Query 041900
Match_columns 101
No_of_seqs 123 out of 688
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6E-33 2.1E-37 219.4 9.5 100 2-101 358-457 (554)
2 3m00_A Aristolochene synthase; 100.0 2.4E-32 8.1E-37 215.8 8.1 99 2-101 354-452 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2.2E-32 7.6E-37 216.2 7.4 99 3-101 357-455 (555)
4 2ong_A 4S-limonene synthase; m 100.0 8.8E-31 3E-35 206.7 8.6 100 2-101 347-446 (543)
5 2j5c_A 1,8-cineole synthase; t 100.0 1E-30 3.6E-35 207.2 8.5 100 2-101 374-473 (569)
6 1n1b_A (+)-bornyl diphosphate 100.0 2.3E-30 8E-35 204.5 8.1 99 3-101 354-453 (549)
7 3s9v_A Abietadiene synthase, c 100.0 8.4E-30 2.9E-34 207.7 7.7 98 3-101 590-688 (785)
8 3p5p_A Taxadiene synthase; cla 100.0 1.3E-29 4.6E-34 206.0 7.9 98 3-101 559-657 (764)
9 3sdr_A Alpha-bisabolene syntha 100.0 1.8E-29 6E-34 206.5 8.5 99 3-101 618-719 (817)
10 3kb9_A EPI-isozizaene synthase 99.9 4.1E-23 1.4E-27 156.4 5.1 91 10-101 177-267 (382)
11 1ps1_A Pentalenene synthase; a 99.9 6E-23 2E-27 151.8 5.1 94 7-101 131-225 (337)
12 1di1_A Aristolochene synthase; 99.8 8.2E-22 2.8E-26 143.4 6.1 85 13-101 127-211 (300)
13 3v1v_A 2-MIB synthase, 2-methy 99.8 2.5E-21 8.7E-26 149.4 4.3 95 5-101 250-344 (433)
14 3bny_A Aristolochene synthase; 99.8 1.1E-20 3.7E-25 138.9 4.1 85 13-101 141-225 (320)
15 3pya_A ENT-copalyl diphosphate 98.9 4.9E-10 1.7E-14 91.1 1.8 75 5-101 580-654 (727)
16 1yyq_A Trichodiene synthase; t 95.4 0.015 5.3E-07 43.8 4.2 83 10-100 145-230 (374)
17 3lmd_A Geranylgeranyl pyrophos 91.1 0.74 2.5E-05 34.5 6.9 82 10-98 160-243 (360)
18 2q80_A Geranylgeranyl pyrophos 88.9 3.9 0.00013 29.6 9.1 81 10-98 111-192 (301)
19 3nf2_A Putative polyprenyl syn 88.8 2.8 9.4E-05 31.1 8.4 83 11-98 144-227 (352)
20 2e8v_A Geranylgeranyl pyrophos 87.2 4.3 0.00015 29.8 8.6 83 11-98 132-217 (340)
21 3rmg_A Octaprenyl-diphosphate 87.0 3 0.0001 30.7 7.6 85 10-100 133-219 (334)
22 3aqb_B Component B of hexapren 86.5 5.2 0.00018 29.1 8.6 83 10-98 130-214 (325)
23 4dhd_A Polyprenyl synthetase; 86.2 3.6 0.00012 30.6 7.7 84 11-98 133-228 (358)
24 3mzv_A Decaprenyl diphosphate 85.5 6.3 0.00021 29.0 8.7 85 10-99 139-224 (341)
25 3ipi_A Geranyltranstransferase 85.1 3.1 0.00011 30.1 6.8 82 10-98 127-210 (295)
26 1wmw_A Geranylgeranyl diphosph 84.9 5.7 0.00019 29.0 8.1 83 11-99 131-216 (330)
27 3oyr_A Trans-isoprenyl diphosp 84.8 6.1 0.00021 29.2 8.4 86 10-100 151-237 (345)
28 1v4e_A Octoprenyl-diphosphate 84.4 5.2 0.00018 28.9 7.7 79 10-99 127-208 (299)
29 1wy0_A Geranylgeranyl pyrophos 83.9 6.1 0.00021 28.9 8.0 83 11-98 138-221 (342)
30 2ftz_A Geranyltranstransferase 82.9 6.9 0.00023 28.1 7.8 80 11-98 135-216 (284)
31 3m0g_A Farnesyl diphosphate sy 82.8 7.1 0.00024 28.2 7.9 73 20-100 147-221 (297)
32 3pko_A Geranylgeranyl pyrophos 82.6 7.8 0.00027 28.4 8.1 83 11-99 144-228 (334)
33 1uby_A FPS, farnesyl diphospha 82.4 8.7 0.0003 28.5 8.4 85 11-98 170-260 (367)
34 2qis_A Farnesyl pyrophosphate 82.1 8.6 0.00029 28.6 8.3 85 11-98 177-267 (374)
35 3tc1_A Octaprenyl pyrophosphat 79.2 14 0.00046 26.9 8.3 81 10-100 122-205 (315)
36 1yhl_A Farnesyl pyrophosphate 78.0 8.6 0.00029 28.4 7.0 85 11-98 152-253 (362)
37 2q58_A Fragment, farnesyl pyro 76.1 8.6 0.00029 28.5 6.6 84 12-98 170-257 (368)
38 1rtr_A Geranyltranstransferase 75.9 8.7 0.0003 27.7 6.4 72 20-98 148-221 (301)
39 3apz_A Geranyl diphosphate syn 73.3 10 0.00035 27.8 6.4 83 11-98 154-237 (348)
40 3lk5_A Geranylgeranyl pyrophos 72.2 23 0.00078 26.4 8.1 77 17-98 182-260 (380)
41 2h8o_A Geranyltranstransferase 71.1 13 0.00044 27.3 6.5 72 20-98 192-265 (335)
42 1rqj_A Geranyltranstransferase 68.1 16 0.00056 26.2 6.4 72 20-98 152-226 (299)
43 2her_A Fragment, farnesyl pyro 67.4 29 0.001 25.8 7.8 83 11-98 169-257 (368)
44 3mav_A Farnesyl pyrophosphate 66.2 19 0.00066 26.8 6.6 84 12-98 180-289 (395)
45 3npk_A Geranyltranstransferase 65.6 20 0.00068 25.8 6.4 73 19-98 144-218 (291)
46 3lsn_A Geranyltranstransferase 65.1 31 0.0011 24.9 7.4 72 21-98 153-226 (304)
47 3ts7_A Geranyltranstransferase 64.6 36 0.0012 24.8 7.7 73 20-98 158-232 (324)
48 3p8l_A Geranyltranstransferase 64.5 26 0.0009 25.3 6.9 73 20-99 156-230 (302)
49 3kra_B Geranyl diphosphate syn 64.3 15 0.00053 26.1 5.5 71 20-97 149-221 (274)
50 3pde_A Farnesyl-diphosphate sy 62.8 32 0.0011 25.0 7.1 72 20-98 155-228 (309)
51 3llw_A Geranyltranstransferase 62.4 19 0.00067 26.1 5.9 73 19-98 158-233 (311)
52 3lom_A Geranyltranstransferase 62.1 37 0.0013 24.6 7.3 74 20-98 158-233 (313)
53 3p8r_A Geranyltranstransferase 60.2 33 0.0011 24.7 6.7 73 20-98 158-232 (302)
54 4f62_A Geranyltranstransferase 55.0 40 0.0014 24.5 6.5 74 21-99 152-226 (317)
55 3uca_A Geranyltranstransferase 50.4 63 0.0022 23.5 6.9 73 20-98 180-254 (324)
56 2ihi_A Pyrophosphate synthase; 48.4 83 0.0028 23.5 9.1 84 11-99 179-290 (395)
57 1rh5_B Preprotein translocase 47.6 11 0.00039 21.9 2.0 37 21-57 10-47 (74)
58 2ww9_B Protein transport prote 40.8 53 0.0018 19.3 4.3 39 16-57 22-60 (80)
59 3mp7_B Preprotein translocase 37.3 9.4 0.00032 21.4 0.5 32 24-55 9-41 (61)
60 3he5_B Synzip2; heterodimeric 34.7 16 0.00056 19.2 1.2 19 83-101 33-51 (52)
61 2j1p_A Geranylgeranyl pyrophos 34.6 28 0.00096 24.9 2.8 74 21-98 161-236 (293)
62 3dyh_A Farnesyl pyrophosphate 32.4 1.5E+02 0.0052 21.9 7.8 84 11-98 180-281 (390)
63 2wwb_B SEC61gamma, protein tra 32.0 38 0.0013 19.3 2.6 24 35-58 24-47 (68)
64 2azj_A Geranylgeranyl pyrophos 30.5 90 0.0031 22.2 5.0 75 11-99 136-212 (289)
65 1v54_E Cytochrome C oxidase po 26.6 26 0.00089 21.9 1.3 20 80-99 44-63 (109)
66 3kq5_A Hypothetical cytosolic 23.7 39 0.0013 25.7 2.0 26 62-87 171-196 (393)
67 2lnm_A Protein TIC 40, chlorop 22.6 35 0.0012 18.6 1.2 15 78-92 41-55 (62)
68 2w6a_A ARF GTPase-activating p 22.3 36 0.0012 19.0 1.2 10 40-49 11-20 (63)
69 3axj_A GM27569P, translin; tra 21.7 1.3E+02 0.0044 21.0 4.3 35 32-75 100-135 (249)
70 2lyy_A Uncharacterized protein 21.7 24 0.00082 21.5 0.4 31 10-47 64-94 (96)
71 2q82_A Core protein P7; NESG, 20.3 19 0.00065 22.7 -0.3 11 89-99 111-121 (129)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=99.98 E-value=6e-33 Score=219.38 Aligned_cols=100 Identities=48% Similarity=0.831 Sum_probs=96.9
Q ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCc
Q 041900 2 DLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNP 81 (101)
Q Consensus 2 ~~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p 81 (101)
++.+|||+++++|+|++|++++++|++||||+++||+||+||||+||.+|+|+++++++++++||+.+|+|+++|+.++|
T Consensus 358 ~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p 437 (554)
T 3g4d_A 358 LVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDP 437 (554)
T ss_dssp HHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCC
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccH
Confidence 46688998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+|+++++.|+||+|||+||+
T Consensus 438 ~i~~~~~~I~RL~NDI~S~k 457 (554)
T 3g4d_A 438 KIIQASTIICRFMDDVAEHK 457 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcccchhh
Confidence 99999999999999999985
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=99.97 E-value=2.4e-32 Score=215.85 Aligned_cols=99 Identities=35% Similarity=0.639 Sum_probs=94.6
Q ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCc
Q 041900 2 DLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNP 81 (101)
Q Consensus 2 ~~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p 81 (101)
++.+|||+++++|++++|++++++|++||||+++||+|||||||+||.+|+|++++++++|+|| +.+|+|+|+|+.++|
T Consensus 354 ~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p 432 (550)
T 3m00_A 354 ELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNP 432 (550)
T ss_dssp HHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCC
T ss_pred HHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccH
Confidence 4668899899999999999999999999999999999999999999999999999999999888 789999999999999
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+|+++++.|+||+|||+||+
T Consensus 433 ~i~~~~~~I~RL~NDI~S~k 452 (550)
T 3m00_A 433 KILEASVIICRVIDDTATYE 452 (550)
T ss_dssp HHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHHhhhheeeccchhHH
Confidence 99999999999999999984
