18.1 299 5-349 16-364 (414)
37 1wp9_A ATP-dependent RNA helic 100.0 2.1E-35 7.1E-40 324.3 19.6 319 7-354 6-479 (494)
38 2wv9_A Flavivirin protease NS2 100.0 3.3E-35 1.1E-39 331.2 19.6 287 24-348 240-531 (673)
39 4a2p_A RIG-I, retinoic acid in 100.0 4.1E-35 1.4E-39 328.5 20.0 327 7-353 4-511 (556)
40 3tbk_A RIG-I helicase domain; 100.0 1.9E-34 6.5E-39 322.8 24.5 324 8-352 2-509 (555)
41 4gl2_A Interferon-induced heli 100.0 6.6E-35 2.2E-39 335.9 13.4 321 6-348 3-517 (699)
42 4a2q_A RIG-I, retinoic acid in 100.0 3.3E-33 1.1E-37 325.1 26.3 325 8-352 246-751 (797)
43 4a2w_A RIG-I, retinoic acid in 100.0 4.3E-32 1.5E-36 319.2 24.8 325 8-353 246-752 (936)
44 2eyq_A TRCF, transcription-rep 100.0 1.3E-31 4.6E-36 319.3 26.3 300 9-350 602-922 (1151)
45 1gm5_A RECG; helicase, replica 100.0 4.1E-33 1.4E-37 317.8 10.3 301 8-348 366-695 (780)
46 4ddu_A Reverse gyrase; topoiso 100.0 1.3E-31 4.5E-36 317.4 16.9 342 7-376 75-525 (1104)
47 2fwr_A DNA repair protein RAD2 100.0 1.3E-31 4.5E-36 293.9 15.2 295 8-354 91-458 (472)
48 2oca_A DAR protein, ATP-depend 100.0 1.5E-31 5.1E-36 296.4 11.9 302 9-348 112-453 (510)
49 1gku_B Reverse gyrase, TOP-RG; 100.0 9.1E-31 3.1E-35 310.4 16.9 267 8-304 55-352 (1054)
50 3h1t_A Type I site-specific re 100.0 7.1E-29 2.4E-33 279.7 20.2 301 9-340 177-545 (590)
51 3llm_A ATP-dependent RNA helic 100.0 2.1E-28 7.3E-33 242.6 17.2 178 2-181 53-235 (235)
52 1tf5_A Preprotein translocase 100.0 1.2E-27 4.1E-32 267.6 22.8 302 8-351 81-546 (844)
53 2fsf_A Preprotein translocase 99.9 2.9E-26 9.9E-31 255.7 20.3 107 216-351 440-584 (853)
54 1nkt_A Preprotein translocase 99.9 9.8E-26 3.4E-30 251.7 22.1 306 8-351 109-618 (922)
55 3dmq_A RNA polymerase-associat 99.9 8.1E-26 2.8E-30 266.2 16.6 313 9-350 152-615 (968)
56 3eaq_A Heat resistant RNA depe 99.9 2.9E-25 9.9E-30 216.1 9.6 172 207-405 21-211 (212)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.2E-23 4.1E-28 245.9 22.4 305 9-341 270-695 (1038)
58 1z63_A Helicase of the SNF2/RA 99.9 1E-23 3.5E-28 232.8 18.7 308 10-353 37-456 (500)
59 3i32_A Heat resistant RNA depe 99.9 8.9E-25 3.1E-29 222.7 7.7 191 188-410 3-213 (300)
60 1z3i_X Similar to RAD54-like; 99.9 1.5E-20 5.1E-25 212.8 28.7 309 10-353 55-531 (644)
61 3jux_A Protein translocase sub 99.9 3E-21 1E-25 211.1 19.8 162 156-351 411-588 (822)
62 1c4o_A DNA nucleotide excision 99.9 1.3E-20 4.3E-25 213.3 24.9 170 154-351 380-551 (664)
63 3mwy_W Chromo domain-containin 99.9 5E-21 1.7E-25 222.2 19.1 312 9-354 235-688 (800)
64 2d7d_A Uvrabc system protein B 99.8 2.4E-19 8.1E-24 202.8 24.7 170 154-351 386-557 (661)
65 1qde_A EIF4A, translation init 99.8 2.6E-19 9E-24 175.6 18.7 176 7-184 33-219 (224)
66 3ber_A Probable ATP-dependent 99.8 1.2E-19 4E-24 181.2 14.4 166 6-173 61-238 (249)
67 3iuy_A Probable ATP-dependent 99.8 2.8E-19 9.6E-24 176.0 16.9 156 8-166 40-210 (228)
68 2pl3_A Probable ATP-dependent 99.8 3.3E-19 1.1E-23 176.5 16.9 166 6-173 43-223 (236)
69 1vec_A ATP-dependent RNA helic 99.8 7.5E-19 2.5E-23 170.0 18.5 157 9-166 24-189 (206)
70 1q0u_A Bstdead; DEAD protein, 99.8 4.1E-19 1.4E-23 173.7 16.5 160 6-166 22-193 (219)
71 3bor_A Human initiation factor 99.8 5.9E-19 2E-23 174.8 17.1 155 10-166 52-216 (237)
72 3dkp_A Probable ATP-dependent 99.8 1.1E-18 3.8E-23 173.7 18.9 165 8-173 49-231 (245)
73 3ly5_A ATP-dependent RNA helic 99.8 2.3E-19 7.8E-24 180.5 13.9 160 11-172 77-252 (262)
74 2hjv_A ATP-dependent RNA helic 99.8 1.6E-19 5.5E-24 167.9 11.7 135 187-352 9-144 (163)
75 2gxq_A Heat resistant RNA depe 99.8 7.2E-19 2.5E-23 170.2 16.3 170 7-177 20-200 (207)
76 2rb4_A ATP-dependent RNA helic 99.8 2E-19 7E-24 169.3 11.4 142 187-352 7-149 (175)
77 3fmo_B ATP-dependent RNA helic 99.8 1.3E-18 4.4E-23 178.4 18.2 169 8-177 112-292 (300)
78 2oxc_A Probable ATP-dependent 99.8 1.1E-18 3.8E-23 172.0 17.0 156 10-167 46-211 (230)
79 3fe2_A Probable ATP-dependent 99.8 5.1E-19 1.7E-23 175.8 13.3 162 10-173 51-228 (242)
80 1fuk_A Eukaryotic initiation f 99.8 1.8E-19 6.1E-24 168.0 8.7 135 188-352 4-139 (165)
81 1t6n_A Probable ATP-dependent 99.8 2.8E-18 9.5E-23 167.8 17.6 164 10-174 36-213 (220)
82 1t5i_A C_terminal domain of A 99.8 2.4E-19 8.2E-24 168.2 9.3 133 187-350 5-138 (172)
83 2jgn_A DBX, DDX3, ATP-dependen 99.8 6E-19 2.1E-23 167.5 9.4 135 187-352 19-155 (185)
84 1wrb_A DJVLGB; RNA helicase, D 99.8 6.4E-18 2.2E-22 169.1 15.8 162 9-173 44-230 (253)
85 2p6n_A ATP-dependent RNA helic 99.7 1.9E-18 6.4E-23 164.8 9.8 132 187-350 29-161 (191)
86 3b6e_A Interferon-induced heli 99.7 1.3E-17 4.6E-22 162.1 13.2 155 6-163 29-216 (216)
87 2yjt_D ATP-dependent RNA helic 99.6 3.3E-19 1.1E-23 167.0 0.0 116 210-352 23-139 (170)
88 2ipc_A Preprotein translocase 99.7 2.3E-15 8E-20 167.8 25.0 120 9-132 78-212 (997)
89 1rif_A DAR protein, DNA helica 99.7 1.4E-16 4.6E-21 162.1 11.3 147 9-164 112-262 (282)
90 2vl7_A XPD; helicase, unknown 99.6 2E-15 6.9E-20 167.2 15.5 126 204-346 372-518 (540)
91 2fz4_A DNA repair protein RAD2 99.6 6.4E-15 2.2E-19 145.4 12.8 139 7-165 90-229 (237)
92 3crv_A XPD/RAD3 related DNA he 99.5 4.1E-12 1.4E-16 141.2 26.3 314 9-346 2-528 (551)
93 1z5z_A Helicase of the SNF2/RA 99.3 8.1E-13 2.8E-17 132.7 6.1 112 216-353 111-227 (271)
94 4a15_A XPD helicase, ATP-depen 99.2 2.2E-10 7.6E-15 128.3 15.2 174 156-346 377-581 (620)
95 1w36_D RECD, exodeoxyribonucle 98.4 6.1E-07 2.1E-11 100.4 10.3 65 12-76 151-218 (608)
96 3e1s_A Exodeoxyribonuclease V, 98.2 4.4E-06 1.5E-10 92.5 10.2 65 9-74 188-252 (574)
97 3upu_A ATP-dependent DNA helic 98.1 9.3E-06 3.2E-10 87.8 10.9 64 11-74 26-94 (459)
98 4b3f_X DNA-binding protein smu 98.1 5.5E-06 1.9E-10 93.6 8.2 66 10-76 189-255 (646)
99 3lfu_A DNA helicase II; SF1 he 97.7 0.00069 2.4E-08 76.4 18.2 70 10-81 9-81 (647)
100 2b8t_A Thymidine kinase; deoxy 97.7 0.00019 6.7E-09 68.9 11.3 115 23-162 10-124 (223)
101 3ec2_A DNA replication protein 97.4 0.00027 9.4E-09 65.6 8.0 39 10-48 14-61 (180)
102 2o0j_A Terminase, DNA packagin 97.3 0.0048 1.6E-07 64.2 16.8 70 8-77 161-231 (385)
103 2gk6_A Regulator of nonsense t 97.3 0.00033 1.1E-08 78.5 8.6 67 10-76 180-246 (624)
104 2orw_A Thymidine kinase; TMTK, 97.3 0.00044 1.5E-08 64.6 7.9 40 24-64 2-41 (184)
105 3cpe_A Terminase, DNA packagin 97.3 0.0032 1.1E-07 70.0 16.2 72 8-79 161-233 (592)
106 1xx6_A Thymidine kinase; NESG, 97.2 0.00099 3.4E-08 62.4 9.0 40 24-64 7-46 (191)
107 2xzl_A ATP-dependent helicase 97.2 0.00043 1.5E-08 79.5 7.4 66 11-76 361-426 (802)
108 2wjy_A Regulator of nonsense t 97.2 0.00062 2.1E-08 78.1 8.5 67 10-76 356-422 (800)
109 3vkw_A Replicase large subunit 97.1 0.00081 2.8E-08 70.9 8.0 107 25-163 161-269 (446)
110 1a5t_A Delta prime, HOLB; zinc 97.0 0.0021 7.2E-08 66.0 9.8 38 11-48 3-47 (334)
111 2j9r_A Thymidine kinase; TK1, 97.0 0.0015 5E-08 61.9 7.4 41 24-65 27-67 (214)
112 3kl4_A SRP54, signal recogniti 96.9 0.0027 9.4E-08 67.1 10.2 121 26-164 98-223 (433)
113 2w58_A DNAI, primosome compone 96.9 0.0038 1.3E-07 58.8 9.6 34 26-60 55-88 (202)
114 3n70_A Transport activator; si 96.8 0.0033 1.1E-07 55.9 8.2 24 22-45 21-44 (145)
115 3te6_A Regulatory protein SIR3 96.7 0.0048 1.6E-07 62.5 9.8 123 24-165 44-174 (318)
116 2kjq_A DNAA-related protein; s 96.7 0.00086 2.9E-08 60.2 3.8 25 24-48 35-59 (149)
117 2zpa_A Uncharacterized protein 96.7 0.0023 7.7E-08 71.0 7.4 112 11-165 176-289 (671)
118 1njg_A DNA polymerase III subu 96.7 0.0093 3.2E-07 57.2 11.1 33 16-48 33-68 (250)
119 3dm5_A SRP54, signal recogniti 96.6 0.004 1.4E-07 65.8 8.7 121 26-164 101-224 (443)
120 2px0_A Flagellar biosynthesis 96.6 0.01 3.4E-07 59.7 10.7 127 24-173 104-233 (296)
121 2orv_A Thymidine kinase; TP4A 96.5 0.0047 1.6E-07 59.0 7.6 41 24-65 18-58 (234)
122 2chg_A Replication factor C sm 96.5 0.022 7.5E-07 53.8 12.2 33 15-47 26-60 (226)
123 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0036 1.2E-07 59.1 5.9 42 23-65 26-67 (219)
124 1fnn_A CDC6P, cell division co 96.3 0.0079 2.7E-07 62.7 8.7 22 27-48 46-67 (389)
125 1l8q_A Chromosomal replication 96.3 0.015 5E-07 59.3 10.3 35 26-61 38-72 (324)
126 1w4r_A Thymidine kinase; type 96.2 0.0057 1.9E-07 56.9 5.7 39 24-63 19-57 (195)
127 1jr3_A DNA polymerase III subu 96.0 0.023 7.8E-07 58.9 10.4 32 17-48 27-61 (373)
128 2bjv_A PSP operon transcriptio 96.0 0.021 7.3E-07 56.2 9.6 24 23-46 27-50 (265)
129 3bos_A Putative DNA replicatio 96.0 0.011 3.7E-07 57.0 7.3 25 24-48 51-75 (242)
130 2qgz_A Helicase loader, putati 96.0 0.0066 2.3E-07 61.5 5.6 36 25-60 152-187 (308)
131 3u4q_A ATP-dependent helicase/ 95.9 0.0073 2.5E-07 73.0 6.7 73 5-79 5-82 (1232)
132 3u61_B DNA polymerase accessor 95.9 0.027 9.2E-07 57.3 9.9 31 18-48 38-71 (324)
133 3syl_A Protein CBBX; photosynt 95.9 0.05 1.7E-06 54.7 11.8 20 26-45 68-87 (309)
134 1uaa_A REP helicase, protein ( 95.9 0.0077 2.6E-07 68.1 6.2 69 10-80 2-73 (673)
135 2v1u_A Cell division control p 95.9 0.012 4E-07 61.3 7.2 25 24-48 43-67 (387)
136 2gno_A DNA polymerase III, gam 95.8 0.044 1.5E-06 55.2 10.7 50 110-161 70-119 (305)
137 1iqp_A RFCS; clamp loader, ext 95.7 0.042 1.4E-06 55.6 10.6 31 17-47 36-68 (327)
138 2qen_A Walker-type ATPase; unk 95.7 0.047 1.6E-06 55.7 10.8 34 15-48 21-54 (350)
139 1pjr_A PCRA; DNA repair, DNA r 95.7 0.014 4.7E-07 66.5 7.3 69 10-80 11-82 (724)
140 1vma_A Cell division protein F 95.7 0.055 1.9E-06 54.4 10.9 121 25-164 104-234 (306)
141 1sxj_D Activator 1 41 kDa subu 95.6 0.015 5E-07 59.9 6.6 31 17-47 48-80 (353)
142 2z4s_A Chromosomal replication 95.6 0.044 1.5E-06 58.4 10.5 38 25-62 130-168 (440)
143 2qby_B CDC6 homolog 3, cell di 95.6 0.033 1.1E-06 57.9 9.3 23 25-47 45-67 (384)
144 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.025 8.7E-07 54.1 7.8 39 22-61 20-58 (235)
145 1sxj_E Activator 1 40 kDa subu 95.5 0.038 1.3E-06 56.8 9.4 43 120-164 132-174 (354)
146 1sxj_A Activator 1 95 kDa subu 95.5 0.046 1.6E-06 59.5 10.2 24 26-49 78-101 (516)
147 3vfd_A Spastin; ATPase, microt 95.4 0.038 1.3E-06 57.9 9.0 24 25-48 148-171 (389)
148 3h4m_A Proteasome-activating n 95.4 0.01 3.5E-07 59.1 4.3 25 24-48 50-74 (285)
149 3b9p_A CG5977-PA, isoform A; A 95.3 0.05 1.7E-06 54.4 9.3 24 25-48 54-77 (297)
150 1sxj_C Activator 1 40 kDa subu 95.3 0.058 2E-06 55.2 9.7 28 20-47 39-68 (340)
151 3pfi_A Holliday junction ATP-d 95.2 0.087 3E-06 53.7 10.9 21 26-46 56-76 (338)
152 1d2n_A N-ethylmaleimide-sensit 95.2 0.16 5.6E-06 49.9 12.4 23 26-48 65-87 (272)
153 1ojl_A Transcriptional regulat 95.2 0.029 1E-06 56.6 6.9 24 23-46 23-46 (304)
154 1hqc_A RUVB; extended AAA-ATPa 95.1 0.073 2.5E-06 53.8 9.9 23 25-47 38-60 (324)
155 3eie_A Vacuolar protein sortin 95.1 0.03 1E-06 57.0 6.8 24 25-48 51-74 (322)
156 2qby_A CDC6 homolog 1, cell di 95.1 0.018 6.1E-07 59.8 5.1 24 25-48 45-68 (386)
157 2fna_A Conserved hypothetical 95.0 0.065 2.2E-06 54.8 9.2 25 25-49 30-54 (357)
158 3cf0_A Transitional endoplasmi 94.8 0.14 4.9E-06 51.3 11.0 25 24-48 48-72 (301)
159 1ls1_A Signal recognition part 94.7 0.17 5.9E-06 50.6 11.1 123 25-164 98-222 (295)
160 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.14 4.9E-06 49.8 10.4 24 25-48 39-62 (262)
161 2r6a_A DNAB helicase, replicat 94.7 0.031 1E-06 59.9 5.8 53 21-74 199-251 (454)
162 1xwi_A SKD1 protein; VPS4B, AA 94.6 0.037 1.3E-06 56.3 6.1 23 26-48 46-68 (322)
163 1sxj_B Activator 1 37 kDa subu 94.5 0.1 3.5E-06 52.6 9.1 32 16-47 31-64 (323)
164 3d8b_A Fidgetin-like protein 1 94.4 0.078 2.7E-06 54.7 8.1 24 25-48 117-140 (357)
165 2qp9_X Vacuolar protein sortin 94.3 0.036 1.2E-06 57.3 5.1 24 26-49 85-108 (355)
166 3pvs_A Replication-associated 94.2 0.079 2.7E-06 56.4 7.7 29 20-48 43-73 (447)
167 1w5s_A Origin recognition comp 94.2 0.04 1.4E-06 57.9 5.3 24 25-48 50-75 (412)
168 3e70_C DPA, signal recognition 94.1 0.11 3.7E-06 52.8 8.0 124 24-165 128-254 (328)
169 3b85_A Phosphate starvation-in 93.8 0.047 1.6E-06 51.7 4.5 38 9-46 6-43 (208)
170 1p9r_A General secretion pathw 93.8 0.08 2.7E-06 55.7 6.5 49 11-60 151-201 (418)
171 2eyu_A Twitching motility prot 93.7 0.034 1.2E-06 54.7 3.4 38 22-59 22-59 (261)
172 4fcw_A Chaperone protein CLPB; 93.7 0.19 6.4E-06 50.4 9.0 22 26-47 48-69 (311)
173 1g5t_A COB(I)alamin adenosyltr 93.6 0.045 1.5E-06 50.9 3.8 40 24-64 27-66 (196)
174 3k1j_A LON protease, ATP-depen 93.6 0.82 2.8E-05 50.6 14.8 32 16-47 51-82 (604)
175 2chq_A Replication factor C sm 93.4 0.04 1.4E-06 55.5 3.4 21 27-47 40-60 (319)
176 3t15_A Ribulose bisphosphate c 93.4 0.16 5.4E-06 50.8 7.8 24 26-49 37-60 (293)
177 2zan_A Vacuolar protein sortin 93.3 0.14 4.9E-06 54.4 7.6 24 25-48 167-190 (444)
178 4b4t_J 26S protease regulatory 93.1 0.094 3.2E-06 54.5 5.7 24 25-48 182-205 (405)
179 3jvv_A Twitching mobility prot 93.1 0.057 2E-06 55.6 4.0 38 23-60 121-158 (356)
180 1kgd_A CASK, peripheral plasma 93.0 0.059 2E-06 49.6 3.6 24 24-47 4-27 (180)
181 2ewv_A Twitching motility prot 92.8 0.054 1.8E-06 56.3 3.3 39 22-60 133-171 (372)
182 3pxi_A Negative regulator of g 92.7 0.26 8.9E-06 56.3 9.2 19 27-45 523-541 (758)
183 3co5_A Putative two-component 92.6 0.068 2.3E-06 47.1 3.3 28 16-43 18-45 (143)
184 4b4t_I 26S protease regulatory 92.5 0.093 3.2E-06 54.9 4.7 24 25-48 216-239 (437)
185 3hu3_A Transitional endoplasmi 92.5 0.23 7.8E-06 53.5 7.9 23 25-47 238-260 (489)
186 2yhs_A FTSY, cell division pro 92.5 0.67 2.3E-05 49.5 11.2 36 24-60 292-327 (503)
187 4b4t_H 26S protease regulatory 92.5 0.093 3.2E-06 55.4 4.6 25 24-48 242-266 (467)
188 2gza_A Type IV secretion syste 92.4 0.07 2.4E-06 55.2 3.6 28 21-48 171-198 (361)
189 2ffh_A Protein (FFH); SRP54, s 92.4 0.69 2.4E-05 48.6 11.2 55 25-80 98-154 (425)
190 2xxa_A Signal recognition part 92.4 0.32 1.1E-05 51.4 8.6 121 26-163 101-224 (433)
191 1lvg_A Guanylate kinase, GMP k 92.2 0.073 2.5E-06 49.8 3.2 24 24-47 3-26 (198)
192 4b4t_M 26S protease regulatory 92.2 0.075 2.6E-06 56.0 3.5 24 25-48 215-238 (434)
193 1j8m_F SRP54, signal recogniti 92.1 0.45 1.5E-05 47.5 9.0 121 26-164 99-224 (297)
194 2zts_A Putative uncharacterize 92.0 0.09 3.1E-06 50.8 3.7 52 22-74 27-78 (251)
195 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.11 3.9E-06 52.8 4.6 25 22-46 168-192 (330)
196 3tr0_A Guanylate kinase, GMP k 92.0 0.082 2.8E-06 49.4 3.2 25 23-47 5-29 (205)
197 3tau_A Guanylate kinase, GMP k 91.9 0.093 3.2E-06 49.5 3.6 25 24-48 7-31 (208)
198 2oap_1 GSPE-2, type II secreti 91.9 0.12 4E-06 56.1 4.6 26 21-46 256-281 (511)
199 4b4t_K 26S protease regulatory 91.8 0.31 1.1E-05 51.2 7.7 24 25-48 206-229 (428)
200 2dr3_A UPF0273 protein PH0284; 91.7 0.13 4.4E-06 49.5 4.4 51 22-74 20-70 (247)
201 3ney_A 55 kDa erythrocyte memb 91.7 0.11 3.6E-06 48.6 3.6 25 24-48 18-42 (197)
202 3cmu_A Protein RECA, recombina 91.7 0.17 6E-06 62.7 6.4 40 24-64 1426-1465(2050)
203 1jbk_A CLPB protein; beta barr 91.6 0.2 6.9E-06 45.6 5.4 35 14-48 30-66 (195)
204 2cvh_A DNA repair and recombin 91.5 0.091 3.1E-06 49.6 3.0 36 22-61 17-52 (220)
205 1z6g_A Guanylate kinase; struc 91.5 0.1 3.5E-06 49.6 3.3 26 22-47 20-45 (218)
206 1cr0_A DNA primase/helicase; R 91.4 0.11 3.7E-06 51.9 3.6 40 21-60 31-70 (296)
207 2v9p_A Replication protein E1; 91.4 0.11 3.7E-06 52.2 3.4 36 23-62 124-159 (305)
208 2ce7_A Cell division protein F 91.2 0.29 1E-05 52.3 6.9 23 26-48 50-72 (476)
209 1zu4_A FTSY; GTPase, signal re 91.2 1 3.5E-05 45.4 10.6 42 25-67 105-148 (320)
210 4gp7_A Metallophosphoesterase; 91.1 0.086 3E-06 48.0 2.3 22 23-44 7-28 (171)
211 2j41_A Guanylate kinase; GMP, 91.1 0.11 3.8E-06 48.5 3.1 25 22-46 3-27 (207)
212 3a00_A Guanylate kinase, GMP k 91.1 0.12 4.1E-06 47.7 3.3 23 25-47 1-23 (186)
213 1n0w_A DNA repair protein RAD5 91.1 0.21 7.1E-06 47.9 5.1 27 22-48 21-47 (243)
214 1zp6_A Hypothetical protein AT 91.1 0.077 2.6E-06 49.0 1.9 25 22-46 6-30 (191)
215 1znw_A Guanylate kinase, GMP k 90.9 0.14 4.8E-06 48.2 3.5 26 21-46 16-41 (207)
216 2ehv_A Hypothetical protein PH 90.9 0.14 4.8E-06 49.4 3.7 26 21-46 26-51 (251)
217 2p65_A Hypothetical protein PF 90.7 0.22 7.5E-06 45.2 4.7 33 16-48 32-66 (187)
218 3vaa_A Shikimate kinase, SK; s 90.7 0.15 5.1E-06 47.6 3.6 27 22-48 22-48 (199)
219 3umf_A Adenylate kinase; rossm 90.4 0.13 4.3E-06 48.9 2.8 28 22-49 26-53 (217)
220 2j37_W Signal recognition part 90.3 0.8 2.7E-05 49.2 9.2 121 27-164 103-225 (504)
221 1s96_A Guanylate kinase, GMP k 90.2 0.17 5.9E-06 48.1 3.6 27 22-48 13-39 (219)
222 3cf2_A TER ATPase, transitiona 89.9 0.29 9.9E-06 55.7 5.7 23 26-48 239-261 (806)
223 2qor_A Guanylate kinase; phosp 89.9 0.18 6.1E-06 47.2 3.4 27 22-48 9-35 (204)
224 2l8b_A Protein TRAI, DNA helic 89.7 0.89 3.1E-05 41.4 7.6 126 7-163 31-158 (189)
225 1ex7_A Guanylate kinase; subst 89.6 0.3 1E-05 45.1 4.6 23 26-48 2-24 (186)
226 3lw7_A Adenylate kinase relate 89.6 0.18 6.2E-06 45.4 3.0 20 26-45 2-21 (179)
227 3trf_A Shikimate kinase, SK; a 89.5 0.24 8.3E-06 45.3 3.9 24 25-48 5-28 (185)
228 3sr0_A Adenylate kinase; phosp 89.4 0.22 7.4E-06 46.9 3.5 23 27-49 2-24 (206)
229 1rj9_A FTSY, signal recognitio 89.2 0.33 1.1E-05 48.7 4.9 36 24-60 101-136 (304)
230 1e9r_A Conjugal transfer prote 89.1 0.23 8E-06 52.6 3.9 43 24-67 52-94 (437)
231 2dhr_A FTSH; AAA+ protein, hex 89.0 0.92 3.1E-05 48.8 8.5 23 26-48 65-87 (499)
232 2z43_A DNA repair and recombin 89.0 0.35 1.2E-05 49.0 5.0 40 23-62 105-149 (324)
233 1kht_A Adenylate kinase; phosp 89.0 0.23 7.9E-06 45.6 3.3 23 25-47 3-25 (192)
234 3b9q_A Chloroplast SRP recepto 88.9 0.58 2E-05 46.8 6.5 35 25-60 100-134 (302)
235 1kag_A SKI, shikimate kinase I 88.9 0.23 7.7E-06 44.9 3.2 23 25-47 4-26 (173)
236 4ag6_A VIRB4 ATPase, type IV s 88.9 0.33 1.1E-05 50.6 4.8 41 24-65 34-74 (392)
237 3a8t_A Adenylate isopentenyltr 88.9 0.2 6.9E-06 50.7 3.0 21 25-45 40-60 (339)
238 3lnc_A Guanylate kinase, GMP k 88.9 0.18 6.2E-06 48.2 2.6 25 22-46 24-48 (231)
239 4eun_A Thermoresistant glucoki 88.8 0.26 8.8E-06 46.0 3.6 25 23-47 27-51 (200)
240 3bh0_A DNAB-like replicative h 88.7 0.3 1E-05 49.3 4.2 56 19-76 62-117 (315)
241 3im1_A Protein SNU246, PRE-mRN 88.7 2.2 7.5E-05 43.1 10.7 67 409-475 1-70 (328)
242 3exa_A TRNA delta(2)-isopenten 88.7 0.23 7.8E-06 49.7 3.2 22 25-46 3-24 (322)
243 3kb2_A SPBC2 prophage-derived 88.6 0.24 8.3E-06 44.5 3.2 22 27-48 3-24 (173)
244 3hr8_A Protein RECA; alpha and 88.6 0.2 6.9E-06 51.4 2.8 41 23-64 59-99 (356)
245 2v3c_C SRP54, signal recogniti 88.5 0.18 6.2E-06 53.3 2.5 34 26-60 100-133 (432)
246 1qhx_A CPT, protein (chloramph 88.5 0.26 9.1E-06 44.7 3.4 24 25-48 3-26 (178)
247 2qmh_A HPR kinase/phosphorylas 88.4 0.23 7.8E-06 46.2 2.8 23 24-46 33-55 (205)
248 2ze6_A Isopentenyl transferase 88.4 0.27 9.1E-06 47.9 3.5 20 27-46 3-22 (253)
249 3cm0_A Adenylate kinase; ATP-b 88.2 0.2 7E-06 45.8 2.4 25 24-48 3-27 (186)
250 3hgt_A HDA1 complex subunit 3; 88.1 2 6.8E-05 43.1 9.6 116 206-353 115-240 (328)
251 1ly1_A Polynucleotide kinase; 88.0 0.28 9.7E-06 44.5 3.2 21 27-47 4-24 (181)
252 3c8u_A Fructokinase; YP_612366 88.0 0.23 8E-06 46.6 2.7 23 24-46 21-43 (208)
253 3cmu_A Protein RECA, recombina 88.0 0.37 1.3E-05 59.9 5.1 89 22-132 1078-1169(2050)
254 1nij_A Hypothetical protein YJ 88.0 0.31 1E-05 49.3 3.8 35 26-63 5-39 (318)
255 1qvr_A CLPB protein; coiled co 88.0 0.86 3E-05 52.7 8.0 20 26-45 589-608 (854)
256 2c95_A Adenylate kinase 1; tra 88.0 0.32 1.1E-05 44.9 3.6 27 22-48 6-32 (196)
257 1htw_A HI0065; nucleotide-bind 87.9 0.41 1.4E-05 42.9 4.1 26 23-48 31-56 (158)
258 3iij_A Coilin-interacting nucl 87.9 0.29 9.8E-06 44.6 3.2 25 24-48 10-34 (180)
259 1nlf_A Regulatory protein REPA 87.8 0.46 1.6E-05 46.8 4.9 27 22-48 27-53 (279)
260 2og2_A Putative signal recogni 87.8 0.73 2.5E-05 47.2 6.4 35 25-60 157-191 (359)
261 1zd8_A GTP:AMP phosphotransfer 87.7 0.35 1.2E-05 46.0 3.8 26 23-48 5-30 (227)
262 1v5w_A DMC1, meiotic recombina 87.6 0.5 1.7E-05 48.3 5.1 40 23-62 120-164 (343)
263 1knq_A Gluconate kinase; ALFA/ 87.6 0.28 9.7E-06 44.4 2.9 23 24-46 7-29 (175)
264 3tif_A Uncharacterized ABC tra 87.5 0.22 7.5E-06 48.0 2.2 24 23-46 29-52 (235)
265 3foz_A TRNA delta(2)-isopenten 87.5 0.31 1E-05 48.7 3.3 21 26-46 11-31 (316)
266 2bdt_A BH3686; alpha-beta prot 87.5 0.25 8.4E-06 45.5 2.5 21 26-46 3-23 (189)
267 1y63_A LMAJ004144AAA protein; 87.5 0.33 1.1E-05 44.6 3.3 24 24-47 9-32 (184)
268 2cbz_A Multidrug resistance-as 87.4 0.19 6.5E-06 48.5 1.7 24 23-46 29-52 (237)
269 2zr9_A Protein RECA, recombina 87.4 0.41 1.4E-05 49.0 4.3 39 22-61 58-96 (349)
270 3cf2_A TER ATPase, transitiona 87.4 0.69 2.3E-05 52.6 6.4 23 26-48 512-534 (806)
271 2bwj_A Adenylate kinase 5; pho 87.3 0.43 1.5E-05 44.1 4.1 28 21-48 8-35 (199)
272 1xjc_A MOBB protein homolog; s 87.2 0.52 1.8E-05 42.7 4.4 23 26-48 5-27 (169)
273 4a74_A DNA repair and recombin 87.2 0.29 9.9E-06 46.4 2.8 26 22-47 22-47 (231)
274 4g1u_C Hemin import ATP-bindin 87.1 0.5 1.7E-05 46.3 4.6 36 23-59 35-70 (266)
275 1zuh_A Shikimate kinase; alpha 87.0 0.43 1.5E-05 42.8 3.8 24 25-48 7-30 (168)
276 2v54_A DTMP kinase, thymidylat 87.0 0.37 1.3E-05 44.8 3.4 24 24-47 3-26 (204)
277 1c9k_A COBU, adenosylcobinamid 86.9 0.29 9.8E-06 44.9 2.5 45 28-77 2-46 (180)
278 3uie_A Adenylyl-sulfate kinase 86.9 0.33 1.1E-05 45.2 3.0 25 23-47 23-47 (200)
279 3tlx_A Adenylate kinase 2; str 86.9 0.38 1.3E-05 46.5 3.5 25 24-48 28-52 (243)
280 1ye8_A Protein THEP1, hypothet 86.9 0.39 1.3E-05 44.0 3.4 21 27-47 2-22 (178)
281 2rhm_A Putative kinase; P-loop 86.8 0.31 1.1E-05 44.8 2.7 23 25-47 5-27 (193)
282 3fb4_A Adenylate kinase; psych 86.7 0.39 1.3E-05 45.1 3.5 23 27-49 2-24 (216)
283 2q6t_A DNAB replication FORK h 86.7 0.33 1.1E-05 51.6 3.2 54 21-75 196-249 (444)
284 1gm5_A RECG; helicase, replica 86.7 0.53 1.8E-05 53.6 5.1 78 217-299 417-495 (780)
285 2r44_A Uncharacterized protein 86.7 0.5 1.7E-05 47.8 4.5 33 15-47 36-68 (331)
286 1sgw_A Putative ABC transporte 86.6 0.21 7.2E-06 47.3 1.5 23 23-45 33-55 (214)
287 3asz_A Uridine kinase; cytidin 86.6 0.33 1.1E-05 45.5 2.9 25 23-47 4-28 (211)
288 1f2t_A RAD50 ABC-ATPase; DNA d 86.5 0.4 1.4E-05 42.4 3.2 23 25-47 23-45 (149)
289 3dl0_A Adenylate kinase; phosp 86.5 0.42 1.4E-05 45.0 3.6 22 27-48 2-23 (216)
290 1gvn_B Zeta; postsegregational 86.5 0.57 2E-05 46.5 4.7 23 26-48 34-56 (287)
291 1qvr_A CLPB protein; coiled co 86.4 0.84 2.9E-05 52.8 6.7 32 17-48 181-214 (854)
292 1ofh_A ATP-dependent HSL prote 86.2 0.74 2.5E-05 45.8 5.4 23 25-47 50-72 (310)
293 2pcj_A ABC transporter, lipopr 86.2 0.34 1.1E-05 46.3 2.7 23 23-45 28-50 (224)
294 3lda_A DNA repair protein RAD5 86.2 0.44 1.5E-05 49.8 3.8 39 23-61 176-219 (400)
295 2i3b_A HCR-ntpase, human cance 86.1 0.43 1.5E-05 44.1 3.3 24 25-48 1-24 (189)
296 3gfo_A Cobalt import ATP-bindi 86.1 0.28 9.6E-06 48.4 2.2 24 23-46 32-55 (275)
297 3tqc_A Pantothenate kinase; bi 86.1 1.4 4.8E-05 44.4 7.3 20 27-46 94-113 (321)
298 3io5_A Recombination and repai 86.1 0.29 9.9E-06 49.0 2.2 42 24-66 28-70 (333)
299 3kta_A Chromosome segregation 86.0 0.47 1.6E-05 43.2 3.5 22 26-47 27-48 (182)
300 3t61_A Gluconokinase; PSI-biol 86.0 0.38 1.3E-05 44.8 2.9 23 26-48 19-41 (202)
301 2f1r_A Molybdopterin-guanine d 85.9 0.31 1E-05 44.4 2.1 23 26-48 3-25 (171)
302 3nh6_A ATP-binding cassette SU 85.9 0.22 7.7E-06 49.9 1.3 24 23-46 78-101 (306)
303 1b0u_A Histidine permease; ABC 85.9 0.26 8.9E-06 48.3 1.8 23 23-45 30-52 (262)
304 1nks_A Adenylate kinase; therm 85.8 0.39 1.4E-05 44.0 2.9 22 27-48 3-24 (194)
305 1mv5_A LMRA, multidrug resista 85.8 0.23 7.8E-06 48.1 1.2 24 23-46 26-49 (243)
306 1pzn_A RAD51, DNA repair and r 85.6 0.6 2E-05 47.8 4.4 27 23-49 129-155 (349)
307 2pze_A Cystic fibrosis transme 85.6 0.39 1.3E-05 45.9 2.9 24 23-46 32-55 (229)
308 3bgw_A DNAB-like replicative h 85.6 0.43 1.5E-05 50.6 3.5 53 22-76 194-246 (444)
309 3crm_A TRNA delta(2)-isopenten 85.6 0.47 1.6E-05 47.8 3.5 21 26-46 6-26 (323)
310 1cke_A CK, MSSA, protein (cyti 85.6 0.46 1.6E-05 45.0 3.3 24 25-48 5-28 (227)
311 1tev_A UMP-CMP kinase; ploop, 85.6 0.4 1.4E-05 44.0 2.9 24 25-48 3-26 (196)
312 1u94_A RECA protein, recombina 85.5 0.62 2.1E-05 47.8 4.5 40 22-62 60-99 (356)
313 1vpl_A ABC transporter, ATP-bi 85.5 0.28 9.5E-06 47.9 1.8 24 23-46 39-62 (256)
314 2plr_A DTMP kinase, probable t 85.5 0.41 1.4E-05 44.6 2.9 25 25-49 4-28 (213)
315 4a1f_A DNAB helicase, replicat 85.4 0.82 2.8E-05 46.4 5.2 57 16-74 37-93 (338)
316 2olj_A Amino acid ABC transpor 85.4 0.28 9.7E-06 48.1 1.8 24 23-46 48-71 (263)
317 2ff7_A Alpha-hemolysin translo 85.4 0.32 1.1E-05 47.1 2.2 24 23-46 33-56 (247)
318 1g6h_A High-affinity branched- 85.3 0.4 1.4E-05 46.8 2.8 24 23-46 31-54 (257)
319 1aky_A Adenylate kinase; ATP:A 85.3 0.5 1.7E-05 44.6 3.4 24 25-48 4-27 (220)
320 2yvu_A Probable adenylyl-sulfa 85.2 0.71 2.4E-05 42.2 4.4 36 24-60 12-47 (186)
321 1ji0_A ABC transporter; ATP bi 85.1 0.42 1.4E-05 46.1 2.8 24 23-46 30-53 (240)
322 2bbw_A Adenylate kinase 4, AK4 85.1 0.54 1.8E-05 45.4 3.6 25 24-48 26-50 (246)
323 3nbx_X ATPase RAVA; AAA+ ATPas 85.1 0.68 2.3E-05 49.8 4.7 30 16-45 32-61 (500)
324 2zu0_C Probable ATP-dependent 85.1 0.37 1.3E-05 47.3 2.4 24 23-46 44-67 (267)
325 2pez_A Bifunctional 3'-phospho 85.0 0.46 1.6E-05 43.2 2.9 23 24-46 4-26 (179)
326 1q57_A DNA primase/helicase; d 85.0 0.42 1.4E-05 51.7 3.1 59 16-75 233-291 (503)
327 3d3q_A TRNA delta(2)-isopenten 85.0 0.51 1.7E-05 47.9 3.5 21 26-46 8-28 (340)
328 2jaq_A Deoxyguanosine kinase; 85.0 0.47 1.6E-05 43.9 3.0 22 27-48 2-23 (205)
329 1lv7_A FTSH; alpha/beta domain 84.9 0.91 3.1E-05 43.9 5.2 24 25-48 45-68 (257)
330 2ghi_A Transport protein; mult 84.8 0.36 1.2E-05 47.2 2.2 24 23-46 44-67 (260)
331 3hws_A ATP-dependent CLP prote 84.8 0.97 3.3E-05 46.4 5.6 24 24-47 50-73 (363)
332 2ihy_A ABC transporter, ATP-bi 84.8 0.31 1.1E-05 48.3 1.7 23 23-45 45-67 (279)
333 1nn5_A Similar to deoxythymidy 84.8 0.95 3.2E-05 42.2 5.1 25 24-48 8-32 (215)
334 2yz2_A Putative ABC transporte 84.7 0.31 1.1E-05 47.8 1.7 23 23-45 31-53 (266)
335 2qt1_A Nicotinamide riboside k 84.7 0.47 1.6E-05 44.3 2.9 25 22-46 18-42 (207)
336 2wwf_A Thymidilate kinase, put 84.7 0.52 1.8E-05 44.0 3.2 24 24-47 9-32 (212)
337 2d2e_A SUFC protein; ABC-ATPas 84.6 0.39 1.3E-05 46.7 2.3 24 23-46 27-50 (250)
338 1e6c_A Shikimate kinase; phosp 84.6 0.51 1.7E-05 42.4 3.0 23 26-48 3-25 (173)
339 2cdn_A Adenylate kinase; phosp 84.5 0.58 2E-05 43.4 3.4 23 26-48 21-43 (201)
340 1zak_A Adenylate kinase; ATP:A 84.4 0.52 1.8E-05 44.6 3.1 24 25-48 5-28 (222)
341 3cmw_A Protein RECA, recombina 84.4 0.68 2.3E-05 56.8 4.7 55 24-83 1430-1484(1706)
342 1ukz_A Uridylate kinase; trans 84.3 0.63 2.2E-05 43.2 3.6 23 26-48 16-38 (203)
343 1w36_B RECB, exodeoxyribonucle 84.3 1.1 3.6E-05 54.0 6.3 52 27-78 18-80 (1180)
344 1e4v_A Adenylate kinase; trans 84.2 0.59 2E-05 43.9 3.4 23 27-49 2-24 (214)
345 1in4_A RUVB, holliday junction 84.2 0.73 2.5E-05 46.8 4.3 23 26-48 52-74 (334)
346 2z0h_A DTMP kinase, thymidylat 84.2 0.51 1.7E-05 43.5 2.8 21 27-47 2-22 (197)
347 2qi9_C Vitamin B12 import ATP- 84.2 0.5 1.7E-05 45.8 2.9 24 23-46 24-47 (249)
348 4eaq_A DTMP kinase, thymidylat 84.2 1.2 4.2E-05 42.4 5.6 26 24-49 25-50 (229)
349 1rz3_A Hypothetical protein rb 84.0 0.82 2.8E-05 42.5 4.3 31 16-46 8-43 (201)
350 1qf9_A UMP/CMP kinase, protein 84.0 0.53 1.8E-05 43.1 2.9 23 26-48 7-29 (194)
351 1np6_A Molybdopterin-guanine d 84.0 0.65 2.2E-05 42.3 3.4 23 26-48 7-29 (174)
352 2ixe_A Antigen peptide transpo 83.7 0.43 1.5E-05 47.0 2.2 25 22-46 42-66 (271)
353 2iyv_A Shikimate kinase, SK; t 83.7 0.71 2.4E-05 42.1 3.6 23 26-48 3-25 (184)
354 2pt5_A Shikimate kinase, SK; a 83.6 0.6 2.1E-05 41.8 3.0 21 27-47 2-22 (168)
355 1via_A Shikimate kinase; struc 83.5 0.6 2E-05 42.3 3.0 22 27-48 6-27 (175)
356 3qf7_A RAD50; ABC-ATPase, ATPa 83.4 0.59 2E-05 48.2 3.2 22 26-47 24-45 (365)
357 3eph_A TRNA isopentenyltransfe 83.3 0.6 2E-05 48.5 3.2 21 26-46 3-23 (409)
358 2xb4_A Adenylate kinase; ATP-b 83.3 0.6 2.1E-05 44.3 3.0 22 27-48 2-23 (223)
359 2i1q_A DNA repair and recombin 83.3 0.75 2.6E-05 46.4 3.9 27 23-49 96-122 (322)
360 2pbr_A DTMP kinase, thymidylat 83.2 0.62 2.1E-05 42.7 3.0 21 27-47 2-22 (195)
361 1gtv_A TMK, thymidylate kinase 83.2 0.36 1.2E-05 45.2 1.4 22 27-48 2-23 (214)
362 1m7g_A Adenylylsulfate kinase; 83.1 0.67 2.3E-05 43.5 3.2 25 22-46 22-46 (211)
363 2vli_A Antibiotic resistance p 83.1 0.5 1.7E-05 43.0 2.2 24 25-48 5-28 (183)
364 3be4_A Adenylate kinase; malar 83.1 0.69 2.4E-05 43.6 3.3 24 25-48 5-28 (217)
365 1tue_A Replication protein E1; 83.1 0.61 2.1E-05 43.6 2.8 20 26-45 59-78 (212)
366 1xp8_A RECA protein, recombina 83.1 0.88 3E-05 46.8 4.3 40 22-62 71-110 (366)
367 1ak2_A Adenylate kinase isoenz 83.0 0.81 2.8E-05 43.7 3.9 25 24-48 15-39 (233)
368 2nq2_C Hypothetical ABC transp 82.7 0.73 2.5E-05 44.8 3.4 24 23-46 29-52 (253)
369 2bbs_A Cystic fibrosis transme 82.5 0.42 1.4E-05 47.6 1.6 23 23-45 62-84 (290)
370 4e22_A Cytidylate kinase; P-lo 82.5 0.78 2.7E-05 44.5 3.5 26 23-48 25-50 (252)
371 2vp4_A Deoxynucleoside kinase; 82.4 0.54 1.9E-05 44.9 2.3 22 24-45 19-40 (230)
372 1ixz_A ATP-dependent metallopr 82.1 0.71 2.4E-05 44.7 3.1 23 26-48 50-72 (254)
373 3a4m_A L-seryl-tRNA(SEC) kinas 82.0 0.68 2.3E-05 45.1 2.9 22 25-46 4-25 (260)
374 3nwj_A ATSK2; P loop, shikimat 82.0 0.65 2.2E-05 45.0 2.7 23 25-47 48-70 (250)
375 1jjv_A Dephospho-COA kinase; P 81.7 0.75 2.6E-05 42.8 3.0 19 27-45 4-22 (206)
376 3fvq_A Fe(3+) IONS import ATP- 81.7 0.57 1.9E-05 48.0 2.3 24 23-46 28-51 (359)
377 3auy_A DNA double-strand break 81.7 0.71 2.4E-05 47.7 3.1 23 25-47 25-47 (371)
378 3aez_A Pantothenate kinase; tr 81.6 0.74 2.5E-05 46.3 3.1 24 23-46 88-111 (312)
379 2jeo_A Uridine-cytidine kinase 81.6 0.66 2.3E-05 44.7 2.6 25 22-46 22-46 (245)
380 3uk6_A RUVB-like 2; hexameric 81.5 1.3 4.4E-05 45.3 5.0 24 26-49 71-94 (368)
381 2if2_A Dephospho-COA kinase; a 81.5 0.81 2.8E-05 42.5 3.1 20 27-46 3-22 (204)
382 2onk_A Molybdate/tungstate ABC 81.3 0.62 2.1E-05 44.9 2.3 23 23-46 23-45 (240)
383 2pjz_A Hypothetical protein ST 81.0 0.74 2.5E-05 45.0 2.7 21 25-45 30-50 (263)
384 2r2a_A Uncharacterized protein 81.0 1.4 4.7E-05 41.1 4.5 23 27-49 7-29 (199)
385 1tf7_A KAIC; homohexamer, hexa 81.0 1 3.6E-05 48.8 4.2 26 22-47 36-61 (525)
386 3qks_A DNA double-strand break 80.9 0.89 3.1E-05 42.5 3.2 23 25-47 23-45 (203)
387 3rlf_A Maltose/maltodextrin im 80.9 0.67 2.3E-05 47.9 2.4 24 23-46 27-50 (381)
388 1z47_A CYSA, putative ABC-tran 80.9 0.65 2.2E-05 47.5 2.3 24 23-46 39-62 (355)
389 2ius_A DNA translocase FTSK; n 80.7 1.4 4.8E-05 47.4 4.9 24 24-47 166-189 (512)
390 3hjh_A Transcription-repair-co 80.7 3.6 0.00012 43.9 8.2 53 24-80 13-65 (483)
391 3gd7_A Fusion complex of cysti 80.3 0.68 2.3E-05 48.1 2.3 24 23-46 45-68 (390)
392 2yyz_A Sugar ABC transporter, 80.3 0.71 2.4E-05 47.3 2.4 24 23-46 27-50 (359)
393 2p5t_B PEZT; postsegregational 80.3 0.67 2.3E-05 44.9 2.1 23 26-48 33-55 (253)
394 1uf9_A TT1252 protein; P-loop, 80.2 0.89 3E-05 42.0 2.9 21 26-46 9-29 (203)
395 3b5x_A Lipid A export ATP-bind 80.2 1 3.5E-05 49.5 3.9 37 22-59 366-402 (582)
396 2qm8_A GTPase/ATPase; G protei 80.0 1.2 4.1E-05 45.3 4.0 43 17-60 43-89 (337)
397 4edh_A DTMP kinase, thymidylat 80.0 1.8 6E-05 40.8 4.9 24 24-47 5-28 (213)
398 2it1_A 362AA long hypothetical 79.9 0.75 2.6E-05 47.2 2.4 24 23-46 27-50 (362)
399 1tf7_A KAIC; homohexamer, hexa 79.9 1.4 4.8E-05 47.8 4.7 40 22-62 278-317 (525)
400 2vhj_A Ntpase P4, P4; non- hyd 79.7 1 3.5E-05 45.3 3.2 25 24-48 122-146 (331)
401 1vht_A Dephospho-COA kinase; s 79.7 0.82 2.8E-05 43.0 2.5 21 25-45 4-24 (218)
402 3d31_A Sulfate/molybdate ABC t 79.6 0.67 2.3E-05 47.3 2.0 24 23-46 24-47 (348)
403 1odf_A YGR205W, hypothetical 3 79.6 0.97 3.3E-05 44.9 3.1 21 26-46 32-52 (290)
404 1tq4_A IIGP1, interferon-induc 79.6 1.6 5.6E-05 45.5 4.9 20 27-46 71-90 (413)
405 1iy2_A ATP-dependent metallopr 79.4 0.98 3.4E-05 44.4 3.1 23 26-48 74-96 (278)
406 1v43_A Sugar-binding transport 79.1 0.82 2.8E-05 47.1 2.4 24 23-46 35-58 (372)
407 1pui_A ENGB, probable GTP-bind 79.0 0.81 2.8E-05 42.5 2.2 22 23-44 24-45 (210)
408 1svm_A Large T antigen; AAA+ f 79.0 0.92 3.1E-05 46.9 2.8 25 23-47 167-191 (377)
409 4tmk_A Protein (thymidylate ki 78.8 2.7 9.2E-05 39.5 5.8 24 24-47 2-25 (213)
410 2x8a_A Nuclear valosin-contain 78.7 1 3.6E-05 44.2 3.0 23 26-48 45-67 (274)
411 3pxg_A Negative regulator of g 78.6 1.8 6.2E-05 46.1 5.1 29 17-45 191-221 (468)
412 3tui_C Methionine import ATP-b 78.6 0.88 3E-05 46.7 2.4 24 23-46 52-75 (366)
413 3tmk_A Thymidylate kinase; pho 78.2 1.3 4.6E-05 41.7 3.5 36 24-62 4-39 (216)
414 1g29_1 MALK, maltose transport 78.0 1.3 4.4E-05 45.7 3.5 24 23-46 27-50 (372)
415 3v9p_A DTMP kinase, thymidylat 77.9 1.1 3.9E-05 42.6 2.9 26 22-47 22-47 (227)
416 3sop_A Neuronal-specific septi 77.9 1.2 4E-05 43.8 3.1 21 27-47 4-24 (270)
417 2www_A Methylmalonic aciduria 77.9 1.5 5.3E-05 44.7 4.1 35 25-60 74-108 (349)
418 2yv5_A YJEQ protein; hydrolase 77.8 2.1 7.1E-05 42.7 4.9 25 22-46 162-186 (302)
419 1oxx_K GLCV, glucose, ABC tran 77.8 0.68 2.3E-05 47.4 1.3 24 23-46 29-52 (353)
420 1sq5_A Pantothenate kinase; P- 77.7 1.1 3.9E-05 44.8 3.0 24 24-47 79-102 (308)
421 2dyk_A GTP-binding protein; GT 77.6 1.4 4.8E-05 38.6 3.2 21 27-47 3-23 (161)
422 2c9o_A RUVB-like 1; hexameric 77.5 2.1 7.3E-05 45.4 5.2 23 26-48 64-86 (456)
423 2rcn_A Probable GTPase ENGC; Y 77.5 1.8 6.1E-05 44.3 4.4 25 22-46 212-236 (358)
424 4hlc_A DTMP kinase, thymidylat 77.4 2.1 7.2E-05 40.0 4.5 36 26-63 3-39 (205)
425 1ltq_A Polynucleotide kinase; 77.4 1.2 4.2E-05 44.2 3.1 22 26-47 3-24 (301)
426 2grj_A Dephospho-COA kinase; T 77.4 1.3 4.4E-05 41.0 3.0 23 25-47 12-34 (192)
427 3qkt_A DNA double-strand break 77.3 1.2 4.3E-05 45.2 3.2 22 25-46 23-44 (339)
428 3r20_A Cytidylate kinase; stru 77.2 1.5 5.2E-05 41.9 3.5 25 24-48 8-32 (233)
429 1um8_A ATP-dependent CLP prote 77.1 1.4 4.9E-05 45.3 3.7 23 25-47 72-94 (376)
430 4a82_A Cystic fibrosis transme 77.0 0.8 2.7E-05 50.4 1.7 23 23-45 365-387 (578)
431 4b4t_L 26S protease subunit RP 76.9 2.2 7.6E-05 44.8 5.0 24 25-48 215-238 (437)
432 4f4c_A Multidrug resistance pr 76.7 0.9 3.1E-05 55.1 2.2 37 22-59 1102-1138(1321)
433 1z2a_A RAS-related protein RAB 76.6 1.5 5.1E-05 38.6 3.2 21 27-47 7-27 (168)
434 2ce2_X GTPase HRAS; signaling 76.5 1.5 5E-05 38.5 3.1 22 27-48 5-26 (166)
435 3lv8_A DTMP kinase, thymidylat 76.3 3.4 0.00011 39.5 5.7 25 24-48 26-50 (236)
436 2f9l_A RAB11B, member RAS onco 76.1 1.5 5.2E-05 40.3 3.2 21 27-47 7-27 (199)
437 2ged_A SR-beta, signal recogni 75.9 1.6 5.4E-05 39.7 3.2 23 26-48 49-71 (193)
438 2r62_A Cell division protease 75.8 0.81 2.8E-05 44.6 1.2 24 25-48 44-67 (268)
439 2npi_A Protein CLP1; CLP1-PCF1 75.8 1.2 4E-05 47.4 2.5 25 22-46 135-159 (460)
440 1lw7_A Transcriptional regulat 75.7 1.3 4.5E-05 45.5 2.9 23 25-47 170-192 (365)
441 1oix_A RAS-related protein RAB 75.7 1.6 5.3E-05 40.0 3.1 22 27-48 31-52 (191)
442 1yrb_A ATP(GTP)binding protein 75.5 2.5 8.5E-05 40.8 4.7 33 26-60 15-47 (262)
443 2r8r_A Sensor protein; KDPD, P 75.5 2.3 7.8E-05 40.3 4.2 22 27-48 8-29 (228)
444 1ky3_A GTP-binding protein YPT 75.4 1.7 5.8E-05 38.9 3.2 22 27-48 10-31 (182)
445 3cr8_A Sulfate adenylyltranfer 75.3 1.8 6.2E-05 47.1 3.9 25 23-47 367-391 (552)
446 1kao_A RAP2A; GTP-binding prot 75.2 1.7 6E-05 38.0 3.2 21 27-47 5-25 (167)
447 3qf4_A ABC transporter, ATP-bi 75.2 0.95 3.3E-05 49.9 1.7 24 23-46 367-390 (587)
448 1ek0_A Protein (GTP-binding pr 75.2 1.7 5.9E-05 38.2 3.2 22 27-48 5-26 (170)
449 1z0j_A RAB-22, RAS-related pro 75.1 1.8 6E-05 38.2 3.2 22 27-48 8-29 (170)
450 3hjn_A DTMP kinase, thymidylat 74.9 3.5 0.00012 38.1 5.3 37 28-65 3-40 (197)
451 1u8z_A RAS-related protein RAL 74.7 1.8 6.2E-05 38.0 3.2 22 27-48 6-27 (168)
452 2ocp_A DGK, deoxyguanosine kin 74.6 2.4 8.3E-05 40.4 4.3 24 25-48 2-25 (241)
453 2wji_A Ferrous iron transport 74.6 1.8 6.3E-05 38.4 3.2 20 27-46 5-24 (165)
454 1g16_A RAS-related protein SEC 74.6 1.7 6E-05 38.3 3.1 21 27-47 5-25 (170)
455 3b60_A Lipid A export ATP-bind 74.4 1.2 4E-05 49.1 2.1 24 23-46 367-390 (582)
456 1uj2_A Uridine-cytidine kinase 74.4 1.6 5.6E-05 42.1 3.0 22 26-47 23-44 (252)
457 3ake_A Cytidylate kinase; CMP 74.3 1.7 5.8E-05 40.2 3.0 21 27-47 4-24 (208)
458 2erx_A GTP-binding protein DI- 74.3 1.9 6.5E-05 38.0 3.2 21 27-47 5-25 (172)
459 2iut_A DNA translocase FTSK; n 74.2 2.8 9.7E-05 45.5 5.0 26 24-49 213-238 (574)
460 1p5z_B DCK, deoxycytidine kina 74.2 1.3 4.6E-05 43.0 2.3 22 24-45 23-44 (263)
461 1wms_A RAB-9, RAB9, RAS-relate 74.0 1.9 6.6E-05 38.4 3.2 22 27-48 9-30 (177)
462 1g8p_A Magnesium-chelatase 38 74.0 2 6.9E-05 43.4 3.8 24 24-47 44-67 (350)
463 2f6r_A COA synthase, bifunctio 73.9 1.6 5.6E-05 43.0 2.9 21 26-46 76-96 (281)
464 3p32_A Probable GTPase RV1496/ 73.8 2.8 9.4E-05 42.9 4.7 34 26-60 80-113 (355)
465 1u0l_A Probable GTPase ENGC; p 73.8 2.3 7.7E-05 42.4 3.9 25 22-46 166-190 (301)
466 1c1y_A RAS-related protein RAP 73.6 2 6.8E-05 37.7 3.2 21 27-47 5-25 (167)
467 3qf4_B Uncharacterized ABC tra 73.5 0.98 3.3E-05 49.9 1.2 25 22-46 378-402 (598)
468 1svi_A GTP-binding protein YSX 73.5 1.8 6E-05 39.5 2.8 22 25-46 23-44 (195)
469 1z08_A RAS-related protein RAB 73.4 2 6.9E-05 37.9 3.2 22 27-48 8-29 (170)
470 2gj8_A MNME, tRNA modification 73.3 1.8 6.2E-05 38.8 2.8 23 25-47 4-26 (172)
471 3pqc_A Probable GTP-binding pr 73.2 1.8 6.2E-05 39.3 2.8 22 26-47 24-45 (195)
472 2qag_B Septin-6, protein NEDD5 73.1 1.3 4.5E-05 46.3 2.1 25 22-46 37-63 (427)
473 1nrj_B SR-beta, signal recogni 72.9 2 6.9E-05 40.0 3.2 23 26-48 13-35 (218)
474 2eyq_A TRCF, transcription-rep 72.8 3.7 0.00013 48.9 6.1 79 216-299 651-730 (1151)
475 2lkc_A Translation initiation 72.7 2.5 8.5E-05 37.6 3.7 24 24-47 7-30 (178)
476 2wsm_A Hydrogenase expression/ 72.7 2.2 7.4E-05 39.9 3.3 26 24-49 29-54 (221)
477 2wjg_A FEOB, ferrous iron tran 72.5 2.1 7.3E-05 38.6 3.2 21 27-47 9-29 (188)
478 1e69_A Chromosome segregation 72.4 1.7 5.7E-05 43.8 2.6 22 26-47 25-46 (322)
479 1r2q_A RAS-related protein RAB 72.4 2.2 7.6E-05 37.5 3.2 21 27-47 8-28 (170)
480 3zvl_A Bifunctional polynucleo 72.4 2.1 7.2E-05 44.9 3.4 23 25-47 258-280 (416)
481 1q3t_A Cytidylate kinase; nucl 72.4 2.2 7.5E-05 40.6 3.3 24 24-47 15-38 (236)
482 2nzj_A GTP-binding protein REM 72.3 2.3 7.7E-05 37.8 3.2 20 27-46 6-25 (175)
483 3q85_A GTP-binding protein REM 72.1 2.3 7.7E-05 37.6 3.2 20 27-46 4-23 (169)
484 3tqf_A HPR(Ser) kinase; transf 72.0 2.3 7.7E-05 38.5 3.0 24 24-47 15-38 (181)
485 2p67_A LAO/AO transport system 71.9 2.5 8.7E-05 42.9 3.9 25 24-48 55-79 (341)
486 3m6a_A ATP-dependent protease 71.9 2 7E-05 46.7 3.3 24 24-47 107-130 (543)
487 3oiy_A Reverse gyrase helicase 71.6 5.2 0.00018 41.5 6.3 79 215-299 62-144 (414)
488 2y8e_A RAB-protein 6, GH09086P 71.6 2.2 7.7E-05 37.9 3.1 21 27-47 16-36 (179)
489 3lxx_A GTPase IMAP family memb 71.5 2.3 7.8E-05 40.5 3.2 22 26-47 30-51 (239)
490 2zej_A Dardarin, leucine-rich 71.4 1.9 6.5E-05 39.1 2.5 20 27-46 4-23 (184)
491 2fn4_A P23, RAS-related protei 71.3 2.3 8E-05 37.9 3.1 22 27-48 11-32 (181)
492 1u0j_A DNA replication protein 71.3 4.1 0.00014 39.6 5.0 20 27-46 106-125 (267)
493 3pxi_A Negative regulator of g 71.1 3.4 0.00012 47.0 5.1 31 16-46 190-222 (758)
494 4dsu_A GTPase KRAS, isoform 2B 70.9 2.5 8.6E-05 38.0 3.2 21 27-47 6-26 (189)
495 2efe_B Small GTP-binding prote 70.8 2.5 8.6E-05 37.7 3.2 21 27-47 14-34 (181)
496 1z0f_A RAB14, member RAS oncog 70.8 2.5 8.6E-05 37.6 3.2 22 27-48 17-38 (179)
497 3con_A GTPase NRAS; structural 70.7 2.5 8.5E-05 38.3 3.2 22 27-48 23-44 (190)
498 3ld9_A DTMP kinase, thymidylat 70.7 2.2 7.6E-05 40.4 2.9 24 24-47 20-43 (223)
499 2yl4_A ATP-binding cassette SU 70.6 1.3 4.3E-05 49.0 1.3 24 23-46 368-391 (595)
500 4f4c_A Multidrug resistance pr 70.6 1.4 4.9E-05 53.3 1.9 26 23-48 442-467 (1321)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=8e-109 Score=947.52 Aligned_cols=629 Identities=53% Similarity=0.881 Sum_probs=582.1
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+++.|..+|++.+|+++...+.++++++++||||||||+++|+++....... +.+++|++|+|+++.|++++++++++
T Consensus 86 ~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~ 165 (773)
T 2xau_A 86 ILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD 165 (773)
T ss_dssp HHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC
Confidence 4567789999999999999999999999999999999999999988765443 45799999999999999999999999
Q ss_pred CccCcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 80 VKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 80 ~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
..+|..+||.++++......++|+++|+|++++.+..++.+.++++|||||+|+|+++.+.++.+++.+...+++.++|+
T Consensus 166 ~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl 245 (773)
T 2xau_A 166 VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIII 245 (773)
T ss_dssp CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEE
Confidence 99999999999998888889999999999999999999999999999999999999999999999999988888999999
Q ss_pred EccCCChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHH
Q 041899 160 SSATLDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKE 239 (650)
Q Consensus 160 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~ 239 (650)
||||++.+.+.+|+++++++.++++.+|++++|...+..++....+..+.+++...+++++||||+++++++.+++.|.+
T Consensus 246 ~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 325 (773)
T 2xau_A 246 MSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325 (773)
T ss_dssp EESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888899888888888888777789999999999999999999987
Q ss_pred HHHhh--cCCCCceEEEeecCCCCHHHHhhhcCCCC-----CCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899 240 RIRKL--GTKIGELIVCPVYANLPTELQAKIFVPTP-----DGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK 312 (650)
Q Consensus 240 ~~~~~--~~~~~~~~v~~lh~~l~~~~r~~i~~~~~-----~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~ 312 (650)
....+ .....++.+.++||+|+.++|.++++.|+ +|.++||||||++|+|||||+|++|||+|+.|.+.||+.
