Query 041902
Match_columns 470
No_of_seqs 112 out of 1440
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:53:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.5E-64 7.5E-69 505.6 46.2 433 9-468 6-450 (451)
2 PLN02555 limonoid glucosyltran 100.0 4E-64 8.6E-69 506.9 46.6 455 1-469 1-470 (480)
3 PLN02173 UDP-glucosyl transfer 100.0 2.2E-63 4.8E-68 497.4 46.8 433 9-467 4-447 (449)
4 PLN02210 UDP-glucosyl transfer 100.0 1.1E-62 2.3E-67 496.6 46.9 435 7-467 5-454 (456)
5 PLN02152 indole-3-acetate beta 100.0 1.9E-62 4.1E-67 491.6 47.1 441 9-466 2-454 (455)
6 PLN02562 UDP-glycosyltransfera 100.0 2E-62 4.2E-67 494.3 45.0 430 7-466 3-447 (448)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.7E-62 1E-66 493.4 46.4 450 5-469 4-472 (477)
8 PLN02207 UDP-glycosyltransfera 100.0 7.6E-61 1.7E-65 480.9 45.0 440 9-470 2-467 (468)
9 PLN02554 UDP-glycosyltransfera 100.0 1.6E-60 3.4E-65 485.6 44.0 435 10-469 2-479 (481)
10 PLN02448 UDP-glycosyltransfera 100.0 2.8E-60 6E-65 482.1 45.4 435 5-468 5-457 (459)
11 PLN02992 coniferyl-alcohol glu 100.0 2.5E-60 5.4E-65 478.1 43.6 432 6-468 2-469 (481)
12 PLN02534 UDP-glycosyltransfera 100.0 5.5E-60 1.2E-64 477.4 45.2 447 7-468 5-486 (491)
13 PLN02670 transferase, transfer 100.0 5.1E-60 1.1E-64 475.4 43.2 440 7-470 3-467 (472)
14 PLN02764 glycosyltransferase f 100.0 8.7E-60 1.9E-64 470.0 44.1 423 8-469 3-446 (453)
15 PLN03007 UDP-glucosyltransfera 100.0 9.7E-60 2.1E-64 480.5 45.5 443 10-470 5-482 (482)
16 PLN00164 glucosyltransferase; 100.0 1.1E-59 2.5E-64 477.6 44.1 438 8-469 1-474 (480)
17 PLN03004 UDP-glycosyltransfera 100.0 8E-60 1.7E-64 472.1 42.2 428 10-457 3-450 (451)
18 PLN02208 glycosyltransferase f 100.0 9.6E-60 2.1E-64 472.2 42.7 421 7-469 1-440 (442)
19 PLN03015 UDP-glucosyl transfer 100.0 1.8E-59 4E-64 469.0 44.3 434 9-467 2-467 (470)
20 PLN00414 glycosyltransferase f 100.0 2.9E-59 6.3E-64 469.3 43.3 422 7-470 1-442 (446)
21 PLN02167 UDP-glycosyltransfera 100.0 6.4E-59 1.4E-63 473.2 44.9 442 9-468 2-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.7E-45 3.6E-50 376.5 32.6 404 11-469 21-467 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 7.9E-44 1.7E-48 358.1 32.4 374 16-464 1-388 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 3.9E-46 8.4E-51 386.7 13.4 397 12-468 2-443 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 2.6E-43 5.6E-48 355.8 25.0 373 11-465 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 8.5E-42 1.8E-46 340.2 20.9 389 10-466 1-398 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.3E-38 5.1E-43 328.4 22.2 402 10-460 5-447 (496)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 3E-25 6.5E-30 217.0 27.1 306 11-427 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 3.6E-24 7.9E-29 210.8 33.3 320 12-440 3-335 (352)
30 TIGR00661 MJ1255 conserved hyp 99.9 1.5E-22 3.3E-27 197.8 23.7 307 12-435 1-318 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.3E-20 5E-25 181.8 29.2 341 11-465 1-353 (357)
32 PRK00726 murG undecaprenyldiph 99.9 9.7E-19 2.1E-23 173.8 30.6 343 11-466 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.7E-17 1E-21 161.2 30.6 325 12-442 1-335 (350)
34 TIGR01133 murG undecaprenyldip 99.8 1.8E-15 3.9E-20 149.7 30.3 316 11-440 1-330 (348)
35 COG4671 Predicted glycosyl tra 99.7 5.6E-16 1.2E-20 144.2 23.2 340 6-432 5-366 (400)
36 TIGR00215 lpxB lipid-A-disacch 99.7 2.4E-15 5.3E-20 150.3 26.0 351 11-464 6-384 (385)
37 PRK13609 diacylglycerol glucos 99.7 1.9E-14 4E-19 144.4 26.8 163 277-465 200-368 (380)
38 TIGR03590 PseG pseudaminic aci 99.7 2.6E-15 5.6E-20 143.3 19.0 104 279-396 170-278 (279)
39 PRK00025 lpxB lipid-A-disaccha 99.6 3.3E-13 7.1E-18 135.3 27.0 352 10-468 1-377 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 8.9E-16 1.9E-20 135.4 -1.1 139 281-434 1-147 (167)
41 PRK13608 diacylglycerol glucos 99.5 8.1E-11 1.8E-15 118.3 32.9 164 277-466 200-369 (391)
42 PLN02605 monogalactosyldiacylg 99.4 3.7E-10 8E-15 113.3 30.7 174 268-465 195-378 (382)
43 PF03033 Glyco_transf_28: Glyc 99.4 4.1E-14 8.8E-19 120.7 -0.1 126 13-144 1-132 (139)
44 TIGR03492 conserved hypothetic 99.4 2.8E-10 6.1E-15 114.0 25.8 336 21-439 7-372 (396)
45 cd03814 GT1_like_2 This family 99.3 1.3E-08 2.8E-13 100.4 34.3 112 337-465 244-362 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.4E-08 3.1E-13 104.5 35.2 134 281-439 264-408 (465)
47 cd03794 GT1_wbuB_like This fam 99.2 3.8E-08 8.2E-13 97.7 30.8 347 12-441 1-375 (394)
48 cd03800 GT1_Sucrose_synthase T 99.2 1E-07 2.2E-12 95.8 32.6 340 11-435 7-372 (398)
49 cd03818 GT1_ExpC_like This fam 99.1 4.7E-07 1E-11 91.3 35.1 86 339-437 280-372 (396)
50 COG3980 spsG Spore coat polysa 99.1 1E-08 2.2E-13 93.5 20.1 295 11-444 1-306 (318)
51 cd03823 GT1_ExpE7_like This fa 99.1 8.9E-08 1.9E-12 94.2 28.7 90 338-440 241-338 (359)
52 cd04962 GT1_like_5 This family 99.1 2.5E-07 5.4E-12 92.1 31.9 112 339-466 252-368 (371)
53 cd03808 GT1_cap1E_like This fa 99.1 5.3E-07 1.2E-11 88.2 33.8 321 12-438 1-336 (359)
54 cd03816 GT1_ALG1_like This fam 99.1 6.6E-07 1.4E-11 90.8 34.8 118 9-139 2-127 (415)
55 PRK10307 putative glycosyl tra 99.1 6.6E-07 1.4E-11 90.7 34.1 162 280-467 229-406 (412)
56 PRK05749 3-deoxy-D-manno-octul 99.1 3.2E-07 7E-12 93.4 31.9 106 351-470 314-425 (425)
57 cd03817 GT1_UGDG_like This fam 99.1 3.2E-07 7E-12 90.5 31.2 83 338-434 257-346 (374)
58 cd03801 GT1_YqgM_like This fam 99.1 8.3E-07 1.8E-11 87.0 32.7 111 338-465 254-372 (374)
59 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 7E-09 1.5E-13 103.2 16.8 139 278-437 197-343 (363)
60 TIGR02468 sucrsPsyn_pln sucros 99.0 2.1E-06 4.5E-11 93.6 35.0 406 3-466 162-668 (1050)
61 TIGR00236 wecB UDP-N-acetylglu 99.0 2.5E-07 5.3E-12 92.3 25.0 137 279-440 197-343 (365)
62 cd03820 GT1_amsD_like This fam 99.0 1.5E-06 3.3E-11 84.6 30.2 94 339-445 234-333 (348)
63 cd03798 GT1_wlbH_like This fam 99.0 3E-06 6.6E-11 83.3 31.7 84 338-434 257-347 (377)
64 cd03795 GT1_like_4 This family 99.0 3.1E-06 6.8E-11 83.5 31.8 133 281-436 192-337 (357)
65 TIGR02472 sucr_P_syn_N sucrose 98.9 4.9E-06 1.1E-10 85.1 33.0 113 338-466 315-438 (439)
66 cd03805 GT1_ALG2_like This fam 98.9 5.4E-06 1.2E-10 83.3 32.6 85 338-436 278-369 (392)
67 TIGR03449 mycothiol_MshA UDP-N 98.9 1.6E-05 3.4E-10 80.4 35.4 89 339-440 282-377 (405)
68 cd03825 GT1_wcfI_like This fam 98.9 5.3E-06 1.2E-10 82.1 30.7 113 338-466 242-362 (365)
69 PF04007 DUF354: Protein of un 98.8 6.3E-06 1.4E-10 80.0 27.7 301 11-429 1-309 (335)
70 cd03821 GT1_Bme6_like This fam 98.8 2.8E-05 6E-10 76.6 33.5 108 338-463 260-374 (375)
71 cd03796 GT1_PIG-A_like This fa 98.8 1.4E-05 2.9E-10 80.8 31.2 79 339-432 249-334 (398)
72 cd05844 GT1_like_7 Glycosyltra 98.8 1E-05 2.2E-10 80.4 28.9 86 338-436 243-341 (367)
73 cd03799 GT1_amsK_like This is 98.7 3.7E-05 8E-10 75.8 31.0 84 338-434 234-330 (355)
74 cd03819 GT1_WavL_like This fam 98.7 4.3E-05 9.3E-10 75.4 31.3 306 21-434 10-334 (355)
75 cd03807 GT1_WbnK_like This fam 98.7 6.7E-05 1.5E-09 73.5 32.2 109 338-464 249-362 (365)
76 PRK09922 UDP-D-galactose:(gluc 98.7 5.2E-06 1.1E-10 82.6 23.7 133 281-433 181-326 (359)
77 cd03802 GT1_AviGT4_like This f 98.7 9.4E-06 2E-10 79.4 24.9 152 282-464 173-332 (335)
78 cd03822 GT1_ecORF704_like This 98.7 4.5E-05 9.8E-10 75.2 29.7 109 338-464 245-363 (366)
79 cd03811 GT1_WabH_like This fam 98.7 9.4E-06 2E-10 79.0 24.4 89 339-440 245-341 (353)
80 cd04951 GT1_WbdM_like This fam 98.7 6.5E-05 1.4E-09 74.1 30.3 107 339-463 244-355 (360)
81 PRK14089 ipid-A-disaccharide s 98.6 8.9E-06 1.9E-10 79.6 22.7 160 280-462 168-344 (347)
82 cd03812 GT1_CapH_like This fam 98.6 7.3E-05 1.6E-09 73.8 29.3 89 338-440 247-340 (358)
83 TIGR03568 NeuC_NnaA UDP-N-acet 98.6 8.8E-06 1.9E-10 80.9 22.2 130 278-429 200-338 (365)
84 TIGR02149 glgA_Coryne glycogen 98.6 0.00033 7.1E-09 70.2 32.9 162 281-465 202-383 (388)
85 PLN02275 transferase, transfer 98.6 0.00017 3.7E-09 72.0 30.0 123 9-141 3-134 (371)
86 cd04955 GT1_like_6 This family 98.6 0.00013 2.9E-09 72.0 28.9 154 283-465 196-361 (363)
87 TIGR03088 stp2 sugar transfera 98.5 0.00038 8.2E-09 69.5 30.8 110 340-465 255-369 (374)
88 cd03809 GT1_mtfB_like This fam 98.5 0.00015 3.4E-09 71.3 27.4 92 338-444 251-349 (365)
89 PLN02846 digalactosyldiacylgly 98.5 0.00013 2.8E-09 74.0 26.9 122 283-432 231-364 (462)
90 PRK01021 lpxB lipid-A-disaccha 98.5 0.00041 9E-09 71.6 30.0 188 235-448 380-588 (608)
91 PF02350 Epimerase_2: UDP-N-ac 98.5 6.6E-06 1.4E-10 81.0 16.4 192 215-440 124-327 (346)
92 PRK15179 Vi polysaccharide bio 98.5 0.002 4.4E-08 68.9 35.9 95 338-442 572-674 (694)
93 PRK15427 colanic acid biosynth 98.4 0.001 2.2E-08 67.3 31.0 114 338-466 277-403 (406)
94 TIGR03087 stp1 sugar transfera 98.4 0.00076 1.6E-08 68.0 28.9 108 339-464 279-392 (397)
95 COG0381 WecB UDP-N-acetylgluco 98.3 0.00013 2.7E-09 70.8 21.4 333 10-444 3-354 (383)
96 PF02684 LpxB: Lipid-A-disacch 98.3 0.00058 1.3E-08 67.4 26.4 200 235-459 152-368 (373)
97 KOG3349 Predicted glycosyltran 98.3 3.1E-06 6.7E-11 69.9 8.5 119 280-409 4-134 (170)
98 TIGR02470 sucr_synth sucrose s 98.3 0.0086 1.9E-07 64.5 35.6 86 339-437 618-719 (784)
99 cd03806 GT1_ALG11_like This fa 98.2 0.0023 5.1E-08 65.0 28.8 81 338-432 303-393 (419)
100 cd03792 GT1_Trehalose_phosphor 98.2 0.0025 5.4E-08 63.6 28.2 112 338-467 250-370 (372)
101 PLN00142 sucrose synthase 98.2 0.0049 1.1E-07 66.4 30.4 88 339-439 641-744 (815)
102 PLN02949 transferase, transfer 98.1 0.0048 1E-07 63.3 28.7 80 338-429 333-421 (463)
103 COG1519 KdtA 3-deoxy-D-manno-o 98.1 0.013 2.8E-07 57.7 32.8 324 12-445 50-400 (419)
104 cd03804 GT1_wbaZ_like This fam 98.1 0.00051 1.1E-08 67.9 20.0 135 282-440 197-336 (351)
105 PRK00654 glgA glycogen synthas 98.0 0.0038 8.2E-08 64.4 26.0 85 337-429 334-427 (466)
106 cd03813 GT1_like_3 This family 97.9 0.037 8E-07 57.3 30.6 90 338-440 352-451 (475)
107 cd04950 GT1_like_1 Glycosyltra 97.8 0.043 9.4E-07 54.8 29.7 109 339-468 253-371 (373)
108 COG5017 Uncharacterized conser 97.8 0.00031 6.7E-09 57.2 10.8 127 282-429 2-141 (161)
109 cd03791 GT1_Glycogen_synthase_ 97.8 0.011 2.4E-07 61.1 24.5 84 338-429 349-441 (476)
110 PLN02316 synthase/transferase 97.7 0.13 2.8E-06 57.2 34.9 114 339-462 899-1027(1036)
111 COG0763 LpxB Lipid A disacchar 97.7 0.053 1.1E-06 52.9 26.0 202 235-466 155-379 (381)
112 TIGR02095 glgA glycogen/starch 97.7 0.095 2.1E-06 54.2 30.6 82 337-429 343-436 (473)
113 PRK15484 lipopolysaccharide 1, 97.7 0.0039 8.4E-08 62.5 18.7 116 337-468 254-377 (380)
114 cd04949 GT1_gtfA_like This fam 97.6 0.015 3.2E-07 57.9 22.5 86 338-433 259-347 (372)
115 PF00534 Glycos_transf_1: Glyc 97.6 0.002 4.3E-08 56.5 14.2 91 338-441 71-168 (172)
116 cd04946 GT1_AmsK_like This fam 97.6 0.0032 7E-08 63.7 17.1 111 340-463 289-406 (407)
117 TIGR02918 accessory Sec system 97.6 0.049 1.1E-06 56.5 25.5 96 339-442 375-481 (500)
118 PF13844 Glyco_transf_41: Glyc 97.5 0.0026 5.6E-08 64.3 14.0 148 278-438 283-437 (468)
119 PRK10125 putative glycosyl tra 97.4 0.17 3.7E-06 51.1 28.4 99 297-424 258-365 (405)
120 PRK10017 colanic acid biosynth 97.1 0.4 8.7E-06 48.6 25.1 180 269-469 224-425 (426)
121 PLN02501 digalactosyldiacylgly 97.0 0.43 9.2E-06 50.7 24.5 77 341-433 602-683 (794)
122 TIGR02193 heptsyl_trn_I lipopo 96.9 0.056 1.2E-06 52.7 17.1 105 12-135 1-108 (319)
123 PF13477 Glyco_trans_4_2: Glyc 96.7 0.022 4.7E-07 47.9 10.4 101 12-139 1-105 (139)
124 PF06722 DUF1205: Protein of u 96.6 0.003 6.5E-08 49.6 4.2 52 267-318 28-84 (97)
125 PRK10916 ADP-heptose:LPS hepto 96.5 0.94 2E-05 44.7 22.7 103 11-138 1-106 (348)
126 PF13692 Glyco_trans_1_4: Glyc 96.5 0.012 2.6E-07 49.2 7.6 79 339-429 52-134 (135)
127 PRK10422 lipopolysaccharide co 96.4 0.78 1.7E-05 45.4 21.0 107 9-138 4-113 (352)
128 PRK15490 Vi polysaccharide bio 96.3 1.7 3.7E-05 45.3 26.2 65 338-409 453-522 (578)
129 COG1817 Uncharacterized protei 96.3 1.1 2.4E-05 42.5 24.3 100 21-141 10-112 (346)
130 PRK09814 beta-1,6-galactofuran 96.1 0.033 7.1E-07 54.7 9.7 108 338-464 205-331 (333)
131 TIGR02201 heptsyl_trn_III lipo 96.0 1.8 4E-05 42.5 22.0 105 12-138 1-108 (344)
132 PRK10964 ADP-heptose:LPS hepto 95.9 1.6 3.4E-05 42.6 20.5 45 11-56 1-47 (322)
133 PF12000 Glyco_trans_4_3: Gkyc 95.5 0.18 3.9E-06 44.0 10.6 93 36-139 1-94 (171)
134 COG0859 RfaF ADP-heptose:LPS h 95.4 2.1 4.6E-05 42.0 19.2 105 10-138 1-107 (334)
135 KOG4626 O-linked N-acetylgluco 95.3 1.6 3.4E-05 45.3 17.5 135 278-429 757-903 (966)
136 TIGR02195 heptsyl_trn_II lipop 95.1 3.6 7.8E-05 40.3 22.5 102 12-138 1-105 (334)
137 PHA01633 putative glycosyl tra 94.7 0.64 1.4E-05 45.5 13.1 85 338-429 199-306 (335)
138 PF13524 Glyco_trans_1_2: Glyc 94.5 0.42 9.1E-06 36.8 9.3 83 365-464 9-92 (92)
139 PF13579 Glyco_trans_4_4: Glyc 94.1 0.098 2.1E-06 44.4 5.3 94 26-139 6-102 (160)
140 PRK14098 glycogen synthase; Pr 94.1 1 2.2E-05 46.8 13.6 82 337-428 359-449 (489)
141 PF01975 SurE: Survival protei 94.0 0.16 3.4E-06 45.6 6.6 42 11-53 1-42 (196)
142 PHA01630 putative group 1 glyc 94.0 2.2 4.7E-05 41.9 15.2 110 346-468 196-330 (331)
143 COG3914 Spy Predicted O-linked 93.9 1.7 3.6E-05 44.8 14.0 121 277-408 427-561 (620)
144 TIGR02400 trehalose_OtsA alpha 92.1 1.2 2.5E-05 45.8 10.4 101 346-467 342-455 (456)
145 PRK02797 4-alpha-L-fucosyltran 91.5 4.5 9.7E-05 38.7 12.6 131 284-428 149-292 (322)
146 PRK13932 stationary phase surv 91.2 3.1 6.6E-05 38.9 11.1 42 9-53 4-46 (257)
147 cd03788 GT1_TPS Trehalose-6-Ph 90.9 8.3 0.00018 39.7 15.2 100 346-466 347-459 (460)
148 PF08660 Alg14: Oligosaccharid 90.3 1.3 2.9E-05 38.7 7.5 112 15-139 2-127 (170)
149 TIGR03713 acc_sec_asp1 accesso 89.7 3.2 6.9E-05 43.3 11.1 76 340-433 409-490 (519)
150 cd02067 B12-binding B12 bindin 89.6 2.6 5.6E-05 34.3 8.4 102 12-138 1-107 (119)
151 PF13439 Glyco_transf_4: Glyco 89.2 2.3 5E-05 36.4 8.4 33 21-53 12-44 (177)
152 COG0496 SurE Predicted acid ph 89.1 2.8 6.1E-05 38.9 8.9 40 11-53 1-41 (252)
153 TIGR00087 surE 5'/3'-nucleotid 88.3 6.9 0.00015 36.4 11.1 40 11-53 1-41 (244)
154 PRK13933 stationary phase surv 88.0 6.4 0.00014 36.8 10.7 41 11-53 1-41 (253)
155 PF02441 Flavoprotein: Flavopr 87.8 0.84 1.8E-05 37.9 4.4 42 11-53 1-42 (129)
156 PRK02261 methylaspartate mutas 87.4 1.4 3.1E-05 37.0 5.5 57 8-69 1-61 (137)
157 PF06258 Mito_fiss_Elm1: Mitoc 87.3 11 0.00023 36.6 12.2 57 349-408 221-281 (311)
158 PRK13934 stationary phase surv 87.2 11 0.00023 35.5 11.6 41 11-53 1-41 (266)
159 PLN02939 transferase, transfer 87.0 15 0.00032 41.0 14.1 84 339-429 836-930 (977)
160 COG0003 ArsA Predicted ATPase 86.8 4.1 9E-05 39.5 9.0 42 10-51 1-43 (322)
161 COG2894 MinD Septum formation 86.6 2.8 6.2E-05 37.9 7.0 100 12-121 3-122 (272)
162 PRK13935 stationary phase surv 86.6 12 0.00025 35.1 11.4 41 11-53 1-41 (253)
163 COG1618 Predicted nucleotide k 86.3 1.7 3.6E-05 37.3 5.2 57 9-70 4-60 (179)
164 PF07429 Glyco_transf_56: 4-al 86.2 15 0.00033 35.7 12.3 133 282-429 186-332 (360)
165 PRK00346 surE 5'(3')-nucleotid 86.0 13 0.00028 34.8 11.4 41 11-53 1-41 (250)
166 cd01635 Glycosyltransferase_GT 85.9 3.4 7.4E-05 36.9 7.8 50 338-389 159-216 (229)
167 TIGR00715 precor6x_red precorr 85.7 6.3 0.00014 37.0 9.5 92 11-139 1-98 (256)
168 PLN03063 alpha,alpha-trehalose 85.4 12 0.00025 41.5 12.6 98 351-468 370-477 (797)
169 TIGR02370 pyl_corrinoid methyl 82.4 10 0.00022 34.1 9.0 103 9-137 83-190 (197)
170 PF02951 GSH-S_N: Prokaryotic 81.7 2.7 5.9E-05 34.3 4.6 40 11-50 1-43 (119)
171 TIGR02919 accessory Sec system 81.4 28 0.0006 35.6 12.7 138 277-444 281-425 (438)
172 cd02070 corrinoid_protein_B12- 81.0 13 0.00028 33.4 9.3 103 9-138 81-189 (201)
173 PRK14099 glycogen synthase; Pr 80.6 31 0.00067 35.8 13.1 91 338-436 348-452 (485)
174 PRK08305 spoVFB dipicolinate s 79.5 3.2 7E-05 37.1 4.7 46 8-53 3-48 (196)
175 PF05159 Capsule_synth: Capsul 78.7 5.5 0.00012 37.7 6.4 43 341-386 184-226 (269)
176 cd01635 Glycosyltransferase_GT 78.0 15 0.00032 32.7 8.9 26 20-45 12-37 (229)
177 PF04464 Glyphos_transf: CDP-G 77.2 2.4 5.3E-05 42.1 3.6 114 339-463 251-368 (369)
178 COG4370 Uncharacterized protei 77.2 6.2 0.00013 37.4 5.9 99 340-447 294-396 (412)
179 PRK05986 cob(I)alamin adenolsy 76.0 52 0.0011 29.3 11.2 100 9-123 21-126 (191)
180 smart00851 MGS MGS-like domain 75.3 21 0.00045 27.3 7.7 79 27-137 2-89 (90)
181 cd00561 CobA_CobO_BtuR ATP:cor 75.2 47 0.001 28.6 10.5 97 12-123 4-106 (159)
182 PF04127 DFP: DNA / pantothena 73.5 2.7 5.9E-05 37.3 2.5 52 11-69 4-67 (185)
183 COG0438 RfaG Glycosyltransfera 72.6 85 0.0018 29.4 17.1 87 340-439 257-350 (381)
184 PF01075 Glyco_transf_9: Glyco 71.9 6.5 0.00014 36.4 4.9 98 278-384 104-208 (247)
185 PRK06732 phosphopantothenate-- 71.8 6.3 0.00014 36.3 4.6 37 11-47 1-49 (229)
186 cd00550 ArsA_ATPase Oxyanion-t 71.2 12 0.00026 35.0 6.6 37 13-49 2-39 (254)
187 cd03789 GT1_LPS_heptosyltransf 71.1 39 0.00085 31.9 10.2 102 12-138 1-105 (279)
188 PRK13931 stationary phase surv 70.4 48 0.001 31.2 10.2 112 11-141 1-129 (261)
189 PRK05920 aromatic acid decarbo 70.1 7.1 0.00015 35.2 4.4 43 10-53 3-45 (204)
190 PRK05234 mgsA methylglyoxal sy 69.3 67 0.0015 27.1 9.9 98 8-139 2-112 (142)
191 PRK14099 glycogen synthase; Pr 69.3 5.9 0.00013 41.1 4.3 38 9-48 2-47 (485)
192 PF02142 MGS: MGS-like domain 69.0 4.5 9.7E-05 31.5 2.6 84 27-137 2-94 (95)
193 TIGR00708 cobA cob(I)alamin ad 68.9 66 0.0014 28.2 10.0 95 12-122 7-107 (173)
194 COG2185 Sbm Methylmalonyl-CoA 68.3 9.8 0.00021 32.0 4.5 45 8-52 10-54 (143)
195 COG1703 ArgK Putative periplas 68.0 59 0.0013 31.2 10.0 41 10-50 51-91 (323)
196 PRK07313 phosphopantothenoylcy 67.7 7.6 0.00016 34.4 4.1 42 11-53 2-43 (182)
197 PF06564 YhjQ: YhjQ protein; 67.1 79 0.0017 29.4 10.7 34 11-44 1-36 (243)
198 PF12146 Hydrolase_4: Putative 66.6 16 0.00034 27.4 5.0 35 10-44 15-49 (79)
199 PRK06029 3-octaprenyl-4-hydrox 66.3 8.8 0.00019 34.1 4.2 42 11-53 2-44 (185)
200 cd01425 RPS2 Ribosomal protein 65.9 10 0.00022 34.0 4.5 114 25-143 43-160 (193)
201 cd03789 GT1_LPS_heptosyltransf 65.8 27 0.00059 33.0 7.8 95 279-384 121-223 (279)
202 cd02069 methionine_synthase_B1 65.6 40 0.00088 30.6 8.5 56 9-69 87-146 (213)
203 cd01424 MGS_CPS_II Methylglyox 65.5 39 0.00086 26.8 7.6 83 23-138 11-100 (110)
204 cd01423 MGS_CPS_I_III Methylgl 65.2 44 0.00096 26.8 7.9 94 15-138 4-106 (116)
205 COG3563 KpsC Capsule polysacch 65.1 49 0.0011 33.6 9.3 82 293-387 165-253 (671)
206 PRK05973 replicative DNA helic 64.8 31 0.00067 32.0 7.6 48 6-53 60-107 (237)
207 TIGR02852 spore_dpaB dipicolin 64.0 9.6 0.00021 33.8 3.9 43 11-53 1-43 (187)
208 COG1797 CobB Cobyrinic acid a, 63.0 5.4 0.00012 39.9 2.4 40 12-51 2-43 (451)
209 TIGR02398 gluc_glyc_Psyn gluco 62.9 1.9E+02 0.0042 29.9 15.5 107 342-468 364-482 (487)
210 COG3660 Predicted nucleoside-d 62.8 1.4E+02 0.003 28.2 19.0 37 347-384 235-271 (329)
211 PF02310 B12-binding: B12 bind 62.7 15 0.00032 29.7 4.7 37 11-47 1-37 (121)
212 COG2910 Putative NADH-flavin r 62.0 10 0.00022 33.4 3.6 36 11-50 1-36 (211)
213 PRK13789 phosphoribosylamine-- 61.8 35 0.00075 34.8 8.1 36 7-47 1-36 (426)
214 cd03793 GT1_Glycogen_synthase_ 61.5 31 0.00068 36.3 7.7 77 350-429 468-551 (590)
215 cd01980 Chlide_reductase_Y Chl 60.6 46 0.001 33.7 8.8 27 111-140 349-375 (416)
216 PRK10867 signal recognition pa 60.1 67 0.0014 32.7 9.7 56 10-69 100-163 (433)
217 PF00731 AIRC: AIR carboxylase 60.0 1.1E+02 0.0024 26.1 12.0 139 281-447 2-148 (150)
218 COG2109 BtuR ATP:corrinoid ade 59.9 1.1E+02 0.0025 27.1 9.6 98 13-123 31-133 (198)
219 PF06506 PrpR_N: Propionate ca 59.8 1.2E+02 0.0026 26.5 11.0 114 21-145 16-155 (176)
220 COG0552 FtsY Signal recognitio 59.5 39 0.00085 32.8 7.4 61 9-69 138-201 (340)
221 PRK13982 bifunctional SbtC-lik 59.3 15 0.00032 37.8 4.9 55 8-69 254-320 (475)
222 PF02571 CbiJ: Precorrin-6x re 59.2 55 0.0012 30.6 8.3 37 11-53 1-37 (249)
223 TIGR02015 BchY chlorophyllide 58.9 69 0.0015 32.6 9.6 90 12-140 287-380 (422)
224 cd01974 Nitrogenase_MoFe_beta 58.8 47 0.001 33.9 8.5 27 111-140 376-402 (435)
225 COG0541 Ffh Signal recognition 58.5 33 0.00071 34.6 6.9 61 8-68 98-161 (451)
226 PRK07313 phosphopantothenoylcy 58.1 1.3E+02 0.0029 26.5 10.7 137 281-429 4-179 (182)
227 PF06925 MGDG_synth: Monogalac 58.0 31 0.00067 29.9 6.2 22 23-44 1-23 (169)
228 PRK05579 bifunctional phosphop 57.9 16 0.00036 36.7 4.9 46 7-53 3-48 (399)
229 TIGR00347 bioD dethiobiotin sy 57.7 43 0.00093 28.7 7.1 28 17-44 5-32 (166)
230 PF07015 VirC1: VirC1 protein; 57.5 27 0.00058 32.1 5.7 39 13-51 4-43 (231)
231 PLN02939 transferase, transfer 57.2 15 0.00032 41.0 4.7 43 6-48 477-525 (977)
232 cd02071 MM_CoA_mut_B12_BD meth 56.8 21 0.00045 29.2 4.6 36 12-47 1-36 (122)
233 PRK14098 glycogen synthase; Pr 56.6 14 0.00031 38.3 4.4 39 8-48 3-49 (489)
234 PLN02470 acetolactate synthase 56.1 51 0.0011 35.1 8.6 27 359-385 77-109 (585)
235 COG4394 Uncharacterized protei 56.1 1.9E+02 0.0041 27.6 11.5 112 342-467 240-369 (370)
236 TIGR02700 flavo_MJ0208 archaeo 55.7 17 0.00038 33.5 4.4 44 12-56 1-46 (234)
237 PRK06718 precorrin-2 dehydroge 55.6 57 0.0012 29.4 7.6 145 278-448 10-165 (202)
238 TIGR01425 SRP54_euk signal rec 55.5 98 0.0021 31.5 9.9 40 11-50 101-140 (429)
239 PRK14501 putative bifunctional 55.4 39 0.00084 37.1 7.7 103 345-468 347-462 (726)
240 PRK06849 hypothetical protein; 55.4 22 0.00049 35.5 5.5 38 7-48 1-38 (389)
241 PF02374 ArsA_ATPase: Anion-tr 55.3 17 0.00036 35.2 4.4 41 11-51 1-42 (305)
242 cd07039 TPP_PYR_POX Pyrimidine 55.0 1.1E+02 0.0024 26.4 9.1 28 357-386 64-97 (164)
243 PRK11519 tyrosine kinase; Prov 54.8 1.7E+02 0.0036 32.2 12.4 37 11-47 526-564 (719)
244 PF09001 DUF1890: Domain of un 54.4 16 0.00034 30.4 3.3 30 24-53 13-42 (139)
245 KOG2884 26S proteasome regulat 54.1 60 0.0013 29.3 7.0 67 3-71 100-176 (259)
246 COG1484 DnaC DNA replication p 53.8 22 0.00049 33.3 4.8 45 9-53 104-148 (254)
247 KOG0853 Glycosyltransferase [C 53.8 9.3 0.0002 39.2 2.4 63 370-441 381-443 (495)
248 KOG1387 Glycosyltransferase [C 53.5 2.3E+02 0.005 27.9 22.3 272 111-447 149-445 (465)