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=99.97 E-value=2.2e-32 Score=216.23 Aligned_cols=99 Identities=26% Similarity=0.346 Sum_probs=94.5
Q ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcH
Q 041900 3 LASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPR 82 (101)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~ 82 (101)
+.++++.++++|++++|++++++|++||||+++||+|||||||+||.+|+|+++++++++++||+.+|+|+++|+.++|+
T Consensus 357 ~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~ 436 (555)
T 3n0f_A 357 NLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHD 436 (555)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCH
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchH
Confidence 45566669999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCC
Q 041900 83 SVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 83 i~~~~~~i~RL~nDi~s~~ 101 (101)
|+++++.|+||+|||+||+
T Consensus 437 i~~~~~~i~RL~NDi~S~~ 455 (555)
T 3n0f_A 437 IISRPSHIFRLCNDLASAS 455 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhh
Confidence 9999999999999999974
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=99.97 E-value=8.8e-31 Score=206.68 Aligned_cols=100 Identities=26% Similarity=0.409 Sum_probs=95.3
Q ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCc
Q 041900 2 DLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNP 81 (101)
Q Consensus 2 ~~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p 81 (101)
++.+++++++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++++++++||+.+|+++++|+.++|
T Consensus 347 ~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p 426 (543)
T 2ong_A 347 DVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYH 426 (543)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTC
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccH
Confidence 34456666999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+++++++.|+||+|||+||+
T Consensus 427 ~i~~~~~~i~RL~NDi~S~~ 446 (543)
T 2ong_A 427 DLVRWSSFVLRLADDLGTSV 446 (543)
T ss_dssp HHHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHHhcccchhh
Confidence 99999999999999999985
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=99.97 E-value=1e-30 Score=207.22 Aligned_cols=100 Identities=24% Similarity=0.364 Sum_probs=94.0
Q ss_pred hhhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCc
Q 041900 2 DLASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNP 81 (101)
Q Consensus 2 ~~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p 81 (101)
++.+++++++++|++++|++++++|++||+|+++||+|||||||+||.+|+|+++++++++++||+.+|+++|+|+.++|
T Consensus 374 ~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p 453 (569)
T 2j5c_A 374 DTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYH 453 (569)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTC
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccH
Confidence 34556666999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+++++++.|+||+|||+||+
T Consensus 454 ~i~~~~~~i~RL~NDI~S~~ 473 (569)
T 2j5c_A 454 DIVRASCTILRLADDMGTSL 473 (569)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcccchhh
Confidence 99999999999999999985
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=99.96 E-value=2.3e-30 Score=204.53 Aligned_cols=99 Identities=22% Similarity=0.507 Sum_probs=92.4
Q ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhh-hhhccCCc
Q 041900 3 LASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKES-FEWLFSNP 81 (101)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~-~~w~~~~p 81 (101)
+.+++++++++|++++|++++++|++||+|+++||+|||||||+||.+|+|+++++++++++||+.+|+|+ ++|+.++|
T Consensus 354 ~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p 433 (549)
T 1n1b_A 354 ILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYH 433 (549)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTC
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccH
Confidence 44566669999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+++++++.|+||+|||+||+
T Consensus 434 ~i~~~~~~i~RL~NDi~S~~ 453 (549)
T 1n1b_A 434 DILCLAGIILRLPDDLGTSY 453 (549)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcccchhh
Confidence 99999999999999999985
No 7
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=99.96 E-value=8.4e-30 Score=207.70 Aligned_cols=98 Identities=28% Similarity=0.390 Sum_probs=93.1
Q ss_pred hhh-hCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCc
Q 041900 3 LAS-QGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNP 81 (101)
Q Consensus 3 ~~~-~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p 81 (101)
+.+ ||+ ++++|+|++|++++++|++||||+++||+|||||||+||.+|+|+++++++++++||+.+|+|+++|+..+|
T Consensus 590 ~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 668 (785)
T 3s9v_A 590 GRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRES 668 (785)
T ss_dssp HHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTTTSTTS
T ss_pred HHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhcccccH
Confidence 344 666 999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+|+++++.|+||+|||+||+
T Consensus 669 ~l~~~~~~I~RL~NDi~S~k 688 (785)
T 3s9v_A 669 RFLQLMGLTGRLVNDTKTYQ 688 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhh
Confidence 99999999999999999974
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=99.96 E-value=1.3e-29 Score=206.04 Aligned_cols=98 Identities=20% Similarity=0.321 Sum_probs=92.8
Q ss_pred hhh-hCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCc
Q 041900 3 LAS-QGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNP 81 (101)
Q Consensus 3 ~~~-~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p 81 (101)
+.+ ||+ ++++|+|++|++++++|++||||+++||+|||||||+||.+|+|++++++.++++||+.+|+|+|+|+..+|
T Consensus 559 ~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~~ 637 (764)
T 3p5p_A 559 VVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPS 637 (764)
T ss_dssp HHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTTS
T ss_pred HHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhhH
Confidence 344 676 999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred HHHHHHHHHHHHhcccccCC
Q 041900 82 RSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 82 ~i~~~~~~i~RL~nDi~s~~ 101 (101)
+|+++++.|+||+|||+||+
T Consensus 638 ~l~~~~~~I~RL~NDi~S~k 657 (764)
T 3p5p_A 638 NMFELVSLSWRLTNDTKTYQ 657 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccchH
Confidence 99999999999999999974
No 9
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=99.96 E-value=1.8e-29 Score=206.50 Aligned_cols=99 Identities=21% Similarity=0.337 Sum_probs=92.2
Q ss_pred hhhhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhh-HHHHHHHhcCCCcchhhhhhcc--C
Q 041900 3 LASQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPI-LSTISFVGMGDIVTKESFEWLF--S 79 (101)
Q Consensus 3 ~~~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~-~~~~~~~~~g~~~~~e~~~w~~--~ 79 (101)
+.++++.++++|+|++|++++++|++||||+++||+|||||||+||.+|+|+++ +++++++++|+.+|+|+|+|+. +
T Consensus 618 ~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e~~~~~s 697 (817)
T 3sdr_A 618 AEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPG 697 (817)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHHTTCCTT
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHhcccccc
Confidence 445545599999999999999999999999999999999999999999999999 8889999999999999999987 6
Q ss_pred CcHHHHHHHHHHHHhcccccCC
Q 041900 80 NPRSVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 80 ~p~i~~~~~~i~RL~nDi~s~~ 101 (101)
+|+|+++++.|+||+|||+||+
T Consensus 698 ~p~l~~~~~~I~RL~NDi~S~k 719 (817)
T 3sdr_A 698 RRVLTELNSLISRLADDTKTYK 719 (817)
T ss_dssp SCSHHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHhccchHHH
Confidence 6799999999999999999986
No 10
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=99.87 E-value=4.1e-23 Score=156.42 Aligned_cols=91 Identities=18% Similarity=0.100 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcHHHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSVRASSA 89 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~i~~~~~~ 89 (101)
....+++++|++++++|++||+|+.+|++||+||||+++.+|+|++++++.+++++|..++++++++ ...++|+++++.