T Consensus 326 ~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~ 405 (773)
T 2xau_A 326 EGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPR 405 (773)
T ss_dssp HHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETT
T ss_pred HHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccc
Confidence 54333 12234788999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCC
Q 041899 313 TGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDS 392 (650)
Q Consensus 313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~ 392 (650)
+|++.|...|+|.++|.||+|||||.++|.||+||+++++...+.++..|||++.+|.+++|.++.+|+.++..|+|++|
T Consensus 406 ~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~ 485 (773)
T 2xau_A 406 IRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDP 485 (773)
T ss_dssp TTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSC
T ss_pred cCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCC
Confidence 99999999999999999999999999999999999999986679999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCccccCcchHHH
Q 041899 393 PPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSVFYRPKNKKFL 472 (650)
Q Consensus 393 p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~f~~~~~~~~~ 472 (650)
|+.+++..|++.|..+||||.+|++|++|+.|+.||+||++||||+.|..++|++++++|||+|++ +++|++|.+.+.+
T Consensus 486 p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~-~~~f~~~~~~~~~ 564 (773)
T 2xau_A 486 PAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSV-PNVFIRPTKDKKR 564 (773)
T ss_dssp CCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTS-CCCBCCCTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhccc-CCcccCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHhhcC---cc-hhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCCc----c
Q 041899 473 ADNARMNFYQGDAGDHIALLNVYNSWKEND---YS-KQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSSL----C 544 (650)
Q Consensus 473 ~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~---~~-~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~----~ 544 (650)
++.+++.|... .|||++++|+|++|.+.. .+ .+||++||||+++|+++.++|.||.+++++.+++..++. +
T Consensus 565 ~~~~~~~f~~~-~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~ 643 (773)
T 2xau_A 565 ADDAKNIFAHP-DGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPK 643 (773)
T ss_dssp HHHHHHTTCCT-TBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTT
T ss_pred HHHHHHhccCC-CCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchh
Confidence 99999999864 599999999999997654 44 789999999999999999999999999999888765432 4
Q ss_pred cHHHHHHHHHhcccccceEEccCCC-EEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhHc
Q 041899 545 NLEAMKKAIISGFLLHTARLQKNGS-YWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEIA 623 (650)
Q Consensus 545 ~~~~~~~~~~~g~~~~va~~~~~~~-y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~~ 623 (650)
+++.+++||++|||+|||++.++|. |.++.+++.|+|||+|+|. ..|+||||+|++.|++.|||++|+|+|+||.+++
T Consensus 644 ~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~v~~e~~~t~~~~~~~~~~i~~~~l~~~~ 722 (773)
T 2xau_A 644 YFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIA 722 (773)
T ss_dssp HHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEEEEEEEEESSSEEEEEEEECCHHHHHHHC
T ss_pred hHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEEEEEEeeccchhheeecccCCHHHHHHHH
Confidence 5678999999999999999988775 9999999999999999995 3599999999999999999999999999999999
Q ss_pred Cccceeeeec
Q 041899 624 PHYYMLKDVE 633 (650)
Q Consensus 624 ~~~~~~~~~~ 633 (650)
|++|...+..
T Consensus 723 ~~~~~~~~~~ 732 (773)
T 2xau_A 723 PAYYDLSNFQ 732 (773)
T ss_dssp TTTSCGGGCC
T ss_pred HHheeeccCC
Confidence 9999766654
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.6e-57 Score=521.89 Aligned_cols=510 Identities=16% Similarity=0.140 Sum_probs=367.2
Q ss_pred CCchHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH--HhCCccCcE
Q 041899 9 LPIYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR--EMGVKLGHE 85 (650)
Q Consensus 9 lpl~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~--~~~~~~g~~ 85 (650)
-.++++|.++++. +.++++++++||||||||+++++++++....++++++|++|+|+|+.|+++++.. .+|..++..
T Consensus 29 ~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~ 108 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMT 108 (715)
T ss_dssp CBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEEC
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 3689999999999 7899999999999999999999999876544577999999999999999999932 346667777
Q ss_pred eeeeecccccCCCCceEEEEChHHHHHHHhcCCC-CCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 86 VGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPK-LESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 86 vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
+|+..+.+... ..++|+|+|++++.+.+..++. ++++++|||||+|+.+- .+. ...+..+....+++++|+||||+
T Consensus 109 ~G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~-~~~-~~~l~~i~~~~~~~~ii~lSATl 185 (715)
T 2va8_A 109 SGDYDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLND-PER-GPVVESVTIRAKRRNLLALSATI 185 (715)
T ss_dssp CSCSSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGC-TTT-HHHHHHHHHHHHTSEEEEEESCC
T ss_pred eCCCCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCC-ccc-chHHHHHHHhcccCcEEEEcCCC
Confidence 77665555433 3789999999999998888775 89999999999996441 111 12223332222389999999999
Q ss_pred -ChHHHHhhhCCCCccccCCcccceeEEEecCC--------------CCch--HHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 165 -DAEKFSAYFNFAPILRVPGRRYPVEIHYTKAP--------------ESNY--IDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~--~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
+.+.+++|++ ++.+..+++.+|+...+.... ...+ .......+.+.+ .+++++||||+++
T Consensus 186 ~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~ 262 (715)
T 2va8_A 186 SNYKQIAKWLG-AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL--SKNGQVLVFRNSR 262 (715)
T ss_dssp TTHHHHHHHHT-CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH--TTTCCEEEECSSH
T ss_pred CCHHHHHHHhC-CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH--hcCCCEEEEECCH
Confidence 6999999997 566777888888765542211 0000 122233333333 3579999999999
Q ss_pred HHHHHHHHHHHHHHHh-------------hcCCC--------------CceEEEeecCCCCHHHHhhhcCCCCCCCcEEE
Q 041899 228 EEIETVEEILKERIRK-------------LGTKI--------------GELIVCPVYANLPTELQAKIFVPTPDGARKVV 280 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~-------------~~~~~--------------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kil 280 (650)
++++.++..|.+.... ..... -...+.++||+|+.++|..+++.|++|.++||
T Consensus 263 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vl 342 (715)
T 2va8_A 263 KMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVI 342 (715)
T ss_dssp HHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEE
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999864211 00000 01247889999999999999999999999999
Q ss_pred EeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccc-ccccc
Q 041899 281 LATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINS-YQEDM 356 (650)
Q Consensus 281 vaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~-~~~~~ 356 (650)
|||+++++|||+|++++||++ ...||++.+.. ..|.|.++|.||+|||||.| +|.||+++++.+ +...+
T Consensus 343 vaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 415 (715)
T 2va8_A 343 VATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVF 415 (715)
T ss_dssp EECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHH
T ss_pred EEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHH
Confidence 999999999999999999996 56788655442 56899999999999999999 899999998765 21111
Q ss_pred --CCCCCccccccChhH------HHHHHHhcCCC----CCCC---CCCCC-CChHHHHHHHHHHHHHcCCCCCCC---Cc
Q 041899 357 --EDNTVPEIQRTNLAN------VILILKNLGID----DLLN---FDFLD-SPPQELLRKALELLYALGALNQVG---EL 417 (650)
Q Consensus 357 --~~~~~pei~r~~l~~------~~L~l~~~~~~----~~~~---~~~~~-~p~~~~i~~a~~~L~~~g~l~~~~---~l 417 (650)
.....||+.+++|.+ .+|.+..+|.- ++.+ ..|+. +|+...++.|++.|.++|+|+.++ .+
T Consensus 416 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~ 495 (715)
T 2va8_A 416 KKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFAL 495 (715)
T ss_dssp HHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred HHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEee
Confidence 124578888888765 67777777732 2222 24443 455677999999999999998774 79
Q ss_pred cHHHHHhccCCCChHHHHHHHhhccc---cChHHHHHHHHhhhcCCCccccCcchHHHHHHHHh---c-ccCCCCC----
Q 041899 418 TKVGRQMAEFPLDPMLSKMIVASDKF---KCSNEIITIAALLSVGNSVFYRPKNKKFLADNARM---N-FYQGDAG---- 486 (650)
Q Consensus 418 T~lG~~~~~~p~~p~~~~~l~~~~~~---~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~---~-~~~~~~s---- 486 (650)
|++|+.|+++|++|+++++++.+... .|..+++.|+|+.++.+++|++|.+.....+.... . +......
T Consensus 496 t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 575 (715)
T 2va8_A 496 TNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEY 575 (715)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHH
T ss_pred ChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccch
Confidence 99999999999999999999999887 79999999999888777888887765544333211 0 1110111
Q ss_pred ----CHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHH
Q 041899 487 ----DHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCL 531 (650)
Q Consensus 487 ----D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~ 531 (650)
.|+-..-+.++|.....-..+|.+.++....+..+.+....|...
T Consensus 576 ~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a 624 (715)
T 2va8_A 576 SLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYS 624 (715)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence 122233345777665555678888888777776665555444443
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.5e-56 Score=513.38 Aligned_cols=499 Identities=17% Similarity=0.182 Sum_probs=374.9
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH--HhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR--EMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~--~~~~~~g~~vg 87 (650)
.++++|.++++.+.++++++++||||||||+++++++++.. .++++++|++|+|+|+.|+++++.. .+|..++..+|
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G 103 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA-IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTG 103 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHH-HTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECS
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHH-HhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 67999999999999999999999999999999999988763 3467999999999999999999842 23556666777
Q ss_pred eeecccccCCCCceEEEEChHHHHHHHhcCCC-CCCCceEEeccccc-----CCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 88 YSIRFEDCTSEKTVLKYMTDGMVLREMLSDPK-LESYSVLMVDEAHE-----RTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~-l~~~~~iIiDE~He-----r~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+..+.+... ..++|+|+|++++.+.+..++. ++++++|||||+|+ |+...+.++..++ ..++++++|+||
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---~~~~~~~ii~lS 179 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR---RMNKALRVIGLS 179 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH---HHCTTCEEEEEE
T ss_pred CCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH---hcCcCceEEEEC
Confidence 665554433 4789999999999998888775 89999999999996 5544455444444 456789999999
Q ss_pred cCC-ChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHH---------HHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 162 ATL-DAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYID---------AAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 162 AT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
||+ +.+.+++|++ ++++..+++.+|++..+...+...+.+ .....+.+.. .+++++||||+++++++
T Consensus 180 ATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~s~~~~~ 256 (702)
T 2p6r_A 180 ATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECV--AENGGVLVFESTRRGAE 256 (702)
T ss_dssp CCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHH--HTTCCEEEECSSHHHHH
T ss_pred CCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHH--hcCCCEEEEcCCHHHHH
Confidence 999 5899999997 667788888888887654322111100 0122233333 24789999999999999
Q ss_pred HHHHHHHHHHHhhcCCC----------C-----------ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccC
Q 041899 232 TVEEILKERIRKLGTKI----------G-----------ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSL 290 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~----------~-----------~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gi 290 (650)
.++..|.+......... + ...+..+||+|+.++|..+++.|++|.++|||||+++++||
T Consensus 257 ~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gi 336 (702)
T 2p6r_A 257 KTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGV 336 (702)
T ss_dssp HHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSS
T ss_pred HHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccC
Confidence 99999987643210000 0 12467799999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccccccccC--CCCCcccc
Q 041899 291 TIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQEDME--DNTVPEIQ 365 (650)
Q Consensus 291 dip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~~~~--~~~~pei~ 365 (650)
|+|++++||++ ...|| | ...|.|.++|.||+|||||.| +|.||.++++.++...+. ....||+.
T Consensus 337 dip~~~~VI~~----~~~yd---~----~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~ 405 (702)
T 2p6r_A 337 NLPARRVIVRS----LYRFD---G----YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERI 405 (702)
T ss_dssp CCCBSEEEECC----SEEES---S----SEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCC
T ss_pred CCCceEEEEcC----ceeeC---C----CCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCc
Confidence 99999999986 56777 2 256999999999999999999 899999999887543221 24578888
Q ss_pred ccChhH------HHHHHHhcCCC-C---CCCC---CCC----CCChHHHHHHHHHHHHHcCCCCCC--CCccHHHHHhcc
Q 041899 366 RTNLAN------VILILKNLGID-D---LLNF---DFL----DSPPQELLRKALELLYALGALNQV--GELTKVGRQMAE 426 (650)
Q Consensus 366 r~~l~~------~~L~l~~~~~~-~---~~~~---~~~----~~p~~~~i~~a~~~L~~~g~l~~~--~~lT~lG~~~~~ 426 (650)
+++|.+ .++.+...|.. + +.++ .|+ ++|..+.++.|++.|.+.|+|+.+ +.+|++|+.++.
T Consensus 406 ~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~ 485 (702)
T 2p6r_A 406 TSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSR 485 (702)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHH
T ss_pred eeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHH
Confidence 887765 66777777732 1 1111 333 267889999999999999999877 689999999999
Q ss_pred CCCChHHHHHHHhhccc--cChHHHHHHHHhhhcCCCccccCcchHHHHHHH-H--hcc-cCCC-CC-------CHHHHH
Q 041899 427 FPLDPMLSKMIVASDKF--KCSNEIITIAALLSVGNSVFYRPKNKKFLADNA-R--MNF-YQGD-AG-------DHIALL 492 (650)
Q Consensus 427 ~p~~p~~~~~l~~~~~~--~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~-~--~~~-~~~~-~s-------D~~~~l 492 (650)
+|++|+++++++.+... .|..+++.++|+.++.+++++++.+ ....+.. + ..+ ..+. .. .++-..
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 564 (702)
T 2p6r_A 486 LYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTA 564 (702)
T ss_dssp TTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHH
Confidence 99999999999999988 8999999999998887788998877 3222221 1 122 1110 11 233344
Q ss_pred HHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHH
Q 041899 493 NVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQL 528 (650)
Q Consensus 493 ~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql 528 (650)
-+.++|.....-...|.++++...-++.+.+-...+
T Consensus 565 ~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l 600 (702)
T 2p6r_A 565 LCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWL 600 (702)
T ss_dssp HHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHH
Confidence 446777755444567777777665555544443333
No 4
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.4e-55 Score=436.95 Aligned_cols=250 Identities=47% Similarity=0.827 Sum_probs=227.5
Q ss_pred CCCCCC-CCCChHHHHHHHHHHHHHcCCCCCCCCccHHHHHhccCCCChHHHHHHHhhccccChHHHHHHHHhhhcCCCc
Q 041899 384 LLNFDF-LDSPPQELLRKALELLYALGALNQVGELTKVGRQMAEFPLDPMLSKMIVASDKFKCSNEIITIAALLSVGNSV 462 (650)
Q Consensus 384 ~~~~~~-~~~p~~~~i~~a~~~L~~~g~l~~~~~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~~ 462 (650)
...|+| +|||+.+++.+|++.|..+||||++|+||++|+.|++||+||++||||+.|..++|++++++|||+||+ +++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~-~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSV-QNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTS-SCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCC-Ccc
Confidence 356788 999999999999999999999999999999999999999999999999999999999999999999999 679
Q ss_pred cccCcchHHHHHHHHhcccCCCCCCHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHHHHHHHHHHHHHHHHhCCcccCC
Q 041899 463 FYRPKNKKFLADNARMNFYQGDAGDHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKHARDIRDQLTCLVERVGIELTSS 542 (650)
Q Consensus 463 f~~~~~~~~~~~~~~~~~~~~~~sD~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~ 542 (650)
|++|.+++.+++..|.+|... .|||++++|+|++|.+.+.+.+||++||||+++|+++.++|+||.+++++.++...++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~-~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~ 162 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQT-EGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC 162 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBT-TBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCchhHHHHHHHHHHccCC-CChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 999999999999999999874 5999999999999998887889999999999999999999999999999999887777
Q ss_pred cccHHHHHHHHHhcccccceEEccCCCEEEeecCCeEEECCCCCCCCCCCcEEEEeeeccCchhhehhccccCHHHHHhH
Q 041899 543 LCNLEAMKKAIISGFLLHTARLQKNGSYWTVKHPQKVHVHPSSGLAQVPKRWVIYHELVLTTKEYMRQVTELKPEWLFEI 622 (650)
Q Consensus 543 ~~~~~~~~~~~~~g~~~~va~~~~~~~y~~~~~~~~~~ihpsS~l~~~~~~~ivy~e~~~t~k~~i~~~t~i~~~wL~~~ 622 (650)
+.+.+.|++|||+|||+|||+++++|.|+++.+|+.|+|||+|+|++.+|+||||+|++.|+|.|||+||+|+|+||.++
T Consensus 163 ~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ 242 (270)
T 3i4u_A 163 GKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEF 242 (270)
T ss_dssp TTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHHHH
T ss_pred cchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHHHH
Confidence 77788999999999999999999888999999999999999999999899999999999999999999999999999999
Q ss_pred cCccceeeeeccc
Q 041899 623 APHYYMLKDVEDL 635 (650)
Q Consensus 623 ~~~~~~~~~~~~~ 635 (650)
+|++|..++....
T Consensus 243 ap~~~~~~~~~~~ 255 (270)
T 3i4u_A 243 APAFFKVLEVDLQ 255 (270)
T ss_dssp CTTTEECC-----
T ss_pred hHHHhcccccccc
Confidence 9999998877544
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=4.4e-54 Score=496.04 Aligned_cols=533 Identities=17% Similarity=0.152 Sum_probs=368.3
Q ss_pred hcCCCchHHHHHHHHH-HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH--HhCCcc
Q 041899 6 RKTLPIYHYREQVLRA-VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR--EMGVKL 82 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~-l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~--~~~~~~ 82 (650)
++--.++++|.++++. +.++++++++||||||||+++++++++.....+++++|++|+++|+.|+++++++ .+|..+
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v 98 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRV 98 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCE
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEE
Confidence 3445789999999998 8899999999999999999998888866444467999999999999999999952 245555
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCC-CCCCceEEecccc-----cCCccccHHHHHHHHHHhcCCCce
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPK-LESYSVLMVDEAH-----ERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~-l~~~~~iIiDE~H-----er~~~~d~ll~~l~~~~~~~~~~k 156 (650)
+..+| ....+......++|+|+|++++.+.+..++. ++++++|||||+| +|+...+.++..++ ++++
T Consensus 99 ~~~~G-~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------~~~~ 171 (720)
T 2zj8_A 99 AMATG-DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------GKAQ 171 (720)
T ss_dssp EEECS-CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------TTBE
T ss_pred EEecC-CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------cCCe
Confidence 55555 2222222234789999999999988877664 8999999999999 45444444433332 3799
Q ss_pred EEEEccCC-ChHHHHhhhCCCCccccCCcccceeEEEecCCCCch-------HHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 157 LLISSATL-DAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNY-------IDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 157 ii~~SAT~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
+|+||||+ +.+.+.+|++ .+.+..++++.|+...+...+...+ .......+.+.. .+++++||||++++
T Consensus 172 ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~ 248 (720)
T 2zj8_A 172 IIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI--RKKKGALIFVNMRR 248 (720)
T ss_dssp EEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH--HTTCCEEEECSCHH
T ss_pred EEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH--hCCCCEEEEecCHH
Confidence 99999999 7899999996 4456667777777655432111000 111122222322 24789999999999
Q ss_pred HHHHHHHHHHHHHHhhcC------------CC------------CceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCC
Q 041899 229 EIETVEEILKERIRKLGT------------KI------------GELIVCPVYANLPTELQAKIFVPTPDGARKVVLATN 284 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~------------~~------------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~ 284 (650)
+++.++..|.+....... .. -...+.++||+|+.++|..+++.|++|.++|||||+
T Consensus 249 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~ 328 (720)
T 2zj8_A 249 KAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATP 328 (720)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECS
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECc
Confidence 999999999875432000 00 012388999999999999999999999999999999
Q ss_pred CccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCcccccc---ccCC
Q 041899 285 IAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQE---DMED 358 (650)
Q Consensus 285 i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~---~~~~ 358 (650)
++++|||+|++++||+.+ ..|| ..| ..|.|.++|.||+|||||.| +|.||.++++.+... .+..
T Consensus 329 ~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~ 398 (720)
T 2zj8_A 329 TLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIF 398 (720)
T ss_dssp TTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTT
T ss_pred HhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhc
Confidence 999999999999999854 4566 222 24899999999999999998 799999998876322 1233
Q ss_pred CCCcccccc-----ChhHHHHHHHhcCCC----CCCC---CCCC------CCChHHHHHHHHHHHHHcCCCC-CCC---C
Q 041899 359 NTVPEIQRT-----NLANVILILKNLGID----DLLN---FDFL------DSPPQELLRKALELLYALGALN-QVG---E 416 (650)
Q Consensus 359 ~~~pei~r~-----~l~~~~L~l~~~~~~----~~~~---~~~~------~~p~~~~i~~a~~~L~~~g~l~-~~~---~ 416 (650)
...+++... .|...++.+...|.. ++.+ +.|+ ++|..+.+..+++.|.+.|+|+ .++ .
T Consensus 399 ~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~ 478 (720)
T 2zj8_A 399 GKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIR 478 (720)
T ss_dssp SCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEE
T ss_pred CCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEe
Confidence 333333322 355556666666531 1111 1332 3344578999999999999998 655 6
Q ss_pred ccHHHHHhccCCCChHHHHHHHhhccc----cChHHHHHHHHhhhcCCCccccCcchHHHHHHHHh---cc-cC-C-CCC
Q 041899 417 LTKVGRQMAEFPLDPMLSKMIVASDKF----KCSNEIITIAALLSVGNSVFYRPKNKKFLADNARM---NF-YQ-G-DAG 486 (650)
Q Consensus 417 lT~lG~~~~~~p~~p~~~~~l~~~~~~----~c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~~~~---~~-~~-~-~~s 486 (650)
+|++|+.|+++|++|.++++++.+... .|..+++.|+|++++.+++|++|.+.....+.... .+ .. + ..+
T Consensus 479 ~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~ 558 (720)
T 2zj8_A 479 PLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISG 558 (720)
T ss_dssp ECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSC
T ss_pred eChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhcccccccccccccc
Confidence 999999999999999999999999887 89999999999999878899988765544433211 11 00 0 011
Q ss_pred ----------CHHHHHHHHHHHhhcCcchhhHHhhcCChHHHHH----HHHHHHHHHHHHHHhCCcccCCcccHHHHHHH
Q 041899 487 ----------DHIALLNVYNSWKENDYSKQWCYDNFIQFRSMKH----ARDIRDQLTCLVERVGIELTSSLCNLEAMKKA 552 (650)
Q Consensus 487 ----------D~~~~l~~~~~~~~~~~~~~~c~~~~l~~~~l~~----~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~ 552 (650)
.++-..-+.++|.....-...+.++.+....++. +..+-..+.+++...+.... ......+.+.
T Consensus 559 ~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~--~~~l~~l~~r 636 (720)
T 2zj8_A 559 YDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEI--VDYLETLRVR 636 (720)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGG--HHHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHHHHHHHHH
Confidence 1222223346665443333455555554444443 33344444445555544211 1222335566
Q ss_pred HHhccccc
Q 041899 553 IISGFLLH 560 (650)
Q Consensus 553 ~~~g~~~~ 560 (650)
+..|....
T Consensus 637 l~~gv~~e 644 (720)
T 2zj8_A 637 VKYGIREE 644 (720)
T ss_dssp HHHTCCGG
T ss_pred HHcCCCcc
Confidence 66666544
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=4.2e-41 Score=411.68 Aligned_cols=454 Identities=16% Similarity=0.175 Sum_probs=314.7
Q ss_pred chHHHHHHHHHH-HcCCeEEEEcCCCChHHHHHHHHHHhccc----------CCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 11 IYHYREQVLRAV-QENQVVVIVGETGSGKTTQIPQYLHEAGY----------TKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 11 l~~~q~~~l~~l-~~~~~vii~apTGsGKT~~ip~~l~~~~~----------~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
+++.|.++++.+ .++++++|+||||||||..+.+.++.... ..+.+++|++|+|+|+.|+++.+.+.++
T Consensus 80 ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~ 159 (1724)
T 4f92_B 80 LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLA 159 (1724)
T ss_dssp CCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHh
Confidence 778999999975 56889999999999999877777664321 1345899999999999999999987664
Q ss_pred CccCcEeeeeeccc---ccCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccc----cCCccccHHHHHHHHHH
Q 041899 80 VKLGHEVGYSIRFE---DCTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAH----ERTLSTDILLGIFKDLV 149 (650)
Q Consensus 80 ~~~g~~vg~~~~~~---~~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~H----er~~~~d~ll~~l~~~~ 149 (650)
. .|..|+-..+.. ......++|+++||+.+-..+.... .++++++|||||+| +|+...+.++..+.+..
T Consensus 160 ~-~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~ 238 (1724)
T 4f92_B 160 T-YGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNI 238 (1724)
T ss_dssp T-TTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred h-CCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHH
Confidence 3 344444222111 1122457899999998643332221 47889999999999 56555555554443332
Q ss_pred -hcCCCceEEEEccCC-ChHHHHhhhCCCC-----ccccCCcccceeEEEecCCCCchHHH--HH-HHHHHH-HhcCCCC
Q 041899 150 -RLRSDLKLLISSATL-DAEKFSAYFNFAP-----ILRVPGRRYPVEIHYTKAPESNYIDA--AI-VTTLEI-HATQASG 218 (650)
Q Consensus 150 -~~~~~~kii~~SAT~-~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~--~~-~~~~~~-~~~~~~~ 218 (650)
...+++|+|+||||+ |.+.+++|++..+ .+....|+.|++.++........... .. ..+... .....++
T Consensus 239 ~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKN 318 (1724)
T ss_dssp HHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCC
Confidence 356789999999999 8999999997542 23334455666666654443332211 11 112222 2223467
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhhcCC----------------------------CCceEEEeecCCCCHHHHhhhcC
Q 041899 219 DILVFLTGQEEIETVEEILKERIRKLGTK----------------------------IGELIVCPVYANLPTELQAKIFV 270 (650)
Q Consensus 219 ~iLVF~~~~~~i~~~~~~L~~~~~~~~~~----------------------------~~~~~v~~lh~~l~~~~r~~i~~ 270 (650)
++||||++++.++.+++.|.+........ .-...+..+||||+.++|..+++
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999998765322100 00224778999999999999999
Q ss_pred CCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEee
Q 041899 271 PTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLY 347 (650)
Q Consensus 271 ~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~ 347 (650)
.|++|.++|||||++++.|||+|++++||.. ...||+..| ...+.|..+|.||+|||||.| .|.++.+.
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~----~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKG----RWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTT----EEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCC----CcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 9999999999999999999999999999974 567888877 445899999999999999998 69999988
Q ss_pred Ccccccc--ccCCCCCc--cccccChhHHHHHHHhcCC-CCC----------------------CCC--------CCCCC
Q 041899 348 TINSYQE--DMEDNTVP--EIQRTNLANVILILKNLGI-DDL----------------------LNF--------DFLDS 392 (650)
Q Consensus 348 ~~~~~~~--~~~~~~~p--ei~r~~l~~~~L~l~~~~~-~~~----------------------~~~--------~~~~~ 392 (650)
++++... .+.....| .-+...+.+.++....+|. .+. ..+ +.++.
T Consensus 471 ~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~ 550 (1724)
T 4f92_B 471 SHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQ 550 (1724)
T ss_dssp ESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHH
T ss_pred cchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHH
Confidence 7654321 12111111 1122234444444333331 110 000 12222
Q ss_pred ChHHHHHHHHHHHHHcCCCCC---CC--CccHHHHHhccCCCChHHHHHHHhhccccCh-HHHHHHHHhhhcCCCccccC
Q 041899 393 PPQELLRKALELLYALGALNQ---VG--ELTKVGRQMAEFPLDPMLSKMIVASDKFKCS-NEIITIAALLSVGNSVFYRP 466 (650)
Q Consensus 393 p~~~~i~~a~~~L~~~g~l~~---~~--~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c~-~~~l~i~a~ls~~~~~f~~~ 466 (650)
...+.+..++..|.+.|+|.. +| .+|++|+++|+++++|..++.+.......+. .+++.+.|+.++...+.++.
T Consensus 551 ~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~ 630 (1724)
T 4f92_B 551 RRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVRE 630 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCG
T ss_pred HHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCH
Confidence 234567889999999999942 23 4899999999999999999999988776554 46788888877767777776
Q ss_pred cchHHHH
Q 041899 467 KNKKFLA 473 (650)
Q Consensus 467 ~~~~~~~ 473 (650)
.++....
T Consensus 631 ~E~~~l~ 637 (1724)
T 4f92_B 631 EEKLELQ 637 (1724)
T ss_dssp GGHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 7
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.4e-41 Score=415.90 Aligned_cols=451 Identities=14% Similarity=0.110 Sum_probs=317.7
Q ss_pred chHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQ-ENQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
.++.|.++++.+. .+++++|+||||||||+++.++++..... ++++++|++|+|+||.|.++.+.+.++...|..|+.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 6789999999985 56789999999999998888887765433 456899999999999999999998888777777764
Q ss_pred eecccc---cCCCCceEEEEChHHHHHHHh---cCCCCCCCceEEecccc----cCCccccHHHHHHHHHHh-cCCCceE
Q 041899 89 SIRFED---CTSEKTVLKYMTDGMVLREML---SDPKLESYSVLMVDEAH----ERTLSTDILLGIFKDLVR-LRSDLKL 157 (650)
Q Consensus 89 ~~~~~~---~~~~~~~i~~~T~~~Ll~~l~---~~~~l~~~~~iIiDE~H----er~~~~d~ll~~l~~~~~-~~~~~ki 157 (650)
...... ....+++|+++||+.+...+. ....++++++||+||+| +|+...+..+..++.+.. ..+++|+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~ri 1086 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRI 1086 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEE
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceE
Confidence 332211 112457899999998744443 23357899999999999 333333444444444433 4568999
Q ss_pred EEEccCC-ChHHHHhhhCCCC--c--cccCCcccceeEEEecCCCCchHHHH---HHHH-HHHHhcCCCCCEEEEeCCHH
Q 041899 158 LISSATL-DAEKFSAYFNFAP--I--LRVPGRRYPVEIHYTKAPESNYIDAA---IVTT-LEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 158 i~~SAT~-~~~~~~~~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~iLVF~~~~~ 228 (650)
|+||||+ |++.+++|++..+ . +....|+.|++.+............. ...+ ..+....+++++||||+++.
T Consensus 1087 I~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~ 1166 (1724)
T 4f92_B 1087 VALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRK 1166 (1724)
T ss_dssp EEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHH
T ss_pred EEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHH
Confidence 9999999 9999999997543 2 33345566666655433322221111 1111 12223355789999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCC-------------------------CceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeC
Q 041899 229 EIETVEEILKERIRKLGTKI-------------------------GELIVCPVYANLPTELQAKIFVPTPDGARKVVLAT 283 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~-------------------------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT 283 (650)
.++.++..|...+....... -...+..+||||++++|..+++.|++|.++|||||
T Consensus 1167 ~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT 1246 (1724)
T 4f92_B 1167 QTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVAS 1246 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEE
T ss_pred HHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 99999998876553211100 02347889999999999999999999999999999
Q ss_pred CCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccccc--cccCC
Q 041899 284 NIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQ--EDMED 358 (650)
Q Consensus 284 ~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~--~~~~~ 358 (650)
+++++|||+|++++||.+ ...||+..+ ...|.+..+|.||+|||||.| .|.|+.++...... ..+..
T Consensus 1247 ~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~ 1318 (1724)
T 4f92_B 1247 RSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLY 1318 (1724)
T ss_dssp GGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTT
T ss_pred hHHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhC
Confidence 999999999999999974 456776554 445899999999999999998 69999998665432 11211
Q ss_pred CCCcccccc----ChhHHHHHHHhcCC-CCC------CCCCC---------------------CCCChHHHHHHHHHHHH
Q 041899 359 NTVPEIQRT----NLANVILILKNLGI-DDL------LNFDF---------------------LDSPPQELLRKALELLY 406 (650)
Q Consensus 359 ~~~pei~r~----~l~~~~L~l~~~~~-~~~------~~~~~---------------------~~~p~~~~i~~a~~~L~ 406 (650)
.|+...+ .+.+.++.....|. .+. ....| ++..-.+.++.+++.|.
T Consensus 1319 --~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~ 1396 (1724)
T 4f92_B 1319 --EPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLE 1396 (1724)
T ss_dssp --SCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 2222333 34444554444432 110 00011 11123355788999999
Q ss_pred HcCCCC--CCC--CccHHHHHhccCCCChHHHHHHHhhccccC-hHHHHHHHHhhhcCCCccccCcchHH
Q 041899 407 ALGALN--QVG--ELTKVGRQMAEFPLDPMLSKMIVASDKFKC-SNEIITIAALLSVGNSVFYRPKNKKF 471 (650)
Q Consensus 407 ~~g~l~--~~~--~lT~lG~~~~~~p~~p~~~~~l~~~~~~~c-~~~~l~i~a~ls~~~~~f~~~~~~~~ 471 (650)
+.|+|. +++ .+|++|++++.++++|..++++..+....+ ...++.+.+...+.+++.++..+...
T Consensus 1397 ~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~ 1466 (1724)
T 4f92_B 1397 QSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNL 1466 (1724)
T ss_dssp HTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTSGGGTTCCCCTTHHHH
T ss_pred HCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHhcCCcccccccccccHHHH
Confidence 999995 344 369999999999999999999998877665 45677787776666666666655443
No 8
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-40 Score=389.76 Aligned_cols=328 Identities=15% Similarity=0.183 Sum_probs=247.8
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
...++++++|.++++.+.++++++++||||||||+++.++++.. +..+++++|++|+++|+.|+++++.+.++ .
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~-l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-~---- 253 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-D---- 253 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHTS-S----
T ss_pred hCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-HhcCCeEEEEcCcHHHHHHHHHHHHHHhC-C----
Confidence 34567999999999999999999999999999998887777765 34567999999999999999999988876 3
Q ss_pred eeeeecccccCCCCceEEEEChHHHHHHHhcCCC-CCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 86 VGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPK-LESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 86 vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~-l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
+|+ +.++......++|+|+|+++|.+.+..+.. +.++++||||||| +..+.++...+-..+....++.++|+||||+
T Consensus 254 Vgl-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~qvl~lSATi 331 (1108)
T 3l9o_A 254 VGL-MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRYVFLSATI 331 (1108)
T ss_dssp EEE-ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSEEEEEECSC
T ss_pred ccE-EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCceEEEEcCCC
Confidence 443 233444566789999999999998887764 8899999999999 4444444333333344467789999999999
Q ss_pred -ChHHHHhhhCC-----CCccccCCcccceeEEEecCCCC----------ch-----H----------------------
Q 041899 165 -DAEKFSAYFNF-----APILRVPGRRYPVEIHYTKAPES----------NY-----I---------------------- 201 (650)
Q Consensus 165 -~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~----------~~-----~---------------------- 201 (650)
+...+.+|++. ..++..+.+..|++.++...... .+ .
T Consensus 332 pn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 411 (1108)
T 3l9o_A 332 PNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGK 411 (1108)
T ss_dssp SSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------
T ss_pred CCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccc
Confidence 77788888752 34555667777776655432110 00 0
Q ss_pred --------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhc---------------------C
Q 041899 202 --------------DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLG---------------------T 246 (650)
Q Consensus 202 --------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~---------------------~ 246 (650)
...+..++........+++||||+++.+++.++..|....-... .
T Consensus 412 ~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~ 491 (1108)
T 3l9o_A 412 KGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDR 491 (1108)
T ss_dssp -------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTT
T ss_pred cccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhh
Confidence 22333444555555678999999999999999998865311100 0
Q ss_pred CCC---------ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccc
Q 041899 247 KIG---------ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMES 317 (650)
Q Consensus 247 ~~~---------~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~ 317 (650)
..+ ...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||++. ..||+.
T Consensus 492 ~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~----~~~d~~----- 562 (1108)
T 3l9o_A 492 ELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSV----RKWDGQ----- 562 (1108)
T ss_dssp CCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCS----EEESSS-----
T ss_pred hhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecC----cccCcc-----
Confidence 000 11278899999999999999999999999999999999999999999999853 234443
Q ss_pred ceeeecCHHhHHhhccccCCCC---CcEEEEeeCccc
Q 041899 318 LLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINS 351 (650)
Q Consensus 318 l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~ 351 (650)
...|+|..+|+||+|||||.| .|.||.++++..
T Consensus 563 -~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 563 -QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp -CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred -ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 234889999999999999999 899999998763
No 9
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=358.45 Aligned_cols=316 Identities=16% Similarity=0.217 Sum_probs=225.3
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
..+-.+++++|.++++.+.+++++++++|||||||+++.+.+++.... .+.+++|++|+++|+.|+++++.+.. ...
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~ 135 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG-DYM 135 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHG-GGS
T ss_pred HcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHh-ccc
Confidence 345668999999999999999999999999999998887777765332 35589999999999999999887643 333
Q ss_pred CcEeeeeecccc-------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCC
Q 041899 83 GHEVGYSIRFED-------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSD 154 (650)
Q Consensus 83 g~~vg~~~~~~~-------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~ 154 (650)
+..++....... ......+|+++|++.|++.+.... .+.++++||+||+|+ ....++...+...+....++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 136 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE-MLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH-HHHTTTHHHHHHHHTTSCTT
T ss_pred CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH-hhccCcHHHHHHHHHhCCCC
Confidence 333333222211 122567899999999999887765 578899999999994 23333434444444446678
Q ss_pred ceEEEEccCCChHHH---HhhhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 155 LKLLISSATLDAEKF---SAYFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 155 ~kii~~SAT~~~~~~---~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
.++++||||++.+.. ..++.+...+.+.... ..+...+......+.. ...+..+......+++||||++++
T Consensus 215 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~lvf~~~~~ 291 (414)
T 3eiq_A 215 TQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK---LDTLCDLYETLTITQAVIFINTRR 291 (414)
T ss_dssp CEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTH---HHHHHHHHHSSCCSSCEEECSCHH
T ss_pred CeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhH---HHHHHHHHHhCCCCcEEEEeCCHH
Confidence 999999999965432 3344433333322221 2234444444433332 234445555566789999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccccee
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKW 308 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~ 308 (650)
+++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.
T Consensus 292 ~~~~l~~~l~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~------- 355 (414)
T 3eiq_A 292 KVDWLTEKMHAR---------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY------- 355 (414)
T ss_dssp HHHHHHHHHHTT---------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEES-------
T ss_pred HHHHHHHHHHhc---------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEe-------
Confidence 999999999764 6778999999999999999999999999999999999999999999999994
Q ss_pred ccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 309 YNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 309 ~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+.|.|..+|.||+||+||.| +|.||.++++.+.
T Consensus 356 -----------~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 389 (414)
T 3eiq_A 356 -----------DLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDK 389 (414)
T ss_dssp -----------SCCSSTHHHHHHSCCC-------CEEEEECSTHH
T ss_pred -----------CCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHH
Confidence 33789999999999999998 7999999998764
No 10
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3.1e-40 Score=366.40 Aligned_cols=302 Identities=22% Similarity=0.279 Sum_probs=229.9
Q ss_pred HhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 3 QKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 3 ~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
++.|..+|++.+|+++++.+.++++++++||||||||+++++.+++. +.+++|++|+|+||.|+++++++.++..+
T Consensus 210 l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~----g~~vLVl~PTReLA~Qia~~l~~~~g~~v 285 (666)
T 3o8b_A 210 METTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ----GYKVLVLNPSVAATLGFGAYMSKAHGIDP 285 (666)
T ss_dssp HHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT----TCCEEEEESCHHHHHHHHHHHHHHHSCCC
T ss_pred hhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC----CCeEEEEcchHHHHHHHHHHHHHHhCCCe
Confidence 56678899999999999999999999999999999999999988774 45899999999999999999999999888
Q ss_pred CcEeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 83 GHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 83 g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
+..+|+.. .....+|+|+|+|.|++. ....+.++++|||||+|+++...+..+..+...........+++|||
T Consensus 286 g~~vG~~~-----~~~~~~IlV~TPGrLl~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 286 NIRTGVRT-----ITTGAPVTYSTYGKFLAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp EEECSSCE-----ECCCCSEEEEEHHHHHHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred eEEECcEe-----ccCCCCEEEECcHHHHhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 77777543 346689999999998531 12257789999999999887766555555555444444445788999
Q ss_pred CCChHHHHhhhC-CCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH
Q 041899 163 TLDAEKFSAYFN-FAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI 241 (650)
Q Consensus 163 T~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~ 241 (650)
|++.. +. ..+ ...++...+.. ...+..... . .....++++||||+++++++.+++.|++.