249 TIGR00421 ubiX_pad polyprenyl 53.5 15 0.00033 32.5 3.4 41 12-53 1-41 (181)
250 PRK06249 2-dehydropantoate 2-r 53.4 24 0.00052 34.2 5.1 48 9-67 4-51 (313)
251 PF01012 ETF: Electron transfe 53.4 42 0.00091 28.9 6.2 105 12-140 1-121 (164)
252 cd02037 MRP-like MRP (Multiple 53.1 51 0.0011 28.4 6.8 35 13-47 2-37 (169)
253 TIGR02113 coaC_strep phosphopa 52.4 20 0.00043 31.6 3.9 41 12-53 2-42 (177)
254 COG2120 Uncharacterized protei 51.5 27 0.00058 32.3 4.9 46 1-46 1-46 (237)
255 TIGR01501 MthylAspMutase methy 51.1 35 0.00076 28.5 5.0 58 11-69 2-59 (134)
256 PF04413 Glycos_transf_N: 3-De 50.4 59 0.0013 28.8 6.7 101 12-141 22-126 (186)
257 TIGR02699 archaeo_AfpA archaeo 49.2 25 0.00054 30.8 4.0 41 12-53 1-43 (174)
258 PF09314 DUF1972: Domain of un 48.7 1.9E+02 0.0042 25.6 10.5 46 21-69 16-62 (185)
259 PRK09620 hypothetical protein; 48.6 21 0.00046 32.9 3.7 38 10-47 3-52 (229)
260 PRK04885 ppnK inorganic polyph 48.0 30 0.00065 32.7 4.7 51 356-429 35-92 (265)
261 PF02826 2-Hacid_dh_C: D-isome 47.9 77 0.0017 27.7 7.1 107 278-426 36-143 (178)
262 COG2874 FlaH Predicted ATPases 47.1 1.3E+02 0.0028 27.4 8.2 36 15-50 33-68 (235)
263 PRK08506 replicative DNA helic 46.7 1.5E+02 0.0033 30.6 10.0 48 6-53 188-235 (472)
264 cd01421 IMPCH Inosine monophos 46.7 60 0.0013 28.7 6.0 38 25-69 11-48 (187)
265 TIGR00355 purH phosphoribosyla 46.6 47 0.001 34.2 6.0 85 25-121 11-100 (511)
266 TIGR00521 coaBC_dfp phosphopan 46.5 26 0.00057 35.1 4.2 43 10-53 3-45 (390)
267 PRK15062 hydrogenase isoenzyme 46.0 1.1E+02 0.0023 30.2 8.0 114 267-429 119-234 (364)
268 cd07035 TPP_PYR_POX_like Pyrim 45.8 1.4E+02 0.0031 25.0 8.4 28 357-386 60-93 (155)
269 TIGR00640 acid_CoA_mut_C methy 45.7 49 0.0011 27.5 5.1 56 9-69 1-60 (132)
270 PRK12921 2-dehydropantoate 2-r 45.6 32 0.00069 33.0 4.7 46 11-66 1-46 (305)
271 cd07038 TPP_PYR_PDC_IPDC_like 45.3 1E+02 0.0022 26.5 7.3 28 357-386 60-93 (162)
272 COG2861 Uncharacterized protei 45.2 1.1E+02 0.0025 28.1 7.6 43 91-138 133-178 (250)
273 COG0132 BioD Dethiobiotin synt 45.1 2E+02 0.0043 26.4 9.3 34 11-44 2-37 (223)
274 PRK08057 cobalt-precorrin-6x r 44.9 2.4E+02 0.0051 26.4 10.1 36 11-51 3-38 (248)
275 PRK11914 diacylglycerol kinase 44.9 98 0.0021 29.8 7.9 82 281-387 12-97 (306)
276 TIGR00725 conserved hypothetic 44.7 59 0.0013 28.0 5.7 99 267-386 21-123 (159)
277 TIGR00959 ffh signal recogniti 44.1 1.6E+02 0.0034 30.0 9.4 41 11-51 100-141 (428)
278 PRK01077 cobyrinic acid a,c-di 44.1 1.4E+02 0.0031 30.6 9.3 104 12-143 5-124 (451)
279 PRK02155 ppnK NAD(+)/NADH kina 43.7 38 0.00083 32.4 4.8 53 355-429 62-118 (291)
280 PRK14077 pnk inorganic polypho 43.6 36 0.00079 32.5 4.5 55 353-429 61-119 (287)
281 TIGR01007 eps_fam capsular exo 43.5 45 0.00098 29.8 5.0 38 9-46 15-54 (204)
282 COG0052 RpsB Ribosomal protein 43.4 65 0.0014 29.8 5.8 33 112-144 156-190 (252)
283 COG0859 RfaF ADP-heptose:LPS h 43.1 1.5E+02 0.0033 28.8 9.1 100 10-142 175-279 (334)
284 KOG1111 N-acetylglucosaminyltr 42.9 3.5E+02 0.0075 26.8 11.1 83 294-384 210-301 (426)
285 PRK05595 replicative DNA helic 42.6 1.6E+02 0.0034 30.1 9.4 47 7-53 198-245 (444)
286 PRK06522 2-dehydropantoate 2-r 42.4 28 0.00061 33.3 3.7 38 11-53 1-39 (304)
287 PF10093 DUF2331: Uncharacteri 42.4 3.6E+02 0.0078 26.9 24.2 60 13-72 3-70 (374)
288 TIGR02195 heptsyl_trn_II lipop 42.3 92 0.002 30.2 7.4 99 11-141 175-278 (334)
289 PRK00090 bioD dithiobiotin syn 41.9 1.3E+02 0.0028 27.2 7.8 33 13-45 2-35 (222)
290 PRK05579 bifunctional phosphop 41.8 3.6E+02 0.0077 27.2 11.5 138 279-429 7-182 (399)
291 PRK13982 bifunctional SbtC-lik 41.7 38 0.00082 34.9 4.6 44 9-53 69-112 (475)
292 cd03466 Nitrogenase_NifN_2 Nit 41.3 1.7E+02 0.0036 29.8 9.3 27 111-140 371-397 (429)
293 PRK00784 cobyric acid synthase 41.1 1.6E+02 0.0035 30.5 9.3 32 13-44 5-37 (488)
294 PRK13059 putative lipid kinase 41.1 1.2E+02 0.0026 29.1 7.8 67 295-387 19-91 (295)
295 PRK00881 purH bifunctional pho 40.7 84 0.0018 32.5 6.8 49 11-69 4-52 (513)
296 CHL00072 chlL photochlorophyll 40.5 50 0.0011 31.6 5.0 36 11-46 1-36 (290)
297 PRK12342 hypothetical protein; 40.3 58 0.0013 30.5 5.2 30 112-141 109-144 (254)
298 PRK13011 formyltetrahydrofolat 40.1 2.5E+02 0.0055 26.8 9.7 111 5-142 84-196 (286)
299 TIGR03878 thermo_KaiC_2 KaiC d 40.0 1.3E+02 0.0029 28.1 7.8 40 9-48 35-74 (259)
300 PRK06270 homoserine dehydrogen 39.6 1.5E+02 0.0033 29.1 8.4 59 349-408 80-150 (341)
301 PF08433 KTI12: Chromatin asso 39.5 3.4E+02 0.0073 25.7 12.0 106 13-151 4-115 (270)
302 PF10083 DUF2321: Uncharacteri 39.4 61 0.0013 27.6 4.6 71 384-465 78-148 (158)
303 PF01075 Glyco_transf_9: Glyco 39.3 1E+02 0.0022 28.3 6.9 100 9-142 104-211 (247)
304 PRK03359 putative electron tra 39.1 63 0.0014 30.3 5.3 30 112-141 112-147 (256)
305 TIGR01470 cysG_Nterm siroheme 39.1 2.9E+02 0.0063 24.8 11.7 147 278-447 9-164 (205)
306 PLN02929 NADH kinase 38.9 42 0.00091 32.3 4.1 64 356-429 64-136 (301)
307 PRK12311 rpsB 30S ribosomal pr 38.9 60 0.0013 31.6 5.2 34 111-144 151-186 (326)
308 TIGR01285 nifN nitrogenase mol 38.8 1.6E+02 0.0035 30.0 8.7 87 10-139 311-397 (432)
309 PRK06321 replicative DNA helic 38.7 2.2E+02 0.0049 29.4 9.7 46 8-53 224-270 (472)
310 TIGR00730 conserved hypothetic 38.4 99 0.0021 27.2 6.2 101 267-385 22-133 (178)
311 cd01452 VWA_26S_proteasome_sub 38.2 1.8E+02 0.0038 25.9 7.7 61 11-71 108-175 (187)
312 PF02702 KdpD: Osmosensitive K 38.2 55 0.0012 29.4 4.4 38 10-47 5-42 (211)
313 PRK13055 putative lipid kinase 38.1 1.5E+02 0.0032 29.0 8.1 83 281-387 6-94 (334)
314 PF01210 NAD_Gly3P_dh_N: NAD-d 37.8 23 0.0005 30.4 2.0 32 12-48 1-32 (157)
315 PRK04940 hypothetical protein; 37.6 92 0.002 27.5 5.7 31 112-142 60-91 (180)
316 PF06506 PrpR_N: Propionate ca 37.6 44 0.00096 29.2 3.9 31 355-388 33-63 (176)
317 PRK01175 phosphoribosylformylg 37.5 3.6E+02 0.0077 25.4 10.4 57 9-72 2-58 (261)
318 PF01695 IstB_IS21: IstB-like 36.9 57 0.0012 28.6 4.5 46 8-53 45-90 (178)
319 PRK06988 putative formyltransf 36.7 1.6E+02 0.0034 28.5 7.9 32 11-47 3-34 (312)
320 PTZ00318 NADH dehydrogenase-li 36.7 40 0.00087 34.2 4.0 44 1-49 1-44 (424)
321 KOG0780 Signal recognition par 36.6 1.1E+02 0.0024 30.5 6.5 59 9-67 100-161 (483)
322 PRK13057 putative lipid kinase 36.2 1.4E+02 0.003 28.4 7.4 66 296-387 14-83 (287)
323 cd02032 Bchl_like This family 36.0 60 0.0013 30.4 4.8 35 11-45 1-35 (267)
324 PRK14075 pnk inorganic polypho 35.9 84 0.0018 29.5 5.7 52 356-429 41-93 (256)
325 TIGR01281 DPOR_bchL light-inde 35.9 61 0.0013 30.4 4.8 34 11-44 1-34 (268)
326 PF06792 UPF0261: Uncharacteri 35.8 2.1E+02 0.0046 28.8 8.5 97 277-389 183-281 (403)
327 PRK04328 hypothetical protein; 35.7 2.4E+02 0.0052 26.1 8.8 46 8-53 21-66 (249)
328 KOG1250 Threonine/serine dehyd 35.6 2.2E+02 0.0048 28.5 8.4 61 362-432 248-317 (457)
329 PRK01911 ppnK inorganic polyph 35.5 60 0.0013 31.1 4.7 56 352-429 60-119 (292)
330 PF10649 DUF2478: Protein of u 35.4 2.9E+02 0.0063 23.8 12.1 120 15-143 3-133 (159)
331 PRK09165 replicative DNA helic 35.1 1.7E+02 0.0036 30.5 8.2 47 7-53 214-275 (497)
332 TIGR00750 lao LAO/AO transport 35.0 4.1E+02 0.0089 25.4 10.7 40 9-48 33-72 (300)
333 PF14626 RNase_Zc3h12a_2: Zc3h 34.8 51 0.0011 26.7 3.3 30 24-53 9-38 (122)
334 PRK05647 purN phosphoribosylgl 34.7 3.1E+02 0.0067 24.6 8.9 52 11-70 2-59 (200)
335 KOG2941 Beta-1,4-mannosyltrans 34.7 4.6E+02 0.01 25.9 31.6 124 6-143 8-139 (444)
336 PRK10916 ADP-heptose:LPS hepto 34.6 1.3E+02 0.0028 29.4 7.2 103 11-141 181-288 (348)
337 PRK02649 ppnK inorganic polyph 34.6 57 0.0012 31.5 4.4 52 355-429 67-123 (305)
338 PF01924 HypD: Hydrogenase for 34.6 98 0.0021 30.3 5.8 115 266-429 113-229 (355)
339 PLN02496 probable phosphopanto 34.5 63 0.0014 29.2 4.3 43 9-53 18-60 (209)
340 cd01715 ETF_alpha The electron 34.1 2.7E+02 0.006 23.9 8.3 31 111-141 82-115 (168)
341 PRK04539 ppnK inorganic polyph 34.0 66 0.0014 30.9 4.7 55 352-429 64-123 (296)
342 KOG3339 Predicted glycosyltran 34.0 1.8E+02 0.0039 25.7 6.7 25 13-37 40-64 (211)
343 cd02065 B12-binding_like B12 b 33.9 77 0.0017 25.4 4.6 36 13-48 2-37 (125)
344 TIGR02655 circ_KaiC circadian 33.9 2.7E+02 0.0057 28.9 9.5 47 7-53 260-306 (484)
345 COG1663 LpxK Tetraacyldisaccha 33.7 79 0.0017 30.8 5.1 35 16-50 55-89 (336)
346 PF07991 IlvN: Acetohydroxy ac 33.7 28 0.00062 30.0 1.9 51 10-70 4-56 (165)
347 PRK05636 replicative DNA helic 33.6 1.3E+02 0.0028 31.4 7.1 47 7-53 262-309 (505)
348 PRK08229 2-dehydropantoate 2-r 33.4 48 0.001 32.4 3.8 38 11-53 3-40 (341)
349 cd01141 TroA_d Periplasmic bin 33.0 63 0.0014 28.2 4.2 30 111-140 68-99 (186)
350 COG4088 Predicted nucleotide k 32.9 51 0.0011 29.8 3.4 36 11-46 1-37 (261)
351 PRK10416 signal recognition pa 32.7 3.7E+02 0.008 26.1 9.7 41 10-50 114-154 (318)
352 PRK14478 nitrogenase molybdenu 32.5 1.8E+02 0.0039 30.1 7.9 93 1-137 315-415 (475)
353 TIGR00379 cobB cobyrinic acid 32.4 3.2E+02 0.0069 28.0 9.7 106 13-144 2-121 (449)
354 TIGR00147 lipid kinase, YegS/R 32.3 1.1E+02 0.0023 29.3 5.9 82 281-387 5-92 (293)
355 TIGR02329 propionate_PrpR prop 32.1 2.4E+02 0.0053 29.6 8.8 111 21-142 36-172 (526)
356 PRK12446 undecaprenyldiphospho 32.1 1E+02 0.0023 30.3 5.9 27 356-384 91-120 (352)
357 PRK06027 purU formyltetrahydro 32.0 3.4E+02 0.0074 25.9 9.2 111 5-142 84-196 (286)
358 TIGR02201 heptsyl_trn_III lipo 31.9 1.9E+02 0.0042 28.1 7.8 27 113-141 261-287 (344)
359 PRK03372 ppnK inorganic polyph 31.8 70 0.0015 30.9 4.5 54 354-429 70-127 (306)
360 CHL00194 ycf39 Ycf39; Provisio 31.8 1.1E+02 0.0023 29.6 5.9 33 11-47 1-33 (317)
361 PRK08125 bifunctional UDP-gluc 31.8 1.9E+02 0.0041 31.3 8.3 30 11-45 1-30 (660)
362 PRK14619 NAD(P)H-dependent gly 31.8 52 0.0011 31.8 3.7 35 8-47 2-36 (308)
363 PF00862 Sucrose_synth: Sucros 31.8 87 0.0019 32.3 5.2 111 21-140 296-431 (550)
364 COG0503 Apt Adenine/guanine ph 31.5 1.2E+02 0.0027 26.6 5.7 37 100-139 44-82 (179)
365 PRK13337 putative lipid kinase 31.5 1.1E+02 0.0024 29.4 5.9 81 282-387 6-92 (304)
366 TIGR00075 hypD hydrogenase exp 31.4 2E+02 0.0043 28.4 7.4 48 267-315 125-172 (369)
367 PRK13234 nifH nitrogenase redu 31.4 87 0.0019 30.0 5.1 38 9-46 2-40 (295)
368 TIGR00745 apbA_panE 2-dehydrop 31.3 43 0.00094 31.7 3.0 34 29-67 5-38 (293)
369 PRK03378 ppnK inorganic polyph 31.0 67 0.0014 30.8 4.2 55 353-429 60-118 (292)
370 cd01985 ETF The electron trans 30.7 1.9E+02 0.0042 25.1 6.9 28 112-139 91-121 (181)
371 PF02572 CobA_CobO_BtuR: ATP:c 30.6 3.7E+02 0.008 23.5 10.3 96 12-122 5-106 (172)
372 PF07355 GRDB: Glycine/sarcosi 30.5 1E+02 0.0023 30.1 5.3 38 354-402 266-303 (349)
373 PF05225 HTH_psq: helix-turn-h 30.4 68 0.0015 21.0 2.9 25 416-441 1-26 (45)
374 PRK13695 putative NTPase; Prov 30.2 3.5E+02 0.0077 23.2 9.5 36 11-46 1-36 (174)
375 COG2236 Predicted phosphoribos 29.9 1.5E+02 0.0033 26.4 5.9 48 94-142 12-62 (192)
376 PF06418 CTP_synth_N: CTP synt 29.8 57 0.0012 30.6 3.3 41 11-51 1-44 (276)
377 PRK03708 ppnK inorganic polyph 29.7 71 0.0015 30.4 4.1 52 356-429 57-111 (277)
378 PRK10422 lipopolysaccharide co 29.6 1E+02 0.0022 30.3 5.4 27 113-141 263-289 (352)
379 PRK13768 GTPase; Provisional 29.5 1.7E+02 0.0036 27.3 6.5 37 12-48 4-40 (253)
380 PRK09841 cryptic autophosphory 29.4 7E+02 0.015 27.4 12.2 37 11-47 531-569 (726)
381 COG1448 TyrB Aspartate/tyrosin 29.4 5.9E+02 0.013 25.4 11.2 167 265-451 158-331 (396)
382 PRK00207 sulfur transfer compl 29.2 1E+02 0.0022 25.4 4.5 41 11-51 1-45 (128)
383 PRK13604 luxD acyl transferase 29.2 1.2E+02 0.0026 29.3 5.5 36 9-44 35-70 (307)
384 PRK02399 hypothetical protein; 29.2 3.7E+02 0.0079 27.1 8.9 93 277-386 184-279 (406)
385 PF08323 Glyco_transf_5: Starc 29.1 45 0.00097 31.0 2.6 22 27-48 22-43 (245)
386 COG0059 IlvC Ketol-acid reduct 28.9 69 0.0015 30.7 3.7 51 10-70 18-70 (338)
387 PLN02891 IMP cyclohydrolase 28.9 1.2E+02 0.0026 31.5 5.7 53 11-74 23-77 (547)
388 PF02558 ApbA: Ketopantoate re 28.9 41 0.00089 28.2 2.2 35 29-68 12-46 (151)
389 PRK06769 hypothetical protein; 28.8 3.8E+02 0.0083 23.1 10.4 94 27-141 33-138 (173)
390 TIGR00345 arsA arsenite-activa 28.7 1.6E+02 0.0035 28.0 6.4 22 28-49 3-24 (284)
391 PRK06067 flagellar accessory p 28.5 1.7E+02 0.0038 26.6 6.5 47 7-53 22-68 (234)
392 PRK10037 cell division protein 28.3 86 0.0019 29.1 4.4 33 12-44 3-36 (250)
393 PRK09423 gldA glycerol dehydro 28.3 2.2E+02 0.0048 28.2 7.5 94 267-387 19-117 (366)
394 PRK02231 ppnK inorganic polyph 27.9 65 0.0014 30.5 3.5 57 351-429 37-97 (272)
395 PRK01185 ppnK inorganic polyph 27.9 84 0.0018 29.8 4.2 52 356-429 52-104 (271)
396 KOG1509 Predicted nucleic acid 27.7 1.7E+02 0.0036 26.1 5.6 76 36-118 7-83 (209)
397 PRK08155 acetolactate synthase 27.6 1.8E+02 0.004 30.7 7.2 28 356-385 76-109 (564)
398 COG2327 WcaK Polysaccharide py 27.5 3.2E+02 0.0069 27.3 8.2 77 351-437 280-357 (385)
399 PRK03501 ppnK inorganic polyph 27.3 97 0.0021 29.2 4.5 53 356-429 39-96 (264)
400 PF02776 TPP_enzyme_N: Thiamin 27.1 2.1E+02 0.0046 24.7 6.4 29 356-386 64-98 (172)
401 COG2159 Predicted metal-depend 26.9 2.6E+02 0.0056 26.8 7.4 87 267-368 116-202 (293)
402 PF13460 NAD_binding_10: NADH( 26.9 90 0.0019 26.9 4.1 46 16-69 2-47 (183)
403 cd01983 Fer4_NifH The Fer4_Nif 26.9 1.4E+02 0.0031 22.0 4.8 33 13-45 2-34 (99)
404 COG0801 FolK 7,8-dihydro-6-hyd 26.7 1.3E+02 0.0028 25.9 4.7 29 281-309 3-31 (160)
405 PRK01231 ppnK inorganic polyph 26.6 1E+02 0.0022 29.6 4.6 53 355-429 61-117 (295)
406 cd02040 NifH NifH gene encodes 26.5 97 0.0021 28.9 4.5 33 12-44 3-35 (270)
407 COG1066 Sms Predicted ATP-depe 26.3 69 0.0015 32.1 3.4 41 12-53 95-135 (456)
408 PRK13849 putative crown gall t 26.2 1.1E+02 0.0024 28.1 4.7 36 12-47 3-39 (231)
409 PRK15469 ghrA bifunctional gly 26.1 5.4E+02 0.012 24.8 9.6 70 278-374 136-206 (312)
410 PHA02519 plasmid partition pro 26.1 1.2E+02 0.0027 30.3 5.3 37 9-45 104-142 (387)
411 COG0205 PfkA 6-phosphofructoki 25.8 3E+02 0.0064 27.2 7.6 116 10-139 2-124 (347)
412 PF02635 DrsE: DsrE/DsrF-like 25.8 2.3E+02 0.0051 22.2 6.2 43 11-53 1-49 (122)
413 COG4081 Uncharacterized protei 25.8 1.1E+02 0.0023 25.3 3.7 41 13-53 6-47 (148)
414 COG2085 Predicted dinucleotide 25.7 1E+02 0.0023 27.8 4.1 33 11-48 2-34 (211)
415 cd02034 CooC The accessory pro 25.7 1.5E+02 0.0033 23.9 4.8 37 12-48 1-37 (116)
416 cd03114 ArgK-like The function 25.5 4.1E+02 0.0088 22.3 10.8 35 13-47 2-36 (148)
417 cd01976 Nitrogenase_MoFe_alpha 25.5 81 0.0017 32.0 3.9 27 111-140 368-394 (421)
418 PRK07206 hypothetical protein; 25.5 3.3E+02 0.0071 27.3 8.4 32 12-48 4-35 (416)
419 TIGR02638 lactal_redase lactal 25.4 1.1E+02 0.0024 30.5 4.9 11 377-387 129-139 (379)
420 PF09334 tRNA-synt_1g: tRNA sy 25.2 57 0.0012 32.8 2.7 28 21-48 16-46 (391)
421 PRK06487 glycerate dehydrogena 25.2 2.4E+02 0.0053 27.3 7.0 62 278-370 148-209 (317)
422 cd08194 Fe-ADH6 Iron-containin 25.2 1.2E+02 0.0026 30.2 5.1 45 267-313 12-56 (375)
423 PF00282 Pyridoxal_deC: Pyrido 25.0 1.3E+02 0.0029 29.9 5.3 69 359-429 104-190 (373)
424 PRK13054 lipid kinase; Reviewe 24.9 1.3E+02 0.0028 28.9 5.1 68 295-387 18-93 (300)
425 cd02072 Glm_B12_BD B12 binding 24.8 1.3E+02 0.0029 24.8 4.3 57 12-69 1-57 (128)
426 PF13450 NAD_binding_8: NAD(P) 24.8 87 0.0019 22.4 2.9 18 28-45 9-26 (68)
427 PLN02935 Bifunctional NADH kin 24.8 1.1E+02 0.0024 31.6 4.7 52 355-429 261-317 (508)
428 PRK05632 phosphate acetyltrans 24.5 6.4E+02 0.014 27.5 10.8 33 12-44 4-37 (684)
429 PRK13869 plasmid-partitioning 24.4 1.5E+02 0.0032 30.0 5.5 36 10-45 120-157 (405)
430 PF13720 Acetyltransf_11: Udp 24.3 2.2E+02 0.0047 21.4 5.1 49 414-470 27-78 (83)
431 PRK13230 nitrogenase reductase 24.3 1.2E+02 0.0026 28.6 4.7 33 12-44 3-35 (279)
432 TIGR03880 KaiC_arch_3 KaiC dom 24.2 2.2E+02 0.0048 25.7 6.3 46 8-53 14-59 (224)
433 TIGR01990 bPGM beta-phosphoglu 24.2 2.9E+02 0.0063 23.7 6.9 30 27-56 92-121 (185)
434 PRK08410 2-hydroxyacid dehydro 24.2 2.8E+02 0.006 26.8 7.2 63 278-369 145-207 (311)
435 cd01965 Nitrogenase_MoFe_beta_ 24.1 1.1E+02 0.0025 31.0 4.7 27 111-140 370-396 (428)
436 COG0163 UbiX 3-polyprenyl-4-hy 24.0 1.7E+02 0.0037 25.8 4.9 43 10-53 2-44 (191)
437 PRK02122 glucosamine-6-phospha 23.9 1.2E+02 0.0026 32.8 4.9 39 7-45 366-404 (652)
438 PF03720 UDPG_MGDP_dh_C: UDP-g 23.9 92 0.002 24.6 3.2 28 20-47 10-39 (106)
439 PF14359 DUF4406: Domain of un 23.9 1.2E+02 0.0025 23.5 3.6 28 15-42 2-33 (92)
440 PF15092 UPF0728: Uncharacteri 23.9 1.9E+02 0.004 22.0 4.4 39 11-49 7-49 (88)
441 PRK14618 NAD(P)H-dependent gly 23.8 1.1E+02 0.0023 29.8 4.3 39 10-53 4-43 (328)
442 cd07766 DHQ_Fe-ADH Dehydroquin 23.8 1.7E+02 0.0036 28.5 5.7 96 267-388 12-114 (332)
443 PRK04946 hypothetical protein; 23.8 1E+02 0.0022 27.2 3.7 58 296-372 111-169 (181)
444 PRK06932 glycerate dehydrogena 23.4 2.9E+02 0.0063 26.8 7.2 63 278-370 147-209 (314)
445 PRK15454 ethanol dehydrogenase 23.3 1.2E+02 0.0027 30.4 4.7 45 267-313 38-82 (395)
446 PHA02518 ParA-like protein; Pr 23.3 1.6E+02 0.0034 26.1 5.1 36 12-47 2-38 (211)
447 PF01497 Peripla_BP_2: Peripla 23.1 1.1E+02 0.0025 27.6 4.2 33 111-143 59-93 (238)
448 TIGR01662 HAD-SF-IIIA HAD-supe 23.1 4E+02 0.0087 21.4 8.8 88 27-139 30-130 (132)
449 COG4635 HemG Flavodoxin [Energ 23.0 1.5E+02 0.0031 25.6 4.2 35 11-45 1-36 (175)
450 PRK07710 acetolactate synthase 23.0 2.6E+02 0.0057 29.6 7.4 27 357-385 79-111 (571)
451 PF00148 Oxidored_nitro: Nitro 23.0 4.9E+02 0.011 25.9 9.1 27 111-140 340-366 (398)
452 PRK06835 DNA replication prote 22.9 1.3E+02 0.0029 29.4 4.7 43 11-53 184-226 (329)
453 COG1454 EutG Alcohol dehydroge 22.9 2.2E+02 0.0047 28.4 6.2 45 267-313 18-62 (377)
454 PF13419 HAD_2: Haloacid dehal 22.9 1.5E+02 0.0033 24.8 4.8 88 27-139 82-176 (176)
455 cd05017 SIS_PGI_PMI_1 The memb 22.9 2.5E+02 0.0053 22.5 5.7 56 14-73 46-101 (119)
456 PF01656 CbiA: CobQ/CobB/MinD/ 22.9 1.3E+02 0.0029 26.1 4.5 34 14-47 2-36 (195)
457 TIGR00853 pts-lac PTS system, 22.9 2.2E+02 0.0048 22.0 5.1 38 9-46 2-39 (95)
458 PRK14494 putative molybdopteri 22.8 1.5E+02 0.0032 27.3 4.7 35 11-45 1-36 (229)
459 PLN02948 phosphoribosylaminoim 22.8 9.4E+02 0.02 25.6 13.6 144 279-451 410-562 (577)
460 cd02033 BchX Chlorophyllide re 22.8 1.8E+02 0.0039 28.4 5.6 37 11-47 32-68 (329)
461 cd08181 PPD-like 1,3-propanedi 22.7 1.4E+02 0.003 29.6 4.8 45 267-313 15-59 (357)
462 TIGR03453 partition_RepA plasm 22.7 1.6E+02 0.0034 29.5 5.3 39 9-47 102-142 (387)
463 PRK11199 tyrA bifunctional cho 22.6 7.7E+02 0.017 24.5 10.5 34 9-47 97-131 (374)
464 PRK05708 2-dehydropantoate 2-r 22.5 1.4E+02 0.0031 28.7 4.9 39 10-53 2-41 (305)
465 cd08551 Fe-ADH iron-containing 22.5 1.5E+02 0.0032 29.5 5.1 46 267-314 12-57 (370)
466 PRK04148 hypothetical protein; 22.5 1.8E+02 0.0038 24.3 4.6 39 9-53 16-55 (134)
467 COG0569 TrkA K+ transport syst 22.4 1.1E+02 0.0023 28.1 3.7 32 11-47 1-32 (225)
468 TIGR02370 pyl_corrinoid methyl 22.4 4.6E+02 0.01 23.3 7.8 62 235-318 112-175 (197)
469 TIGR03877 thermo_KaiC_1 KaiC d 22.4 3.6E+02 0.0079 24.6 7.4 48 6-53 17-64 (237)
470 TIGR00173 menD 2-succinyl-5-en 22.2 3.9E+02 0.0086 27.1 8.2 27 357-385 64-96 (432)
471 TIGR01449 PGP_bact 2-phosphogl 22.2 4.5E+02 0.0097 23.1 7.9 93 27-141 90-186 (213)
472 PRK12361 hypothetical protein; 22.2 2.9E+02 0.0062 29.1 7.4 29 357-387 298-330 (547)
473 PRK05920 aromatic acid decarbo 22.2 4.5E+02 0.0097 23.7 7.6 32 373-405 125-160 (204)
474 cd02070 corrinoid_protein_B12- 22.1 5E+02 0.011 23.1 8.0 62 235-318 110-173 (201)
475 TIGR01918 various_sel_PB selen 22.0 1.8E+02 0.004 29.3 5.4 46 362-409 348-395 (431)
476 COG1893 ApbA Ketopantoate redu 21.9 1.1E+02 0.0024 29.5 3.9 50 11-70 1-50 (307)
477 TIGR01917 gly_red_sel_B glycin 21.9 1.8E+02 0.004 29.3 5.4 42 95-139 62-113 (431)
478 KOG3062 RNA polymerase II elon 21.9 1.7E+02 0.0036 27.0 4.6 32 13-44 4-36 (281)
479 TIGR02690 resist_ArsH arsenica 21.8 2.4E+02 0.0052 25.8 5.8 43 3-45 19-64 (219)
480 PRK09271 flavodoxin; Provision 21.8 1.7E+02 0.0037 25.0 4.7 35 11-45 1-36 (160)
481 KOG3022 Predicted ATPase, nucl 21.8 6.1E+02 0.013 24.2 8.4 36 12-47 49-85 (300)
482 TIGR01380 glut_syn glutathione 21.7 1.1E+02 0.0024 29.6 3.9 43 11-53 1-46 (312)
483 TIGR03200 dearomat_oah 6-oxocy 21.6 5.7E+02 0.012 25.4 8.7 136 298-447 114-257 (360)
484 PF00551 Formyl_trans_N: Formy 21.6 1.6E+02 0.0036 25.7 4.7 104 11-142 1-110 (181)
485 cd00861 ProRS_anticodon_short 21.5 1.7E+02 0.0038 21.9 4.3 55 12-68 3-60 (94)
486 TIGR00064 ftsY signal recognit 21.5 2E+02 0.0044 27.2 5.5 38 12-49 74-111 (272)
487 TIGR01278 DPOR_BchB light-inde 21.5 1.5E+02 0.0032 31.1 5.0 28 111-141 363-390 (511)
488 PLN02880 tyrosine decarboxylas 21.5 1.4E+02 0.003 31.1 4.7 70 359-428 147-234 (490)
489 cd01147 HemV-2 Metal binding p 21.4 1.3E+02 0.0028 27.8 4.3 37 102-141 67-106 (262)
490 PRK13236 nitrogenase reductase 21.4 1.5E+02 0.0034 28.3 4.8 35 11-45 6-41 (296)
491 TIGR03371 cellulose_yhjQ cellu 21.4 1.4E+02 0.0029 27.4 4.3 36 13-48 4-40 (246)
492 PRK02910 light-independent pro 21.3 1.4E+02 0.0031 31.2 4.9 27 111-140 361-387 (519)
493 PRK06756 flavodoxin; Provision 21.3 1.7E+02 0.0037 24.4 4.6 36 11-46 2-38 (148)
494 PRK15438 erythronate-4-phospha 21.3 3.5E+02 0.0076 27.1 7.3 62 278-368 116-177 (378)
495 COG1737 RpiR Transcriptional r 21.3 2.9E+02 0.0063 26.2 6.6 92 267-391 121-217 (281)
496 TIGR00460 fmt methionyl-tRNA f 21.2 1.2E+02 0.0025 29.5 3.9 32 11-47 1-32 (313)
497 PLN02240 UDP-glucose 4-epimera 21.2 1.5E+02 0.0032 28.8 4.8 33 10-46 5-37 (352)
498 TIGR03018 pepcterm_TyrKin exop 21.2 2.1E+02 0.0046 25.5 5.5 38 10-47 34-74 (207)
499 PF12695 Abhydrolase_5: Alpha/ 21.2 1.8E+02 0.0039 23.5 4.7 32 14-45 2-33 (145)
500 COG1192 Soj ATPases involved i 21.1 1.5E+02 0.0032 27.6 4.5 38 11-48 2-42 (259)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.5e-64 Score=505.55 Aligned_cols=433 Identities=28% Similarity=0.467 Sum_probs=338.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
+++||+++|++++||++|++.||+.|+.+|+.|||++++.+.... .. .. .+++|..+|+++++........ ..++.