T Consensus 177 ~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~ 255 (382)
T 3kb9_A 177 TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQE 255 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999999999999998 667789999999
Q ss_pred HHHHhcccccCC
Q 041900 90 VNRLMNDIMSHK 101 (101)
Q Consensus 90 i~RL~nDi~s~~ 101 (101)
|+||+|||.||+
T Consensus 256 i~rL~NDi~S~~ 267 (382)
T 3kb9_A 256 FAAWYNDLCSLP 267 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999974
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=99.87 E-value=6e-23 Score=151.84 Aligned_cols=94 Identities=18% Similarity=0.066 Sum_probs=80.3
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhcCCccc-ChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcHHHH
Q 041900 7 GKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVP-TVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSVR 85 (101)
Q Consensus 7 ~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vP-t~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~i~~ 85 (101)
.+....+++++.|++++++|+.||+|+.+|++| |++|||+++.+|+|++++++.+++++|..+|+++++. ...+++++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~ 209 (337)
T 1ps1_A 131 MTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQ 209 (337)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHH
Confidence 333567899999999999999999999999999 9999999999999999999999999999999988877 45558999
Q ss_pred HHHHHHHHhcccccCC
Q 041900 86 ASSAVNRLMNDIMSHK 101 (101)
Q Consensus 86 ~~~~i~RL~nDi~s~~ 101 (101)
+++.++||+|||.||+
T Consensus 210 ~~~~i~rL~NDl~S~~ 225 (337)
T 1ps1_A 210 IAVDVNLLLNDIASLE 225 (337)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhhHH
Confidence 9999999999999974
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=99.85 E-value=8.2e-22 Score=143.41 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcHHHHHHHHHHH
Q 041900 13 HYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSVRASSAVNR 92 (101)
Q Consensus 13 ~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~i~~~~~~i~R 92 (101)
.+.++.|+.++++|+ |++|+.+|++||++|||+++.+|+|+++++.+++++||..+|+++++ ..|+|+++++.++|
T Consensus 127 ~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~ 202 (300)
T 1di1_A 127 ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLS 202 (300)
T ss_dssp HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHH
Confidence 456777999999998 89999999999999999999999999999999999999999999999 56999999999999
Q ss_pred HhcccccCC
Q 041900 93 LMNDIMSHK 101 (101)
Q Consensus 93 L~nDi~s~~ 101 (101)
|+|||.||+
T Consensus 203 l~NDl~S~~ 211 (300)
T 1di1_A 203 VVNDIYSYD 211 (300)
T ss_dssp HHHHHHHTT
T ss_pred HHhhhHHHH
Confidence 999999985
No 13
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.82 E-value=2.5e-21 Score=149.37 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=81.4
Q ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcHHH
Q 041900 5 SQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSV 84 (101)
Q Consensus 5 ~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~i~ 84 (101)
+........++++.|++++++|++||+|+++||+||+||||+++.+| |+.+++....+++|..++++++++ ....+|+
T Consensus 250 ~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~ 327 (433)
T 3v1v_A 250 RAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVI 327 (433)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHH
Confidence 33333568899999999999999999999999999999999999999 555555556777899999999988 4556789
Q ss_pred HHHHHHHHHhcccccCC
Q 041900 85 RASSAVNRLMNDIMSHK 101 (101)
Q Consensus 85 ~~~~~i~RL~nDi~s~~ 101 (101)
++++.|+||+|||.||+
T Consensus 328 ~~~~~i~rL~NDI~Sy~ 344 (433)
T 3v1v_A 328 ALAGNATTIVNDLYSYT 344 (433)
T ss_dssp HHHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHhchHHHHH
Confidence 99999999999999974
No 14
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=99.81 E-value=1.1e-20 Score=138.86 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcHHHHHHHHHHH
Q 041900 13 HYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSVRASSAVNR 92 (101)
Q Consensus 13 ~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~i~~~~~~i~R 92 (101)
.+.++.|+.++ +|++|++|+.+|++||++|||+++.+|+|+++++..++++||..+|+++++ +.|+|+++++.++|
T Consensus 141 ~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~ 216 (320)
T 3bny_A 141 EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLS 216 (320)
T ss_dssp HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHH
Confidence 35566677777 599999999999999999999999999999999999999999999999998 47999999999999
Q ss_pred HhcccccCC
Q 041900 93 LMNDIMSHK 101 (101)
Q Consensus 93 L~nDi~s~~ 101 (101)
|+|||.||+
T Consensus 217 L~NDl~S~~ 225 (320)
T 3bny_A 217 VVNDIYSYE 225 (320)
T ss_dssp HHHHHHHHH
T ss_pred HhcccchhH
Confidence 999999974
No 15
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=98.86 E-value=4.9e-10 Score=91.08 Aligned_cols=75 Identities=8% Similarity=0.027 Sum_probs=51.9
Q ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhhhccCCcHHH
Q 041900 5 SQGKLYRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFEWLFSNPRSV 84 (101)
Q Consensus 5 ~~~~~~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~w~~~~p~i~ 84 (101)
.||+ ++++|++++|.+++++|++|++ + +| |. .+..++.+++ |..+++ ++.. ..+.+++
T Consensus 580 ~qg~-~v~~~l~~~W~~~l~s~~~Ea~-~--------~E----Ae--llv~~I~l~s----G~~l~e-~l~~-~ey~~L~ 637 (727)
T 3pya_A 580 SHGR-DVNNLLYLSWGDWMEKWKLYGD-E--------GE----GE--LMVKMIILMK----NNDLTN-FFTH-THFVRLA 637 (727)
T ss_dssp HHCC-CCHHHHHHHHHHHHHHHHHHSS-C--------CH----HH--HHHHHHHHHS----SSCGGG-GGSS-HHHHHHH
T ss_pred HcCC-chHHHHHHHHHHHHHHHHHhcc-c--------cc----ee--eeeeeeecCC----CcchHh-hccC-hhHHHHH
Confidence 4455 9999999999999999999998 2 44 22 3333333333 777777 6665 5666699
Q ss_pred HHHHHHHHHhcccccCC
Q 041900 85 RASSAVNRLMNDIMSHK 101 (101)
Q Consensus 85 ~~~~~i~RL~nDi~s~~ 101 (101)
++++.||||+||+++|+
T Consensus 638 ~ltn~icrllndl~~~~ 654 (727)
T 3pya_A 638 EIINRICLPRQYLKARR 654 (727)
T ss_dssp HHHHHHSCCCC------
T ss_pred HHHHHHhHHHhHHHHHH
Confidence 99999999999999985
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=95.38 E-value=0.015 Score=43.84 Aligned_cols=83 Identities=12% Similarity=0.077 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhh---hccCCcHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFE---WLFSNPRSVRA 86 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~---w~~~~p~i~~~ 86 (101)
.....+.+.|.+.+.+...|+. +.+-.|+.++|....+.++|..-.... +. .|+..+. .+..+...+++
T Consensus 145 ~~~~rf~~s~~~~~~a~~~Ea~--n~~~~p~~~~Y~~~rR~~sG~~E~~~~-~~-----~P~~~~~e~~~~~~~~~~i~a 216 (374)
T 1yyq_A 145 FCSLNLIRSTLDFFEGCWIEQY--NFGGFPGSHDYPQFLRRMNGLGHCVGA-SL-----WPKEQFNERSLFLEITSAIAQ 216 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT--CCCCCTTCTTHHHHHHHHHHCHHHHHH-TT-----CCTTTCCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--ccCCCCCHHHHHHHHHhhccHHHHHHH-hh-----ccccccchhhcchhHHHHHHH
Confidence 3455677888999999999986 367789999999988888887533322 21 3333331 11223446667
Q ss_pred HHHHHHHhcccccC
Q 041900 87 SSAVNRLMNDIMSH 100 (101)
Q Consensus 87 ~~~i~RL~nDi~s~ 100 (101)
...++=++|||.||
T Consensus 217 m~~~i~~~NDIlSf 230 (374)
T 1yyq_A 217 MENWMVWVNDLMSF 230 (374)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhcc
Confidence 77788899999886
No 17
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=91.10 E-value=0.74 Score=34.45 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
..+..+-+++.+++.+-..+..|..+. ||.++|++.-.--+|.-...++ .+| ++. .+++..+-+ -.+-+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~-~lga~lag-a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAG-YLGAMHAG-AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHH-HHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 346677788899999999999997655 9999999986666655433222 222 111 344444443 3477888
Q ss_pred HHHHHHhcccc
Q 041900 88 SAVNRLMNDIM 98 (101)
Q Consensus 88 ~~i~RL~nDi~ 98 (101)
++..-+.||+.