T Consensus 359 T~~~~-----i~~~~p------~i~~v~~~~~~--~i~~~~~~~----~-l~~~~~~~vLVFv~Tr~~ae~la~~L~~~- 419 (666)
T 3o8b_A 359 TPPGS-----VTVPHP------NIEEVALSNTG--EIPFYGKAI----P-IEAIRGGRHLIFCHSKKKCDELAAKLSGL- 419 (666)
T ss_dssp SCTTC-----CCCCCT------TEEEEECBSCS--SEEETTEEE----C-GGGSSSSEEEEECSCHHHHHHHHHHHHTT-
T ss_pred CCCcc-----cccCCc------ceEEEeecccc--hhHHHHhhh----h-hhhccCCcEEEEeCCHHHHHHHHHHHHhC-
Confidence 98542 11 011 01111111100 000000000 0 11235789999999999999999999864
Q ss_pred HhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccccee----ccCCCCccc
Q 041899 242 RKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKW----YNPKTGMES 317 (650)
Q Consensus 242 ~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~----~d~~~~~~~ 317 (650)
++.+..+||++++++ ++++..+|||||+++++|||+| |++|||+|+.+... |||..++..
T Consensus 420 --------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~ 483 (666)
T 3o8b_A 420 --------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET 483 (666)
T ss_dssp --------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE
T ss_pred --------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccccc
Confidence 678999999998764 3456679999999999999997 99999999988775 667777765
Q ss_pred ceeeecCHHhHHhhccccCCCCCcEEEEeeCcccc
Q 041899 318 LLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 318 l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 352 (650)
...|.|.++|+||+||+||.++|. |.||++.+.
T Consensus 484 -~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 484 -TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp -EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred -ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 468999999999999999966899 999988765
No 11
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.1e-38 Score=339.32 Aligned_cols=320 Identities=19% Similarity=0.219 Sum_probs=233.7
Q ss_pred cCCCchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 7 KTLPIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+-..++++|.++++.+.++ +++++++|||||||+++...++..... .+++++|++|+++|+.|+++++.+ ++...
T Consensus 24 ~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~ 102 (395)
T 3pey_A 24 KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQE-MGKFT 102 (395)
T ss_dssp TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHH-HTTTS
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHH-Hhccc
Confidence 4456899999999999987 899999999999998877777665332 345899999999999999998865 44333
Q ss_pred CcEeeeee--cccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 83 GHEVGYSI--RFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 83 g~~vg~~~--~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
+..++... ..........+|+++|++.+++.+.... .+.++++||+||+|.......+...+........++.++++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~ 182 (395)
T 3pey_A 103 KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVL 182 (395)
T ss_dssp CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEE
T ss_pred CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEE
Confidence 33333222 2222333467899999999998886654 58899999999999543333444444433334567899999
Q ss_pred EccCCCh--HHHHh-hhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 041899 160 SSATLDA--EKFSA-YFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETV 233 (650)
Q Consensus 160 ~SAT~~~--~~~~~-~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~ 233 (650)
||||++. ..+.. ++.....+...... ..+...+....... .....+..+......+++||||+++++++.+
T Consensus 183 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l 259 (395)
T 3pey_A 183 FSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEA---DKFDVLTELYGLMTIGSSIIFVATKKTANVL 259 (395)
T ss_dssp EESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHH---HHHHHHHHHHTTTTSSEEEEECSCHHHHHHH
T ss_pred EEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchH---HHHHHHHHHHHhccCCCEEEEeCCHHHHHHH
Confidence 9999954 33333 33333223222221 23444444433222 2233344444555678999999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCC
Q 041899 234 EEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKT 313 (650)
Q Consensus 234 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~ 313 (650)
++.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+..+
T Consensus 260 ~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~-------- 322 (395)
T 3pey_A 260 YGKLKSE---------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPT-------- 322 (395)
T ss_dssp HHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCB--------
T ss_pred HHHHHhc---------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCC--------
Confidence 9999875 56788999999999999999999999999999999999999999999999954311
Q ss_pred CcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 314 GMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 314 ~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
+...+.|..+|.||+|||||.| +|.|+.+++..+
T Consensus 323 ----~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 323 ----LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp ----CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ----CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 0112359999999999999998 599999998644
No 12
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.7e-38 Score=342.18 Aligned_cols=321 Identities=15% Similarity=0.161 Sum_probs=233.9
Q ss_pred cCCCchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 7 KTLPIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+--.++++|.++++.+.++ +++++++|||||||.++...+++.... .+++++|++|+++|+.|+++++.+......
T Consensus 44 g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 44 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 3446899999999999887 999999999999998776666654332 234899999999999999988876544333
Q ss_pred CcEeeeeeccccc---CCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 83 GHEVGYSIRFEDC---TSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 83 g~~vg~~~~~~~~---~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
+..+++....... .....+|+++|++.+++.+.... .+.++++||+||+|.......+............++.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (412)
T 3fht_A 124 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQM 203 (412)
T ss_dssp TCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEE
T ss_pred cceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceE
Confidence 4455554443322 23456899999999999886644 468899999999994322223333333333335678999
Q ss_pred EEEccCCChH--HH-HhhhCCCCccccCCc---ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 158 LISSATLDAE--KF-SAYFNFAPILRVPGR---RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 158 i~~SAT~~~~--~~-~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
++||||++.. .+ ..++.....+.+... ...+...+......+. ....+..+......+++||||+++++++
T Consensus 204 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQALCNLYGAITIAQAMIFCHTRKTAS 280 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHH---HHHHHHHHHHHHSSSEEEEECSSHHHHH
T ss_pred EEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHH---HHHHHHHHHhhcCCCCEEEEeCCHHHHH
Confidence 9999999653 33 344444333333221 2234444444433222 2333444444455789999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 232 TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
.+++.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+....+.
T Consensus 281 ~l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~--- 348 (412)
T 3fht_A 281 WLAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD--- 348 (412)
T ss_dssp HHHHHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS---
T ss_pred HHHHHHHhC---------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC---
Confidence 999999875 66788999999999999999999999999999999999999999999999955421111
Q ss_pred CCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
.+.|..+|.||+||+||.| +|.|+.+++..+
T Consensus 349 ---------~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 349 ---------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp ---------SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred ---------CCcchheeecccCcccCCCCCceEEEEEcChh
Confidence 0268899999999999988 599999998654
No 13
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.8e-40 Score=386.43 Aligned_cols=374 Identities=17% Similarity=0.217 Sum_probs=256.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHh-CCccCcEe
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREM-GVKLGHEV 86 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~-~~~~g~~v 86 (650)
.++++++|.++++.+.++++++++||||||||+.+...+... ...+++++|++|+++|+.|+++++.+.+ +..++...
T Consensus 37 ~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~-~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~ 115 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMA-HRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLIT 115 (997)
T ss_dssp SSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHH-HHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEEC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHH-HhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 356899999999999999999999999999996543333332 3356789999999999999999998765 33333333
Q ss_pred eeeecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC-
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL- 164 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~- 164 (650)
| +......++|+|+|+++|.+.+.... .+.++++|||||+| +..+.++...+...+....++.++|+||||+
T Consensus 116 G-----~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~ 189 (997)
T 4a4z_A 116 G-----DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFILLSATVP 189 (997)
T ss_dssp S-----SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT
T ss_pred C-----CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEEEEcCCCC
Confidence 2 23344668999999999998887655 57899999999999 4333333222333333466789999999999
Q ss_pred ChHHHHhhhCC-----CCccccCCcccceeEEEecCC--------CCch-------------------------------
Q 041899 165 DAEKFSAYFNF-----APILRVPGRRYPVEIHYTKAP--------ESNY------------------------------- 200 (650)
Q Consensus 165 ~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~--------~~~~------------------------------- 200 (650)
+...|.+|++. ..++..+.+..|+.+++.... ...+
T Consensus 190 n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (997)
T 4a4z_A 190 NTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGS 269 (997)
T ss_dssp THHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------
T ss_pred ChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccc
Confidence 88899999962 335667788888876653210 0000
Q ss_pred --------------------------------------------------HHHHHHHHHHHHhcCCCCCEEEEeCCHHHH
Q 041899 201 --------------------------------------------------IDAAIVTTLEIHATQASGDILVFLTGQEEI 230 (650)
Q Consensus 201 --------------------------------------------------~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i 230 (650)
....+..++........+++||||++++++
T Consensus 270 ~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~ 349 (997)
T 4a4z_A 270 TARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRC 349 (997)
T ss_dssp -----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHH
Confidence 001123344445555568999999999999
Q ss_pred HHHHHHHHHH--------------HHhhcCCC----------------CceEEEeecCCCCHHHHhhhcCCCCCCCcEEE
Q 041899 231 ETVEEILKER--------------IRKLGTKI----------------GELIVCPVYANLPTELQAKIFVPTPDGARKVV 280 (650)
Q Consensus 231 ~~~~~~L~~~--------------~~~~~~~~----------------~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kil 280 (650)
+.++..|.+. ........ -...+..+||+|++.+|..+++.|++|.++||
T Consensus 350 e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVL 429 (997)
T 4a4z_A 350 EEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVL 429 (997)
T ss_dssp HHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEE
Confidence 9999888431 00000000 01247889999999999999999999999999
Q ss_pred EeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccccccc-c
Q 041899 281 LATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQED-M 356 (650)
Q Consensus 281 vaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~~~-~ 356 (650)
|||+++++|||+|++.+|+ .+. ..||+. ...|.|..+|.||+|||||.| .|.||.++..+..... +
T Consensus 430 vAT~~~a~GIDiP~~~VVi-~~~---~k~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~ 499 (997)
T 4a4z_A 430 FATETFAMGLNLPTRTVIF-SSI---RKHDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATF 499 (997)
T ss_dssp EECTHHHHSCCCCCSEEEE-SCS---EEEETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHH
T ss_pred EEchHhhCCCCCCCceEEE-ecc---ccccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHH
Confidence 9999999999999955555 443 335553 456899999999999999988 7999999853222111 1
Q ss_pred C--CCCCcccccc------ChhHHHHHHHhcCCCCCCCCCCCCCChHHHH
Q 041899 357 E--DNTVPEIQRT------NLANVILILKNLGIDDLLNFDFLDSPPQELL 398 (650)
Q Consensus 357 ~--~~~~pei~r~------~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i 398 (650)
. ....|+.+++ ++...+|++...++.++..+.|.+.+....+
T Consensus 500 ~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~ 549 (997)
T 4a4z_A 500 KEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQ 549 (997)
T ss_dssp HHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHH
T ss_pred HHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhh
Confidence 1 1123444444 2333333444444444555555554444433
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.2e-37 Score=334.47 Aligned_cols=309 Identities=17% Similarity=0.184 Sum_probs=229.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++++|||||||+++...++..... .+.++++++|+++|+.|+++++.+.. ...+..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLG-KHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT-TTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHh-cccCceEE
Confidence 4899999999999999999999999999997766666654322 34589999999999999998886643 33333333
Q ss_pred eeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEE
Q 041899 88 YSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLI 159 (650)
Q Consensus 88 ~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~ 159 (650)
...... .......+|+++|++.+++.+.... .+.++++||+||+| +....++ ...+..+.. ..++.++++
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH-~~~~~~~-~~~~~~i~~~~~~~~~~i~ 199 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD-KMLSRDF-KTIIEQILSFLPPTHQSLL 199 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH-HHSSHHH-HHHHHHHHTTSCSSCEEEE
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch-Hhhhhch-HHHHHHHHHhCCcCceEEE
Confidence 222111 1123567899999999988776654 68899999999999 3333333 333444443 446789999
Q ss_pred EccCCChH---HHHhhhCCCCccccCCc--ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 041899 160 SSATLDAE---KFSAYFNFAPILRVPGR--RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVE 234 (650)
Q Consensus 160 ~SAT~~~~---~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~ 234 (650)
||||++.. .+..++.....+..... ...+..++......+... .+..+......+++||||+++++++.++
T Consensus 200 lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~~~~~~~~~~lVf~~~~~~~~~l~ 275 (400)
T 1s2m_A 200 FSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLH----CLNTLFSKLQINQAIIFCNSTNRVELLA 275 (400)
T ss_dssp EESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSSHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHH----HHHHHHhhcCCCcEEEEEecHHHHHHHH
Confidence 99999643 33444443322222211 123444444433333322 2233333445789999999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCC
Q 041899 235 EILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTG 314 (650)
Q Consensus 235 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~ 314 (650)
+.|.+. ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+.
T Consensus 276 ~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~------------- 333 (400)
T 1s2m_A 276 KKITDL---------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINF------------- 333 (400)
T ss_dssp HHHHHH---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEES-------------
T ss_pred HHHHhc---------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEe-------------
Confidence 999876 6778899999999999999999999999999999999999999999999983
Q ss_pred cccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 315 MESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 315 ~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+.|.|..+|.||+||+||.| +|.|+.++++++.
T Consensus 334 -----~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~ 367 (400)
T 1s2m_A 334 -----DFPKTAETYLHRIGRSGRFGHLGLAINLINWNDR 367 (400)
T ss_dssp -----SCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGH
T ss_pred -----CCCCCHHHHHHhcchhcCCCCCceEEEEeccchH
Confidence 34789999999999999997 7999999998765
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1e-37 Score=338.33 Aligned_cols=308 Identities=19% Similarity=0.251 Sum_probs=224.3
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-------CCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-------TKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-------~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
-..+++|.++++.+.++++++++||||||||..+...++.... ..+.+++|++|+|+|+.|+++.+.+.. ..
T Consensus 77 ~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~-~~ 155 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FE 155 (434)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT-TT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh-cc
Confidence 3478999999999999999999999999999654444333211 124589999999999999998886643 22
Q ss_pred cCcEeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHh--cC
Q 041899 82 LGHEVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVR--LR 152 (650)
Q Consensus 82 ~g~~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~--~~ 152 (650)
.+..++...... .......+|+++|++.|++.+.... .+.++++||+|||| +..+..+...+.+.+.. .+
T Consensus 156 ~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah-~~~~~gf~~~~~~i~~~~~~~ 234 (434)
T 2db3_A 156 SYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD-RMLDMGFSEDMRRIMTHVTMR 234 (434)
T ss_dssp SSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH-HHTSTTTHHHHHHHHHCTTSC
T ss_pred CCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh-hhhccCcHHHHHHHHHhcCCC
Confidence 222222111111 1123467899999999999887654 58899999999999 44444443333333222 35
Q ss_pred CCceEEEEccCCChH--HHHh-hhCCCCccccC---CcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCC
Q 041899 153 SDLKLLISSATLDAE--KFSA-YFNFAPILRVP---GRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTG 226 (650)
Q Consensus 153 ~~~kii~~SAT~~~~--~~~~-~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~ 226 (650)
++.+++++|||++.+ .+.. ++.+...+.+. .....+...+......+... .+.++.... .+++||||++
T Consensus 235 ~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~----~l~~~l~~~-~~~~lVF~~t 309 (434)
T 2db3_A 235 PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRS----KLIEILSEQ-ADGTIVFVET 309 (434)
T ss_dssp SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHH----HHHHHHHHC-CTTEEEECSS
T ss_pred CCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHH----HHHHHHHhC-CCCEEEEEeC
Confidence 788999999999543 3333 44332222221 22234555555444333332 233333333 3459999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 227 QEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 227 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
+++++.+++.|.+. ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 310 ~~~a~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~------ 374 (434)
T 2db3_A 310 KRGADFLASFLSEK---------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN------ 374 (434)
T ss_dssp HHHHHHHHHHHHHT---------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE------
T ss_pred cHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE------
Confidence 99999999999874 677899999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
++.|.+..+|.||+||+||.| .|.++.+++++
T Consensus 375 ------------~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 375 ------------YDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp ------------SSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred ------------ECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 344889999999999999998 79999999854
No 16
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.5e-39 Score=349.90 Aligned_cols=294 Identities=18% Similarity=0.227 Sum_probs=213.7
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccc-cCC
Q 041899 19 LRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFED-CTS 97 (650)
Q Consensus 19 l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~-~~~ 97 (650)
.+.+.++++++++||||||||+++.+.+++.....+.+++|++|+|+|+.|+++++. |..+++...... ...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~~t 87 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQREHQ 87 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC--------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccCCC
Confidence 445778999999999999999776555554434456799999999999999998874 333444333222 123
Q ss_pred CCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCC
Q 041899 98 EKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAP 177 (650)
Q Consensus 98 ~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~ 177 (650)
+...+.++|.+.+.+.+..++.+.++++|||||||+++...++...++..... .++.++|+||||++.+. ..+..
T Consensus 88 ~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~-~~~~~--- 162 (459)
T 2z83_A 88 GNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTT-DPFPD--- 162 (459)
T ss_dssp CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCC-CSSCC---
T ss_pred CCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcch-hhhcc---
Confidence 55678899999999999999999999999999999887766777776665443 46899999999996431 11111
Q ss_pred ccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeec
Q 041899 178 ILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVY 257 (650)
Q Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh 257 (650)
...|+.......+...+.. .. .... ..++++||||+++++++.+++.|.+. ++.+..+|
T Consensus 163 ------~~~pi~~~~~~~~~~~~~~-~~----~~l~-~~~~~~LVF~~s~~~~~~l~~~L~~~---------g~~v~~lh 221 (459)
T 2z83_A 163 ------SNAPIHDLQDEIPDRAWSS-GY----EWIT-EYAGKTVWFVASVKMGNEIAMCLQRA---------GKKVIQLN 221 (459)
T ss_dssp ------CSSCEEEEECCCCSSCCSS-CC----HHHH-HCCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEEES
T ss_pred ------CCCCeEEecccCCcchhHH-HH----HHHH-hcCCCEEEEeCChHHHHHHHHHHHhc---------CCcEEecC
Confidence 1122222111111111100 00 1111 12789999999999999999999875 67788999
Q ss_pred CCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceecc--CCCCcccceeeecCHHhHHhhcccc
Q 041899 258 ANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYN--PKTGMESLLVYPISKASAMQRAGRS 335 (650)
Q Consensus 258 ~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d--~~~~~~~l~~~~~s~~~~~Qr~GRa 335 (650)
|. +|.++++.|++|+++|||||+++++|+|+|+ ++|||+|..+.+.|+ ....+..+++.|.|.++|.||+|||
T Consensus 222 ~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRa 296 (459)
T 2z83_A 222 RK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRV 296 (459)
T ss_dssp TT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTS
T ss_pred HH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhcccc
Confidence 85 6888999999999999999999999999999 999999988888765 3333444467999999999999999
Q ss_pred CCCC--CcEEEEeeCcc
Q 041899 336 GRTG--PGKCFRLYTIN 350 (650)
Q Consensus 336 GR~~--~G~~~~l~~~~ 350 (650)
||.| +|.||.+++..
T Consensus 297 GR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 297 GRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCCTTCCCEEEEECSCC
T ss_pred CCCCCCCCeEEEEEccc
Confidence 9998 89999999875
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.3e-38 Score=331.63 Aligned_cols=311 Identities=20% Similarity=0.247 Sum_probs=233.1
Q ss_pred cCCCchHHHHHHHHHHHcC-CeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRAVQEN-QVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
.--.++++|.++++.+.++ +++++.+|||||||+++...++..... ++.++++++|+++|+.|+++++.+..+.. +.
T Consensus 25 g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 103 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK-NL 103 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CC
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 3446899999999998877 799999999999998877766655332 35589999999999999999998876532 22
Q ss_pred Eeeeeecccc-----cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 85 EVGYSIRFED-----CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 85 ~vg~~~~~~~-----~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
.++....... ......+|+++|++.+.+.+.... .+.++++||+||+|.. ....+...+.+.+....++.+++
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~~~~~~~~~~~~i 182 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM-LNMGFIKDVEKILNACNKDKRIL 182 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHH-HTTTTHHHHHHHHHTSCSSCEEE
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHh-hhhchHHHHHHHHHhCCCCceEE
Confidence 2221111111 111257899999999998887654 5789999999999942 22333333333333456789999
Q ss_pred EEccCCChH---HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHH
Q 041899 159 ISSATLDAE---KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEE 235 (650)
Q Consensus 159 ~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~ 235 (650)
+||||++.+ .+..++++...+... ....+...+......+.... +..+.. ..++++||||+++++++.+++
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----l~~~l~-~~~~~~lvf~~~~~~~~~l~~ 256 (367)
T 1hv8_A 183 LFSATMPREILNLAKKYMGDYSFIKAK-INANIEQSYVEVNENERFEA----LCRLLK-NKEFYGLVFCKTKRDTKELAS 256 (367)
T ss_dssp EECSSCCHHHHHHHHHHCCSEEEEECC-SSSSSEEEEEECCGGGHHHH----HHHHHC-STTCCEEEECSSHHHHHHHHH
T ss_pred EEeeccCHHHHHHHHHHcCCCeEEEec-CCCCceEEEEEeChHHHHHH----HHHHHh-cCCCcEEEEECCHHHHHHHHH
Confidence 999999654 345566543333322 22245555555444444332 223322 457899999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCc
Q 041899 236 ILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGM 315 (650)
Q Consensus 236 ~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~ 315 (650)
.|.+. +..+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.+
T Consensus 257 ~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~------------- 314 (367)
T 1hv8_A 257 MLRDI---------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYH------------- 314 (367)
T ss_dssp HHHHT---------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESS-------------
T ss_pred HHHhc---------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEec-------------
Confidence 99874 67788999999999999999999999999999999999999999999999843
Q ss_pred ccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 316 ESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 316 ~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
.|.|..+|.||+||+||.| +|.|+.++++.++
T Consensus 315 -----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 347 (367)
T 1hv8_A 315 -----LPQNPESYMHRIGRTGRAGKKGKAISIINRREY 347 (367)
T ss_dssp -----CCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSH
T ss_pred -----CCCCHHHhhhcccccccCCCccEEEEEEcHHHH
Confidence 3789999999999999998 8999999987765
No 18
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=4.3e-39 Score=350.14 Aligned_cols=293 Identities=17% Similarity=0.219 Sum_probs=216.7
Q ss_pred HHHHHHcC-CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccc-c
Q 041899 18 VLRAVQEN-QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFED-C 95 (650)
Q Consensus 18 ~l~~l~~~-~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~-~ 95 (650)
+++.+.++ ++++++||||||||+++...++......+.+++|++|+|+|+.|+++.+. |..++|...... .
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~ 83 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR-------GLPIRYQTPAVKSD 83 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEECCTTCSCC
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc-------Cceeeeeecccccc
Confidence 56665554 55599999999999753333333323456799999999999999997762 344566554442 3
Q ss_pred CCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCC
Q 041899 96 TSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNF 175 (650)
Q Consensus 96 ~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~ 175 (650)
....+.+.++|++.+.+.+..++.+.++++|||||+|+++...+....++... ...++.++++||||++.+....++++
T Consensus 84 ~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~ 162 (451)
T 2jlq_A 84 HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSN 162 (451)
T ss_dssp CCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCS
T ss_pred CCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCC
Confidence 34567899999999999999999999999999999997755555555444332 24568999999999966444334333
Q ss_pred CCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEe
Q 041899 176 APILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCP 255 (650)
Q Consensus 176 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~ 255 (650)
.+++.+. +..| ...+.. ...... ...+++||||+++++++.+++.|.+. ++.+..
T Consensus 163 ~~~~~~~-~~~p---------~~~~~~-----~~~~l~-~~~~~~lVF~~s~~~a~~l~~~L~~~---------g~~~~~ 217 (451)
T 2jlq_A 163 SPIEDIE-REIP---------ERSWNT-----GFDWIT-DYQGKTVWFVPSIKAGNDIANCLRKS---------GKRVIQ 217 (451)
T ss_dssp SCEEEEE-CCCC---------SSCCSS-----SCHHHH-HCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEE
T ss_pred CceEecC-ccCC---------chhhHH-----HHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHc---------CCeEEE
Confidence 3333222 1111 111100 001111 23679999999999999999999764 577889
Q ss_pred ecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccccee---eecCHHhHHhhc
Q 041899 256 VYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLV---YPISKASAMQRA 332 (650)
Q Consensus 256 lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~---~~~s~~~~~Qr~ 332 (650)
+||.+ +.++++.|++|+.+|||||+++++|+|+|+ ++|||+|+.+.+.|| ..+...+.. .|.|.++|.||+
T Consensus 218 lh~~~----~~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~ 291 (451)
T 2jlq_A 218 LSRKT----FDTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRR 291 (451)
T ss_dssp ECTTT----HHHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHH
T ss_pred CCHHH----HHHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhc
Confidence 99976 457889999999999999999999999999 999999999999998 556666654 899999999999
Q ss_pred cccCCCC--CcEEEEeeCc
Q 041899 333 GRSGRTG--PGKCFRLYTI 349 (650)
Q Consensus 333 GRaGR~~--~G~~~~l~~~ 349 (650)
|||||.| +|.||.++..
T Consensus 292 GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 292 GRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp TTSSCCTTCCCEEEEECSC
T ss_pred cccCCCCCCCccEEEEeCC
Confidence 9999999 7899887653
No 19
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-38 Score=367.64 Aligned_cols=325 Identities=16% Similarity=0.196 Sum_probs=238.4
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
..+++++|.++++.+.++++++|+||||||||+++...+... +..+++++|++|+++|+.|+++++.+.++ .+|...|
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~-l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vglltG 161 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS-LKNKQRVIYTSPIKALSNQKYRELLAEFG-DVGLMTG 161 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHH-HHTTCEEEEEESSHHHHHHHHHHHHHHHS-CEEEECS
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHH-hccCCeEEEECChHHHHHHHHHHHHHHhC-CEEEEeC
Confidence 456999999999999999999999999999997765555543 34567999999999999999999998887 4443333
Q ss_pred eeecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC-C
Q 041899 88 YSIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL-D 165 (650)
Q Consensus 88 ~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~-~ 165 (650)
+.......+|+|+|+++|.+.+.... .+.++++|||||+|. ..+.+....+-..+....++.++|+||||+ +
T Consensus 162 -----d~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~-l~d~~rg~~~e~il~~l~~~~~il~LSATi~n 235 (1010)
T 2xgj_A 162 -----DITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHY-MRDKERGVVWEETIILLPDKVRYVFLSATIPN 235 (1010)
T ss_dssp -----SCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGG-GGCTTTHHHHHHHHHHSCTTCEEEEEECCCTT
T ss_pred -----CCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhh-hcccchhHHHHHHHHhcCCCCeEEEEcCCCCC
Confidence 33344567899999999988776654 689999999999993 222211111111222356789999999999 7
Q ss_pred hHHHHhhhC-----CCCccccCCcccceeEEEecCC----------CCch-----H------------------------
Q 041899 166 AEKFSAYFN-----FAPILRVPGRRYPVEIHYTKAP----------ESNY-----I------------------------ 201 (650)
Q Consensus 166 ~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~----------~~~~-----~------------------------ 201 (650)
...+++|++ ...++..+.+..|++.++...+ ...+ .
T Consensus 236 ~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 315 (1010)
T 2xgj_A 236 AMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 315 (1010)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccc
Confidence 888999875 2344555677777776654321 0000 0
Q ss_pred ------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHH------------------HhhcCCCC--
Q 041899 202 ------------DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERI------------------RKLGTKIG-- 249 (650)
Q Consensus 202 ------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~------------------~~~~~~~~-- 249 (650)
...+..++........+++|||++++..++.++..|.... ..+.....
T Consensus 316 ~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 395 (1010)
T 2xgj_A 316 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 395 (1010)
T ss_dssp -------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTC
T ss_pred cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcc
Confidence 1112223333334445699999999999999998885410 00000000
Q ss_pred ----------ceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccce
Q 041899 250 ----------ELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLL 319 (650)
Q Consensus 250 ----------~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~ 319 (650)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+. ...||...
T Consensus 396 ~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------ 465 (1010)
T 2xgj_A 396 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------ 465 (1010)
T ss_dssp HHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------
T ss_pred hhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCcC------
Confidence 1237889999999999999999999999999999999999999999999984 34455432
Q ss_pred eeecCHHhHHhhccccCCCC---CcEEEEeeCcc
Q 041899 320 VYPISKASAMQRAGRSGRTG---PGKCFRLYTIN 350 (650)
Q Consensus 320 ~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~ 350 (650)
..|.|..+|.||+|||||.| .|.||.++++.
T Consensus 466 ~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 466 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 34889999999999999999 49999999865
No 20
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2e-37 Score=333.92 Aligned_cols=311 Identities=15% Similarity=0.232 Sum_probs=229.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++++|||||||.++...++.... ..+.+++|++|+++|+.|+++.+.+ ++...+..++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeEEE
Confidence 488999999999999999999999999999777766665432 2356999999999999999998865 4444444444
Q ss_pred eeeccccc------CCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEE
Q 041899 88 YSIRFEDC------TSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLIS 160 (650)
Q Consensus 88 ~~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~ 160 (650)
........ .....+|+++|++.|...+.... .+.++++||+||+|. .....+...+.+.+....++.++++|
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~-~~~~~~~~~~~~i~~~~~~~~~~i~~ 216 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE-MLNKGFKEQIYDVYRYLPPATQVVLI 216 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HTSTTTHHHHHHHHTTSCTTCEEEEE
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH-HHhhhhHHHHHHHHHhCccCceEEEE
Confidence 32222111 11346899999999998887654 578899999999993 33333333333333335578899999
Q ss_pred ccCCChHH---HHhhhCCCCccccCCc---ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHH
Q 041899 161 SATLDAEK---FSAYFNFAPILRVPGR---RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVE 234 (650)
Q Consensus 161 SAT~~~~~---~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~ 234 (650)
|||++.+. ...++.+...+.+... ...+...+......+..... +..+......+++||||+++++++.++
T Consensus 217 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~~~~~~~~~~~lVf~~~~~~~~~l~ 293 (410)
T 2j0s_A 217 SATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDT---LCDLYDTLTITQAVIFCNTKRKVDWLT 293 (410)
T ss_dssp ESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHH---HHHHHHHHTSSEEEEECSSHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHH---HHHHHHhcCCCcEEEEEcCHHHHHHHH
Confidence 99996542 2234433222222211 12344445444433333322 233333344679999999999999999
Q ss_pred HHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCC
Q 041899 235 EILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTG 314 (650)
Q Consensus 235 ~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~ 314 (650)
+.|.+. ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+.
T Consensus 294 ~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~------------- 351 (410)
T 2j0s_A 294 EKMREA---------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY------------- 351 (410)
T ss_dssp HHHHHT---------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEES-------------
T ss_pred HHHHhC---------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEE-------------
Confidence 999874 6778899999999999999999999999999999999999999999999993
Q ss_pred cccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 315 MESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 315 ~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+.|.+..+|.||+||+||.| +|.|+.++++.+.
T Consensus 352 -----~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 352 -----DLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp -----SCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred -----CCCCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 34789999999999999997 7999999987764
No 21
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.9e-38 Score=351.08 Aligned_cols=307 Identities=16% Similarity=0.165 Sum_probs=222.7
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHH--HHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTT--QIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++.+|||+|||. ++|.+. .+++++|++|+++|+.|+++.+.+ +|..++...|
T Consensus 44 ~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l~~ 116 (591)
T 2v1x_A 44 KFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQ-LGISATMLNA 116 (591)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHH-HTCCEEECCS
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh-cCCcEEEEeC
Confidence 4678999999999999999999999999995 444432 256899999999999999998866 4654433222
Q ss_pred eeecccc--------cCCCCceEEEEChHHHH------HHHhcCCCCCCCceEEecccccCCc-----cccHHHHHHHHH
Q 041899 88 YSIRFED--------CTSEKTVLKYMTDGMVL------REMLSDPKLESYSVLMVDEAHERTL-----STDILLGIFKDL 148 (650)
Q Consensus 88 ~~~~~~~--------~~~~~~~i~~~T~~~Ll------~~l~~~~~l~~~~~iIiDE~Her~~-----~~d~ll~~l~~~ 148 (650)
.....+. ......+|+|+||+.|. +.+.....+.++++|||||||..+. ..++ ..+..+
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~--~~l~~l 194 (591)
T 2v1x_A 117 SSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY--KALGIL 194 (591)
T ss_dssp SCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG--GGGGHH
T ss_pred CCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH--HHHHHH
Confidence 1111110 02457899999999774 2332323467899999999995332 2222 122233
Q ss_pred HhcCCCceEEEEccCCChH---HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhc-CCCCCEEEEe
Q 041899 149 VRLRSDLKLLISSATLDAE---KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHAT-QASGDILVFL 224 (650)
Q Consensus 149 ~~~~~~~kii~~SAT~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iLVF~ 224 (650)
....++.++++||||++.. .+.++++......+........+.|............+..+.+.... .+++++||||
T Consensus 195 ~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~ 274 (591)
T 2v1x_A 195 KRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYC 274 (591)
T ss_dssp HHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEEC
T ss_pred HHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEe
Confidence 4456789999999999764 55666654322222111111122222211122223334444454432 3568999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcc
Q 041899 225 TGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYS 304 (650)
Q Consensus 225 ~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~ 304 (650)
+++++++.+++.|.+. ++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|+|++||+.
T Consensus 275 ~sr~~~e~la~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~--- 342 (591)
T 2v1x_A 275 FSQKDSEQVTVSLQNL---------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHH--- 342 (591)
T ss_dssp SSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEES---
T ss_pred CcHHHHHHHHHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEe---
Confidence 9999999999999875 6789999999999999999999999999999999999999999999999994
Q ss_pred cceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 305 KMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 305 k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+.|.|..+|.||+|||||.| +|.|+.+|+..+.
T Consensus 343 ---------------~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~ 376 (591)
T 2v1x_A 343 ---------------SMSKSMENYYQESGRAGRDDMKADCILYYGFGDI 376 (591)
T ss_dssp ---------------SCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred ---------------CCCCCHHHHHHHhccCCcCCCCceEEEEEChHHH
Confidence 44889999999999999998 8999999987765
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.9e-37 Score=327.92 Aligned_cols=311 Identities=14% Similarity=0.139 Sum_probs=228.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++.+|||+|||.++...++.... ..+.+++|++|+++|+.|+++.+.+......+..++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 109 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 489999999999999999999999999999776666554422 224589999999999999999887654322233333
Q ss_pred eeeccccc-------CCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 88 YSIRFEDC-------TSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 88 ~~~~~~~~-------~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
........ .....+|+++|++.+...+.... .+.++++||+||+|......++...+.+.+....++.++++
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~ 189 (391)
T 1xti_A 110 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMM 189 (391)
T ss_dssp EECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEE
T ss_pred EEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEE
Confidence 22211110 11236899999999998876655 58899999999999433223343333333333456889999
Q ss_pred EccCCCh--H-HHHhhhCCCCccccCCc----ccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 041899 160 SSATLDA--E-KFSAYFNFAPILRVPGR----RYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIET 232 (650)
Q Consensus 160 ~SAT~~~--~-~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~ 232 (650)
||||++. . .+..++.....+.+... ...+...+......+... .+..+....+++++||||+++++++.
T Consensus 190 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~l~~~~~~~~lvf~~~~~~~~~ 265 (391)
T 1xti_A 190 FSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIA 265 (391)
T ss_dssp EESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH----HHHHHHHHSCCSEEEEECSCHHHHHH
T ss_pred EEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH----HHHHHHHhcCCCcEEEEeCcHHHHHH
Confidence 9999943 2 34445543332322221 123444454444333332 22333333467899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899 233 VEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK 312 (650)
Q Consensus 233 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~ 312 (650)
+++.|.+. ++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+.
T Consensus 266 l~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~----------- 325 (391)
T 1xti_A 266 LAQLLVEQ---------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNY----------- 325 (391)
T ss_dssp HHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEES-----------
T ss_pred HHHHHHhC---------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEe-----------
Confidence 99999874 6778899999999999999999999999999999999999999999999983
Q ss_pred CCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 313 TGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
+.|.|..+|.||+||+||.| +|.|+.++++.+
T Consensus 326 -------~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 326 -------DMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp -------SCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred -------CCCCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 34789999999999999998 799999998764
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=335.12 Aligned_cols=312 Identities=17% Similarity=0.187 Sum_probs=221.5
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--------------------CCCCeEEEecchHHH
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--------------------TKHGKVGCTQPRRVA 66 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--------------------~~~~~ilv~~P~r~l 66 (650)
+--.++++|.++++.+.++++++++||||||||+.+...++.... ..+.+++|++|+++|
T Consensus 34 ~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 113 (417)
T 2i4i_A 34 RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTREL 113 (417)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHH
T ss_pred CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHH
Confidence 344689999999999999999999999999999654444332211 112479999999999
Q ss_pred HHHHHHHHHHHhCCccCcEeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCcccc
Q 041899 67 AISVAARVSREMGVKLGHEVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTD 139 (650)
Q Consensus 67 a~q~~~~v~~~~~~~~g~~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d 139 (650)
+.|+++++.+... ..+..++...... .......+|+++|++.|.+.+.... .+.++++|||||+|. .....
T Consensus 114 ~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~-~~~~~ 191 (417)
T 2i4i_A 114 AVQIYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADR-MLDMG 191 (417)
T ss_dssp HHHHHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHH-HHHTT
T ss_pred HHHHHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhH-hhccC
Confidence 9999999876442 2222222211111 1123457899999999999887765 588999999999993 22222
Q ss_pred HHHHHHHHHHh---c--CCCceEEEEccCCChH--HHH-hhhCCCCccccCC---cccceeEEEecCCCCchHHHHHHHH
Q 041899 140 ILLGIFKDLVR---L--RSDLKLLISSATLDAE--KFS-AYFNFAPILRVPG---RRYPVEIHYTKAPESNYIDAAIVTT 208 (650)
Q Consensus 140 ~ll~~l~~~~~---~--~~~~kii~~SAT~~~~--~~~-~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~ 208 (650)
+. ..++.+.. . ....++++||||++.+ .+. .++++...+.+.. ....+...+......+... .+
T Consensus 192 ~~-~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~l 266 (417)
T 2i4i_A 192 FE-PQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRS----FL 266 (417)
T ss_dssp CH-HHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGGHHH----HH
T ss_pred cH-HHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHhHHH----HH
Confidence 22 22333333 1 1267899999999543 333 4444322222211 1122344444333333322 22
Q ss_pred HHHHhc-CCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc
Q 041899 209 LEIHAT-QASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAE 287 (650)
Q Consensus 209 ~~~~~~-~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e 287 (650)
..+... ..++++||||+++++++.+++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||++++
T Consensus 267 ~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~---------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 337 (417)
T 2i4i_A 267 LDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAA 337 (417)
T ss_dssp HHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHH
T ss_pred HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC---------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhh
Confidence 233332 34678999999999999999999874 67789999999999999999999999999999999999
Q ss_pred ccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 288 TSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 288 ~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+|+|+|++++||+. +.|.|..+|.||+||+||.| +|.|+.++++.+.
T Consensus 338 ~Gidip~v~~Vi~~------------------~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 338 RGLDISNVKHVINF------------------DLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp TTSCCCCEEEEEES------------------SCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred cCCCcccCCEEEEE------------------cCCCCHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 99999999999994 34789999999999999998 6999999998765
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.9e-38 Score=346.53 Aligned_cols=320 Identities=15% Similarity=0.164 Sum_probs=120.4
Q ss_pred CCCchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 8 TLPIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
--.++++|.++++.+..+ ++++++||||||||.++.+.++...... +.+++|++|+++|+.|+++.+.+......+
T Consensus 112 ~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 345678899999999886 9999999999999988777776653322 238999999999999999888765543333
Q ss_pred cEeeeeecccc---cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 84 HEVGYSIRFED---CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 84 ~~vg~~~~~~~---~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
..+++...... ......+|+++|++.|++.+.... .+.++++|||||+|.......+............++.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i 271 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQML 271 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEE
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEE
Confidence 44444443332 223356899999999999887644 4589999999999943222233333333333356789999
Q ss_pred EEccCCChH--HHHh-hhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHH
Q 041899 159 ISSATLDAE--KFSA-YFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIET 232 (650)
Q Consensus 159 ~~SAT~~~~--~~~~-~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~ 232 (650)
++|||++.+ .+.. ++.....+.+.... ..+...+........ ....+..+......+++||||+++..++.
T Consensus 272 ~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~lvF~~s~~~~~~ 348 (479)
T 3fmp_B 272 LFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDE---KFQALCNLYGAITIAQAMIFCHTRKTASW 348 (479)
T ss_dssp EEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------------------------------
T ss_pred EEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHH---HHHHHHHHHhhccCCceEEEeCcHHHHHH
Confidence 999999654 3333 33332223222211 112222222221111 12223333333456799999999999999
Q ss_pred HHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCC
Q 041899 233 VEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPK 312 (650)
Q Consensus 233 ~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~ 312 (650)
++..|... +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+.++....
T Consensus 349 l~~~L~~~---------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~----- 414 (479)
T 3fmp_B 349 LAAELSKE---------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK----- 414 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhC---------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC-----
Confidence 99999875 6778899999999999999999999999999999999999999999999984431100
Q ss_pred CCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 313 TGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 313 ~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
..+.+..+|.||+|||||.| +|.|+.+++...
T Consensus 415 -------~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 415 -------DGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ----------------------------------------
T ss_pred -------ccCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 01257789999999999988 699999998654
No 25
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.6e-38 Score=353.26 Aligned_cols=304 Identities=17% Similarity=0.205 Sum_probs=228.9
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
++..+|++.+ .++.+.++++++++||||||||+++...+++.....+.+++|++|+|+||.|+++.+. +.
T Consensus 169 ~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 169 ERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred cccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 3778898755 3888999999999999999999765444333323345699999999999999997764 34
Q ss_pred Eeeeeecc-cccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 85 EVGYSIRF-EDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 85 ~vg~~~~~-~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
.++|..+. +....+...+.++|.+.+.+.+..++.+.++++|||||||+++...+..+..+.... .+++.++++||||
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-~~~~~q~il~SAT 317 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-EMGEAAAIFMTAT 317 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSS
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHh-cccCccEEEEECC
Confidence 45666554 334456778999999999999999999999999999999977555555555555443 2367899999999
Q ss_pred CChHHHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHh
Q 041899 164 LDAEKFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRK 243 (650)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~ 243 (650)
++.. ...+.... ...++++..+ +..++ . .++..... ..+++||||+++++++.+++.|.+.
T Consensus 318 ~~~~-~~~~~~~~------~~~~~v~~~~---~~~~~-~----~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~--- 378 (618)
T 2whx_A 318 PPGS-TDPFPQSN------SPIEDIEREI---PERSW-N----TGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKS--- 378 (618)
T ss_dssp CTTC-CCSSCCCS------SCEEEEECCC---CSSCC-S----SSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred Cchh-hhhhhccC------CceeeecccC---CHHHH-H----HHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHc---
Confidence 9543 22222211 1111222111 11111 0 01111111 3779999999999999999999875
Q ss_pred hcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceec--cCCCCcccceee
Q 041899 244 LGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWY--NPKTGMESLLVY 321 (650)
Q Consensus 244 ~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~--d~~~~~~~l~~~ 321 (650)
+..+..+||. +|.++++.|++|+.+|||||+++++|+|+| +++|||+|+.+.+.+ +...++...++.
T Consensus 379 ------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~ 447 (618)
T 2whx_A 379 ------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPI 447 (618)
T ss_dssp ------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred ------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccc
Confidence 6778899984 688899999999999999999999999998 999999999888776 555567778999
Q ss_pred ecCHHhHHhhccccCCCC--CcEEEEeeCc
Q 041899 322 PISKASAMQRAGRSGRTG--PGKCFRLYTI 349 (650)
Q Consensus 322 ~~s~~~~~Qr~GRaGR~~--~G~~~~l~~~ 349 (650)
|.|.++|+||+||+||.| +|.||.++++
T Consensus 448 P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~ 477 (618)
T 2whx_A 448 PVTPASAAQRRGRIGRNPAQEDDQYVFSGD 477 (618)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCHHHHHHhccccCCCCCCCCeEEEEccC
Confidence 999999999999999996 7999999973
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-36 Score=318.45 Aligned_cols=300 Identities=17% Similarity=0.198 Sum_probs=220.7
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.+--.++++|.++++.+.+++++++++|||+|||.++...+++. +.++++++|+++|+.|+++++.+. +...+..
T Consensus 12 ~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~-~~~~~~~ 86 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----GMKSLVVTPTRELTRQVASHIRDI-GRYMDTK 86 (337)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHH-TTTSCCC
T ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh----cCCEEEEeCCHHHHHHHHHHHHHH-hhhcCCc
Confidence 34456899999999999999999999999999998777766654 568999999999999999998753 3333333
Q ss_pred eeeeecccc-----cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 86 VGYSIRFED-----CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 86 vg~~~~~~~-----~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
++....... ......+|+++|++.|.+.+.... .+.++++||+||+|.. ....+...+...+.......++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (337)
T 2z0m_A 87 VAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM-FEMGFIDDIKIILAQTSNRKITGL 165 (337)
T ss_dssp EEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHH-HHTTCHHHHHHHHHHCTTCSEEEE
T ss_pred EEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHh-hccccHHHHHHHHhhCCcccEEEE
Confidence 332221111 111347899999999998876654 5788999999999932 122222222222223455778899
Q ss_pred EccCCChH---HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHH
Q 041899 160 SSATLDAE---KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEI 236 (650)
Q Consensus 160 ~SAT~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~ 236 (650)
||||++.. .+..++.+...+........+...+........ . .........++++|||++++++++.+++.
T Consensus 166 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~lvf~~~~~~~~~l~~~ 239 (337)
T 2z0m_A 166 FSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWR-S-----KVQALRENKDKGVIVFVRTRNRVAKLVRL 239 (337)
T ss_dssp EESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSH-H-----HHHHHHTCCCSSEEEECSCHHHHHHHHTT
T ss_pred EeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHH-H-----HHHHHHhCCCCcEEEEEcCHHHHHHHHHH
Confidence 99999654 455666544333333223344544444333221 1 12333445678999999999999998877
Q ss_pred HHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcc
Q 041899 237 LKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGME 316 (650)
Q Consensus 237 L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~ 316 (650)
|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+.
T Consensus 240 l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~--------------- 291 (337)
T 2z0m_A 240 FD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINF--------------- 291 (337)
T ss_dssp CT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEES---------------
T ss_pred hh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEe---------------
Confidence 64 25679999999999999999999999999999999999999999999984
Q ss_pred cceeeecCHHhHHhhccccCCCC-CcEEEEeeC
Q 041899 317 SLLVYPISKASAMQRAGRSGRTG-PGKCFRLYT 348 (650)
Q Consensus 317 ~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 348 (650)
+.|.|..+|.||+||+||.| +|.|+.++.
T Consensus 292 ---~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 292 ---DAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp ---SCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred ---cCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 34789999999999999997 799999987
No 27
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-37 Score=333.46 Aligned_cols=313 Identities=17% Similarity=0.265 Sum_probs=116.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
--.++++|.++++.+.+++++++++|||+|||.++...++..... .++++++++|+++|+.|+++.+.+.. ...+..
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~ 119 (394)
T 1fuu_A 41 FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIK 119 (394)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCC
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh-ccCCee
Confidence 346899999999999999999999999999997766555544222 34599999999999999999886643 222332
Q ss_pred eeeeecccc-----cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 86 VGYSIRFED-----CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 86 vg~~~~~~~-----~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
++....... ......+|+++|++.+++.+.... .+.++++||+||+|. .....+...+.+.+....++.++++
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~-~~~~~~~~~~~~~~~~~~~~~~~i~ 198 (394)
T 1fuu_A 120 VHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE-MLSSGFKEQIYQIFTLLPPTTQVVL 198 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH-HHHTTCHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHH-hhCCCcHHHHHHHHHhCCCCceEEE
Confidence 322111111 011256899999999998887654 578899999999993 2222233333333333567889999
Q ss_pred EccCCChH---HHHhhhCCCCccccCCccc---ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 041899 160 SSATLDAE---KFSAYFNFAPILRVPGRRY---PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETV 233 (650)
Q Consensus 160 ~SAT~~~~---~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~ 233 (650)
||||++.. ....++.....+.+..... .+...+......++... .+..+....+.+++||||+++++++.+
T Consensus 199 ~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 199 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYE---CLTDLYDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp ECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------------------------------
T ss_pred EEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHH---HHHHHHhcCCCCcEEEEECCHHHHHHH
Confidence 99999653 3344554332222222111 12222222222222211 222233333467999999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCC
Q 041899 234 EEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKT 313 (650)
Q Consensus 234 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~ 313 (650)
++.|.+. ++.+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 276 ~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~------------- 333 (394)
T 1fuu_A 276 TTKLRND---------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN------------- 333 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHc---------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE-------------
Confidence 9999765 677889999999999999999999999999999999999999999999998
Q ss_pred CcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 314 GMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 314 ~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
.+.|.|..+|.||+||+||.| +|.|+.++++++.
T Consensus 334 -----~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 368 (394)
T 1fuu_A 334 -----YDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDV 368 (394)
T ss_dssp ----------------------------------------
T ss_pred -----eCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHH
Confidence 444789999999999999997 7999999988765
No 28
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.6e-37 Score=338.51 Aligned_cols=304 Identities=18% Similarity=0.254 Sum_probs=221.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHH--HHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTT--QIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~--~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++++|||+|||. ++|.+.. ++.++|++|+++|+.|+++++.+ +|..+....|
T Consensus 25 ~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~-~gi~~~~l~~ 97 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQA-NGVAAACLNS 97 (523)
T ss_dssp SCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHH-TTCCEEEECT
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHH-cCCcEEEEeC
Confidence 4689999999999999999999999999995 5554432 46899999999999999998864 5554332222
Q ss_pred eeeccc------ccCCCCceEEEEChHHHHHHHh-cCCCCCCCceEEecccccCCc---cccHHHHHHHHHHhcCCCceE
Q 041899 88 YSIRFE------DCTSEKTVLKYMTDGMVLREML-SDPKLESYSVLMVDEAHERTL---STDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 88 ~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~-~~~~l~~~~~iIiDE~Her~~---~~d~ll~~l~~~~~~~~~~ki 157 (650)
.....+ .......+|+|+||+.|..... ......++++|||||+|..+. +.......+..+....++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~ 177 (523)
T 1oyw_A 98 TQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPF 177 (523)
T ss_dssp TSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCE
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCE
Confidence 111100 1112457899999998852111 111236889999999995432 222333344445556678999
Q ss_pred EEEccCCChH---HHHhhhC-CCCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHH
Q 041899 158 LISSATLDAE---KFSAYFN-FAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETV 233 (650)
Q Consensus 158 i~~SAT~~~~---~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~ 233 (650)
++||||++.. .+.++++ ..+.+.+.+...+ .+.|......+... .+.......+++++||||+++++++.+
T Consensus 178 i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~v~~~~~~~~----~l~~~l~~~~~~~~IVf~~sr~~~e~l 252 (523)
T 1oyw_A 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYMLMEKFKPLD----QLMRYVQEQRGKSGIIYCNSRAKVEDT 252 (523)
T ss_dssp EEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEEEEECSSHHH----HHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEEEEeCCCHHH----HHHHHHHhcCCCcEEEEeCCHHHHHHH
Confidence 9999999664 4555664 2333333322222 12222222223232 233333344578999999999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCC
Q 041899 234 EEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKT 313 (650)
Q Consensus 234 ~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~ 313 (650)
++.|.+. ++.+..+||+|+.++|.++++.|++|+.+|||||+++++|||+|+|++||+.+
T Consensus 253 ~~~L~~~---------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~----------- 312 (523)
T 1oyw_A 253 AARLQSK---------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD----------- 312 (523)
T ss_dssp HHHHHHT---------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS-----------
T ss_pred HHHHHHC---------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC-----------
Confidence 9999875 67799999999999999999999999999999999999999999999999943
Q ss_pred CcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 314 GMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 314 ~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
.|.|.++|.||+|||||.| +|.|+.+|+..+.
T Consensus 313 -------~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 313 -------IPRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp -------CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred -------CCCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 4889999999999999999 8999999987765
No 29
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.6e-36 Score=328.43 Aligned_cols=290 Identities=17% Similarity=0.173 Sum_probs=205.3
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeeccc-ccCCCC
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFE-DCTSEK 99 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~-~~~~~~ 99 (650)
++.++++++++||||||||.++...++......+.+++|++|+++||.|+++.+. +. .+++..... ....+.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~---~~----~v~~~~~~~~~v~Tp~ 76 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH---GL----DVKFHTQAFSAHGSGR 76 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT---TS----CEEEESSCCCCCCCSS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh---cC----CeEEecccceeccCCc
Confidence 3567899999999999999765444444333445689999999999999998774 22 234433322 233455
Q ss_pred ceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCCcc
Q 041899 100 TVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPIL 179 (650)
Q Consensus 100 ~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~ 179 (650)
..+.+++.+.+.+.+.....+.++++|||||+|..+...+..+..+..... .++.++++||||++.. ...+...