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~-~~-~~-~~i~~~~ip~glp~~~~~~~~~-~~~~~ 81 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP-SD-DF-TDFQFVTIPESLPESDFKNLGP-IEFLH 81 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc-cc-CC-CCeEEEeCCCCCCcccccccCH-HHHHH
Confidence 677999999999999999999999999999999999998654221 11 00 4699999999887642122222 44555
Q ss_pred HHHHHhHHHHHHHHHhhhh-cCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccC-C--ccccc
Q 041902 89 EFKRRSSEALTEIITGSEN-QGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYG-D--LIEEK 164 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~-~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~-~--~p~~~ 164 (470)
.+...+...+.++++.+.. .+ .++++||+|.+.+|+..+|+++|||++.|++++++.+...++...... . .|...
T Consensus 82 ~~~~~~~~~~~~~L~~l~~~~~-~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (451)
T PLN02410 82 KLNKECQVSFKDCLGQLVLQQG-NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKE 160 (451)
T ss_pred HHHHHhHHHHHHHHHHHHhccC-CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccc
Confidence 5555667778888877642 23 467999999999999999999999999999999988877665432111 0 11111
Q ss_pred --cCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc---CCCee
Q 041902 165 --VNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID---KFNMI 239 (470)
Q Consensus 165 --~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~---~~~~~ 239 (470)
..+...+|++|+++..+++..... . .......+.... ...++ +.+++|||.+||+.+.+++. +.+++
T Consensus 161 ~~~~~~~~iPg~~~~~~~dlp~~~~~----~-~~~~~~~~~~~~-~~~~~--~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 232 (451)
T PLN02410 161 PKGQQNELVPEFHPLRCKDFPVSHWA----S-LESIMELYRNTV-DKRTA--SSVIINTASCLESSSLSRLQQQLQIPVY 232 (451)
T ss_pred cccCccccCCCCCCCChHHCcchhcC----C-cHHHHHHHHHHh-hcccC--CEEEEeChHHhhHHHHHHHHhccCCCEE
Confidence 112345888887777777654321 1 111222222221 23455 89999999999999988886 35799
Q ss_pred EeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCC
Q 041902 240 AIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHE 319 (470)
Q Consensus 240 ~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 319 (470)
+|||+......+ ..+++. + .++.+||+.+++++||||||||....+.+++.++..+|+.++.+|+|+++.+
T Consensus 233 ~vGpl~~~~~~~------~~~~~~-~-~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~- 303 (451)
T PLN02410 233 PIGPLHLVASAP------TSLLEE-N-KSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG- 303 (451)
T ss_pred EecccccccCCC------cccccc-c-hHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC-
Confidence 999997542100 111221 2 5789999999999999999999999999999999999999999999999854
Q ss_pred CCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHh
Q 041902 320 NKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVD 399 (470)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~ 399 (470)
.....+..+.+|++|++++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++
T Consensus 304 ~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~ 383 (451)
T PLN02410 304 SVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLEC 383 (451)
T ss_pred cccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHH
Confidence 21101011147999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 400 FCKTGVRVKANEEGILESDEIKRCLELVMGEGD---EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 400 ~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~---~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
.+|+|+.+. ..+++++|.++|+++|. ++ +||++|+++++.+++++.+||||+.++++|++.|..
T Consensus 384 ~~~~G~~~~----~~~~~~~v~~av~~lm~-~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 384 VWKIGIQVE----GDLDRGAVERAVKRLMV-EEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HhCeeEEeC----CcccHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 359999997 47899999999999998 54 799999999999999999999999999999999864
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=4e-64 Score=506.86 Aligned_cols=455 Identities=37% Similarity=0.669 Sum_probs=350.6
Q ss_pred CccccccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcC--CC-C---CCC---CceEEEcCCC
Q 041902 1 MEQEQHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMAN--SP-T---PED---GLSFASFSDG 71 (470)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~--~~-~---~~~---g~~~~~i~~~ 71 (470)
|+++.+ +.||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.. .. . ... .++|..+|++
T Consensus 1 ~~~~~~---~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdg 77 (480)
T PLN02555 1 MESESS---LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDG 77 (480)
T ss_pred CCCCCC---CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCC
Confidence 566544 3699999999999999999999999999999999999976655411 10 0 001 2566668888
Q ss_pred CCCCCCCCCCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHH
Q 041902 72 YDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYY 151 (470)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~ 151 (470)
+++..+...+. ..++..+...+.+.++++++.+..++ .++++||+|.++.|+..+|+++|||++.|++++++.+..++
T Consensus 78 lp~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~-~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~ 155 (480)
T PLN02555 78 WAEDDPRRQDL-DLYLPQLELVGKREIPNLVKRYAEQG-RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYY 155 (480)
T ss_pred CCCCcccccCH-HHHHHHHHHhhhHHHHHHHHHHhccC-CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHH
Confidence 87654332233 34455555556778888887764333 34599999999999999999999999999999999998887
Q ss_pred HhhhccCCccccc-cCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHH
Q 041902 152 YYFYGYGDLIEEK-VNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETL 230 (470)
Q Consensus 152 ~~~~~~~~~p~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 230 (470)
+......+.+... ...+..+|++|.++..+++.++.. ...+......+.+.+....++ +.+++|||.+||+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~a--~~vlvNTf~eLE~~~~ 230 (480)
T PLN02555 156 HYYHGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHP---SSPYPFLRRAILGQYKNLDKP--FCILIDTFQELEKEII 230 (480)
T ss_pred HHhhcCCCcccccCCCceeecCCCCCcCHhhCcccccC---CCCchHHHHHHHHHHHhcccC--CEEEEEchHHHhHHHH
Confidence 7653321222111 012356899988888899877643 222334445555556555666 8999999999999988
Q ss_pred HHhc-CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Q 041902 231 RAID-KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH 309 (470)
Q Consensus 231 ~~~~-~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (470)
+.+. ..+++.|||++.....+. ...+...+.. + ++|.+||+++++++||||||||+...+.+++.+++.+++..+.
T Consensus 231 ~~l~~~~~v~~iGPl~~~~~~~~-~~~~~~~~~~-~-~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~ 307 (480)
T PLN02555 231 DYMSKLCPIKPVGPLFKMAKTPN-SDVKGDISKP-A-DDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGV 307 (480)
T ss_pred HHHhhCCCEEEeCcccCcccccc-cccccccccc-c-hhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCC
Confidence 8875 336999999976421110 1111122222 2 6899999999888999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccch
Q 041902 310 PFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTD 389 (470)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~D 389 (470)
+|||+++.. ....+.....+|+++.+++++|+++++|+||.+||.|+++++|||||||||++||+++|||||++|++.|
T Consensus 308 ~flW~~~~~-~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~D 386 (480)
T PLN02555 308 SFLWVMRPP-HKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGD 386 (480)
T ss_pred eEEEEEecC-cccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccc
Confidence 999998743 1110000115788888888999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceeEeeecC--CCCcCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 390 QGTNAKIIVDFCKTGVRVKANE--EGILESDEIKRCLELVMGE--GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 390 Q~~nA~rl~~~~GvG~~l~~~~--~~~~~~~~l~~~i~~vl~~--~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
|+.||+++++++|+|+.+..++ ...++.++|.++|+++|.+ +.++|+||++|+++.++++.+||||+.++++||++
T Consensus 387 Q~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~ 466 (480)
T PLN02555 387 QVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDK 466 (480)
T ss_pred cHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999999998569999994211 2468999999999999972 24899999999999999999999999999999999
Q ss_pred hhcC
Q 041902 466 FGTS 469 (470)
Q Consensus 466 l~~~ 469 (470)
|...
T Consensus 467 i~~~ 470 (480)
T PLN02555 467 LVRK 470 (480)
T ss_pred HHhc
Confidence 8764
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.2e-63 Score=497.42 Aligned_cols=433 Identities=35% Similarity=0.644 Sum_probs=339.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCC-CCCCCCchhhH
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGF-NSKQNDPRRYV 87 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~ 87 (470)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+ ..... .+++++.+|+++++.. +...+. ..++
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~-~~~~~-~~i~~~~ipdglp~~~~~~~~~~-~~~~ 80 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTI-HLDPS-SPISIATISDGYDQGGFSSAGSV-PEYL 80 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhc-ccCCC-CCEEEEEcCCCCCCcccccccCH-HHHH
Confidence 346999999999999999999999999999999999999776655 32111 4699999999888732 333233 4556
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCC
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVND 167 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 167 (470)
..+...+.+.++++++.+..++ .+.++||+|.+.+|+..+|+++|||++.|++++++.+..+++...... ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~-~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~-------~~ 152 (449)
T PLN02173 81 QNFKTFGSKTVADIIRKHQSTD-NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNG-------SL 152 (449)
T ss_pred HHHHHhhhHHHHHHHHHhhccC-CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccC-------Cc
Confidence 6666567888888887764322 233999999999999999999999999999998877765554321110 11
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-CCCeeEeccccC
Q 041902 168 LIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-KFNMIAIGPLVA 246 (470)
Q Consensus 168 ~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~vGpl~~ 246 (470)
...+|++|.++..+++.++.. ..........+.+.+....++ +.+++||+.+||+...+.+. ..+++.|||+++
T Consensus 153 ~~~~pg~p~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~~~~v~~VGPl~~ 227 (449)
T PLN02173 153 TLPIKDLPLLELQDLPTFVTP---TGSHLAYFEMVLQQFTNFDKA--DFVLVNSFHDLDLHENELLSKVCPVLTIGPTVP 227 (449)
T ss_pred cCCCCCCCCCChhhCChhhcC---CCCchHHHHHHHHHHhhhccC--CEEEEeCHHHhhHHHHHHHHhcCCeeEEcccCc
Confidence 344889988888888876643 111222334344555556666 89999999999999888886 347999999975
Q ss_pred CCc----cCCcccCCCCCCC-CCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCC
Q 041902 247 SAL----WDGKELYGGDLCK-NSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENK 321 (470)
Q Consensus 247 ~~~----~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 321 (470)
... .......+.+++. . ..+.|.+||+.+++++||||||||+...+.+++.+++.+| .+.+|+|+++.. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~-~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~-~~ 303 (449)
T PLN02173 228 SMYLDQQIKSDNDYDLNLFDLK-EAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS-EE 303 (449)
T ss_pred hhhccccccccccccccccccc-cchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc-ch
Confidence 310 0001111122321 1 1156999999999999999999999999999999999999 778999999854 32
Q ss_pred CCCCCchhhhHHHHHHh-CCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhh
Q 041902 322 DKDKGEDDVVMKYKEEL-NEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDF 400 (470)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~ 400 (470)
. .+|+++.+++ ++|+++++|+||.+||+|+++++|||||||||++||+.+|||||++|++.||+.||+++++.
T Consensus 304 ~------~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~ 377 (449)
T PLN02173 304 S------KLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDV 377 (449)
T ss_pred h------cccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHH
Confidence 3 6788888787 58899999999999999999999999999999999999999999999999999999999974
Q ss_pred hcceeEeeecC-CCCcCHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 401 CKTGVRVKANE-EGILESDEIKRCLELVMGEG--DEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 401 ~GvG~~l~~~~-~~~~~~~~l~~~i~~vl~~~--~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
+|+|+.+..++ .+.++.++|.++|+++|.++ .++|++|++++++.++++.+||||.+++++|++.|.
T Consensus 378 ~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 378 WKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred hCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 59999997522 12369999999999999722 479999999999999999999999999999999874
No 4
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-62 Score=496.64 Aligned_cols=435 Identities=37% Similarity=0.660 Sum_probs=334.1
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCccchhhhcCCCCCC-CCceEEEcCCCCCCCCCCCCCCc
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARR--LIRIGTRVTFATTIFAYRRMANSPTPE-DGLSFASFSDGYDDGFNSKQNDP 83 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~--L~~~Gh~V~~~~~~~~~~~v~~~~~~~-~g~~~~~i~~~~~~~~~~~~~~~ 83 (470)
..++.||+++|+|++||++|++.||++ |+++|++|||++++.+.+.+ +..+.+ ..+++..+|+++++... .+.
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~-~~~~~~~~~~~~~~~~~glp~~~~--~~~- 80 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLL-STVEKPRRPVDLVFFSDGLPKDDP--RAP- 80 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhh-ccccCCCCceEEEECCCCCCCCcc--cCH-
Confidence 455689999999999999999999999 56999999999999887776 543211 35777778888876542 222
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCcccc
Q 041902 84 RRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEE 163 (470)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (470)
..++..+...+.+.+.++++. .+||+||+|.+++|+..+|+++|||++.|++.+++.+...++.+......+..
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~ 154 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDL 154 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcc
Confidence 344444544555555555543 46999999999999999999999999999999998888877654322222211
Q ss_pred cc-CCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-CCCeeEe
Q 041902 164 KV-NDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-KFNMIAI 241 (470)
Q Consensus 164 ~~-~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~v 241 (470)
.. .+...+|+++.++..+++..+... .. ......+.+..+....+ +.+++||+.+||+...+.+. .+++++|
T Consensus 155 ~~~~~~~~~Pgl~~~~~~dl~~~~~~~--~~--~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~l~~~~~v~~V 228 (456)
T PLN02210 155 EDLNQTVELPALPLLEVRDLPSFMLPS--GG--AHFNNLMAEFADCLRYV--KWVLVNSFYELESEIIESMADLKPVIPI 228 (456)
T ss_pred cccCCeeeCCCCCCCChhhCChhhhcC--Cc--hHHHHHHHHHHHhcccC--CEEEEeCHHHHhHHHHHHHhhcCCEEEE
Confidence 10 123458888877778887655431 11 11222223443444555 89999999999998888765 3479999
Q ss_pred ccccCCCc---cCCc--ccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Q 041902 242 GPLVASAL---WDGK--ELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIR 316 (470)
Q Consensus 242 Gpl~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 316 (470)
||+++... .... ......++.+ + ++|.+|++.+++++||||||||....+.+++++++.+|+.++.+|||+++
T Consensus 229 GPl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~ 306 (456)
T PLN02210 229 GPLVSPFLLGDDEEETLDGKNLDMCKS-D-DCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIR 306 (456)
T ss_pred cccCchhhcCccccccccccccccccc-c-hHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 99985310 0000 1111122332 3 68999999998899999999999988999999999999999999999997
Q ss_pred cCCCCCCCCCchhhhHHHHHHh-CCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHH
Q 041902 317 EHENKDKDKGEDDVVMKYKEEL-NEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAK 395 (470)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~-~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~ 395 (470)
.. ... ..+..+.+++ ++++++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 307 ~~-~~~------~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~ 379 (456)
T PLN02210 307 PK-EKA------QNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDAR 379 (456)
T ss_pred CC-ccc------cchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHH
Confidence 54 222 2344566666 488888899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcceeEeeecC-CCCcCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 396 IIVDFCKTGVRVKANE-EGILESDEIKRCLELVMGEGD---EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 396 rl~~~~GvG~~l~~~~-~~~~~~~~l~~~i~~vl~~~~---~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
++++++|+|+.+...+ .+.++.++|.++|+++|. ++ ++|+||+++++..++++.+||||+.++++|++.|.
T Consensus 380 ~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~-~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 380 LLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTE-GPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9986589999996421 246899999999999998 55 59999999999999999999999999999999875
No 5
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.9e-62 Score=491.55 Aligned_cols=441 Identities=52% Similarity=0.904 Sum_probs=340.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccc-hhhhcCCCCCCCCceEEEcCCCCCCCCCC-CCCCchh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIR-IGTRVTFATTIFA-YRRMANSPTPEDGLSFASFSDGYDDGFNS-KQNDPRR 85 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~-~Gh~V~~~~~~~~-~~~v~~~~~~~~g~~~~~i~~~~~~~~~~-~~~~~~~ 85 (470)
++.|++++|+|++||++|++.||+.|+. +|+.|||++++.+ .+.+........+++|+.+++++++.... ..+. ..
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~-~~ 80 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDV-QN 80 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccH-HH
Confidence 4569999999999999999999999996 6999999999853 23221221100369999999888775432 2223 44
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCcccccc
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKV 165 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 165 (470)
.+......+.+.+.++++.+...+ .++++||+|.+.+|+..+|+++|||++.|++++++.+..+++.+...
T Consensus 81 ~~~~~~~~~~~~l~~~l~~l~~~~-~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~-------- 151 (455)
T PLN02152 81 RLVNFERNGDKALSDFIEANLNGD-SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN-------- 151 (455)
T ss_pred HHHHHHHhccHHHHHHHHHhhccC-CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--------
Confidence 555566677888888888764333 34699999999999999999999999999999999888887665311
Q ss_pred CCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEecccc
Q 041902 166 NDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLV 245 (470)
Q Consensus 166 ~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~ 245 (470)
.....+|++|.++..+++.++.. ......+...+.+..+.......+.+++|||.+||+...+.+...+++.|||+.
T Consensus 152 ~~~~~iPglp~l~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~v~~VGPL~ 228 (455)
T PLN02152 152 NSVFEFPNLPSLEIRDLPSFLSP---SNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPNIEMVAVGPLL 228 (455)
T ss_pred CCeeecCCCCCCchHHCchhhcC---CCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhcCCEEEEcccC
Confidence 01345899988888888887643 122222334455555554432116899999999999988888644799999997
Q ss_pred CCCccCCcc-cCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCC-
Q 041902 246 ASALWDGKE-LYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDK- 323 (470)
Q Consensus 246 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~- 323 (470)
+....+... ......+.. + .++.+||+.+++++||||||||+...+.+++++++.+|+.++.+|||+++.. ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~-~-~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~-~~~~~ 305 (455)
T PLN02152 229 PAEIFTGSESGKDLSVRDQ-S-SSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK-LNREA 305 (455)
T ss_pred ccccccccccCcccccccc-c-hHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC-ccccc
Confidence 542101000 000011121 2 5899999999888999999999999999999999999999999999999853 1100
Q ss_pred ---CCC--chhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHH
Q 041902 324 ---DKG--EDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIV 398 (470)
Q Consensus 324 ---~~~--~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~ 398 (470)
.+. ...+++++++++++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||++++
T Consensus 306 ~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~ 385 (455)
T PLN02152 306 KIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLE 385 (455)
T ss_pred ccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHH
Confidence 000 002367888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 399 DFCKTGVRVKANEEGILESDEIKRCLELVMGEGD--EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 399 ~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~--~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
+.+|+|+.+..+..+.++.++|.++|+++|. ++ +||++|++++++++++...||||++++++|++.|
T Consensus 386 ~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~-~~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 386 EIWKTGVRVRENSEGLVERGEIRRCLEAVME-EKSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHhCceEEeecCcCCcCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7558888875322235699999999999997 55 5999999999999999999999999999999986
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=2e-62 Score=494.27 Aligned_cols=430 Identities=27% Similarity=0.469 Sum_probs=334.4
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCC-CCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSP-TPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~-~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
+..+.||+++|+|++||++|++.||+.|+.+|++|||++++.+.+.+ ... ....+++|+.+|++++... ..+. ..
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~-~~~~~~~~~i~~v~lp~g~~~~~--~~~~-~~ 78 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRI-SATLDPKLGITFMSISDGQDDDP--PRDF-FS 78 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhh-hhccCCCCCEEEEECCCCCCCCc--cccH-HH
Confidence 66678999999999999999999999999999999999999877666 331 1003799999998765321 1122 33
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCC--cccc
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGD--LIEE 163 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~--~p~~ 163 (470)
+...+...+.+.+.++++.+... .++++||+|.+..|+..+|+++|||++.|++++++.+...++.+..... .+..
T Consensus 79 l~~a~~~~~~~~l~~ll~~l~~~--~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 156 (448)
T PLN02562 79 IENSMENTMPPQLERLLHKLDED--GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET 156 (448)
T ss_pred HHHHHHHhchHHHHHHHHHhcCC--CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc
Confidence 34444445777888888776432 2458999999999999999999999999999999877776654321100 1110
Q ss_pred --cc-CCc-ccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-----
Q 041902 164 --KV-NDL-IELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID----- 234 (470)
Q Consensus 164 --~~-~~~-~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----- 234 (470)
.. .++ ..+|++|.++..+++.++... .........+.+.++...++ +.+++|||.+||+...+.+.
T Consensus 157 ~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~~~~~ 231 (448)
T PLN02562 157 GCPRQLEKICVLPEQPLLSTEDLPWLIGTP---KARKARFKFWTRTLERTKSL--RWILMNSFKDEEYDDVKNHQASYNN 231 (448)
T ss_pred cccccccccccCCCCCCCChhhCcchhcCC---CcchHHHHHHHHHHhccccC--CEEEEcChhhhCHHHHHHHHhhhcc
Confidence 00 112 257888888888888765431 11122334555555555666 89999999999997766543
Q ss_pred --CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccc-cCCHHHHHHHHHHHHhCCCCE
Q 041902 235 --KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTIC-VLEKRQVEEIARGLLDSGHPF 311 (470)
Q Consensus 235 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~-~~~~~~~~~~~~al~~~~~~~ 311 (470)
.++++.|||+...... .......+.. + .+|.+||+.+++++||||||||+. ..+.+++++++.+|+.++.+|
T Consensus 232 ~~~~~v~~iGpl~~~~~~---~~~~~~~~~~-~-~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~f 306 (448)
T PLN02562 232 GQNPQILQIGPLHNQEAT---TITKPSFWEE-D-MSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPF 306 (448)
T ss_pred ccCCCEEEecCccccccc---ccCCCccccc-h-HHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCE
Confidence 2369999999864210 0001111121 2 578899999988899999999976 678899999999999999999
Q ss_pred EEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhh
Q 041902 312 LWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQG 391 (470)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~ 391 (470)
||+++.+ ..+ .+|+++++++++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 307 iW~~~~~-~~~------~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 379 (448)
T PLN02562 307 IWVLNPV-WRE------GLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQF 379 (448)
T ss_pred EEEEcCC-chh------hCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchH
Confidence 9999764 323 678889889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 392 TNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 392 ~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
.||+++++.+|+|+.+. +++.++|.++|+++|. +++||+||++++++++++ +.||||+.++++|++.|
T Consensus 380 ~na~~~~~~~g~g~~~~-----~~~~~~l~~~v~~~l~-~~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 380 VNCAYIVDVWKIGVRIS-----GFGQKEVEEGLRKVME-DSGMGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred HHHHHHHHHhCceeEeC-----CCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 99999986368888874 4799999999999999 999999999999999876 66799999999999986
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.7e-62 Score=493.44 Aligned_cols=450 Identities=27% Similarity=0.416 Sum_probs=334.8
Q ss_pred cccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCC-CCceEEEcC----CCCCCCCCCC
Q 041902 5 QHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE-DGLSFASFS----DGYDDGFNSK 79 (470)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~-~g~~~~~i~----~~~~~~~~~~ 79 (470)
.+...++||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++ ...... .+++++.+| .+++++.++.
T Consensus 4 ~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~-~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~ 82 (477)
T PLN02863 4 LNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFL-NPLLSKHPSIETLVLPFPSHPSIPSGVENV 82 (477)
T ss_pred cccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHH-hhhcccCCCeeEEeCCCCCcCCCCCCCcCh
Confidence 3456778999999999999999999999999999999999999887766 432100 357777654 2555555443
Q ss_pred CCCchhhHHHHHH---HhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhc
Q 041902 80 QNDPRRYVSEFKR---RSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYG 156 (470)
Q Consensus 80 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~ 156 (470)
.+.....+..+.. .+...+.++++.. + .+|++||+|.+.+|+..+|+++|||++.|++++++.+..+++.+..