T Consensus 233 G~aFQI~DDil 243 (360)
T 3lmd_A 233 GMIFQIVDDII 243 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888899874
No 18
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=88.93 E-value=3.9 Score=29.60 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh-cCCCcchhhhhhccCCcHHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG-MGDIVTKESFEWLFSNPRSVRASS 88 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~~~e~~~w~~~~p~i~~~~~ 88 (101)
..+..+.+.+.+++.+-..+..|..+...||.++|+..-.--+|....+++..-. ++. .++ ..-++-+..+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 4466677888999999999999987667899999999877666644322222111 121 121 1245778888
Q ss_pred HHHHHhcccc
Q 041900 89 AVNRLMNDIM 98 (101)
Q Consensus 89 ~i~RL~nDi~ 98 (101)
+..-+.||+-
T Consensus 183 ~aFQi~DD~l 192 (301)
T 2q80_A 183 LFFQIRDDYA 192 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 19
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=88.81 E-value=2.8 Score=31.14 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhc-CCCcchhhhhhccCCcHHHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGM-GDIVTKESFEWLFSNPRSVRASSA 89 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~~~~e~~~w~~~~p~i~~~~~~ 89 (101)
.+..+-++..+++.+-+.+..|..+ ..||.++|+..-.--+|.....+ +.+|. --..+++..+-+ -.+-+..++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLGGADERTADTL---EKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 4566778889999999999999753 47899999998666666553322 22221 011344444443 347778888
Q ss_pred HHHHhcccc
Q 041900 90 VNRLMNDIM 98 (101)
Q Consensus 90 i~RL~nDi~ 98 (101)
..-+.||+.
T Consensus 219 aFQi~DD~l 227 (352)
T 3nf2_A 219 AFQAVDDLL 227 (352)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888874
No 20
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=87.24 E-value=4.3 Score=29.81 Aligned_cols=83 Identities=12% Similarity=0.179 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--cccChHHHhhhhhhhcchhhHHHHHHHh-cCCCcchhhhhhccCCcHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQN--YVPTVDEYMAVALVTSACPILSTISFVG-MGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~--~vPt~eEYl~~~~~S~g~~~~~~~~~~~-~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
.+..+-+...+++.+-..+..|..+. ..||.++|+..-.--+|....+++..-. ++. .+++ . ...-.+-+..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-H---HHHHHHHHHH
Confidence 56667778899999999999998755 5789999999876666644322221111 111 1111 1 2234578889
Q ss_pred HHHHHHhcccc
Q 041900 88 SAVNRLMNDIM 98 (101)
Q Consensus 88 ~~i~RL~nDi~ 98 (101)
++..-+.||+.
T Consensus 207 G~aFQi~DD~l 217 (340)
T 2e8v_A 207 GIIYQIRDDYL 217 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 21
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=86.99 E-value=3 Score=30.70 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
..+..+-++..+++.+-..+..|.. +..||.++|++.-.--+|.-...++ .+| ++. .+++..+-+ -.+-+..
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag-~~~~~~~~l---~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACA-EAAALSVQ-VGEEEVAFA---RLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHH-HHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4567778888999999999999964 3468999999987766665533222 222 121 344444443 4477888
Q ss_pred HHHHHHhcccccC
Q 041900 88 SAVNRLMNDIMSH 100 (101)
Q Consensus 88 ~~i~RL~nDi~s~ 100 (101)
++..-+.||+..+
T Consensus 207 G~aFQi~DD~ld~ 219 (334)
T 3rmg_A 207 GICFQIKDDIFDY 219 (334)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccC
Confidence 8889999998653
No 22
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=86.46 E-value=5.2 Score=29.14 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
..+..+-++..+++.+-..+..|..+ ..||.++|++.-.--+|.-...++ .+| ++. .+++..+-+ -++-+..
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag-~~~~~~~~l---~~~g~~l 203 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASC-HLGALSSQ-LDEQSTYHI---KQFGHCI 203 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 34666777889999999999999753 368999999987666665533222 222 222 344444443 4477888
Q ss_pred HHHHHHhcccc
Q 041900 88 SAVNRLMNDIM 98 (101)
Q Consensus 88 ~~i~RL~nDi~ 98 (101)
++..-+.||+.
T Consensus 204 G~afQi~DD~l 214 (325)
T 3aqb_B 204 GMSYQIIDDIL 214 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888874
No 23
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=86.21 E-value=3.6 Score=30.56 Aligned_cols=84 Identities=12% Similarity=0.112 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------CCc-ccChHHHhhhhhhhcchhhHHHHHHHhc-CCCcchhhhhhcc
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCH----------QNY-VPTVDEYMAVALVTSACPILSTISFVGM-GDIVTKESFEWLF 78 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~----------~~~-vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~~~~e~~~w~~ 78 (101)
.+..+-++..+++.+-..+..|.. .+. .||.++|++.-.--+|.-...+ +.+|. --..+++..+-+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAA-AKWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcCCCHHHHHHH-
Confidence 466777888999999999999972 233 6799999998666666543322 22221 011344444433
Q ss_pred CCcHHHHHHHHHHHHhcccc
Q 041900 79 SNPRSVRASSAVNRLMNDIM 98 (101)
Q Consensus 79 ~~p~i~~~~~~i~RL~nDi~ 98 (101)
-.+-+..++..-+.||+-
T Consensus 211 --~~~g~~lG~aFQI~DD~l 228 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVL 228 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHH
Confidence 346778888888888874
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=85.52 E-value=6.3 Score=29.04 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhc-CCCcchhhhhhccCCcHHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGM-GDIVTKESFEWLFSNPRSVRASS 88 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~~~~e~~~w~~~~p~i~~~~~ 88 (101)
..+..+-++..+++.+-..+..|.. +..||.++|++.-.--+|.-.-.+ +.+|. --..+++..+-+ -.+-+..+
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag~~~~~~~~l---~~~g~~lG 213 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIGGAPEDQVQAL---FDYGDALG 213 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHH
Confidence 4566777888899999999999964 456899999998666666543222 22221 011344444443 34778888
Q ss_pred HHHHHhccccc
Q 041900 89 AVNRLMNDIMS 99 (101)
Q Consensus 89 ~i~RL~nDi~s 99 (101)
+..-+.||+..
T Consensus 214 ~aFQI~DD~ld 224 (341)
T 3mzv_A 214 IAFQIVDDLLD 224 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88889998754
No 25
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=85.08 E-value=3.1 Score=30.12 Aligned_cols=82 Identities=13% Similarity=0.150 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
..+..+-++..+++.+-..+..|..+ .||.++|++.-.--+|.-... ++.+| ++. .+++..+-+ -.+-+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~-a~~~ga~lag-~~~~~~~~l---~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAI-SASIGAYTGG-AEEELAERF---SHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHH-HHHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHH-HHHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 34556667778899999999988654 489999998866666554322 22222 122 344444443 3467788
Q ss_pred HHHHHHhcccc
Q 041900 88 SAVNRLMNDIM 98 (101)
Q Consensus 88 ~~i~RL~nDi~ 98 (101)
++..-+.||+.
T Consensus 200 GlaFQI~DDil 210 (295)
T 3ipi_A 200 GTAYQIVDDIL 210 (295)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888999874
No 26
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=84.85 E-value=5.7 Score=28.99 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKW-CHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW-~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
.+..+-++..+++.+-..+..| ..+...||.++|++.-.--+|...+...+.+| ++. .+++.. + -++-+..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag-~~~~~~--l---~~~g~~l 204 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG-KTPPAA--Y---EEGGLRL 204 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-CCCCHH--H---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC-CCHHHH--H---HHHHHHH
Confidence 4666777889999999999999 65435789999998866555544111111221 122 222222 2 4477888
Q ss_pred HHHHHHhccccc
Q 041900 88 SAVNRLMNDIMS 99 (101)
Q Consensus 88 ~~i~RL~nDi~s 99 (101)
++..-+.||+..
T Consensus 205 G~aFQi~DD~ld 216 (330)
T 1wmw_A 205 GTAFQIVDDVLN 216 (330)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHccCc
Confidence 899999998753
No 27
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=84.84 E-value=6.1 Score=29.19 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhc-CCCcchhhhhhccCCcHHHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGM-GDIVTKESFEWLFSNPRSVRASS 88 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~~~~e~~~w~~~~p~i~~~~~ 88 (101)
..+..+-++..+++.+-+.+..|.. +..||.++|+..-.--+|.-.. .++.+|. --..+++..+-+ -.+-+..+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~-~~~~~ga~lag~~~~~~~~l---~~~g~~lG 225 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFA-AASEAGAVSAGVDVAKSEAL---RDYGLNLG 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTTCCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHH-HHHHHHHHHcCCCHHHHHHH---HHHHHHHH
Confidence 4566777888899999999999864 4468999999987666665432 2222221 111344444443 34778889
Q ss_pred HHHHHhcccccC
Q 041900 89 AVNRLMNDIMSH 100 (101)
Q Consensus 89 ~i~RL~nDi~s~ 100 (101)
+..-+.||+..+
T Consensus 226 ~aFQi~DD~lD~ 237 (345)
T 3oyr_A 226 LAFQLADDALDY 237 (345)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhc
Confidence 999999998654
No 28
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=84.44 E-value=5.2 Score=28.90 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh---cCCCcchhhhhhccCCcHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG---MGDIVTKESFEWLFSNPRSVRA 86 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~---~g~~~~~e~~~w~~~~p~i~~~ 86 (101)
..+..+-++...++.+-..+..|..+. ||.++|++.-.--+|.-.-.+ +.+| -|. +++.+. .+-+.