T Consensus 77 ~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~-~~~~~~~---- 150 (440)
T 1yks_A 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT-SDEFPHS---- 150 (440)
T ss_dssp CCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCC----
T ss_pred cceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch-hhhhhhc----
Confidence 566788888888888888889999999999999764444455555555443 4678999999998543 1111111
Q ss_pred ccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCC
Q 041899 180 RVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYAN 259 (650)
Q Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~ 259 (650)
..++.......+..... ..+..+ . ..++++||||+++++++.+++.|.+. ++.+..+||
T Consensus 151 -----~~~~~~~~~~~~~~~~~-~~~~~l----~-~~~~~~lVF~~s~~~a~~l~~~L~~~---------~~~v~~lhg- 209 (440)
T 1yks_A 151 -----NGEIEDVQTDIPSEPWN-TGHDWI----L-ADKRPTAWFLPSIRAANVMAASLRKA---------GKSVVVLNR- 209 (440)
T ss_dssp -----SSCEEEEECCCCSSCCS-SSCHHH----H-HCCSCEEEECSCHHHHHHHHHHHHHT---------TCCEEECCS-
T ss_pred -----CCCeeEeeeccChHHHH-HHHHHH----H-hcCCCEEEEeCCHHHHHHHHHHHHHc---------CCCEEEecc-
Confidence 11121111111111110 001111 1 12689999999999999999999874 577899999
Q ss_pred CCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceec-cCCCCcccceeeecCHHhHHhhccccCCC
Q 041899 260 LPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWY-NPKTGMESLLVYPISKASAMQRAGRSGRT 338 (650)
Q Consensus 260 l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~-d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~ 338 (650)
++|.++++.|++|+.+|||||+++++|||+| +++||++|+.+.+.| +...++....+.|.+.++|.||+||+||.
T Consensus 210 ---~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 285 (440)
T 1yks_A 210 ---KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN 285 (440)
T ss_dssp ---SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred ---hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCC
Confidence 4688999999999999999999999999999 999999999998887 55556777789999999999999999997
Q ss_pred C--CcEEEEeeC
Q 041899 339 G--PGKCFRLYT 348 (650)
Q Consensus 339 ~--~G~~~~l~~ 348 (650)
| +|.||.+|+
T Consensus 286 g~~~g~~~~l~~ 297 (440)
T 1yks_A 286 PNRDGDSYYYSE 297 (440)
T ss_dssp TTCCCEEEEECS
T ss_pred CCCCceEEEEec
Confidence 4 899999985
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-37 Score=343.47 Aligned_cols=317 Identities=17% Similarity=0.199 Sum_probs=206.0
Q ss_pred CchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccCC--CCeEEEecchHHHHHHHHHHHHHHhCC-ccCc
Q 041899 10 PIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYTK--HGKVGCTQPRRVAAISVAARVSREMGV-KLGH 84 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~~--~~~ilv~~P~r~la~q~~~~v~~~~~~-~~g~ 84 (650)
.++++|.++++.+.++ +++++++|||||||.++.+.++...... +++++|++|+++|+.|+++++.+..+. .+..
T Consensus 141 ~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~ 220 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKT 220 (508)
T ss_dssp ECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCE
T ss_pred CcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCeeE
Confidence 3678899999999987 9999999999999987766666553322 348999999999999999999775432 1222
Q ss_pred EeeeeecccccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 85 EVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 85 ~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
..++............+|+++|++.+.+.+.... .+.++++|||||+|.......+...+........++.++|+||||
T Consensus 221 ~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT 300 (508)
T 3fho_A 221 AFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSAT 300 (508)
T ss_dssp EC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESC
T ss_pred EEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCC
Confidence 2232222222333468899999999998887655 588999999999995443233333333333335668999999999
Q ss_pred CC--hHHHHhhhCC-CCccccCCccc---ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHH
Q 041899 164 LD--AEKFSAYFNF-APILRVPGRRY---PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEIL 237 (650)
Q Consensus 164 ~~--~~~~~~~~~~-~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L 237 (650)
++ .+.+...+.. ...+.+..... .+...+......+. ....+..+.....++++||||+++++++.++..|
T Consensus 301 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 301 FSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEH---KYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp CSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHH---HHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred CCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHH---HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 95 4555555443 32333332222 12222333222222 2223444444456789999999999999999988
Q ss_pred HHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCccc
Q 041899 238 KERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMES 317 (650)
Q Consensus 238 ~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~ 317 (650)
.+. +..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+.+....
T Consensus 378 ~~~---------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~----------- 437 (508)
T 3fho_A 378 TAD---------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLD----------- 437 (508)
T ss_dssp TTT---------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----------
T ss_pred HhC---------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCc-----------
Confidence 653 567889999999999999999999999999999999999999999999998432100
Q ss_pred ceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 318 LLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 318 l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
.....|..+|.||+|||||.| +|.|+.+++..
T Consensus 438 -~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 438 -QAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp ------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred -ccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 001268899999999999998 79999999754
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-36 Score=339.12 Aligned_cols=319 Identities=16% Similarity=0.162 Sum_probs=220.9
Q ss_pred CCchHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHhcccC------CCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 9 LPIYHYREQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYLHEAGYT------KHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 9 lpl~~~q~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l~~~~~~------~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
-.++++|.++++.+. ++++++++||||||||..+...++..... .+.+++|++|+++|+.|+++++.+..+.
T Consensus 93 ~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 348999999999998 67899999999999996544444332111 1248999999999999999999875432
Q ss_pred cc----CcEeeeeecccc-------cCCCCceEEEEChHHHHHHHhcC--CCCCCCceEEecccccCCcc--ccHHHHHH
Q 041899 81 KL----GHEVGYSIRFED-------CTSEKTVLKYMTDGMVLREMLSD--PKLESYSVLMVDEAHERTLS--TDILLGIF 145 (650)
Q Consensus 81 ~~----g~~vg~~~~~~~-------~~~~~~~i~~~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~ll~~l 145 (650)
.. ...+. ...... ......+|+|+|++.|+..+... ..++++++|||||||.-.-. ...+..++
T Consensus 173 ~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~ 251 (563)
T 3i5x_A 173 NYGLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETIS 251 (563)
T ss_dssp CGGGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHH
T ss_pred ccccCceeEEE-EECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHH
Confidence 11 11111 111111 01235689999999998877553 25788999999999932111 12222222
Q ss_pred HHHHh----cCCCceEEEEccCCCh--HHHHhhhCCCC-ccccC-------CcccceeEEEecC-CCCchHHHHHHHHHH
Q 041899 146 KDLVR----LRSDLKLLISSATLDA--EKFSAYFNFAP-ILRVP-------GRRYPVEIHYTKA-PESNYIDAAIVTTLE 210 (650)
Q Consensus 146 ~~~~~----~~~~~kii~~SAT~~~--~~~~~~~~~~~-~~~~~-------~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 210 (650)
..+.. ..++.++++||||++. ..+...+...+ .+.+. .....+...+... .........+..+..
T Consensus 252 ~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 331 (563)
T 3i5x_A 252 GILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKK 331 (563)
T ss_dssp HHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred HhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHH
Confidence 22222 2347899999999953 44444443322 11110 0111222222222 222233333333333
Q ss_pred HHh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccc
Q 041899 211 IHA-TQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETS 289 (650)
Q Consensus 211 ~~~-~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~g 289 (650)
... ..+++++||||+++..++.++..|.+... .++.+..+||+|+.++|.++++.|++|+.+|||||+++++|
T Consensus 332 ~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~G 405 (563)
T 3i5x_A 332 QIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARG 405 (563)
T ss_dssp HHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSS
T ss_pred HHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc------CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcC
Confidence 332 25578999999999999999999988643 25778999999999999999999999999999999999999
Q ss_pred CcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 290 LTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 290 idip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
||+|+|++||+ ++.|.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 406 iDip~v~~VI~------------------~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 406 MDFPNVHEVLQ------------------IGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp CCCTTCCEEEE------------------ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CCcccCCEEEE------------------ECCCCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 99999999998 444889999999999999998 7999999987653
No 32
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.5e-36 Score=326.23 Aligned_cols=286 Identities=18% Similarity=0.210 Sum_probs=208.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecc-cccCCCCceE
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRF-EDCTSEKTVL 102 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~-~~~~~~~~~i 102 (650)
++++++++||||||||..+...+++.....+.+++|++|+++|+.|+++.+. |..+++.... .....+...+
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~~~~~~~~ 73 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSERTGNEIV 73 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC---------CCCSE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccccCCCCceE
Confidence 4789999999999999765444443333456699999999999999887663 2344444433 2333456778
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCCccccC
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVP 182 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~ 182 (650)
.++|.+.+.+.+..++.+.++++|||||+|..+...+.....++... .+++.++++||||+... +..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~--------- 142 (431)
T 2v6i_A 74 DFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFP--------- 142 (431)
T ss_dssp EEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSC---------
T ss_pred EEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhc---------
Confidence 89999999998888888999999999999976555555566666554 34689999999999642 11111
Q ss_pred CcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCH
Q 041899 183 GRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPT 262 (650)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~ 262 (650)
....|+.......+..++ . .++.... ..++++||||+++++++.+++.|.+. +..+..+||+
T Consensus 143 ~~~~~i~~~~~~~~~~~~-~----~~~~~l~-~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~v~~lhg~--- 204 (431)
T 2v6i_A 143 PSNSPIIDEETRIPDKAW-N----SGYEWIT-EFDGRTVWFVHSIKQGAEIGTCLQKA---------GKKVLYLNRK--- 204 (431)
T ss_dssp CCSSCCEEEECCCCSSCC-S----SCCHHHH-SCSSCEEEECSSHHHHHHHHHHHHHT---------TCCEEEESTT---
T ss_pred CCCCceeeccccCCHHHH-H----HHHHHHH-cCCCCEEEEeCCHHHHHHHHHHHHHc---------CCeEEEeCCc---
Confidence 111122111111111111 0 0111112 23679999999999999999999874 5778999997
Q ss_pred HHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC-c
Q 041899 263 ELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP-G 341 (650)
Q Consensus 263 ~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~-G 341 (650)
+|.++++.|++|+.+|||||+++++|+|+| +.+||++|..+.+.|| ..++....+.|.+.++|.||+||+||.|+ +
T Consensus 205 -~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 -TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp -THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred -cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 577899999999999999999999999999 9999999999999999 67777888999999999999999999983 4
Q ss_pred EEEEeeC
Q 041899 342 KCFRLYT 348 (650)
Q Consensus 342 ~~~~l~~ 348 (650)
.|+.+|.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 4555554
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.2e-36 Score=348.13 Aligned_cols=320 Identities=14% Similarity=0.148 Sum_probs=183.3
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC----CCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT----KHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~----~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
+...++++|.++++.+.+++++|+++|||+|||+++...+++.... .+++++|++|+++|+.|+++.+.+.+. ..
T Consensus 10 g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~-~~ 88 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE-RH 88 (696)
T ss_dssp C--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT-TT
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc-cC
Confidence 3456899999999999999999999999999998777666543221 226899999999999999988877552 22
Q ss_pred CcEeeeeecccccC------CCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHh----
Q 041899 83 GHEVGYSIRFEDCT------SEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVR---- 150 (650)
Q Consensus 83 g~~vg~~~~~~~~~------~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~---- 150 (650)
+..++......... ....+|+|+|+++|++.+..+. .+.++++|||||||+..-... ...++.....
T Consensus 89 ~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~~~~~ 167 (696)
T 2ykg_A 89 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLDQKLG 167 (696)
T ss_dssp TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHT
T ss_pred CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHHHhhc
Confidence 33333222111111 1357899999999999887764 488899999999996543333 2222222221
Q ss_pred --cCCCceEEEEccCCC-------hHHHHh---hhC--CCCccccCCcc---------cceeEEEec-CCC---------
Q 041899 151 --LRSDLKLLISSATLD-------AEKFSA---YFN--FAPILRVPGRR---------YPVEIHYTK-APE--------- 197 (650)
Q Consensus 151 --~~~~~kii~~SAT~~-------~~~~~~---~~~--~~~~~~~~~~~---------~~v~~~~~~-~~~--------- 197 (650)
..+..++++||||+. .+.+.. ++. +..++...... .|....... ...
T Consensus 168 ~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~ 247 (696)
T 2ykg_A 168 GSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIA 247 (696)
T ss_dssp TCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHH
Confidence 246789999999996 222222 211 01110000000 000000000 000
Q ss_pred --------------------------------------------------------------------------------
Q 041899 198 -------------------------------------------------------------------------------- 197 (650)
Q Consensus 198 -------------------------------------------------------------------------------- 197 (650)
T Consensus 248 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~ 327 (696)
T 2ykg_A 248 QLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISE 327 (696)
T ss_dssp HHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccc
Confidence
Q ss_pred ----------------------Cch-------------------------HHHHHHHHHHHHh----cCCCCCEEEEeCC
Q 041899 198 ----------------------SNY-------------------------IDAAIVTTLEIHA----TQASGDILVFLTG 226 (650)
Q Consensus 198 ----------------------~~~-------------------------~~~~~~~~~~~~~----~~~~~~iLVF~~~ 226 (650)
.+. .......+..+.. ..+++++||||++
T Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~ 407 (696)
T 2ykg_A 328 HARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKT 407 (696)
T ss_dssp HSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSC
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCc
Confidence 000 0001111222222 2356899999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCceEEEee--------cCCCCHHHHhhhcCCCCC-CCcEEEEeCCCccccCcCCCeEE
Q 041899 227 QEEIETVEEILKERIRKLGTKIGELIVCPV--------YANLPTELQAKIFVPTPD-GARKVVLATNIAETSLTIDGIKY 297 (650)
Q Consensus 227 ~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l--------h~~l~~~~r~~i~~~~~~-g~~kilvaT~i~e~gidip~v~~ 297 (650)
+.+++.+++.|.+.. ....+.+..+ ||+|+.++|.++++.|++ |+++|||||+++++|||+|++++
T Consensus 408 ~~~~~~l~~~L~~~~-----~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 408 RALVDALKNWIEGNP-----KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp HHHHHHHHHHHHHCT-----TCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred HHHHHHHHHHHHhCC-----CccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 999999999998741 1112556666 669999999999999998 99999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCcccc
Q 041899 298 VVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 298 VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 352 (650)
||+ ++.|.|..+|.||+|| ||.++|.|+.|+++.+.
T Consensus 483 VI~------------------~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 483 VIL------------------YEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGV 518 (696)
T ss_dssp EEE------------------ESCC--CCCC----------CCCEEEEEESCHHH
T ss_pred EEE------------------eCCCCCHHHHHHhhcc-CcCCCceEEEEecCCCH
Confidence 998 3447888899999999 99999999999998765
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=8.1e-36 Score=335.38 Aligned_cols=318 Identities=17% Similarity=0.171 Sum_probs=220.3
Q ss_pred CchHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHhcccC------CCCeEEEecchHHHHHHHHHHHHHHhC--
Q 041899 10 PIYHYREQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYLHEAGYT------KHGKVGCTQPRRVAAISVAARVSREMG-- 79 (650)
Q Consensus 10 pl~~~q~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l~~~~~~------~~~~ilv~~P~r~la~q~~~~v~~~~~-- 79 (650)
.++++|.++++.+. ++++++++||||||||..+...+++.... .+.+++|++|+++|+.|+++.+.+..+
T Consensus 43 ~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~ 122 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMN 122 (579)
T ss_dssp SCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhc
Confidence 38999999999998 78899999999999996544444332111 134899999999999999999987542
Q ss_pred --CccCcEeeeeecccc-------cCCCCceEEEEChHHHHHHHhcC--CCCCCCceEEecccccCCcc--ccHHHHHHH
Q 041899 80 --VKLGHEVGYSIRFED-------CTSEKTVLKYMTDGMVLREMLSD--PKLESYSVLMVDEAHERTLS--TDILLGIFK 146 (650)
Q Consensus 80 --~~~g~~vg~~~~~~~-------~~~~~~~i~~~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~--~d~ll~~l~ 146 (650)
........ ...... ......+|+|+|++.|+..+... ..+.++++|||||||...-. .+.+..++.
T Consensus 123 ~~~~~~~~~~-~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~ 201 (579)
T 3sqw_A 123 YGLKKYACVS-LVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISG 201 (579)
T ss_dssp GGGTTSCEEE-ECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ccccceEEEE-EECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHH
Confidence 11111111 111111 01125789999999998877553 25788999999999942211 122222333
Q ss_pred HHHhc----CCCceEEEEccCCCh--HHHHhhhCCCC-ccccC-------CcccceeEEEecCCC-CchHHHHHHHHHHH
Q 041899 147 DLVRL----RSDLKLLISSATLDA--EKFSAYFNFAP-ILRVP-------GRRYPVEIHYTKAPE-SNYIDAAIVTTLEI 211 (650)
Q Consensus 147 ~~~~~----~~~~kii~~SAT~~~--~~~~~~~~~~~-~~~~~-------~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~ 211 (650)
.+... .++.++++||||++. ..+...+...+ .+.+. .....+...+..... .......+..+...
T Consensus 202 ~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 281 (579)
T 3sqw_A 202 ILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQ 281 (579)
T ss_dssp HHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred HhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHH
Confidence 33222 237899999999954 34444333222 11111 111122322222221 22233333333333
Q ss_pred Hh-cCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccC
Q 041899 212 HA-TQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSL 290 (650)
Q Consensus 212 ~~-~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gi 290 (650)
.. ..+++++||||+++.+++.+++.|.+... .++.+..+||+|+.++|.++++.|++|+.+|||||+++++||
T Consensus 282 ~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~Gi 355 (579)
T 3sqw_A 282 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGM 355 (579)
T ss_dssp HHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT------TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSC
T ss_pred HhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc------CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCC
Confidence 33 24578999999999999999999987643 256788999999999999999999999999999999999999
Q ss_pred cCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 291 TIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 291 dip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
|+|+|++||+ ++.|.+..+|+||+|||||.| +|.|+.++++.+.
T Consensus 356 Dip~v~~VI~------------------~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 356 DFPNVHEVLQ------------------IGVPSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp CCTTCCEEEE------------------ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred CcccCCEEEE------------------cCCCCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 9999999998 444889999999999999999 7999999987653
No 35
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.4e-36 Score=336.54 Aligned_cols=364 Identities=17% Similarity=0.169 Sum_probs=250.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
.++++++++||||||||+.+.+.+... +..+|++|+|+||.|+++++.+ .|..++..+|..............+
T Consensus 153 l~rk~vlv~apTGSGKT~~al~~l~~~-----~~gl~l~PtR~LA~Qi~~~l~~-~g~~v~lltG~~~~iv~TpGr~~~i 226 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTYHAIQKYFSA-----KSGVYCGPLKLLAHEIFEKSNA-AGVPCDLVTGEERVTVQPNGKQASH 226 (677)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHS-----SSEEEEESSHHHHHHHHHHHHH-TTCCEEEECSSCEECCSTTCCCCSE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-----CCeEEEeCHHHHHHHHHHHHHh-cCCcEEEEECCeeEEecCCCcccce
Confidence 367899999999999999766666553 2458889999999999999865 5766665555433322222334678
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC-CCceEEEEccCC-ChHHHHhhhCCCCccc
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR-SDLKLLISSATL-DAEKFSAYFNFAPILR 180 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~-~~~kii~~SAT~-~~~~~~~~~~~~~~~~ 180 (650)
+++|.+++ +....+++|||||+|+. .+.++...+...+.... ++.+++++|||. ..+.+....+....+.
T Consensus 227 l~~T~e~~-------~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~v~ 298 (677)
T 3rc3_A 227 VSCTVEMC-------SVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVR 298 (677)
T ss_dssp EEEEGGGC-------CSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEEEE
T ss_pred eEecHhHh-------hhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceEEE
Confidence 88887643 34678899999999954 45555555555555554 678999999996 2333443333221111
Q ss_pred cCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCC
Q 041899 181 VPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANL 260 (650)
Q Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l 260 (650)
...+..+.. +....-.. .... .+..+|||+++++++.+++.|.+. +..+..+||+|
T Consensus 299 ~~~r~~~l~--~~~~~l~~------------l~~~-~~g~iIf~~s~~~ie~la~~L~~~---------g~~v~~lHG~L 354 (677)
T 3rc3_A 299 DYKRLTPIS--VLDHALES------------LDNL-RPGDCIVCFSKNDIYSVSRQIEIR---------GLESAVIYGSL 354 (677)
T ss_dssp ECCCSSCEE--ECSSCCCS------------GGGC-CTTEEEECSSHHHHHHHHHHHHHT---------TCCCEEECTTS
T ss_pred EeeecchHH--HHHHHHHH------------HHhc-CCCCEEEEcCHHHHHHHHHHHHhc---------CCCeeeeeccC
Confidence 111111221 11111000 0111 233478899999999999999874 67799999999
Q ss_pred CHHHHhhhcCCCCC--CCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCC
Q 041899 261 PTELQAKIFVPTPD--GARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRT 338 (650)
Q Consensus 261 ~~~~r~~i~~~~~~--g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~ 338 (650)
++++|.++++.|++ |.++|||||+++++|||+ ++++||++|..|. .||+..+.. ..|.|.++|.||+|||||.
T Consensus 355 ~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~~---~~p~s~~~~~QR~GRAGR~ 429 (677)
T 3rc3_A 355 PPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGERE---LEPITTSQALQIAGRAGRF 429 (677)
T ss_dssp CHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCT
T ss_pred CHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCccc---cccCCHHHHHHHhcCCCCC
Confidence 99999999999988 889999999999999999 8999999999888 788774332 4589999999999999999
Q ss_pred C----CcEEEEeeCcc--ccccccCCCCCccccccChhHHHHHHHhcCCCCCCCCCCCCCChHHHHHHHHHHHHHcCCCC
Q 041899 339 G----PGKCFRLYTIN--SYQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNFDFLDSPPQELLRKALELLYALGALN 412 (650)
Q Consensus 339 ~----~G~~~~l~~~~--~~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~~~~~~p~~~~i~~a~~~L~~~g~l~ 412 (650)
| +|.||++++++ .+ ..+.....|+|.+.++....+.++.++.. + +...+...++.+.+++.+|
T Consensus 430 g~~g~~G~v~~l~~~d~~~~-~~~~~~~~~~i~~~~l~p~~~~l~~~~~~-l---------~~~~l~ell~~l~~~~~vd 498 (677)
T 3rc3_A 430 SSRFKEGEVTTMNHEDLSLL-KEILKRPVDPIRAAGLHPTAEQIEMFAYH-L---------PDATLSNLIDIFVDFSQVD 498 (677)
T ss_dssp TSSCSSEEEEESSTTHHHHH-HHHHHSCCCCCCCEEECCCHHHHHHHHHH-S---------TTSCHHHHHHHHHHHCBCC
T ss_pred CCCCCCEEEEEEecchHHHH-HHHHhcCcchhhhccCCChHHHHHHHhcc-C---------CcchHHHHHHHHHHhhccc
Confidence 9 58999999876 33 34677888999998888888888887621 1 1112556667777777776
Q ss_pred CCC---C---ccHHHHHhccCCCChHHHHHHHhh
Q 041899 413 QVG---E---LTKVGRQMAEFPLDPMLSKMIVAS 440 (650)
Q Consensus 413 ~~~---~---lT~lG~~~~~~p~~p~~~~~l~~~ 440 (650)
... + ...++..+..+|++...--.++.+
T Consensus 499 ~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~a 532 (677)
T 3rc3_A 499 GQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTA 532 (677)
T ss_dssp TTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHS
T ss_pred chhhccchHHHHHHHHHHhhCCCCHHHHhheEeC
Confidence 432 1 345666677777776665555444
No 36
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=9.5e-36 Score=321.33 Aligned_cols=299 Identities=16% Similarity=0.127 Sum_probs=207.7
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
......++++|.++++.+.++++++++||||||||......++.. ...+++++|++|+++|+.|+++++.+ ++. .|.
T Consensus 16 ~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~-~~~ 92 (414)
T 3oiy_A 16 KKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLERLQK-LAD-EKV 92 (414)
T ss_dssp HHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHHHHH-HCC-SSC
T ss_pred HhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHHHHHHHHH-Hcc-CCc
Confidence 344567899999999999999999999999999996433333332 24567999999999999999999977 433 444
Q ss_pred Eeeeeeccccc----------CCCCceEEEEChHHHHHHHhcCCCCCCCceEEeccccc---------CCcc-ccHHHHH
Q 041899 85 EVGYSIRFEDC----------TSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHE---------RTLS-TDILLGI 144 (650)
Q Consensus 85 ~vg~~~~~~~~----------~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~He---------r~~~-~d~ll~~ 144 (650)
.++........ .....+|+++||+.|++.+.. ..+.++++|||||+|. +.++ .++....
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~ 171 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 171 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHH
Confidence 44433222211 112479999999999765543 4567899999999993 2222 2121121
Q ss_pred HHHHHh-cC-----------CCceEEEEccCCChH-----HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHH
Q 041899 145 FKDLVR-LR-----------SDLKLLISSATLDAE-----KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVT 207 (650)
Q Consensus 145 l~~~~~-~~-----------~~~kii~~SAT~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 207 (650)
+..+.. .+ ++.+++++|||+.++ .+..+++ ..+.........+...+......+.+
T Consensus 172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l------ 244 (414)
T 3oiy_A 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL------ 244 (414)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHH------
T ss_pred HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHH------
Confidence 222222 11 678999999995322 2333332 11111122223455555544322221
Q ss_pred HHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEE-eecCCCCHHHHhhhcCCCCCCCcEEEEe----
Q 041899 208 TLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVC-PVYANLPTELQAKIFVPTPDGARKVVLA---- 282 (650)
Q Consensus 208 ~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~i~~~~~~g~~kilva---- 282 (650)
..+... .++++||||+++.+++.++..|.+. ++.+. .+||. +|+ ++.|++|+.+||||
T Consensus 245 -~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 245 -VELLEI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp -HHHHHH-HCSSEEEEESSHHHHHHHHHHHHHT---------TCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred -HHHHHH-cCCCEEEEECCHHHHHHHHHHHHHc---------CCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 122221 2589999999999999999999874 56677 88884 333 88999999999999
Q ss_pred CCCccccCcCCC-eEEEEeCCcccceeccCCCCcccceeee--cCHHhHHhhccccCCCC-----CcEEEEeeCc
Q 041899 283 TNIAETSLTIDG-IKYVVDSGYSKMKWYNPKTGMESLLVYP--ISKASAMQRAGRSGRTG-----PGKCFRLYTI 349 (650)
Q Consensus 283 T~i~e~gidip~-v~~VId~G~~k~~~~d~~~~~~~l~~~~--~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~ 349 (650)
|+++++|+|+|+ |++||+ ++.| .+..+|.||+|||||.| .|.|+.++..
T Consensus 308 T~~~~~GiDip~~v~~VI~------------------~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~ 364 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIF------------------WGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEED 364 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEE------------------ESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECCC
T ss_pred CchhhccCccccccCEEEE------------------ECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEcc
Confidence 999999999999 999998 3447 89999999999999986 6899999843
No 37
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.1e-35 Score=324.34 Aligned_cols=319 Identities=21% Similarity=0.215 Sum_probs=223.7
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC---ccC
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV---KLG 83 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~---~~g 83 (650)
..++++++|.++++.+.++ ++++.+|||+|||+++..++.......+++++|++|+++|+.|+++.+.+.++. .++
T Consensus 6 ~~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 6 DLIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HHHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CCCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheE
Confidence 3568999999999999888 899999999999988877766543334669999999999999999999887765 333
Q ss_pred cEeeeeeccc-ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 84 HEVGYSIRFE-DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 84 ~~vg~~~~~~-~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
...|.....+ .......+|+++|++.+.+.+.... .+.++++||+||||.. ........+.+.+....+..++++||
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~-~~~~~~~~~~~~~~~~~~~~~~l~lT 163 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRA-VGNYAYVFIAREYKRQAKNPLVIGLT 163 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGC-STTCHHHHHHHHHHHHCSSCCEEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCccc-CCCCcHHHHHHHHHhcCCCCeEEEEe
Confidence 2222111100 0011256899999999998877654 5788999999999943 22223334445555556788999999
Q ss_pred cCCC--hHHHHhhh---CCCCcccc-C------CcccceeEEEe--cCCCC-----------------------------
Q 041899 162 ATLD--AEKFSAYF---NFAPILRV-P------GRRYPVEIHYT--KAPES----------------------------- 198 (650)
Q Consensus 162 AT~~--~~~~~~~~---~~~~~~~~-~------~~~~~v~~~~~--~~~~~----------------------------- 198 (650)
||+. .+.+.+++ +..+.... . ....+....+. ..+..
T Consensus 164 aTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (494)
T 1wp9_A 164 ASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS 243 (494)
T ss_dssp SCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC
T ss_pred cCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 9994 44544443 21110000 0 00001111110 00000
Q ss_pred -------------------------------------------------------chH----------------------
Q 041899 199 -------------------------------------------------------NYI---------------------- 201 (650)
Q Consensus 199 -------------------------------------------------------~~~---------------------- 201 (650)
.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (494)
T 1wp9_A 244 PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDK 323 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSH
T ss_pred CCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhH
Confidence 000
Q ss_pred ------------------HHHHHHHHHHHhc----CCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecC-
Q 041899 202 ------------------DAAIVTTLEIHAT----QASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYA- 258 (650)
Q Consensus 202 ------------------~~~~~~~~~~~~~----~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~- 258 (650)
...+..+.++... .+++++|||++++..++.+++.|.+. ++.+..+||
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~ 394 (494)
T 1wp9_A 324 RMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD---------GIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT---------TCCEEEECCS
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc---------CCCcEEEecc
Confidence 0001111122211 46789999999999999999999875 677888999
Q ss_pred -------CCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhh
Q 041899 259 -------NLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQR 331 (650)
Q Consensus 259 -------~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr 331 (650)
+++.++|.++++.|++|..+|||||+++++|+|+|++++||. ++.|.+...+.||
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~------------------~d~~~~~~~~~Qr 456 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF------------------YEPVPSAIRSIQR 456 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE------------------SSCCHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE------------------eCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999998 3447889999999
Q ss_pred ccccCCCCCcEEEEeeCcccccc
Q 041899 332 AGRSGRTGPGKCFRLYTINSYQE 354 (650)
Q Consensus 332 ~GRaGR~~~G~~~~l~~~~~~~~ 354 (650)
+||+||.|+|.+|+|+++.+.++
T Consensus 457 ~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 457 RGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp HTTSCSCCCSEEEEEEETTSHHH
T ss_pred HhhccCCCCceEEEEEecCCHHH
Confidence 99999999999999999876543
No 38
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=3.3e-35 Score=331.17 Aligned_cols=287 Identities=19% Similarity=0.246 Sum_probs=212.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeeccc-ccCCCCceE
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFE-DCTSEKTVL 102 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~-~~~~~~~~i 102 (650)
++++++++||||||||+++...++......+.+++|++|+++||.|+++.+.. + .+++..... ....+...+
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~-~------~i~~~~~~l~~v~tp~~ll 312 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG-L------PVRYLTPAVQREHSGNEIV 312 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-S------CCEECCC---CCCCSCCCE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc-C------CeeeecccccccCCHHHHH
Confidence 89999999999999997654444443334566899999999999999987742 1 123333221 133455677
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCChHHHHhhhCCCCccccC
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDAEKFSAYFNFAPILRVP 182 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~~~~~~~~~~~~~~~~~ 182 (650)
.+++.+.+.+.+..+..+.++++|||||+|+.+...+..+..++.... .++.++++||||++.. +.++ .
T Consensus 313 ~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~---------~ 381 (673)
T 2wv9_A 313 DVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPF---------P 381 (673)
T ss_dssp EEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSS---------C
T ss_pred HHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhh---------c
Confidence 889999999988888889999999999999776655566666666543 3578999999998533 1111 1
Q ss_pred CcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCH
Q 041899 183 GRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPT 262 (650)
Q Consensus 183 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~ 262 (650)
....|+.......+..... . .+.... ..++++||||+++++++.+++.|.+. ++.+..+||.
T Consensus 382 ~~~~~i~~v~~~~~~~~~~-~----~l~~l~-~~~~~~lVF~~s~~~~e~la~~L~~~---------g~~v~~lHg~--- 443 (673)
T 2wv9_A 382 DTNSPVHDVSSEIPDRAWS-S----GFEWIT-DYAGKTVWFVASVKMSNEIAQCLQRA---------GKRVIQLNRK--- 443 (673)
T ss_dssp CCSSCEEEEECCCCSSCCS-S----CCHHHH-SCCSCEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSS---
T ss_pred ccCCceEEEeeecCHHHHH-H----HHHHHH-hCCCCEEEEECCHHHHHHHHHHHHhC---------CCeEEEeChH---
Confidence 1122222211111111110 0 011111 24789999999999999999998764 6778999994
Q ss_pred HHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccccee--ccCCCCcccceeeecCHHhHHhhccccCCC-C
Q 041899 263 ELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKW--YNPKTGMESLLVYPISKASAMQRAGRSGRT-G 339 (650)
Q Consensus 263 ~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~--~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~-~ 339 (650)
+|.++++.|++|+++|||||+++++|||+| +++||++|....+. ||...++..+++.|.|.++|.||+||+||. +
T Consensus 444 -eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g 521 (673)
T 2wv9_A 444 -SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS 521 (673)
T ss_dssp -SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSS
T ss_pred -HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCC
Confidence 788999999999999999999999999999 99999999776644 677777777788999999999999999998 3
Q ss_pred -CcEEEEeeC
Q 041899 340 -PGKCFRLYT 348 (650)
Q Consensus 340 -~G~~~~l~~ 348 (650)
+|.||.++.
T Consensus 522 ~~G~ai~l~~ 531 (673)
T 2wv9_A 522 QIGDEYHYGG 531 (673)
T ss_dssp CCCEEEEECS
T ss_pred CCCEEEEEEe
Confidence 799999975
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.1e-35 Score=328.49 Aligned_cols=327 Identities=14% Similarity=0.139 Sum_probs=172.2
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC----CCeEEEecchHHHHHHHHHHHHHHh---C
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK----HGKVGCTQPRRVAAISVAARVSREM---G 79 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~~~~v~~~~---~ 79 (650)
..+.++++|.++++.+.+++++++++|||||||.++...+....... +++++|++|+++|+.|+++.+.+.+ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 45678999999999999999999999999999966555554432221 5689999999999999999997755 3
Q ss_pred CccCcEeeeeecccc--cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhc----
Q 041899 80 VKLGHEVGYSIRFED--CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRL---- 151 (650)
Q Consensus 80 ~~~g~~vg~~~~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~---- 151 (650)
..++...|....... ......+|+++|++.|.+.+.... .+.++++|||||||...-. .....++......
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~~~~ 162 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNS 162 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHHHHHHHHHHHHHCC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHHHHHHHHHHhhhcc
Confidence 333333331110000 011246899999999999887654 5889999999999944322 2334433333322
Q ss_pred -CCCceEEEEccCCC---hHHHH----------hhhCCCCccccCCc--------cccee-EEEecCCCCc---------
Q 041899 152 -RSDLKLLISSATLD---AEKFS----------AYFNFAPILRVPGR--------RYPVE-IHYTKAPESN--------- 199 (650)
Q Consensus 152 -~~~~kii~~SAT~~---~~~~~----------~~~~~~~~~~~~~~--------~~~v~-~~~~~~~~~~--------- 199 (650)
.+..++++||||+. ...+. ..++...+...... ..|.. .........+
T Consensus 163 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (556)
T 4a2p_A 163 ASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 242 (556)
T ss_dssp ---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred cCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHH
Confidence 46789999999992 22222 22221111111100 00110 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 041899 200 -------------------------------------------------------------------------------- 199 (650)
Q Consensus 200 -------------------------------------------------------------------------------- 199 (650)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (556)
T 4a2p_A 243 MSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 322 (556)
T ss_dssp HHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred --------------------------------------------------hHHHHHHHHHHHHhcCCCCCEEEEeCCHHH
Q 041899 200 --------------------------------------------------YIDAAIVTTLEIHATQASGDILVFLTGQEE 229 (650)
Q Consensus 200 --------------------------------------------------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~ 229 (650)
........+.......+++++||||+++..
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~ 402 (556)
T 4a2p_A 323 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 402 (556)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHH
Confidence 000000011111112457899999999999
Q ss_pred HHHHHHHHHHHHHhhcC---CCCceEEEeecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCccccCcCCCeEEEEeCCccc
Q 041899 230 IETVEEILKERIRKLGT---KIGELIVCPVYANLPTELQAKIFVPTPD-GARKVVLATNIAETSLTIDGIKYVVDSGYSK 305 (650)
Q Consensus 230 i~~~~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~kilvaT~i~e~gidip~v~~VId~G~~k 305 (650)
++.+++.|.+....... ...+.....+||+|+.++|.++++.|++ |..+|||||+++++|+|+|++++||+
T Consensus 403 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----- 477 (556)
T 4a2p_A 403 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----- 477 (556)
T ss_dssp HHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEE-----
T ss_pred HHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE-----
Confidence 99999998653100000 0113345567899999999999999999 99999999999999999999999998
Q ss_pred ceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccc
Q 041899 306 MKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQ 353 (650)
Q Consensus 306 ~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 353 (650)
++.|.|...|.||+|| ||.++|.||.|+++.+..
T Consensus 478 -------------~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 478 -------------YEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -------------ETCCSCHHHHHHC---------CCEEEEESCHHHH
T ss_pred -------------eCCCCCHHHHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 4458999999999999 999999999999987653
No 40
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-34 Score=322.80 Aligned_cols=324 Identities=15% Similarity=0.155 Sum_probs=195.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC----CCeEEEecchHHHHHHHHHHHHHHh---CC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK----HGKVGCTQPRRVAAISVAARVSREM---GV 80 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~~~~v~~~~---~~ 80 (650)
.+.++++|.++++.+.+++++++++|||||||.++...+....... +++++|++|+++|+.|+++.+.+.+ +.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 4678999999999999999999999999999966655554432221 5689999999999999999987755 44
Q ss_pred ccCcEeeeeecccc--cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhc-----
Q 041899 81 KLGHEVGYSIRFED--CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRL----- 151 (650)
Q Consensus 81 ~~g~~vg~~~~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----- 151 (650)
.++...|....... ......+|+++|++.|.+.+.... .+.++++|||||||...... ....++......
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~~~~~~~~~~~~~~ 160 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQIMFRYLDHKLGES 160 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHHHHHHHHHHHTSSC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHHHHHHHHHhhhccc
Confidence 33333331111000 011247899999999999887654 57889999999999543332 233333333322
Q ss_pred -CCCceEEEEccCCCh----------HHH---HhhhCCCCccccCCc---------ccce-eEEEecCCCC---------
Q 041899 152 -RSDLKLLISSATLDA----------EKF---SAYFNFAPILRVPGR---------RYPV-EIHYTKAPES--------- 198 (650)
Q Consensus 152 -~~~~kii~~SAT~~~----------~~~---~~~~~~~~~~~~~~~---------~~~v-~~~~~~~~~~--------- 198 (650)
.++.++++||||+.. +.+ ...++ .+.+..... ..|. ..........
T Consensus 161 ~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
T 3tbk_A 161 RDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD-ASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQ 239 (555)
T ss_dssp CSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT-CSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC-CeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHH
Confidence 266899999999932 112 12222 111111110 0011 1111110000
Q ss_pred --------------------------------------------------------------------------------
Q 041899 199 -------------------------------------------------------------------------------- 198 (650)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (650)
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 319 (555)
T 3tbk_A 240 LMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISED 319 (555)
T ss_dssp HHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence
Q ss_pred ---------------------------------------------------chHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 199 ---------------------------------------------------NYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 199 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
.........+.......+++++||||+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~ 399 (555)
T 3tbk_A 320 AQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTR 399 (555)
T ss_dssp SCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSH
T ss_pred hhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcH
Confidence 00000001111122224568999999999
Q ss_pred HHHHHHHHHHHHHHHhhc---CCCCceEEEeecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCccccCcCCCeEEEEeCCc
Q 041899 228 EEIETVEEILKERIRKLG---TKIGELIVCPVYANLPTELQAKIFVPTPD-GARKVVLATNIAETSLTIDGIKYVVDSGY 303 (650)
Q Consensus 228 ~~i~~~~~~L~~~~~~~~---~~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~kilvaT~i~e~gidip~v~~VId~G~ 303 (650)
..++.++..|.+...... ....+.....+||+|+.++|.++++.|++ |..+|||||+++++|+|+|++++||+
T Consensus 400 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~--- 476 (555)
T 3tbk_A 400 ALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL--- 476 (555)
T ss_dssp HHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE---
T ss_pred HHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE---
Confidence 999999999986411000 00112344556789999999999999999 99999999999999999999999998
Q ss_pred ccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCcccc
Q 041899 304 SKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 304 ~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 352 (650)
++.|.|..+|.||+|| ||..+|.||.|+++.+.
T Consensus 477 ---------------~d~p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 477 ---------------YEYVGNVIKMIQTRGR-GRARDSKCFLLTSSADV 509 (555)
T ss_dssp ---------------ESCCSSCCCEECSSCC-CTTTSCEEEEEESCHHH
T ss_pred ---------------eCCCCCHHHHHHhcCc-CcCCCceEEEEEcCCCH
Confidence 4447888999999999 99999999999988765
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=6.6e-35 Score=335.92 Aligned_cols=321 Identities=16% Similarity=0.167 Sum_probs=202.4
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc-----cCCCCeEEEecchHHHHHHH-HHHHHHHhC
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG-----YTKHGKVGCTQPRRVAAISV-AARVSREMG 79 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-----~~~~~~ilv~~P~r~la~q~-~~~v~~~~~ 79 (650)
+..++++++|.++++.+.+++++++.+|||+|||.++...+.... ...+++++|++|+++|+.|+ ++.+.+.++
T Consensus 3 ~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 3 GAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp ----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CCCCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999976665554421 11236899999999999999 999988776
Q ss_pred C--ccCcEeeeeeccc--ccCCCCceEEEEChHHHHHHHhcC-------CCCCCCceEEecccccC---CccccHHHHHH
Q 041899 80 V--KLGHEVGYSIRFE--DCTSEKTVLKYMTDGMVLREMLSD-------PKLESYSVLMVDEAHER---TLSTDILLGIF 145 (650)
Q Consensus 80 ~--~~g~~vg~~~~~~--~~~~~~~~i~~~T~~~Ll~~l~~~-------~~l~~~~~iIiDE~Her---~~~~d~ll~~l 145 (650)
. .++...|...... .......+|+|+|++.|.+.+... ..+.++++|||||||.- ......+..++
T Consensus 83 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp TTSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred cCceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 3 4443333221111 011145789999999999877432 25788999999999932 11222222222
Q ss_pred HH-HHhcC---------CCceEEEEccCCChH----------H---HHhhhCCCCccccCCc--------cccee-EEEe
Q 041899 146 KD-LVRLR---------SDLKLLISSATLDAE----------K---FSAYFNFAPILRVPGR--------RYPVE-IHYT 193 (650)
Q Consensus 146 ~~-~~~~~---------~~~kii~~SAT~~~~----------~---~~~~~~~~~~~~~~~~--------~~~v~-~~~~ 193 (650)
.. +.... +..++++||||+... . +...++...+...... ..|.. ..+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 11122 678999999999531 2 2223332121111111 01111 1111
Q ss_pred cCCC------------------------Cc-----hH-------------------------------------------
Q 041899 194 KAPE------------------------SN-----YI------------------------------------------- 201 (650)
Q Consensus 194 ~~~~------------------------~~-----~~------------------------------------------- 201 (650)
.... .+ |.
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00 00
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHhcCC-CCC
Q 041899 202 -------------------------------------------------------------DAAIVTTLEIHATQA-SGD 219 (650)
Q Consensus 202 -------------------------------------------------------------~~~~~~~~~~~~~~~-~~~ 219 (650)
......+.......+ +++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 000001111122223 789
Q ss_pred EEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCC--------CCHHHHhhhcCCCCCCCcEEEEeCCCccccCc
Q 041899 220 ILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYAN--------LPTELQAKIFVPTPDGARKVVLATNIAETSLT 291 (650)
Q Consensus 220 iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~--------l~~~~r~~i~~~~~~g~~kilvaT~i~e~gid 291 (650)
+|||++++..++.+++.|.+. ..+ ...++.+..+||+ |+.++|.++++.|++|+.+|||||+++++|||
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~-~~l--~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITEN-EKF--AEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSS-CSC--C-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred EEEEECcHHHHHHHHHHHHhC-ccc--cccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 999999999999999998753 000 1125778899999 99999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeC
Q 041899 292 IDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYT 348 (650)
Q Consensus 292 ip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~ 348 (650)
+|++++||+ ++.|.|..+|.||+|||||.| +.++.+++
T Consensus 480 ip~v~~VI~------------------~d~p~s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 480 IKECNIVIR------------------YGLVTNEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp CCSCCCCEE------------------ESCCCCHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred cccCCEEEE------------------eCCCCCHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 999999998 445889999999999988765 44444433
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.3e-33 Score=325.13 Aligned_cols=325 Identities=15% Similarity=0.150 Sum_probs=180.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC----CCeEEEecchHHHHHHHHHHHHHHh---CC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK----HGKVGCTQPRRVAAISVAARVSREM---GV 80 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~~~~v~~~~---~~ 80 (650)
...++++|.++++.+.+++++++++|||||||.++...+....... +++++|++|+++|+.|+++.+.+.+ +.
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCc
Confidence 4458899999999999999999999999999966655555432221 5699999999999999999987765 44
Q ss_pred ccCcEeeeeecccc--cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhc-----
Q 041899 81 KLGHEVGYSIRFED--CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRL----- 151 (650)
Q Consensus 81 ~~g~~vg~~~~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----- 151 (650)
.++...|....... ......+|+|+|++.|.+.+.... .+.++++|||||||...... ....++..+...
T Consensus 326 ~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i~~~~~~~~~~~~ 404 (797)
T 4a2q_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSA 404 (797)
T ss_dssp CEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHHHHHHHHHHHTTC
T ss_pred eEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHHHHHHHHHhhccC
Confidence 44333332111000 011357899999999999887654 57889999999999533332 344444444332
Q ss_pred CCCceEEEEccCCCh----------HHHH---hhhCCCCccccCCc--------cccee-EEEecC-CCC----------
Q 041899 152 RSDLKLLISSATLDA----------EKFS---AYFNFAPILRVPGR--------RYPVE-IHYTKA-PES---------- 198 (650)
Q Consensus 152 ~~~~kii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~--------~~~v~-~~~~~~-~~~---------- 198 (650)
.+..++++||||+.. +.+. ..++...+...... ..|.. ...... ...
T Consensus 405 ~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 484 (797)
T 4a2q_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLM 484 (797)
T ss_dssp CCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHH
Confidence 567899999999931 1222 22221111110000 00000 000000 000
Q ss_pred -------------------------c-----hH-----------------------------------------------
Q 041899 199 -------------------------N-----YI----------------------------------------------- 201 (650)
Q Consensus 199 -------------------------~-----~~----------------------------------------------- 201 (650)
. +.
T Consensus 485 ~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 564 (797)
T 4a2q_A 485 SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARI 564 (797)
T ss_dssp HHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccH
Confidence 0 00
Q ss_pred -----------------------------------------------HHHHHHHHHH----HhcCCCCCEEEEeCCHHHH
Q 041899 202 -----------------------------------------------DAAIVTTLEI----HATQASGDILVFLTGQEEI 230 (650)
Q Consensus 202 -----------------------------------------------~~~~~~~~~~----~~~~~~~~iLVF~~~~~~i 230 (650)
...+..+..+ ....+++++||||+++..+
T Consensus 565 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~ 644 (797)
T 4a2q_A 565 IDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALV 644 (797)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHH
Confidence 0000011111 1224568999999999999
Q ss_pred HHHHHHHHHHHHhhcC---CCCceEEEeecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCccccCcCCCeEEEEeCCcccc
Q 041899 231 ETVEEILKERIRKLGT---KIGELIVCPVYANLPTELQAKIFVPTPD-GARKVVLATNIAETSLTIDGIKYVVDSGYSKM 306 (650)
Q Consensus 231 ~~~~~~L~~~~~~~~~---~~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~kilvaT~i~e~gidip~v~~VId~G~~k~ 306 (650)
+.++..|.+.....+. ...+.....+||+|+..+|..+++.|++ |..+|||||+++++|||+|++++||+
T Consensus 645 ~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~------ 718 (797)
T 4a2q_A 645 SALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL------ 718 (797)
T ss_dssp HHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE------
T ss_pred HHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE------
Confidence 9999998752100000 0013445567999999999999999999 99999999999999999999999998
Q ss_pred eeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCcccc
Q 041899 307 KWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSY 352 (650)
Q Consensus 307 ~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~ 352 (650)
++.|.|..+|+||+|| ||..+|.||.|+++.+.
T Consensus 719 ------------yd~p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 719 ------------YEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp ------------ESCCSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred ------------eCCCCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 4458999999999999 99999999999988765
No 43
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=4.3e-32 Score=319.16 Aligned_cols=325 Identities=14% Similarity=0.141 Sum_probs=181.5
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCC----CCeEEEecchHHHHHHHHHHHHHHh---CC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTK----HGKVGCTQPRRVAAISVAARVSREM---GV 80 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~----~~~ilv~~P~r~la~q~~~~v~~~~---~~ 80 (650)
...++++|.++++.+.+++++++.+|||||||.++...+....... +++++|++|+++|+.|+++.+.+.+ +.
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 4568899999999999999999999999999977766666543222 5689999999999999999987765 44
Q ss_pred ccCcEeeeeecccc--cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhc-----
Q 041899 81 KLGHEVGYSIRFED--CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRL----- 151 (650)
Q Consensus 81 ~~g~~vg~~~~~~~--~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~----- 151 (650)
.++...|....... ......+|+|+|+++|.+.+.... .+.++++|||||||..... .....++..+...
T Consensus 326 ~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~-~~~~~i~~~~~~~~~~~~ 404 (936)
T 4a2w_A 326 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQKFNSA 404 (936)
T ss_dssp CEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT-CHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC-ccHHHHHHHHHHHhhccC
Confidence 44333332110000 011246899999999999887654 4788999999999943333 2344444444332
Q ss_pred CCCceEEEEccCCCh----------HHHH---hhhCCCCccccCCc---------ccceeE-EEecCCCC----------
Q 041899 152 RSDLKLLISSATLDA----------EKFS---AYFNFAPILRVPGR---------RYPVEI-HYTKAPES---------- 198 (650)
Q Consensus 152 ~~~~kii~~SAT~~~----------~~~~---~~~~~~~~~~~~~~---------~~~v~~-~~~~~~~~---------- 198 (650)
.+..++++||||+.. +.+. ..++. ..+..... ..|... ........
T Consensus 405 ~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~-~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l 483 (936)
T 4a2w_A 405 SQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDI-QAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNL 483 (936)
T ss_dssp SCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTC-SEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHH
T ss_pred CCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCC-ceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHH
Confidence 567899999999931 1111 12221 11111000 000000 00000000
Q ss_pred --------------------------c-----hH----------------------------------------------
Q 041899 199 --------------------------N-----YI---------------------------------------------- 201 (650)
Q Consensus 199 --------------------------~-----~~---------------------------------------------- 201 (650)
. ++
T Consensus 484 ~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~ 563 (936)
T 4a2w_A 484 MSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDAR 563 (936)
T ss_dssp HHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 0 00
Q ss_pred ------------------------------------------------HHHHHHHHHHHh----cCCCCCEEEEeCCHHH
Q 041899 202 ------------------------------------------------DAAIVTTLEIHA----TQASGDILVFLTGQEE 229 (650)
Q Consensus 202 ------------------------------------------------~~~~~~~~~~~~----~~~~~~iLVF~~~~~~ 229 (650)
...+..+.++.. ..+++++|||++++..
T Consensus 564 ~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ 643 (936)
T 4a2w_A 564 IIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRAL 643 (936)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHH
Confidence 000001111111 1346899999999999
Q ss_pred HHHHHHHHHHHHHhhcCC---CCceEEEeecCCCCHHHHhhhcCCCCC-CCcEEEEeCCCccccCcCCCeEEEEeCCccc
Q 041899 230 IETVEEILKERIRKLGTK---IGELIVCPVYANLPTELQAKIFVPTPD-GARKVVLATNIAETSLTIDGIKYVVDSGYSK 305 (650)
Q Consensus 230 i~~~~~~L~~~~~~~~~~---~~~~~v~~lh~~l~~~~r~~i~~~~~~-g~~kilvaT~i~e~gidip~v~~VId~G~~k 305 (650)
++.++..|.+.....+.. ..+.....+||+|+..+|.++++.|++ |..+|||||+++++|||+|++++||+
T Consensus 644 ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----- 718 (936)
T 4a2w_A 644 VSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----- 718 (936)
T ss_dssp HHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE-----
T ss_pred HHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE-----
Confidence 999999998631000000 113345567999999999999999998 99999999999999999999999998
Q ss_pred ceeccCCCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccccc
Q 041899 306 MKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINSYQ 353 (650)
Q Consensus 306 ~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~~~ 353 (650)
++.|.|..+|+||+|| ||..+|.||.|+++.+..
T Consensus 719 -------------yD~p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 -------------YEYSGNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp -------------ESCCSCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred -------------eCCCCCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 4448899999999999 999999999999887653
No 44
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.98 E-value=1.3e-31 Score=319.29 Aligned_cols=300 Identities=18% Similarity=0.182 Sum_probs=217.0
Q ss_pred CCchHHHHHHHHHHHc----CC--eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 9 LPIYHYREQVLRAVQE----NQ--VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~----~~--~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
...+++|.++++.+.+ ++ +++++||||+|||.++..+++.. ...+++++|++|+++|+.|+++++.+.++. .