T Consensus 83 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~-~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~ 158 (477)
T PLN02863 83 KDLPPSGFPLMIHALGELYAPLLSWFRSH---P-SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE 158 (477)
T ss_pred hhcchhhHHHHHHHHHHhHHHHHHHHHhC---C-CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc
Confidence 3321222223333 3344444444432 2 4679999999999999999999999999999999999998887642
Q ss_pred cCCccc-ccc-CCc---ccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHH
Q 041902 157 YGDLIE-EKV-NDL---IELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLR 231 (470)
Q Consensus 157 ~~~~p~-~~~-~~~---~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 231 (470)
. +... ... .+. ..+|+++.++..+++.++... .........+.+.+.....+ +.+++|||.+||+...+
T Consensus 159 ~-~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~ 232 (477)
T PLN02863 159 M-PTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSY---VEGDPAWEFIKDSFRANIAS--WGLVVNSFTELEGIYLE 232 (477)
T ss_pred c-cccccccccccccccCCCCCCCCcChHhCchhhhcc---CccchHHHHHHHHHhhhccC--CEEEEecHHHHHHHHHH
Confidence 1 1110 000 111 137888888888888765431 11112223333444433444 77999999999999998
Q ss_pred Hhc---C-CCeeEeccccCCCccCC-cccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh
Q 041902 232 AID---K-FNMIAIGPLVASALWDG-KELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD 306 (470)
Q Consensus 232 ~~~---~-~~~~~vGpl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~ 306 (470)
.+. + .+++.|||++....... ....+.+... ..+++..||+.+++++||||||||+...+.+++.+++.+|+.
T Consensus 233 ~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~--~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~ 310 (477)
T PLN02863 233 HLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSV--SVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEK 310 (477)
T ss_pred HHHhhcCCCCeEEeCCCcccccccccccccCCcccc--cHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHh
Confidence 886 2 47999999986421100 0011111111 126899999999999999999999998899999999999999
Q ss_pred CCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCC-CeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeecc
Q 041902 307 SGHPFLWVIREHENKDKDKGEDDVVMKYKEELNE-KGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFP 385 (470)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P 385 (470)
++.+|||+++.. ... ......+|.++.+++.+ ++++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 311 ~~~~flw~~~~~-~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 311 SGVHFIWCVKEP-VNE-ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred CCCcEEEEECCC-ccc-ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCC
Confidence 999999999743 211 00112578888777754 445559999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 386 QWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 386 ~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
++.||+.||+++++.+|+|+++..+.....+.+++.++++++|.++++||+||+++++.+++++.+||||++++++|++.
T Consensus 389 ~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~ 468 (477)
T PLN02863 389 MAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKH 468 (477)
T ss_pred ccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 99999999999765489999995422234689999999999994388999999999999999999999999999999999
Q ss_pred hhcC
Q 041902 466 FGTS 469 (470)
Q Consensus 466 l~~~ 469 (470)
|.++
T Consensus 469 i~~~ 472 (477)
T PLN02863 469 VVEL 472 (477)
T ss_pred HHHh
Confidence 8754
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=7.6e-61 Score=480.89 Aligned_cols=440 Identities=26% Similarity=0.446 Sum_probs=331.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccch-h----hhcCCCCCC-CCceEEEcCCCCC-CCCCCC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIG--TRVTFATTIFAY-R----RMANSPTPE-DGLSFASFSDGYD-DGFNSK 79 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~G--h~V~~~~~~~~~-~----~v~~~~~~~-~g~~~~~i~~~~~-~~~~~~ 79 (470)
++.|++++|+|++||++|++.||+.|+.+| ..|||++++... . .+ ...... .+++|..+|+... +.....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYV-KSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhh-hhccCCCCCeEEEEeCCCCCCCccccc
Confidence 557999999999999999999999999998 999999888654 1 12 211000 4699999996432 110111
Q ss_pred CCCchhhHHHHHHHhH----HHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhh
Q 041902 80 QNDPRRYVSEFKRRSS----EALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFY 155 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~ 155 (470)
.+. ...+..+...+. +.+.++++....++ .++++||+|.+.+|+..+|+++|||++.|++++++.+....+.+.
T Consensus 81 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 81 QSV-EAYVYDVIEKNIPLVRNIVMDILSSLALDG-VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cCH-HHHHHHHHHhcchhHHHHHHHHHHHhccCC-CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 223 323333333443 33444444332222 234999999999999999999999999999999988887776643
Q ss_pred ccCCc---cccccCCcccCCCC-CCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHH
Q 041902 156 GYGDL---IEEKVNDLIELPGL-PPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLR 231 (470)
Q Consensus 156 ~~~~~---p~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 231 (470)
..... +.+....++.+|++ |.++..+++.++.. ...+ ..+.+......++ +.+++||+.+||++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~---~~~~----~~~~~~~~~~~~~--~~vlvNtf~~LE~~~~~ 229 (468)
T PLN02207 159 RHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFV---EDGY----DAYVKLAILFTKA--NGILVNSSFDIEPYSVN 229 (468)
T ss_pred ccccccccCcCCCCCeEECCCCCCCCChHHCcchhcC---CccH----HHHHHHHHhcccC--CEEEEEchHHHhHHHHH
Confidence 22111 00000123568998 67888888876643 1212 2334444455566 89999999999998777
Q ss_pred Hhc---C-CCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhC
Q 041902 232 AID---K-FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDS 307 (470)
Q Consensus 232 ~~~---~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~ 307 (470)
.+. . ++++.|||+......+... .... ..+++.+||+++++++||||||||....+.+++++++.+|+.+
T Consensus 230 ~~~~~~~~p~v~~VGPl~~~~~~~~~~---~~~~---~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~ 303 (468)
T PLN02207 230 HFLDEQNYPSVYAVGPIFDLKAQPHPE---QDLA---RRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELC 303 (468)
T ss_pred HHHhccCCCcEEEecCCcccccCCCCc---cccc---hhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHC
Confidence 763 2 3599999998642111000 0111 1267999999998899999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeecccc
Q 041902 308 GHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQW 387 (470)
Q Consensus 308 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~ 387 (470)
+++|||+++.. ... ..+.+|+++++++++|+.+++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 304 ~~~flW~~r~~-~~~---~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 304 QYRFLWSLRTE-EVT---NDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred CCcEEEEEeCC-Ccc---ccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 99999999853 211 01168899999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhhcceeEeeecC----CCCcCHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 041902 388 TDQGTNAKIIVDFCKTGVRVKANE----EGILESDEIKRCLELVMGE-GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAF 462 (470)
Q Consensus 388 ~DQ~~nA~rl~~~~GvG~~l~~~~----~~~~~~~~l~~~i~~vl~~-~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (470)
+||+.||+++++++|+|+.+..+. .+.++.++|.++|+++|.+ +++||+||+++++.+++++.+||||+.++++|
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~ 459 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRATKNGGSSFAAIEKF 459 (468)
T ss_pred ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999998776689999874210 1346999999999999962 56999999999999999999999999999999
Q ss_pred HHHhhcCC
Q 041902 463 VDDFGTSK 470 (470)
Q Consensus 463 ~~~l~~~~ 470 (470)
++++..-|
T Consensus 460 v~~~~~~~ 467 (468)
T PLN02207 460 IHDVIGIK 467 (468)
T ss_pred HHHHHhcc
Confidence 99987654
No 9
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-60 Score=485.64 Aligned_cols=435 Identities=25% Similarity=0.407 Sum_probs=328.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchhhh------cCCCCC--CCCceEEEcCCCCCCCCCCC
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIG--TRVTFATTIFAYRRM------ANSPTP--EDGLSFASFSDGYDDGFNSK 79 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~G--h~V~~~~~~~~~~~v------~~~~~~--~~g~~~~~i~~~~~~~~~~~ 79 (470)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+ ..+... ..+++++.+|++.++..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~--- 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTT--- 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCcc---
Confidence 68999999999999999999999999998 889999988653321 011110 04699999987654221
Q ss_pred CCCchhhHHHHHHHhHHHHHHHHHhhhh-----cCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhh
Q 041902 80 QNDPRRYVSEFKRRSSEALTEIITGSEN-----QGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYF 154 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~ 154 (470)
.. . .+..+...+...+.+.++.+.. ++ .+.++||+|.+++|+..+|+++|||++.|++++++.++..++.+
T Consensus 79 -~~-~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~ 154 (481)
T PLN02554 79 -ED-P-TFQSYIDNQKPKVRDAVAKLVDDSSTPSS-PRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQ 154 (481)
T ss_pred -cc-h-HHHHHHHHHHHHHHHHHHHHHhhhccCCC-CCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhh
Confidence 11 1 1112223334444444444421 11 22389999999999999999999999999999999999888775
Q ss_pred hccCC--cccc--cc-CCcccCCCCC-CCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHH
Q 041902 155 YGYGD--LIEE--KV-NDLIELPGLP-PLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAE 228 (470)
Q Consensus 155 ~~~~~--~p~~--~~-~~~~~~p~~~-~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 228 (470)
..... .+.+ .. .+++.+|+++ +++..+++..+.. . .....+.+......++ +.+++||+.+||+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~---~----~~~~~~~~~~~~~~~~--~gvlvNt~~eLe~~ 225 (481)
T PLN02554 155 MLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS---K----EWLPLFLAQARRFREM--KGILVNTVAELEPQ 225 (481)
T ss_pred hhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccC---H----HHHHHHHHHHHhcccC--CEEEEechHHHhHH
Confidence 42221 1101 01 1235588883 6777777765432 1 1234444555555666 89999999999998
Q ss_pred HHHHhc-----CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHH
Q 041902 229 TLRAID-----KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARG 303 (470)
Q Consensus 229 ~~~~~~-----~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a 303 (470)
....+. .++++.|||++...... ... . .+ .+.++.+|++++++++||||||||+...+.+++.+++.+
T Consensus 226 ~~~~l~~~~~~~~~v~~vGpl~~~~~~~-~~~---~--~~-~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~ 298 (481)
T PLN02554 226 ALKFFSGSSGDLPPVYPVGPVLHLENSG-DDS---K--DE-KQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIA 298 (481)
T ss_pred HHHHHHhcccCCCCEEEeCCCccccccc-ccc---c--cc-cchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHH
Confidence 888775 14699999995321110 000 0 01 236899999999888999999999988889999999999
Q ss_pred HHhCCCCEEEEEecCCCC-------CC-CCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhh
Q 041902 304 LLDSGHPFLWVIREHENK-------DK-DKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESL 375 (470)
Q Consensus 304 l~~~~~~~i~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal 375 (470)
|+.++.+|||+++.. .. ++ ....+.+|+++++++++|+++++|+||.+||.|+++++|||||||||++||+
T Consensus 299 l~~~~~~flW~~~~~-~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~ 377 (481)
T PLN02554 299 LERSGHRFLWSLRRA-SPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESL 377 (481)
T ss_pred HHHcCCCeEEEEcCC-cccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHH
Confidence 999999999999752 10 00 0001146889988999999999999999999999999999999999999999
Q ss_pred hcCCcEeeccccchhhHHHH-HHHhhhcceeEeeec--------CCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 041902 376 VCGVPVVAFPQWTDQGTNAK-IIVDFCKTGVRVKAN--------EEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAR 446 (470)
Q Consensus 376 ~~GvP~v~~P~~~DQ~~nA~-rl~~~~GvG~~l~~~--------~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~ 446 (470)
++|||||++|+++||+.||+ ++++ +|+|+.+..+ +...++.++|.++|+++|.++++||+||+++++.++
T Consensus 378 ~~GVP~l~~P~~~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~ 456 (481)
T PLN02554 378 WFGVPMAAWPLYAEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCH 456 (481)
T ss_pred HcCCCEEecCccccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999995 5776 9999998631 114689999999999999536899999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHhhcC
Q 041902 447 EAAKQGGSSYKNLKAFVDDFGTS 469 (470)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~l~~~ 469 (470)
+++.+|||+++++++|+++|.++
T Consensus 457 ~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 457 VALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHhcCCChHHHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 10
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.8e-60 Score=482.13 Aligned_cols=435 Identities=30% Similarity=0.523 Sum_probs=333.8
Q ss_pred cccCCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCC
Q 041902 5 QHRQHQPHFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQND 82 (470)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 82 (470)
...+.+.||+++|+|++||++|++.||++|+.+ ||+|||++++.+.+.+ +......|++|+++|+++++......+.
T Consensus 5 ~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i-~~~~~~~gi~fv~lp~~~p~~~~~~~~~ 83 (459)
T PLN02448 5 SSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLI-GSDPKPDNIRFATIPNVIPSELVRAADF 83 (459)
T ss_pred CCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHh-hccCCCCCEEEEECCCCCCCccccccCH
Confidence 345667899999999999999999999999999 9999999999988877 5411003899999998766543322233
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccC--Cc
Q 041902 83 PRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYG--DL 160 (470)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~--~~ 160 (470)
..++..+...+...+.++++.+. .++|+||+|.+++|+..+|+++|||++.++++++..+....+...... ..
T Consensus 84 -~~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 84 -PGFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred -HHHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 34455555456677777776653 358999999999999999999999999999999977777665532111 11
Q ss_pred cccc---cCCc-ccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc--
Q 041902 161 IEEK---VNDL-IELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-- 234 (470)
Q Consensus 161 p~~~---~~~~-~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-- 234 (470)
+.+. ..+. ..+|+++.+...+++.++.. . .......+.+.+....++ +.+++||+.+||+.+.+.++
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~---~--~~~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~l~~~ 231 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRLSDLPPIFHG---N--SRRVLKRILEAFSWVPKA--QYLLFTSFYELEAQAIDALKSK 231 (459)
T ss_pred CCccccccCCccccCCCCCCCChHHCchhhcC---C--chHHHHHHHHHHhhcccC--CEEEEccHHHhhHHHHHHHHhh
Confidence 1111 0111 13788877777777765543 1 112233444444444555 79999999999999888886
Q ss_pred -CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 235 -KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 235 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
..+++.|||+.+......... .... .+ ...++.+|++.++++++|||||||+...+.+++.+++.+|+..+.+|||
T Consensus 232 ~~~~~~~iGP~~~~~~~~~~~~-~~~~-~~-~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw 308 (459)
T PLN02448 232 FPFPVYPIGPSIPYMELKDNSS-SSNN-ED-NEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLW 308 (459)
T ss_pred cCCceEEecCcccccccCCCcc-cccc-cc-chhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 247999999986421110000 0000 01 1158999999998899999999999888889999999999999999999
Q ss_pred EEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHH
Q 041902 314 VIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTN 393 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~n 393 (470)
++... ..++.+..++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 309 ~~~~~------------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 309 VARGE------------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred EEcCc------------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 87532 113443455789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceeEeeecC--CCCcCHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 394 AKIIVDFCKTGVRVKANE--EGILESDEIKRCLELVMGEG-----DEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 394 A~rl~~~~GvG~~l~~~~--~~~~~~~~l~~~i~~vl~~~-----~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
|+++++.+|+|+.+..+. ...+++++|.++|+++|. + ++||++|+++++.+++++.+||||++++++|++.|
T Consensus 377 a~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~-~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~ 455 (459)
T PLN02448 377 SKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD-LESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDI 455 (459)
T ss_pred HHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 999997469999986421 135799999999999997 4 38999999999999999999999999999999998
Q ss_pred hc
Q 041902 467 GT 468 (470)
Q Consensus 467 ~~ 468 (470)
..
T Consensus 456 ~~ 457 (459)
T PLN02448 456 SQ 457 (459)
T ss_pred hc
Confidence 65
No 11
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.5e-60 Score=478.05 Aligned_cols=432 Identities=26% Similarity=0.420 Sum_probs=329.3
Q ss_pred ccCCCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC----CCCCCCCCCC
Q 041902 6 HRQHQPHFLLVTFPAQGHINPALQLARRLI-RIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD----GYDDGFNSKQ 80 (470)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~-~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~----~~~~~~~~~~ 80 (470)
|+++ .||+++|+|++||++|++.||+.|+ .+|++|||++++.+..++........+++++.+|. ++++.. .
T Consensus 2 ~~~~-pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~ 77 (481)
T PLN02992 2 HITK-PHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---A 77 (481)
T ss_pred CCCC-cEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---c
Confidence 3344 5999999999999999999999998 78999999999977654411110004689998874 343111 1
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCc
Q 041902 81 NDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDL 160 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (470)
+. ...+..+...+.+.++++++.+. .+|++||+|.+++|+..+|+++|||++.|++++++.++...+.+......
T Consensus 78 ~~-~~~~~~~~~~~~~~~~~~l~~~~----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 152 (481)
T PLN02992 78 HV-VTKIGVIMREAVPTLRSKIAEMH----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDI 152 (481)
T ss_pred cH-HHHHHHHHHHhHHHHHHHHHhcC----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccc
Confidence 12 22333344455677777776542 46899999999999999999999999999999998877665553211111
Q ss_pred ccc--ccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-C--
Q 041902 161 IEE--KVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-K-- 235 (470)
Q Consensus 161 p~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~-- 235 (470)
..+ ...++..+|++|.++..+++..+.. .. ......+.+......++ +.+++||+.+||+...+++. .
T Consensus 153 ~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~---~~--~~~~~~~~~~~~~~~~a--~gvlvNTf~eLE~~~l~~l~~~~~ 225 (481)
T PLN02992 153 KEEHTVQRKPLAMPGCEPVRFEDTLDAYLV---PD--EPVYRDFVRHGLAYPKA--DGILVNTWEEMEPKSLKSLQDPKL 225 (481)
T ss_pred ccccccCCCCcccCCCCccCHHHhhHhhcC---CC--cHHHHHHHHHHHhcccC--CEEEEechHHHhHHHHHHHhhccc
Confidence 100 0012345888887877777754322 11 12334444555555666 89999999999999988874 1
Q ss_pred ------CCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Q 041902 236 ------FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH 309 (470)
Q Consensus 236 ------~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (470)
++++.|||++..... . .. + ++|.+||+++++++||||||||...++.+++++++.+|+.++.
T Consensus 226 ~~~~~~~~v~~VGPl~~~~~~--------~--~~-~-~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~ 293 (481)
T PLN02992 226 LGRVARVPVYPIGPLCRPIQS--------S--KT-D-HPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQ 293 (481)
T ss_pred cccccCCceEEecCccCCcCC--------C--cc-h-HHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCC
Confidence 479999999864110 0 01 2 6799999999889999999999999999999999999999999
Q ss_pred CEEEEEecCCCCCC-------------CC-CchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhh
Q 041902 310 PFLWVIREHENKDK-------------DK-GEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLES 374 (470)
Q Consensus 310 ~~i~~~~~~~~~~~-------------~~-~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~ea 374 (470)
+|||+++.. ...+ .+ ..+.+|++|++++.++..++ +|+||.+||+|+++++|||||||||++||
T Consensus 294 ~flW~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Ea 372 (481)
T PLN02992 294 RFVWVVRPP-VDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLES 372 (481)
T ss_pred CEEEEEeCC-cccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHH
Confidence 999999742 1100 00 01257889998888776665 99999999999999999999999999999
Q ss_pred hhcCCcEeeccccchhhHHHHHHH-hhhcceeEeeecCCCCcCHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHh-
Q 041902 375 LVCGVPVVAFPQWTDQGTNAKIIV-DFCKTGVRVKANEEGILESDEIKRCLELVMGE--GDEFRGNSLKWKDLAREAAK- 450 (470)
Q Consensus 375 l~~GvP~v~~P~~~DQ~~nA~rl~-~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~--~~~~r~~a~~~~~~~~~~~~- 450 (470)
+++|||||++|++.||+.||++++ + +|+|+.++..+ +.++.++|.++|+++|.+ +..+|++++++++++++++.
T Consensus 373 l~~GVP~l~~P~~~DQ~~na~~~~~~-~g~gv~~~~~~-~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~ 450 (481)
T PLN02992 373 VVGGVPMIAWPLFAEQNMNAALLSDE-LGIAVRSDDPK-EVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSI 450 (481)
T ss_pred HHcCCCEEecCccchhHHHHHHHHHH-hCeeEEecCCC-CcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999995 6 99999997411 358999999999999972 24899999999999999994
Q ss_pred -cCCCcHHHHHHHHHHhhc
Q 041902 451 -QGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 451 -~~~~~~~~~~~~~~~l~~ 468 (470)
+||||++++++|++.+..
T Consensus 451 ~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 451 DGGGVAHESLCRVTKECQR 469 (481)
T ss_pred CCCCchHHHHHHHHHHHHH
Confidence 599999999999998753
No 12
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-60 Score=477.36 Aligned_cols=447 Identities=28% Similarity=0.483 Sum_probs=327.4
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCC--CC--CCceEEEcC-----CCCCCCCC
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPT--PE--DGLSFASFS-----DGYDDGFN 77 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~--~~--~g~~~~~i~-----~~~~~~~~ 77 (470)
+++++|++++|+|++||++|++.||+.|+.+|+.|||++++.+...+..... .. ..++|+.+| +++++..+
T Consensus 5 ~~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 5 KAKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred cCCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 4566899999999999999999999999999999999999887655412110 00 238899887 67877654
Q ss_pred CCCCCc-hhhHHHHHH---HhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHh
Q 041902 78 SKQNDP-RRYVSEFKR---RSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYY 153 (470)
Q Consensus 78 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~ 153 (470)
+..+.+ ..++..+.. .+.+.+.++++.. + .++++||+|.+++|+..+|+++|||++.|++++++.+...+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~-~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K-PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C-CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 433221 133333333 3445566655532 2 4689999999999999999999999999999999877765443
Q ss_pred hhccCCccccccCCcccCCCCCC---CCCCCCCCccCCCCCCCchhHHHHHHHHHHHHH-HhccCCeEEEcchHhhhHHH
Q 041902 154 FYGYGDLIEEKVNDLIELPGLPP---LTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAI-VEETDPKILVNTFDALEAET 229 (470)
Q Consensus 154 ~~~~~~~p~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~ 229 (470)
.......+.+....+..+|++|. ++..+++..+.. ... ...+...+... ..+ +.+++|||.+||+..
T Consensus 161 ~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~---~~~----~~~~~~~~~~~~~~a--~~vlvNTf~eLE~~~ 231 (491)
T PLN02534 161 RLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVS---LPD----LDDVRNKMREAESTA--FGVVVNSFNELEHGC 231 (491)
T ss_pred HHhcccccCCCCCceeecCCCCccccccHHHCChhhcC---ccc----HHHHHHHHHhhcccC--CEEEEecHHHhhHHH
Confidence 32111111111112455788863 566667665432 111 12223333322 234 789999999999998
Q ss_pred HHHhc---CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh
Q 041902 230 LRAID---KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD 306 (470)
Q Consensus 230 ~~~~~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~ 306 (470)
.+.+. +.+++.|||+.............+..... +.++|..||+++++++||||||||......+++.+++.+|+.
T Consensus 232 l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~-~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~ 310 (491)
T PLN02534 232 AEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASI-DETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEA 310 (491)
T ss_pred HHHHHhhcCCcEEEECcccccccccccccccCCcccc-chHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHh
Confidence 88886 35799999997531100000000111110 225799999999999999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCCCchhhhHHHHHHhC-CCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeecc
Q 041902 307 SGHPFLWVIREHENKDKDKGEDDVVMKYKEELN-EKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFP 385 (470)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P 385 (470)
++.+|+|+++.. ....+.....+|++|.+++. .++.+.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 311 ~~~~flW~~r~~-~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P 389 (491)
T PLN02534 311 SKKPFIWVIKTG-EKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWP 389 (491)
T ss_pred CCCCEEEEEecC-ccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecc
Confidence 999999999843 11100000025788887764 5555569999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhcceeEeeec------CC---C-CcCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHhc
Q 041902 386 QWTDQGTNAKIIVDFCKTGVRVKAN------EE---G-ILESDEIKRCLELVMG----EGDEFRGNSLKWKDLAREAAKQ 451 (470)
Q Consensus 386 ~~~DQ~~nA~rl~~~~GvG~~l~~~------~~---~-~~~~~~l~~~i~~vl~----~~~~~r~~a~~~~~~~~~~~~~ 451 (470)
++.||+.||+++++.+|+|+++..+ +. + .+++++|.++|+++|. ++.++|+||+++++++++++.+
T Consensus 390 ~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~ 469 (491)
T PLN02534 390 LFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMEL 469 (491)
T ss_pred ccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999998779999988421 00 1 3899999999999995 1458999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhc
Q 041902 452 GGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 452 ~~~~~~~~~~~~~~l~~ 468 (470)
||||..++++|++.|..
T Consensus 470 GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 470 GGSSHINLSILIQDVLK 486 (491)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 99999999999999864
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.1e-60 Score=475.41 Aligned_cols=440 Identities=24% Similarity=0.394 Sum_probs=325.9
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCC--CCceEEEcC----CCCCCCCCCCC
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE--DGLSFASFS----DGYDDGFNSKQ 80 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~--~g~~~~~i~----~~~~~~~~~~~ 80 (470)
++.+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+ ...... .+++++.+| ++++++.++..
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~-~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRL-PKIPSQLSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhh-hhccccCCCCeeEEECCCCccCCCCCCccccc
Confidence 45567999999999999999999999999999999999999877666 321100 368999887 67776554433
Q ss_pred CCch---hhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhh--
Q 041902 81 NDPR---RYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFY-- 155 (470)
Q Consensus 81 ~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~-- 155 (470)
+... ..+......+.+.++++++. .++++||+|.+..|+..+|+++|||++.|++++++.+..+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLET------SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHh------CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 3311 12333344455555555544 358999999999999999999999999999999988877654421
Q ss_pred ccCCccccccCCcccCCCCCC------CCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHH
Q 041902 156 GYGDLIEEKVNDLIELPGLPP------LTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAET 229 (470)
Q Consensus 156 ~~~~~p~~~~~~~~~~p~~~~------~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 229 (470)
.....+.. ......+|++.+ ++..+++.++.. ..........+.+......++ +.+++|||.+||+..
T Consensus 156 ~~~~~~~~-~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~---~~~~~~~~~~~~~~~~~~~~~--~gvlvNTf~eLE~~~ 229 (472)
T PLN02670 156 EGGDLRST-AEDFTVVPPWVPFESNIVFRYHEVTKYVEK---TEEDETGPSDSVRFGFAIGGS--DVVIIRSSPEFEPEW 229 (472)
T ss_pred hcccCCCc-cccccCCCCcCCCCccccccHHHhhHHHhc---cCccchHHHHHHHHHhhcccC--CEEEEeCHHHHhHHH
Confidence 11111111 011112444311 333455555432 111111223333444445556 899999999999999
Q ss_pred HHHhc---CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh
Q 041902 230 LRAID---KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD 306 (470)
Q Consensus 230 ~~~~~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~ 306 (470)
.+.++ +.+++.|||+............ ... . ..+++.+||+.+++++||||||||+...+.+++.+++.+|+.
T Consensus 230 l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~-~~~-~--~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~ 305 (472)
T PLN02670 230 FDLLSDLYRKPIIPIGFLPPVIEDDEEDDT-IDV-K--GWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEK 305 (472)
T ss_pred HHHHHHhhCCCeEEEecCCccccccccccc-ccc-c--hhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 98886 2579999999753100000000 000 0 116799999999889999999999999999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeecc
Q 041902 307 SGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFP 385 (470)
Q Consensus 307 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P 385 (470)
++.+|||+++.. ..........+|++|++++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 306 s~~~FlWv~r~~-~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 306 SETPFFWVLRNE-PGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred CCCCEEEEEcCC-cccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc
Confidence 999999999853 11100011268899998988887776 9999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhcceeEeeecC-CCCcCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 041902 386 QWTDQGTNAKIIVDFCKTGVRVKANE-EGILESDEIKRCLELVMGEGD---EFRGNSLKWKDLAREAAKQGGSSYKNLKA 461 (470)
Q Consensus 386 ~~~DQ~~nA~rl~~~~GvG~~l~~~~-~~~~~~~~l~~~i~~vl~~~~---~~r~~a~~~~~~~~~~~~~~~~~~~~~~~ 461 (470)
++.||+.||+++++ +|+|+.+...+ .+.++.++|.++|+++|. ++ +||+||+++++.+++ .+...+++++
T Consensus 385 ~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~-~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~ 458 (472)
T PLN02670 385 VLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMV-DDAGEEIRDKAKEMRNLFGD----MDRNNRYVDE 458 (472)
T ss_pred chhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHhC----cchhHHHHHH
Confidence 99999999999998 99999997522 235899999999999998 55 899999999999986 4888999999
Q ss_pred HHHHhhcCC
Q 041902 462 FVDDFGTSK 470 (470)
Q Consensus 462 ~~~~l~~~~ 470 (470)
|++.|.+++
T Consensus 459 ~~~~l~~~~ 467 (472)
T PLN02670 459 LVHYLRENR 467 (472)
T ss_pred HHHHHHHhc
Confidence 999988753
No 14
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=8.7e-60 Score=470.04 Aligned_cols=423 Identities=23% Similarity=0.393 Sum_probs=320.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCC-CCCC--ceEEEcC--CCCCCCCCCCCCC
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPT-PEDG--LSFASFS--DGYDDGFNSKQND 82 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~-~~~g--~~~~~i~--~~~~~~~~~~~~~ 82 (470)
+.++||+++|++++||++|++.||+.|+.+|+.|||++++.+...+ .... ...+ +.+.++| ++++++.++..+.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~-~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~ 81 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQL-EHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEI 81 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhh-cccccCCCCceEEEEECCCcCCCCCcccccccC
Confidence 4578999999999999999999999999999999999999876665 4321 0012 7777887 6777665443333
Q ss_pred chhhHHHHH---HHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCC
Q 041902 83 PRRYVSEFK---RRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGD 159 (470)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~ 159 (470)
+......+. ..+.+.+.++++. .+||+||+|+ ..|+..+|+++|||++.|++++++.+..... .. ..
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~------~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~~ 151 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRA------VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--GE 151 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHh------CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--cc
Confidence 212222222 2344556666544 2589999995 8899999999999999999999988777652 11 01
Q ss_pred ccccccCCcccCCCCCC----CCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-
Q 041902 160 LIEEKVNDLIELPGLPP----LTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID- 234 (470)
Q Consensus 160 ~p~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~- 234 (470)
. ....|++|. ++..+++.+..... ..........+.+.......+ +.+++|||.+||+.+.+++.