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag~--~~~~l~------~~g~~ 195 (299)
T 1v4e_A 127 KLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLA-LQLPALLEGE--LGEDLY------NLGVT 195 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHH-HHHHHHHHTC--CCHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHH-HHHHHHHcCC--CHHHHH------HHHHH
Confidence 346667778899999999999997655 999999988766555542222 2221 122 113332 36678
Q ss_pred HHHHHHHhccccc
Q 041900 87 SSAVNRLMNDIMS 99 (101)
Q Consensus 87 ~~~i~RL~nDi~s 99 (101)
.++..-+.||+-.
T Consensus 196 lG~aFQi~DD~lD 208 (299)
T 1v4e_A 196 IGTIYQMFDDIMD 208 (299)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888743
No 29
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=83.86 E-value=6.1 Score=28.92 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhc-CCCcchhhhhhccCCcHHHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGM-GDIVTKESFEWLFSNPRSVRASSA 89 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~-g~~~~~e~~~w~~~~p~i~~~~~~ 89 (101)
.+..+-++...++.+-..+..|..+. ..|.++|++.-.--+|.-...++ .+|. --..+++..+-+ -++-...++
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~ 212 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASA-KVGGIIGTDNEEYIKAL---SSWGRNVGI 212 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 46667778899999999999997543 45999999987666655433322 2221 011344444443 447788888
Q ss_pred HHHHhcccc
Q 041900 90 VNRLMNDIM 98 (101)
Q Consensus 90 i~RL~nDi~ 98 (101)
..-+.||+.
T Consensus 213 aFQI~DD~l 221 (342)
T 1wy0_A 213 AFQIWDDVL 221 (342)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888999874
No 30
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=82.89 E-value=6.9 Score=28.14 Aligned_cols=80 Identities=4% Similarity=-0.062 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASS 88 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~ 88 (101)
.+..+-++...++.+-..+..|..+...||.++|++.-.--+|.-.-.+ +.+| ++. .+++.+ -++-+..+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag-~~~~~l------~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFC-FSAPFILXG-XDHTXM------XLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCCHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CChhHH------HHHHHHHH
Confidence 4666667779999999999999865447899999998666555442222 2221 111 233322 34677888
Q ss_pred HHHHHhcccc
Q 041900 89 AVNRLMNDIM 98 (101)
Q Consensus 89 ~i~RL~nDi~ 98 (101)
+..-+.||+.
T Consensus 207 ~aFQI~DD~l 216 (284)
T 2ftz_A 207 VAFQIYDDLX 216 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888888874
No 31
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=82.82 E-value=7.1 Score=28.23 Aligned_cols=73 Identities=12% Similarity=0.121 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|...+..||.++|+..-.--+|.-...+ +.+| ++. .+++.+ -++-+..++..-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga~lag-~~~~~l------~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGAILAG-ADRGPL------TAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCCHHH------HHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHHHHcC-CCHHHH------HHHHHHHHHHHHHHHHH
Confidence 5688899999999865678999999998655555432221 1221 122 233322 34778889999999998
Q ss_pred ccC
Q 041900 98 MSH 100 (101)
Q Consensus 98 ~s~ 100 (101)
..+
T Consensus 219 lD~ 221 (297)
T 3m0g_A 219 LDV 221 (297)
T ss_dssp C--
T ss_pred Hhc
Confidence 653
No 32
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=82.60 E-value=7.8 Score=28.42 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHhc--CCCcchhhhhhccCCcHHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVGM--GDIVTKESFEWLFSNPRSVRASS 88 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~~--g~~~~~e~~~w~~~~p~i~~~~~ 88 (101)
.+..+-++..+++.+-+.+..|.. +..||.++|++.-.--+|.-. ..++.+|. +. .+++..+-+ -.+-+..+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELF-ALSCYQGAQLAG-APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHH-HHHHHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHH-HHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 456667788899999998888864 457899999987655555442 22222221 22 344444443 34667888
Q ss_pred HHHHHhccccc
Q 041900 89 AVNRLMNDIMS 99 (101)
Q Consensus 89 ~i~RL~nDi~s 99 (101)
+..-+.||+..
T Consensus 218 ~aFQi~DD~ld 228 (334)
T 3pko_A 218 CAYQMLDDILD 228 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888743
No 33
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=82.44 E-value=8.7 Score=28.53 Aligned_cols=85 Identities=13% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc----ccChHHHhhhhhhhcchh-h-HHHHHHHhcCCCcchhhhhhccCCcHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNY----VPTVDEYMAVALVTSACP-I-LSTISFVGMGDIVTKESFEWLFSNPRSV 84 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~----vPt~eEYl~~~~~S~g~~-~-~~~~~~~~~g~~~~~e~~~w~~~~p~i~ 84 (101)
.+..+.+....++.+-+.+..|..++. .+|+++|+..-.--+|.. . +.+.+-..++...+++..+-+ -++-
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l---~~~g 246 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENA---KAIL 246 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHH---HHHH
Confidence 466667778889999999999976543 689999999876655554 1 111111112222344444443 3477
Q ss_pred HHHHHHHHHhcccc
Q 041900 85 RASSAVNRLMNDIM 98 (101)
Q Consensus 85 ~~~~~i~RL~nDi~ 98 (101)
+..++..-+.||+-
T Consensus 247 ~~lG~aFQI~DD~L 260 (367)
T 1uby_A 247 LEMGEYFQIQDDYL 260 (367)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888874
No 34
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=82.13 E-value=8.6 Score=28.64 Aligned_cols=85 Identities=9% Similarity=-0.009 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc----ccChHHHhhhhhhhcchh-hH-HHHHHHhcCCCcchhhhhhccCCcHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNY----VPTVDEYMAVALVTSACP-IL-STISFVGMGDIVTKESFEWLFSNPRSV 84 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~----vPt~eEYl~~~~~S~g~~-~~-~~~~~~~~g~~~~~e~~~w~~~~p~i~ 84 (101)
.+..+.+....++.+-+.+..|...+. .||.++|+..-.--+|.. .- .+..-..++...+++..+-+ -++-
T Consensus 177 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l---~~~g 253 (374)
T 2qis_A 177 LIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANA---KKIL 253 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHH---HHHH
Confidence 466677788899999999999976544 489999999876666554 21 11111112332445555443 4477
Q ss_pred HHHHHHHHHhcccc
Q 041900 85 RASSAVNRLMNDIM 98 (101)
Q Consensus 85 ~~~~~i~RL~nDi~ 98 (101)
+..++..-+.||+-
T Consensus 254 ~~lG~aFQI~DDiL 267 (374)
T 2qis_A 254 LEMGEFFQIQDDYL 267 (374)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888874
No 35
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=79.16 E-value=14 Score=26.94 Aligned_cols=81 Identities=7% Similarity=-0.009 Sum_probs=53.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh---cCCCcchhhhhhccCCcHHHHH
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG---MGDIVTKESFEWLFSNPRSVRA 86 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~---~g~~~~~e~~~w~~~~p~i~~~ 86 (101)
..+..+-++..+++.+-+.+..|.. +..||.++|++.-.--+|.-...+ +.+| -|.. .+.+ -.+-+.
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag~~--~~~l------~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMAILLNKD--AKIY------ADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTSC--HHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcCCC--HHHH------HHHHHH
Confidence 3456667788899999999999975 357899999987655555442222 2222 1222 2333 346778
Q ss_pred HHHHHHHhcccccC
Q 041900 87 SSAVNRLMNDIMSH 100 (101)
Q Consensus 87 ~~~i~RL~nDi~s~ 100 (101)
.++..-+.||+..+
T Consensus 192 lG~aFQI~DD~ld~ 205 (315)
T 3tc1_A 192 FGMAFQIIDDLLDI 205 (315)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc
Confidence 88888899987543
No 36
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=78.03 E-value=8.6 Score=28.36 Aligned_cols=85 Identities=8% Similarity=0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----------cCCc----ccChHHHhhhhhhhcchh-h-HHHHHHHhcCCCcchhh
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWC-----------HQNY----VPTVDEYMAVALVTSACP-I-LSTISFVGMGDIVTKES 73 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~-----------~~~~----vPt~eEYl~~~~~S~g~~-~-~~~~~~~~~g~~~~~e~ 73 (101)
.+..+-++..+++.+-..+..|. ..+. .||.++|+..-.--+|.. . +.+..-..++...+++.