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~-~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~-~ 679 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA-VDNHKQVAVLVPTTLLAQQHYDNFRDRFAN-W 679 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHH-HTTTCEEEEECSSHHHHHHHHHHHHHHSTT-T
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHH-HHhCCeEEEEechHHHHHHHHHHHHHHhhc-C
Confidence 3459999999998765 55 89999999999997665554433 234669999999999999999999876642 2
Q ss_pred CcEeeeeecccc----------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 83 GHEVGYSIRFED----------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 83 g~~vg~~~~~~~----------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
+..++...++.. ......+|+++|++.+. .+..+.++++|||||+|..+.. ....+...+
T Consensus 680 ~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~~~~~~~l~lvIiDEaH~~g~~------~~~~l~~l~ 749 (1151)
T 2eyq_A 680 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----SDVKFKDLGLLIVDEEHRFGVR------HKERIKAMR 749 (1151)
T ss_dssp TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----SCCCCSSEEEEEEESGGGSCHH------HHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----CCccccccceEEEechHhcChH------HHHHHHHhc
Confidence 333443222211 11235789999998653 4456889999999999953322 122223345
Q ss_pred CCceEEEEccCCChHHHHhhhCCCC---ccc-cCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 153 SDLKLLISSATLDAEKFSAYFNFAP---ILR-VPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 153 ~~~kii~~SAT~~~~~~~~~~~~~~---~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
++.++++||||+.+..+...+.+.. ++. .+....++..++........ ...+.... ..+++++|||++++
T Consensus 750 ~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i----~~~il~~l--~~g~qvlvf~~~v~ 823 (1151)
T 2eyq_A 750 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV----REAILREI--LRGGQVYYLYNDVE 823 (1151)
T ss_dssp TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHH----HHHHHHHH--TTTCEEEEECCCSS
T ss_pred CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHH----HHHHHHHH--hcCCeEEEEECCHH
Confidence 6789999999997766655543321 111 12233455555544332111 12222222 34789999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCccccee
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKW 308 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~ 308 (650)
+++.+++.|.+.. ++..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||..+
T Consensus 824 ~~~~l~~~L~~~~-------p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~------ 890 (1151)
T 2eyq_A 824 NIQKAAERLAELV-------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER------ 890 (1151)
T ss_dssp CHHHHHHHHHHHC-------TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETT------
T ss_pred HHHHHHHHHHHhC-------CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeC------
Confidence 9999999998763 367789999999999999999999999999999999999999999999999621
Q ss_pred ccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcc
Q 041899 309 YNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTIN 350 (650)
Q Consensus 309 ~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~ 350 (650)
+ .+.+.+++.||+||+||.| +|.||.+++..
T Consensus 891 --~---------~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 891 --A---------DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp --T---------TSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred --C---------CCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 1 1356788999999999988 79999998764
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.98 E-value=4.1e-33 Score=317.77 Aligned_cols=301 Identities=17% Similarity=0.246 Sum_probs=205.6
Q ss_pred CCCchHHHHHHHHHHHcC------CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 8 TLPIYHYREQVLRAVQEN------QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~------~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
...++++|.++++.+.++ .+++++||||||||..+..+++.. ..++.++++++|+++||.|+++++.+.++ .
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~-l~~g~qvlvlaPtr~La~Q~~~~l~~~~~-~ 443 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDN-YEAGFQTAFMVPTSILAIQHYRRTVESFS-K 443 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHH-HHHTSCEEEECSCHHHHHHHHHHHHHHHT-C
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeCcHHHHHHHHHHHHHHhh-h
Confidence 446899999999988764 589999999999997777766654 23456899999999999999999987663 2
Q ss_pred cCcEeeeeecccc----------cCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc
Q 041899 82 LGHEVGYSIRFED----------CTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL 151 (650)
Q Consensus 82 ~g~~vg~~~~~~~----------~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~ 151 (650)
.|..++....... ......+|+++|++.+.. +..+.++++|||||+|..+.... ..+...
T Consensus 444 ~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~qr------~~l~~~ 513 (780)
T 1gm5_A 444 FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQR------EALMNK 513 (780)
T ss_dssp SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC-----------CCCCSS
T ss_pred cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHHH------HHHHHh
Confidence 2333332222211 112357899999997743 45688999999999995432211 111123
Q ss_pred CCCceEEEEccCCChHHHHh-hhCCCCcccc---CCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCH
Q 041899 152 RSDLKLLISSATLDAEKFSA-YFNFAPILRV---PGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQ 227 (650)
Q Consensus 152 ~~~~kii~~SAT~~~~~~~~-~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~ 227 (650)
..+.++++||||+.++.+.. +++...+..+ +....++...+.... ........+.+. ...+++++||||..
T Consensus 514 ~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~l~~~i~~~--l~~g~qvlVf~~~i 588 (780)
T 1gm5_A 514 GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMD---RVNEVYEFVRQE--VMRGGQAFIVYPLI 588 (780)
T ss_dssp SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSS---THHHHHHHHHHH--TTTSCCBCCBCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccc---hHHHHHHHHHHH--HhcCCcEEEEecch
Confidence 35689999999997776654 3443332222 222335554443322 222222222222 13468899999977
Q ss_pred HHH--------HHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEE
Q 041899 228 EEI--------ETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVV 299 (650)
Q Consensus 228 ~~i--------~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VI 299 (650)
++. +.+++.|.+ ...++..+..+||+|+.++|.++++.|++|+.+|||||+++++|+|+|++++||
T Consensus 589 e~se~l~~~~a~~l~~~L~~------~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 589 EESDKLNVKSAVEMYEYLSK------EVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp --------CHHHHHHHSGGG------SCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHh------hhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 654 333333332 022467788999999999999999999999999999999999999999999999
Q ss_pred eCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeC
Q 041899 300 DSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYT 348 (650)
Q Consensus 300 d~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~ 348 (650)
+. |+. ..+.+++.||+||+||.| +|.||.+++
T Consensus 663 i~--------d~~---------r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 663 IE--------NPE---------RFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp BC--------SCS---------SSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred Ee--------CCC---------CCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 83 221 135678999999999988 799999987
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.3e-31 Score=317.39 Aligned_cols=342 Identities=16% Similarity=0.149 Sum_probs=224.0
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
....++++|.++++.+.++++++++||||||||+.+...+... ...+++++|++|+++|+.|+++++.+ ++ ..+..+
T Consensus 75 ~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~-~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v 151 (1104)
T 4ddu_A 75 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWL-ARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKI 151 (1104)
T ss_dssp SSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHH-HTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCE
T ss_pred cCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeE
Confidence 3457889999999999999999999999999997443333332 34567999999999999999999977 55 444455
Q ss_pred eeeeccccc----------CCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccc---cHHHH-------HHH
Q 041899 87 GYSIRFEDC----------TSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLST---DILLG-------IFK 146 (650)
Q Consensus 87 g~~~~~~~~----------~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~---d~ll~-------~l~ 146 (650)
+......+. .....+|+++||+.|++.+.. ..+.++++|||||||.-.... |-++. .+.
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~ 230 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIR 230 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHH
Confidence 544333222 113478999999999776543 346789999999999311111 22221 122
Q ss_pred HHHh-cC-----------CCceEEEEccCCChH-----HHHhhhCCCCccccCCcccceeEEEecCCCCchHHHHHHHHH
Q 041899 147 DLVR-LR-----------SDLKLLISSATLDAE-----KFSAYFNFAPILRVPGRRYPVEIHYTKAPESNYIDAAIVTTL 209 (650)
Q Consensus 147 ~~~~-~~-----------~~~kii~~SAT~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 209 (650)
.+.. .. ++.++++||||+.++ .+..++. ..+.........+...+........+ .
T Consensus 231 ~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-i~v~~~~~~~~~i~~~~~~~~k~~~L-------~ 302 (1104)
T 4ddu_A 231 KAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKL-------V 302 (1104)
T ss_dssp HHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-CCCCBCCCCCCCEEEEEESCCCHHHH-------H
T ss_pred HHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-EEeccCCCCcCCceeEEEecCHHHHH-------H
Confidence 2222 22 678999999996332 2333332 11111112223355555554222211 1
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEE-eecCCCCHHHHhhhcCCCCCCCcEEEEe----CC
Q 041899 210 EIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVC-PVYANLPTELQAKIFVPTPDGARKVVLA----TN 284 (650)
Q Consensus 210 ~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~-~lh~~l~~~~r~~i~~~~~~g~~kilva----T~ 284 (650)
.+... .++++||||++++.++.++..|... ++.+. .+|| +|++ ++.|++|+.+|||| |+
T Consensus 303 ~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~---------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 303 ELLEI-FRDGILIFAQTEEEGKELYEYLKRF---------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp HHHHH-HCSSEEEEESSSHHHHHHHHHHHHT---------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred HHHHh-cCCCEEEEECcHHHHHHHHHHHHhC---------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCC
Confidence 22221 2589999999999999999999874 67777 8998 2555 89999999999999 99
Q ss_pred CccccCcCCC-eEEEEeCCcccce-----eccCCCCcc------------------------------------------
Q 041899 285 IAETSLTIDG-IKYVVDSGYSKMK-----WYNPKTGME------------------------------------------ 316 (650)
Q Consensus 285 i~e~gidip~-v~~VId~G~~k~~-----~~d~~~~~~------------------------------------------ 316 (650)
++++|||+|+ |++||++|+.+.+ .++|..++.
T Consensus 367 vlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~ 446 (1104)
T 4ddu_A 367 KLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFR 446 (1104)
T ss_dssp HHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_pred eeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccc
Confidence 9999999999 9999999887711 111111111
Q ss_pred -------cceeeecCHHhHHhhccccCCCC-----CcEEEEeeCccccccc----c---CCCCCccccccChhHHHHHH
Q 041899 317 -------SLLVYPISKASAMQRAGRSGRTG-----PGKCFRLYTINSYQED----M---EDNTVPEIQRTNLANVILIL 376 (650)
Q Consensus 317 -------~l~~~~~s~~~~~Qr~GRaGR~~-----~G~~~~l~~~~~~~~~----~---~~~~~pei~r~~l~~~~L~l 376 (650)
.++....+..+|+||+||+||.+ .|..+.+.+.....+. + .+....++...++++++-.+
T Consensus 447 ~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i 525 (1104)
T 4ddu_A 447 GVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEV 525 (1104)
T ss_dssp SSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHHHHHH
T ss_pred eEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHhhhcccccccccccCHHHHHHHH
Confidence 11222347889999999999965 4677888754432211 1 23344444456666665544
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=1.3e-31 Score=293.95 Aligned_cols=295 Identities=17% Similarity=0.156 Sum_probs=206.1
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc-cCcEe
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK-LGHEV 86 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~-~g~~v 86 (650)
.++++++|.++++.+.+++++++++|||+|||.++..++... +++++|++|+++|+.|+++++.+ ++.. ++...
T Consensus 91 ~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~~ 165 (472)
T 2fwr_A 91 EISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFS 165 (472)
T ss_dssp CCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEBS
T ss_pred CCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEEC
Confidence 457999999999999999999999999999998776666654 56899999999999999999977 6544 33222
Q ss_pred eeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCCh
Q 041899 87 GYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLDA 166 (650)
Q Consensus 87 g~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~~ 166 (650)
| ......+|+++|++.+...+.. ...++++|||||+|. .....+ +.+....+..++++||||+..
T Consensus 166 g-------~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~liIvDEaH~-~~~~~~-----~~~~~~~~~~~~l~lSATp~~ 230 (472)
T 2fwr_A 166 G-------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHH-LPAESY-----VQIAQMSIAPFRLGLTATFER 230 (472)
T ss_dssp S-------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEETGGG-TTSTTT-----HHHHHTCCCSEEEEEESCCCC
T ss_pred C-------CcCCcCCEEEEEcHHHHHHHHH--hcCCCCEEEEECCcC-CCChHH-----HHHHHhcCCCeEEEEecCccC
Confidence 2 1223578999999998765431 124689999999994 333222 223344567889999999941
Q ss_pred -----HHHHhhhCCC----CccccCCc-ccceeE--EEecCC--------------------------------------
Q 041899 167 -----EKFSAYFNFA----PILRVPGR-RYPVEI--HYTKAP-------------------------------------- 196 (650)
Q Consensus 167 -----~~~~~~~~~~----~~~~~~~~-~~~v~~--~~~~~~-------------------------------------- 196 (650)
..+..+++.. ....+... ..+... ......
T Consensus 231 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 310 (472)
T 2fwr_A 231 EDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310 (472)
T ss_dssp TTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTT
T ss_pred CCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHh
Confidence 1344444320 01111000 000000 000000
Q ss_pred ----C--CchH------------HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecC
Q 041899 197 ----E--SNYI------------DAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYA 258 (650)
Q Consensus 197 ----~--~~~~------------~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~ 258 (650)
. .... ......+.++.....++++||||++.+.++.+++.|. +..+||
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g 376 (472)
T 2fwr_A 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------------IPAITH 376 (472)
T ss_dssp CCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCS
T ss_pred ccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------------cceeeC
Confidence 0 0000 0112233334444567899999999999998887662 345899
Q ss_pred CCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCC
Q 041899 259 NLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRT 338 (650)
Q Consensus 259 ~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~ 338 (650)
+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+ .+.|.|...+.||+||+||.
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~------------------~~~~~s~~~~~Q~~GR~~R~ 438 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI------------------MSGSGSAREYIQRLGRILRP 438 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE------------------ECCSSCCHHHHHHHHHSBCC
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE------------------ECCCCCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999998 44478899999999999999
Q ss_pred CCc----EEEEeeCcccccc
Q 041899 339 GPG----KCFRLYTINSYQE 354 (650)
Q Consensus 339 ~~G----~~~~l~~~~~~~~ 354 (650)
|+| .+|.++++...++
T Consensus 439 g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 439 SKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp CTTTCCEEEEEEEECSCC--
T ss_pred CCCCceEEEEEEEeCCCchH
Confidence 977 4666777655443
No 48
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=1.5e-31 Score=296.44 Aligned_cols=302 Identities=14% Similarity=0.118 Sum_probs=201.9
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
..++++|.++++.+.+++++++++|||+|||.++..++.......+++++|++|+++|+.|+++++.+ ++...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v~~ 190 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD-YRLFSHAMIKK 190 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGEEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHH-hhcCCccceEE
Confidence 47899999999999888999999999999997775555543223345999999999999999999954 43333323332
Q ss_pred eeccccc---CCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 89 SIRFEDC---TSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 89 ~~~~~~~---~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
..+.... .....+|+++|++.+.+. ....+.++++|||||+|... . . .+..++. ..+..++++||||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~-~-~----~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT-G-K----SISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC-H-H----HHHHHGGGCTTCCEEEEEESCG
T ss_pred EecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC-c-c----cHHHHHHhcccCcEEEEEEeCC
Confidence 2222211 125689999999976542 11357889999999999432 2 1 1233333 44677999999999
Q ss_pred ChH-----HHHhhhCCCCccccCC-------cccceeEE--EecCCC--------CchHH------------HHHHHHHH
Q 041899 165 DAE-----KFSAYFNFAPILRVPG-------RRYPVEIH--YTKAPE--------SNYID------------AAIVTTLE 210 (650)
Q Consensus 165 ~~~-----~~~~~~~~~~~~~~~~-------~~~~v~~~--~~~~~~--------~~~~~------------~~~~~~~~ 210 (650)
... .+..+++. .+..++. ...+..+. ....+. ..+.. ..+...+.
T Consensus 263 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 341 (510)
T 2oca_A 263 RDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAI 341 (510)
T ss_dssp GGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHH
Confidence 322 23334442 2222221 11111111 111110 11111 01111111
Q ss_pred HHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeC-CCcccc
Q 041899 211 IHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLAT-NIAETS 289 (650)
Q Consensus 211 ~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT-~i~e~g 289 (650)
......+..++||++ .++++.+++.|.+. +..+..+||+++.++|.++++.|++|+.+||||| +++++|
T Consensus 342 ~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~---------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~G 411 (510)
T 2oca_A 342 KLAQKDENAFVMFKH-VSHGKAIFDLIKNE---------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTG 411 (510)
T ss_dssp HHHTTTCEEEEEESS-HHHHHHHHHHHHTT---------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHS
T ss_pred HHHhcCCCeEEEEec-HHHHHHHHHHHHHc---------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcc
Confidence 122223445666666 88888888777653 2368889999999999999999999999999999 999999
Q ss_pred CcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCcE-EEEeeC
Q 041899 290 LTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPGK-CFRLYT 348 (650)
Q Consensus 290 idip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~-~~~l~~ 348 (650)
+|+|++++||. .+.+.|..++.||+||+||.|+|. ++.+|+
T Consensus 412 iDip~v~~vi~------------------~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 412 ISVKNLHHVVL------------------AHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CCCCSEEEEEE------------------SSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred cccccCcEEEE------------------eCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999998 334678899999999999999764 666665
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=9.1e-31 Score=310.43 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=173.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc---
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH--- 84 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~--- 84 (650)
.++. ++|.++++.+.++++++++||||||||+ +.+.++......+.+++|++|+++|+.|+++++.+.... .+.
T Consensus 55 g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~-~~i~~~ 131 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEK-AGVGTE 131 (1054)
T ss_dssp CSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTT-TCCSGG
T ss_pred CCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhh-cCCCcc
Confidence 3445 9999999999999999999999999995 333333333345679999999999999999999765432 222
Q ss_pred -Eeeeeeccc---------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHH-----
Q 041899 85 -EVGYSIRFE---------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLV----- 149 (650)
Q Consensus 85 -~vg~~~~~~---------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~----- 149 (650)
.++...... ..... .+|+++||+.|++.+.. +.++++|||||+|...-....+..+++.+-
T Consensus 132 ~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~ 207 (1054)
T 1gku_B 132 NLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDL 207 (1054)
T ss_dssp GSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEET
T ss_pred ceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHHHHHHhCcchhh
Confidence 233222111 11122 78999999999986644 779999999999942111222222232221
Q ss_pred ---hcCCCceEEEEccCCChH-HHH-hhhCCCCccccCCcc---cceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEE
Q 041899 150 ---RLRSDLKLLISSATLDAE-KFS-AYFNFAPILRVPGRR---YPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDIL 221 (650)
Q Consensus 150 ---~~~~~~kii~~SAT~~~~-~~~-~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL 221 (650)
....+.+++++|||+... .+. .++.....+.+.... ..+...+......+.+. .+.... ++++|
T Consensus 208 ~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~k~~~L~-------~ll~~~-~~~~L 279 (1054)
T 1gku_B 208 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDESISTLS-------SILEKL-GTGGI 279 (1054)
T ss_dssp TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCCCTTTTH-------HHHTTS-CSCEE
T ss_pred hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEechhHHHHHH-------HHHhhc-CCCEE
Confidence 012456789999998432 111 222211112222221 23555555432222222 222222 67899
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEe----CCCccccCcCCCe-E
Q 041899 222 VFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLA----TNIAETSLTIDGI-K 296 (650)
Q Consensus 222 VF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilva----T~i~e~gidip~v-~ 296 (650)
|||+++.+++.+++.|.+. +.+..+||++. ++++.|++|+.+|||| |+++++|||+|+| +
T Consensus 280 VF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~ 344 (1054)
T 1gku_B 280 IYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIR 344 (1054)
T ss_dssp EEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTCC
T ss_pred EEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCccc
Confidence 9999999999999887541 56889999983 5667789999999999 9999999999995 9
Q ss_pred EEEeCCcc
Q 041899 297 YVVDSGYS 304 (650)
Q Consensus 297 ~VId~G~~ 304 (650)
+||+.|..
T Consensus 345 ~VI~~~~P 352 (1054)
T 1gku_B 345 FAVFVGCP 352 (1054)
T ss_dssp EEEEESCC
T ss_pred EEEEeCCC
Confidence 99999887
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.96 E-value=7.1e-29 Score=279.68 Aligned_cols=301 Identities=15% Similarity=0.126 Sum_probs=181.0
Q ss_pred CCchHHHHHHHHHHHc-----CCeEEEEcCCCChHHHHHHHHHHhccc-C-------CCCeEEEecchHHHHHHHH-HHH
Q 041899 9 LPIYHYREQVLRAVQE-----NQVVVIVGETGSGKTTQIPQYLHEAGY-T-------KHGKVGCTQPRRVAAISVA-ARV 74 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~-----~~~vii~apTGsGKT~~ip~~l~~~~~-~-------~~~~ilv~~P~r~la~q~~-~~v 74 (650)
..++++|.++++.+.+ ++++++++|||||||.++..++..... . .+++++|++|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4689999999998764 577999999999999665444433211 1 3569999999999999988 444
Q ss_pred HHHhCCccCcEeeeeecccccCCCCceEEEEChHHHHHHHhc-----CCCCCCCceEEecccccCCccccHHHHHHHHHH
Q 041899 75 SREMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMVLREMLS-----DPKLESYSVLMVDEAHERTLSTDILLGIFKDLV 149 (650)
Q Consensus 75 ~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~-----~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~ 149 (650)
+.++.. ++... ........+|+++|++.|...... ......+++||+|||| |....+ ...++.+.
T Consensus 257 -~~~~~~----~~~~~--~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH-~~~~~~--~~~~~~il 326 (590)
T 3h1t_A 257 -TPFGDA----RHKIE--GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECH-RGSARD--NSNWREIL 326 (590)
T ss_dssp -TTTCSS----EEECC--C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC------------CHHHH
T ss_pred -Hhcchh----hhhhh--ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCc-cccccc--hHHHHHHH
Confidence 233332 22111 122345678999999998775431 2235678999999999 443321 12233444
Q ss_pred hcCCCceEEEEccCCC---hHHHHhhhCCCCccccC-------CcccceeEEEecCC-----------------------
Q 041899 150 RLRSDLKLLISSATLD---AEKFSAYFNFAPILRVP-------GRRYPVEIHYTKAP----------------------- 196 (650)
Q Consensus 150 ~~~~~~kii~~SAT~~---~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~----------------------- 196 (650)
...+..++++||||+. ......+|+. ++.... +...|.........
T Consensus 327 ~~~~~~~~l~lTATP~~~~~~~~~~~f~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (590)
T 3h1t_A 327 EYFEPAFQIGMTATPLREDNRDTYRYFGN-PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDG 405 (590)
T ss_dssp HHSTTSEEEEEESSCSCTTTHHHHHHSCS-CSEEECHHHHHHHTSSCCEEEEEEEETTCC--------------------
T ss_pred HhCCcceEEEeccccccccchhHHHHcCC-ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccc
Confidence 4445678999999983 3456677763 222110 11112111111000
Q ss_pred ---CCch---------HHHHHHHHHHHH-hcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHH
Q 041899 197 ---ESNY---------IDAAIVTTLEIH-ATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTE 263 (650)
Q Consensus 197 ---~~~~---------~~~~~~~~~~~~-~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~ 263 (650)
..+. .......+.... ...+.+++||||+++.+++.+++.|.+......... .-.+..+||+++ +
T Consensus 406 ~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~-~ 483 (590)
T 3h1t_A 406 EYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEEG-K 483 (590)
T ss_dssp ---CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTH-H
T ss_pred cCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCCh-H
Confidence 0000 011111222212 224468999999999999999999987644322111 123667899875 3
Q ss_pred HHhhhcCCCCCCCcE---EEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC
Q 041899 264 LQAKIFVPTPDGARK---VVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP 340 (650)
Q Consensus 264 ~r~~i~~~~~~g~~k---ilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~ 340 (650)
+|+++++.|++|+.+ |++||+++++|+|+|++++||. .+.+.|...|.||+||+||.++
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~------------------~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL------------------ARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE------------------ESCCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE------------------EecCCChHHHHHHHhhhcccCc
Confidence 688999999988766 8999999999999999999997 4557899999999999999885
No 51
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=242.57 Aligned_cols=178 Identities=38% Similarity=0.667 Sum_probs=159.5
Q ss_pred hHhhhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCC----CeEEEecchHHHHHHHHHHHHHH
Q 041899 2 LQKERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKH----GKVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 2 l~~~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~----~~ilv~~P~r~la~q~~~~v~~~ 77 (650)
+.+.|..+|++++|+++++.+.++++++++||||||||++++.++++.....+ .++++++|+++++.|++++++..
T Consensus 53 ~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 53 ILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp HHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999888876533322 38999999999999999999999
Q ss_pred hCCccCcEeeeeecccccCC-CCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce
Q 041899 78 MGVKLGHEVGYSIRFEDCTS-EKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 78 ~~~~~g~~vg~~~~~~~~~~-~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 156 (650)
++..+|..+||.++++.... ..++|+++|+|+|++.+.. .+.++++||+||+|+|+.+.++.+..++.+....++.+
T Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 133 RGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp TTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred hccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 99999999999998887765 6789999999999998876 48999999999999989999999999999988888999
Q ss_pred EEEEccCCChHHHHhhhCCCCcccc
Q 041899 157 LLISSATLDAEKFSAYFNFAPILRV 181 (650)
Q Consensus 157 ii~~SAT~~~~~~~~~~~~~~~~~~ 181 (650)
+++||||++.+.+++||+++|++.+
T Consensus 211 ~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 211 IVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp EEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred EEEEecCCCHHHHHHHcCCCCEEeC
Confidence 9999999998889999999988753
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.95 E-value=1.2e-27 Score=267.63 Aligned_cols=302 Identities=20% Similarity=0.227 Sum_probs=196.9
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.+-.++.|...+..+.+|+ |..++||+||| +.+|.++.. + .+..++|+.|+|.||.|.++.+.... ...|..
T Consensus 81 G~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~a--L-~g~~vlVltptreLA~qd~e~~~~l~-~~lgl~ 154 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNA--L-TGKGVHVVTVNEYLASRDAEQMGKIF-EFLGLT 154 (844)
T ss_dssp SCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHH--T-TSSCEEEEESSHHHHHHHHHHHHHHH-HHTTCC
T ss_pred CCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHH--H-cCCCEEEEeCCHHHHHHHHHHHHHHH-hhcCCe
Confidence 3467899999999999998 99999999999 555555432 2 24579999999999999987775532 223344
Q ss_pred eeeeecccc----cCCCCceEEEEChHHH-HHHHhc-------CCCCCCCceEEecccccCCccc---------------
Q 041899 86 VGYSIRFED----CTSEKTVLKYMTDGMV-LREMLS-------DPKLESYSVLMVDEAHERTLST--------------- 138 (650)
Q Consensus 86 vg~~~~~~~----~~~~~~~i~~~T~~~L-l~~l~~-------~~~l~~~~~iIiDE~Her~~~~--------------- 138 (650)
+|....+.+ ......+|+|+|||.| +..+.. ...++++.++||||||..-++.
T Consensus 155 v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 155 VGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 443222211 1112468999999998 433332 2357889999999999311111
Q ss_pred cHHHHHHHHHHh-cC---------CCceEE-----------------EEccCCCh--H----------------------
Q 041899 139 DILLGIFKDLVR-LR---------SDLKLL-----------------ISSATLDA--E---------------------- 167 (650)
Q Consensus 139 d~ll~~l~~~~~-~~---------~~~kii-----------------~~SAT~~~--~---------------------- 167 (650)
++ ...+..+.. .. ++.++. ++|||... .
T Consensus 235 ~~-~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~d 313 (844)
T 1tf5_A 235 KL-YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVED 313 (844)
T ss_dssp HH-HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEET
T ss_pred hH-HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEec
Confidence 12 222333332 21 123343 56666421 1
Q ss_pred ---------------------------------------------------------------------HHHhhhCCCCc
Q 041899 168 ---------------------------------------------------------------------KFSAYFNFAPI 178 (650)
Q Consensus 168 ---------------------------------------------------------------------~~~~~~~~~~~ 178 (650)
.|.+.++ ..+
T Consensus 314 g~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~-l~v 392 (844)
T 1tf5_A 314 GQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN-MQV 392 (844)
T ss_dssp TEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHC-CCE
T ss_pred CeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhC-Cce
Confidence 1111111 111
Q ss_pred cccCCcccce------eEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceE
Q 041899 179 LRVPGRRYPV------EIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELI 252 (650)
Q Consensus 179 ~~~~~~~~~v------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ 252 (650)
+.+|... |+ ...|. ...+.....+..+...+ ..+.++||||+|++.++.++..|.+. ++.
T Consensus 393 v~IPtn~-p~~r~d~~d~v~~--~~~~K~~al~~~i~~~~--~~~~pvLVft~s~~~se~Ls~~L~~~---------gi~ 458 (844)
T 1tf5_A 393 VTIPTNR-PVVRDDRPDLIYR--TMEGKFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNK---------GIP 458 (844)
T ss_dssp EECCCSS-CCCCEECCCEEES--SHHHHHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTT---------TCC
T ss_pred EEecCCC-CcccccCCcEEEe--CHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCC
Confidence 1111100 00 01111 11122222222222222 23678999999999999999999875 777
Q ss_pred EEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC--------CeEEEEeCCcccceeccCCCCcccceeeecC
Q 041899 253 VCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID--------GIKYVVDSGYSKMKWYNPKTGMESLLVYPIS 324 (650)
Q Consensus 253 v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip--------~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s 324 (650)
+..+||++...++..+.+.++.| .|+||||+|++|+||+ ++.+||+ ++.|.|
T Consensus 459 ~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn------------------~d~p~s 518 (844)
T 1tf5_A 459 HQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG------------------TERHES 518 (844)
T ss_dssp CEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE------------------SSCCSS
T ss_pred EEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE------------------ecCCCC
Confidence 88999999888888777777666 5999999999999999 8999999 555899
Q ss_pred HHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 325 KASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 325 ~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
...|.||+||+||.| +|.++.+++.++
T Consensus 519 ~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 519 RRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999 899999888655
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.94 E-value=2.9e-26 Score=255.75 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=95.2
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCC-
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDG- 294 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~- 294 (650)
.+.++||||+|++.++.++..|.+. ++....+||.....++..+.++++.| .|+||||+|++|+||+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~---------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~ 508 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKA---------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLG 508 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHT---------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTT
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC---------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCC
Confidence 4678999999999999999999875 77788899999888888888999988 59999999999999997
Q ss_pred -------------------------------e-----EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCC
Q 041899 295 -------------------------------I-----KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRT 338 (650)
Q Consensus 295 -------------------------------v-----~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~ 338 (650)
| .+||+ ++.|.|...|.||+||+||.
T Consensus 509 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~------------------te~pes~riy~qr~GRTGRq 570 (853)
T 2fsf_A 509 GSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG------------------TERHESRRIDNQLRGRSGRQ 570 (853)
T ss_dssp CCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE------------------SSCCSSHHHHHHHHTTSSGG
T ss_pred CchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE------------------ccCCCCHHHHHhhccccccC
Confidence 3 69998 45589999999999999999
Q ss_pred C-CcEEEEeeCccc
Q 041899 339 G-PGKCFRLYTINS 351 (650)
Q Consensus 339 ~-~G~~~~l~~~~~ 351 (650)
| ||.+..+.+.++
T Consensus 571 Gd~G~s~~fls~eD 584 (853)
T 2fsf_A 571 GDAGSSRFYLSMED 584 (853)
T ss_dssp GCCEEEEEEEETTS
T ss_pred CCCeeEEEEecccH
Confidence 9 899988887665
No 54
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.94 E-value=9.8e-26 Score=251.65 Aligned_cols=306 Identities=20% Similarity=0.176 Sum_probs=199.3
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHH--HHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKT--TQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT--~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
.+-.++.|...+..+.+|+ |..++||+||| +.+|.++.. + .+..++|+.|++.||.|.++.+...+ ..+|..
T Consensus 109 G~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~a--L-~g~~v~VvTpTreLA~Qdae~m~~l~-~~lGLs 182 (922)
T 1nkt_A 109 DQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNA--L-AGNGVHIVTVNDYLAKRDSEWMGRVH-RFLGLQ 182 (922)
T ss_dssp SCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHH--T-TTSCEEEEESSHHHHHHHHHHHHHHH-HHTTCC
T ss_pred CCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHH--H-hCCCeEEEeCCHHHHHHHHHHHHHHH-hhcCCe
Confidence 4567899999999999887 99999999999 445554432 2 24579999999999999887775532 223444
Q ss_pred eeeeecccc----cCCCCceEEEEChHHH-HHHHhc-------CCCCCCCceEEecccccCCc-c---------------
Q 041899 86 VGYSIRFED----CTSEKTVLKYMTDGMV-LREMLS-------DPKLESYSVLMVDEAHERTL-S--------------- 137 (650)
Q Consensus 86 vg~~~~~~~----~~~~~~~i~~~T~~~L-l~~l~~-------~~~l~~~~~iIiDE~Her~~-~--------------- 137 (650)
+|......+ ......+|+|+||+.| +..|.. ...++++.++||||||. .+ +
T Consensus 183 v~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs-mLiDeartPLiiSg~~~~~ 261 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS-ILIDEARTPLIISGPADGA 261 (922)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH-HHTTGGGSCEEEEEECCCC
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH-HHHhcCccceeecCCCCcc
Confidence 443322211 1112468999999998 444433 23578899999999992 22 1
Q ss_pred ccHHHHHHHHHHhcC---------CCceEE-----------------EEccCCCh--HHHHh------hhC--------C
Q 041899 138 TDILLGIFKDLVRLR---------SDLKLL-----------------ISSATLDA--EKFSA------YFN--------F 175 (650)
Q Consensus 138 ~d~ll~~l~~~~~~~---------~~~kii-----------------~~SAT~~~--~~~~~------~~~--------~ 175 (650)
+++...+-+.+.... ++.++. +.|||... ..+.. +|. +
T Consensus 262 ~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~d 341 (922)
T 1nkt_A 262 SNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRD 341 (922)
T ss_dssp HHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECS
T ss_pred hhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeec
Confidence 223333322222233 345666 77888631 22211 111 0
Q ss_pred CCcccc--------CCcc--------------------------------------------------------cceeEE
Q 041899 176 APILRV--------PGRR--------------------------------------------------------YPVEIH 191 (650)
Q Consensus 176 ~~~~~~--------~~~~--------------------------------------------------------~~v~~~ 191 (650)
..++.+ +|+. |.+.+.
T Consensus 342 g~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv 421 (922)
T 1nkt_A 342 GEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVV 421 (922)
T ss_dssp SCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEE
T ss_pred CceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeE
Confidence 011101 0110 001111
Q ss_pred EecC---------------CCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEee
Q 041899 192 YTKA---------------PESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPV 256 (650)
Q Consensus 192 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~l 256 (650)
..+. ...+.....+..+...+ ..+.++|||++|++.++.++..|.+. ++.+..+
T Consensus 422 ~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~~---------Gi~~~vL 490 (922)
T 1nkt_A 422 SIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKR---------RIPHNVL 490 (922)
T ss_dssp ECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHT---------TCCCEEE
T ss_pred EeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHHC---------CCCEEEe
Confidence 1111 01111222222222222 23568999999999999999999875 7778889
Q ss_pred cCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCe-----------------------------------------
Q 041899 257 YANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGI----------------------------------------- 295 (650)
Q Consensus 257 h~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v----------------------------------------- 295 (650)
||.....++..+.++++.| .|+||||+|++|+||+.+
T Consensus 491 nak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEAS 568 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9998888887788888887 699999999999999974
Q ss_pred -----------EEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 296 -----------KYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 296 -----------~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
.+||+ ++.|.|...|.||+||+||.| ||.+..+.+.++
T Consensus 569 ~~~~~V~~~GGlhVI~------------------te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 569 KEAKEVIEAGGLYVLG------------------TERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp HHHHHHHHTTSEEEEE------------------CSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred HhhhHHHhcCCcEEEe------------------ccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 58998 555899999999999999999 899888887654
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.93 E-value=8.1e-26 Score=266.22 Aligned_cols=313 Identities=15% Similarity=0.125 Sum_probs=203.0
Q ss_pred CCchHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcE
Q 041899 9 LPIYHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHE 85 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~ 85 (650)
..+++||.+++..+.. +..+++.++||+|||.++..++..... ...++++|++|+ .|+.|..+.+.+.++.++...
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 5689999999988765 458999999999999776555544322 223489999999 999999999988887665432
Q ss_pred eeeeec----ccccCCCCceEEEEChHHHHHHHhcC--CCCCCCceEEecccccCCcc---ccHHHHHHHHHHhcCCCce
Q 041899 86 VGYSIR----FEDCTSEKTVLKYMTDGMVLREMLSD--PKLESYSVLMVDEAHERTLS---TDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 86 vg~~~~----~~~~~~~~~~i~~~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~---~d~ll~~l~~~~~~~~~~k 156 (650)
.|.... .........+|+++|++.+.+..... -...++++|||||+|.-... .......++.+.. ...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~--~~~~ 308 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE--HVPG 308 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT--TCSS
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh--cCCc
Confidence 221100 00122245689999999885421100 02347899999999942211 1122333443322 3346
Q ss_pred EEEEccCCC---hHH---HHhhhCCC-----------------------------C-----------cc---------c-
Q 041899 157 LLISSATLD---AEK---FSAYFNFA-----------------------------P-----------IL---------R- 180 (650)
Q Consensus 157 ii~~SAT~~---~~~---~~~~~~~~-----------------------------~-----------~~---------~- 180 (650)
+++||||+- ... +-.++... + .+ .
T Consensus 309 ~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~ 388 (968)
T 3dmq_A 309 VLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQA 388 (968)
T ss_dssp EEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGG
T ss_pred EEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhc
Confidence 999999982 111 11111000 0 00 0
Q ss_pred c----------------------------------CCccccee---EEEecCCC--------------------------
Q 041899 181 V----------------------------------PGRRYPVE---IHYTKAPE-------------------------- 197 (650)
Q Consensus 181 ~----------------------------------~~~~~~v~---~~~~~~~~-------------------------- 197 (650)
. ....+|.. ......+.
T Consensus 389 ~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 468 (968)
T 3dmq_A 389 ANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDML 468 (968)
T ss_dssp TCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHH
T ss_pred ccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhc
Confidence 0 00001100 00000000
Q ss_pred ---------------CchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCH
Q 041899 198 ---------------SNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPT 262 (650)
Q Consensus 198 ---------------~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~ 262 (650)
..........+..+....+++++||||+++..++.++..|.+. .++.+..+||+|+.
T Consensus 469 ~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--------~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 469 YPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--------EGIRAAVFHEGMSI 540 (968)
T ss_dssp CSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--------TCCCEEEECTTSCT
T ss_pred ChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--------cCCcEEEEeCCCCH
Confidence 0000112333444444456889999999999999999998753 16778999999999
Q ss_pred HHHhhhcCCCCCCC--cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC
Q 041899 263 ELQAKIFVPTPDGA--RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP 340 (650)
Q Consensus 263 ~~r~~i~~~~~~g~--~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~ 340 (650)
.+|.++++.|++|+ .+|||||+++++|+|+|++++||+ ++.|.+...|.||+||+||.|.
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~------------------~d~p~~~~~~~Q~~GR~~R~Gq 602 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM------------------FDLPFNPDLLEQRIGRLDRIGQ 602 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC------------------SSCCSSHHHHHHHHHTTSCSSS
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE------------------ecCCCCHHHHHHHhhccccCCC
Confidence 99999999999998 999999999999999999999998 4457899999999999999984
Q ss_pred -c--EEEEeeCcc
Q 041899 341 -G--KCFRLYTIN 350 (650)
Q Consensus 341 -G--~~~~l~~~~ 350 (650)
| .+|.++.+.
T Consensus 603 ~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 603 AHDIQIHVPYLEK 615 (968)
T ss_dssp CSCCEEEEEEETT
T ss_pred CceEEEEEecCCC
Confidence 4 344444443
No 56
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2.9e-25 Score=216.08 Aligned_cols=172 Identities=19% Similarity=0.274 Sum_probs=146.4
Q ss_pred HHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCc
Q 041899 207 TTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIA 286 (650)
Q Consensus 207 ~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~ 286 (650)
.+..+....+++++||||+++.+++.+++.|.+. ++.+..+||+|+.++|.++++.|++|.++|||||+++
T Consensus 21 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~ 91 (212)
T 3eaq_A 21 VLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVA 91 (212)
T ss_dssp HHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH---------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTT
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChh
Confidence 3344444455789999999999999999999876 6789999999999999999999999999999999999
Q ss_pred cccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc-------------
Q 041899 287 ETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY------------- 352 (650)
Q Consensus 287 e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~------------- 352 (650)
++|+|+|++++||+++. |.+..+|.||+||+||.| +|.|+.+|++.+.
T Consensus 92 ~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 153 (212)
T 3eaq_A 92 ARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRR 153 (212)
T ss_dssp TCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSC
T ss_pred hcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCc
Confidence 99999999999999543 789999999999999998 8999999998761
Q ss_pred ccccCCCCCccccccChhHHHHHHHhcCCCCCCCC-----CCCCCChHHHHHHHHHHH
Q 041899 353 QEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNF-----DFLDSPPQELLRKALELL 405 (650)
Q Consensus 353 ~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~i~~a~~~L 405 (650)
...+.....||+.+..+..+++.++.++..+...| +++++|+++.+..|+..|
T Consensus 154 ~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 154 FKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp CEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 13456667788999999999999998876555455 567888889998888765
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.91 E-value=1.2e-23 Score=245.91 Aligned_cols=305 Identities=12% Similarity=0.043 Sum_probs=196.0
Q ss_pred CCchHHHHHHHHHHHc--------------CCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHH
Q 041899 9 LPIYHYREQVLRAVQE--------------NQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAA 72 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~--------------~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~ 72 (650)
..++++|.++++.+.+ +++.+++++||||||..+. .+..... ....+++|++||++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~-~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSF-KAARLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHH-HHHHHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHH-HHHHHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 3478999999998754 3679999999999995542 2222211 123599999999999999998
Q ss_pred HHHHHhCCccCcEeeeeecc--cccCCCCceEEEEChHHHHHHHhcC---CCCCCCceEEecccccCCccccHHHHHHHH
Q 041899 73 RVSREMGVKLGHEVGYSIRF--EDCTSEKTVLKYMTDGMVLREMLSD---PKLESYSVLMVDEAHERTLSTDILLGIFKD 147 (650)
Q Consensus 73 ~v~~~~~~~~g~~vg~~~~~--~~~~~~~~~i~~~T~~~Ll~~l~~~---~~l~~~~~iIiDE~Her~~~~d~ll~~l~~ 147 (650)
.+.......+.. +..... .........|+++|++.|...+... +.+....+||+|||| |+...+. .+.
T Consensus 349 ~f~~f~~~~v~~--~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAH-rs~~~~~----~~~ 421 (1038)
T 2w00_A 349 EYQRFSPDSVNG--SENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECH-RSQFGEA----QKN 421 (1038)
T ss_dssp HHHTTSTTCSSS--SCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCC-TTHHHHH----HHH
T ss_pred HHHHhccccccc--ccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccc-hhcchHH----HHH
Confidence 885532211110 111000 0011345789999999998866433 245678999999999 6654433 334
Q ss_pred HHhcCCCceEEEEccCCCh-------HHHHhhhCCCCcccc-------CCcccceeEEEecCCC---------C------
Q 041899 148 LVRLRSDLKLLISSATLDA-------EKFSAYFNFAPILRV-------PGRRYPVEIHYTKAPE---------S------ 198 (650)
Q Consensus 148 ~~~~~~~~kii~~SAT~~~-------~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~---------~------ 198 (650)
+....++.++++||||+.. ....++||.. +... +|...|+.+.|..... .
T Consensus 422 I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~-i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~ 500 (1038)
T 2w00_A 422 LKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRE-LHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSA 500 (1038)
T ss_dssp HHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE-EEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHH
T ss_pred HHHhCCcccEEEEeCCccccccchhhhHHHHHhCCe-eEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHH
Confidence 4445677899999999932 2456677642 1111 2334455555543110 0
Q ss_pred ----------chHHHHHHHHHHHHhc--------CCCCCEEEEeCCHHHHHHHHHHHHHHHHhh---cCCCCceEE-Eee
Q 041899 199 ----------NYIDAAIVTTLEIHAT--------QASGDILVFLTGQEEIETVEEILKERIRKL---GTKIGELIV-CPV 256 (650)
Q Consensus 199 ----------~~~~~~~~~~~~~~~~--------~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~---~~~~~~~~v-~~l 256 (650)
+.+......++..... ..++++||||+++..+..+++.|.+..... .+...+..+ ..+
T Consensus 501 i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~ 580 (1038)
T 2w00_A 501 AENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIF 580 (1038)
T ss_dssp TCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEEC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEE
Confidence 0011112222221111 124579999999999999999998865332 011112333 344
Q ss_pred cCC----------C----------CHH-----------------------------HHhhhcCCCCCCCcEEEEeCCCcc
Q 041899 257 YAN----------L----------PTE-----------------------------LQAKIFVPTPDGARKVVLATNIAE 287 (650)
Q Consensus 257 h~~----------l----------~~~-----------------------------~r~~i~~~~~~g~~kilvaT~i~e 287 (650)
|++ + +.. +|..+.+.|++|..+|||+|+++.
T Consensus 581 s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ll 660 (1038)
T 2w00_A 581 SFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFL 660 (1038)
T ss_dssp CCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTS
T ss_pred eCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHH
Confidence 542 2 221 367788889999999999999999
Q ss_pred ccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCCc
Q 041899 288 TSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGPG 341 (650)
Q Consensus 288 ~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G 341 (650)
+|+|+|.+.+++ .+.|.+...++||+||+||.+++
T Consensus 661 tGfDiP~l~tly-------------------lDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 661 TGFDAPTLNTLF-------------------VDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp SSCCCTTEEEEE-------------------EESCCCHHHHHHHHHTTCCCCCT
T ss_pred hCcCcccccEEE-------------------EccCCCccceeehhhccCcCCCC
Confidence 999999996544 55688999999999999999863
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.91 E-value=1e-23 Score=232.83 Aligned_cols=308 Identities=15% Similarity=0.175 Sum_probs=189.0
Q ss_pred CchHHHHHHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHhccc-CCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 10 PIYHYREQVLRAV----QENQVVVIVGETGSGKTTQIPQYLHEAGY-TKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 10 pl~~~q~~~l~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~~-~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
.+++||.+.++.+ ..+..+|+..+||+|||.++..++..... ...++++|++|. .++.|..+.+.+... ..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~-~~-- 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAP-HL-- 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT-TS--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCC-Cc--
Confidence 4899999998876 45778999999999999765554443321 223589999995 578898888866432 11
Q ss_pred Eee-eeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 85 EVG-YSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 85 ~vg-~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
.+. +.-..........+|+++|++.+.+... ....++++||+||+|.-....... .+.+... +..+.+++|||
T Consensus 113 ~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~---~~~l~~l-~~~~~l~LTaT 186 (500)
T 1z63_A 113 RFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKI---FKAVKEL-KSKYRIALTGT 186 (500)
T ss_dssp CEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHH---HHHHHTS-CEEEEEEECSS
T ss_pred eEEEEecCchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHH---HHHHHhh-ccCcEEEEecC
Confidence 111 1110111112356799999998865322 113468999999999421111111 1222222 34578999999
Q ss_pred C---ChHHHHh---hhCC--------------------------------CCccccCC-------ccccee---EEEecC
Q 041899 164 L---DAEKFSA---YFNF--------------------------------APILRVPG-------RRYPVE---IHYTKA 195 (650)
Q Consensus 164 ~---~~~~~~~---~~~~--------------------------------~~~~~~~~-------~~~~v~---~~~~~~ 195 (650)
+ +...+.. |+.. .+++.... ...|.. ..+...
T Consensus 187 P~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l 266 (500)
T 1z63_A 187 PIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNL 266 (500)
T ss_dssp CSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECC
T ss_pred CCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCC
Confidence 9 2222211 1110 01110000 011111 111111
Q ss_pred CCCc--hHH-------------------------------------------------HHHHHHHHHHh--cCCCCCEEE
Q 041899 196 PESN--YID-------------------------------------------------AAIVTTLEIHA--TQASGDILV 222 (650)
Q Consensus 196 ~~~~--~~~-------------------------------------------------~~~~~~~~~~~--~~~~~~iLV 222 (650)
.... ... .....+.++.. ..++.++||
T Consensus 267 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lv 346 (500)
T 1z63_A 267 TPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAI 346 (500)
T ss_dssp CHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEE
Confidence 1000 000 00011111111 124679999
Q ss_pred EeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCccccCcCCCeEEEEe
Q 041899 223 FLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-ARK-VVLATNIAETSLTIDGIKYVVD 300 (650)
Q Consensus 223 F~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~k-ilvaT~i~e~gidip~v~~VId 300 (650)
|+.....++.++..|.+.. +..+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++||.
T Consensus 347 F~~~~~~~~~l~~~l~~~~--------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~ 418 (500)
T 1z63_A 347 FTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH 418 (500)
T ss_dssp ECSCHHHHHHHHHHHHHHH--------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE
T ss_pred EEehHHHHHHHHHHHHHhh--------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE
Confidence 9999999999999987642 45577789999999999999999887 454 8999999999999999999998
Q ss_pred CCcccceeccCCCCcccceeeecCHHhHHhhccccCCCCC---cEEEEeeCccccc
Q 041899 301 SGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTGP---GKCFRLYTINSYQ 353 (650)
Q Consensus 301 ~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~~ 353 (650)
.+.|.++..+.||+||++|.|. ..+|+++++...+
T Consensus 419 ------------------~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tie 456 (500)
T 1z63_A 419 ------------------FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 456 (500)
T ss_dssp ------------------SSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHH
T ss_pred ------------------eCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHH
Confidence 4457888999999999999994 3467777765543
No 59
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=8.9e-25 Score=222.72 Aligned_cols=191 Identities=18% Similarity=0.272 Sum_probs=155.5
Q ss_pred eeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhh
Q 041899 188 VEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAK 267 (650)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 267 (650)
++.++...+..+..+. +..+.....++++||||+++.+++.++..|.+. ++.+.++||+|++.+|.+
T Consensus 3 v~~~~i~~~~~~K~~~----L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~---------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEV----LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL---------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp SEEEEEECCSSSHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT---------TCCEEEECSCCCTHHHHH
T ss_pred eEEEEEECCHHHHHHH----HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHH
Confidence 4555666665554443 333333344889999999999999999998764 678999999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEe
Q 041899 268 IFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRL 346 (650)
Q Consensus 268 i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 346 (650)
+++.|++|.++|||||+++++|+|+|++++||++++ |.+..+|.||+||+||.| +|.||.+
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l 131 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLL 131 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEE
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEE
Confidence 999999999999999999999999999999999543 788999999999999998 8999999
Q ss_pred eCccc--------------cccccCCCCCccccccChhHHHHHHHhcCCCCCCCC-----CCCCCChHHHHHHHHHHHHH
Q 041899 347 YTINS--------------YQEDMEDNTVPEIQRTNLANVILILKNLGIDDLLNF-----DFLDSPPQELLRKALELLYA 407 (650)
Q Consensus 347 ~~~~~--------------~~~~~~~~~~pei~r~~l~~~~L~l~~~~~~~~~~~-----~~~~~p~~~~i~~a~~~L~~ 407 (650)
|++.+ + ..+.....|||.+..+..+++.++.++..+...| +++++|+.+.+..|+..|..
T Consensus 132 ~~~~e~~~~~~ie~~~~~~~-~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~ 210 (300)
T 3i32_A 132 YGPRERRDVEALERAVGRRF-KRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLG 210 (300)
T ss_dssp ECSSTHHHHHHHHHHHTCCC-EECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred eChHHHHHHHHHHHHhCCcc-eEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhc
Confidence 98876 3 3466777889999999999999998776555555 56778999999999999976
Q ss_pred cCC
Q 041899 408 LGA 410 (650)
Q Consensus 408 ~g~ 410 (650)
...
T Consensus 211 ~~~ 213 (300)
T 3i32_A 211 GAP 213 (300)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.5e-20 Score=212.82 Aligned_cols=309 Identities=15% Similarity=0.134 Sum_probs=196.3
Q ss_pred CchHHHHHHHHHHH---------cCCeEEEEcCCCChHHHHHHHHHHhcccC------CCCeEEEecchHHHHHHHHHHH
Q 041899 10 PIYHYREQVLRAVQ---------ENQVVVIVGETGSGKTTQIPQYLHEAGYT------KHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 10 pl~~~q~~~l~~l~---------~~~~vii~apTGsGKT~~ip~~l~~~~~~------~~~~ilv~~P~r~la~q~~~~v 74 (650)
.+++||.+.+..+. .+...|+..+||+|||.++..++...... ..++++|++|+ .++.|..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 47899999999873 45679999999999997765555432111 12369999997 7788888888
Q ss_pred HHHhCCccCcEeeeeecc--c-----------ccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccH-
Q 041899 75 SREMGVKLGHEVGYSIRF--E-----------DCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDI- 140 (650)
Q Consensus 75 ~~~~~~~~g~~vg~~~~~--~-----------~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~- 140 (650)
.+..+..+. .+.+.... . ........|+++|++.+.+... ...-.++++||+||+|. .-+...
T Consensus 134 ~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-~l~~~~~~~vI~DEaH~-ikn~~~~ 210 (644)
T 1z3i_X 134 GKWLGGRVQ-PVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-VLHKGKVGLVICDEGHR-LKNSDNQ 210 (644)
T ss_dssp HHHHGGGCC-EEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-TTTTSCCCEEEETTGGG-CCTTCHH
T ss_pred HHHcCCCee-EEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-HhhcCCccEEEEECcee-cCChhhH
Confidence 776543221 11111000 0 0011246799999999876431 11235689999999993 322221
Q ss_pred HHHHHHHHHhcCCCceEEEEccCCChH---------------------HHHhhhCC---------C--------------
Q 041899 141 LLGIFKDLVRLRSDLKLLISSATLDAE---------------------KFSAYFNF---------A-------------- 176 (650)
Q Consensus 141 ll~~l~~~~~~~~~~kii~~SAT~~~~---------------------~~~~~~~~---------~-------------- 176 (650)
....++. . ...+.++||||+-.+ .|.++|.. .