T Consensus 152 ~-------~~~~pglp~~~v~l~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s--~~vlvNTf~eLE~~~~~~~~~ 221 (453)
T PLN02764 152 L-------GVPPPGYPSSKVLLRKQDAYTMKNLEP-TNTIDVGPNLLERVTTSLMNS--DVIAIRTAREIEGNFCDYIEK 221 (453)
T ss_pred C-------CCCCCCCCCCcccCcHhhCcchhhcCC-CccchhHHHHHHHHHHhhccC--CEEEEeccHHhhHHHHHHHHh
Confidence 0 112477762 45555555322100 111112223334443555556 89999999999999988886
Q ss_pred --CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 041902 235 --KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFL 312 (470)
Q Consensus 235 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 312 (470)
+.+++.|||++.... .. .. ..++|.+|||.+++++||||||||....+.+++.++..+|+.++.+|+
T Consensus 222 ~~~~~v~~VGPL~~~~~----~~------~~-~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pfl 290 (453)
T PLN02764 222 HCRKKVLLTGPVFPEPD----KT------RE-LEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFL 290 (453)
T ss_pred hcCCcEEEeccCccCcc----cc------cc-chhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeE
Confidence 246999999975420 00 00 226899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhh
Q 041902 313 WVIREHENKDKDKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQG 391 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~ 391 (470)
|+++.. .... +....+|++|++++.+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 291 wv~r~~-~~~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~ 368 (453)
T PLN02764 291 VAVKPP-RGSS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQV 368 (453)
T ss_pred EEEeCC-CCCc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchH
Confidence 999954 2110 011268999999988887777 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 392 TNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD-----EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 392 ~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~-----~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
.||+++++.+|+|+.+..++.+.++.++|.++|+++|. ++ .+|++++++++++++ +|||.+++++|++++
T Consensus 369 ~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~-~~~~~g~~~r~~a~~~~~~~~~----~GSS~~~l~~lv~~~ 443 (453)
T PLN02764 369 LNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMK-RDSEIGNLVKKNHTKWRETLAS----PGLLTGYVDNFIESL 443 (453)
T ss_pred HHHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Confidence 99999964389999986421135899999999999998 53 489999999988864 799999999999999
Q ss_pred hcC
Q 041902 467 GTS 469 (470)
Q Consensus 467 ~~~ 469 (470)
.++
T Consensus 444 ~~~ 446 (453)
T PLN02764 444 QDL 446 (453)
T ss_pred HHh
Confidence 875
No 15
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=9.7e-60 Score=480.51 Aligned_cols=443 Identities=27% Similarity=0.452 Sum_probs=318.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCC-----CC----CceEEEcC---CCCCCCCC
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTP-----ED----GLSFASFS---DGYDDGFN 77 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~-----~~----g~~~~~i~---~~~~~~~~ 77 (470)
++||+|+|+|++||++|++.||++|+.|||+|||++++.+.+.+ ++... .. .+.++++| +++++..+
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i-~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIF-EKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhh-hhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46999999999999999999999999999999999999887665 43110 01 34456666 46665443
Q ss_pred CCC-------CCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHH
Q 041902 78 SKQ-------NDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVY 150 (470)
Q Consensus 78 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~ 150 (470)
... .....++..+... .+.+.+.++.+.++ .+||+||+|.+++|+..+|+++|||++.|++++++.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFS-TKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred cccccccccccchHHHHHHHHHH-HHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 321 0102333344432 23333444443322 4689999999999999999999999999999998777665
Q ss_pred HHhhhccCCccccccCCcccCCCCCC---CCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhH
Q 041902 151 YYYFYGYGDLIEEKVNDLIELPGLPP---LTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEA 227 (470)
Q Consensus 151 ~~~~~~~~~~p~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 227 (470)
+...............+...+|++|. ++..+++.. .........+....+...+. +.+++||+.+||+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~vl~Nt~~~le~ 231 (482)
T PLN03007 161 YCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA-------DEESPMGKFMKEVRESEVKS--FGVLVNSFYELES 231 (482)
T ss_pred HHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC-------CCchhHHHHHHHHHhhcccC--CEEEEECHHHHHH
Confidence 54432110000000011233677752 222222221 11122233344444444555 8999999999999
Q ss_pred HHHHHhc---CCCeeEeccccCCCccCC-cccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHH
Q 041902 228 ETLRAID---KFNMIAIGPLVASALWDG-KELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARG 303 (470)
Q Consensus 228 ~~~~~~~---~~~~~~vGpl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~a 303 (470)
...+.++ ..++++|||+....+... ....+..... ++++|.+|++.+++++||||||||+...+.+++.++..+
T Consensus 232 ~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~--~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~ 309 (482)
T PLN03007 232 AYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANI--DEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAG 309 (482)
T ss_pred HHHHHHHhccCCCEEEEccccccccccccccccCCcccc--chhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHH
Confidence 8777776 246999999865421100 0000101111 237899999999889999999999998888999999999
Q ss_pred HHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhC-CCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEe
Q 041902 304 LLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELN-EKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVV 382 (470)
Q Consensus 304 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v 382 (470)
|+.++.+|||+++.. ... .+....+|+++++++. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 310 l~~~~~~flw~~~~~-~~~-~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 310 LEGSGQNFIWVVRKN-ENQ-GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHCCCCEEEEEecC-Ccc-cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 999999999999864 211 0011257888887764 6666679999999999999999999999999999999999999
Q ss_pred eccccchhhHHHHHHHhhhcceeEeeec-----CCCCcCHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHhcCCC
Q 041902 383 AFPQWTDQGTNAKIIVDFCKTGVRVKAN-----EEGILESDEIKRCLELVMGEGD---EFRGNSLKWKDLAREAAKQGGS 454 (470)
Q Consensus 383 ~~P~~~DQ~~nA~rl~~~~GvG~~l~~~-----~~~~~~~~~l~~~i~~vl~~~~---~~r~~a~~~~~~~~~~~~~~~~ 454 (470)
++|+++||+.||+++++.+++|+.+..+ +...++.++|.++|+++|. ++ +||++|+++++.+++++.+|||
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~-~~~~~~~r~~a~~~~~~a~~a~~~gGs 466 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIV-GEEAEERRLRAKKLAEMAKAAVEEGGS 466 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999987545666665311 1246899999999999998 66 8999999999999999999999
Q ss_pred cHHHHHHHHHHhhcCC
Q 041902 455 SYKNLKAFVDDFGTSK 470 (470)
Q Consensus 455 ~~~~~~~~~~~l~~~~ 470 (470)
|++++++|++.|.+-|
T Consensus 467 S~~~l~~~v~~~~~~~ 482 (482)
T PLN03007 467 SFNDLNKFMEELNSRK 482 (482)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999987654
No 16
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.1e-59 Score=477.59 Aligned_cols=438 Identities=26% Similarity=0.433 Sum_probs=333.5
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCccchh----hhc---CC-CCCCCCceEEEcCCCCCCC
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIG----TRVTFATTIFAYR----RMA---NS-PTPEDGLSFASFSDGYDDG 75 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~G----h~V~~~~~~~~~~----~v~---~~-~~~~~g~~~~~i~~~~~~~ 75 (470)
+++.||+++|++++||++|++.||+.|+.+| +.|||++++.... .+. .. .....+++|+++|++..+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 3577999999999999999999999999997 7999999765321 120 11 0000259999998764221
Q ss_pred CCCCCCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhh
Q 041902 76 FNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFY 155 (470)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~ 155 (470)
. ..+. ..++..+...+.+.++++++.+ . .++++||+|.+.+|+..+|+++|||++.|++++++.+...++.+.
T Consensus 81 ~--~e~~-~~~~~~~~~~~~~~l~~~L~~l---~-~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~ 153 (480)
T PLN00164 81 D--AAGV-EEFISRYIQLHAPHVRAAIAGL---S-CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPA 153 (480)
T ss_pred c--cccH-HHHHHHHHHhhhHHHHHHHHhc---C-CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhh
Confidence 1 1122 3444445556677777777654 1 357999999999999999999999999999999999888877653
Q ss_pred ccCCcccccc--CCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHh
Q 041902 156 GYGDLIEEKV--NDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAI 233 (470)
Q Consensus 156 ~~~~~p~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 233 (470)
.....+.+.. .+++.+|++|.++..+++.++... .. .....+....+...++ +.+++|||.+||+...+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~--~~---~~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~ 226 (480)
T PLN00164 154 LDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDK--KS---PNYAWFVYHGRRFMEA--AGIIVNTAAELEPGVLAAI 226 (480)
T ss_pred hcccccCcccccCcceecCCCCCCChHHCCchhcCC--Cc---HHHHHHHHHHHhhhhc--CEEEEechHHhhHHHHHHH
Confidence 2222111110 124458999888888888765431 11 1122333344555666 8999999999999998888
Q ss_pred c-C--------CCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHH
Q 041902 234 D-K--------FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGL 304 (470)
Q Consensus 234 ~-~--------~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al 304 (470)
. . ++++.|||+......+ .... ..++|.+||+.+++++||||||||....+.+++.+++.+|
T Consensus 227 ~~~~~~~~~~~~~v~~vGPl~~~~~~~-------~~~~--~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL 297 (480)
T PLN00164 227 ADGRCTPGRPAPTVYPIGPVISLAFTP-------PAEQ--PPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGL 297 (480)
T ss_pred HhccccccCCCCceEEeCCCccccccC-------CCcc--chHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHH
Confidence 5 2 3699999997431111 0011 2268999999999999999999999988999999999999
Q ss_pred HhCCCCEEEEEecCCCCC------CCCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhc
Q 041902 305 LDSGHPFLWVIREHENKD------KDKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVC 377 (470)
Q Consensus 305 ~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~ 377 (470)
+.++.+|||+++.. ... ..+..+.+|+++++++.+++.++ +|+||.+||+|+++++|||||||||++||+.+
T Consensus 298 ~~s~~~flWv~~~~-~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~ 376 (480)
T PLN00164 298 ERSGHRFLWVLRGP-PAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWH 376 (480)
T ss_pred HHcCCCEEEEEcCC-cccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHc
Confidence 99999999999853 210 00011247888888888787777 99999999999999999999999999999999
Q ss_pred CCcEeeccccchhhHHHHHHHhhhcceeEeeecC--CCCcCHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHhc
Q 041902 378 GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE--EGILESDEIKRCLELVMGE----GDEFRGNSLKWKDLAREAAKQ 451 (470)
Q Consensus 378 GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~--~~~~~~~~l~~~i~~vl~~----~~~~r~~a~~~~~~~~~~~~~ 451 (470)
|||||++|+++||+.||+++++.+|+|+.+..++ .+.++.++|.++|+++|.+ ...+|++|+++++++++++.+
T Consensus 377 GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~ 456 (480)
T PLN00164 377 GVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEE 456 (480)
T ss_pred CCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998754489999996421 1247999999999999972 235899999999999999999
Q ss_pred CCCcHHHHHHHHHHhhcC
Q 041902 452 GGSSYKNLKAFVDDFGTS 469 (470)
Q Consensus 452 ~~~~~~~~~~~~~~l~~~ 469 (470)
|||+.+++++|+++|...
T Consensus 457 gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 457 GGSSYAALQRLAREIRHG 474 (480)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999998753
No 17
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=8e-60 Score=472.09 Aligned_cols=428 Identities=25% Similarity=0.442 Sum_probs=323.0
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCccchhhhc---CCCCCC-CCceEEEcCCCCCCCCCCCC-
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIG--TRVTF--ATTIFAYRRMA---NSPTPE-DGLSFASFSDGYDDGFNSKQ- 80 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~G--h~V~~--~~~~~~~~~v~---~~~~~~-~g~~~~~i~~~~~~~~~~~~- 80 (470)
+.|++++|+|++||++|++.||+.|+.+| +.||+ .+++.+...+. +..... ++++|+.+|++.+.......
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 55665 44443222210 111000 46999999877542221111
Q ss_pred -CCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCC
Q 041902 81 -NDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGD 159 (470)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~ 159 (470)
+. ...+..+...+...+.++++.+.. + .++++||+|.+.+|+..+|+++|||++.|++++++.+..+++.+.....
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~l~~l~~-~-~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 83 HHH-ESLLLEILCFSNPSVHRTLFSLSR-N-FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cCH-HHHHHHHHHhhhHHHHHHHHhcCC-C-CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 22 233444445667777888877632 2 3469999999999999999999999999999999999888776532211
Q ss_pred ccccc-c-CCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-C-
Q 041902 160 LIEEK-V-NDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-K- 235 (470)
Q Consensus 160 ~p~~~-~-~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~- 235 (470)
.+... . ..++.+|++|.++..+++.++.. .. ......+.+......++ +.+++|||.+||+...+.+. .
T Consensus 160 ~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~---~~--~~~~~~~~~~~~~~~~~--~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 160 TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLE---RD--DEVYDVFIMFGKQLSKS--SGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred ccccccccCCeecCCCCCCCChHHCchhhcC---Cc--hHHHHHHHHHHHhhccc--CeeeeeeHHHhHHHHHHHHHhcC
Confidence 11110 1 12356899988888888876643 11 12334445555555666 89999999999999888885 2
Q ss_pred --CCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 236 --FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 236 --~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
.+++.|||++...... . . ... ...+|.+||+.+++++||||||||....+.+++++++.+|+.++.+|||
T Consensus 233 ~~~~v~~vGPl~~~~~~~---~-~-~~~---~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW 304 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIE---D-R-NDN---KAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLW 304 (451)
T ss_pred CCCCEEEEeeeccCcccc---c-c-ccc---hhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 3699999998532110 0 0 011 1157999999998899999999999999999999999999999999999
Q ss_pred EEecCCCC-CCC--CCchhhhHHHHHHhCCC-eEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccch
Q 041902 314 VIREHENK-DKD--KGEDDVVMKYKEELNEK-GMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTD 389 (470)
Q Consensus 314 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~n-v~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~D 389 (470)
+++.. .. ..+ +....+|++|++++.++ +.+.+|+||.+||+|+++++|||||||||++||+++|||||++|++.|
T Consensus 305 ~~r~~-~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~D 383 (451)
T PLN03004 305 VVRNP-PELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAE 383 (451)
T ss_pred EEcCC-ccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEecccccc
Confidence 99843 11 000 00113788999888755 455699999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 041902 390 QGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYK 457 (470)
Q Consensus 390 Q~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~ 457 (470)
|+.||+++++.+|+|+.++.++.+.++.++|.++|+++|. +++||++++++++..++++.+||||++
T Consensus 384 Q~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~-~~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 384 QRFNRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIG-ECPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred chhhHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999975379999997521135799999999999999 999999999999999999999999874
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=9.6e-60 Score=472.24 Aligned_cols=421 Identities=21% Similarity=0.347 Sum_probs=310.0
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCC-CCceEEEc--C--CCCCCCCCCCCC
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE-DGLSFASF--S--DGYDDGFNSKQN 81 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~-~g~~~~~i--~--~~~~~~~~~~~~ 81 (470)
|+.++|++++|+|++||++|++.||+.|+.+||+|||++++.+...+ ++.+.. .++++..+ | +++++...+..+
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i-~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~ 79 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQL-EHHNLFPDSIVFHPLTIPPVNGLPAGAETTSD 79 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhh-hcccCCCCceEEEEeCCCCccCCCCCcccccc
Confidence 46789999999999999999999999999999999999999888777 542210 24555544 4 566665443322
Q ss_pred CchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCcc
Q 041902 82 DPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLI 161 (470)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p 161 (470)
. ...+..++........+.++.+.++ .++|+||+| ++.|+..+|+++|||++.|++++++.+. +++.+.. ..
T Consensus 80 l-~~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~--~~- 151 (442)
T PLN02208 80 I-PISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGG--KL- 151 (442)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcc--cc-
Confidence 2 2222222222222222323332222 468999999 5789999999999999999999987653 3322210 00
Q ss_pred ccccCCcccCCCCCC----CCCCCCCCccCCCCCCCchhHHHHHHH-HHHHHHHhccCCeEEEcchHhhhHHHHHHhc--
Q 041902 162 EEKVNDLIELPGLPP----LTGWDLPSFMDPRKSNDAYSFILTCFK-EQMEAIVEETDPKILVNTFDALEAETLRAID-- 234 (470)
Q Consensus 162 ~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-- 234 (470)
...+|++|. ++..+++.+ .. .......+. +......++ +.+++|||.+||+.+.+++.
T Consensus 152 ------~~~~pglp~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~--~~vl~Ntf~eLE~~~~~~~~~~ 216 (442)
T PLN02208 152 ------GVPPPGYPSSKVLFRENDAHAL-AT------LSIFYKRLYHQITTGLKSC--DVIALRTCKEIEGKFCDYISRQ 216 (442)
T ss_pred ------CCCCCCCCCcccccCHHHcCcc-cc------cchHHHHHHHHHHhhhccC--CEEEEECHHHHHHHHHHHHHhh
Confidence 112577764 334455532 11 111122223 222344556 89999999999999888886
Q ss_pred -CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 235 -KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 235 -~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
.++++.|||+...... . ++ .++++.+|||.+++++||||||||...++.+++.+++.+++..+.+++|
T Consensus 217 ~~~~v~~vGpl~~~~~~----~------~~-~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~w 285 (442)
T PLN02208 217 YHKKVLLTGPMFPEPDT----S------KP-LEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLI 285 (442)
T ss_pred cCCCEEEEeecccCcCC----C------CC-CHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 3579999999864210 0 11 3378999999998899999999999988989999999999999999999
Q ss_pred EEecCCCCCCCCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhH
Q 041902 314 VIREHENKDKDKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGT 392 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~ 392 (470)
+++.+ ... ......+|++|++++.++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 286 v~r~~-~~~-~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~ 363 (442)
T PLN02208 286 AVKPP-RGS-STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVL 363 (442)
T ss_pred EEeCC-Ccc-cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHH
Confidence 99864 211 0011268889988877555555 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 393 NAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD-----EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 393 nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~-----~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
||+++++.+|+|+.+..++.+.++.++|.++|+++|. ++ .+|++++++++.+. .+|||.+++++|+++|.
T Consensus 364 na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~-~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~ 438 (442)
T PLN02208 364 FTRLMTEEFEVSVEVSREKTGWFSKESLSNAIKSVMD-KDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQ 438 (442)
T ss_pred HHHHHHHHhceeEEeccccCCcCcHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHH
Confidence 9998765489999997521123999999999999997 43 49999999999874 36899999999999987
Q ss_pred cC
Q 041902 468 TS 469 (470)
Q Consensus 468 ~~ 469 (470)
++
T Consensus 439 ~~ 440 (442)
T PLN02208 439 EY 440 (442)
T ss_pred Hh
Confidence 64
No 19
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.8e-59 Score=469.05 Aligned_cols=434 Identities=25% Similarity=0.392 Sum_probs=329.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchhhhc-----CCCCCCCCceEEEcCCCCCCCC-CCCCC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRI-GTRVTFATTIFAYRRMA-----NSPTPEDGLSFASFSDGYDDGF-NSKQN 81 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~-Gh~V~~~~~~~~~~~v~-----~~~~~~~g~~~~~i~~~~~~~~-~~~~~ 81 (470)
.+.|++++|+|++||++|++.||+.|+.+ |..|||++++.....+. .......+++++.+|....+.. ....+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 35699999999999999999999999987 99999998775443220 1110002589999985432221 10112
Q ss_pred CchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCC-eEEEechhhHHHHHHHHhhhccCCc
Q 041902 82 DPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLP-SALLWIQPALVFDVYYYYFYGYGDL 160 (470)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP-~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (470)
. ...+......+.+.++++++.+. .++++||+|.+..|+..+|+++||| .+.+++++++.+...++.+......
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~ 156 (470)
T PLN03015 82 I-FTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVV 156 (470)
T ss_pred H-HHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhccc
Confidence 3 32344444567778888887653 3589999999999999999999999 5777777777666666554211111
Q ss_pred ccc--ccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-C--
Q 041902 161 IEE--KVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-K-- 235 (470)
Q Consensus 161 p~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~-- 235 (470)
..+ ...+++.+|++|.++..+++..+.. ... .. ...+.+..+...++ +.+++|||.+||+...+.+. .
T Consensus 157 ~~~~~~~~~~~~vPg~p~l~~~dlp~~~~~---~~~-~~-~~~~~~~~~~~~~a--~gvlvNTf~eLE~~~~~~l~~~~~ 229 (470)
T PLN03015 157 EGEYVDIKEPLKIPGCKPVGPKELMETMLD---RSD-QQ-YKECVRSGLEVPMS--DGVLVNTWEELQGNTLAALREDME 229 (470)
T ss_pred ccccCCCCCeeeCCCCCCCChHHCCHhhcC---CCc-HH-HHHHHHHHHhcccC--CEEEEechHHHhHHHHHHHHhhcc
Confidence 111 0012456899988888888875543 111 11 22333444445666 99999999999999888885 2
Q ss_pred ------CCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC
Q 041902 236 ------FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH 309 (470)
Q Consensus 236 ------~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (470)
++++.|||++..... .. +.+++.+|||++++++||||||||....+.+++.+++.+|+.++.
T Consensus 230 ~~~~~~~~v~~VGPl~~~~~~-----------~~-~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~ 297 (470)
T PLN03015 230 LNRVMKVPVYPIGPIVRTNVH-----------VE-KRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQ 297 (470)
T ss_pred cccccCCceEEecCCCCCccc-----------cc-chHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCC
Confidence 469999999843100 00 225799999999899999999999999999999999999999999
Q ss_pred CEEEEEecCCCC-------CCCCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcE
Q 041902 310 PFLWVIREHENK-------DKDKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPV 381 (470)
Q Consensus 310 ~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~ 381 (470)
+|||+++.. .. +.++..+.+|+++.+++.++++++ +|+||.+||+|+++++|||||||||++||+++||||
T Consensus 298 ~FlWv~r~~-~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~ 376 (470)
T PLN03015 298 RFVWVLRRP-ASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPI 376 (470)
T ss_pred cEEEEEecC-ccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCE
Confidence 999999742 11 001112258889999998888766 999999999999999999999999999999999999
Q ss_pred eeccccchhhHHHHHHHhhhcceeEeee-cCCCCcCHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHhcCCCcH
Q 041902 382 VAFPQWTDQGTNAKIIVDFCKTGVRVKA-NEEGILESDEIKRCLELVMG----EGDEFRGNSLKWKDLAREAAKQGGSSY 456 (470)
Q Consensus 382 v~~P~~~DQ~~nA~rl~~~~GvG~~l~~-~~~~~~~~~~l~~~i~~vl~----~~~~~r~~a~~~~~~~~~~~~~~~~~~ 456 (470)
|++|++.||+.||+++++.+|+|+.+.. .+.+.++.++|.++|+++|. ++.++|+||++++++.++++.+||||+
T Consensus 377 v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~ 456 (470)
T PLN03015 377 VAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSY 456 (470)
T ss_pred EecccccchHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999999999545999999951 11246899999999999994 145899999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 041902 457 KNLKAFVDDFG 467 (470)
Q Consensus 457 ~~~~~~~~~l~ 467 (470)
+++++|++++.
T Consensus 457 ~nl~~~~~~~~ 467 (470)
T PLN03015 457 NSLFEWAKRCY 467 (470)
T ss_pred HHHHHHHHhcc
Confidence 99999999874
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.9e-59 Score=469.26 Aligned_cols=422 Identities=23% Similarity=0.354 Sum_probs=311.9
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCC-CCceEEEc--C--CCCCCCCCCCCC
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE-DGLSFASF--S--DGYDDGFNSKQN 81 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~-~g~~~~~i--~--~~~~~~~~~~~~ 81 (470)
|+.+.|++++|+|++||++|++.||+.|+.+|++|||++++.+...+ +..... .+++|.++ | ++++++.+...+
T Consensus 1 ~~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i-~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 1 MGSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQL-QPLNLFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhh-cccccCCCceEEEEecCCCcCCCCCccccccc
Confidence 45678999999999999999999999999999999999999877666 432210 35788554 3 677766443333
Q ss_pred CchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCcc
Q 041902 82 DPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLI 161 (470)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p 161 (470)
........+... ...+...++.+.++ .+||+||+|+ ++|+..+|+++|||++.|++++++.+...++.....
T Consensus 80 l~~~~~~~~~~a-~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~---- 151 (446)
T PLN00414 80 LPNSTKKPIFDA-MDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAEL---- 151 (446)
T ss_pred chhhHHHHHHHH-HHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhc----
Confidence 211111122222 22233333333222 4689999995 889999999999999999999998887766522100
Q ss_pred ccccCCcccCCCCCC----CCCCCC--CCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-
Q 041902 162 EEKVNDLIELPGLPP----LTGWDL--PSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID- 234 (470)
Q Consensus 162 ~~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~- 234 (470)
...+|++|. ++..+. +.++.. ....+.+..+...++ +.+++|||.+||+.+.+.+.
T Consensus 152 ------~~~~pg~p~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~--~~vlvNTf~eLE~~~~~~~~~ 214 (446)
T PLN00414 152 ------GFPPPDYPLSKVALRGHDANVCSLFAN---------SHELFGLITKGLKNC--DVVSIRTCVELEGNLCDFIER 214 (446)
T ss_pred ------CCCCCCCCCCcCcCchhhcccchhhcc---------cHHHHHHHHHhhccC--CEEEEechHHHHHHHHHHHHH
Confidence 012455543 111111 111111 113344444555666 89999999999999988886
Q ss_pred --CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEE
Q 041902 235 --KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFL 312 (470)
Q Consensus 235 --~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 312 (470)
..+++.|||+....... .. .. +.+++.+|||.+++++||||||||....+.+++.++..+|+.+|.+|+
T Consensus 215 ~~~~~v~~VGPl~~~~~~~-~~-------~~-~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Fl 285 (446)
T PLN00414 215 QCQRKVLLTGPMLPEPQNK-SG-------KP-LEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFL 285 (446)
T ss_pred hcCCCeEEEcccCCCcccc-cC-------cc-cHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeE
Confidence 24699999997542110 00 00 125799999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhh
Q 041902 313 WVIREHENKDKDKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQG 391 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~ 391 (470)
|++... .... +..+.+|++|++++.++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 286 wvvr~~-~~~~-~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~ 363 (446)
T PLN00414 286 IAVMPP-KGSS-TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQV 363 (446)
T ss_pred EEEecC-CCcc-cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchH
Confidence 999863 1110 112368999999999998887 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 392 TNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD-----EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 392 ~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~-----~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
.||+++++.+|+|+.+..++.+.++.++|.++++++|. ++ .+|++++++++.+. ++||++ ..+++|++++
T Consensus 364 ~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~-~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~~ 438 (446)
T PLN00414 364 LITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMD-KDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEAL 438 (446)
T ss_pred HHHHHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHHH
Confidence 99999963389999996521135899999999999997 43 49999999999974 345533 4499999998
Q ss_pred hcCC
Q 041902 467 GTSK 470 (470)
Q Consensus 467 ~~~~ 470 (470)
.+++
T Consensus 439 ~~~~ 442 (446)
T PLN00414 439 ENEV 442 (446)
T ss_pred HHhc
Confidence 7653
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.4e-59 Score=473.17 Aligned_cols=442 Identities=25% Similarity=0.434 Sum_probs=326.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCccc-----hhhhcCCCCCC-CCceEEEcCCCCCC-CCCC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGT---RVTFATTIFA-----YRRMANSPTPE-DGLSFASFSDGYDD-GFNS 78 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh---~V~~~~~~~~-----~~~v~~~~~~~-~g~~~~~i~~~~~~-~~~~ 78 (470)
++.||+|+|+|++||++|++.||+.|+.+|. .||++.+... ...+ ...... ++++|+.+|++..+ ..+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~-~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFL-KSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHH-hhcccCCCCeEEEECCCCCCCccccc
Confidence 4569999999999999999999999999984 5666654321 1112 211000 36999999865422 1111
Q ss_pred CCCCchhhHHHHHHHhHHHHHHHHHhhhhc----CCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhh
Q 041902 79 KQNDPRRYVSEFKRRSSEALTEIITGSENQ----GAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYF 154 (470)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~ 154 (470)
........+..+...+...+++.++.+..+ +..++++||+|.+++|+..+|+++|||++.|++++++.+..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 111112233334445566666666665321 1014599999999999999999999999999999998888877654
Q ss_pred hccCCcccc---cc-CCcccCCCC-CCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHH
Q 041902 155 YGYGDLIEE---KV-NDLIELPGL-PPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAET 229 (470)
Q Consensus 155 ~~~~~~p~~---~~-~~~~~~p~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 229 (470)
......+.. .. .++..+|++ +.++..+++..... ... ...+.+.++...++ +.+++|||.+||+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~---~~~----~~~~~~~~~~~~~a--~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFM---KES----YEAWVEIAERFPEA--KGILVNSFTELEPNA 231 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhC---cch----HHHHHHHHHhhccc--CEeeeccHHHHHHHH
Confidence 322111100 01 123558888 45777777654432 111 22334555555666 899999999999998
Q ss_pred HHHhc----C-CCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHH
Q 041902 230 LRAID----K-FNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGL 304 (470)
Q Consensus 230 ~~~~~----~-~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al 304 (470)
.+++. . +++++|||+....... .. ..... +..++.+||+.+++++||||||||+...+.+++.+++.+|
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~~~~~-~~----~~~~~-~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l 305 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSLKDRT-SP----NLDSS-DRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQAL 305 (475)
T ss_pred HHHHHhhcccCCeeEEecccccccccc-CC----CCCcc-hhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHH
Confidence 88874 1 3699999998642100 00 11111 2267999999998899999999999888999999999999
Q ss_pred HhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeec
Q 041902 305 LDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF 384 (470)
Q Consensus 305 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~ 384 (470)
+.++.+|||+++.. .....+....+|+++.+++.+++++++|+||.+||+|+++++|||||||||++||+++|||||++
T Consensus 306 ~~~~~~flw~~~~~-~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~ 384 (475)
T PLN02167 306 ELVGCRFLWSIRTN-PAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATW 384 (475)
T ss_pred HhCCCcEEEEEecC-cccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEec
Confidence 99999999999753 21100011257889998999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHH-HHhhhcceeEeeecC----CCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 041902 385 PQWTDQGTNAKI-IVDFCKTGVRVKANE----EGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNL 459 (470)
Q Consensus 385 P~~~DQ~~nA~r-l~~~~GvG~~l~~~~----~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~ 459 (470)
|++.||+.||++ +++ +|+|+.+..+. ...+++++|.++|+++|.+++.||++|+++++.+++++.+||||++++
T Consensus 385 P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGsS~~~l 463 (475)
T PLN02167 385 PMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGSSFVAV 463 (475)
T ss_pred cccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999976 666 99999996420 135799999999999998334899999999999999999999999999
Q ss_pred HHHHHHhhc
Q 041902 460 KAFVDDFGT 468 (470)
Q Consensus 460 ~~~~~~l~~ 468 (470)
++|++.|..