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~ 231 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVE 231 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHH
Confidence 46667778899999999999997 3223 589999999876666554 2 21111111222233333
Q ss_pred hhhccCCcHHHHHHHHHHHHhcccc
Q 041900 74 FEWLFSNPRSVRASSAVNRLMNDIM 98 (101)
Q Consensus 74 ~~w~~~~p~i~~~~~~i~RL~nDi~ 98 (101)
.+-+ -++-+..++..-+.||+-
T Consensus 232 ~~~l---~~~g~~lG~aFQi~DD~l 253 (362)
T 1yhl_A 232 MNLV---ERVAHLIGEYFQVQDDVM 253 (362)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHH
Confidence 4333 347778888888888874
No 37
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=76.08 E-value=8.6 Score=28.53 Aligned_cols=84 Identities=7% Similarity=0.033 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccc-ChHHHhhhhhhhcchhh---HHHHHHHhcCCCcchhhhhhccCCcHHHHHH
Q 041900 12 LHYAKEAMKNLVKHYLFEAKWCHQNYVP-TVDEYMAVALVTSACPI---LSTISFVGMGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 12 ~~~~k~~~~~l~~~yl~EakW~~~~~vP-t~eEYl~~~~~S~g~~~---~~~~~~~~~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
+..+-++...++.+-..+..|.+.+..| |.++|++.-.-=+|+.. .+..+.+.-|...+++..+-+ -.+.+..
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l---~~~g~~l 246 (368)
T 2q58_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLI---EAILYKL 246 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTH---HHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHH---HHHHHHH
Confidence 3445566677888888888898766554 78899987544444321 122223333434455444443 3477788
Q ss_pred HHHHHHhcccc
Q 041900 88 SAVNRLMNDIM 98 (101)
Q Consensus 88 ~~i~RL~nDi~ 98 (101)
++..-+.||+-
T Consensus 247 G~aFQI~DDiL 257 (368)
T 2q58_A 247 GEFYQVHNDVS 257 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888874
No 38
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=75.87 E-value=8.7 Score=27.73 Aligned_cols=72 Identities=8% Similarity=0.097 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|..+ .||.++|++.-.--+|.-...+ +.+| ++. .+++..+-+ -++-+..++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFA-VMSAADIAN-VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5678888888888653 7899999998766666542222 2222 111 445555443 34677888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
-
T Consensus 221 l 221 (301)
T 1rtr_A 221 L 221 (301)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=73.35 E-value=10 Score=27.77 Aligned_cols=83 Identities=18% Similarity=0.106 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHH-HhcCCCcchhhhhhccCCcHHHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISF-VGMGDIVTKESFEWLFSNPRSVRASSA 89 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~-~~~g~~~~~e~~~w~~~~p~i~~~~~~ 89 (101)
.+..+-++..+++.+-..+..|.. +..||.++|++.-.--+|.-...++.. ..++. .+++..+-+ -++-+..++
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG~ 228 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSST-EQRYSMDYYMQKTYYKTASLISNSCKAVAVLTG-QTAEVAVLA---FEYGRNLGL 228 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCH-HHHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT-CCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHHH
Confidence 456667778889999988888753 246899999998555555443222211 11221 344444433 346678888
Q ss_pred HHHHhcccc
Q 041900 90 VNRLMNDIM 98 (101)
Q Consensus 90 i~RL~nDi~ 98 (101)
..-+.||+-
T Consensus 229 aFQi~DD~l 237 (348)
T 3apz_A 229 AFQLIDDIL 237 (348)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888874
No 40
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=72.19 E-value=23 Score=26.43 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHh
Q 041900 17 EAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLM 94 (101)
Q Consensus 17 ~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~ 94 (101)
....+++.+-+.+..|..+. .||.++|+..-.--+|...+...+.+| ++. .+++..+-+ -.+-+..++..-+.
T Consensus 182 ~~~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag-a~~~~~~~l---~~~G~~lG~AFQI~ 256 (380)
T 3lk5_A 182 GMRTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG-GSPQLIDAL---LHYGHDIGIAFQLR 256 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHH
Confidence 33357888999999997644 679999999866666554221111221 111 334444443 34778888888888
Q ss_pred cccc
Q 041900 95 NDIM 98 (101)
Q Consensus 95 nDi~ 98 (101)
||+-
T Consensus 257 DDiL 260 (380)
T 3lk5_A 257 DDLL 260 (380)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 41
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=71.12 E-value=13 Score=27.33 Aligned_cols=72 Identities=8% Similarity=0.084 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|..+ .+|.++|+..-.--+|.-.-.+ +.+| ++. .+++..+-+ -++-+..++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a-~~~Ga~lag-a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFA-CEAGAIIAG-SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHhC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6688888999999765 7899999998766666542222 2222 111 344545443 44777888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
-
T Consensus 265 L 265 (335)
T 2h8o_A 265 L 265 (335)
T ss_dssp H
T ss_pred H
Confidence 4
No 42
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=68.11 E-value=16 Score=26.16 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--c-CCCcchhhhhhccCCcHHHHHHHHHHHHhcc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--M-GDIVTKESFEWLFSNPRSVRASSAVNRLMND 96 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~-g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nD 96 (101)
..++.+-..+..|..+ .+|.++|+..-.--+|.-.- ..+.+| + + ..+++..+-+ -++-+..++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~-~~~~~ga~l~a-g~~~~~~~~l---~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIR-AAVRLGALSAG-DKGRRALPVL---DKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTT-HHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHhC-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4678888888888654 78999999987555554322 222222 2 1 1344444443 4467788888888888
Q ss_pred cc
Q 041900 97 IM 98 (101)
Q Consensus 97 i~ 98 (101)
+-
T Consensus 225 ~l 226 (299)
T 1rqj_A 225 IL 226 (299)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 43
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=67.39 E-value=29 Score=25.84 Aligned_cols=83 Identities=7% Similarity=0.101 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCh-HHHhhhhhhhcchh-h-HHH-HHHHhcCCCcchhh--hhhccCCcHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTV-DEYMAVALVTSACP-I-LST-ISFVGMGDIVTKES--FEWLFSNPRSV 84 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~-eEYl~~~~~S~g~~-~-~~~-~~~~~~g~~~~~e~--~~w~~~~p~i~ 84 (101)
.+..+-++..+++.+-+.+..|...+..+.+ ++|+..-.--+|.. . +.+ ...+.-| .+++. .+-+ -++-
T Consensus 169 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag--~~~~~~~~~~l---~~~g 243 (368)
T 2her_A 169 IQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE--IQVSSAQLNLI---EAIL 243 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC--CCCCCSSTTTH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcC--CChhHHHHHHH---HHHH
Confidence 4566777888999999999999776634445 99998866555553 1 111 1122223 22332 3322 3477
Q ss_pred HHHHHHHHHhcccc
Q 041900 85 RASSAVNRLMNDIM 98 (101)
Q Consensus 85 ~~~~~i~RL~nDi~ 98 (101)
+..++..-+.||+-
T Consensus 244 ~~lG~aFQI~DD~L 257 (368)
T 2her_A 244 YKLGEFYQVHNDVS 257 (368)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888874
No 44
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=66.20 E-value=19 Score=26.81 Aligned_cols=84 Identities=7% Similarity=0.058 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-----------------------cccChHHHhhhhhhhcchh---hHHHHHHHhc
Q 041900 12 LHYAKEAMKNLVKHYLFEAKWCHQN-----------------------YVPTVDEYMAVALVTSACP---ILSTISFVGM 65 (101)
Q Consensus 12 ~~~~k~~~~~l~~~yl~EakW~~~~-----------------------~vPt~eEYl~~~~~S~g~~---~~~~~~~~~~ 65 (101)
+.-+.++..+++.+-..+..|..+. ..+|+++|++.-.-=+|.- ..+....+.-
T Consensus 180 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~a 259 (395)
T 3mav_A 180 IATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLA 259 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 4555566677888888888775432 3469999998865555433 1122222323
Q ss_pred CCCcchhhhhhccCCcHHHHHHHHHHHHhcccc
Q 041900 66 GDIVTKESFEWLFSNPRSVRASSAVNRLMNDIM 98 (101)
Q Consensus 66 g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi~ 98 (101)
|-..+++..+-+ -++-...++..-+.||+-
T Consensus 260 g~~~d~~~~~~l---~~~g~~lG~aFQI~DDiL 289 (395)
T 3mav_A 260 GIAVDNLIYKKI---EDISMLMGEYFQIHDDYL 289 (395)
T ss_dssp TCCTTCTHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 333344444443 336778888888888874
No 45
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=65.58 E-value=20 Score=25.79 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhcc
Q 041900 19 MKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMND 96 (101)
Q Consensus 19 ~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nD 96 (101)
...++.+-..+..|.. ..||.++|...-.--+|.-...+ +.+| ++ ..+++..+-+ -++-+..++..-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQI---YKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 5567788888888853 57899999998654444432222 2222 12 1344444433 4477888888888898
Q ss_pred cc
Q 041900 97 IM 98 (101)
Q Consensus 97 i~ 98 (101)
+.
T Consensus 217 iL 218 (291)
T 3npk_A 217 II 218 (291)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 46
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=65.15 E-value=31 Score=24.90 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhcccc
Q 041900 21 NLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIM 98 (101)
Q Consensus 21 ~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi~ 98 (101)
.++.+-..+..|..+ .||.++|+..-.--+|.-.. .++.+| ++...+++..+-+ -++-+..++..-+.||+-
T Consensus 153 ~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~-~~~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIE-ASVILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp THHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 377888888888654 48999999985544443322 222222 2222244444443 346778888888888874
No 47
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=64.60 E-value=36 Score=24.83 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|... .||.++|+..-.--+|.-.. .++.+| ++...+++..+-+ -++-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIR-ASVRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4578888888888653 78999999985545544322 222222 2332455555443 34677888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
-
T Consensus 232 L 232 (324)
T 3ts7_A 232 L 232 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 48
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=64.54 E-value=26 Score=25.27 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|.. ..||.++|+..-.--+|.-.- ..+.+| ++. .+++..+-+ -++-+..++..-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~-~~~~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIE-FALIAGGVLAN-QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 456778888888854 378999999985444444322 222222 121 344444443 34777888888888987
Q ss_pred cc
Q 041900 98 MS 99 (101)
Q Consensus 98 ~s 99 (101)
..