T Consensus 211 ~~~al~~---l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 211 TYLALNS---M-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp HHHHHHH---H-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHh---c-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 1112222 2 345789999998211 12222210 0
Q ss_pred ------Cccc-----cCCcccceeE---EEecCCCC---------------------c----------------------
Q 041899 177 ------PILR-----VPGRRYPVEI---HYTKAPES---------------------N---------------------- 199 (650)
Q Consensus 177 ------~~~~-----~~~~~~~v~~---~~~~~~~~---------------------~---------------------- 199 (650)
|.+. .-....|.+. .+...... .
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 0000 0000112111 11111000 0
Q ss_pred --------------------------------hHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCC
Q 041899 200 --------------------------------YIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTK 247 (650)
Q Consensus 200 --------------------------------~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~ 247 (650)
.....+..++......++.++|||+.....++.+...|...
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~------- 439 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR------- 439 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH-------
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC-------
Confidence 00001111222222234679999999999999999988765
Q ss_pred CCceEEEeecCCCCHHHHhhhcCCCCCCCc---EEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecC
Q 041899 248 IGELIVCPVYANLPTELQAKIFVPTPDGAR---KVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPIS 324 (650)
Q Consensus 248 ~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~---kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s 324 (650)
++.+..+||+++.++|.++++.|++|.. .+|++|.+++.|+|++++++||. ++.|-+
T Consensus 440 --g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~------------------~d~~wn 499 (644)
T 1z3i_X 440 --RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM------------------FDPDWN 499 (644)
T ss_dssp --TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE------------------CSCCSS
T ss_pred --CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE------------------ECCCCC
Confidence 6778899999999999999999988764 58999999999999999999998 555889
Q ss_pred HHhHHhhccccCCCCC---cEEEEeeCccccc
Q 041899 325 KASAMQRAGRSGRTGP---GKCFRLYTINSYQ 353 (650)
Q Consensus 325 ~~~~~Qr~GRaGR~~~---G~~~~l~~~~~~~ 353 (650)
++.+.|+.||++|.|. ..+|++++....+
T Consensus 500 p~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiE 531 (644)
T 1z3i_X 500 PANDEQAMARVWRDGQKKTCYIYRLLSTGTIE 531 (644)
T ss_dssp HHHHHHHHTTSSSTTCCSCEEEEEEEETTSHH
T ss_pred ccHHHHHHHhhhhcCCCCceEEEEEEECCCHH
Confidence 9999999999999994 4678887766543
No 61
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.87 E-value=3e-21 Score=211.05 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=117.6
Q ss_pred eEEEEccCC--ChHHHHhhhCCCCccccCCccc--cee---EEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHH
Q 041899 156 KLLISSATL--DAEKFSAYFNFAPILRVPGRRY--PVE---IHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQE 228 (650)
Q Consensus 156 kii~~SAT~--~~~~~~~~~~~~~~~~~~~~~~--~v~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~ 228 (650)
++.+||+|+ ..+.|.+.++ ..++.+|.... ..+ ..|. ...+.....+..+...+. .+.++|||+++++
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~-l~vv~IPtnkp~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~--~gqpVLVFt~S~e 485 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG-MEVVVIPTHKPMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYK--KGQPVLVGTTSIE 485 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC-CCEEECCCSSCCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEEEESSHH
T ss_pred HHeEECCCCchHHHHHHHHhC-CeEEEECCCCCcceeecCcEEEe--cHHHHHHHHHHHHHHHhh--CCCCEEEEECCHH
Confidence 688899998 3456666664 45666654321 111 1221 222333333333433332 2678999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCC--------CeEEEEe
Q 041899 229 EIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTID--------GIKYVVD 300 (650)
Q Consensus 229 ~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip--------~v~~VId 300 (650)
.++.+++.|.+. ++....+||+....++..+...++.| .|+||||+|++|+||+ +..+||+
T Consensus 486 ~sE~Ls~~L~~~---------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn 554 (822)
T 3jux_A 486 KSELLSSMLKKK---------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG 554 (822)
T ss_dssp HHHHHHHHHHTT---------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHHC---------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe
Confidence 999999999864 67788899997666666555566555 5999999999999998 6779998
Q ss_pred CCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCccc
Q 041899 301 SGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINS 351 (650)
Q Consensus 301 ~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~ 351 (650)
...|.|...|.||+||+||.| +|.++.+++.++
T Consensus 555 ------------------te~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 555 ------------------TERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp ------------------SSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred ------------------cCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 455899999999999999999 899999888765
No 62
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.86 E-value=1.3e-20 Score=213.29 Aligned_cols=170 Identities=18% Similarity=0.145 Sum_probs=122.1
Q ss_pred CceEEEEccCCChHHHHhhhCC--CCccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 154 DLKLLISSATLDAEKFSAYFNF--APILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 154 ~~kii~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
..+++++|||+....+.. -+. ...+...+...|. +... +........+..+.... ..++++||||+++..++
T Consensus 380 ~~q~i~~SAT~~~~~~~~-~~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae 453 (664)
T 1c4o_A 380 VSQVVFVSATPGPFELAH-SGRVVEQIIRPTGLLDPL-VRVK--PTENQILDLMEGIRERA--ARGERTLVTVLTVRMAE 453 (664)
T ss_dssp CSEEEEEESSCCHHHHHH-CSEEEEECSCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--HTTCEEEEECSSHHHHH
T ss_pred cCCEEEEecCCCHHHHHh-hhCeeeeeeccCCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCEEEEEECCHHHHH
Confidence 568999999997554432 000 0001111222222 1111 11223333333332222 23679999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 232 TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
.+++.|.+. ++.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||+++..+
T Consensus 454 ~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~------ 518 (664)
T 1c4o_A 454 ELTSFLVEH---------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADK------ 518 (664)
T ss_dssp HHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTS------
T ss_pred HHHHHHHhc---------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcc------
Confidence 999999875 66788899999999999999999999999999999999999999999999854311
Q ss_pred CCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccc
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINS 351 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 351 (650)
...|.|..+|+||+|||||.++|.|+.+++..+
T Consensus 519 -------~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 551 (664)
T 1c4o_A 519 -------EGFLRSERSLIQTIGRAARNARGEVWLYADRVS 551 (664)
T ss_dssp -------CSGGGSHHHHHHHHGGGTTSTTCEEEEECSSCC
T ss_pred -------cCCCCCHHHHHHHHCccCcCCCCEEEEEEcCCC
Confidence 122679999999999999999999999987653
No 63
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5e-21 Score=222.16 Aligned_cols=312 Identities=13% Similarity=0.143 Sum_probs=197.2
Q ss_pred CCchHHHHHHHHHHH----cCCeEEEEcCCCChHHHHHHHHHHhc--ccCCCCeEEEecchHHHHHHHHHHHHHHh-CCc
Q 041899 9 LPIYHYREQVLRAVQ----ENQVVVIVGETGSGKTTQIPQYLHEA--GYTKHGKVGCTQPRRVAAISVAARVSREM-GVK 81 (650)
Q Consensus 9 lpl~~~q~~~l~~l~----~~~~vii~apTGsGKT~~ip~~l~~~--~~~~~~~ilv~~P~r~la~q~~~~v~~~~-~~~ 81 (650)
..+++||.+.++.+. .+...|+..+||+|||.++..++... .....+.++|++| ..++.|..+.+.+.. +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 468999999998765 78899999999999997665554322 1233568999999 667788888886654 222
Q ss_pred cCcEeeeee-c---------c----cccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccC-CccccHHHHHHH
Q 041899 82 LGHEVGYSI-R---------F----EDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHER-TLSTDILLGIFK 146 (650)
Q Consensus 82 ~g~~vg~~~-~---------~----~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her-~~~~d~ll~~l~ 146 (650)
+....|-.. + . ........+|+++|++++.+....- ...++++|||||+|.- +..+.. ...++
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l-~~~~w~~vIvDEaH~lkn~~s~~-~~~l~ 391 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL-GSIKWQFMAVDEAHRLKNAESSL-YESLN 391 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH-HTSEEEEEEETTGGGGCCSSSHH-HHHHT
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH-hcCCcceeehhhhhhhcCchhHH-HHHHH
Confidence 211112100 0 0 0012345679999999987632211 1235799999999932 222222 11221
Q ss_pred HHHhcCCCceEEEEccCC---ChHHHHh---hhCCC-----------------------------CccccC-----Cccc
Q 041899 147 DLVRLRSDLKLLISSATL---DAEKFSA---YFNFA-----------------------------PILRVP-----GRRY 186 (650)
Q Consensus 147 ~~~~~~~~~kii~~SAT~---~~~~~~~---~~~~~-----------------------------~~~~~~-----~~~~ 186 (650)
.. .....++||||+ +...+-. |+... |++... ....
T Consensus 392 ---~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 392 ---SF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp ---TS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred ---Hh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 12 334578999999 3333322 22110 000000 0001
Q ss_pred ce---eEEEecCCCC--chH------------------------------------------------------------
Q 041899 187 PV---EIHYTKAPES--NYI------------------------------------------------------------ 201 (650)
Q Consensus 187 ~v---~~~~~~~~~~--~~~------------------------------------------------------------ 201 (650)
|- .+.+...... .+.
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 11 1111111000 000
Q ss_pred -H------HHHHHHHHHH--hcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCC
Q 041899 202 -D------AAIVTTLEIH--ATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPT 272 (650)
Q Consensus 202 -~------~~~~~~~~~~--~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~ 272 (650)
. ..+..+.++. ....+.++|||+.....+..+...|... ++.+..+||+++..+|.++++.|
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~---------g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK---------GINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH---------TCCCEEESTTSCHHHHHHHHHTT
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC---------CCCEEEEeCCCCHHHHHHHHHHh
Confidence 0 0001111111 1234679999999999999999998765 67788899999999999999999
Q ss_pred CCCC---cEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEe
Q 041899 273 PDGA---RKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRL 346 (650)
Q Consensus 273 ~~g~---~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l 346 (650)
+++. ..+|++|.+++.|+|++++++||. ++.+-++..+.||.||+.|.| +..+|+|
T Consensus 619 ~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrl 680 (800)
T 3mwy_W 619 NSPDSNDFVFLLSTRAGGLGINLMTADTVVI------------------FDSDWNPQADLQAMARAHRIGQKNHVMVYRL 680 (800)
T ss_dssp SSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE------------------SSCCSCSHHHHHHHTTTSCSSCCSCEEEEEE
T ss_pred hCCCCCceEEEEecccccCCCCccccceEEE------------------ecCCCChhhHHHHHHHHHhcCCCceEEEEEE
Confidence 8754 359999999999999999999998 445788999999999999988 4678888
Q ss_pred eCcccccc
Q 041899 347 YTINSYQE 354 (650)
Q Consensus 347 ~~~~~~~~ 354 (650)
+++...++
T Consensus 681 v~~~TiEe 688 (800)
T 3mwy_W 681 VSKDTVEE 688 (800)
T ss_dssp EETTSHHH
T ss_pred ecCCCHHH
Confidence 88776543
No 64
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.83 E-value=2.4e-19 Score=202.76 Aligned_cols=170 Identities=21% Similarity=0.182 Sum_probs=122.1
Q ss_pred CceEEEEccCCChHHHHhhhCCC--CccccCCcccceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHH
Q 041899 154 DLKLLISSATLDAEKFSAYFNFA--PILRVPGRRYPVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIE 231 (650)
Q Consensus 154 ~~kii~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~ 231 (650)
..+++++|||+....+.. -+.. ..+...+...|. +... +........+..+.... ..++++||||+++..++
T Consensus 386 ~~q~i~~SAT~~~~~~~~-~~~~~~~~~r~~~l~~p~-i~v~--~~~~~~~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae 459 (661)
T 2d7d_A 386 MHNIVYVSATPGPYEIEH-TDEMVEQIIRPTGLLDPL-IDVR--PIEGQIDDLIGEIQARI--ERNERVLVTTLTKKMSE 459 (661)
T ss_dssp CSEEEEECSSCCHHHHHH-CSSCEEECCCTTCCCCCE-EEEE--CSTTHHHHHHHHHHHHH--TTTCEEEEECSSHHHHH
T ss_pred CCCEEEEecCCChhHHHh-hhCeeeeeecccCCCCCe-EEEe--cccchHHHHHHHHHHHH--hcCCeEEEEECCHHHHH
Confidence 568999999996544332 0100 001111222232 1111 12223333333332222 24679999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccC
Q 041899 232 TVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNP 311 (650)
Q Consensus 232 ~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~ 311 (650)
.+++.|.+. ++.+..+||+++..+|.++++.|++|+.+|+|||+++++|+|+|++++||+++..+
T Consensus 460 ~L~~~L~~~---------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~------ 524 (661)
T 2d7d_A 460 DLTDYLKEI---------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK------ 524 (661)
T ss_dssp HHHHHHHHT---------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTC------
T ss_pred HHHHHHHhc---------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCccc------
Confidence 999999875 67788899999999999999999999999999999999999999999999854311
Q ss_pred CCCcccceeeecCHHhHHhhccccCCCCCcEEEEeeCccc
Q 041899 312 KTGMESLLVYPISKASAMQRAGRSGRTGPGKCFRLYTINS 351 (650)
Q Consensus 312 ~~~~~~l~~~~~s~~~~~Qr~GRaGR~~~G~~~~l~~~~~ 351 (650)
...|.|..+|+||+|||||.++|.|+.++++.+
T Consensus 525 -------~G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 525 -------EGFLRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp -------CTTTTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred -------ccCCCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 112678999999999999999999999987654
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.82 E-value=2.6e-19 Score=175.63 Aligned_cols=176 Identities=15% Similarity=0.145 Sum_probs=117.2
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
+--.++++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++.+.+.. ...+.
T Consensus 33 g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~ 111 (224)
T 1qde_A 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDI 111 (224)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCC
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh-cccCc
Confidence 334689999999999999999999999999999765555554322 234589999999999999999886643 22233
Q ss_pred Eeeeeeccc-----ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEE
Q 041899 85 EVGYSIRFE-----DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLL 158 (650)
Q Consensus 85 ~vg~~~~~~-----~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii 158 (650)
.++...... .......+|+++|++.+.+.+.... .+.++++||+|||| +....++...+.+.+....++.+++
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah-~~~~~~~~~~l~~i~~~~~~~~~~i 190 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTLLPPTTQVV 190 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHHSCTTCEEE
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh-HHhhhhhHHHHHHHHHhCCccCeEE
Confidence 222211111 1112347899999999998877654 57889999999999 3333333333333333356788999
Q ss_pred EEccCCChH--H-HHhhhCCCCccccCCc
Q 041899 159 ISSATLDAE--K-FSAYFNFAPILRVPGR 184 (650)
Q Consensus 159 ~~SAT~~~~--~-~~~~~~~~~~~~~~~~ 184 (650)
+||||++.+ . +..|+++...+.+++.
T Consensus 191 ~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 191 LLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 999999543 3 4445554444444433
No 66
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=181.19 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=118.0
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.+-..++++|.++++.+.+++++++++|||||||.++...++..... .+.+++|++|+++|+.|+++++.+.. ...+
T Consensus 61 ~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~-~~~~ 139 (249)
T 3ber_A 61 LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALG-SSIG 139 (249)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHH-GGGT
T ss_pred cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHh-ccCC
Confidence 34457899999999999999999999999999997766665543222 24479999999999999998886643 2222
Q ss_pred cEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCc
Q 041899 84 HEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 84 ~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 155 (650)
..++....... ......+|+++|++.|++.+.... .+.++++||+|||| +..+.++...+.+.+....++.
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~ 218 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEAD-RILNMDFETEVDKILKVIPRDR 218 (249)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHSSCSSS
T ss_pred eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChh-hhhccChHHHHHHHHHhCCCCC
Confidence 22332221111 112467899999999999887543 57889999999999 5444455444444444456689
Q ss_pred eEEEEccCCCh--HHHHhhh
Q 041899 156 KLLISSATLDA--EKFSAYF 173 (650)
Q Consensus 156 kii~~SAT~~~--~~~~~~~ 173 (650)
++++||||++. +.+.+.+
T Consensus 219 ~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 219 KTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp EEEEEESSCCHHHHHHHHHH
T ss_pred eEEEEeccCCHHHHHHHHHH
Confidence 99999999954 3444433
No 67
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=176.00 Aligned_cols=156 Identities=21% Similarity=0.157 Sum_probs=109.7
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--------CCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--------TKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--------~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
--..+++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++++.+...
T Consensus 40 ~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 119 (228)
T 3iuy_A 40 ILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY 119 (228)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc
Confidence 34689999999999999999999999999999544333332211 1455899999999999999999877532
Q ss_pred CccCcEeeeeeccccc------CCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 80 VKLGHEVGYSIRFEDC------TSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 80 ~~~g~~vg~~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
. +..++........ ...+.+|+++|++.+...+.... .+.++++||+|||| +....++...+.+.+...+
T Consensus 120 ~--~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~ 196 (228)
T 3iuy_A 120 K--GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEAD-KMLDMEFEPQIRKILLDVR 196 (228)
T ss_dssp T--TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHH-HHHHTTCHHHHHHHHHHSC
T ss_pred c--CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHH-HHhccchHHHHHHHHHhCC
Confidence 2 2222211111111 12346899999999998877655 58899999999999 3333344444444444466
Q ss_pred CCceEEEEccCCCh
Q 041899 153 SDLKLLISSATLDA 166 (650)
Q Consensus 153 ~~~kii~~SAT~~~ 166 (650)
++.++++||||++.
T Consensus 197 ~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 197 PDRQTVMTSATWPD 210 (228)
T ss_dssp SSCEEEEEESCCCH
T ss_pred cCCeEEEEEeeCCH
Confidence 78999999999954
No 68
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=176.46 Aligned_cols=166 Identities=21% Similarity=0.169 Sum_probs=115.2
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc------CCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY------TKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~------~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
++--.++++|.++++.+.+++++++++|||||||+.+...++.... ..+.+++|++|+++|+.|+++.+.+ ++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~ 121 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRK-VG 121 (236)
T ss_dssp TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHH-Hh
Confidence 3445689999999999999999999999999999765554443211 2355899999999999999988865 44
Q ss_pred CccCcEeeeeecccc-----cCCCCceEEEEChHHHHHHHhcC--CCCCCCceEEecccccCCccccHHHHHHHHHHhcC
Q 041899 80 VKLGHEVGYSIRFED-----CTSEKTVLKYMTDGMVLREMLSD--PKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLR 152 (650)
Q Consensus 80 ~~~g~~vg~~~~~~~-----~~~~~~~i~~~T~~~Ll~~l~~~--~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~ 152 (650)
...+..++....... ......+|+++|++.+++.+... ..+.++++||+||+| +..+.++...+.+.+....
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah-~~~~~~~~~~~~~i~~~~~ 200 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEAD-RILDMGFADTMNAVIENLP 200 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHH-HHHHTTTHHHHHHHHHTSC
T ss_pred CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChH-HHhcCCcHHHHHHHHHhCC
Confidence 333333332221111 11135789999999999887664 357889999999999 4333333333333333355
Q ss_pred CCceEEEEccCCCh--HHHHhhh
Q 041899 153 SDLKLLISSATLDA--EKFSAYF 173 (650)
Q Consensus 153 ~~~kii~~SAT~~~--~~~~~~~ 173 (650)
++.++++||||++. ..+.+.+
T Consensus 201 ~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 201 KKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHS
T ss_pred CCCeEEEEEeeCCHHHHHHHHHh
Confidence 68899999999954 3455443
No 69
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.81 E-value=7.5e-19 Score=169.98 Aligned_cols=157 Identities=17% Similarity=0.138 Sum_probs=110.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEe
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEV 86 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~v 86 (650)
-.++++|.++++.+.+++++++++|||||||..+...++.... ..+.++++++|+++|+.|+++.+.+......+..+
T Consensus 24 ~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 103 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKV 103 (206)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred CCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceE
Confidence 4689999999999999999999999999999665555554322 23458999999999999999988765432113333
Q ss_pred eeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 87 GYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 87 g~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
+....... ......+|+++|++.+.+.+.... .+.++++||+||+|. ....++...+.+.+....++.++++
T Consensus 104 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~~l~~i~~~~~~~~~~l~ 182 (206)
T 1vec_A 104 MATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK-LLSQDFVQIMEDIILTLPKNRQILL 182 (206)
T ss_dssp EEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH-HTSTTTHHHHHHHHHHSCTTCEEEE
T ss_pred EEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH-hHhhCcHHHHHHHHHhCCccceEEE
Confidence 32221111 123467899999999988877654 678999999999993 3333333332222223455899999
Q ss_pred EccCCCh
Q 041899 160 SSATLDA 166 (650)
Q Consensus 160 ~SAT~~~ 166 (650)
||||++.
T Consensus 183 ~SAT~~~ 189 (206)
T 1vec_A 183 YSATFPL 189 (206)
T ss_dssp EESCCCH
T ss_pred EEeeCCH
Confidence 9999954
No 70
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.80 E-value=4.1e-19 Score=173.70 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=111.3
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCcc-
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKL- 82 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~- 82 (650)
.+-..++++|.++++.+.+++++++++|||||||..+...++..... .+.+++|++|+++|+.|+++.+.+......
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 34456899999999999999999999999999997655555544322 345899999999999999998876543210
Q ss_pred --CcEeeeeeccc------ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCC
Q 041899 83 --GHEVGYSIRFE------DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRS 153 (650)
Q Consensus 83 --g~~vg~~~~~~------~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~ 153 (650)
+..++...... .......+|+++|++.+.+.+.... .+.++++||+||+|. .....+...+.+.+....+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~~~l~~i~~~~~~ 180 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL-MLDMGFITDVDQIAARMPK 180 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH-HHHTTCHHHHHHHHHTSCT
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchH-HhhhChHHHHHHHHHhCCc
Confidence 22222111111 1112357899999999998876644 578899999999993 2222332222222333556
Q ss_pred CceEEEEccCCCh
Q 041899 154 DLKLLISSATLDA 166 (650)
Q Consensus 154 ~~kii~~SAT~~~ 166 (650)
+.++++||||++.
T Consensus 181 ~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 181 DLQMLVFSATIPE 193 (219)
T ss_dssp TCEEEEEESCCCG
T ss_pred ccEEEEEecCCCH
Confidence 7899999999943
No 71
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.80 E-value=5.9e-19 Score=174.79 Aligned_cols=155 Identities=17% Similarity=0.189 Sum_probs=109.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++++|||||||..+...++..... .+.+++|++|+++|+.|+++.+.+ ++...+..++
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA-LGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEE
Confidence 4899999999999999999999999999997766666554322 345899999999999999988866 4333333332
Q ss_pred eeecccc-------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEE
Q 041899 88 YSIRFED-------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLI 159 (650)
Q Consensus 88 ~~~~~~~-------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~ 159 (650)
....... ......+|+++|++.|.+.+.... .+.++++||+||||. .....+...+...+....++.++++
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~~~l~~i~~~~~~~~~~i~ 209 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADE-MLSRGFKDQIYEIFQKLNTSIQVVL 209 (237)
T ss_dssp EECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHH-HHHTTCHHHHHHHHHHSCTTCEEEE
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchH-hhccCcHHHHHHHHHhCCCCCeEEE
Confidence 2221111 111237899999999998886654 578899999999993 2222232223333333567899999
Q ss_pred EccCCCh
Q 041899 160 SSATLDA 166 (650)
Q Consensus 160 ~SAT~~~ 166 (650)
||||++.
T Consensus 210 ~SAT~~~ 216 (237)
T 3bor_A 210 LSATMPT 216 (237)
T ss_dssp ECSSCCH
T ss_pred EEEecCH
Confidence 9999954
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=173.71 Aligned_cols=165 Identities=18% Similarity=0.113 Sum_probs=114.3
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
--.++++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++++.+.. ...+.
T Consensus 49 ~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~ 127 (245)
T 3dkp_A 49 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS-EGTGF 127 (245)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT-TTSCC
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh-cccCc
Confidence 34589999999999999999999999999999654444443322 234489999999999999998886643 33333
Q ss_pred Eeeeee-------cccccCCCCceEEEEChHHHHHHHhcCC---CCCCCceEEecccccCCcc--ccHHHHHHHHHHh-c
Q 041899 85 EVGYSI-------RFEDCTSEKTVLKYMTDGMVLREMLSDP---KLESYSVLMVDEAHERTLS--TDILLGIFKDLVR-L 151 (650)
Q Consensus 85 ~vg~~~-------~~~~~~~~~~~i~~~T~~~Ll~~l~~~~---~l~~~~~iIiDE~Her~~~--~d~ll~~l~~~~~-~ 151 (650)
.++... ..........+|+++|++.+...+...+ .+.++++||+||||...-. ..+...+...+.. .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~ 207 (245)
T 3dkp_A 128 RIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACT 207 (245)
T ss_dssp CEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCC
T ss_pred eEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcC
Confidence 332111 1122234567899999999999887763 5789999999999942211 2344444443333 2
Q ss_pred CCCceEEEEccCCCh--HHHHhhh
Q 041899 152 RSDLKLLISSATLDA--EKFSAYF 173 (650)
Q Consensus 152 ~~~~kii~~SAT~~~--~~~~~~~ 173 (650)
.++.++++||||++. +.+.+.+
T Consensus 208 ~~~~~~~~~SAT~~~~v~~~~~~~ 231 (245)
T 3dkp_A 208 SHKVRRAMFSATFAYDVEQWCKLN 231 (245)
T ss_dssp CTTCEEEEEESSCCHHHHHHHHHH
T ss_pred CCCcEEEEEeccCCHHHHHHHHHh
Confidence 457899999999943 3444433
No 73
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=180.47 Aligned_cols=160 Identities=20% Similarity=0.192 Sum_probs=112.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc------CCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY------TKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~------~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
++++|.++++.+..+++++++||||||||..+...++.... ..+.+++|++|+++|+.|+++.+.+.. ...+.
T Consensus 77 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~-~~~~~ 155 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM-THHVH 155 (262)
T ss_dssp CCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-TTCCS
T ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH-hhcCc
Confidence 89999999999999999999999999999654444433211 235689999999999999998886643 33344
Q ss_pred Eeeeeeccccc------CCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCce
Q 041899 85 EVGYSIRFEDC------TSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLK 156 (650)
Q Consensus 85 ~vg~~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~k 156 (650)
.++........ .....+|+++||+.+...+...+ .+.++++|||||+| +.....+...+...+....++.+
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~q 234 (262)
T 3ly5_A 156 TYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD-RILDVGFEEELKQIIKLLPTRRQ 234 (262)
T ss_dssp CEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH-HHHHTTCHHHHHHHHHHSCSSSE
T ss_pred eEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH-HHhhhhHHHHHHHHHHhCCCCCe
Confidence 34322222111 11246899999999998887654 67899999999999 43333343333333333556789
Q ss_pred EEEEccCCCh--HHHHhh
Q 041899 157 LLISSATLDA--EKFSAY 172 (650)
Q Consensus 157 ii~~SAT~~~--~~~~~~ 172 (650)
+++||||++. +.+.+.
T Consensus 235 ~l~~SAT~~~~v~~~~~~ 252 (262)
T 3ly5_A 235 TMLFSATQTRKVEDLARI 252 (262)
T ss_dssp EEEECSSCCHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHH
Confidence 9999999953 455543
No 74
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=1.6e-19 Score=167.92 Aligned_cols=135 Identities=20% Similarity=0.333 Sum_probs=113.3
Q ss_pred ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHh
Q 041899 187 PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQA 266 (650)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 266 (650)
.++.+|...+..+.... +..+....+++++||||+++.+++.+++.|.+. ++.+..+||+|+..+|.
T Consensus 9 ~i~~~~~~~~~~~K~~~----L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~ 75 (163)
T 2hjv_A 9 NIEHAVIQVREENKFSL----LKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL---------GYPCDKIHGGMIQEDRF 75 (163)
T ss_dssp CEEEEEEECCGGGHHHH----HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred cceEEEEECChHHHHHH----HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 46666666655544432 223333345789999999999999999999874 67789999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEE
Q 041899 267 KIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 267 ~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
.+++.|++|+.+|||||+++++|+|+|++++||+ ++.|.+..+|.||+||+||.| +|.|+.
T Consensus 76 ~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~------------------~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 137 (163)
T 2hjv_A 76 DVMNEFKRGEYRYLVATDVAARGIDIENISLVIN------------------YDLPLEKESYVHRTGRTGRAGNKGKAIS 137 (163)
T ss_dssp HHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE------------------SSCCSSHHHHHHHTTTSSCTTCCEEEEE
T ss_pred HHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE------------------eCCCCCHHHHHHhccccCcCCCCceEEE
Confidence 9999999999999999999999999999999998 344889999999999999998 799999
Q ss_pred eeCcccc
Q 041899 346 LYTINSY 352 (650)
Q Consensus 346 l~~~~~~ 352 (650)
++++.+.
T Consensus 138 ~~~~~~~ 144 (163)
T 2hjv_A 138 FVTAFEK 144 (163)
T ss_dssp EECGGGH
T ss_pred EecHHHH
Confidence 9987653
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.80 E-value=7.2e-19 Score=170.19 Aligned_cols=170 Identities=19% Similarity=0.124 Sum_probs=115.0
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-----CCCCeEEEecchHHHHHHHHHHHHHHhCC-
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-----TKHGKVGCTQPRRVAAISVAARVSREMGV- 80 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~ilv~~P~r~la~q~~~~v~~~~~~- 80 (650)
+--.++++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++++.+..+.
T Consensus 20 ~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 99 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHL 99 (207)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTS
T ss_pred CCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcc
Confidence 345689999999999999999999999999999776665555422 23458999999999999999999775432
Q ss_pred ccCcEeeeeecc--cccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceE
Q 041899 81 KLGHEVGYSIRF--EDCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 81 ~~g~~vg~~~~~--~~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ki 157 (650)
.+....|..... ........+|+++|++.+.+.+.... .+.++++||+||+|. .....+...+...+....++.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~-~~~~~~~~~~~~i~~~~~~~~~~ 178 (207)
T 2gxq_A 100 KVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADE-MLSMGFEEEVEALLSATPPSRQT 178 (207)
T ss_dssp CEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHH-HHHTTCHHHHHHHHHTSCTTSEE
T ss_pred eEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhH-hhccchHHHHHHHHHhCCccCeE
Confidence 111111100000 00011347899999999988776643 678899999999993 22222322222222335568899
Q ss_pred EEEccCCCh--HHHHhhhCCCC
Q 041899 158 LISSATLDA--EKFSAYFNFAP 177 (650)
Q Consensus 158 i~~SAT~~~--~~~~~~~~~~~ 177 (650)
++||||++. +.+.+.+...|
T Consensus 179 i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 179 LLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp EEECSSCCHHHHHHHHHHCSSC
T ss_pred EEEEEecCHHHHHHHHHHcCCC
Confidence 999999954 45555443334
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=169.33 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=110.1
Q ss_pred ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHh
Q 041899 187 PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQA 266 (650)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 266 (650)
.++.+|...+..+. ....+..+....+.+++||||+++..++.++..|.+. ++.+..+||+++..+|.
T Consensus 7 ~i~q~~~~~~~~~~---K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~R~ 74 (175)
T 2rb4_A 7 NIRQYYVLCEHRKD---KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD---------GHQVSLLSGELTVEQRA 74 (175)
T ss_dssp CEEEEEEECSSHHH---HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT---------TCCEEEECSSCCHHHHH
T ss_pred CceEEEEEcCChHh---HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 46667766554331 2334455555556789999999999999999999764 67789999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEE
Q 041899 267 KIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 267 ~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
.+++.|++|..+|||||+++++|+|+|++++||+.+.. .. .....+..+|.||+||+||.| +|.|+.
T Consensus 75 ~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p--------~~----~~~~~~~~~~~qr~GR~gR~g~~g~~~~ 142 (175)
T 2rb4_A 75 SIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLP--------VK----QGEEPDYETYLHRIGRTGRFGKKGLAFN 142 (175)
T ss_dssp HHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCC--------C------CCSCCHHHHHHHHCBC----CCEEEEE
T ss_pred HHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCC--------CC----ccccCCHHHHHHHhcccccCCCCceEEE
Confidence 99999999999999999999999999999999984321 00 000188999999999999997 799999
Q ss_pred eeCcccc
Q 041899 346 LYTINSY 352 (650)
Q Consensus 346 l~~~~~~ 352 (650)
+++..+.
T Consensus 143 ~~~~~~~ 149 (175)
T 2rb4_A 143 MIEVDEL 149 (175)
T ss_dssp EECGGGH
T ss_pred EEccchH
Confidence 9987653
No 77
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=178.35 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=116.8
Q ss_pred CCCchHHHHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 8 TLPIYHYREQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
--..+++|.++++.+..+ ++++++||||||||..+.+.++..... .+.+++|++|+|+||.|+++.+........+
T Consensus 112 ~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 112 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 345788999999999987 999999999999996655455544322 2338999999999999999888664432223
Q ss_pred cEeeeeecccc---cCCCCceEEEEChHHHHHHHhcCC--CCCCCceEEecccccCCcc-ccHHHHHHHHHHhcCCCceE
Q 041899 84 HEVGYSIRFED---CTSEKTVLKYMTDGMVLREMLSDP--KLESYSVLMVDEAHERTLS-TDILLGIFKDLVRLRSDLKL 157 (650)
Q Consensus 84 ~~vg~~~~~~~---~~~~~~~i~~~T~~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~~-~d~ll~~l~~~~~~~~~~ki 157 (650)
..+++.+.... ......+|+++||+.|+..+.... .+.++++|||||+| +... ..+...+........++.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad-~l~~~~~~~~~~~~i~~~~~~~~q~ 270 (300)
T 3fmo_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD-VMIATQGHQDQSIRIQRMLPRNCQM 270 (300)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH-HHHHSTTHHHHHHHHHTTSCTTCEE
T ss_pred cEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH-HHhhccCcHHHHHHHHHhCCCCCEE
Confidence 34444333322 223456899999999999886633 57899999999999 3333 23333333333335678999
Q ss_pred EEEccCCC--hHHHHhhhCCCC
Q 041899 158 LISSATLD--AEKFSAYFNFAP 177 (650)
Q Consensus 158 i~~SAT~~--~~~~~~~~~~~~ 177 (650)
+++|||++ ...+...+...|
T Consensus 271 i~~SAT~~~~v~~~a~~~l~~p 292 (300)
T 3fmo_B 271 LLFSATFEDSVWKFAQKVVPDP 292 (300)
T ss_dssp EEEESCCCHHHHHHHHHHSSSC
T ss_pred EEEeccCCHHHHHHHHHHCCCC
Confidence 99999995 445555443333
No 78
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.79 E-value=1.1e-18 Score=171.98 Aligned_cols=156 Identities=15% Similarity=0.085 Sum_probs=109.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc--CCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY--TKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~--~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++++.+......+..++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEE
Confidence 489999999999999999999999999999765555544422 234589999999999999999986643221133333
Q ss_pred eeeccc-----ccCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCcccc-HHHHHHHHHHh-cCCCceEEE
Q 041899 88 YSIRFE-----DCTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTD-ILLGIFKDLVR-LRSDLKLLI 159 (650)
Q Consensus 88 ~~~~~~-----~~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d-~ll~~l~~~~~-~~~~~kii~ 159 (650)
...... .......+|+++|++.+.+.+.... .+.++++||+||+|. ..... +. ..+..+.. ..++.++++
T Consensus 126 ~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~-~~~~~~~~-~~~~~i~~~~~~~~~~l~ 203 (230)
T 2oxc_A 126 VFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADK-LLEEGSFQ-EQINWIYSSLPASKQMLA 203 (230)
T ss_dssp EECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHH-HHSTTSSH-HHHHHHHHHSCSSCEEEE
T ss_pred EEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchH-hhcCcchH-HHHHHHHHhCCCCCeEEE
Confidence 222111 1112457899999999998876554 578899999999993 22222 22 22233333 445789999
Q ss_pred EccCCChH
Q 041899 160 SSATLDAE 167 (650)
Q Consensus 160 ~SAT~~~~ 167 (650)
||||++.+
T Consensus 204 lSAT~~~~ 211 (230)
T 2oxc_A 204 VSATYPEF 211 (230)
T ss_dssp EESCCCHH
T ss_pred EEeccCHH
Confidence 99999644
No 79
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.79 E-value=5.1e-19 Score=175.83 Aligned_cols=162 Identities=19% Similarity=0.060 Sum_probs=111.0
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-------CCCCeEEEecchHHHHHHHHHHHHHHhCCcc
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-------TKHGKVGCTQPRRVAAISVAARVSREMGVKL 82 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-------~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~ 82 (650)
..+++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++.+.+.. ...
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~-~~~ 129 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC-RAC 129 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH-HHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH-hhc
Confidence 478999999999999999999999999999554333332211 234589999999999999988776532 112
Q ss_pred CcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCc
Q 041899 83 GHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDL 155 (650)
Q Consensus 83 g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~ 155 (650)
+..++....... ......+|+++|++.|+..+.... .+.++++||+||+| +.....+...+...+...+++.
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah-~l~~~~~~~~~~~i~~~~~~~~ 208 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEAD-RMLDMGFEPQIRKIVDQIRPDR 208 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHH-HHHHTTCHHHHHHHHTTSCSSC
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHH-HHhhhCcHHHHHHHHHhCCccc
Confidence 222222111111 011246899999999998887655 68899999999999 3333334333333333456789
Q ss_pred eEEEEccCCCh--HHHHhhh
Q 041899 156 KLLISSATLDA--EKFSAYF 173 (650)
Q Consensus 156 kii~~SAT~~~--~~~~~~~ 173 (650)
++++||||++. +.+.+.+
T Consensus 209 q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 209 QTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp EEEEEESCCCHHHHHHHHHH
T ss_pred eEEEEEeecCHHHHHHHHHH
Confidence 99999999954 3444443
No 80
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.78 E-value=1.8e-19 Score=168.00 Aligned_cols=135 Identities=18% Similarity=0.424 Sum_probs=107.9
Q ss_pred eeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhh
Q 041899 188 VEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAK 267 (650)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~ 267 (650)
++.+|...+..+.....+ ..+....+++++||||+++..++.++..|.+. ++.+..+||+++..+|.+
T Consensus 4 i~~~~~~~~~~~~K~~~l---~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 4 IKQFYVNVEEEEYKYECL---TDLYDSISVTQAVIFCNTRRKVEELTTKLRND---------KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp CEEEEEEEESGGGHHHHH---HHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHHH
T ss_pred cEEEEEECCcchhHHHHH---HHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---------CCCEEEEECCCCHHHHHH
Confidence 445555544444233333 33333345789999999999999999999874 677899999999999999
Q ss_pred hcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEe
Q 041899 268 IFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRL 346 (650)
Q Consensus 268 i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l 346 (650)
+++.|++|+.+|||||+++++|+|+|++++||+. +.|.+..+|.||+||+||.| +|.|+.+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~------------------~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINY------------------DLPANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEES------------------SCCSSGGGGGGSSCSCC-----CEEEEE
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEe------------------CCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999999999999999999999999999999993 34789999999999999997 7999999
Q ss_pred eCcccc
Q 041899 347 YTINSY 352 (650)
Q Consensus 347 ~~~~~~ 352 (650)
+++.+.
T Consensus 134 ~~~~~~ 139 (165)
T 1fuk_A 134 VTNEDV 139 (165)
T ss_dssp EETTTH
T ss_pred EcchHH
Confidence 987653
No 81
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=2.8e-18 Score=167.83 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC--CCCeEEEecchHHHHHHHHHHHHHHhCCccCcEee
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT--KHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVG 87 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg 87 (650)
.++++|.++++.+.+++++++++|||+|||..+...++..... .+.+++|++|+++|+.|+++.+.+......+..++
T Consensus 36 ~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 115 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 115 (220)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEE
Confidence 4899999999999999999999999999997666666554222 23489999999999999998886644221133333
Q ss_pred eeecccc-------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEE
Q 041899 88 YSIRFED-------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLL 158 (650)
Q Consensus 88 ~~~~~~~-------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii 158 (650)
....... ......+|+++|++.+...+.... .+.++++||+||||.......+. ..+..+.. ..++.+++
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~-~~~~~i~~~~~~~~~~i 194 (220)
T 1t6n_A 116 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMR-RDVQEIFRMTPHEKQVM 194 (220)
T ss_dssp EESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHH-HHHHHHHHTSCSSSEEE
T ss_pred EEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcH-HHHHHHHHhCCCcCeEE
Confidence 2211111 011245899999999988776654 57899999999999322122332 23333333 45578999
Q ss_pred EEccCCC--hHHHHh-hhC
Q 041899 159 ISSATLD--AEKFSA-YFN 174 (650)
Q Consensus 159 ~~SAT~~--~~~~~~-~~~ 174 (650)
+||||++ .+.+.+ |+.
T Consensus 195 ~~SAT~~~~~~~~~~~~~~ 213 (220)
T 1t6n_A 195 MFSATLSKEIRPVCRKFMQ 213 (220)
T ss_dssp EEESCCCTTTHHHHHTTCS
T ss_pred EEEeecCHHHHHHHHHHcC
Confidence 9999994 345544 443
No 82
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=2.4e-19 Score=168.22 Aligned_cols=133 Identities=15% Similarity=0.299 Sum_probs=112.6
Q ss_pred ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHh
Q 041899 187 PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQA 266 (650)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 266 (650)
.++.+|...+..+... .+..+....+++++||||+++..++.+++.|... ++.+..+||+|+..+|.
T Consensus 5 ~i~q~~~~~~~~~K~~----~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~---------~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 5 GLQQYYVKLKDNEKNR----KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ---------NFPAIAIHRGMPQEERL 71 (172)
T ss_dssp CCEEEEEECCGGGHHH----HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT---------TCCEEEECTTSCHHHHH
T ss_pred CeEEEEEECChHHHHH----HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc---------CCCEEEEECCCCHHHHH
Confidence 3566666655544433 3334444456789999999999999999999874 67789999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEE
Q 041899 267 KIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 267 ~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
.+++.|++|..+|||||+++++|+|+|++++||+ ++.|.+..+|.||+||+||.| +|.++.
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~------------------~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN------------------YDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE------------------SSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE------------------ECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 9999999999999999999999999999999998 444889999999999999998 799999
Q ss_pred eeCcc
Q 041899 346 LYTIN 350 (650)
Q Consensus 346 l~~~~ 350 (650)
+++..
T Consensus 134 ~~~~~ 138 (172)
T 1t5i_A 134 FVSDE 138 (172)
T ss_dssp EECSH
T ss_pred EEcCh
Confidence 99764
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=167.46 Aligned_cols=135 Identities=18% Similarity=0.289 Sum_probs=99.0
Q ss_pred ceeEEEecCCCCchHHHHHHHHHHHHhcC-CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHH
Q 041899 187 PVEIHYTKAPESNYIDAAIVTTLEIHATQ-ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQ 265 (650)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r 265 (650)
.++..|...+..+..... .++.... +++++||||+++..++.++..|... ++.+..+||+++..+|
T Consensus 19 ~i~q~~~~v~~~~K~~~L----~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~r 85 (185)
T 2jgn_A 19 NITQKVVWVEESDKRSFL----LDLLNATGKDSLTLVFVETKKGADSLEDFLYHE---------GYACTSIHGDRSQRDR 85 (185)
T ss_dssp TEEEEEEECCGGGHHHHH----HHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT---------TCCEEEEC--------
T ss_pred CceEEEEEeCcHHHHHHH----HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc---------CCceEEEeCCCCHHHH
Confidence 466666665555444432 2222222 5789999999999999999999764 6779999999999999
Q ss_pred hhhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEE
Q 041899 266 AKIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCF 344 (650)
Q Consensus 266 ~~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~ 344 (650)
..+++.|++|+.+|||||+++++|+|+|++++||+ ++.|.+..+|.||+||+||.| +|.|+
T Consensus 86 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~------------------~d~p~s~~~~~Qr~GR~~R~g~~g~~~ 147 (185)
T 2jgn_A 86 EEALHQFRSGKSPILVATAVAARGLDISNVKHVIN------------------FDLPSDIEEYVHRIGRTGRVGNLGLAT 147 (185)
T ss_dssp CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE------------------SSCCSSHHHHHHHHTTBCCTTSCEEEE
T ss_pred HHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE------------------eCCCCCHHHHHHHccccCCCCCCcEEE
Confidence 99999999999999999999999999999999998 444889999999999999998 79999
Q ss_pred EeeCcccc
Q 041899 345 RLYTINSY 352 (650)
Q Consensus 345 ~l~~~~~~ 352 (650)
.++++.+.
T Consensus 148 ~~~~~~~~ 155 (185)
T 2jgn_A 148 SFFNERNI 155 (185)
T ss_dssp EEECGGGG
T ss_pred EEEchhhH
Confidence 99987654
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.76 E-value=6.4e-18 Score=169.06 Aligned_cols=162 Identities=20% Similarity=0.163 Sum_probs=109.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-----------CCCCeEEEecchHHHHHHHHHHHHHH
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-----------TKHGKVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----------~~~~~ilv~~P~r~la~q~~~~v~~~ 77 (650)
-.++++|.++++.+.+++++++++|||||||..+...++.... ..+.+++|++|+++|+.|+++++.+.
T Consensus 44 ~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF 123 (253)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999654444443211 12348999999999999999988664
Q ss_pred hCCccCcEeeeeecccc------cCCCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHh
Q 041899 78 MGVKLGHEVGYSIRFED------CTSEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVR 150 (650)
Q Consensus 78 ~~~~~g~~vg~~~~~~~------~~~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~ 150 (650)
.. ..+..++....... ......+|+++|++.|.+.+.... .+.++++||+||+|. .....+.. .+..+..
T Consensus 124 ~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~-~~~~~~~~-~~~~i~~ 200 (253)
T 1wrb_A 124 SL-NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADR-MLDMGFEP-QIRKIIE 200 (253)
T ss_dssp HT-TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHH-HHHTTCHH-HHHHHHH
T ss_pred hc-cCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHH-HHhCchHH-HHHHHHh
Confidence 32 22222221111111 112457899999999998887655 678899999999993 22222222 2222322
Q ss_pred ---cCC--CceEEEEccCCChH--HHHhhh
Q 041899 151 ---LRS--DLKLLISSATLDAE--KFSAYF 173 (650)
Q Consensus 151 ---~~~--~~kii~~SAT~~~~--~~~~~~ 173 (650)
... +.++++||||++.+ .+.+.+
T Consensus 201 ~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 201 ESNMPSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp SSCCCCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred hccCCCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 222 67899999999543 444433
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=164.79 Aligned_cols=132 Identities=19% Similarity=0.281 Sum_probs=108.4
Q ss_pred ceeEEEecCCCCchHHHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHh
Q 041899 187 PVEIHYTKAPESNYIDAAIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQA 266 (650)
Q Consensus 187 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~ 266 (650)
.++..|...+..+... .+.++... .++++||||+++..++.+++.|... ++.+..+||+++.++|.
T Consensus 29 ~i~q~~~~~~~~~K~~----~L~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~---------g~~~~~lhg~~~~~~R~ 94 (191)
T 2p6n_A 29 DVIQEVEYVKEEAKMV----YLLECLQK-TPPPVLIFAEKKADVDAIHEYLLLK---------GVEAVAIHGGKDQEERT 94 (191)
T ss_dssp CSEEEEEECCGGGHHH----HHHHHHTT-SCSCEEEECSCHHHHHHHHHHHHHH---------TCCEEEECTTSCHHHHH
T ss_pred CceEEEEEcChHHHHH----HHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHH
Confidence 3555555544443333 33344333 3578999999999999999999875 67789999999999999
Q ss_pred hhcCCCCCCCcEEEEeCCCccccCcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEE
Q 041899 267 KIFVPTPDGARKVVLATNIAETSLTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFR 345 (650)
Q Consensus 267 ~i~~~~~~g~~kilvaT~i~e~gidip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~ 345 (650)
++++.|++|+.+|||||+++++|+|+|++++||+ ++.|.+..+|.||+||+||.| +|.|+.
T Consensus 95 ~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~------------------~d~p~~~~~~~qr~GR~gR~g~~g~~i~ 156 (191)
T 2p6n_A 95 KAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN------------------YDMPEEIENYVHRIGRTGCSGNTGIATT 156 (191)
T ss_dssp HHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE------------------SSCCSSHHHHHHHHTTSCC---CCEEEE
T ss_pred HHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE------------------eCCCCCHHHHHHHhCccccCCCCcEEEE
Confidence 9999999999999999999999999999999998 344889999999999999998 799999
Q ss_pred eeCcc
Q 041899 346 LYTIN 350 (650)
Q Consensus 346 l~~~~ 350 (650)
+++..
T Consensus 157 l~~~~ 161 (191)
T 2p6n_A 157 FINKA 161 (191)
T ss_dssp EECTT
T ss_pred EEcCc
Confidence 99865
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=162.13 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=102.2
Q ss_pred hcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc-----CCCCeEEEecchHHHHHH-HHHHHHHHhC
Q 041899 6 RKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY-----TKHGKVGCTQPRRVAAIS-VAARVSREMG 79 (650)
Q Consensus 6 r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~-----~~~~~ilv~~P~r~la~q-~~~~v~~~~~ 79 (650)
...++++++|.++++.+.+++++++.+|||+|||+++...+..... ..+++++|++|+++|+.| +.+.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999999999999999776666554311 124689999999999999 5555655443
Q ss_pred CccCcEeeeeeccccc------CCCCceEEEEChHHHHHHHhcC-------CCCCCCceEEecccccCCccccHHHHHHH
Q 041899 80 VKLGHEVGYSIRFEDC------TSEKTVLKYMTDGMVLREMLSD-------PKLESYSVLMVDEAHERTLSTDILLGIFK 146 (650)
Q Consensus 80 ~~~g~~vg~~~~~~~~------~~~~~~i~~~T~~~Ll~~l~~~-------~~l~~~~~iIiDE~Her~~~~d~ll~~l~ 146 (650)
. +..++........ .....+|+++|++.+.+.+... ..+.++++|||||+|.. ....+...++.
T Consensus 109 ~--~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~-~~~~~~~~~~~ 185 (216)
T 3b6e_A 109 K--WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT-NKEAVYNNIMR 185 (216)
T ss_dssp T--TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHHHHH
T ss_pred c--CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh-ccCCcHHHHHH
Confidence 2 1122211111100 0123689999999999887764 35788999999999943 23223333333
Q ss_pred HHHhcC--------------CCceEEEEccC
Q 041899 147 DLVRLR--------------SDLKLLISSAT 163 (650)
Q Consensus 147 ~~~~~~--------------~~~kii~~SAT 163 (650)
.+.... ++.++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322211 67899999998
No 87
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.57 E-value=3.3e-19 Score=167.01 Aligned_cols=116 Identities=19% Similarity=0.349 Sum_probs=103.2
Q ss_pred HHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcccc
Q 041899 210 EIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAETS 289 (650)
Q Consensus 210 ~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e~g 289 (650)
.+....+++++||||+++..++.+++.|... ++.+..+||+++..+|..+++.|++|+.+|||||+++++|
T Consensus 23 ~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~---------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 93 (170)
T 2yjt_D 23 HLLKQPEATRSIVFVRKRERVHELANWLREA---------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARG 93 (170)
Confidence 3333345689999999999999999999775 6778899999999999999999999999999999999999
Q ss_pred CcCCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC-CcEEEEeeCcccc
Q 041899 290 LTIDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG-PGKCFRLYTINSY 352 (650)
Q Consensus 290 idip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~-~G~~~~l~~~~~~ 352 (650)
+|+|++++||+ ++.|.|..+|.||+||+||.| +|.|+.+++..+.
T Consensus 94 id~~~~~~Vi~------------------~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 94 IDIPDVSHVFN------------------FDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 99999999998 445889999999999999998 7999999977653
No 88
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=2.3e-15 Score=167.83 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=84.7
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
+-.++.|...+..+.+|+ |..+.||+|||..+.+.++.... .+..++|+.|++.||.|.++.+...+ ..+|..+|.
