BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041900
(101 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 67/99 (67%)
Query: 3 LASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISF 62
+A G+ YR+ YAK AM L + YL EAKW QNY P+ +E+ A AL T +L+ SF
Sbjct: 359 VAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF 418
Query: 63 VGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
VGMGDIVT E+F+W S+P+ ++AS+ + R M+D+ HK
Sbjct: 419 VGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHK 457
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 61.6 bits (148), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ +L+T
Sbjct: 353 KELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATT 412
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 413 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 452
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 450
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 450
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 450
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 450
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 353 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 412
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 413 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 452
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 338 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 397
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 398 SYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYE 437
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYE 450
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 1 KDLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTI 60
K+L+S G+ + + +A E MK +V++Y E+ W + Y P V EY++ AL T+ L+T
Sbjct: 351 KELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATT 410
Query: 61 SFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
S++GM T++ FEWL NP+ + AS + R+++D +++
Sbjct: 411 SYLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYE 450
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 2 DLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACP-ILSTI 60
D+ + + L Y ++++ +LV+ Y EAKW H Y P++DEY+ +A ++ A P I+S
Sbjct: 353 DILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPT 412
Query: 61 SFV 63
F
Sbjct: 413 YFT 415
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 14 YAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVT-SACPILSTISFVGMGDIVTKE 72
Y ++ L++ YL EAKW ++ + P+++EYM + ++ PILS + F + D + +E
Sbjct: 386 YLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHL-FFRLTDSIEEE 444
Query: 73 SFEWLFSNPRSVRASSAVNRLMNDI 97
+ E + VRAS + RL +D+
Sbjct: 445 AAESMHKYHDIVRASCTILRLADDM 469
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 14 YAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKES 73
Y +++ +L Y+ EA+W + + P+++EY+ + + + P + T F + D TKE+
Sbjct: 359 YLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKET 418
Query: 74 FEWLFSNPRSVRASSAVNRLMNDI 97
+ L+ VR SS V RL +D+
Sbjct: 419 VDSLYKYHDLVRWSSFVLRLADDL 442
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 2 DLASQGKLYR----LHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPIL 57
D+A +G+ + L Y + K ++ Y EA+W YVP+ +EY+ A V+ A +
Sbjct: 585 DIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTV 644
Query: 58 STISFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMSHK 101
IS + G+++T E + R ++ RL+ND +++
Sbjct: 645 VLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQ 688
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%)
Query: 12 LHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTK 71
L Y +A +L +L EAKW + PT D+Y A +S+ P+ ++ + + K
Sbjct: 366 LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKK 425
Query: 72 ESFEWLFSNPRSVRASSAVNRLMNDIMS 99
E E L + S + RL ND+ S
Sbjct: 426 EEIENLQKYHDIISRPSHIFRLCNDLAS 453
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 14 YAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGM-GDIVTKE 72
+ ++ ++ + Y EA+W YVPT+DEY+ + + IL + M G ++++E
Sbjct: 629 FFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQE 688
Query: 73 SFEWLFSNPRSV--RASSAVNRLMNDIMSHK 101
+ E + R V +S ++RL +D ++K
Sbjct: 689 ALEKVDYPGRRVLTELNSLISRLADDTKTYK 719
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 26 YLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSVR 85
Y+ E +W Y+PT +EY+ ++ + + MG++V + E +
Sbjct: 582 YVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFE 641
Query: 86 ASSAVNRLMNDIMSHK 101
S RL ND +++
Sbjct: 642 LVSLSWRLTNDTKTYQ 657
>pdb|3V1X|A Chain A, Crystal Structure Of 2-Methylisoborneol Synthase From
Streptomyces Coelicolor A3(2) In Complex With Mg2+ And
2-Fluorogeranyl Diphosphate
Length = 461
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 5 SQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTS--ACPILS 58
SQ YR M L YL E W +VP V EY+A+ + CP ++
Sbjct: 283 SQSDRYR-----HDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTIT 333
>pdb|3V1V|A Chain A, Crystal Structure Of 2-Methylisoborneol Synthase From
Streptomyces Coelicolor A3(2) In Complex With Mg2+ And
Geranyl-S-Thiolodiphosphate
Length = 433
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 5 SQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTS--ACPILS 58
SQ YR M L YL E W +VP V EY+A+ + CP ++
Sbjct: 255 SQSDRYR-----HDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFNNFRPCPTIT 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,643,071
Number of Sequences: 62578
Number of extensions: 84131
Number of successful extensions: 255
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 19
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)