T Consensus 229 lD 230 (302)
T 3p8l_A 229 LD 230 (302)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 49
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=64.28 E-value=15 Score=26.06 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|..+ .||.++|+..-.--+|.-.. +++.+| ++. .+++..+-+ -++-+..++..-+.||+
T Consensus 149 ~~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~-~a~~lGailag-a~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 149 EGMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHA-CGAACGAILGG-AAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TTHHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 3457777777777543 79999999875444444322 222222 122 344444443 44777888888888886
No 50
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=62.77 E-value=32 Score=24.97 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|.. ..||.++|+..-.--+|.-.. .++.+| ++. .+++..+-+ -++-+..++..-+.||+
T Consensus 155 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~-~a~~~ga~lag-a~~~~~~~l---~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 155 SGMVAGQAKDIQSEH--VNLPLSQLRVLHKEKTGALLH-YAVQAGLILGQ-APEAQWPAY---LQFADAFGLAFQIYDDI 227 (309)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHH-HHHHHHHHHTT-CCGGGHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhccHHHHH-HHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 457778888888854 368999999985444444322 222222 222 344444433 34777888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
.
T Consensus 228 L 228 (309)
T 3pde_A 228 L 228 (309)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=62.42 E-value=19 Score=26.09 Aligned_cols=73 Identities=14% Similarity=0.235 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhh-hhccCCcHHHHHHHHHHHHhc
Q 041900 19 MKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESF-EWLFSNPRSVRASSAVNRLMN 95 (101)
Q Consensus 19 ~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~-~w~~~~p~i~~~~~~i~RL~n 95 (101)
...++.+-..+..|. +..||.++|+..-.--+|.-...+ +.+| ++. .+++.. +-+ -++-+..++..-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag-a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG-IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC-CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 356778888888886 567899999988655555432222 1222 111 333333 333 347778888888889
Q ss_pred ccc
Q 041900 96 DIM 98 (101)
Q Consensus 96 Di~ 98 (101)
|+-
T Consensus 231 DiL 233 (311)
T 3llw_A 231 DII 233 (311)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 52
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=62.13 E-value=37 Score=24.62 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchh-hHHHHHHHhcCCC-cchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACP-ILSTISFVGMGDI-VTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~-~~~~~~~~~~g~~-~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|..+ ..||.++|+..-.--+|.- ...+.. ..++.. .+++..+-+ -++-+..++..-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567888888888643 3789999999865444433 333332 233332 555555544 34777888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
-
T Consensus 233 l 233 (313)
T 3lom_A 233 L 233 (313)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=60.20 E-value=33 Score=24.71 Aligned_cols=73 Identities=11% Similarity=0.100 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|. +..||.++|+..-.--+|.-.. .++.+| ++...+++..+-+ -++-+..++..-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~-~~~~~ga~lag~~~~~~~~~l---~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMR-CAIRLGALAAGEKGRAMLPHL---DRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHH-HHHHHHHHTTTHHHHTTHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHH-HHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 46788888888886 4578999999986544444322 222222 2222334444333 34777888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
.
T Consensus 232 l 232 (302)
T 3p8r_A 232 L 232 (302)
T ss_dssp H
T ss_pred H
Confidence 4
No 54
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=55.04 E-value=40 Score=24.53 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhH-HHHHHHhcCCCcchhhhhhccCCcHHHHHHHHHHHHhccccc
Q 041900 21 NLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPIL-STISFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIMS 99 (101)
Q Consensus 21 ~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~-~~~~~~~~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi~s 99 (101)
.++.+-..+..|.. ..||.++|+..-.--+|.-.- .+..-..++...+++..+-+ -++-+..++..-+.||+-.
T Consensus 152 ~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiLD 226 (317)
T 4f62_A 152 GMITGQMIDLSSEN--KNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDIID 226 (317)
T ss_dssp THHHHHHHHHHTSS--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhccC--CCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 47788888888863 458999999986544444322 22111112332445444443 3477788888889998754
No 55
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=50.42 E-value=63 Score=23.52 Aligned_cols=73 Identities=10% Similarity=0.040 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHHHHHHHhccc
Q 041900 20 KNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASSAVNRLMNDI 97 (101)
Q Consensus 20 ~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi 97 (101)
..++.+-..+..|..+ ..||.++|+..-.--+|.-.. .++.+| ++ ..+++..+-+ -++-+..++..-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~-~a~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIK-ASIMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHH-HHHHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHH-HHHHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3467788888888643 368999999985444443322 222222 12 1344444443 34677888888888887
Q ss_pred c
Q 041900 98 M 98 (101)
Q Consensus 98 ~ 98 (101)
-
T Consensus 254 L 254 (324)
T 3uca_A 254 L 254 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 56
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=48.44 E-value=83 Score=23.51 Aligned_cols=84 Identities=7% Similarity=0.123 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-H----hc--------------CCc----ccChHHHhhhhhhhcchh---hHHHHHHHh
Q 041900 11 RLHYAKEAMKNLVKHYLFEAK-W----CH--------------QNY----VPTVDEYMAVALVTSACP---ILSTISFVG 64 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~Eak-W----~~--------------~~~----vPt~eEYl~~~~~S~g~~---~~~~~~~~~ 64 (101)
.+..+.++...++.+-..+.. | ++ ++. .||.++|+..-.--+|.. ..+....+.
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~l 258 (395)
T 2ihi_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 466677778889999999984 4 11 333 689999998866666653 112222222
Q ss_pred cCCCcchhh--hhhccCCcHHHHHHHHHHHHhccccc
Q 041900 65 MGDIVTKES--FEWLFSNPRSVRASSAVNRLMNDIMS 99 (101)
Q Consensus 65 ~g~~~~~e~--~~w~~~~p~i~~~~~~i~RL~nDi~s 99 (101)
-| .+++. .+-+ -.+.+..++..-+.||+-.
T Consensus 259 ag--~~~~~~~~~~l---~~~g~~lG~aFQI~DD~LD 290 (395)
T 2ihi_A 259 AG--IAVDNLIYKKI---EDISMLMGEYFQIHDDYLD 290 (395)
T ss_dssp TT--CCTTCTHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred cC--CChhhHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 23 23332 3332 3477788888889998753
No 57
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=47.57 E-value=11 Score=21.90 Aligned_cols=37 Identities=35% Similarity=0.376 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhc-CCcccChHHHhhhhhhhcchhhH
Q 041900 21 NLVKHYLFEAKWCH-QNYVPTVDEYMAVALVTSACPIL 57 (101)
Q Consensus 21 ~l~~~yl~EakW~~-~~~vPt~eEYl~~~~~S~g~~~~ 57 (101)
+-.+.++++..|.- .-.+|+-+||...+.++.-+..+
T Consensus 10 e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~i 47 (74)
T 1rh5_B 10 EQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISL 47 (74)
T ss_dssp --CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 33444455544443 35599999999999877644433
No 58
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=40.80 E-value=53 Score=19.31 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhH
Q 041900 16 KEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPIL 57 (101)
Q Consensus 16 k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~ 57 (101)
.+..++.++.+.+=. ..-.+|+-+||...+.++.-+..+
T Consensus 22 ~e~~~~f~kd~~rvl---k~~~KPdr~Ef~~iak~t~iG~~i 60 (80)
T 2ww9_B 22 VEAPVEFVREGTQFL---AKCKKPDLKEYTKIVKAVGIGFIA 60 (80)
T ss_dssp CHHHHHHHHHHHHHH---HSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 333444444443322 356799999999999877654433
No 59
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=37.28 E-value=9.4 Score=21.40 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHhc-CCcccChHHHhhhhhhhcchh
Q 041900 24 KHYLFEAKWCH-QNYVPTVDEYMAVALVTSACP 55 (101)
Q Consensus 24 ~~yl~EakW~~-~~~vPt~eEYl~~~~~S~g~~ 55 (101)
+.++++..|.- .-.+|+-+||...+.++.-+.