T Consensus 78 ~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL-~G~qv~VvTPTreLA~Qdae~m~~l~-~~lGLsv~~ 153 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNAL-TGKGVHVVTVNDYLARRDAEWMGPVY-RGLGLSVGV 153 (997)
T ss_dssp CCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHT-TCSCCEEEESSHHHHHHHHHHHHHHH-HTTTCCEEE
T ss_pred CCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHH-hCCCEEEEeCCHHHHHHHHHHHHHHH-HhcCCeEEE
Confidence 345899999999999998 99999999999444333322212 34579999999999999998876543 234455554
Q ss_pred eecccc----cCCCCceEEEEChHHH-HHHHhcC-------CCCC---CCceEEecccc
Q 041899 89 SIRFED----CTSEKTVLKYMTDGMV-LREMLSD-------PKLE---SYSVLMVDEAH 132 (650)
Q Consensus 89 ~~~~~~----~~~~~~~i~~~T~~~L-l~~l~~~-------~~l~---~~~~iIiDE~H 132 (650)
.+...+ ......+|+|+|++.| +..+..+ ..++ ++.++||||+|
T Consensus 154 i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 154 IQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp CCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred EeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 332221 1112468999999998 5555443 2467 89999999999
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.67 E-value=1.4e-16 Score=162.06 Aligned_cols=147 Identities=12% Similarity=0.036 Sum_probs=103.2
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
+.++++|.++++.+.++++.++++|||+|||.++..++.......++++++++|+++|+.|+++++.+. +...+..++.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~~~~ 190 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKK 190 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH-TSCCGGGEEE
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh-cccccceEEE
Confidence 578999999999988888899999999999977655554432223459999999999999999999764 4332223332
Q ss_pred eecccccC---CCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 89 SIRFEDCT---SEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 89 ~~~~~~~~---~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
........ ....+|+++|++.+.+.. ...+.++++||+||||... . . .+..+.. ..+..++++||||+
T Consensus 191 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~--~~~~~~~~~vIiDEaH~~~-~-~----~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVKQP--KEWFSQFGMMMNDECHLAT-G-K----SISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp CSTTCSSTTCCCTTCSEEEECHHHHTTSC--GGGGGGEEEEEEETGGGCC-H-H----HHHHHTTTCTTCCEEEEECSSC
T ss_pred EeCCCcchhhhccCCcEEEEchHHHHhhH--HHHHhhCCEEEEECCccCC-c-c----cHHHHHHHhhcCCeEEEEeCCC
Confidence 22222111 156789999999876531 1257789999999999332 2 2 2233333 34678999999999
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.63 E-value=2e-15 Score=167.23 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=69.8
Q ss_pred HHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEE--
Q 041899 204 AIVTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVL-- 281 (650)
Q Consensus 204 ~~~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilv-- 281 (650)
....+..+.. ..+|.+|||+||....+.+++.+.. .. ...++.. .++.++++.|++|. .|++
T Consensus 372 ~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-----------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V 435 (540)
T 2vl7_A 372 YSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-----------IP-VIEENKK--TRHEEVLELMKTGK-YLVMLV 435 (540)
T ss_dssp HHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-----------SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEE
T ss_pred HHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-----------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEE
Confidence 3334444443 3478899999999999998876642 11 2234443 34666777776654 5666
Q ss_pred eCCCccccCcCCC----eEEEEeCCcccceeccCC-------------CCcccceeeecCHHhHHhhccccCCCC--CcE
Q 041899 282 ATNIAETSLTIDG----IKYVVDSGYSKMKWYNPK-------------TGMESLLVYPISKASAMQRAGRSGRTG--PGK 342 (650)
Q Consensus 282 aT~i~e~gidip~----v~~VId~G~~k~~~~d~~-------------~~~~~l~~~~~s~~~~~Qr~GRaGR~~--~G~ 342 (650)
+|..+..|||+|+ +++||..|+.-...-||. .+... +..+.......|-+||+-|.. .|.
T Consensus 436 ~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 436 MRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDS-IIHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp C---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHH-HHHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred ecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhH-HHHHHHHHHHHHHhCCcccCCCccEE
Confidence 8999999999998 899999887644433331 11110 111222567889999999976 466
Q ss_pred EEEe
Q 041899 343 CFRL 346 (650)
Q Consensus 343 ~~~l 346 (650)
.+.+
T Consensus 515 v~ll 518 (540)
T 2vl7_A 515 IYLC 518 (540)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.59 E-value=6.4e-15 Score=145.43 Aligned_cols=139 Identities=20% Similarity=0.177 Sum_probs=102.4
Q ss_pred cCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCc-cCcE
Q 041899 7 KTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVK-LGHE 85 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~-~g~~ 85 (650)
....++++|.++++.+.+++++++++|||+|||.++..++... ++++++++|+++|+.|+.+.+.+ ++.. ++..
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~ 164 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF 164 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEE
Confidence 3457899999999999999999999999999998876666553 56899999999999999988876 6543 3222
Q ss_pred eeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 86 VGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 86 vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
.| ......+|+++|++.+.+.... ...++++|||||+|.. ... . .+.+....+..++++||||+.
T Consensus 165 ~g-------~~~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l-~~~-~----~~~i~~~~~~~~~l~LSATp~ 229 (237)
T 2fz4_A 165 SG-------RIKELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL-PAE-S----YVQIAQMSIAPFRLGLTATFE 229 (237)
T ss_dssp SS-------SCBCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC-CTT-T----HHHHHHTCCCSEEEEEEESCC
T ss_pred eC-------CCCCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC-CCh-H----HHHHHHhccCCEEEEEecCCC
Confidence 11 1223578999999988765432 1246899999999933 222 1 223334445778999999984
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.49 E-value=4.1e-12 Score=141.16 Aligned_cols=314 Identities=18% Similarity=0.124 Sum_probs=182.1
Q ss_pred CCchHHHHHHHHH----HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 9 LPIYHYREQVLRA----VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 9 lpl~~~q~~~l~~----l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
+..+++|.+++++ +.+++++++.+|||+|||......++. .+.+++|++|+++|+.|+.+.+.. +....+.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~----~~~~v~i~~pt~~l~~q~~~~~~~-l~~~~~~ 76 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE----VKPKVLFVVRTHNEFYPIYRDLTK-IREKRNI 76 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH----HCSEEEEEESSGGGHHHHHHHHTT-CCCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh----CCCeEEEEcCCHHHHHHHHHHHHH-HhhhcCc
Confidence 4578999987765 568899999999999999433322332 256999999999999999866643 3221111
Q ss_pred ----Eee---eeecc-----------------cc---------------------------------cCCCCceEEEECh
Q 041899 85 ----EVG---YSIRF-----------------ED---------------------------------CTSEKTVLKYMTD 107 (650)
Q Consensus 85 ----~vg---~~~~~-----------------~~---------------------------------~~~~~~~i~~~T~ 107 (650)
..| |.... .. .....++|+++|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 111 10000 00 0012568999999
Q ss_pred HHHHHHHhcCC--CCCCCceEEecccccCCc-c-----------------------------------------------
Q 041899 108 GMVLREMLSDP--KLESYSVLMVDEAHERTL-S----------------------------------------------- 137 (650)
Q Consensus 108 ~~Ll~~l~~~~--~l~~~~~iIiDE~Her~~-~----------------------------------------------- 137 (650)
+.|+....... ...+..++||||||.-.- .
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~~ 236 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYIK 236 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCEE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99987654442 224678999999992100 0
Q ss_pred --------ccHHHHHH----------------------------HHHHh------------------------cCCC--c
Q 041899 138 --------TDILLGIF----------------------------KDLVR------------------------LRSD--L 155 (650)
Q Consensus 138 --------~d~ll~~l----------------------------~~~~~------------------------~~~~--~ 155 (650)
.+.+..+. ..+.. ...+ .
T Consensus 237 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~~ 316 (551)
T 3crv_A 237 VENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNEL 316 (551)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTTC
T ss_pred cccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccCc
Confidence 00000000 00000 0012 5
Q ss_pred eEEEEccCC-ChHHHHhhhCCC-Ccc------ccCCcccce-eEEEecC--C--C----CchHHHHHHHHHHHHhcCCCC
Q 041899 156 KLLISSATL-DAEKFSAYFNFA-PIL------RVPGRRYPV-EIHYTKA--P--E----SNYIDAAIVTTLEIHATQASG 218 (650)
Q Consensus 156 kii~~SAT~-~~~~~~~~~~~~-~~~------~~~~~~~~v-~~~~~~~--~--~----~~~~~~~~~~~~~~~~~~~~~ 218 (650)
.+|++|||+ +.+.+.+.+|-. +.. .++ ..|+- ...|.+. + . .++.......+..+... .+|
T Consensus 317 svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~-spf~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~-~~g 394 (551)
T 3crv_A 317 SIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ-KRVSGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ-AKA 394 (551)
T ss_dssp EEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT-SCCSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH-CSS
T ss_pred eEEEEeeCCCcHHHHHHHhCCCCccccccceeecC-CcCCCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh-CCC
Confidence 799999999 445566666643 221 111 11211 1122221 1 1 22344444555555543 367
Q ss_pred CEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeC--CCccccCcCC---
Q 041899 219 DILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLAT--NIAETSLTID--- 293 (650)
Q Consensus 219 ~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT--~i~e~gidip--- 293 (650)
.+|||+|+....+.+++.+ +..+..=..+++.++..+.++ +++ .-|++|| .....|||+|
T Consensus 395 ~~lvlF~Sy~~l~~v~~~~------------~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 395 NVLVVFPSYEIMDRVMSRI------------SLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp EEEEEESCHHHHHHHHTTC------------CSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESSCCSCCSSCCEETT
T ss_pred CEEEEecCHHHHHHHHHhc------------CCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEecceecccccccccC
Confidence 9999999999998887511 222332233456555555554 223 4799998 6889999999
Q ss_pred --CeEEEEeCCcccceeccC-----------CCCcccc---eeeecCHHhHHhhccccCCCCC--cEEEEe
Q 041899 294 --GIKYVVDSGYSKMKWYNP-----------KTGMESL---LVYPISKASAMQRAGRSGRTGP--GKCFRL 346 (650)
Q Consensus 294 --~v~~VId~G~~k~~~~d~-----------~~~~~~l---~~~~~s~~~~~Qr~GRaGR~~~--G~~~~l 346 (650)
..+.||..|+.-... || ..|.+.. +..| ......|-+||+=|... |..+.+
T Consensus 460 g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 528 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCNVWLL 528 (551)
T ss_dssp EESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEEEEEE
T ss_pred CcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEEEEEe
Confidence 478888888765544 44 2232121 3445 56778899999999874 544443
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.33 E-value=8.1e-13 Score=132.71 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=85.4
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCC-CcE-EEEeCCCccccCcCC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDG-ARK-VVLATNIAETSLTID 293 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g-~~k-ilvaT~i~e~gidip 293 (650)
++.++|||+.....+..+...|.+.. ++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~--------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL--------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH--------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc--------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 47899999999999999999987642 45577899999999999999999888 666 789999999999999
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCCC---CcEEEEeeCccccc
Q 041899 294 GIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRTG---PGKCFRLYTINSYQ 353 (650)
Q Consensus 294 ~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~~---~G~~~~l~~~~~~~ 353 (650)
++++||+ ++.|.+++.+.||.||++|.| +-.+|+++++...+
T Consensus 183 ~a~~VI~------------------~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiE 227 (271)
T 1z5z_A 183 SANRVIH------------------FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLE 227 (271)
T ss_dssp TCSEEEE------------------CSCCSCTTTC--------------CCEEEEEEETTSHH
T ss_pred cCCEEEE------------------ECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHH
Confidence 9999998 455888999999999999998 34578888776543
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.16 E-value=2.2e-10 Score=128.33 Aligned_cols=174 Identities=18% Similarity=0.275 Sum_probs=96.2
Q ss_pred eEEEEccCC-ChHHHHhhhCCCC-ccccCCcccc---eeEEEecCC-------CCchHHHHHHHHHHHHhcCCCCCEEEE
Q 041899 156 KLLISSATL-DAEKFSAYFNFAP-ILRVPGRRYP---VEIHYTKAP-------ESNYIDAAIVTTLEIHATQASGDILVF 223 (650)
Q Consensus 156 kii~~SAT~-~~~~~~~~~~~~~-~~~~~~~~~~---v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~iLVF 223 (650)
.+|++|||+ +.+.|.+.+|-.. .+.+ +..|+ ..+.+.... ...+.......+..+.... +|.+|||
T Consensus 377 ~~il~SaTL~p~~~~~~~lGl~~~~~~~-~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g~~lvl 454 (620)
T 4a15_A 377 KTIHMSGTLDPFDFYSDITGFEIPFKKI-GEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KKNTIVY 454 (620)
T ss_dssp EEEEEESSCCSHHHHHHHHCCCCCEEEC-CCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CSCEEEE
T ss_pred eEEEEccCCCcHHHHHHHhCCCceeeec-CCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 458999999 5566777666431 1111 11121 222222211 1122334444444554433 6779999
Q ss_pred eCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCC--CccccCcCCC--eEEEE
Q 041899 224 LTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATN--IAETSLTIDG--IKYVV 299 (650)
Q Consensus 224 ~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~--i~e~gidip~--v~~VI 299 (650)
+|+....+.+++.+. . + +.. ...+++..++..+++.|+ +.-.|+++|. ....|||+|+ .+.||
T Consensus 455 F~Sy~~l~~v~~~l~-~---~-----~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~vi 521 (620)
T 4a15_A 455 FPSYSLMDRVENRVS-F---E-----HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMII 521 (620)
T ss_dssp ESCHHHHHHHTSSCC-S---C-----CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEE
T ss_pred eCCHHHHHHHHHHHH-h---c-----chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEE
Confidence 999999998887664 1 0 121 445566667888888888 7888999974 8999999986 55788
Q ss_pred eCCcccceeccCC-------------CCcccceeeecCHHhHHhhccccCCCC--CcEEEEe
Q 041899 300 DSGYSKMKWYNPK-------------TGMESLLVYPISKASAMQRAGRSGRTG--PGKCFRL 346 (650)
Q Consensus 300 d~G~~k~~~~d~~-------------~~~~~l~~~~~s~~~~~Qr~GRaGR~~--~G~~~~l 346 (650)
..|+.-... ||. .+...-+..| ......|-+||+=|.. .|..+.+
T Consensus 522 I~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 522 LAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp ESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 877653321 221 1111002223 3566789999999977 4655554
No 95
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.40 E-value=6.1e-07 Score=100.35 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc--c-CCCCeEEEecchHHHHHHHHHHHHH
Q 041899 12 YHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG--Y-TKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 12 ~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~--~-~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
.+.|.+++..+..+++++++|++|+||||.+-..+.... . ..+.+|+++.||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 467999999999999999999999999977654433211 1 2345899999999999998876643
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.17 E-value=4.4e-06 Score=92.49 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=52.4
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
..+.+.|.+++..+.+++.++|.||+|+||||.+-..+... ...+.+|+++.|+..++..+.+..
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLA-ESLGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEecCcHHHHHHhHhhh
Confidence 45789999999999999999999999999998776554432 234568999999999988776543
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=9.3e-06 Score=87.78 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHHc-----CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 11 IYHYREQVLRAVQE-----NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 11 l~~~q~~~l~~l~~-----~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
+.+.|++++..+.. ...++|.|+.|||||+++-..+..........|+++.|+..++..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 67889999987643 24999999999999987765554332222237999999999988877655
No 98
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=5.5e-06 Score=93.58 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=54.4
Q ss_pred CchHHHHHHHHHHH-cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 10 PIYHYREQVLRAVQ-ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 10 pl~~~q~~~l~~l~-~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
.+.+.|.+++..+. .....+|.||+|+|||+.+...+... ..++.+|+++.|+..++.++.+++..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l-~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQA-VKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 37899999998765 45689999999999997776666554 34567999999999999999999964
No 99
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.73 E-value=0.00069 Score=76.41 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=53.5
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhCCc
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMGVK 81 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~~~ 81 (650)
.+.+.|.+++.. .+..++|.|+.|||||+.+..-+..... ....+|+++.+++.++.++.+++.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 478899999873 4677999999999999766544332211 123489999999999999999998877643
No 100
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.71 E-value=0.00019 Score=68.94 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=65.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
..+..+++.||+|+||||.+.+.+.... ..+.++++++|...- + .. ..+....|.. ...+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~-~~g~kVli~~~~~d~------r-~~---~~i~srlG~~---------~~~~ 69 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLE-YADVKYLVFKPKIDT------R-SI---RNIQSRTGTS---------LPSV 69 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCCG------G-GC---SSCCCCCCCS---------SCCE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEEEeccCc------h-HH---HHHHHhcCCC---------cccc
Confidence 3567889999999999999988877653 335588888875421 0 00 0011111100 0112
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEcc
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSA 162 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SA 162 (650)
.+.+..-++..+.....-.++++|||||++. +..+ .+..++.+... ++.+|+..-
T Consensus 70 ~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~Gl 124 (223)
T 2b8t_A 70 EVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIISGL 124 (223)
T ss_dssp EESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEECC
T ss_pred ccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEEec
Confidence 2345555666665443345689999999993 3333 33344444432 566666544
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.44 E-value=0.00027 Score=65.56 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=29.4
Q ss_pred CchHHHHHHHHHHH---------cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 10 PIYHYREQVLRAVQ---------ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 10 pl~~~q~~~l~~l~---------~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
|-.+.|+++++.+. .++.+++.||+|+||||++-.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 14 PKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 33566777776653 5789999999999999888666544
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.35 E-value=0.0048 Score=64.20 Aligned_cols=70 Identities=19% Similarity=0.306 Sum_probs=55.5
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHh-cccCCCCeEEEecchHHHHHHHHHHHHHH
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHE-AGYTKHGKVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~-~~~~~~~~ilv~~P~r~la~q~~~~v~~~ 77 (650)
.+.+.++|..++..+...+.+++..+-+.|||+.+...++. .....+..++++.|++..|..+.+++...
T Consensus 161 p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~m 231 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQA 231 (385)
T ss_dssp ECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 46789999999998877788999999999999776655443 22334558999999999998888776653
No 103
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.34 E-value=0.00033 Score=78.51 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=55.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+.......+.+|+++.|+..++.++.+++.+
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 3789999999998888899999999999998776655443222456999999999999999999854
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.33 E-value=0.00044 Score=64.55 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=30.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
.+...++.||.|+||||.+.+.+.... ..+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~-~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK-LGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH-HTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeecc
Confidence 367889999999999999877766542 2356888888874
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.31 E-value=0.0032 Score=69.98 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=56.8
Q ss_pred CCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcc-cCCCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 8 TLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAG-YTKHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 8 ~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~-~~~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
.+.+.++|..++..+...+.+++.++-|+|||+.+..+++... ...+.+++++.|++..|..+...+...+.
T Consensus 161 ~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 4568999999999887778899999999999977665544332 23345899999999999998887766553
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.22 E-value=0.00099 Score=62.42 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=31.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
.++..++.||.||||||.+...+... ...+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~-~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA-KIAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEEecc
Confidence 45688999999999999888777665 23466899999874
No 107
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00043 Score=79.52 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=54.5
Q ss_pred chHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 11 IYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 11 l~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+.+.|.+++..+..+..++|.||+|+|||+.+...+.......+.+|+++.|+..++.++.+++.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 679999999999888899999999999997765554432111356899999999999999999965
No 108
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.17 E-value=0.00062 Score=78.07 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
.+.+.|.+++..+..+..++|.||+|+|||+.+...+.......+.+|+++.|+..++.++.+++.+
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3689999999998888999999999999997766555443222456999999999999999998854
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.12 E-value=0.00081 Score=70.93 Aligned_cols=107 Identities=22% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKY 104 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~ 104 (650)
.+..+|.|+.|||||+.+-..+. ..+++++.|+++++.++.+++.+. +. ...+...+
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~-~~----------------~~~~~~~V 217 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANAS-GI----------------IVATKDNV 217 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTT-SC----------------CCCCTTTE
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhc-Cc----------------cccccceE
Confidence 35789999999999988755432 146799999999999888777321 10 01112335
Q ss_pred EChHHHHHHHhcCCC--CCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 105 MTDGMVLREMLSDPK--LESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 105 ~T~~~Ll~~l~~~~~--l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
.|-+.++. +... ...+++|||||+- ......+..++.. .+..++|+..-+
T Consensus 218 ~T~dsfL~---~~~~~~~~~~d~liiDE~s--m~~~~~l~~l~~~----~~~~~vilvGD~ 269 (446)
T 3vkw_A 218 RTVDSFLM---NYGKGARCQFKRLFIDEGL--MLHTGCVNFLVEM----SLCDIAYVYGDT 269 (446)
T ss_dssp EEHHHHHH---TTTSSCCCCCSEEEEETGG--GSCHHHHHHHHHH----TTCSEEEEEECT
T ss_pred EEeHHhhc---CCCCCCCCcCCEEEEeCcc--cCCHHHHHHHHHh----CCCCEEEEecCc
Confidence 67665443 2222 1248999999998 4554454444432 222566666544
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.00 E-value=0.0021 Score=66.02 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=27.3
Q ss_pred chHHHHHHHHHH----HcCC---eEEEEcCCCChHHHHHHHHHHh
Q 041899 11 IYHYREQVLRAV----QENQ---VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 11 l~~~q~~~l~~l----~~~~---~vii~apTGsGKT~~ip~~l~~ 48 (650)
++++|+++++.+ .+++ .+++.||+|+|||+.+-.+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHH
Confidence 567777776654 4443 4899999999999777655443
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.96 E-value=0.0015 Score=61.92 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=31.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRV 65 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 65 (650)
.+...++.||-||||||.+...+... ...+.++++++|...
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~-~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT-QFAKQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH-HHTTCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH-HHCCCEEEEEEeccC
Confidence 35567899999999999988887765 334668999999764
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.94 E-value=0.0027 Score=67.08 Aligned_cols=121 Identities=23% Similarity=0.284 Sum_probs=67.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.+++++||+|+||||.+..+..... ..+++++++ -+.|..+.+....+....+.++ +.. ...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-----~~~-----~~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-----YGE-----PNN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-----ECC-----TTC-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCccchhHHHHHHHHHHhcCCce-----eec-----ccc-----
Confidence 4789999999999988766654432 234555553 3667666665555555444321 000 000
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCc--cccHHHHHHHHHH-hcCCCceEEEEccCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTL--STDILLGIFKDLV-RLRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~-~~~~~~kii~~SAT~ 164 (650)
..+..+...........++++||||++- |.. ....+..-+..+. ...++.-+++++|+.
T Consensus 162 -~dp~~i~~~al~~a~~~~~DvvIIDTaG-r~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 162 -QNPIEIAKKGVDIFVKNKMDIIIVDTAG-RHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp -SCHHHHHHHHHHHTTTTTCSEEEEEECC-CSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCC-CccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 1122222222222233579999999997 433 2223333333333 355677778888885
No 113
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.85 E-value=0.0038 Score=58.77 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=23.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+.+++.||+|+|||+++-.+.... ...+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~-~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL-AKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEE
Confidence 789999999999998775554433 2334455544
No 114
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.80 E-value=0.0033 Score=55.95 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~ 45 (650)
...+..+++.||+|+|||+++-.+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHH
Confidence 456788999999999999776443
No 115
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0048 Score=62.51 Aligned_cols=123 Identities=10% Similarity=0.050 Sum_probs=62.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccC--CC---C-eEEEec-chHHHHHHHHHHHHHHhCCccCcEeeeeecccccC
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYT--KH---G-KVGCTQ-PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCT 96 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~--~~---~-~ilv~~-P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~ 96 (650)
...+++|.||||+|||+.+-..+.+.... .+ . ..+.+- ....--.+++..+.+.+. |....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~~--------- 111 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENLC--------- 111 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----------
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCCC---------
Confidence 45789999999999998776665443211 11 1 233322 111112233334444432 11000
Q ss_pred CCCceEEEEChHHHHHHHhcCC-CCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 97 SEKTVLKYMTDGMVLREMLSDP-KLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 97 ~~~~~i~~~T~~~Ll~~l~~~~-~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
.. .+...|-+.+...+ .-...-+|++||+|... ..+.+..+++........+-+|+.++|++
T Consensus 112 ~~------~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 112 GD------ISLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CC------CCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred ch------HHHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 00 01222322222211 12345689999999544 66777777664333344567788899984
No 116
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.74 E-value=0.00086 Score=60.18 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=20.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++.+++.||+|+|||+++-.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999887665543
No 117
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.69 E-value=0.0023 Score=70.96 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=78.9
Q ss_pred chHHHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeee
Q 041899 11 IYHYREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGY 88 (650)
Q Consensus 11 l~~~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~ 88 (650)
+...|+++++.+.+ ....+|+|+-|.|||+.+-+++.... +.++|+.|+...+..+.+...+
T Consensus 176 ~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~------------ 239 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGE------------ 239 (671)
T ss_dssp CCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGG------------
T ss_pred CCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhC------------
Confidence 45679999998876 56789999999999988887776542 3579999999988766543211
Q ss_pred eecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 89 SIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 89 ~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
.+.|..|.-++. ...+.+++|||||= .+...++..++ . ..+.|+||.|++
T Consensus 240 ------------~i~~~~Pd~~~~------~~~~~dlliVDEAA--aIp~pll~~ll----~---~~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ------------KFRFIAPDALLA------SDEQADWLVVDEAA--AIPAPLLHQLV----S---RFPRTLLTTTVQ 289 (671)
T ss_dssp ------------GCCBCCHHHHHH------SCCCCSEEEEETGG--GSCHHHHHHHH----T---TSSEEEEEEEBS
T ss_pred ------------CeEEeCchhhhh------CcccCCEEEEEchh--cCCHHHHHHHH----h---hCCeEEEEecCC
Confidence 145666665442 23468999999997 55554444444 2 234688898983
No 118
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.67 E-value=0.0093 Score=57.25 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=24.1
Q ss_pred HHHHHHHHcCC---eEEEEcCCCChHHHHHHHHHHh
Q 041899 16 EQVLRAVQENQ---VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 16 ~~~l~~l~~~~---~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+...+..++ .++|.||+|+|||+++-.+...
T Consensus 33 ~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 33 TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp HHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44445555555 7999999999999887665543
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.65 E-value=0.004 Score=65.81 Aligned_cols=121 Identities=19% Similarity=0.261 Sum_probs=67.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.+++++|++|+||||.+..+..... ..+.+++++ -|.|..+.+....++...+.++ |.. ...
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~-~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv-----~~~----~~~------ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ-KRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV-----FGN----PQE------ 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE-----ECC----TTC------
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE-----Eec----CCC------
Confidence 5789999999999988766654432 234455554 3777777666555555444321 000 000
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
..+.-+.+.......-.++++||||.+= |....+-+..-++.+.. ..++.-+++++||.
T Consensus 165 -~dp~~i~~~al~~a~~~~~DvVIIDTaG-rl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 165 -KDAIKLAKEGVDYFKSKGVDIIIVDTAG-RHKEDKALIEEMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-CSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccchHHHHHHHHHHHHhhcCceEEEEEeCCC
Confidence 1122222211111112358999999996 44444444444444433 45777788888885
No 120
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.57 E-value=0.01 Score=59.72 Aligned_cols=127 Identities=23% Similarity=0.302 Sum_probs=66.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
.++++.++||+|+||||.+-.+........+.+|+++ -|.+..+.+....+++..|.++- ..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~----------~~------ 167 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE----------VC------ 167 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC----------BC------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE----------ec------
Confidence 3568999999999999888766544322234455543 24454444433333333332210 00
Q ss_pred EEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccCCChHHHHhhh
Q 041899 102 LKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSATLDAEKFSAYF 173 (650)
Q Consensus 102 i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT~~~~~~~~~~ 173 (650)
..+..+...+. .+.++++||+|.+- +......++.-+..+.. ..++-.+++++||.+...+.++.
T Consensus 168 ---~~~~~l~~al~---~~~~~dlvIiDT~G-~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~ 233 (296)
T 2px0_A 168 ---YTKEEFQQAKE---LFSEYDHVFVDTAG-RNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIV 233 (296)
T ss_dssp ---SSHHHHHHHHH---HGGGSSEEEEECCC-CCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHT
T ss_pred ---CCHHHHHHHHH---HhcCCCEEEEeCCC-CChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHH
Confidence 01222222221 13678999999665 44433333333333332 22444578888887766665543
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.54 E-value=0.0047 Score=59.00 Aligned_cols=41 Identities=22% Similarity=0.190 Sum_probs=32.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRV 65 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 65 (650)
.+...++.||-||||||.+...+... ...+.+++++.|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HHCCCeEEEEeecCC
Confidence 46788999999999999888887765 344668999998753
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.022 Score=53.81 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHcC--CeEEEEcCCCChHHHHHHHHHH
Q 041899 15 REQVLRAVQEN--QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 15 q~~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.+.+..+ ..+++.||+|+|||+++-.+..
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34444555544 3599999999999987765543
No 123
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.43 E-value=0.0036 Score=59.13 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=30.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRV 65 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 65 (650)
..+...+++||-||||||.+...+.... ..+.+++++.|...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccC
Confidence 4577889999999999997766665442 33568999999654
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.34 E-value=0.0079 Score=62.74 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.||+|+|||+++-.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999888665544
No 125
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.30 E-value=0.015 Score=59.26 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=24.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+.+++.||+|+|||+++-.+..... ..+..++++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~-~~~~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK-KRGYRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEE
Confidence 5799999999999988766554331 2244566654
No 126
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.18 E-value=0.0057 Score=56.93 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=31.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecch
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPR 63 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 63 (650)
.++..++.||.||||||.+.+.+..... .+.+++++-|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 4678899999999999888888776533 35688888786
No 127
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.04 E-value=0.023 Score=58.89 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHHcCC---eEEEEcCCCChHHHHHHHHHHh
Q 041899 17 QVLRAVQENQ---VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 17 ~~l~~l~~~~---~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+...+..++ .+++.||+|+|||+.+-.+...
T Consensus 27 ~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 27 ALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp HHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4444455554 4899999999999888655443
No 128
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.04 E-value=0.021 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..+..+++.||+|+|||+++-.+.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHH
Confidence 456789999999999997764443
No 129
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.03 E-value=0.011 Score=56.95 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++.+++.||+|+|||+++-.+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999887655543
No 130
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.98 E-value=0.0066 Score=61.49 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
++.+++.||||+|||+++-.+..+.....+..++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 689999999999999877655443320334455544
No 131
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.94 E-value=0.0073 Score=73.00 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=53.9
Q ss_pred hhcCCCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccC-----CCCeEEEecchHHHHHHHHHHHHHHhC
Q 041899 5 ERKTLPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYT-----KHGKVGCTQPRRVAAISVAARVSREMG 79 (650)
Q Consensus 5 ~r~~lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~P~r~la~q~~~~v~~~~~ 79 (650)
......+.+.|.+++..- +++++|.|+.|||||+.+..-+...... ...+|+++.+|+++|.++.+|+.+.++
T Consensus 5 ~~~~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 5 KPADSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp -----CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 344567899999998864 7789999999999997765544433222 224899999999999999999987654
No 132
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.91 E-value=0.027 Score=57.26 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHcC---CeEEEEcCCCChHHHHHHHHHHh
Q 041899 18 VLRAVQEN---QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 18 ~l~~l~~~---~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+...+..+ ..+++.||+|+|||+.+-.+..+
T Consensus 38 l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 38 FKSITSKGKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp HHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 33444444 34677788999999877655433
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.89 E-value=0.05 Score=54.72 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~ 45 (650)
..+++.||+|+|||+++-.+
T Consensus 68 ~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999777544
No 134
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.88 E-value=0.0077 Score=68.15 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=52.4
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHH---hcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLH---EAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~---~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
.+.+.|.+++.. .+..++|.|+.|||||+.+..-+. ...-....+|+++..++.+|.++.+|+.+.++.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 467889998875 367899999999999966654332 221112358999999999999999999887654
No 135
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.86 E-value=0.012 Score=61.28 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....++|.||+|+|||+++-.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999887665543
No 136
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.77 E-value=0.044 Score=55.21 Aligned_cols=50 Identities=10% Similarity=0.177 Sum_probs=29.6
Q ss_pred HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEc
Q 041899 110 VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISS 161 (650)
Q Consensus 110 Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~S 161 (650)
+...+...|...++.++||||+|. ++.+..-++++.+-.-.++..+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 445555566677899999999993 33334444554443333345555544
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.75 E-value=0.042 Score=55.58 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=21.9
Q ss_pred HHHHHHHcCC--eEEEEcCCCChHHHHHHHHHH
Q 041899 17 QVLRAVQENQ--VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 17 ~~l~~l~~~~--~vii~apTGsGKT~~ip~~l~ 47 (650)
.+...+..++ .+++.||+|+|||+.+-.+..
T Consensus 36 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 36 RLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 3344455554 699999999999987755543
No 138
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.68 E-value=0.047 Score=55.74 Aligned_cols=34 Identities=15% Similarity=0.410 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 15 REQVLRAVQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 15 q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.+.+..++.++|.||.|+|||+++-.+...
T Consensus 21 l~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 21 SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3444555666789999999999999998777654
No 139
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.68 E-value=0.014 Score=66.55 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=52.3
Q ss_pred CchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhccc---CCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 10 PIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGY---TKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 10 pl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~---~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
.+.+.|.+++.. .+..++|.|+.|||||+.+..-+..... ....+|+++..|+.+|.++.+|+.+.++.
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 478899998876 3567999999999999766543332211 12348999999999999999999886653
No 140
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.67 E-value=0.055 Score=54.45 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
++.+.++||+|+||||.+-.+...... .+++++++ -++|..+.+....+.+..+..+ +. .....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~-------~~--~~s~~---- 169 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLKIWGERVGATV-------IS--HSEGA---- 169 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE-------EC--CSTTC----
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHHHHHHHcCCcE-------Ee--cCCcc----
Confidence 357889999999999887766543322 34555553 3455555444334444444321 00 00011
Q ss_pred EEEChHHH-HHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhc-------CCCceEEEEccCC
Q 041899 103 KYMTDGMV-LREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRL-------RSDLKLLISSATL 164 (650)
Q Consensus 103 ~~~T~~~L-l~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~-------~~~~kii~~SAT~ 164 (650)
.+..+ .+.+. .....++++||+||+- +....+.++..++.+... .++--++.+.|+.
T Consensus 170 ---~~~~v~~~al~-~a~~~~~dvvIiDtpg-~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t 234 (306)
T 1vma_A 170 ---DPAAVAFDAVA-HALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATT 234 (306)
T ss_dssp ---CHHHHHHHHHH-HHHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGG
T ss_pred ---CHHHHHHHHHH-HHHhcCCCEEEEECCC-chhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 11111 11111 0123467899999997 444444444444444321 2444466677774
No 141
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.015 Score=59.86 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=22.2
Q ss_pred HHHHHHHcC--CeEEEEcCCCChHHHHHHHHHH
Q 041899 17 QVLRAVQEN--QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 17 ~~l~~l~~~--~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+...+..+ ..+++.||+|+|||+.+-.+..
T Consensus 48 ~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 48 VLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp HHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 444445555 5699999999999987755543
No 142
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.60 E-value=0.044 Score=58.36 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=24.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQP 62 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P 62 (650)
.+.+++.||+|+|||+++-.+....... .+..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 3579999999999998875554332111 1345666543
No 143
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.033 Score=57.94 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+.++|.||+|+|||+++-.+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999988765544
No 144
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.56 E-value=0.025 Score=54.05 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+..++.++|.||+||||||++-.++.... ..+++++++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGL-RDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHH-HHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHH-HCCCeEEEEE
Confidence 45678999999999999988877764432 2244566643
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.53 E-value=0.038 Score=56.84 Aligned_cols=43 Identities=14% Similarity=0.443 Sum_probs=26.4
Q ss_pred CCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 120 LESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 120 l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
..+..++|+||+|. ++.+....+++.+....++..+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999994 55555555555554444556666665543
No 146
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.46 E-value=0.046 Score=59.54 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=19.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+.++++||+|+|||+++-.+..+.
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 689999999999998876655443
No 147
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.40 E-value=0.038 Score=57.85 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...+++.||+|+|||+++-.+..+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 478999999999999877655433
No 148
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.37 E-value=0.01 Score=59.11 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....+++.||+|+|||+++-.+..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4578999999999999877555433
No 149
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.32 E-value=0.05 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 578999999999999887655433
No 150
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.27 E-value=0.058 Score=55.21 Aligned_cols=28 Identities=29% Similarity=0.536 Sum_probs=21.3
Q ss_pred HHHHcCCe--EEEEcCCCChHHHHHHHHHH
Q 041899 20 RAVQENQV--VVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 20 ~~l~~~~~--vii~apTGsGKT~~ip~~l~ 47 (650)
..+..++. +++.||+|+||||.+-.+..
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34556655 99999999999988765543
No 151
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.23 E-value=0.087 Score=53.71 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.6
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..+++.||+|+|||+++-.+.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHH
Confidence 479999999999998775553
No 152
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.18 E-value=0.16 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.||+|+|||+++-.+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999877655443
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.16 E-value=0.029 Score=56.57 Aligned_cols=24 Identities=25% Similarity=0.435 Sum_probs=19.0
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..+..++|.||||+|||+++-.+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHHHH
Confidence 456789999999999997664443
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.13 E-value=0.073 Score=53.84 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+++.||+|+|||+++-.+..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999987755543
No 155
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.08 E-value=0.03 Score=56.96 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999877655444
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.06 E-value=0.018 Score=59.81 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
++.++|.||+|+|||+++-.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999888665543
No 157
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.01 E-value=0.065 Score=54.77 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+.++|.||.|+|||+++-.+..+.
T Consensus 30 ~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 30 APITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhc
Confidence 3789999999999999887776553
No 158
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.84 E-value=0.14 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++.+++.||+|+|||+++-.+..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 4567999999999999887655444
No 159
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.72 E-value=0.17 Score=50.56 Aligned_cols=123 Identities=21% Similarity=0.212 Sum_probs=59.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceE
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVL 102 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i 102 (650)
++.+.++|++|+||||.+......... .+++++++ -+++..+......+.+..+..+ +. ... .
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~---~~----~~~--~----- 162 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLLGEKVGVPV---LE----VMD--G----- 162 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE---EE----CCT--T-----
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHHhcccCCeEE---EE----cCC--C-----
Confidence 457888899999999877655443322 34566553 3455544433333334444321 00 000 0
Q ss_pred EEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 103 KYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 103 ~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
..+..+.+.....-...++++|||||.-.-+.+......+.+......++.-++.+.++.
T Consensus 163 --~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~ 222 (295)
T 1ls1_A 163 --ESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT 222 (295)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred --CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC
Confidence 122233332222111256899999999523333222222222222234555555666664
No 160
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.71 E-value=0.14 Score=49.79 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999877655443
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.68 E-value=0.031 Score=59.90 Aligned_cols=53 Identities=13% Similarity=0.202 Sum_probs=35.2
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
.+..++.++|.|++|+|||+++-+++.......+.+++++..-- ...++..|+
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~-s~~~l~~r~ 251 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM-SAQQLVMRM 251 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS-CHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHH
Confidence 35577899999999999999888877655333344677654321 224555554
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.62 E-value=0.037 Score=56.25 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-.+..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 67999999999999877655444
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.54 E-value=0.1 Score=52.57 Aligned_cols=32 Identities=25% Similarity=0.471 Sum_probs=22.0
Q ss_pred HHHHHHHHcCC--eEEEEcCCCChHHHHHHHHHH
Q 041899 16 EQVLRAVQENQ--VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 16 ~~~l~~l~~~~--~vii~apTGsGKT~~ip~~l~ 47 (650)
+.+...+..++ .+++.||+|+|||+.+-.+..
T Consensus 31 ~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 31 DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 34444455443 499999999999987755543
No 164
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.45 E-value=0.078 Score=54.72 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999887655443
No 165
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.32 E-value=0.036 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=19.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+.+++.||+|+|||+++-.+..+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 569999999999998876555443
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.23 E-value=0.079 Score=56.42 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=21.3
Q ss_pred HHHHcCC--eEEEEcCCCChHHHHHHHHHHh
Q 041899 20 RAVQENQ--VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 20 ~~l~~~~--~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+..++ .+++.||+|+|||+++-.+...
T Consensus 43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HHHHHTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4455554 5999999999999887655433
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.20 E-value=0.04 Score=57.87 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=19.0
Q ss_pred CCeEEE--EcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVI--VGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii--~apTGsGKT~~ip~~l~~ 48 (650)
...++| .||+|+|||+++-.+...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 457888 899999999888766543
No 168
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.06 E-value=0.11 Score=52.82 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=61.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe-c-chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT-Q-PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~-~-P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
.+..+.+.||+||||||.+-.+..... ..+++|.+. . ..+..+.+....+++..|..+ . +... ..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~------v--~q~~-~~--- 194 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK-NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKV------I--KHSY-GA--- 194 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEE------E--CCCT-TC---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-hcCCEEEEEeecccccchHHHHHHHHHHcCceE------E--eccc-cC---
Confidence 356899999999999998876654332 234555543 2 234444444444444444211 0 0000 00
Q ss_pred EEEEChHH-HHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCCC
Q 041899 102 LKYMTDGM-VLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATLD 165 (650)
Q Consensus 102 i~~~T~~~-Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~~ 165 (650)
.+.. ....+. .....+++++++|.+.-..........+-.......++..++++.++..
T Consensus 195 ----~p~~~v~e~l~-~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~ 254 (328)
T 3e70_C 195 ----DPAAVAYDAIQ-HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG 254 (328)
T ss_dssp ----CHHHHHHHHHH-HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred ----CHHHHHHHHHH-HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence 0111 111110 0011356789999987222233333332222223557778888888863
No 169
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.85 E-value=0.047 Score=51.66 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=32.1
Q ss_pred CCchHHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 9 LPIYHYREQVLRAVQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 9 lpl~~~q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
-|-..-+..+++.+..++.+.|.||.||||||++-.+.
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHh
Confidence 35556677899999999999999999999999886654
No 170
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.75 E-value=0.08 Score=55.74 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 11 IYHYREQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 11 l~~~q~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..-+.+++..+. .+..++|+|||||||||.+-.++-... ...++|++.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEe
Confidence 3344445555543 456789999999999998876654432 234566654
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.72 E-value=0.034 Score=54.70 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=26.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..++.+.|+|||||||||.+-.++-.......+.|++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~ 59 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 59 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE
Confidence 56788999999999999998876554321221455554
No 172
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.68 E-value=0.19 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+++.||+|+|||+++-.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999987754443
No 173
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.62 E-value=0.045 Score=50.94 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=30.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
+...++|..++|.||||.+.-..+.. ...+.+|++++-.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA-~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARA-VGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHH-HHTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEeeC
Confidence 45679999999999998877666554 34567899886544
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.59 E-value=0.82 Score=50.62 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+.+-..+..+..+++.||+|+||||++-.+..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 34445567889999999999999988765544
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.40 E-value=0.04 Score=55.50 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.||+|+|||+.+-.+..
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHH
Confidence 599999999999987755543
No 176
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.40 E-value=0.16 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
..+++.||+|+|||+++-.+..+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998776554443
No 177
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.26 E-value=0.14 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999877655444
No 178
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.13 E-value=0.094 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+-+++.||+|+|||+++-....+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 467999999999999665444333
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.08 E-value=0.057 Score=55.61 Aligned_cols=38 Identities=29% Similarity=0.362 Sum_probs=25.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
..+..++|+|||||||||.+-.++-......++.++.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI 158 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc
Confidence 45668999999999999988765443322224455443
No 180
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.01 E-value=0.059 Score=49.58 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.++.++|+||+||||||++-.+..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 567899999999999998876654
No 181
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.79 E-value=0.054 Score=56.26 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=27.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..++.++|+|||||||||.+-.++-.......++|+++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 456788999999999999988766543322224666554
No 182
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.72 E-value=0.26 Score=56.33 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.7
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~ 45 (650)
.+++.||||+|||+++-.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~al 541 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARAL 541 (758)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5999999999999766433
No 183
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.60 E-value=0.068 Score=47.10 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIP 43 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip 43 (650)
+.+-.....+..+++.||+|+|||+++-
T Consensus 18 ~~~~~~~~~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 18 REVEAAAKRTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHTCSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHhCCCCcEEEECCCCccHHHHHH
Confidence 3333344567889999999999996653
No 184
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.54 E-value=0.093 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+-+++.||+|+|||+++-....+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 367999999999999765444333
No 185
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.52 E-value=0.23 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+++.||+|+|||+++-.+..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 46799999999999987755443
No 186
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.47 E-value=0.67 Score=49.47 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=25.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.+..+.|.|++||||||++-.+..... ..+++|++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~-~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE-QQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh-hcCCeEEEe
Confidence 356789999999999998876543322 235677664
No 187
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.47 E-value=0.093 Score=55.43 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.-+-+++.||+|+|||+++-....+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3467999999999999766444333
No 188
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.45 E-value=0.07 Score=55.16 Aligned_cols=28 Identities=54% Similarity=0.776 Sum_probs=23.4
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+..++.++|+|||||||||++-.++-.
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999998766543
No 189
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.41 E-value=0.69 Score=48.55 Aligned_cols=55 Identities=25% Similarity=0.235 Sum_probs=33.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCC
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~ 80 (650)
++.+.++|++|+||||.+..+..... ..+++++++ -+.+..+.+....+....+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~-~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv 154 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK-GKGRRPLLVAADTQRPAAREQLRLLGEKVGV 154 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEeeccccCchhHHHHHHhcccCCc
Confidence 34688899999999988766554432 234555553 35666665433344444443
No 190
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.37 E-value=0.32 Score=51.42 Aligned_cols=121 Identities=24% Similarity=0.281 Sum_probs=59.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
.+++++|++|+||||.+..+........+.+++++ =|.+..+.+....+....+.++-. ... .
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~-------~~~--~------ 165 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFP-------SDV--G------ 165 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECC-------CCS--S------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEe-------CCC--C------
Confidence 36888899999999887766554432214455543 355655555443444444432100 000 0
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHh-cCCCceEEEEccC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVR-LRSDLKLLISSAT 163 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~-~~~~~kii~~SAT 163 (650)
..+..+++.....-...++++||||=+- +....+.+..-+..+.. ..++.-++++.|+
T Consensus 166 -~dp~~i~~~~l~~~~~~~~D~VIIDTpG-~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 166 -QKPVDIVNAALKEAKLKFYDVLLVDTAG-RLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp -SCHHHHHHHHHHHHHHTTCSEEEEECCC-CCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEECCC-cccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 1233332222211111468999999975 32222333333333332 3455555556665
No 191
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.25 E-value=0.073 Score=49.84 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=19.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.++.+.|+||+||||||++-.++-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 567899999999999999876653
No 192
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.075 Score=56.03 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+-+++.||+|+|||+++-....+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 467999999999999766544433
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.11 E-value=0.45 Score=47.50 Aligned_cols=121 Identities=23% Similarity=0.241 Sum_probs=61.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEE
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLK 103 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~ 103 (650)
..+.++|++|+||||.+..+...... .+++++++ -+.|..+.+....+.+..+.++- .+ . ..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~--~~-----~--~~------ 162 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY--GE-----P--GE------ 162 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE--CC-----T--TC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE--ec-----C--CC------
Confidence 36888999999999887666544322 34555543 34555555444344444443210 00 0 00
Q ss_pred EEChHHHHHHHhcCCCCCCCceEEecccccCCc--cccHHHHHHHHHHh-cCCCceEEEEccCC
Q 041899 104 YMTDGMVLREMLSDPKLESYSVLMVDEAHERTL--STDILLGIFKDLVR-LRSDLKLLISSATL 164 (650)
Q Consensus 104 ~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~--~~d~ll~~l~~~~~-~~~~~kii~~SAT~ 164 (650)
..+..++......-.-.++++||||=+- +.. ..+.+...++.+.. ..++.-++++.|+.
T Consensus 163 -~~p~~~~~~~l~~~~~~~~D~ViIDTpg-~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 163 -KDVVGIAKRGVEKFLSEKMEIIIVDTAG-RHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEECCC-SCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCC-CcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 1233332222211111578999999986 333 22333333333322 34566666677663
No 194
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.05 E-value=0.09 Score=50.76 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=33.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
+..+..++|.|++|+|||+++.+++.+.....+..++++.-. ....++.+++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~ 78 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREM 78 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHH
Confidence 446789999999999999888887765433334456665322 2234444444
No 195
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.05 E-value=0.11 Score=52.80 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=21.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|+|||||||||++-.++
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~ 192 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIM 192 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHh
Confidence 5689999999999999999876544
No 196
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.97 E-value=0.082 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=20.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+..+.|.||+||||||++-.+.-
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHh
Confidence 4678899999999999998866543
No 197
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.94 E-value=0.093 Score=49.48 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+..++|+||+||||||++-.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 5788999999999999988766543
No 198
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.88 E-value=0.12 Score=56.06 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=21.8
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..+.+++|+|||||||||.+-.++
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHG
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHH
Confidence 36788899999999999999886543
No 199
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.31 Score=51.23 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+-+++.||+|+|||+++-....+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999776544433
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.74 E-value=0.13 Score=49.54 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=33.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
+..+..++|.||+|+||||++-+++.... ..+++++++.-.. ...++.+++
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~~~~v~~~~~e~-~~~~~~~~~ 70 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGL-KMGEPGIYVALEE-HPVQVRQNM 70 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHH-HTTCCEEEEESSS-CHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEEccC-CHHHHHHHH
Confidence 45788999999999999998777765542 2345666654322 234455444
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.72 E-value=0.11 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++.++|+||+|+||||++-.++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 6788999999999999988766543
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.72 E-value=0.17 Score=62.74 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=31.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
.++++++.||+|+|||+++-.++.+.. .++.+++++....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEEEccc
Confidence 488999999999999998888877654 3466888876553
No 203
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.58 E-value=0.2 Score=45.61 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=24.2
Q ss_pred HHHHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 14 YREQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 14 ~q~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.+.+.. ...+++.||+|+|||+++-.+...
T Consensus 30 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 30 EIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33445555543 367999999999999887655443
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.50 E-value=0.091 Score=49.64 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+..+..++|.||+|+||||++-+++. ..+++++++.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~----~~~~~v~~i~ 52 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL----LSGKKVAYVD 52 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH----HHCSEEEEEE
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH----HcCCcEEEEE
Confidence 45688999999999999998887776 2345666653
No 205
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.50 E-value=0.1 Score=49.65 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..++.+.|+||+||||||++-.+.-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 56789999999999999999876654
No 206
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.45 E-value=0.11 Score=51.95 Aligned_cols=40 Identities=25% Similarity=0.368 Sum_probs=29.2
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.+..++.++|.||+|+||||++-++........+.+++++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3567899999999999999988777655433334366664
No 207
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.37 E-value=0.11 Score=52.20 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
..++.+.|+||+||||||++-.++-.. .|.|+..+|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~ 159 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFAN 159 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEec
Confidence 578999999999999999887655332 567765544
No 208
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.24 E-value=0.29 Score=52.30 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=18.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-.+..+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999877555433
No 209
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.20 E-value=1 Score=45.40 Aligned_cols=42 Identities=26% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe--cchHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT--QPRRVAA 67 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~--~P~r~la 67 (650)
++.+.++|++|+||||.+-.+..... ..+++|+++ -+++..+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~-~~g~kVllid~D~~r~~a 148 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYA-ELGYKVLIAAADTFRAGA 148 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHH-HTTCCEEEEECCCSCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEeCCCcchhH
Confidence 34688999999999987765544332 235566654 2444443
No 210
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.14 E-value=0.086 Score=48.00 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQ 44 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~ 44 (650)
..++.+.+.||.||||||++-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3577899999999999999875
No 211
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.10 E-value=0.11 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..+..++|.||+||||||++-.+.
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~ 27 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIF 27 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999886654
No 212
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.07 E-value=0.12 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
++.+.|.||+||||||++-.+.-
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999998876653
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.06 E-value=0.21 Score=47.93 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+..+.|.||+|+||||++-+++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456789999999999999998887764
No 214
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=91.06 E-value=0.077 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..+..++|.||.||||||++-...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4567889999999999999886654
No 215
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.86 E-value=0.14 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=20.5
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..++.+.|.||.||||||++-.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 67889999999999999999886554
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.86 E-value=0.14 Score=49.38 Aligned_cols=26 Identities=38% Similarity=0.656 Sum_probs=22.5
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..++.+.|.||+||||||++-.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45678999999999999999887666
No 217
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.74 E-value=0.22 Score=45.25 Aligned_cols=33 Identities=15% Similarity=0.390 Sum_probs=23.4
Q ss_pred HHHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 16 EQVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 16 ~~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.+.. ...+++.||+|+|||+++-.+...
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 344444433 568999999999999887665543
No 218
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.71 E-value=0.15 Score=47.61 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..++.+++.||+||||||+.-.....
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 456789999999999999988666543
No 219
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.45 E-value=0.13 Score=48.94 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=22.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+.+.++++|.||+||||+||...+....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4456788999999999999997766554
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.30 E-value=0.8 Score=49.23 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=59.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec--chHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCceEEE
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ--PRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTVLKY 104 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~--P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~i~~ 104 (650)
+++++|++|+||||.+-.+...... .+.+++++. |.|..+.+..+......+.++ .+ . ....
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v---~~--~----~~~~------ 166 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNATKARIPF---YG--S----YTEM------ 166 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE---EE--C----CCCS------
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHhhccCceE---Ec--c----CCCC------
Confidence 6889999999999888777654432 244555543 445555443333333333321 01 0 0000
Q ss_pred EChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccCC
Q 041899 105 MTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSATL 164 (650)
Q Consensus 105 ~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT~ 164 (650)
.+..+.+.....-...+++++|||-+-......++...+.+......++.-++++.|+.
