BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041902
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 187 bits (476), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 140/485 (28%), Positives = 236/485 (48%), Gaps = 41/485 (8%)
Query: 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE--DGLS- 64
+PH +++ +P QGHINP +LA+ L G +TF T + ++R+ S P+ DG +
Sbjct: 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD 65
Query: 65 --FASFSDGYD--DGFNSKQNDPRRYVSEFKRRSSEALTEIITG-SENQGAQPFTCLVYS 119
F S DG +G D ++ + E++T + + P TCLV
Sbjct: 66 FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSD 125
Query: 120 LLLPWTAEVARAYHLPSALLWIQPAXXXXXXXXXXXXXXXXI------EEKVNDLIE--- 170
+ +T + A + LP+ L + A I N +E
Sbjct: 126 CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKV 185
Query: 171 --LPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAE 228
+PGL D+ F+ ND +L F E + + ++T IL+NTF+ LE++
Sbjct: 186 DWIPGLKNFRLKDIVDFIRTTNPND---IMLEFFIEVADRVNKDT--TILLNTFNELESD 240
Query: 229 TLRAIDKF--NMIAIGPLVASALWDGKELYGGD-LCKNSSKE--YYMEWLSSKPKSSVIY 283
+ A+ ++ IGPL S L +++ D L N KE ++WL SK SV+Y
Sbjct: 241 VINALSSTIPSIYPIGPL-PSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 284 VAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVM-KYKEELNEKG 342
V FG+ V+ Q+ E A GL + FLW+IR D G + ++ E+ ++G
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR----PDLVIGGSVIFSSEFTNEIADRG 355
Query: 343 MIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCK 402
+I WC Q +VL+H ++G F+THCGWNS+ ES+ GVP++ +P + DQ T+ + I + +
Sbjct: 356 LIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWE 415
Query: 403 TGVRVKANEEGILESDEIKRCL-ELVMGE-GDEFRGNSLKWKDLAREAAKQGGSSYKNLK 460
G+ + N ++ +E+ + + E++ G+ G + + +++ K A E + GG SY NL
Sbjct: 416 IGMEIDTN----VKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLN 471
Query: 461 AFVDD 465
+ D
Sbjct: 472 KVIKD 476
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 144/478 (30%), Positives = 230/478 (48%), Gaps = 53/478 (11%)
Query: 11 PHFLLVTFPAQGHINPALQLARRLIRI-GTRVTFATT-----IFAYRRMANSPTPEDGLS 64
PH ++ P GH+ P ++ A+RL+ + G VTF A R + +S
Sbjct: 7 PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLPSSISSV 66
Query: 65 FASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPW 124
F D D +S + + R +S RS+ L ++ G P T LV L
Sbjct: 67 FLPPVD-LTDLSSSTRIESR--ISLTVTRSNPELRKVFDSFVEGGRLP-TALVVDLFGTD 122
Query: 125 TAEVARAYHLPSALLWIQPAXXXXXXXXXXXXXXXXIEE--KVNDLIELPGLPPLTGWDL 182
+VA +H+P + + A E ++ + + LPG P+ G D
Sbjct: 123 AFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLMLPGCVPVAGKD- 181
Query: 183 PSFMDPR--KSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAI-----DK 235
F+DP + +DAY ++L K EA ILVNTF LE ++A+ DK
Sbjct: 182 --FLDPAQDRKDDAYKWLLHNTKRYKEA------EGILVNTFFELEPNAIKALQEPGLDK 233
Query: 236 FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKR 295
+ +GPLV G K + + ++WL ++P SV+YV+FG+ L
Sbjct: 234 PPVYPVGPLVN---------IGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCE 284
Query: 296 QVEEIARGLLDSGHPFLWVIREHENK------DKDKGEDDVVM---KYKEELNEKGMIVP 346
Q+ E+A GL DS FLWVIR D D + + E ++G ++P
Sbjct: 285 QLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIP 344
Query: 347 -WCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGV 405
W Q +VL+H + G F+THCGWNS+LES+V G+P++A+P + +Q NA ++ + + +
Sbjct: 345 FWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAAL 404
Query: 406 RVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAA----KQGGSSYKNL 459
R +A ++G++ +E+ R ++ +M EG+E +G K K+L +EAA K G+S K L
Sbjct: 405 RPRAGDDGLVRREEVARVVKGLM-EGEEGKGVRNKMKEL-KEAACRVLKDDGTSTKAL 460
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 204/485 (42%), Gaps = 61/485 (12%)
Query: 1 MEQEQHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFAT--------TIFAYRR 52
+ E + + H ++ FP H P L L +++ +VTF+ T+F+
Sbjct: 4 FKNEMNGNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSR-- 61
Query: 53 MANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQP 112
+N P + + + DG G+ S N PR + F + E +I + + +
Sbjct: 62 -SNEFLPN--IKYYNVHDGLPKGYVSSGN-PREPIFLFIKAMQENFKHVIDEAVAETGKN 117
Query: 113 FTCLVYSLLLPWTAEVARAYHLPSALLWIQPAXXXXXXXXXXXXXXXXIEEKVNDLIE-- 170
TCLV + A++A H LW ++V+D+
Sbjct: 118 ITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSID 177