T Consensus 464 ~~~v~~i~~ 472 (475)
T PLN02167 464 KRFIDDLLG 472 (475)
T ss_pred HHHHHHHHh
Confidence 999999864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-45 Score=376.46 Aligned_cols=404 Identities=17% Similarity=0.182 Sum_probs=278.5
Q ss_pred CEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc--hhhhcCCCCCCCCceEEEcCCCCCCC---CCCC----C
Q 041902 11 PHFLLV-TFPAQGHINPALQLARRLIRIGTRVTFATTIFA--YRRMANSPTPEDGLSFASFSDGYDDG---FNSK----Q 80 (470)
Q Consensus 11 ~~il~~-~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~--~~~v~~~~~~~~g~~~~~i~~~~~~~---~~~~----~ 80 (470)
-||+++ |.++.+|+.-+-+|+++|++|||+||++++... .+.. +. .+++.+.++...... .... .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~-~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASH-LC----GNITEIDASLSVEYFKKLVKSSAVFRK 95 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccC-CC----CCEEEEEcCCChHHHHHHHhhhhHHHh
Confidence 468755 889999999999999999999999999977542 1111 22 567777664111100 0000 0
Q ss_pred -CC---chhh----HHHHHHHhHHHH--HHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHc-CCCeEEEechhhHHHHH
Q 041902 81 -ND---PRRY----VSEFKRRSSEAL--TEIITGSENQGAQPFTCLVYSLLLPWTAEVARAY-HLPSALLWIQPALVFDV 149 (470)
Q Consensus 81 -~~---~~~~----~~~~~~~~~~~~--~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~-giP~i~~~~~~~~~~~~ 149 (470)
+. .... ...+...+...+ .++.+.++... .++|+||+|.+..++..+|+.+ ++|.|.+++........
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~-~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 96 RGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN-NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC-CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 00 0001 111122222222 11223333112 5799999998888999999999 99988877654432211
Q ss_pred HHHhhhccCCccccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhH-----------HHHHHHHHH--------HHHH
Q 041902 150 YYYYFYGYGDLIEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSF-----------ILTCFKEQM--------EAIV 210 (470)
Q Consensus 150 ~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~-----------~~~~~~~~~--------~~~~ 210 (470)
.. .++.|.+ +.++|.+ .....+-+++++|..|...... ..+...+.+ +...
T Consensus 175 ~~-----~gg~p~~----~syvP~~-~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~ 244 (507)
T PHA03392 175 ET-----MGAVSRH----PVYYPNL-WRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRN 244 (507)
T ss_pred Hh-----hccCCCC----CeeeCCc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHh
Confidence 11 1112322 2335544 3344466777777654211100 000111111 1111
Q ss_pred hccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccc
Q 041902 211 EETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTIC 290 (470)
Q Consensus 211 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~ 290 (470)
.. +++++|+.+.++.+. +.+ .++++|||+..+...+ ++ .++++.+|++.++ +++|||||||+.
T Consensus 245 ~~--~l~lvns~~~~d~~r-p~~--p~v~~vGgi~~~~~~~----------~~-l~~~l~~fl~~~~-~g~V~vS~GS~~ 307 (507)
T PHA03392 245 RV--QLLFVNVHPVFDNNR-PVP--PSVQYLGGLHLHKKPP----------QP-LDDYLEEFLNNST-NGVVYVSFGSSI 307 (507)
T ss_pred CC--cEEEEecCccccCCC-CCC--CCeeeecccccCCCCC----------CC-CCHHHHHHHhcCC-CcEEEEECCCCC
Confidence 22 688999999999764 333 3699999998742110 11 3489999999764 579999999986
Q ss_pred c---CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccC
Q 041902 291 V---LEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCG 367 (470)
Q Consensus 291 ~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG 367 (470)
. .+.+.++.++++++..+.++||+.+.. ..+ ...|+|+++.+|+||.+||+|+.+++||||||
T Consensus 308 ~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~----------~~~----~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG 373 (507)
T PHA03392 308 DTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE----------VEA----INLPANVLTQKWFPQRAVLKHKNVKAFVTQGG 373 (507)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCeEEEEECCC----------cCc----ccCCCceEEecCCCHHHHhcCCCCCEEEecCC
Confidence 3 467889999999999999999988744 211 13579999999999999999998888999999
Q ss_pred chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 041902 368 WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLARE 447 (470)
Q Consensus 368 ~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~ 447 (470)
.||++||+++|||||++|+++||+.||+|+++ +|+|+.+++ .+++.++|.++|+++|+ |++||++|+++++.+++
T Consensus 374 ~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~---~~~t~~~l~~ai~~vl~-~~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 374 VQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDT---VTVSAAQLVLAIVDVIE-NPKYRKNLKELRHLIRH 448 (507)
T ss_pred cccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEecc---CCcCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998 999999997 78999999999999999 99999999999999986
Q ss_pred HHhcCCCcHHHHHHHHHHhhcC
Q 041902 448 AAKQGGSSYKNLKAFVDDFGTS 469 (470)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~l~~~ 469 (470)
..-++.+.+..++|.+...
T Consensus 449 ---~p~~~~~~av~~iE~v~r~ 467 (507)
T PHA03392 449 ---QPMTPLHKAIWYTEHVIRN 467 (507)
T ss_pred ---CCCCHHHHHHHHHHHHHhC
Confidence 2445666666777776554
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=7.9e-44 Score=358.14 Aligned_cols=374 Identities=19% Similarity=0.246 Sum_probs=260.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCC----CCCchhhHHHHH
Q 041902 16 VTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSK----QNDPRRYVSEFK 91 (470)
Q Consensus 16 ~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~ 91 (470)
+.+|+.||++|++.||++|+++||+|+|++++.+.+.+ +. .|+.|++++..+....... .+. ..+...+.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v-~~----~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 74 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERV-EA----AGAEFVLYGSALPPPDNPPENTEEEP-IDIIEKLL 74 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHH-HH----cCCEEEecCCcCccccccccccCcch-HHHHHHHH
Confidence 36899999999999999999999999999999999999 88 8999999986544311110 122 34445555
Q ss_pred HHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCcccC
Q 041902 92 RRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDLIEL 171 (470)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 171 (470)
..+...+.++.+.++. .+||+||+|.+++++..+|+.+|||+|.+++.+... ..++.. ..|. .
T Consensus 75 ~~~~~~~~~l~~~~~~---~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~--~~~~--------~ 137 (392)
T TIGR01426 75 DEAEDVLPQLEEAYKG---DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEM--VSPA--------G 137 (392)
T ss_pred HHHHHHHHHHHHHhcC---CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccc--cccc--------c
Confidence 5555555555555544 579999999988899999999999999885432210 000000 0000 0
Q ss_pred CCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHH----------HHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEe
Q 041902 172 PGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQME----------AIVEETDPKILVNTFDALEAETLRAIDKFNMIAI 241 (470)
Q Consensus 172 p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~v 241 (470)
+.+ +...... . .. .......+.+... .+.....+..+..+.+.|+++...+ ..+++++
T Consensus 138 ~~~--~~~~~~~---~----~~-~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~~~~~~ 205 (392)
T TIGR01426 138 EGS--AEEGAIA---E----RG-LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETF--DDSFTFV 205 (392)
T ss_pred hhh--hhhhccc---c----ch-hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCcccc--CCCeEEE
Confidence 000 0000000 0 00 0000011111111 0111100345666666676543222 2359999
Q ss_pred ccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCC
Q 041902 242 GPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENK 321 (470)
Q Consensus 242 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~ 321 (470)
||+..... +...|....+++++||||+||+.......+..+++++...+.+++|..+.+ .
T Consensus 206 Gp~~~~~~------------------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~-~- 265 (392)
T TIGR01426 206 GPCIGDRK------------------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG-V- 265 (392)
T ss_pred CCCCCCcc------------------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC-C-
Confidence 99876511 111266666678999999999876666688889999999998888887654 1
Q ss_pred CCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhh
Q 041902 322 DKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFC 401 (470)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~ 401 (470)
....+ ...++|+.+.+|+|+.++|+++++ +|||||+||++||+++|+|+|++|...||+.||+++++ +
T Consensus 266 --------~~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~ 333 (392)
T TIGR01426 266 --------DPADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-L 333 (392)
T ss_pred --------ChhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-C
Confidence 11122 136789999999999999999998 99999999999999999999999999999999999998 9
Q ss_pred cceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 402 KTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 402 GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
|+|..+.. ..++.++|.++|+++|. |++|+++++++++.+++. +...++.+.+.+
T Consensus 334 g~g~~l~~---~~~~~~~l~~ai~~~l~-~~~~~~~~~~l~~~~~~~----~~~~~aa~~i~~ 388 (392)
T TIGR01426 334 GLGRHLPP---EEVTAEKLREAVLAVLS-DPRYAERLRKMRAEIREA----GGARRAADEIEG 388 (392)
T ss_pred CCEEEecc---ccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHc----CCHHHHHHHHHH
Confidence 99999986 68999999999999999 999999999999999863 444444444433
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.9e-46 Score=386.70 Aligned_cols=397 Identities=21% Similarity=0.319 Sum_probs=226.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCC--CCCchhhHH-
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSK--QNDPRRYVS- 88 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~--~~~~~~~~~- 88 (470)
|||++|+ +.+|+.++..|+++|++|||+||++++.... .+..... .++++..++...+...... .+.....+.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPSKP--SNIRFETYPDPYPEEEFEEIFPEFISKFFSE 77 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T--------S-CCEEEE-----TT------TTHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccccc--cceeeEEEcCCcchHHHhhhhHHHHHHHhhh
Confidence 6788885 7899999999999999999999999876432 2211111 5677777765544322111 100000000
Q ss_pred -----HH---H-------HHhHHHHH------HHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHH
Q 041902 89 -----EF---K-------RRSSEALT------EIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVF 147 (470)
Q Consensus 89 -----~~---~-------~~~~~~~~------~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~ 147 (470)
.+ . ......++ ++++.++. .++|++|+|.+..|+..+|+.+|+|.+.+.+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~---~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~-- 152 (500)
T PF00201_consen 78 SSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS---EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPM-- 152 (500)
T ss_dssp HCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH---HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSC--
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---hccccceEeeccchhHHHHHHhcCCeEEEeccccc--
Confidence 00 0 00111111 11122222 35999999998889999999999999864322110
Q ss_pred HHHHHhhhccC-CccccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHH-------------------H
Q 041902 148 DVYYYYFYGYG-DLIEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQM-------------------E 207 (470)
Q Consensus 148 ~~~~~~~~~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-------------------~ 207 (470)
....... +.|.+ +.+.|.. .....+-+.+++|..|.... .......+.+ +
T Consensus 153 ----~~~~~~~~g~p~~----psyvP~~-~s~~~~~msf~~Ri~N~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (500)
T PF00201_consen 153 ----YDLSSFSGGVPSP----PSYVPSM-FSDFSDRMSFWQRIKNFLFY-LYFRFIFRYFFSPQDKLYKKYFGFPFSFRE 222 (500)
T ss_dssp ----SCCTCCTSCCCTS----TTSTTCB-CCCSGTTSSSST--TTSHHH-HHHHHHHHHGGGS-TTS-EEESS-GGGCHH
T ss_pred ----chhhhhccCCCCC----hHHhccc-cccCCCccchhhhhhhhhhh-hhhccccccchhhHHHHHhhhcccccccHH
Confidence 0000001 11211 2223332 12234556666665443221 1111111110 1
Q ss_pred HHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEec
Q 041902 208 AIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFG 287 (470)
Q Consensus 208 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~G 287 (470)
.+... ...++|+.+.++.+.. .+ +++.++|++...... + .+.++..|++...++++||||||
T Consensus 223 ~~~~~--~l~l~ns~~~ld~prp-~~--p~v~~vGgl~~~~~~------------~-l~~~~~~~~~~~~~~~vv~vsfG 284 (500)
T PF00201_consen 223 LLSNA--SLVLINSHPSLDFPRP-LL--PNVVEVGGLHIKPAK------------P-LPEELWNFLDSSGKKGVVYVSFG 284 (500)
T ss_dssp HHHHH--HHCCSSTEEE----HH-HH--CTSTTGCGC-S----------------T-CHHHHHHHTSTTTTTEEEEEE-T
T ss_pred HHHHH--HHHhhhccccCcCCcc-hh--hcccccCcccccccc------------c-cccccchhhhccCCCCEEEEecC
Confidence 12222 4555666666665432 22 368888988665222 2 55889999998567789999999
Q ss_pred cccc-CCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceecc
Q 041902 288 TICV-LEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHC 366 (470)
Q Consensus 288 S~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHG 366 (470)
|+.. ++.+..+.++++++..+.+|||+.... ... .+++|+++++|+||.+||.|+++++|||||
T Consensus 285 s~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-~~~--------------~l~~n~~~~~W~PQ~~lL~hp~v~~fitHg 349 (500)
T PF00201_consen 285 SIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-PPE--------------NLPKNVLIVKWLPQNDLLAHPRVKLFITHG 349 (500)
T ss_dssp SSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-HGC--------------HHHTTEEEESS--HHHHHTSTTEEEEEES-
T ss_pred cccchhHHHHHHHHHHHHhhCCCccccccccc-ccc--------------cccceEEEeccccchhhhhcccceeeeecc
Confidence 9875 344458889999999999999998754 111 356899999999999999999999999999
Q ss_pred CchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 041902 367 GWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAR 446 (470)
Q Consensus 367 G~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~ 446 (470)
|+||++||+++|||||++|+++||+.||+++++ .|+|+.++. .++|.++|.++|+++|+ |++|++||+++++.++
T Consensus 350 G~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai~~vl~-~~~y~~~a~~ls~~~~ 424 (500)
T PF00201_consen 350 GLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDK---NDLTEEELRAAIREVLE-NPSYKENAKRLSSLFR 424 (500)
T ss_dssp -HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGG---GC-SHHHHHHHHHHHHH-SHHHHHHHHHHHHTTT
T ss_pred ccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEe---cCCcHHHHHHHHHHHHh-hhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 999999998 78999999999999999 9999999999999998
Q ss_pred HHHhcCCCcHHHHHHHHHHhhc
Q 041902 447 EAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
+. .-++.+.+..++|.+.+
T Consensus 425 ~~---p~~p~~~~~~~ie~v~~ 443 (500)
T PF00201_consen 425 DR---PISPLERAVWWIEYVAR 443 (500)
T ss_dssp ----------------------
T ss_pred cC---CCCHHHHHHHHHHHHHh
Confidence 53 45555666666666544
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=2.6e-43 Score=355.79 Aligned_cols=373 Identities=17% Similarity=0.189 Sum_probs=251.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCC----------C
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSK----------Q 80 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~----------~ 80 (470)
|||+|+++|+.||++|+++||++|++|||+|+|++++.+...+ +. .|++|+++++......... .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v-~~----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLV-EA----AGLEFVPVGGDPDELLASPERNAGLLLLGP 75 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHH-HH----cCCceeeCCCCHHHHHhhhhhcccccccch
Confidence 8999999999999999999999999999999999999999999 87 8999999976432211110 0
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCc
Q 041902 81 NDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDL 160 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~ 160 (470)
.........+.......++++++.++. ++||+||+|.+.+++..+|+++|||++.+++++......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~----------- 141 (401)
T cd03784 76 GLLLGALRLLRREAEAMLDDLVAAARD---WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA----------- 141 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc-----------
Confidence 010223334445556666666666544 679999999988899999999999999998765421100
Q ss_pred cccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhH-----HHHHHHHHHHHHHhc--c---------CCeEEEcchHh
Q 041902 161 IEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSF-----ILTCFKEQMEAIVEE--T---------DPKILVNTFDA 224 (470)
Q Consensus 161 p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~-----~~~~~~~~~~~~~~~--~---------~~~~l~~~~~~ 224 (470)
.+ |++ ... |...+.. ............++. . .+..+....+.
T Consensus 142 ----------~~--~~~------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~ 199 (401)
T cd03784 142 ----------FP--PPL------GRA----NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPA 199 (401)
T ss_pred ----------CC--Ccc------chH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcc
Confidence 00 000 000 0000000 001111111111111 0 01111111111
Q ss_pred hhHHHHHHhcCCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCC-HHHHHHHHHH
Q 041902 225 LEAETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLE-KRQVEEIARG 303 (470)
Q Consensus 225 l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~-~~~~~~~~~a 303 (470)
+.++..++ .....++|..+.....+ .+ .+.++..|++. ++++||||+||+.... ...+..++++
T Consensus 200 ~~~~~~~~--~~~~~~~g~~~~~~~~~---------~~--~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a 264 (401)
T cd03784 200 VLPPPPDW--PRFDLVTGYGFRDVPYN---------GP--PPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEA 264 (401)
T ss_pred cCCCCCCc--cccCcEeCCCCCCCCCC---------CC--CCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHH
Confidence 11110011 11244554222210000 01 12677888865 4679999999988644 4567889999
Q ss_pred HHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEee
Q 041902 304 LLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVA 383 (470)
Q Consensus 304 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~ 383 (470)
+...+.++||.++.. ... . ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|+
T Consensus 265 ~~~~~~~~i~~~g~~-~~~------~------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~ 329 (401)
T cd03784 265 VATLGQRAILSLGWG-GLG------A------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLV 329 (401)
T ss_pred HHHcCCeEEEEccCc-ccc------c------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEe
Confidence 999889999988765 221 1 145789999999999999999999 9999999999999999999999
Q ss_pred ccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 041902 384 FPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFV 463 (470)
Q Consensus 384 ~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (470)
+|+..||+.||+++++ +|+|+.+.. .+++.++|.++++++++ ++ +++++++.++.+++ ..+...+.++|
T Consensus 330 ~P~~~dQ~~~a~~~~~-~G~g~~l~~---~~~~~~~l~~al~~~l~-~~-~~~~~~~~~~~~~~-----~~g~~~~~~~i 398 (401)
T cd03784 330 VPFFGDQPFWAARVAE-LGAGPALDP---RELTAERLAAALRRLLD-PP-SRRRAAALLRRIRE-----EDGVPSAADVI 398 (401)
T ss_pred eCCCCCcHHHHHHHHH-CCCCCCCCc---ccCCHHHHHHHHHHHhC-HH-HHHHHHHHHHHHHh-----ccCHHHHHHHH
Confidence 9999999999999998 999999986 66899999999999999 65 55667777777654 34445555555
Q ss_pred HH
Q 041902 464 DD 465 (470)
Q Consensus 464 ~~ 465 (470)
+.
T Consensus 399 e~ 400 (401)
T cd03784 399 ER 400 (401)
T ss_pred hh
Confidence 43
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-42 Score=340.18 Aligned_cols=389 Identities=19% Similarity=0.246 Sum_probs=246.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCC-CCCCCCCC-CCCchhhH
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDG-YDDGFNSK-QNDPRRYV 87 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~-~~~~~~~~-~~~~~~~~ 87 (470)
+|||+|+..|+.||++|+++||++|.++||+|+|++++.+.+.+ ++ .|+.|..++.. ........ .+....+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~v-e~----ag~~f~~~~~~~~~~~~~~~~~~~~~~~~ 75 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFV-EA----AGLAFVAYPIRDSELATEDGKFAGVKSFR 75 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHH-HH----hCcceeeccccCChhhhhhhhhhccchhH
Confidence 58999999999999999999999999999999999999999999 88 88778877643 11111111 11101111
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCC
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVND 167 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 167 (470)
. ..........++++.+.+ ..+|+|+.|...+.+ .+++.+++|++.......+....... +.+.-...+
T Consensus 76 ~-~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 144 (406)
T COG1819 76 R-LLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL------PLPPVGIAG 144 (406)
T ss_pred H-HhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc------Ccccccccc
Confidence 1 222233333344444443 469999999665544 89999999998754443221111100 000000000
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCC-eEEEcchHhhhHHHHHHh----c--CCCeeE
Q 041902 168 LIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDP-KILVNTFDALEAETLRAI----D--KFNMIA 240 (470)
Q Consensus 168 ~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~----~--~~~~~~ 240 (470)
....+..+ +.. .+..... ..++. ......+....+....++ ..+..+.+.++....+.. . .....+
T Consensus 145 ~~~~~~~~-~~~-~~~~~~~----~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 217 (406)
T COG1819 145 KLPIPLYP-LPP-RLVRPLI----FARSW-LPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRLPFIGPY 217 (406)
T ss_pred cccccccc-cCh-hhccccc----cchhh-hhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCCCCCcCc
Confidence 00011000 000 0000000 01100 000000000000000000 000011111111110000 0 011334
Q ss_pred eccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Q 041902 241 IGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHEN 320 (470)
Q Consensus 241 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 320 (470)
+||+.... ..++..| ...++++||+|+||+... .++++.+++++...+.++|+.+... .
T Consensus 218 ~~~~~~~~-----------------~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~-~ 276 (406)
T COG1819 218 IGPLLGEA-----------------ANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA-R 276 (406)
T ss_pred cccccccc-----------------cccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc-c
Confidence 44444331 1333334 334678999999999976 8899999999999999999987642 1
Q ss_pred CCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhh
Q 041902 321 KDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDF 400 (470)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~ 400 (470)
. -...+|.|+++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||.|+++
T Consensus 277 --------~----~~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~- 341 (406)
T COG1819 277 --------D----TLVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE- 341 (406)
T ss_pred --------c----ccccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-
Confidence 1 11157899999999999999999999 99999999999999999999999999999999999998
Q ss_pred hcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 401 CKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 401 ~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
+|+|..+.. ..++.+.|+++|+++|+ +++|+++++++++.+++. + +.+.+.++|+.+
T Consensus 342 ~G~G~~l~~---~~l~~~~l~~av~~vL~-~~~~~~~~~~~~~~~~~~----~-g~~~~a~~le~~ 398 (406)
T COG1819 342 LGAGIALPF---EELTEERLRAAVNEVLA-DDSYRRAAERLAEEFKEE----D-GPAKAADLLEEF 398 (406)
T ss_pred cCCceecCc---ccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHhhhc----c-cHHHHHHHHHHH
Confidence 999999997 78999999999999999 999999999999999974 2 255566666654
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.3e-38 Score=328.43 Aligned_cols=402 Identities=26% Similarity=0.383 Sum_probs=255.4
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCC--------ceEEEcCCCCCCCCCCCC-
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDG--------LSFASFSDGYDDGFNSKQ- 80 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g--------~~~~~i~~~~~~~~~~~~- 80 (470)
+.+++++++|++||++|++.+|++|+++||+||++++....... ........ +.+...+++++.......
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKL-SKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhccc-CCcccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 56889999999999999999999999999999999988766655 22000001 111111122222111100
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcC-CCeEEEechhhHHHHHHHHhhhccCC
Q 041902 81 NDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYH-LPSALLWIQPALVFDVYYYYFYGYGD 159 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~g-iP~i~~~~~~~~~~~~~~~~~~~~~~ 159 (470)
.. ......+...+...+.+...........++|++|+|.+..+...++...+ ++...+++.++.......+....+
T Consensus 84 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~-- 160 (496)
T KOG1192|consen 84 DI-SESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSY-- 160 (496)
T ss_pred HH-HHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccc--
Confidence 01 11133444455555555444433222033999999987667777776664 998888877766555444333211
Q ss_pred ccccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHH---------HHH---------------HHHhccCC
Q 041902 160 LIEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKE---------QME---------------AIVEETDP 215 (470)
Q Consensus 160 ~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~---------~~~---------------~~~~~~~~ 215 (470)
.|........+.+.+..+..|.. .......... ... ..... .
T Consensus 161 -----------~p~~~~~~~~~~~~~~~~~~n~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~ 226 (496)
T KOG1192|consen 161 -----------VPSPFSLSSGDDMSFPERVPNLI-KKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNA--S 226 (496)
T ss_pred -----------cCcccCccccccCcHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcC--e
Confidence 11110000001122222211000 0000000000 000 00111 2
Q ss_pred eEEEcchHhhhHHHHHHhcCCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCC--ceEEEEecccc---
Q 041902 216 KILVNTFDALEAETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKS--SVIYVAFGTIC--- 290 (470)
Q Consensus 216 ~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~vV~vs~GS~~--- 290 (470)
...+++...++.+.... ..++++|||+....... ....+.+|++..+.. ++|||||||+.
T Consensus 227 ~~~ln~~~~~~~~~~~~--~~~v~~IG~l~~~~~~~-------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~ 291 (496)
T KOG1192|consen 227 FIFLNSNPLLDFEPRPL--LPKVIPIGPLHVKDSKQ-------------KSPLPLEWLDILDESRHSVVYISFGSMVNSA 291 (496)
T ss_pred EEEEccCcccCCCCCCC--CCCceEECcEEecCccc-------------cccccHHHHHHHhhccCCeEEEECCcccccc
Confidence 33344433333211111 34699999999872110 101456677765554 89999999998
Q ss_pred cCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhh-ccccccccceeccCc
Q 041902 291 VLEKRQVEEIARGLLDS-GHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEV-LSHEAVGCFVTHCGW 368 (470)
Q Consensus 291 ~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~v-l~~~~v~~~ItHGG~ 368 (470)
.++.++...++.+++.. +..|+|+.... ... .+++++.++.++|+....|+||.++ |+|+++++||||||+
T Consensus 292 ~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~~------~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~ 364 (496)
T KOG1192|consen 292 DLPEEQKKELAKALESLQGVTFLWKYRPD-DSI------YFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGW 364 (496)
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEEecCC-cch------hhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcc
Confidence 78999999999999999 88899999865 222 2233332112457888899999998 699999999999999
Q ss_pred hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 041902 369 NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREA 448 (470)
Q Consensus 369 gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~ 448 (470)
|||+|++++|||||++|+++||+.||+++++ .|.|..+.+ .+.+...+.+++..++. +++|+++++++++.+++
T Consensus 365 nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~---~~~~~~~~~~~~~~il~-~~~y~~~~~~l~~~~~~- 438 (496)
T KOG1192|consen 365 NSTLESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDK---RDLVSEELLEAIKEILE-NEEYKEAAKRLSEILRD- 438 (496)
T ss_pred cHHHHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEeh---hhcCcHHHHHHHHHHHc-ChHHHHHHHHHHHHHHc-
Confidence 9999999999999999999999999999999 888888876 66777669999999999 99999999999999874
Q ss_pred HhcCCCcHHHHH
Q 041902 449 AKQGGSSYKNLK 460 (470)
Q Consensus 449 ~~~~~~~~~~~~ 460 (470)
...++ ..+.
T Consensus 439 --~p~~~-~~~~ 447 (496)
T KOG1192|consen 439 --QPISP-ELAV 447 (496)
T ss_pred --CCCCH-HHHH
Confidence 24444 4444
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=3e-25 Score=216.99 Aligned_cols=306 Identities=17% Similarity=0.201 Sum_probs=198.8
Q ss_pred CEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHH
Q 041902 11 PHFLLVTFP-AQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 11 ~~il~~~~~-~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (470)
|||+|...+ +.||+.++++||++| +||+|+|++.....+.+ +. . +.+..+++-........-+. ...+..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~-~~----~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 71 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFL-KP----R-FPVREIPGLGPIQENGRLDR-WKTVRN 71 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHh-cc----c-cCEEEccCceEeccCCccch-HHHHHH
Confidence 899998886 789999999999999 59999999998777666 43 3 66766753222211111111 111111
Q ss_pred H---HHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 90 F---KRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 90 ~---~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
. .......++++++.+.. .+||+||+| +.+.+..+|+..|||++.+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~l~~---~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~-------------------- 127 (318)
T PF13528_consen 72 NIRWLARLARRIRREIRWLRE---FRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFL-------------------- 127 (318)
T ss_pred HHHhhHHHHHHHHHHHHHHHh---cCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHcc--------------------
Confidence 1 11234455555555555 579999999 45567899999999999886643210
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHH--HHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccc
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEA--IVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPL 244 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl 244 (470)
.+.. .. .........+.+.... .... +..+.-++...... ..+..++||+
T Consensus 128 ----~~~~----------~~------~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~------~~~~~~~~p~ 179 (318)
T PF13528_consen 128 ----HPNF----------WL------PWDQDFGRLIERYIDRYHFPPA--DRRLALSFYPPLPP------FFRVPFVGPI 179 (318)
T ss_pred ----cccC----------Cc------chhhhHHHHHHHhhhhccCCcc--cceecCCccccccc------cccccccCch
Confidence 0000 00 0000011122222221 1222 44444444311110 2346678888
Q ss_pred cCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEecCCCCCC
Q 041902 245 VASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSG-HPFLWVIREHENKDK 323 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~ 323 (470)
....... .. ..+++.|+|++|..... .+++++...+ ..+++. +.. ..+
T Consensus 180 ~~~~~~~---------------------~~-~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~-~~~- 228 (318)
T PF13528_consen 180 IRPEIRE---------------------LP-PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN-AAD- 228 (318)
T ss_pred hcccccc---------------------cC-CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC-ccc-
Confidence 7652110 01 12445799999987643 5566777765 566655 443 101
Q ss_pred CCCchhhhHHHHHHhCCCeEEeecc--ChhhhccccccccceeccCchhhhhhhhcCCcEeeccc--cchhhHHHHHHHh
Q 041902 324 DKGEDDVVMKYKEELNEKGMIVPWC--SQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ--WTDQGTNAKIIVD 399 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~~~nv~v~~~v--p~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~--~~DQ~~nA~rl~~ 399 (470)
..++|+.+..+. ...++|+.|++ +|+|||+||++||+++|+|+|++|. ..||..||+++++
T Consensus 229 -------------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~ 293 (318)
T PF13528_consen 229 -------------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE 293 (318)
T ss_pred -------------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH
Confidence 126899988876 56789988988 9999999999999999999999998 7899999999999
Q ss_pred hhcceeEeeecCCCCcCHHHHHHHHHHH
Q 041902 400 FCKTGVRVKANEEGILESDEIKRCLELV 427 (470)
Q Consensus 400 ~~GvG~~l~~~~~~~~~~~~l~~~i~~v 427 (470)
+|+|+.+.. .+++++.|.+.|+++
T Consensus 294 -~G~~~~~~~---~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 294 -LGLGIVLSQ---EDLTPERLAEFLERL 317 (318)
T ss_pred -CCCeEEccc---ccCCHHHHHHHHhcC
Confidence 999999987 789999999999865
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=3.6e-24 Score=210.81 Aligned_cols=320 Identities=15% Similarity=0.138 Sum_probs=204.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchh-hhcCCCCCCCCceEEEcCCC-CCCCCCCCCCCchhhHHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYR-RMANSPTPEDGLSFASFSDG-YDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~-~v~~~~~~~~g~~~~~i~~~-~~~~~~~~~~~~~~~~~~ 89 (470)
||+|.+.|+.||++|.+++|++|.++||+|.|++...-.+ .+.+. .|+.|..++.. +... .. ...+..