T Consensus 167 -dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 167 -DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp -CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred -CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 11111111111101256899999998733222223222211111235666677788874
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.21 E-value=0.17 Score=48.12 Aligned_cols=27 Identities=19% Similarity=0.469 Sum_probs=21.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..++.++|+||.||||||++-.+.-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 567899999999999999998765543
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.95 E-value=0.29 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-....+
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999877554433
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=89.86 E-value=0.18 Score=47.23 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=21.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+..++++||+||||||++-.+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 346788999999999999988765543
No 224
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=89.74 E-value=0.89 Score=41.39 Aligned_cols=126 Identities=15% Similarity=0.233 Sum_probs=75.3
Q ss_pred cCCCchHHHHHHHHHHH--cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCc
Q 041899 7 KTLPIYHYREQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGH 84 (650)
Q Consensus 7 ~~lpl~~~q~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~ 84 (650)
+.+|=..-|...+..+. ..+..+|.|+-|++|+.....-+.......+.+|.++.|+......+.+.+. . -|.
T Consensus 31 ~~~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~----l-~~~ 105 (189)
T 2l8b_A 31 KSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER----L-SGE 105 (189)
T ss_dssp GCCCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT----C-SSC
T ss_pred CccccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC----c-Ccc
Confidence 34556667888888874 5678999999999999664333444334457799999999888776553321 0 011
Q ss_pred EeeeeecccccCCCCceEEEEChHHHHHHHhcCCCCCCCceEEecccccCCccccHHHHHHHHHHhcCCCceEEEEccC
Q 041899 85 EVGYSIRFEDCTSEKTVLKYMTDGMVLREMLSDPKLESYSVLMVDEAHERTLSTDILLGIFKDLVRLRSDLKLLISSAT 163 (650)
Q Consensus 85 ~vg~~~~~~~~~~~~~~i~~~T~~~Ll~~l~~~~~l~~~~~iIiDE~Her~~~~d~ll~~l~~~~~~~~~~kii~~SAT 163 (650)
.+ |-.. .+..+..+..=+.+||||+-. +...-.+.++.... +.+.|+|++--+
T Consensus 106 t~-------------------t~~~---ll~~~~~~tp~s~lIVD~Aek--LS~kE~~~Lld~A~--~~naqvvll~~~ 158 (189)
T 2l8b_A 106 LI-------------------TGRR---QLLEGMAFTPGSTVIVDQGEK--LSLKETLTLLDGAA--RHNVQVLITDSG 158 (189)
T ss_dssp SS-------------------STTT---TTTTSCCCCCCCEEEEEESSS--HHHHHHHHHHHHHH--HTTCCEEEEESS
T ss_pred ee-------------------ehhh---hhcCCCCCCCCCEEEEechhh--cCHHHHHHHHHHHH--hcCCEEEEeCCc
Confidence 11 1000 011111245567999999982 33333344444433 345888888655
No 225
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=89.58 E-value=0.3 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+-+||+||.|+||||++-.++.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999988655543
No 226
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.57 E-value=0.18 Score=45.41 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=17.4
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~ 45 (650)
..++++||+||||||++-.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999988766
No 227
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.51 E-value=0.24 Score=45.30 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...++++|++||||||+.-.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999988765543
No 228
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.43 E-value=0.22 Score=46.95 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~ 49 (650)
++++.||+||||+||...+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999998776554
No 229
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.21 E-value=0.33 Score=48.70 Aligned_cols=36 Identities=33% Similarity=0.350 Sum_probs=25.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.++.+.+.||+||||||.+-.+..... ..+++|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-hcCCEEEEE
Confidence 356899999999999998876654332 234566553
No 230
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.09 E-value=0.23 Score=52.58 Aligned_cols=43 Identities=16% Similarity=0.290 Sum_probs=32.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAA 67 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la 67 (650)
.+.+++|.|+||||||+.+..++... ...+..++|+=|..+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~-~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTG-LLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHH-HHTTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCchh
Confidence 45679999999999998765554433 33466889999987775
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.00 E-value=0.92 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-.+..+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999887554433
No 232
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.98 E-value=0.35 Score=48.99 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=29.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCC-----CCeEEEecc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTK-----HGKVGCTQP 62 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~-----~~~ilv~~P 62 (650)
..+..++|.||+|+|||+++.+++....... +++++++.-
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~ 149 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDT 149 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEES
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 4578999999999999998888877643221 457777643
No 233
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.97 E-value=0.23 Score=45.57 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..+++.|++||||||++-.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999998876544
No 234
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.92 E-value=0.58 Score=46.82 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..+.+.||+||||||.+-....... ..+++|.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 45788999999999998876654332 235566654
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.90 E-value=0.23 Score=44.90 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..++|.||.||||||++-.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999998865543
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.90 E-value=0.33 Score=50.64 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=31.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRV 65 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~ 65 (650)
.+.+++|.|||||||||.+-..+... ...+.+++++=|...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HHCCCEEEEEeCCcC
Confidence 56789999999999998886665544 345668888888654
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.87 E-value=0.2 Score=50.72 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.0
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~ 45 (650)
++.++|+||||||||++....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357999999999999776443
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.86 E-value=0.18 Score=48.22 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=16.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||+||||||++-.+.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3467889999999999999886654
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.79 E-value=0.26 Score=45.96 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+..++|.||.||||||++-.+.-
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999998876543
No 240
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.74 E-value=0.3 Score=49.31 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 19 LRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 19 l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+..+..+..++|.|++|+|||+++.++...... ++.+++++.-- .-..++..|+..
T Consensus 62 lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 62 TYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECC-CCHHHHHHHHHH
Confidence 333557889999999999999888887765433 23567776432 334555556544
No 241
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=88.73 E-value=2.2 Score=43.12 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCCCCCCC--ccHHHHHhccCCCChHHHHHHHhhcccc-ChHHHHHHHHhhhcCCCccccCcchHHHHHH
Q 041899 409 GALNQVGE--LTKVGRQMAEFPLDPMLSKMIVASDKFK-CSNEIITIAALLSVGNSVFYRPKNKKFLADN 475 (650)
Q Consensus 409 g~l~~~~~--lT~lG~~~~~~p~~p~~~~~l~~~~~~~-c~~~~l~i~a~ls~~~~~f~~~~~~~~~~~~ 475 (650)
|+++.+|. .|++|+++|.+++++..++.+.....-. ...+++.+.|.-++.+.+-+++.+.......
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L 70 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKL 70 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHH
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHH
Confidence 56777664 6999999999999999999999876654 4556777777766666666666555444433
No 242
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.67 E-value=0.23 Score=49.75 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
...++|+||||||||+++-...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La 24 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLA 24 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHH
Confidence 4578999999999998765443
No 243
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=88.61 E-value=0.24 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.|+.||||||++-.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999988765443
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.57 E-value=0.2 Score=51.37 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=30.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRR 64 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r 64 (650)
..+..++|.||+||||||++-+++.... ..+++++++-...
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~-~~gg~VlyId~E~ 99 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ-KMGGVAAFIDAEH 99 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEESSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH-hcCCeEEEEeccc
Confidence 3467899999999999998888776543 2356777775543
No 245
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.53 E-value=0.18 Score=53.27 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=23.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.+++++|++|+||||.+..+...... .+.+++++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~-~G~kVllv 133 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQK-RGLKPALI 133 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHH-HHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 37899999999999887766544322 23455554
No 246
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.51 E-value=0.26 Score=44.68 Aligned_cols=24 Identities=13% Similarity=0.329 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..++++|+.||||||+.-.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999988655433
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.44 E-value=0.23 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..++|.||||+|||+++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La 55 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELV 55 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45668999999999998775544
No 248
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.41 E-value=0.27 Score=47.92 Aligned_cols=20 Identities=40% Similarity=0.368 Sum_probs=16.6
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.++|+|||||||||+.-.+.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999998775544
No 249
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.16 E-value=0.2 Score=45.83 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+..+++.|++||||||+.-.+...
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4557899999999999998766543
No 250
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=88.14 E-value=2 Score=43.08 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=65.4
Q ss_pred HHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCC
Q 041899 206 VTTLEIHATQASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNI 285 (650)
Q Consensus 206 ~~~~~~~~~~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i 285 (650)
..++.... ..+.++|||+.......-+...+.. .++....+.|+....+++ . .++...+.+.|..
T Consensus 115 ~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~---------~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 115 RDLINLVQ-EYETETAIVCRPGRTMDLLEALLLG---------NKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSE 179 (328)
T ss_dssp HHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTT---------SSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhc---------CCCceEeCCCCchhhhhh-c----ccCCceEEEEECC
Confidence 33443333 2467999999988877766666543 278888888885443322 1 2345666666776
Q ss_pred ccccCc-----CCCeEEEEeCCcccceeccCCCCcccceeeecCHHhHHhhccccCCC-----CCcEEEEeeCccccc
Q 041899 286 AETSLT-----IDGIKYVVDSGYSKMKWYNPKTGMESLLVYPISKASAMQRAGRSGRT-----GPGKCFRLYTINSYQ 353 (650)
Q Consensus 286 ~e~gid-----ip~v~~VId~G~~k~~~~d~~~~~~~l~~~~~s~~~~~Qr~GRaGR~-----~~G~~~~l~~~~~~~ 353 (650)
..-|+| .-+.+.||- ||+.-+ .....+|.+-|+-|. .+-.+|||.+....+
T Consensus 180 g~~gin~~~~nl~~aD~VI~--------~DsdwN---------p~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLIC--------LDTTVD---------TSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEE--------CSTTCC---------TTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCcCcccccCCCCCEEEE--------ECCCCC---------CCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 666675 455666664 554322 222244544444444 245699998877654
No 251
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=88.04 E-value=0.28 Score=44.46 Aligned_cols=21 Identities=29% Similarity=0.654 Sum_probs=17.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++||||||++-.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999998866543
No 252
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.04 E-value=0.23 Score=46.62 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..+.|.||+||||||++-.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~ 43 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLA 43 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45688999999999999876543
No 253
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.03 E-value=0.37 Score=59.91 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=54.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccCcEeeeeecccccCCCCce
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLGHEVGYSIRFEDCTSEKTV 101 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g~~vg~~~~~~~~~~~~~~ 101 (650)
+..+.++++.||+|||||+++-+++.+.. ..+.+++++. ...+..++. ++.+|.++....-+ .+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~-k~Ge~~~Fit-~ee~~~~L~---a~~~G~dl~~l~~~--------~pd-- 1142 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ-REGKTCAFID-AEHALDPIY---ARKLGVDIDNLLCS--------QPD-- 1142 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEEC-TTSCCCHHH---HHHTTCCTTTCEEE--------CCS--
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEE-ccccHHHHH---HHHcCCChhHheee--------cCc--
Confidence 45788999999999999999999888764 3456777763 233333333 34566655432211 011
Q ss_pred EEEEChHHH---HHHHhcCCCCCCCceEEecccc
Q 041899 102 LKYMTDGMV---LREMLSDPKLESYSVLMVDEAH 132 (650)
Q Consensus 102 i~~~T~~~L---l~~l~~~~~l~~~~~iIiDE~H 132 (650)
+.+.. ...+. ....+++|||||+-
T Consensus 1143 ----~~e~~~~i~~~l~---~~~~~dlvVIDsl~ 1169 (2050)
T 3cmu_A 1143 ----TGEQALEICDALA---RSGAVDVIVVDSVA 1169 (2050)
T ss_dssp ----SHHHHHHHHHHHH---HHTCCSEEEESCGG
T ss_pred ----chHHHHHHHHHHH---HhCCCCEEEECCcc
Confidence 22222 22222 14568999999987
No 254
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=88.03 E-value=0.31 Score=49.29 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=26.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecch
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPR 63 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~ 63 (650)
+.++|+|+.||||||++-.++-.. .+.++.++.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEec
Confidence 468999999999999987655432 35578888773
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.02 E-value=0.86 Score=52.72 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.3
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~ 45 (650)
..+++.||||+|||+++-.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~l 608 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTL 608 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 37999999999999766443
No 256
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=87.96 E-value=0.32 Score=44.86 Aligned_cols=27 Identities=30% Similarity=0.624 Sum_probs=21.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+..+++.|++||||||+.-.+...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 446678999999999999998766543
No 257
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.88 E-value=0.41 Score=42.90 Aligned_cols=26 Identities=31% Similarity=0.460 Sum_probs=21.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..++.+.+.||.||||||++-.+.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999988665543
No 258
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.86 E-value=0.29 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....+++.|++||||||++-.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999988765433
No 259
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.76 E-value=0.46 Score=46.83 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=22.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..++.++|.||+||||||++-+++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999999999988777653
No 260
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.75 E-value=0.73 Score=47.24 Aligned_cols=35 Identities=34% Similarity=0.461 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
+..+.+.||+||||||.+-.+..... ..+++|.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK-NEGTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc-ccCCEEEEe
Confidence 45789999999999998876544332 235566554
No 261
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.69 E-value=0.35 Score=46.02 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=19.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.....+++.|++||||||++-.+...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999998665543
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=87.62 E-value=0.5 Score=48.25 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=29.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccC-----CCCeEEEecc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYT-----KHGKVGCTQP 62 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~P 62 (650)
..+..++|.||+|+|||+++.+++...... .+++++|+.-
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~ 164 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDT 164 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEEC
Confidence 356789999999999999888877764332 2457777644
No 263
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.57 E-value=0.28 Score=44.39 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=19.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..++|.||.||||||++-.+.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35679999999999999886654
No 264
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=87.54 E-value=0.22 Score=47.96 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 478899999999999999886543
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.51 E-value=0.31 Score=48.75 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..++|+||||||||+++-...
T Consensus 11 ~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHH
Confidence 468899999999998775443
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.47 E-value=0.25 Score=45.52 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..+++.||.||||||++-.+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHh
Confidence 468899999999999887664
No 267
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.46 E-value=0.33 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..++++|++||||||+.-.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999998865543
No 268
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.41 E-value=0.19 Score=48.47 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999886553
No 269
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.37 E-value=0.41 Score=48.99 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEec
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQ 61 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~ 61 (650)
+..++.++|.||+|+||||++-+++.... ..+++++++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~-~~g~~vlyi~ 96 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGIAAFID 96 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH-hCCCeEEEEE
Confidence 34578999999999999998888776543 2355677654
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.35 E-value=0.69 Score=52.62 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||.++-.+..+
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 45899999999999666544444
No 271
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.27 E-value=0.43 Score=44.06 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=22.1
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.....+++.|++||||||+.-.+...
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456678999999999999988665543
No 272
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=87.24 E-value=0.52 Score=42.71 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=19.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+.++|+.||||||++...+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999988776654
No 273
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.17 E-value=0.29 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..++.+.|.||+||||||++-.++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45778999999999999999877764
No 274
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.07 E-value=0.5 Score=46.35 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=24.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
..++.+.|.||.||||||++-.+.--. ....|.|.+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~ 70 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHL 70 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEE
Confidence 468899999999999999886553221 223455554
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.00 E-value=0.43 Score=42.84 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
-++++|.|+.||||||+.-.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999988665433
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.97 E-value=0.37 Score=44.77 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+++.|+.||||||++-.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999876543
No 277
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.91 E-value=0.29 Score=44.87 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHH
Q 041899 28 VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSRE 77 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~ 77 (650)
++|.|++|||||+.+.++... +.+++|+..-...-.+..+|++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-----APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-----CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-----CCCeEEEecCCCCCHHHHHHHHHH
Confidence 689999999999888876643 345777766444344555566543
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.91 E-value=0.33 Score=45.21 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+..+.|.||.||||||++-...-
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999998765543
No 279
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.91 E-value=0.38 Score=46.48 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....+++.||+||||||++-.+...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999998776544
No 280
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.87 E-value=0.39 Score=43.99 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+.+.||.||||||++-.+.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998865543
No 281
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=86.79 E-value=0.31 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..+++.|+.||||||++-.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998866543
No 282
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=86.73 E-value=0.39 Score=45.15 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.++|.||+||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987665443
No 283
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.72 E-value=0.33 Score=51.62 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=36.5
Q ss_pred HHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHH
Q 041899 21 AVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 21 ~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
.+..++.++|.|++|+|||+++-+++.......+.+++++..- .-..++..|+.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~~~~~l~~R~~ 249 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-MPAAQLTLRMM 249 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-SCHHHHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHH
Confidence 3557789999999999999888887766543334567775432 22345555653
No 284
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.70 E-value=0.53 Score=53.64 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=64.6
Q ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCC-ccccCcCCCe
Q 041899 217 SGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNI-AETSLTIDGI 295 (650)
Q Consensus 217 ~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i-~e~gidip~v 295 (650)
+.+++|.+|++.-+.+.++.+.+.+... ++.+..+||+++..++..+++...+|..+|+|+|.. +...+.+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~-----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKF-----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCS-----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhc-----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCC
Confidence 6789999999999999999988875321 467889999999999988888888899999999963 4456778888
Q ss_pred EEEE
Q 041899 296 KYVV 299 (650)
Q Consensus 296 ~~VI 299 (650)
.+||
T Consensus 492 ~lVV 495 (780)
T 1gm5_A 492 GLVI 495 (780)
T ss_dssp CEEE
T ss_pred ceEE
Confidence 8766
No 285
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.70 E-value=0.5 Score=47.84 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 15 REQVLRAVQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 15 q~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+..++..++.+++.||+|+|||+++-.+..
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHH
Confidence 344455566788999999999999977755443
No 286
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.63 E-value=0.21 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|.||.||||||++-.+
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46888999999999999988654
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.60 E-value=0.33 Score=45.47 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+..+.|.||+||||||++-.+.-
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3556789999999999998865543
No 288
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=86.50 E-value=0.4 Score=42.44 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
....+|.||+|||||+++-.+..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999988765543
No 289
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=86.50 E-value=0.42 Score=44.95 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.||+||||||++-.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998766544
No 290
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.49 E-value=0.57 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=19.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..++++||+||||||++-.+..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998766543
No 291
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=86.39 E-value=0.84 Score=52.84 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=22.3
Q ss_pred HHHHHHHc--CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 17 QVLRAVQE--NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 17 ~~l~~l~~--~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.+.. .++++++||+|+|||+++-.+...
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHH
Confidence 34444433 457999999999999877655443
No 292
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.25 E-value=0.74 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+++.||+|+|||+++-.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999987755543
No 293
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=86.24 E-value=0.34 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=19.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|.||.||||||++-.+
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46888999999999999988654
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=86.18 E-value=0.44 Score=49.76 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=28.0
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhcccC-----CCCeEEEec
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEAGYT-----KHGKVGCTQ 61 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~~~~-----~~~~ilv~~ 61 (650)
..+..+.|.||+||||||++-+++...... .+++++++-
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 367899999999999999988776543221 234677653
No 295
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.14 E-value=0.43 Score=44.14 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
++.+.+.||.||||||++-.+.-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 457899999999999988766543
No 296
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.14 E-value=0.28 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~ 55 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFN 55 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999999886553
No 297
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.08 E-value=1.4 Score=44.39 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+-|.||+||||||++-.+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999876543
No 298
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.07 E-value=0.29 Score=49.05 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=31.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccC-CCCeEEEecchHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYT-KHGKVGCTQPRRVA 66 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~-~~~~ilv~~P~r~l 66 (650)
.+ .+.|.||+|+||||++.+++.+.... .+++++|+-....+
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 35 78999999999999988888765332 25688887654443
No 299
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.01 E-value=0.47 Score=43.22 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+|+||+||||||++-.+..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999998876544
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.97 E-value=0.38 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..++|+|+.||||||++-.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999988665433
No 301
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=85.92 E-value=0.31 Score=44.38 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+.|+|++||||||++-..+-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999988766543
No 302
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.92 E-value=0.22 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|+||+||||||++-.+.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHH
Confidence 468899999999999999986543
No 303
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=85.91 E-value=0.26 Score=48.32 Aligned_cols=23 Identities=35% Similarity=0.617 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|.||.||||||++-.+
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46888999999999999988654
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.79 E-value=0.39 Score=43.98 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.|+.||||||++-.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998766543
No 305
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=85.77 E-value=0.23 Score=48.12 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467889999999999999886543
No 306
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.65 E-value=0.6 Score=47.82 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.8
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
..+..+.|.||+||||||++-+++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367889999999999999988877654
No 307
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=85.65 E-value=0.39 Score=45.94 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999886543
No 308
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.64 E-value=0.43 Score=50.62 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=36.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSR 76 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~ 76 (650)
+..++.++|.|++|+|||+++.+++...... +.+++++.-- .-..|+..|+..
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECSS-SCTTHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEECC-CCHHHHHHHHHH
Confidence 4567899999999999999888887765443 5577776432 334455555533
No 309
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.58 E-value=0.47 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=16.8
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..++|+|||||||||+.-...
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998765443
No 310
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.57 E-value=0.46 Score=45.01 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...+.|.||+||||||++-.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999988765433
No 311
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=85.56 E-value=0.4 Score=43.99 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...+++.|++||||||+.-.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998665433
No 312
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=85.54 E-value=0.62 Score=47.81 Aligned_cols=40 Identities=25% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+..++.++|.|++|+|||+++.+++..... .+.+++++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~-~g~~vlyid~ 99 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDA 99 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 346789999999999999988887765432 3456776644
No 313
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.52 E-value=0.28 Score=47.90 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999886543
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.45 E-value=0.41 Score=44.65 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+..+++.|+.||||||++-.+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999987765443
No 315
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.44 E-value=0.82 Score=46.44 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARV 74 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v 74 (650)
.+++..+..++.++|.|++|+|||+++.+++..... .+.+++++.. -.-..|+..|+
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rl 93 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRA 93 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHH
Confidence 344444667889999999999999888877765433 4557777643 23345555555
No 316
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.43 E-value=0.28 Score=48.06 Aligned_cols=24 Identities=42% Similarity=0.663 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHH
Confidence 478899999999999999886543
No 317
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=85.39 E-value=0.32 Score=47.14 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~ 56 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQ 56 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999986643
No 318
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=85.34 E-value=0.4 Score=46.77 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999886543
No 319
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=85.28 E-value=0.5 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+++.|++||||||+.-.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998766543
No 320
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=85.23 E-value=0.71 Score=42.19 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=24.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.+..+++.|+.||||||++-....... ..++.+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~-~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ-KEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 456799999999999998876544332 224455554
No 321
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.13 E-value=0.42 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.645 Sum_probs=20.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999886543
No 322
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.09 E-value=0.54 Score=45.37 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=20.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....++|.||.||||||++-.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999998766543
No 323
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.07 E-value=0.68 Score=49.82 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.++..+..+++.||+|+|||+++-.+
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAraL 61 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARRL 61 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHHG
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHHH
Confidence 445556678899999999999999766443
No 324
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=85.06 E-value=0.37 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~ 67 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLA 67 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999986554
No 325
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.05 E-value=0.46 Score=43.24 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=18.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l 46 (650)
.+..+++.|+.||||||++-.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 46678999999999999876543
No 326
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.03 E-value=0.42 Score=51.70 Aligned_cols=59 Identities=15% Similarity=0.127 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHH
Q 041899 16 EQVLRAVQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVS 75 (650)
Q Consensus 16 ~~~l~~l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~ 75 (650)
.+++..+..+..++|.|++|+|||+++.+++.......+.+++++.- ..-..++..|+.
T Consensus 233 D~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~-E~s~~~l~~r~~ 291 (503)
T 1q57_A 233 NDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML-EESVEETAEDLI 291 (503)
T ss_dssp HHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES-SSCHHHHHHHHH
T ss_pred hHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec-cCCHHHHHHHHH
Confidence 33443456788999999999999999888887764433456776543 223456666653
No 327
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.03 E-value=0.51 Score=47.90 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=16.9
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..++|+|||||||||+.-.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La 28 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVA 28 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHH
Confidence 478999999999998765443
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=84.98 E-value=0.47 Score=43.94 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.|++||||||++-.....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5789999999999998766543
No 329
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.89 E-value=0.91 Score=43.94 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999887655433
No 330
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=84.84 E-value=0.36 Score=47.20 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999886553
No 331
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.82 E-value=0.97 Score=46.39 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
....+++.||||+|||+++-.+..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999987655443
No 332
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.79 E-value=0.31 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|.||.||||||++-.+
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46888999999999999988654
No 333
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.76 E-value=0.95 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+..++|.|+.||||||++-.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999998766543
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=84.74 E-value=0.31 Score=47.85 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=19.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|.||.||||||++-.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 47889999999999999988654
No 335
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=84.70 E-value=0.47 Score=44.32 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..+..+.|.|++||||||++-.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4456778999999999999886554
No 336
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=84.67 E-value=0.52 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+++.|+.||||||+.-.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999876654
No 337
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=84.64 E-value=0.39 Score=46.67 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=20.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~ 50 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILA 50 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999986654
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=84.58 E-value=0.51 Score=42.44 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.|++||||||+.-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988665433
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.51 E-value=0.58 Score=43.45 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=18.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.|++||||||+.-.+...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998665443
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=84.38 E-value=0.52 Score=44.59 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...++|.|++||||||+.-.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998766544
No 341
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.37 E-value=0.68 Score=56.84 Aligned_cols=55 Identities=24% Similarity=0.285 Sum_probs=42.1
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCCccC
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGVKLG 83 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~~~g 83 (650)
.++.+.|.||+||||||++..++.+. ...++.++++.+--++.... ++.+|.++.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~-~~~g~~~~~i~~e~~~~~~~----~~~~Gv~~~ 1484 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA-QREGKTCAFIDAEHALDPIY----ARKLGVDID 1484 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEECTTSCCCHHH----HHHTTCCGG
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEEecCCCCCHHH----HHHcCCCHH
Confidence 46889999999999999998888775 33577899998876665554 455676554
No 342
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=84.27 E-value=0.63 Score=43.19 Aligned_cols=23 Identities=30% Similarity=0.641 Sum_probs=18.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.|++||||||+.-.+...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998665544
No 343
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=84.26 E-value=1.1 Score=53.96 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=39.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcccCC-----------CCeEEEecchHHHHHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEAGYTK-----------HGKVGCTQPRRVAAISVAARVSREM 78 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~~~~~-----------~~~ilv~~P~r~la~q~~~~v~~~~ 78 (650)
..+|.|.-|||||+.+..-++...... -.+|+++.=|+.+|.++.+|+.+.+
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 459999999999966554444332211 2389999999999999999998765
No 344
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=84.22 E-value=0.59 Score=43.95 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+++.|++||||||++-.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999987665433
No 345
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.21 E-value=0.73 Score=46.80 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=18.9
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+||||++-.+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999888665443
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=84.16 E-value=0.51 Score=43.48 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=17.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|+.||||||++-.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999876543
No 347
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=84.16 E-value=0.5 Score=45.84 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~ 47 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMA 47 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 468889999999999999886543
No 348
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.15 E-value=1.2 Score=42.43 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.+..+++.|+.||||||++..+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999987765543
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.05 E-value=0.82 Score=42.53 Aligned_cols=31 Identities=29% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHHHHHH-----cCCeEEEEcCCCChHHHHHHHHH
Q 041899 16 EQVLRAVQ-----ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 16 ~~~l~~l~-----~~~~vii~apTGsGKT~~ip~~l 46 (650)
+++.+.+. .+..+.|.|+.||||||++-.+.
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34555554 34578999999999999876554
No 350
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=84.02 E-value=0.53 Score=43.10 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.|++||||||+.-.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999988665443
No 351
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.96 E-value=0.65 Score=42.32 Aligned_cols=23 Identities=22% Similarity=0.422 Sum_probs=19.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..++++|+.||||||++..++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999988776654
No 352
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=83.73 E-value=0.43 Score=46.98 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=20.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||.||||||++-.+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~ 66 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQ 66 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHh
Confidence 3478899999999999999886543
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.70 E-value=0.71 Score=42.05 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..++|+|++||||||+.-.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999988665443
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=83.63 E-value=0.6 Score=41.75 Aligned_cols=21 Identities=24% Similarity=0.213 Sum_probs=17.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|+.||||||+.-.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999998866544
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.53 E-value=0.6 Score=42.25 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.|+.||||||+.-.....
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999988665433
No 356
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.42 E-value=0.59 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+|+|||||||||++-.+.+
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999866543
No 357
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.34 E-value=0.6 Score=48.46 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=16.5
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..++|+||||||||++.-...
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 468899999999997764443
No 358
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.34 E-value=0.6 Score=44.30 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++||||||++-.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999998766543
No 359
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.29 E-value=0.75 Score=46.37 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=22.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
..+..++|.||+|+|||+++.+++...
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999888887653
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.20 E-value=0.62 Score=42.71 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=17.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|+.||||||+.-.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999998866543
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=83.15 E-value=0.36 Score=45.20 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.++|.|+.||||||++-.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999998766543
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.10 E-value=0.67 Score=43.46 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..+..+++.|+.||||||++-.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 4567789999999999999886554
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.07 E-value=0.5 Score=42.98 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
...+++.|+.||||||+.-.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999998765433
No 364
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.07 E-value=0.69 Score=43.62 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+++.|++||||||+.-.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999998766544
No 365
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.06 E-value=0.61 Score=43.56 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=16.4
Q ss_pred CeEEEEcCCCChHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~ 45 (650)
+.+++.||+|+|||+.+-.+
T Consensus 59 n~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999877443
No 366
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.06 E-value=0.88 Score=46.83 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+..++.++|.||+|+|||+++.+++..... .+++++|+..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~ 110 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQK-AGGTCAFIDA 110 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEES
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHH-CCCeEEEEEC
Confidence 345788999999999999888877765432 3456777644
No 367
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=83.05 E-value=0.81 Score=43.67 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=20.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
....+++.|++||||||++-.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999998766544
No 368
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=82.73 E-value=0.73 Score=44.80 Aligned_cols=24 Identities=25% Similarity=0.630 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLL 52 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 468889999999999999886543
No 369
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.55 E-value=0.42 Score=47.58 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=19.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|.||.||||||++-.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 36788999999999999988654
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=82.50 E-value=0.78 Score=44.47 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+..+.|.||.||||||++-.+...
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999988666543
No 371
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.41 E-value=0.54 Score=44.87 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~ 45 (650)
.+..+.|.|+.||||||++-.+
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999987654
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=82.11 E-value=0.71 Score=44.66 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+||||++-.+...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 44899999999999888665543
No 373
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.02 E-value=0.68 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
...++++|++||||||++-.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4578999999999999876544
No 374
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.00 E-value=0.65 Score=45.04 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
++.++|.|+.||||||+.-.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998866544
No 375
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.74 E-value=0.75 Score=42.82 Aligned_cols=19 Identities=42% Similarity=0.609 Sum_probs=16.4
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~ 45 (650)
.+.|.||.||||||+.-.+
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999988655
No 376
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=81.72 E-value=0.57 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHHh
Confidence 468889999999999999886554
No 377
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=81.67 E-value=0.71 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.652 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
....+|+||||+|||+++..+.+
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999988876654
No 378
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.62 E-value=0.74 Score=46.29 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=19.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..+..+.|.||+||||||++-.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHH
Confidence 456688999999999999886553
No 379
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=81.56 E-value=0.66 Score=44.70 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..+..+-|.||.||||||++-.+.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~ 46 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIM 46 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3466788999999999999886554
No 380
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=81.54 E-value=1.3 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhc
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+.+++.||+|+|||+++-.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999998776555443
No 381
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.45 E-value=0.81 Score=42.49 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.8
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+.|.|+.||||||++-.+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58899999999999876543
No 382
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=81.34 E-value=0.62 Score=44.90 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.1
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
.. +.+.|.||.||||||++-.+.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHh
Confidence 35 788999999999999986654
No 383
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=81.02 E-value=0.74 Score=45.01 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~ 45 (650)
++.+.|.||.||||||++-.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 788999999999999988654
No 384
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=81.01 E-value=1.4 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 041899 27 VVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~~ 49 (650)
..+++|++|||||+.+-..+...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999998766555443
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.01 E-value=1 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..++.+.|.||+||||||++-++++
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll 61 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLY 61 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999888643
No 386
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=80.93 E-value=0.89 Score=42.46 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
....+|.||+|||||+++-.+.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999988765543
No 387
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=80.87 E-value=0.67 Score=47.86 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHH
Confidence 468899999999999999886554
No 388
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=80.85 E-value=0.65 Score=47.53 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 478899999999999999986553
No 389
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.70 E-value=1.4 Score=47.37 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
++.+++|.|+||||||+.+-.++.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999987765554
No 390
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=80.67 E-value=3.6 Score=43.85 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=42.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecchHHHHHHHHHHHHHHhCC
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQPRRVAAISVAARVSREMGV 80 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P~r~la~q~~~~v~~~~~~ 80 (650)
.++...+.|-||||||+.+...+... ++.+++++|....|.++++.+...++.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~----~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERH----AGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHS----SSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 45678999999999998776666442 457899999999999999999765543
No 391
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=80.27 E-value=0.68 Score=48.08 Aligned_cols=24 Identities=42% Similarity=0.668 Sum_probs=20.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHh
Confidence 478899999999999999986554
No 392
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=80.25 E-value=0.71 Score=47.33 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHH
Confidence 467889999999999999886554
No 393
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.25 E-value=0.67 Score=44.94 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=18.7
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..+++.|++||||||++-.+...
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999988765443
No 394
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.22 E-value=0.89 Score=42.00 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=17.3
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..+.|.|++||||||+.-.+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999886544
No 395
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=80.15 E-value=1 Score=49.54 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=25.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..|+.+.|+||+||||||++-...-.. ....|.|.+
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~ 402 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICL 402 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEE
Confidence 3578999999999999999986654322 123455544
No 396
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=80.03 E-value=1.2 Score=45.30 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=28.5
Q ss_pred HHHHHH----HcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 17 QVLRAV----QENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 17 ~~l~~l----~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
.+++.+ ..+..+.|.||+||||||++-.+.-.. ...++++.+.
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~ 89 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVL 89 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEE
Confidence 455554 356789999999999999987765332 1224455443
No 397
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=80.01 E-value=1.8 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.0
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+++.|+.||||||++-....
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999999999876543
No 398
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=79.92 E-value=0.75 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHh
Confidence 467889999999999999886553
No 399
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.88 E-value=1.4 Score=47.81 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=29.1
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
+..+..+.|.||+||||||++-+++..... .+.+++++.+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ 317 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACA-NKERAILFAY 317 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHT-TTCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 457889999999999999988877654322 3445666544
No 400
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=79.74 E-value=1 Score=45.25 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+..++|.||+|+|||+++-++..+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999888777654
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=79.71 E-value=0.82 Score=43.01 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=17.5
Q ss_pred CCeEEEEcCCCChHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~ 45 (650)
+..+.|.|+.||||||++-.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 346899999999999988654
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=79.61 E-value=0.67 Score=47.31 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHH
Confidence 467899999999999999886553
No 403
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=79.60 E-value=0.97 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=17.0
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..+.|.||+||||||++-.+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998875443
No 404
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=79.59 E-value=1.6 Score=45.53 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=17.8
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+.|.||+|+||||++-.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~ 90 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLR 90 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 89999999999999987654
No 405
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=79.38 E-value=0.98 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+||||++-.+...
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 34899999999999888655543
No 406
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=79.11 E-value=0.82 Score=47.10 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH
Confidence 467889999999999999886553
No 407
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=79.00 E-value=0.81 Score=42.50 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=18.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQ 44 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~ 44 (650)
..+..+.+.|++|+||||++-.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~ 45 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNT 45 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3566799999999999988744
No 408
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.00 E-value=0.92 Score=46.85 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.9
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..++.+++.||+||||||++-.+.-
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4678999999999999998876553
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.75 E-value=2.7 Score=39.51 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+++.|+.||||||++-....
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999876543
No 410
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=78.67 E-value=1 Score=44.23 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+||||||++-.+.-.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 44999999999999887655443
No 411
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=78.63 E-value=1.8 Score=46.14 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=21.0
Q ss_pred HHHHHH--HcCCeEEEEcCCCChHHHHHHHH
Q 041899 17 QVLRAV--QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 17 ~~l~~l--~~~~~vii~apTGsGKT~~ip~~ 45 (650)
.+++.+ ....++++.||+|+|||+++-.+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~l 221 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGL 221 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHH
Confidence 344445 34568999999999999776443
No 412
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=78.59 E-value=0.88 Score=46.67 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~ 75 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVN 75 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHh
Confidence 468899999999999999876544
No 413
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.22 E-value=1.3 Score=41.73 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=25.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEecc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 62 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~~P 62 (650)
.+..+++.|+.||||||++-........ ...++-.|
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~---~~~~~~ep 39 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP---NCKLLKFP 39 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS---SEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc---cceEEEec
Confidence 4678999999999999999776544321 23445566
No 414
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=77.98 E-value=1.3 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.609 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHH
Confidence 468899999999999999886553
No 415
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=77.94 E-value=1.1 Score=42.61 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=18.0
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..+..+++.|+.||||||++-....
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34678899999999999999876543
No 416
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=77.89 E-value=1.2 Score=43.77 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=17.4
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
++.|.||+||||||++-.+.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999876553
No 417
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=77.88 E-value=1.5 Score=44.69 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
...+.|.|++|+||||++-.++-.. ...++++.++
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~-~~~~~~v~V~ 108 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML-TERGHKLSVL 108 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh-hhcCCeEEEE
Confidence 4578999999999999998776433 1224455444
No 418
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=77.80 E-value=2.1 Score=42.74 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=21.6
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.+.||+|+||||++-.+.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH
Confidence 4467889999999999999997766
No 419
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=77.77 E-value=0.68 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.4
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|.||.||||||++-.+.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 468899999999999999986553
No 420
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.74 E-value=1.1 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+-|.||.||||||++-.+.-
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999998865543
No 421
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=77.58 E-value=1.4 Score=38.57 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999998877764
No 422
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=77.50 E-value=2.1 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.1
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+.+++.||+|+|||+++-.+..+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 57999999999999777544433
No 423
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=77.48 E-value=1.8 Score=44.27 Aligned_cols=25 Identities=20% Similarity=0.520 Sum_probs=21.3
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
...++.+.+.||+|+||||++-.++
T Consensus 212 ~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 212 ALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred hcCCCEEEEECCCCccHHHHHHHHh
Confidence 4578899999999999999986655
No 424
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=77.41 E-value=2.1 Score=39.99 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=23.8
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe-cch
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT-QPR 63 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~-~P~ 63 (650)
+-+++.|+-|||||||+-..... +.++..++.+ .|.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~--L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR--LVKDYDVIMTREPG 39 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH--HTTTSCEEEEESST
T ss_pred CEEEEECCCCCcHHHHHHHHHHH--HHCCCCEEEeeCCC
Confidence 45788999999999998655432 2334445443 564
No 425
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=77.37 E-value=1.2 Score=44.17 Aligned_cols=22 Identities=27% Similarity=0.647 Sum_probs=18.0
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+++.|++||||||+.-.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999998866543
No 426
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.36 E-value=1.3 Score=40.98 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+-.+.|+|+.||||||+.-.+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999998865543
No 427
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=77.33 E-value=1.2 Score=45.15 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=18.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
....+|+||+|||||+++-.+.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3567999999999999887543
No 428
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=77.18 E-value=1.5 Score=41.85 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=19.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..-.+.|.||+||||||+.-.+...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999988765443
No 429
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=77.10 E-value=1.4 Score=45.31 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+++.||+|+|||+++-.+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999977755443
No 430
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=77.04 E-value=0.8 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.7
Q ss_pred HcCCeEEEEcCCCChHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~ 45 (650)
..++.+.|+||+||||||++-..
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHH
Confidence 47889999999999999987543
No 431
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.86 E-value=2.2 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=18.5
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+-+++.||+|+|||+++-....+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 367999999999999776544443
No 432
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.67 E-value=0.9 Score=55.12 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEE
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC 59 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv 59 (650)
+..|+.+-|+|||||||||++-....-. ....|.|.+
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~i 1138 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFI 1138 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEE
Confidence 3578899999999999999886543221 123456555
No 433
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=76.62 E-value=1.5 Score=38.63 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999998877664
No 434
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=76.49 E-value=1.5 Score=38.45 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998776643
No 435
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=76.27 E-value=3.4 Score=39.54 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+..+++.|+.||||||++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999998766443
No 436
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=76.10 E-value=1.5 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|+.|+||||++-.+.-
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 478999999999999877654
No 437
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.92 E-value=1.6 Score=39.75 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
-.+++.|++|+|||+++-.+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999998776643
No 438
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.84 E-value=0.81 Score=44.57 Aligned_cols=24 Identities=33% Similarity=0.427 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+.+++.||+|+|||+++-.+..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999877655443
No 439
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=75.77 E-value=1.2 Score=47.42 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=21.2
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|.||.||||||++-.+.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~ 159 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLC 159 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHh
Confidence 4578999999999999999886554
No 440
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=75.73 E-value=1.3 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
++.+.|.||.||||||++-.+.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998876543
No 441
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=75.68 E-value=1.6 Score=40.03 Aligned_cols=22 Identities=27% Similarity=0.721 Sum_probs=18.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|+.|+||||++-.+.-.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5799999999999998776543
No 442
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=75.53 E-value=2.5 Score=40.78 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=24.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
..+++.|..|+||||.+-.+..... .+.+++++
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vv 47 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYV 47 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEE
Confidence 4688999999999998877765543 34456554
No 443
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.47 E-value=2.3 Score=40.32 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
++++.++.|+||||........
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999886555443
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=75.41 E-value=1.7 Score=38.88 Aligned_cols=22 Identities=36% Similarity=0.842 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999998776643
No 445
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.29 E-value=1.8 Score=47.08 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=20.3
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+..+++.|+.||||||++-...-
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHH
Confidence 4678899999999999988765543
No 446
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=75.24 E-value=1.7 Score=38.02 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998876654
No 447
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=75.17 E-value=0.95 Score=49.87 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=20.2
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..++.+.|+||+||||||++-...
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~ 390 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIP 390 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 468899999999999999885543
No 448
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.15 E-value=1.7 Score=38.24 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999998776643
No 449
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=75.09 E-value=1.8 Score=38.23 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999998777644
No 450
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=74.90 E-value=3.5 Score=38.12 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=22.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcccCCCCeEEE-ecchHH
Q 041899 28 VVIVGETGSGKTTQIPQYLHEAGYTKHGKVGC-TQPRRV 65 (650)
Q Consensus 28 vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv-~~P~r~ 65 (650)
+++.|+-|||||||+-...-.. ...+..+++ -.|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L-~~~g~~v~~treP~~t 40 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYL-EKRGKKVILKREPGGT 40 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-HHTTCCEEEEESSCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHCCCcEEEEECCCCC
Confidence 5788999999999987653322 222334444 456543
No 451
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=74.66 E-value=1.8 Score=37.95 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999988776643
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=74.57 E-value=2.4 Score=40.45 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCeEEEEcCCCChHHHHHHHHHHh
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
+..+++.|+.||||||++-.....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 346899999999999998665433
No 453
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=74.57 E-value=1.8 Score=38.35 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.5
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+++.|++|+|||+++-.+.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999887765
No 454
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=74.56 E-value=1.7 Score=38.27 Aligned_cols=21 Identities=19% Similarity=0.707 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 489999999999998877764
No 455
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=74.43 E-value=1.2 Score=49.15 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..|+.+.|+||+||||||++-...
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~ 390 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLIT 390 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 478899999999999999986654
No 456
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=74.37 E-value=1.6 Score=42.05 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=17.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
..+.|.|+.||||||+.-.+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999998765543
No 457
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=74.31 E-value=1.7 Score=40.19 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.6
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+.|.|+.||||||+.-.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999998866543
No 458
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=74.25 E-value=1.9 Score=38.04 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998876653
No 459
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.21 E-value=2.8 Score=45.46 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=20.4
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
+...++|.|.||||||+.+-.++...
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sL 238 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSI 238 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999997776665543
No 460
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=74.20 E-value=1.3 Score=42.99 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=18.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQY 45 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~ 45 (650)
....+++.|+.||||||++-..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999998544
No 461
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=74.01 E-value=1.9 Score=38.36 Aligned_cols=22 Identities=27% Similarity=0.723 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998776643
No 462
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.00 E-value=2 Score=43.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=18.7
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
....+++.||+|+|||+++-.+..
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 345699999999999977755443
No 463
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=73.93 E-value=1.6 Score=42.96 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.7
Q ss_pred CeEEEEcCCCChHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l 46 (650)
..+.|+|+.||||||+.-.+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999886654
No 464
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=73.78 E-value=2.8 Score=42.87 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=23.3
Q ss_pred CeEEEEcCCCChHHHHHHHHHHhcccCCCCeEEEe
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHEAGYTKHGKVGCT 60 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~~~~~~~~~ilv~ 60 (650)
..+.++|++|+||||++-.+..... ..+.++.++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~-~~g~kV~vi 113 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLI-ERGHRVAVL 113 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH-TTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hCCCceEEE
Confidence 3789999999999998877654432 224444443
No 465
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=73.76 E-value=2.3 Score=42.40 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.7
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.+.||+|+||||++-.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhc
Confidence 4568889999999999999886553
No 466
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=73.59 E-value=2 Score=37.73 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=17.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999998877664
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=73.48 E-value=0.98 Score=49.92 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=20.9
Q ss_pred HHcCCeEEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~vii~apTGsGKT~~ip~~l 46 (650)
+..++.+.|+||+||||||++-...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHT
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Confidence 3578899999999999999986554
No 468
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=73.47 E-value=1.8 Score=39.48 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCChHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l 46 (650)
.-.+++.|++|+|||+++-.++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3569999999999999887765
No 469
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=73.45 E-value=2 Score=37.87 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999998776643
No 470
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=73.35 E-value=1.8 Score=38.81 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
+..+++.|++|+|||+++-.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999998877653
No 471
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=73.18 E-value=1.8 Score=39.26 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=18.6
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
-.+++.|++|+|||+++-.++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4689999999999999877654
No 472
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=73.13 E-value=1.3 Score=46.34 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=20.3
Q ss_pred HHcCCe--EEEEcCCCChHHHHHHHHH
Q 041899 22 VQENQV--VVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 22 l~~~~~--vii~apTGsGKT~~ip~~l 46 (650)
+..|.. +.|.||+|+||||++-.+.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~ 63 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLF 63 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHh
Confidence 457888 9999999999999986654
No 473
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.89 E-value=2 Score=40.00 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.2
Q ss_pred CeEEEEcCCCChHHHHHHHHHHh
Q 041899 26 QVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~~ 48 (650)
-.+++.|++|+|||+++-.++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999988776643
No 474
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=72.83 E-value=3.7 Score=48.95 Aligned_cols=79 Identities=8% Similarity=0.185 Sum_probs=64.0
Q ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCC-CccccCcCCC
Q 041899 216 ASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATN-IAETSLTIDG 294 (650)
Q Consensus 216 ~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~-i~e~gidip~ 294 (650)
.+.+++|.+|++.-+.+.++.+.+.+.. .++.+..+++..+..++..+++....|..+|+|+|. .+...+.+.+
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~-----~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-----WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT-----TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhc-----CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccc
Confidence 3568999999999999999888876432 145678889999999988888888889999999995 4555688888
Q ss_pred eEEEE
Q 041899 295 IKYVV 299 (650)
Q Consensus 295 v~~VI 299 (650)
+.+||
T Consensus 726 l~lvI 730 (1151)
T 2eyq_A 726 LGLLI 730 (1151)
T ss_dssp EEEEE
T ss_pred cceEE
Confidence 88866
No 475
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=72.72 E-value=2.5 Score=37.65 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.8
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
....+++.|++|+|||+++-.++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345789999999999999877654
No 476
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=72.70 E-value=2.2 Score=39.94 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=21.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHhc
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHEA 49 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~~ 49 (650)
.-..+++.|++|+||||++-.++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34579999999999999988777654
No 477
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=72.55 E-value=2.1 Score=38.61 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.+.-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999877653
No 478
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.41 E-value=1.7 Score=43.81 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=18.4
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
...+|+||+|||||+++-.+..
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4889999999999988876543
No 479
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=72.38 E-value=2.2 Score=37.51 Aligned_cols=21 Identities=24% Similarity=0.640 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999877664
No 480
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=72.37 E-value=2.1 Score=44.87 Aligned_cols=23 Identities=48% Similarity=0.589 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCChHHHHHHHHHH
Q 041899 25 NQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 25 ~~~vii~apTGsGKT~~ip~~l~ 47 (650)
...++++|++||||||++-.+..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999998866543
No 481
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=72.35 E-value=2.2 Score=40.64 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.5
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+.|.|+.||||||+.-.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999998866543
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=72.28 E-value=2.3 Score=37.77 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+++.|++|+|||+++-.++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 58999999999999887654
No 483
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=72.14 E-value=2.3 Score=37.56 Aligned_cols=20 Identities=40% Similarity=0.622 Sum_probs=17.1
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+++.|++|+|||+++-.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999887664
No 484
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.99 E-value=2.3 Score=38.53 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+.-+++.|+.|+||||++..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999988866654
No 485
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=71.94 E-value=2.5 Score=42.88 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=20.2
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
++..+.+.|++|+||||++..+...
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999988766543
No 486
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=71.92 E-value=2 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+++.||+|+|||+++-.+..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999987755443
No 487
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=71.64 E-value=5.2 Score=41.49 Aligned_cols=79 Identities=9% Similarity=0.125 Sum_probs=58.0
Q ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHHHhhcCCCCceEEEeecCCCCHHHHhhhcCCCCCCCcEEEEeCCCcc----ccC
Q 041899 215 QASGDILVFLTGQEEIETVEEILKERIRKLGTKIGELIVCPVYANLPTELQAKIFVPTPDGARKVVLATNIAE----TSL 290 (650)
Q Consensus 215 ~~~~~iLVF~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~~lh~~l~~~~r~~i~~~~~~g~~kilvaT~i~e----~gi 290 (650)
..++.+||.+|+++-+.+.++.+.+.. . .++.+..+||+.+..++....+....|..+|+|+|+-.- .-+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~----~--~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA----D--EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC----C--SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc----c--CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 457899999999999999999888742 1 367889999999997776666666677789999996211 113
Q ss_pred cCCCeEEEE
Q 041899 291 TIDGIKYVV 299 (650)
Q Consensus 291 dip~v~~VI 299 (650)
+..++.+||
T Consensus 136 ~~~~~~~iV 144 (414)
T 3oiy_A 136 SQKRFDFVF 144 (414)
T ss_dssp TTCCCSEEE
T ss_pred ccccccEEE
Confidence 445666655
No 488
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=71.59 E-value=2.2 Score=37.91 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999877664
No 489
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=71.53 E-value=2.3 Score=40.54 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=18.5
Q ss_pred CeEEEEcCCCChHHHHHHHHHH
Q 041899 26 QVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 26 ~~vii~apTGsGKT~~ip~~l~ 47 (650)
-.+++.|++|+|||+++-.++-
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999876653
No 490
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=71.43 E-value=1.9 Score=39.06 Aligned_cols=20 Identities=55% Similarity=0.820 Sum_probs=17.3
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+++.|++|+|||+++-.++
T Consensus 4 kv~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999887664
No 491
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=71.31 E-value=2.3 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=18.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999988776643
No 492
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.26 E-value=4.1 Score=39.61 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=16.2
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l 46 (650)
.+++.||+|+|||+.+-.+.
T Consensus 106 ~~~l~GppgtGKt~~a~ala 125 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIA 125 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999997665433
No 493
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=71.13 E-value=3.4 Score=47.00 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=22.2
Q ss_pred HHHHHHHH--cCCeEEEEcCCCChHHHHHHHHH
Q 041899 16 EQVLRAVQ--ENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 16 ~~~l~~l~--~~~~vii~apTGsGKT~~ip~~l 46 (650)
.++++.+. ...++++.||+|+|||+++-.+.
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHH
Confidence 34455553 45689999999999998775443
No 494
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=70.87 E-value=2.5 Score=38.03 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.0
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999998877664
No 495
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=70.79 E-value=2.5 Score=37.75 Aligned_cols=21 Identities=24% Similarity=0.732 Sum_probs=18.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 041899 27 VVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~ 47 (650)
.+++.|++|+|||+++-.++.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999998877654
No 496
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=70.75 E-value=2.5 Score=37.57 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999998776643
No 497
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=70.73 E-value=2.5 Score=38.28 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=18.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 041899 27 VVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 27 ~vii~apTGsGKT~~ip~~l~~ 48 (650)
.+++.|++|+|||+++-.++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999998777643
No 498
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=70.70 E-value=2.2 Score=40.42 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=19.3
Q ss_pred cCCeEEEEcCCCChHHHHHHHHHH
Q 041899 24 ENQVVVIVGETGSGKTTQIPQYLH 47 (650)
Q Consensus 24 ~~~~vii~apTGsGKT~~ip~~l~ 47 (650)
.+..+++.|+.||||||++-....
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356788999999999999866543
No 499
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=70.65 E-value=1.3 Score=49.00 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=20.5
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHH
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYL 46 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l 46 (650)
..|+.+.|+||+||||||++-...
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 468889999999999999986653
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.64 E-value=1.4 Score=53.34 Aligned_cols=26 Identities=38% Similarity=0.579 Sum_probs=21.6
Q ss_pred HcCCeEEEEcCCCChHHHHHHHHHHh
Q 041899 23 QENQVVVIVGETGSGKTTQIPQYLHE 48 (650)
Q Consensus 23 ~~~~~vii~apTGsGKT~~ip~~l~~ 48 (650)
..|+.+.|+||+||||||++-..+-.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccc
Confidence 47889999999999999998665543
Done!