Query: 171 -LPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETD-PKILVNTFDALEAE 228
LPG P L DLP E ++++ D P + LE
Sbjct: 178 VLPGFPELKASDLP-----------------------EGVIKDIDVPFATMLHKMGLELP 214
Query: 229 TLRAIDKFNMIAIGPLVASALWDGKELYGG----DLC----KNSSKEYYMEWLSSKPKSS 280
A+ + I PL+ + L +L +L K S + +EWL SS
Sbjct: 215 RANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSS 274
Query: 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNE 340
V+Y++FG++ ++ +A L + G PF+W R + KG + E
Sbjct: 275 VVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDPKEKLPKG-------FLERTKT 327
Query: 341 KGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDF 400
KG IV W QVE+L H +VG F+TH GWNS LE +V GVP+++ P + DQG N +
Sbjct: 328 KGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESV 387
Query: 401 CKTGVRVKANEEGILESDEIKRCLELVMG--EGDEFRGNSLKWKDLAREAAKQGGSSYKN 458
+ GV V + G+L + IK+ LEL M +G R +K K+ A +A +Q G+S +
Sbjct: 388 LEIGVGV---DNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMD 444
Query: 459 LKAFV 463
+
Sbjct: 445 FTTLI 449
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 118/479 (24%), Positives = 204/479 (42%), Gaps = 61/479 (12%)
Query: 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFAS-- 67
PH ++ FP H P L + RRL F+ F +N+ D +
Sbjct: 7 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFS---FFSTSQSNASIFHDSMHTMQCN 63
Query: 68 -----FSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL 122
SDG +G+ P+ + F R + E+ + + + + +P +CLV +
Sbjct: 64 IKSYDISDGVPEGY-VFAGRPQEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFI 122
Query: 123 PWTAEVARAYHLPSALLWIQP----AXXXXXXXXXXXXXXXXIEEKVNDLIE-LPGLPPL 177
+ A++A + W + I+ + ++L+ +PG+ +
Sbjct: 123 WFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKV 182
Query: 178 TGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALE----------A 227
DL + N +S +L +M ++ + + +N+F+ L+
Sbjct: 183 RFRDLQEGIVFGNLNSLFSRML----HRMGQVLPKAT-AVFINSFEELDDSLTNDLKSKL 237
Query: 228 ETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFG 287
+T I FN+I P+V + C ++WL + +SV+Y++FG
Sbjct: 238 KTYLNIGPFNLITPPPVVPNTTG----------C--------LQWLKERKPTSVVYISFG 279
Query: 288 TICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPW 347
T+ +V ++ L S PF+W +R DK + + E+ GM+VPW
Sbjct: 280 TVTTPPPAEVVALSEALEASRVPFIWSLR-------DKARVHLPEGFLEKTRGYGMVVPW 332
Query: 348 CSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRV 407
Q EVL+HEAVG FVTHCGWNS ES+ GVP++ P + DQ N +++ D + GVR+
Sbjct: 333 APQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392
Query: 408 KANEEGILESDEIKRCLELVMGE--GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464
E G+ + C + ++ + G + R N ++ A A GSS +N VD
Sbjct: 393 ---EGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVD 448
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 139/262 (53%), Gaps = 21/262 (8%)
Query: 217 ILVNTFDALEAETLRAIDKFN-----MIAIGPLVASALWDGKELYGGDLCKNSSKEYYME 271
I+VNTF LE ++ A+ + + A+GPL+ +L + + ++
Sbjct: 215 IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKL------DQAQHDLILK 268
Query: 272 WLSSKPKSSVIYVAFGTICV-LEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDV 330
WL +P SV+++ FG++ V Q+ EIA GL SG FLW N + K +
Sbjct: 269 WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----SNSAEKKVFPEG 323
Query: 331 VMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQ 390
+++ E L KGMI W QVEVL+H+A+G FV+HCGWNS LES+ GVP++ +P + +Q
Sbjct: 324 FLEWME-LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 391 GTNAKIIVDFCKTGVRVKANEE---GILESDEIKRCLELVMGEGDEFRGNSLKWKDLARE 447
NA +V G+ ++ + ++ ++EI++ L+ +M + + K+++R
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRN 442
Query: 448 AAKQGGSSYKNLKAFVDDFGTS 469
A GGSS ++ +DD S
Sbjct: 443 AVVDGGSSLISVGKLIDDITGS 464
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 138/259 (53%), Gaps = 21/259 (8%)
Query: 217 ILVNTFDALEAETLRAIDKFN-----MIAIGPLVASALWDGKELYGGDLCKNSSKEYYME 271
I+VNTF LE ++ A+ + + A+GPL+ +L + + ++
Sbjct: 215 IIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKL------DQAQHDLILK 268
Query: 272 WLSSKPKSSVIYVAFGTICV-LEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDV 330
WL +P SV+++ FG++ V Q+ EIA GL SG FLW N + K +
Sbjct: 269 WLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----SNSAEKKVFPEG 323
Query: 331 VMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQ 390