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~----~g~~~~~~~~~~l~~~-----~~-~~~~~~ 72 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK----ENIPYYSISSGKLRRY-----FD-LKNIKD 72 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc----cCCcEEEEeccCcCCC-----ch-HHHHHH
Confidence 6888888999999999999999999999999998765332 23255 78999888732 2110 01 222222
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch--hHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCC
Q 041902 90 FKRRSSEALTEIITGSENQGAQPFTCLVYSLLLP--WTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVND 167 (470)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~--~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 167 (470)
...... .+.+.++.+++ .+||+|++..... .+..+|+.+++|++..-. +
T Consensus 73 ~~~~~~-~~~~~~~i~~~---~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~-n------------------------ 123 (352)
T PRK12446 73 PFLVMK-GVMDAYVRIRK---LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHES-D------------------------ 123 (352)
T ss_pred HHHHHH-HHHHHHHHHHh---cCCCEEEecCchhhHHHHHHHHHcCCCEEEECC-C------------------------
Confidence 222222 22233333444 6799999975333 368889999999987311 0
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccCC
Q 041902 168 LIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVAS 247 (470)
Q Consensus 168 ~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~ 247 (470)
..|++ ..+.. .+.. +.+. .++++-. ..++..++.++|+.+.+
T Consensus 124 --~~~g~---------------------------~nr~~--~~~a--~~v~-~~f~~~~----~~~~~~k~~~tG~Pvr~ 165 (352)
T PRK12446 124 --MTPGL---------------------------ANKIA--LRFA--SKIF-VTFEEAA----KHLPKEKVIYTGSPVRE 165 (352)
T ss_pred --CCccH---------------------------HHHHH--HHhh--CEEE-EEccchh----hhCCCCCeEEECCcCCc
Confidence 12221 01111 1222 3332 3332211 22222368899988876
Q ss_pred CccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHH-HHHHHHHHHHhCCCCEEEEEecCCCCCCCCC
Q 041902 248 ALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKR-QVEEIARGLLDSGHPFLWVIREHENKDKDKG 326 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~-~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 326 (470)
..... ..+.....+.-.+++++|+|..||.+....+ .+..++..+.. +.+++|.++..
T Consensus 166 ~~~~~------------~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~-------- 224 (352)
T PRK12446 166 EVLKG------------NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG-------- 224 (352)
T ss_pred ccccc------------cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc--------
Confidence 32110 1122222233345678999999999854432 23334444422 36777777654
Q ss_pred chhhhHHHHHHhCCCeEEeecc-C-hhhhccccccccceeccCchhhhhhhhcCCcEeecccc-----chhhHHHHHHHh
Q 041902 327 EDDVVMKYKEELNEKGMIVPWC-S-QVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQW-----TDQGTNAKIIVD 399 (470)
Q Consensus 327 ~~~~~~~~~~~~~~nv~v~~~v-p-~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~-----~DQ~~nA~rl~~ 399 (470)
.+..... .. .++.+.+|+ + ..++|+.+|+ +|||||.+|++|++++|+|+|++|+. .||..||..+++
T Consensus 225 --~~~~~~~-~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~ 298 (352)
T PRK12446 225 --NLDDSLQ-NK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER 298 (352)
T ss_pred --hHHHHHh-hc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH
Confidence 2221111 11 355566887 4 4679999998 99999999999999999999999974 489999999999
Q ss_pred hhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH-HHHHHHHH
Q 041902 400 FCKTGVRVKANEEGILESDEIKRCLELVMGEGD-EFRGNSLK 440 (470)
Q Consensus 400 ~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~-~~r~~a~~ 440 (470)
.|+|..+.. .+++++.|.+++.+++. |+ .|++++++
T Consensus 299 -~g~~~~l~~---~~~~~~~l~~~l~~ll~-~~~~~~~~~~~ 335 (352)
T PRK12446 299 -QGYASVLYE---EDVTVNSLIKHVEELSH-NNEKYKTALKK 335 (352)
T ss_pred -CCCEEEcch---hcCCHHHHHHHHHHHHc-CHHHHHHHHHH
Confidence 999999975 78999999999999998 76 45544433
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=1.5e-22 Score=197.81 Aligned_cols=307 Identities=15% Similarity=0.141 Sum_probs=179.5
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCce-EEEcCCCCCCCCCCCCCCchhhHHH
Q 041902 12 HFLLVTFP-AQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLS-FASFSDGYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 12 ~il~~~~~-~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (470)
||+|...+ +.||+.|.++|+++|++ ||+|+|+++......+ +. .|+. +..+|. +.....+ +.. ....+
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~-~~----~~~~~~~~~p~-~~~~~~~-~~~--~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYI-SK----YGFKVFETFPG-IKLKGED-GKV--NIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhh-hh----hcCcceeccCC-ceEeecC-CcC--cHHHH
Confidence 57775554 45999999999999999 9999999988855555 55 5555 333331 1111111 111 12222
Q ss_pred HH---HHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 90 FK---RRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 90 ~~---~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
.. ......+.+..+.+++ .+||+||+| +.+.+..+|+.+|||++.+..+...
T Consensus 71 l~~~~~~~~~~~~~~~~~l~~---~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~--------------------- 125 (321)
T TIGR00661 71 LRNKEYSPKKAIRREINIIRE---YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT--------------------- 125 (321)
T ss_pred HHhhccccHHHHHHHHHHHHh---cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---------------------
Confidence 21 1112334444454444 679999999 6667899999999999987553210
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCee--Eeccc
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMI--AIGPL 244 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~vGpl 244 (470)
..|+. . + ......+ .....+.... +....+.++....- .++.. +.+|.
T Consensus 126 ---~~~~~----~--------~-----~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~------~p~~~~~~~~~~ 175 (321)
T TIGR00661 126 ---RYPLK----T--------D-----LIVYPTM---AALRIFNERC-ERFIVPDYPFPYTI------CPKIIKNMEGPL 175 (321)
T ss_pred ---cCCcc----c--------c-----hhHHHHH---HHHHHhcccc-ceEeeecCCCCCCC------CccccccCCCcc
Confidence 01111 0 0 0011111 1111111110 23333322111100 00000 00111
Q ss_pred cCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCC
Q 041902 245 VASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKD 324 (470)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 324 (470)
.+.....|.. .+++.|+|.+||... ..++.++...+ .+.+++... +
T Consensus 176 --------------------~~~~~~~~~~--~~~~~iLv~~g~~~~------~~l~~~l~~~~-~~~~i~~~~-~---- 221 (321)
T TIGR00661 176 --------------------IRYDVDDVDN--YGEDYILVYIGFEYR------YKILELLGKIA-NVKFVCYSY-E---- 221 (321)
T ss_pred --------------------cchhhhcccc--CCCCcEEEECCcCCH------HHHHHHHHhCC-CeEEEEeCC-C----
Confidence 1112222322 234568888888442 34466666654 333433322 1
Q ss_pred CCchhhhHHHHHHhCCCeEEeeccC--hhhhccccccccceeccCchhhhhhhhcCCcEeeccccc--hhhHHHHHHHhh
Q 041902 325 KGEDDVVMKYKEELNEKGMIVPWCS--QVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWT--DQGTNAKIIVDF 400 (470)
Q Consensus 325 ~~~~~~~~~~~~~~~~nv~v~~~vp--~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~--DQ~~nA~rl~~~ 400 (470)
.... .+++|+.+..|.| ....|+.|++ +|||||.+|++||+++|+|++++|... ||..||+.+++
T Consensus 222 ----~~~~----~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~- 290 (321)
T TIGR00661 222 ----VAKN----SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED- 290 (321)
T ss_pred ----CCcc----ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-
Confidence 1111 3468999999997 5678888888 999999999999999999999999854 89999999998
Q ss_pred hcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHH
Q 041902 401 CKTGVRVKANEEGILESDEIKRCLELVMGEGDEFR 435 (470)
Q Consensus 401 ~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r 435 (470)
.|+|+.+.. .++ ++.+++..+++ ++.|+
T Consensus 291 ~g~~~~l~~---~~~---~~~~~~~~~~~-~~~~~ 318 (321)
T TIGR00661 291 LGCGIALEY---KEL---RLLEAILDIRN-MKRYK 318 (321)
T ss_pred CCCEEEcCh---hhH---HHHHHHHhccc-ccccc
Confidence 999999975 444 77778888888 76653
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=2.3e-20 Score=181.85 Aligned_cols=341 Identities=15% Similarity=0.151 Sum_probs=206.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCcc-chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGT-RVTFATTIF-AYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh-~V~~~~~~~-~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|+|++...++.||++|.++|+++|.++|+ +|.++.+.. ....+.+. .++.+..|+.+........ ..+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~----~~~~~~~I~~~~~~~~~~~-----~~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ----YGIEFELIPSGGLRRKGSL-----KLLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccc----cCceEEEEecccccccCcH-----HHHH
Confidence 57899999999999999999999999999 588885544 44444355 7888888875543332111 1111
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc--hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL--PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
..+... ..+.+..+.+++ .+||+||+...+ ..+..+|..+|||.++.
T Consensus 72 ~~~~~~-~~~~~a~~il~~---~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih--------------------------- 120 (357)
T COG0707 72 APFKLL-KGVLQARKILKK---LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH--------------------------- 120 (357)
T ss_pred HHHHHH-HHHHHHHHHHHH---cCCCEEEecCCccccHHHHHHHhCCCCEEEE---------------------------
Confidence 112211 112233333333 679999996443 35677888899999983
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccC
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVA 246 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 246 (470)
+....||+ .++ ... +.+ +.+ ..+++..+ ..++..++.++|-...
T Consensus 121 Eqn~~~G~-----------------ank----------~~~--~~a--~~V-~~~f~~~~----~~~~~~~~~~tG~Pvr 164 (357)
T COG0707 121 EQNAVPGL-----------------ANK----------ILS--KFA--KKV-ASAFPKLE----AGVKPENVVVTGIPVR 164 (357)
T ss_pred ecCCCcch-----------------hHH----------HhH--Hhh--cee-eecccccc----ccCCCCceEEecCccc
Confidence 12224443 000 000 111 222 22222211 1111224778886555
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCH-HHHHHHHHHHHhCCCCEEEEEecCCCCCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEK-RQVEEIARGLLDSGHPFLWVIREHENKDKDK 325 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 325 (470)
.+-.. ++..-... +...++++|+|.-||.+.... +.+..+...+.. +..++...+..
T Consensus 165 ~~~~~-------------~~~~~~~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~------- 222 (357)
T COG0707 165 PEFEE-------------LPAAEVRK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN------- 222 (357)
T ss_pred HHhhc-------------cchhhhhh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-------
Confidence 41110 00111111 122267899999999985332 223333333333 35566655544
Q ss_pred CchhhhHHHHHHhC-CC-eEEeeccCh-hhhccccccccceeccCchhhhhhhhcCCcEeecccc----chhhHHHHHHH
Q 041902 326 GEDDVVMKYKEELN-EK-GMIVPWCSQ-VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQW----TDQGTNAKIIV 398 (470)
Q Consensus 326 ~~~~~~~~~~~~~~-~n-v~v~~~vp~-~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~----~DQ~~nA~rl~ 398 (470)
. .....+... .+ +.+.+|+.. ..+++.+|+ +||++|.+|+.|+++.|+|++.+|.- .+|..||..++
T Consensus 223 ---~-~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~ 296 (357)
T COG0707 223 ---D-LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLE 296 (357)
T ss_pred ---h-HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHH
Confidence 2 122222222 23 666788865 669988888 99999999999999999999999964 38999999999
Q ss_pred hhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 399 DFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 399 ~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+ .|.|..++. .++|.+.+.+.|.++++ ++ ++..++++..++. ...+....+.+.+..
T Consensus 297 ~-~gaa~~i~~---~~lt~~~l~~~i~~l~~-~~---~~l~~m~~~a~~~--~~p~aa~~i~~~~~~ 353 (357)
T COG0707 297 K-AGAALVIRQ---SELTPEKLAELILRLLS-NP---EKLKAMAENAKKL--GKPDAAERIADLLLA 353 (357)
T ss_pred h-CCCEEEecc---ccCCHHHHHHHHHHHhc-CH---HHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 9 999999996 78999999999999999 63 4445555544432 123333444444443
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=9.7e-19 Score=173.85 Aligned_cols=343 Identities=15% Similarity=0.104 Sum_probs=208.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc--hhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA--YRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~--~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||+|...+..||...++.|++.|.++||+|++++.+.. .... +. .|++++.++..-... .+. ...+.
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~-~~----~g~~~~~~~~~~~~~----~~~-~~~l~ 71 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLV-PK----AGIEFHFIPSGGLRR----KGS-LANLK 71 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcc-cc----CCCcEEEEeccCcCC----CCh-HHHHH
Confidence 899999998999999999999999999999999988653 2233 33 578887775321110 111 11111
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCC--chhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLL--LPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~--~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
.... ....+..+.+.+++ .+||+|++... ...+..+++..++|++..... .
T Consensus 72 ~~~~-~~~~~~~~~~~ik~---~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~-~---------------------- 124 (357)
T PRK00726 72 APFK-LLKGVLQARKILKR---FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQN-A---------------------- 124 (357)
T ss_pred HHHH-HHHHHHHHHHHHHh---cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCC-C----------------------
Confidence 1111 12333344444443 56999999963 234566677899999863100 0
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccC
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVA 246 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 246 (470)
.+ . ...+.. .+.+ +.++..+...+.. .+..++.++|+.+.
T Consensus 125 ----~~--------------------~-------~~~r~~--~~~~--d~ii~~~~~~~~~-----~~~~~i~vi~n~v~ 164 (357)
T PRK00726 125 ----VP--------------------G-------LANKLL--ARFA--KKVATAFPGAFPE-----FFKPKAVVTGNPVR 164 (357)
T ss_pred ----Cc--------------------c-------HHHHHH--HHHh--chheECchhhhhc-----cCCCCEEEECCCCC
Confidence 00 0 000111 1223 4444443322211 11346888887765
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC--CEEEEEecCCCCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH--PFLWVIREHENKDKD 324 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~ 324 (470)
...... . ..-.. +...++.++|++..|+... ......+.+++..... .+++.++.+ ..+
T Consensus 165 ~~~~~~------------~-~~~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g-~~~-- 225 (357)
T PRK00726 165 EEILAL------------A-APPAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKG-DLE-- 225 (357)
T ss_pred hHhhcc------------c-chhhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCC-cHH--
Confidence 521110 0 00011 1222345577766666432 1222333355555432 344555544 211
Q ss_pred CCchhhhHHHHHHhCCCeEEeecc-ChhhhccccccccceeccCchhhhhhhhcCCcEeeccc----cchhhHHHHHHHh
Q 041902 325 KGEDDVVMKYKEELNEKGMIVPWC-SQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ----WTDQGTNAKIIVD 399 (470)
Q Consensus 325 ~~~~~~~~~~~~~~~~nv~v~~~v-p~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~----~~DQ~~nA~rl~~ 399 (470)
.+.... + .+-++.+.+|+ +..++++.+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+.+
T Consensus 226 ----~~~~~~-~-~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~ 297 (357)
T PRK00726 226 ----EVRAAY-A-AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVD 297 (357)
T ss_pred ----HHHHHh-h-cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHH
Confidence 222111 1 23347777998 55789999999 9999999999999999999999997 3689999999998
Q ss_pred hhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 400 FCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 400 ~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
.|.|..+.. .+++.+.|.+++.+++. |++++++..+-+.++. ...+..+....+++.+
T Consensus 298 -~~~g~~~~~---~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 298 -AGAALLIPQ---SDLTPEKLAEKLLELLS-DPERLEAMAEAARALG----KPDAAERLADLIEELA 355 (357)
T ss_pred -CCCEEEEEc---ccCCHHHHHHHHHHHHc-CHHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHh
Confidence 999999986 66789999999999999 9887766666554443 3455555555555544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=4.7e-17 Score=161.19 Aligned_cols=325 Identities=16% Similarity=0.141 Sum_probs=195.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch--hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY--RRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~--~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (470)
+|++.+.++.||+...+.|++.|.++||+|++++..... ... +. .|+++..++-.-... ... ...+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~----~~~-~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLV-PK----AGIPLHTIPVGGLRR----KGS-LKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcc-cc----cCCceEEEEecCcCC----CCh-HHHHHH
Confidence 588999999999999999999999999999999875422 112 22 467777765321111 011 122222
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCCccEEEeCCC--chhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCC
Q 041902 90 FKRRSSEALTEIITGSENQGAQPFTCLVYSLL--LPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVND 167 (470)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~--~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 167 (470)
.... ...+..+.+.+++ .+||+|++... ...+..+|...|+|++.... ..
T Consensus 71 ~~~~-~~~~~~~~~~i~~---~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~-~~----------------------- 122 (350)
T cd03785 71 PFKL-LKGVLQARKILKK---FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQ-NA----------------------- 122 (350)
T ss_pred HHHH-HHHHHHHHHHHHh---cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcC-CC-----------------------
Confidence 2111 1122233333333 57999998753 33457778889999885210 00
Q ss_pred cccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccCC
Q 041902 168 LIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVAS 247 (470)
Q Consensus 168 ~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~ 247 (470)
.++ . ..+.. .+.. +.++..+....+. ++..++.++|+.+..
T Consensus 123 ---~~~--------------------~-------~~~~~--~~~~--~~vi~~s~~~~~~-----~~~~~~~~i~n~v~~ 163 (350)
T cd03785 123 ---VPG--------------------L-------ANRLL--ARFA--DRVALSFPETAKY-----FPKDKAVVTGNPVRE 163 (350)
T ss_pred ---Ccc--------------------H-------HHHHH--HHhh--CEEEEcchhhhhc-----CCCCcEEEECCCCch
Confidence 000 0 00111 1223 6666655443332 113467888876554
Q ss_pred CccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCH-HHHHHHHHHHHhCCCCEEEEEecCCCCCCCCC
Q 041902 248 ALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEK-RQVEEIARGLLDSGHPFLWVIREHENKDKDKG 326 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~ 326 (470)
.... + . +. .......+++++|++..|+...... +.+..++..+...+..++++++.+ ..+
T Consensus 164 ~~~~-----------~-~-~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g-~~~---- 224 (350)
T cd03785 164 EILA-----------L-D-RE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG-DLE---- 224 (350)
T ss_pred HHhh-----------h-h-hh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc-cHH----
Confidence 1110 0 0 11 1122223445577776676653211 122233334432333445555544 222
Q ss_pred chhhhHHHHHHhCCCeEEeecc-ChhhhccccccccceeccCchhhhhhhhcCCcEeeccc----cchhhHHHHHHHhhh
Q 041902 327 EDDVVMKYKEELNEKGMIVPWC-SQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ----WTDQGTNAKIIVDFC 401 (470)
Q Consensus 327 ~~~~~~~~~~~~~~nv~v~~~v-p~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~----~~DQ~~nA~rl~~~~ 401 (470)
.+..... ...+|+.+.+|+ +...+|+.+++ +|+++|.+|+.||+.+|+|+|++|. ..+|..|+..+.+ .
T Consensus 225 --~l~~~~~-~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~-~ 298 (350)
T cd03785 225 --EVKKAYE-ELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVK-A 298 (350)
T ss_pred --HHHHHHh-ccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHh-C
Confidence 3322222 124689888998 66789999999 9999999999999999999999985 3579999999998 9
Q ss_pred cceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041902 402 KTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWK 442 (470)
Q Consensus 402 GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~ 442 (470)
|.|..+.. .+.+.++|.++++.++. +++.+++..+-+
T Consensus 299 g~g~~v~~---~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~ 335 (350)
T cd03785 299 GAAVLIPQ---EELTPERLAAALLELLS-DPERLKAMAEAA 335 (350)
T ss_pred CCEEEEec---CCCCHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 99999986 45799999999999999 886555444433
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.75 E-value=1.8e-15 Score=149.72 Aligned_cols=316 Identities=18% Similarity=0.160 Sum_probs=181.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch--hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY--RRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~--~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||+|++.+..||+...+.|+++|.++||+|++++.+... ... +. .|+++..++-.-... ... ...+.
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~-~~----~g~~~~~i~~~~~~~----~~~-~~~l~ 70 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLV-PK----AGIEFYFIPVGGLRR----KGS-FRLIK 70 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccc-cc----CCCceEEEeccCcCC----CCh-HHHHH
Confidence 6999999999999998889999999999999999874421 222 33 577777775321110 111 22222
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc--hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL--PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
..... ...+..+.+.+++ .+||+|++.... ..+..+++.+++|.+.... ..
T Consensus 71 ~~~~~-~~~~~~l~~~i~~---~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~---------------------- 123 (348)
T TIGR01133 71 TPLKL-LKAVFQARRILKK---FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NA---------------------- 123 (348)
T ss_pred HHHHH-HHHHHHHHHHHHh---cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CC----------------------
Confidence 22111 2223334344444 579999998533 2455678889999874210 00
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccC
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVA 246 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 246 (470)
.+ .. ..+.. .+.. +.+++.+...-+. ....++|..+.
T Consensus 124 ----~~--------------------~~-------~~~~~--~~~~--d~ii~~~~~~~~~--------~~~~~i~n~v~ 160 (348)
T TIGR01133 124 ----VP--------------------GL-------TNKLL--SRFA--KKVLISFPGAKDH--------FEAVLVGNPVR 160 (348)
T ss_pred ----Cc--------------------cH-------HHHHH--HHHh--CeeEECchhHhhc--------CCceEEcCCcC
Confidence 00 00 00111 1233 5555544322111 13456665443
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHH---hCCCCEEEEEecCCCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLL---DSGHPFLWVIREHENKDK 323 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~---~~~~~~i~~~~~~~~~~~ 323 (470)
...... . .. .+++...+++++|.+..|+... ....+.+.+++. ..+..+++..+.+
T Consensus 161 ~~~~~~------------~-~~-~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~----- 219 (348)
T TIGR01133 161 QEIRSL------------P-VP-RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKN----- 219 (348)
T ss_pred HHHhcc------------c-ch-hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcc-----
Confidence 311100 0 00 0112222344455554456542 222222333433 3334555444332
Q ss_pred CCCchhhhHHHHHHhCCC--eEEeecc--ChhhhccccccccceeccCchhhhhhhhcCCcEeecccc---chhhHHHHH
Q 041902 324 DKGEDDVVMKYKEELNEK--GMIVPWC--SQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQW---TDQGTNAKI 396 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~~~n--v~v~~~v--p~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~---~DQ~~nA~r 396 (470)
.. +.+.+..... ..++.|. +...+|+.+|+ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..
T Consensus 220 -----~~-~~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~ 291 (348)
T TIGR01133 220 -----DL-EKVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKF 291 (348)
T ss_pred -----hH-HHHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHH
Confidence 11 2222222211 1223333 56779999999 99999988999999999999999863 478889999
Q ss_pred HHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHH
Q 041902 397 IVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 397 l~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~ 440 (470)
+.+ .|.|..+.. ++.+.++|.++++++++ |++.+++..+
T Consensus 292 i~~-~~~G~~~~~---~~~~~~~l~~~i~~ll~-~~~~~~~~~~ 330 (348)
T TIGR01133 292 LED-LGAGLVIRQ---KELLPEKLLEALLKLLL-DPANLEAMAE 330 (348)
T ss_pred HHH-CCCEEEEec---ccCCHHHHHHHHHHHHc-CHHHHHHHHH
Confidence 998 999999876 56789999999999999 8876544333
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.74 E-value=5.6e-16 Score=144.20 Aligned_cols=340 Identities=14% Similarity=0.108 Sum_probs=202.3
Q ss_pred ccCCCCEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCC-CCCC-
Q 041902 6 HRQHQPHFLLVTFP--AQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDG-FNSK- 79 (470)
Q Consensus 6 ~~~~~~~il~~~~~--~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~-~~~~- 79 (470)
.+++.+||+|++.- +.||+-+++.||.+|.+. |.+|+++++.....-..-. .|++|+.+|.-.... .+..
T Consensus 5 ~~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~----~gVd~V~LPsl~k~~~G~~~~ 80 (400)
T COG4671 5 EASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP----AGVDFVKLPSLIKGDNGEYGL 80 (400)
T ss_pred chhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc----ccCceEecCceEecCCCceee
Confidence 46777899999994 558999999999999998 9999999987766555122 789999998532221 1111
Q ss_pred CCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCC
Q 041902 80 QNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGD 159 (470)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~ 159 (470)
.+.... ++.+...-...+....+. .+||++|+|.+ +.| +-.++ .|.. .+.... ..
T Consensus 81 ~d~~~~-l~e~~~~Rs~lil~t~~~------fkPDi~IVd~~-P~G--lr~EL-~ptL-------------~yl~~~-~t 135 (400)
T COG4671 81 VDLDGD-LEETKKLRSQLILSTAET------FKPDIFIVDKF-PFG--LRFEL-LPTL-------------EYLKTT-GT 135 (400)
T ss_pred eecCCC-HHHHHHHHHHHHHHHHHh------cCCCEEEEecc-ccc--hhhhh-hHHH-------------HHHhhc-CC
Confidence 111011 333333222222222222 68999999954 444 11111 1110 011100 00
Q ss_pred ccccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-----
Q 041902 160 LIEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID----- 234 (470)
Q Consensus 160 ~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~----- 234 (470)
-+ -+..++++...... ...+-.....+..+.+. |.+++...+.+..+. ..++
T Consensus 136 -----------~~---vL~lr~i~D~p~~~----~~~w~~~~~~~~I~r~y----D~V~v~GdP~f~d~~-~~~~~~~~i 192 (400)
T COG4671 136 -----------RL---VLGLRSIRDIPQEL----EADWRRAETVRLINRFY----DLVLVYGDPDFYDPL-TEFPFAPAI 192 (400)
T ss_pred -----------cc---eeehHhhhhchhhh----ccchhhhHHHHHHHHhh----eEEEEecCccccChh-hcCCccHhh
Confidence 00 01111221111110 00001111122222222 777877777776533 2222
Q ss_pred CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh-CCCCEEE
Q 041902 235 KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD-SGHPFLW 313 (470)
Q Consensus 235 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~ 313 (470)
..++.|+|.+ ..+ .+... . . |... +.+.-|+||-|-... -.+..+..+.|-.. .+.+-.|
T Consensus 193 ~~k~~ytG~v-q~~-~~~~~-------~--p------~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~ 253 (400)
T COG4671 193 RAKMRYTGFV-QRS-LPHLP-------L--P------PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKW 253 (400)
T ss_pred hhheeEeEEe-ecc-CcCCC-------C--C------CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcce
Confidence 3469999988 332 21100 0 0 1111 333468888887552 23445554444443 4444244
Q ss_pred EEecCCCCCCCCCchhhhHH----HHHHhC--CCeEEeeccC-hhhhccccccccceeccCchhhhhhhhcCCcEeeccc
Q 041902 314 VIREHENKDKDKGEDDVVMK----YKEELN--EKGMIVPWCS-QVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~----~~~~~~--~nv~v~~~vp-~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~ 386 (470)
.+-++ . .+|.. +....+ +++.+..|-. ...++..++. +|+-||+||+||-|.+|||.+++|.
T Consensus 254 ~ivtG-P--------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr 322 (400)
T COG4671 254 LIVTG-P--------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPR 322 (400)
T ss_pred EEEeC-C--------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEecc
Confidence 44444 2 44442 322334 7888888874 5779988888 9999999999999999999999997
Q ss_pred c---chhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH
Q 041902 387 W---TDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD 432 (470)
Q Consensus 387 ~---~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~ 432 (470)
. .||-.-|.|+++ +|+--++.+ ++++++.+.+++...+. .|
T Consensus 323 ~~p~eEQliRA~Rl~~-LGL~dvL~p---e~lt~~~La~al~~~l~-~P 366 (400)
T COG4671 323 AAPREEQLIRAQRLEE-LGLVDVLLP---ENLTPQNLADALKAALA-RP 366 (400)
T ss_pred CCCcHHHHHHHHHHHh-cCcceeeCc---ccCChHHHHHHHHhccc-CC
Confidence 6 499999999998 999999998 88999999999999998 44
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=2.4e-15 Score=150.27 Aligned_cols=351 Identities=12% Similarity=0.000 Sum_probs=201.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC-CCCCCCCCCCCCchhhHHH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD-GYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~-~~~~~~~~~~~~~~~~~~~ 89 (470)
.||+|...++.||++|. +|+++|+++|++|.|++...- .+ +..+.+.++++..++. ++ ...+..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m-~~~g~~~~~~~~~l~v~G~-----------~~~l~~ 70 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RM-AAEGCEVLYSMEELSVMGL-----------REVLGR 70 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HH-HhCcCccccChHHhhhccH-----------HHHHHH
Confidence 48999999999999999 999999999999999975532 33 3300002233333331 11 112221
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc-hh--HHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 90 FKRRSSEALTEIITGSENQGAQPFTCLVYSLLL-PW--TAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~-~~--~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
+.. ....+.++.+.+++ .+||+||.-.+. +. ...+|+.+|||++...+ |
T Consensus 71 ~~~-~~~~~~~~~~~l~~---~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P----------------------- 122 (385)
T TIGR00215 71 LGR-LLKIRKEVVQLAKQ---AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-P----------------------- 122 (385)
T ss_pred HHH-HHHHHHHHHHHHHh---cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-C-----------------------
Confidence 111 22233344444544 679999884432 22 23378899999987421 0
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccC
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVA 246 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 246 (470)
.. |.+. .++. +.+. +.+ +.++.....+.+. .... +.+..++|..+.