T Consensus 9 ~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~ 41 (61)
T 3mp7_B 9 RHFWKESRRAFLVTKKPNWATYKRAAKITGLGI 41 (61)
T ss_dssp TTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34444544442 356999999999998775443
No 60
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.71 E-value=16 Score=19.18 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcccccCC
Q 041900 83 SVRASSAVNRLMNDIMSHK 101 (101)
Q Consensus 83 i~~~~~~i~RL~nDi~s~~ 101 (101)
|...-..|.||-|.++||+
T Consensus 33 ianlrdeiarlenevashe 51 (52)
T 3he5_B 33 IANLRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4456778999999998875
No 61
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=34.55 E-value=28 Score=24.88 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCC-cccChHHHhhhhhhhcchhh-HHHHHHHhcCCCcchhhhhhccCCcHHHHHHHHHHHHhcccc
Q 041900 21 NLVKHYLFEAKWCHQN-YVPTVDEYMAVALVTSACPI-LSTISFVGMGDIVTKESFEWLFSNPRSVRASSAVNRLMNDIM 98 (101)
Q Consensus 21 ~l~~~yl~EakW~~~~-~vPt~eEYl~~~~~S~g~~~-~~~~~~~~~g~~~~~e~~~w~~~~p~i~~~~~~i~RL~nDi~ 98 (101)
.++.+-..+..|..++ ..+|.++|+..-.--+|.-. +.+..-..++. .+++..+-+ -++-+..++..-+.||+-
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDiL 236 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG-GSDEEIERL---RKFARCIGLLFQVVDDIL 236 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4667777777775432 46789999988544444332 22211111222 344544443 346778888888888874
No 62
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=32.40 E-value=1.5e+02 Score=21.94 Aligned_cols=84 Identities=10% Similarity=0.022 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-----------C----CcccChHHHhhhhhhhcchh-h-HHH-HHHHhcCCCcchh
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCH-----------Q----NYVPTVDEYMAVALVTSACP-I-LST-ISFVGMGDIVTKE 72 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~-----------~----~~vPt~eEYl~~~~~S~g~~-~-~~~-~~~~~~g~~~~~e 72 (101)
.+..+.+....++.+-..+..|.. . ...+|+++|+..-.--+|.. . +.+ ...+.-|.. +++
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~-~~~ 258 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEAL-PTV 258 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCG-GGS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC-hHH
Confidence 456666777889999999999831 1 13689999998866666653 1 111 111212211 111
Q ss_pred hhhhccCCcHHHHHHHHHHHHhcccc
Q 041900 73 SFEWLFSNPRSVRASSAVNRLMNDIM 98 (101)
Q Consensus 73 ~~~w~~~~p~i~~~~~~i~RL~nDi~ 98 (101)
..+-+ -++-+..++..-+.||+-
T Consensus 259 ~~~~l---~~~g~~lGlaFQI~DDiL 281 (390)
T 3dyh_A 259 DMGVT---EELAMLMGEYFQVQDDVM 281 (390)
T ss_dssp CHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHH
Confidence 12222 336778888888888874
No 63
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=31.98 E-value=38 Score=19.26 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=18.3
Q ss_pred CCcccChHHHhhhhhhhcchhhHH
Q 041900 35 QNYVPTVDEYMAVALVTSACPILS 58 (101)
Q Consensus 35 ~~~vPt~eEYl~~~~~S~g~~~~~ 58 (101)
.-.+|+-+||...+.++.-+..++
T Consensus 24 ~~~KPdr~Ef~~iak~~~iG~~i~ 47 (68)
T 2wwb_B 24 RCTKPDRKEFQKIAMATAIGFAIM 47 (68)
T ss_dssp HCCCCCTHHHHHHHHHSSHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHH
Confidence 356999999999999876554443
No 64
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=30.54 E-value=90 Score=22.21 Aligned_cols=75 Identities=8% Similarity=0.057 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhhhhhhcchhhHHHHHHHh--cCCCcchhhhhhccCCcHHHHHHH
Q 041900 11 RLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAVALVTSACPILSTISFVG--MGDIVTKESFEWLFSNPRSVRASS 88 (101)
Q Consensus 11 ~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~~~~e~~~w~~~~p~i~~~~~ 88 (101)
.+..+-++...++.+-..+..| .++|++.-.--+|.-.-.+ +.+| ++ .+++..+-+ -++-+..+
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a-~~~ga~la--~~~~~~~~l---~~~g~~lG 201 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLS-TVLSAYAS--KHYNTKQQM---LDVGKYLG 201 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHH-HHHHHHHT--TCGGGHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHH-HHHHHHHc--CCHHHHHHH---HHHHHHHH
Confidence 3455556666777777766654 6888887655555442222 2222 23 455555443 34677888
Q ss_pred HHHHHhccccc
Q 041900 89 AVNRLMNDIMS 99 (101)
Q Consensus 89 ~i~RL~nDi~s 99 (101)
+..-+.||+-.
T Consensus 202 ~aFQi~DDilD 212 (289)
T 2azj_A 202 IIYQVIDDFVD 212 (289)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 88888998743
No 65
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=26.60 E-value=26 Score=21.91 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHHHHhccccc
Q 041900 80 NPRSVRASSAVNRLMNDIMS 99 (101)
Q Consensus 80 ~p~i~~~~~~i~RL~nDi~s 99 (101)
.|+|+.++=..||=+||.++
T Consensus 44 ~P~ii~aaLrAcRRvND~al 63 (109)
T 1v54_E 44 EPKIIDAALRACRRLNDFAS 63 (109)
T ss_dssp CHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHHHHHhhhHHH
Confidence 39999999999999999764
No 66
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Coxiella burnetii}
Probab=23.66 E-value=39 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=20.5
Q ss_pred HHhcCCCcchhhhhhccCCcHHHHHH
Q 041900 62 FVGMGDIVTKESFEWLFSNPRSVRAS 87 (101)
Q Consensus 62 ~~~~g~~~~~e~~~w~~~~p~i~~~~ 87 (101)
.+.....+|+++++|+.+.|++..+.
T Consensus 171 ~lla~rLLP~e~l~WLs~~P~il~~L 196 (393)
T 3kq5_A 171 PILVRQLLPDEGFLWLTSDMRVFSDW 196 (393)
T ss_dssp HHHHHHHSCHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHhCCHHHHHHH
Confidence 33345778999999999999987643
No 67
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=22.58 E-value=35 Score=18.61 Aligned_cols=15 Identities=0% Similarity=0.089 Sum_probs=7.1
Q ss_pred cCCcHHHHHHHHHHH
Q 041900 78 FSNPRSVRASSAVNR 92 (101)
Q Consensus 78 ~~~p~i~~~~~~i~R 92 (101)
.++|++......+..
T Consensus 41 ~~dP~v~~~~~~L~~ 55 (62)
T 2lnm_A 41 QNDKEVMDVFNKISQ 55 (62)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHH
Confidence 445555544444443
No 68
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.31 E-value=36 Score=19.04 Aligned_cols=10 Identities=30% Similarity=0.624 Sum_probs=8.1
Q ss_pred ChHHHhhhhh
Q 041900 40 TVDEYMAVAL 49 (101)
Q Consensus 40 t~eEYl~~~~ 49 (101)
|++|||+.-.
T Consensus 11 t~qeylevK~ 20 (63)
T 2w6a_A 11 TLQEYLELKK 20 (63)
T ss_dssp CHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8999998754
No 69
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=21.71 E-value=1.3e+02 Score=21.01 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=17.7
Q ss_pred HhcCCc-ccChHHHhhhhhhhcchhhHHHHHHHhcCCCcchhhhh
Q 041900 32 WCHQNY-VPTVDEYMAVALVTSACPILSTISFVGMGDIVTKESFE 75 (101)
Q Consensus 32 W~~~~~-vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~~~~e~~~ 75 (101)
|+..++ .|.++||.+ .++...|+.-|..++.+.+.
T Consensus 100 yrY~~~~s~~lQE~VE---------A~~f~~yL~~~~L~t~eev~ 135 (249)
T 3axj_A 100 YRYSDHWTFITQRLIF---------IIALVIYLEAGFLVTRETVA 135 (249)
T ss_dssp HHHGGGTHHHHHHHHH---------HHHHHHHHHHSSCCCHHHHH
T ss_pred HHHhhhccHHHHHHHH---------HHHHHHHHcCCCCCCHHHHH
Confidence 443333 467777764 22334455555555555444
No 70
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=21.66 E-value=24 Score=21.51 Aligned_cols=31 Identities=19% Similarity=0.465 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHhhh
Q 041900 10 YRLHYAKEAMKNLVKHYLFEAKWCHQNYVPTVDEYMAV 47 (101)
Q Consensus 10 ~~~~~~k~~~~~l~~~yl~EakW~~~~~vPt~eEYl~~ 47 (101)
-.+.|+.+.++++++.-| +.|+--||+|++.
T Consensus 64 ~~i~yf~~qyr~ML~~nl-------ddyi~nFd~Y~~~ 94 (96)
T 2lyy_A 64 EMMDYYMDRYKEMLDANM-------EDYIENFDHYRAT 94 (96)
T ss_dssp HHHHHHHGGGHHHHHHHH-------HHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhccc
Confidence 568888888888877776 3577778888764
No 71
>2q82_A Core protein P7; NESG, OC1, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.83A {Pseudomonas phage PHI12}
Probab=20.29 E-value=19 Score=22.70 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=8.7
Q ss_pred HHHHHhccccc
Q 041900 89 AVNRLMNDIMS 99 (101)
Q Consensus 89 ~i~RL~nDi~s 99 (101)
.+.|++|||+.
T Consensus 111 ~~~R~~~DIAD 121 (129)
T 2q82_A 111 SMVRVLNDIAD 121 (129)
T ss_dssp EHHHHHHHHHH
T ss_pred hHHHHHhhHhH
Confidence 47899999864
Done!