+++ E L KGMI W QVEVL+H+A+G FV+HCGWNS LES+ GVP++ +P + +Q
Sbjct: 324 FLEWME-LEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 391 GTNAKIIVDFCKTGVRVKANEE---GILESDEIKRCLELVMGEGDEFRGNSLKWKDLARE 447
NA +V G+ ++ + ++ ++EI++ L+ +M + + K+++R
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRN 442
Query: 448 AAKQGGSSYKNLKAFVDDF 466
A GGSS ++ +DD
Sbjct: 443 AVVDGGSSLISVGKLIDDI 461
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 347 WCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDF 400
W Q+++L+ + F+TH G S++E+L VP+VA PQ +Q NA+ IV+
Sbjct: 312 WVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI-FAYRRMANSPTP 59
H P GH+NP+L + + L+ G RV++A T FA + A TP
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAGATP 62
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 347 WCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTN--------AKIIV 398
W Q ++L H F+TH G N E++ G+P V P + DQ N A + V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 399 DF 400
DF
Sbjct: 135 DF 136
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFAT-TIFAYRRMANSPTP 59
H + + A GH+NP+L++ R L+ G RVT+A +FA + A P P
Sbjct: 9 HIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRP 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 337 ELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKI 396
EL + + W Q+ +L FVTH G S E L P++A PQ DQ NA +
Sbjct: 280 ELPDNVEVHDWVPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADM 337
Query: 397 I 397
+
Sbjct: 338 L 338
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT-IFA 49
Q H L GH+ P+L L L R G R+T+ TT +FA
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFA 44
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 415
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46
+H H L+V + G I P L + L+R G RV++ T
Sbjct: 18 RHXAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTA 56
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46
+H H L+V + G I P L + L+R G RV++ T
Sbjct: 18 RHXAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTA 56
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 347 WCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQ 390
W Q +L H V V H G ++L +L GVP ++FP D
Sbjct: 299 WVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
>pdb|1DQN|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQN|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With A Transition
State Analogue
pdb|1DQP|A Chain A, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
pdb|1DQP|B Chain B, Crystal Structure Of Giardia Guanine
Phosphoribosyltransferase Complexed With Immucilling
Length = 230
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 200 TCFKEQMEAIVEETDPKILVNTFD---ALEAETLRAIDKFNMIAIGPLVASALWDGKELY 256
T FK++ + + E L+ TF+ AL A+T R ++++ P+ AL G LY
Sbjct: 16 TFFKDRNDVLESEVKKFHLLATFEECKALAADTARRMNEYYKDVAEPVTLVALLTGAYLY 75
Query: 257 GGDLCKNSSKEYYMEWLSSKP-----KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPF 311
L + + Y + ++ + SV++ + EKR+V I +DSGH
Sbjct: 76 ASLLTVHLTFPYTLHFVKVSSYKGTRQESVVFDEEDLKQLKEKREVVLIDE-YVDSGHTI 134
Query: 312 LWV 314
+
Sbjct: 135 FSI 137
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 344 IVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKT 403
+V W +L E + H G + L +L GVP P + Q TN ++
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGL--- 346
Query: 404 GVRVKANEEGILESDEIKRCLE 425
G+ A E G L +++ +R L+
Sbjct: 347 GIGFDA-EAGSLGAEQCRRLLD 367
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 344 IVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKT 403
+V W +L E + H G + L +L GVP P + Q TN ++
Sbjct: 292 VVEWIPLGALL--ETCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGL--- 346
Query: 404 GVRVKANEEGILESDEIKRCLE 425
G+ A E G L +++ +R L+
Sbjct: 347 GIGFDA-EAGSLGAEQCRRLLD 367
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 192 NDAYSFILTCFKEQM--EAIVEETDPKILVN 220
+D Y F ++C K+ + EA+VE DPK L++
Sbjct: 193 DDVYGFKMSCMKKAVIPEAVVEVLDPKTLIS 223
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,142,799
Number of Sequences: 62578
Number of extensions: 574908
Number of successful extensions: 1570
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1531
Number of HSP's gapped (non-prelim): 29
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)