T Consensus 123 ------~~--waw~-----------~~~~----r~l~------~~~--d~v~~~~~~e~~~--~~~~-g~~~~~vGnPv~ 168 (385)
T TIGR00215 123 ------QV--WAWR-----------KWRA----KKIE------KAT--DFLLAILPFEKAF--YQKK-NVPCRFVGHPLL 168 (385)
T ss_pred ------cH--hhcC-----------cchH----HHHH------HHH--hHhhccCCCcHHH--HHhc-CCCEEEECCchh
Confidence 00 1000 1111 1111 112 3333332222211 1110 347788996664
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh---C--CCCEEEEEecCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD---S--GHPFLWVIREHENK 321 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~ 321 (470)
+..... .+ ++....+-+.-.+++++|++-.||-...-......+++++.. . +.++++.+... ..
T Consensus 169 ~~~~~~---------~~-~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~-~~ 237 (385)
T TIGR00215 169 DAIPLY---------KP-DRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF-KR 237 (385)
T ss_pred hhcccc---------CC-CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc-hh
Confidence 421100 00 113333223334466788888888764322334445544433 2 23344444332 11
Q ss_pred CCCCCchhhhHHHHHHhC--CCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeec----cccc-------
Q 041902 322 DKDKGEDDVVMKYKEELN--EKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF----PQWT------- 388 (470)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~--~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~----P~~~------- 388 (470)
. +.+ +.+.+... .++....+ ....+++.+|+ +|+-+|..|+ |++.+|+|+|++ |+..
T Consensus 238 ~-----~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~ 307 (385)
T TIGR00215 238 R-----LQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLV 307 (385)
T ss_pred H-----HHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHH
Confidence 1 011 12222222 23333322 34568988998 9999999888 999999999999 7642
Q ss_pred --hhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 041902 389 --DQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD----EFRGNSLKWKDLAREAAKQGGSSYKNLKAF 462 (470)
Q Consensus 389 --DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~----~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (470)
.|..|+..+++ .++...+.- .+.|++.|.+.+.++|. |+ +++++.++--.++++...+.|.+.++...+
T Consensus 308 ~~~~~~~~nil~~-~~~~pel~q---~~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 308 KTDYISLPNILAN-RLLVPELLQ---EECTPHPLAIALLLLLE-NGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred cCCeeeccHHhcC-CccchhhcC---CCCCHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 37789999998 999999875 78999999999999999 88 777777666666666666667777777666
Q ss_pred HH
Q 041902 463 VD 464 (470)
Q Consensus 463 ~~ 464 (470)
++
T Consensus 383 ~~ 384 (385)
T TIGR00215 383 LE 384 (385)
T ss_pred hh
Confidence 54
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=1.9e-14 Score=144.35 Aligned_cols=163 Identities=15% Similarity=0.203 Sum_probs=110.2
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCchhhhHHHHH---HhCCCeEEeeccCh-h
Q 041902 277 PKSSVIYVAFGTICVLEKRQVEEIARGLLDS-GHPFLWVIREHENKDKDKGEDDVVMKYKE---ELNEKGMIVPWCSQ-V 351 (470)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~nv~v~~~vp~-~ 351 (470)
+++++|++..|+.... ..+..+++++... +.+++++.+.+ + .+.+.+++ ..++|+.+.+|+++ .
T Consensus 200 ~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~-~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~ 268 (380)
T PRK13609 200 PNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN-E--------ALKQSLEDLQETNPDALKVFGYVENID 268 (380)
T ss_pred CCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC-H--------HHHHHHHHHHhcCCCcEEEEechhhHH
Confidence 3556788877887632 2345566666543 45566655533 1 22233322 23468888899987 4
Q ss_pred hhccccccccceeccCchhhhhhhhcCCcEeec-cccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcC
Q 041902 352 EVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF-PQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGE 430 (470)
Q Consensus 352 ~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~-P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~ 430 (470)
.+++.+|+ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+.+ .|.|+... +.++|.+++.+++.
T Consensus 269 ~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~~-------~~~~l~~~i~~ll~- 337 (380)
T PRK13609 269 ELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVIR-------DDEEVFAKTEALLQ- 337 (380)
T ss_pred HHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEEC-------CHHHHHHHHHHHHC-
Confidence 79999998 99999988899999999999985 666778899999997 89987542 57899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 431 GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 431 ~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
|++.+++. ++..++. ....+.+..++.+++.
T Consensus 338 ~~~~~~~m---~~~~~~~-~~~~s~~~i~~~i~~~ 368 (380)
T PRK13609 338 DDMKLLQM---KEAMKSL-YLPEPADHIVDDILAE 368 (380)
T ss_pred CHHHHHHH---HHHHHHh-CCCchHHHHHHHHHHh
Confidence 87655443 3333332 1234444445555444
No 38
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.68 E-value=2.6e-15 Score=143.30 Aligned_cols=104 Identities=16% Similarity=0.152 Sum_probs=77.6
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEEecCCCCCCCCCchhhhHHHHHH--hCCCeEEeeccCh-hhh
Q 041902 279 SSVIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWVIREHENKDKDKGEDDVVMKYKEE--LNEKGMIVPWCSQ-VEV 353 (470)
Q Consensus 279 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~v~~~vp~-~~v 353 (470)
.+.|+|++|..... .....+++++... +.++.++++.+ . ...+.+++. ..+|+.+..++++ ..+
T Consensus 170 ~~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~-~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~l 238 (279)
T TIGR03590 170 LRRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSS-N--------PNLDELKKFAKEYPNIILFIDVENMAEL 238 (279)
T ss_pred cCeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCC-C--------cCHHHHHHHHHhCCCEEEEeCHHHHHHH
Confidence 35789999965532 2445666777664 35677777655 2 222233322 2468888899987 489
Q ss_pred ccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHH
Q 041902 354 LSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKI 396 (470)
Q Consensus 354 l~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~r 396 (470)
|+.+|+ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 239 m~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 239 MNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999999 999999 9999999999999999999999999975
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.61 E-value=3.3e-13 Score=135.32 Aligned_cols=352 Identities=11% Similarity=0.023 Sum_probs=178.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHH
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (470)
.|||+|+..++.||++|.+ ++++|+++++++.+++.... .+ +....+.++.+..++-. .. ...+..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~---------g~-~~~~~~ 66 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RM-QAAGCESLFDMEELAVM---------GL-VEVLPR 66 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HH-HhCCCccccCHHHhhhc---------cH-HHHHHH
Confidence 3799999999999999999 99999998888888764331 23 22000022222222210 00 111111
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCCccEEEeCCC-chhH--HHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 90 FKRRSSEALTEIITGSENQGAQPFTCLVYSLL-LPWT--AEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~-~~~~--~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
.. .....+..+.+.++. .+||+|++-.+ ..+. ...|...|||++.... +.
T Consensus 67 ~~-~~~~~~~~~~~~l~~---~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~-~~---------------------- 119 (380)
T PRK00025 67 LP-RLLKIRRRLKRRLLA---EPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVS-PS---------------------- 119 (380)
T ss_pred HH-HHHHHHHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeC-Cc----------------------
Confidence 11 112233333333443 67999987432 2233 3446778999886311 00
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccC
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVA 246 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 246 (470)
.|. +. .. ...+. .+.. +.+++.+....+. . ... +.++.++|....
T Consensus 120 ---------~~~------~~-----~~-------~~~~~---~~~~--d~i~~~~~~~~~~-~-~~~-g~~~~~~G~p~~ 164 (380)
T PRK00025 120 ---------VWA------WR-----QG-------RAFKI---AKAT--DHVLALFPFEAAF-Y-DKL-GVPVTFVGHPLA 164 (380)
T ss_pred ---------hhh------cC-----ch-------HHHHH---HHHH--hhheeCCccCHHH-H-Hhc-CCCeEEECcCHH
Confidence 000 00 00 00111 2223 4444443322221 1 111 345788885443
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh---C--CCCEEEEEecCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD---S--GHPFLWVIREHENK 321 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~ 321 (470)
..... .+ ......+.+.-.+++++|++..||-..........+++++.. . +.+++++.+.+
T Consensus 165 ~~~~~----------~~-~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~--- 230 (380)
T PRK00025 165 DAIPL----------LP-DRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP--- 230 (380)
T ss_pred Hhccc----------cc-ChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh---
Confidence 31100 00 112333333333355677777776543211223444444432 2 23455543322
Q ss_pred CCCCCchhhhHHHHHHh----CCCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccc------h--
Q 041902 322 DKDKGEDDVVMKYKEEL----NEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWT------D-- 389 (470)
Q Consensus 322 ~~~~~~~~~~~~~~~~~----~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~------D-- 389 (470)
...+.+.+.+ .-++.+.. -.-..+++.+|+ +|+.+|.+++ ||+++|+|+|++|-.. +
T Consensus 231 -------~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~ 299 (380)
T PRK00025 231 -------KRREQIEEALAEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKR 299 (380)
T ss_pred -------hhHHHHHHHHhhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHH
Confidence 1112232222 22333332 134678888998 9999998887 9999999999995332 1
Q ss_pred hhHH-----HHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 390 QGTN-----AKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 390 Q~~n-----A~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
|..| +..+++ .+++..+.. ...+++.|.+.+.++++ |++.+++..+-.+.+.+.. ..+...+.++.+.+
T Consensus 300 ~~~~~~~~l~~~~~~-~~~~~~~~~---~~~~~~~l~~~i~~ll~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~ 373 (380)
T PRK00025 300 LVKVPYVSLPNLLAG-RELVPELLQ---EEATPEKLARALLPLLA-DGARRQALLEGFTELHQQL-RCGADERAAQAVLE 373 (380)
T ss_pred HHcCCeeehHHHhcC-CCcchhhcC---CCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 2111 233333 333444432 56789999999999999 9876655444444344333 34555555555555
Q ss_pred Hhhc
Q 041902 465 DFGT 468 (470)
Q Consensus 465 ~l~~ 468 (470)
.+.+
T Consensus 374 ~~~~ 377 (380)
T PRK00025 374 LLKQ 377 (380)
T ss_pred Hhhh
Confidence 5443
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.52 E-value=8.9e-16 Score=135.39 Aligned_cols=139 Identities=18% Similarity=0.264 Sum_probs=98.7
Q ss_pred eEEEEecccccCCHH-HHHHHHHHHHhC--CCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccC-hhhhccc
Q 041902 281 VIYVAFGTICVLEKR-QVEEIARGLLDS--GHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCS-QVEVLSH 356 (470)
Q Consensus 281 vV~vs~GS~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp-~~~vl~~ 356 (470)
+|||+.||.....-. .+..+...+... ..++++.++.. ... .....+. ....|+.+.+|++ ...+++.
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~-~~~------~~~~~~~-~~~~~v~~~~~~~~m~~~m~~ 72 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN-NYE------ELKIKVE-NFNPNVKVFGFVDNMAELMAA 72 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC-ECH------HHCCCHC-CTTCCCEEECSSSSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC-cHH------HHHHHHh-ccCCcEEEEechhhHHHHHHH
Confidence 489999987743111 122233333322 46777877655 222 2211111 1226789999999 7899999
Q ss_pred cccccceeccCchhhhhhhhcCCcEeeccccc----hhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH
Q 041902 357 EAVGCFVTHCGWNSSLESLVCGVPVVAFPQWT----DQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD 432 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~----DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~ 432 (470)
+|+ +|||||.||++|++.+|+|+|++|... +|..||..+++ .|+|..+.. ...+.+.|.+.|.+++. ++
T Consensus 73 aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~---~~~~~~~L~~~i~~l~~-~~ 145 (167)
T PF04101_consen 73 ADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDE---SELNPEELAEAIEELLS-DP 145 (167)
T ss_dssp HSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSEC---CC-SCCCHHHHHHCHCC-CH
T ss_pred cCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCc---ccCCHHHHHHHHHHHHc-Cc
Confidence 999 999999999999999999999999988 99999999998 999999986 67789999999999999 77
Q ss_pred HH
Q 041902 433 EF 434 (470)
Q Consensus 433 ~~ 434 (470)
..
T Consensus 146 ~~ 147 (167)
T PF04101_consen 146 EK 147 (167)
T ss_dssp H-
T ss_pred HH
Confidence 54
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.50 E-value=8.1e-11 Score=118.28 Aligned_cols=164 Identities=14% Similarity=0.191 Sum_probs=110.8
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHh--CCCCEEEEEecCCCCCCCCCchhhhHHHHHH--hCCCeEEeeccCh-h
Q 041902 277 PKSSVIYVAFGTICVLEKRQVEEIARGLLD--SGHPFLWVIREHENKDKDKGEDDVVMKYKEE--LNEKGMIVPWCSQ-V 351 (470)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~v~~~vp~-~ 351 (470)
+++++|++..|+.... ..+..+++++.. .+.+++++.+.+ . .+-+.+.+. ..+++.+.+|+++ .
T Consensus 200 ~~~~~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~-~--------~l~~~l~~~~~~~~~v~~~G~~~~~~ 268 (391)
T PRK13608 200 PDKQTILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKS-K--------ELKRSLTAKFKSNENVLILGYTKHMN 268 (391)
T ss_pred CCCCEEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCC-H--------HHHHHHHHHhccCCCeEEEeccchHH
Confidence 4567888888987631 234444554333 234565555433 1 222233322 2357888899865 5
Q ss_pred hhccccccccceeccCchhhhhhhhcCCcEeec-cccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcC
Q 041902 352 EVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF-PQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGE 430 (470)
Q Consensus 352 ~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~-P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~ 430 (470)
.+++.+|+ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+.+ .|+|+... +.+++.++|.++++
T Consensus 269 ~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~~i~~ll~- 337 (391)
T PRK13608 269 EWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIKIVASLTN- 337 (391)
T ss_pred HHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHHHHHHHhc-
Confidence 68999999 99988888999999999999998 776778899999998 99998653 78899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 431 GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 431 ~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
|++.+ +++++.+++. ....+....++.+++.+
T Consensus 338 ~~~~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 338 GNEQL---TNMISTMEQD-KIKYATQTICRDLLDLI 369 (391)
T ss_pred CHHHH---HHHHHHHHHh-cCCCCHHHHHHHHHHHh
Confidence 87533 3444554443 22344455555555444
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.42 E-value=3.7e-10 Score=113.28 Aligned_cols=174 Identities=12% Similarity=0.097 Sum_probs=108.7
Q ss_pred HHHHhhccCCCCceEEEEecccccCCHHH-HHHHHHHHH-----hCCCCEEEEEecCCCCCCCCCchhhhHHHHHH-hCC
Q 041902 268 YYMEWLSSKPKSSVIYVAFGTICVLEKRQ-VEEIARGLL-----DSGHPFLWVIREHENKDKDKGEDDVVMKYKEE-LNE 340 (470)
Q Consensus 268 ~~~~~l~~~~~~~vV~vs~GS~~~~~~~~-~~~~~~al~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 340 (470)
.+.+-+.-.+++++|++..|+........ +..+...+. ..+..++++++.+ . .+-..+.+. ...
T Consensus 195 ~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~-~--------~~~~~L~~~~~~~ 265 (382)
T PLN02605 195 ELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRN-K--------KLQSKLESRDWKI 265 (382)
T ss_pred HHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCC-H--------HHHHHHHhhcccC
Confidence 33333333345678877766665322222 222222220 1234556666644 1 222233221 235
Q ss_pred CeEEeeccCh-hhhccccccccceeccCchhhhhhhhcCCcEeeccccchhh-HHHHHHHhhhcceeEeeecCCCCcCHH
Q 041902 341 KGMIVPWCSQ-VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQG-TNAKIIVDFCKTGVRVKANEEGILESD 418 (470)
Q Consensus 341 nv~v~~~vp~-~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~-~nA~rl~~~~GvG~~l~~~~~~~~~~~ 418 (470)
++.+.+|+++ ..++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|... -+++
T Consensus 266 ~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~-------~~~~ 335 (382)
T PLN02605 266 PVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS-------ESPK 335 (382)
T ss_pred CeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec-------CCHH
Confidence 6777899875 669999999 999999999999999999999998766675 68998997 8999754 3789
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 419 EIKRCLELVMGEG-DEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 419 ~l~~~i~~vl~~~-~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+|.+++.+++. + ++.++ ++++..++. ....+..+.++.+.+.
T Consensus 336 ~la~~i~~ll~-~~~~~~~---~m~~~~~~~-~~~~a~~~i~~~l~~~ 378 (382)
T PLN02605 336 EIARIVAEWFG-DKSDELE---AMSENALKL-ARPEAVFDIVHDLHEL 378 (382)
T ss_pred HHHHHHHHHHc-CCHHHHH---HHHHHHHHh-cCCchHHHHHHHHHHH
Confidence 99999999999 7 55433 344444432 1233334444444443
No 43
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.39 E-value=4.1e-14 Score=120.74 Aligned_cols=126 Identities=24% Similarity=0.230 Sum_probs=81.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCC--CCCCCCCCCCCchhhHHH-
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDG--YDDGFNSKQNDPRRYVSE- 89 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~--~~~~~~~~~~~~~~~~~~- 89 (470)
|+|++.|+.||++|+++||++|++|||+|++++++.+.+.+ ++ .|++|.+++.. +.......... ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~----~Gl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 74 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EA----AGLEFVPIPGDSRLPRSLEPLANL-RRLARLI 74 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HH----TT-EEEESSSCGGGGHHHHHHHHH-HCHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cc----cCceEEEecCCcCcCcccchhhhh-hhHHHHh
Confidence 78999999999999999999999999999999999999999 88 99999999866 11100000000 000010
Q ss_pred -HHHHhHHHHHHHHHhhh-h-cCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhh
Q 041902 90 -FKRRSSEALTEIITGSE-N-QGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPA 144 (470)
Q Consensus 90 -~~~~~~~~~~~~~~~l~-~-~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~ 144 (470)
........+.+...... . .+....|+++.+.....+..+|+++|||++.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 75 RGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 01111111111111110 0 0103578888888777899999999999999876554
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.37 E-value=2.8e-10 Score=114.02 Aligned_cols=336 Identities=13% Similarity=0.023 Sum_probs=178.9
Q ss_pred ccCHHHHHHHHHHHHh--CCCeEE---EEeCccc-hhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHh
Q 041902 21 QGHINPALQLARRLIR--IGTRVT---FATTIFA-YRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRS 94 (470)
Q Consensus 21 ~GH~~P~l~la~~L~~--~Gh~V~---~~~~~~~-~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
+|-=.=-++||++|++ .|++|. +++...- ....++. .| .+..+|.+--.. ... ...+.......
T Consensus 7 hged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~----~g-~~~~~~sgg~~~----~~~-~~~~~~~~~gl 76 (396)
T TIGR03492 7 HGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI----IG-PTKELPSGGFSY----QSL-RGLLRDLRAGL 76 (396)
T ss_pred chHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce----eC-CCCCCCCCCccC----CCH-HHHHHHHHhhH
Confidence 3433556789999998 699999 9987754 3333244 56 666666432211 111 23333333312
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCcccCCCC
Q 041902 95 SEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDLIELPGL 174 (470)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~ 174 (470)
...+.+....+++-. .+||+||+-.-+. ...+|..+|+|++.+.+.-.- +++.+....+.. +....+||.
T Consensus 77 ~~~~~~~~~~~~~~~-~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn------~~~~~~~~~~~~--~~~~~~~G~ 146 (396)
T TIGR03492 77 VGLTLGQWRALRKWA-KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSD------YYWESGPRRSPS--DEYHRLEGS 146 (396)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccc------eeecCCCCCccc--hhhhccCCC
Confidence 222222223333311 3799999975544 888899999999997654220 000000000000 000111221
Q ss_pred CCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccCCCccCCcc
Q 041902 175 PPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVASALWDGKE 254 (470)
Q Consensus 175 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~ 254 (470)
.+..+ + +..-..+.+ +.+..++- ......... +.++.|+|-.+.+.-...
T Consensus 147 -------------------~~~p~-e---~n~l~~~~a--~~v~~~~~--~t~~~l~~~-g~k~~~vGnPv~d~l~~~-- 196 (396)
T TIGR03492 147 -------------------LYLPW-E---RWLMRSRRC--LAVFVRDR--LTARDLRRQ-GVRASYLGNPMMDGLEPP-- 196 (396)
T ss_pred -------------------ccCHH-H---HHHhhchhh--CEEeCCCH--HHHHHHHHC-CCeEEEeCcCHHhcCccc--
Confidence 11101 0 000011223 44544432 222111111 458999997776621100
Q ss_pred cCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhC----CCCEEEEEecCCCCCCCCCchhh
Q 041902 255 LYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDS----GHPFLWVIREHENKDKDKGEDDV 330 (470)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~~~ 330 (470)
. .. -+ .+++++|.+--||-...-.+.+..+++++... +..|++.+....... .+
T Consensus 197 ----------~-~~---~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~------~~ 254 (396)
T TIGR03492 197 ----------E-RK---PL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSLE------KL 254 (396)
T ss_pred ----------c-cc---cc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHH------HH
Confidence 0 10 01 23456888888997543333445555555553 345555553220111 21
Q ss_pred hHHHHH-HhC--------------CCeEEeecc-ChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHH
Q 041902 331 VMKYKE-ELN--------------EKGMIVPWC-SQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNA 394 (470)
Q Consensus 331 ~~~~~~-~~~--------------~nv~v~~~v-p~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA 394 (470)
...+.+ ... .++.+..+. ....+++.+++ +|+-+|..| .|++..|+|+|++|....|. ||
T Consensus 255 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na 330 (396)
T TIGR03492 255 QAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TY 330 (396)
T ss_pred HHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HH
Confidence 111111 111 124444444 44779999999 999999766 99999999999999766675 88
Q ss_pred HHHHhhh----cceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHH
Q 041902 395 KIIVDFC----KTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSL 439 (470)
Q Consensus 395 ~rl~~~~----GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~ 439 (470)
...++ . |.++.+. ..+.+.|.+++.+++. |++.+++..
T Consensus 331 ~~~~~-~~~l~g~~~~l~-----~~~~~~l~~~l~~ll~-d~~~~~~~~ 372 (396)
T TIGR03492 331 GFAEA-QSRLLGGSVFLA-----SKNPEQAAQVVRQLLA-DPELLERCR 372 (396)
T ss_pred HHHHh-hHhhcCCEEecC-----CCCHHHHHHHHHHHHc-CHHHHHHHH
Confidence 76665 4 7666664 3456999999999999 876554444
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.32 E-value=1.3e-08 Score=100.44 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=80.6
Q ss_pred HhCCCeEEeeccChhh---hccccccccceeccC----chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeee
Q 041902 337 ELNEKGMIVPWCSQVE---VLSHEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 337 ~~~~nv~v~~~vp~~~---vl~~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
....|+.+.+++++.+ ++..+++ +|+++. .++++||+++|+|+|+.+..+ +...+++ .+.|.....
T Consensus 244 ~~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~-~~~g~~~~~ 316 (364)
T cd03814 244 ARYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTD-GENGLLVEP 316 (364)
T ss_pred ccCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcC-CcceEEcCC
Confidence 3458899999998654 7989998 887654 368999999999999887553 5566676 688988864
Q ss_pred cCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 410 NEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 410 ~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.+.+++.+++.+++. +++.+++..+-+....+ ..+.+...+++++-
T Consensus 317 -----~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 317 -----GDAEAFAAALAALLA-DPELRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred -----CCHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 577889999999999 88665554444444322 24555555555543
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.31 E-value=1.4e-08 Score=104.54 Aligned_cols=134 Identities=18% Similarity=0.151 Sum_probs=84.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEecCCCCCCCCCchhhhHHHHHHhC-CCeEEeeccChh---hhcc
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSG-HPFLWVIREHENKDKDKGEDDVVMKYKEELN-EKGMIVPWCSQV---EVLS 355 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~v~~~vp~~---~vl~ 355 (470)
.+++..|+... ...+..+++++.... .++ ++++.+ ...+.+.+... .++.+.+++++. .+++
T Consensus 264 ~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l-~ivG~G----------~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 264 PLIVYVGRLGA--EKNLDFLKRVMERLPGARL-AFVGDG----------PYREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred eEEEEeCCCch--hhhHHHHHHHHHhCCCcEE-EEEeCC----------hHHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 34556688763 234666777776653 443 445544 22233433322 577778999754 4888
Q ss_pred ccccccceeccC----chhhhhhhhcCCcEeeccccchhhHHHHHHHh--hhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 356 HEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVD--FCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 356 ~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~--~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
.+|+ +|.-.. ..++.||+++|+|+|+....+ ....+.+ .-+.|..++. -+.+++.+++.++++
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~-----~d~~~la~~i~~ll~ 399 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTP-----GDVDDCVEKLETLLA 399 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCC-----CCHHHHHHHHHHHHh
Confidence 8888 875433 346889999999999876432 2222221 0367887764 478999999999999
Q ss_pred CCHHHHHHHH
Q 041902 430 EGDEFRGNSL 439 (470)
Q Consensus 430 ~~~~~r~~a~ 439 (470)
|++.+++..
T Consensus 400 -~~~~~~~~~ 408 (465)
T PLN02871 400 -DPELRERMG 408 (465)
T ss_pred -CHHHHHHHH
Confidence 886544433
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.21 E-value=3.8e-08 Score=97.66 Aligned_cols=347 Identities=14% Similarity=0.048 Sum_probs=171.2
Q ss_pred EEEEEcCCC----ccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCC-----CCCCCceEEEcCCCCCCCCCCCCCC
Q 041902 12 HFLLVTFPA----QGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSP-----TPEDGLSFASFSDGYDDGFNSKQND 82 (470)
Q Consensus 12 ~il~~~~~~----~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~-----~~~~g~~~~~i~~~~~~~~~~~~~~ 82 (470)
||++++... .|+-.....+++.|+++||+|++++........ ... ....++.+..++...... ...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 75 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSG-KIYKGYKREEVDGVRVHRVPLPPYKK----NGL 75 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccc-cccccceEEecCCeEEEEEecCCCCc----cch
Confidence 466766633 489999999999999999999999876443332 110 000466666665322111 011
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc----hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccC
Q 041902 83 PRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL----PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYG 158 (470)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~----~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~ 158 (470)
...+.............+.. .. .+||+|++.... ..+..++...++|++........ ..
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~--~~---~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~------~~----- 138 (394)
T cd03794 76 -LKRLLNYLSFALSALLALLK--RR---RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWP------ES----- 138 (394)
T ss_pred -HHHHHhhhHHHHHHHHHHHh--cc---cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcc------hh-----
Confidence 01111111111111111111 12 679999998512 12345566679998875331100 00
Q ss_pred CccccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHH-HHHHhccCCeEEEcchHhhhHHHHHHhcCCC
Q 041902 159 DLIEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQM-EAIVEETDPKILVNTFDALEAETLRAIDKFN 237 (470)
Q Consensus 159 ~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 237 (470)
.... ..... .... ........ ..+..+ +.++..+....+.-........+
T Consensus 139 ------------~~~~----------~~~~~--~~~~---~~~~~~~~~~~~~~~--d~vi~~s~~~~~~~~~~~~~~~~ 189 (394)
T cd03794 139 ------------AVAL----------GLLKN--GSLL---YRLLRKLERLIYRRA--DAIVVISPGMREYLVRRGVPPEK 189 (394)
T ss_pred ------------HHHc----------cCccc--cchH---HHHHHHHHHHHHhcC--CEEEEECHHHHHHHHhcCCCcCc
Confidence 0000 00000 0000 01111111 123445 77777766555532101111234
Q ss_pred eeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccC-CHHHHHHHHHHHHhC-CCCEEEEE
Q 041902 238 MIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVL-EKRQVEEIARGLLDS-GHPFLWVI 315 (470)
Q Consensus 238 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~-~~~~i~~~ 315 (470)
+..+............. ........ ....++.+++..|+.... ..+.+..++..+... +.+++ ++
T Consensus 190 ~~~i~~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~ 256 (394)
T cd03794 190 ISVIPNGVDLELFKPPP----------ADESLRKE--LGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IV 256 (394)
T ss_pred eEEcCCCCCHHHcCCcc----------chhhhhhc--cCCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-Ee
Confidence 55555444331110000 00001111 122344677778886632 223333333333333 33433 34
Q ss_pred ecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChh---hhccccccccceeccCc---------hhhhhhhhcCCcEee
Q 041902 316 REHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQV---EVLSHEAVGCFVTHCGW---------NSSLESLVCGVPVVA 383 (470)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~---~vl~~~~v~~~ItHGG~---------gt~~eal~~GvP~v~ 383 (470)
+.+ ... ..+.........+|+.+.+++++. .++..+++ +|..... +++.||+++|+|+|+
T Consensus 257 G~~-~~~-----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~ 328 (394)
T cd03794 257 GDG-PEK-----EELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLA 328 (394)
T ss_pred CCc-ccH-----HHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEE
Confidence 433 111 011111111234788888999764 47888888 6654332 236999999999999
Q ss_pred ccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041902 384 FPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKW 441 (470)
Q Consensus 384 ~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~ 441 (470)
.+..+.+. .+.+ .+.|..+.. -+.+++.+++.+++. |++.+++..+-
T Consensus 329 ~~~~~~~~----~~~~-~~~g~~~~~-----~~~~~l~~~i~~~~~-~~~~~~~~~~~ 375 (394)
T cd03794 329 SVDGESAE----LVEE-AGAGLVVPP-----GDPEALAAAILELLD-DPEERAEMGEN 375 (394)
T ss_pred ecCCCchh----hhcc-CCcceEeCC-----CCHHHHHHHHHHHHh-ChHHHHHHHHH
Confidence 88765443 3333 467777764 488999999999998 77655444333
No 48
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.18 E-value=1e-07 Score=95.76 Aligned_cols=340 Identities=16% Similarity=0.139 Sum_probs=170.8
Q ss_pred CEEEEEcCCC----ccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhc-CCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 11 PHFLLVTFPA----QGHINPALQLARRLIRIGTRVTFATTIFAYRRMA-NSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 11 ~~il~~~~~~----~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
+|+.+.+..+ .|.-..+..|++.|+++||+|++++......... .... .++.+..++....... .. ..
T Consensus 7 ~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~----~~ 79 (398)
T cd03800 7 LHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELA--PGVRVVRVPAGPAEYL-PK----EE 79 (398)
T ss_pred ccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccc--cceEEEecccccccCC-Ch----hh
Confidence 3444544333 4677889999999999999999998654322210 1101 5777776653211100 00 11
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc--hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCcccc
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL--PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEE 163 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (470)
.+... ......+...+.... .+||+|++.... ..+..+++.+|+|++.......
T Consensus 80 ~~~~~----~~~~~~~~~~~~~~~-~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~------------------- 135 (398)
T cd03800 80 LWPYL----DEFADDLLRFLRREG-GRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLG------------------- 135 (398)
T ss_pred cchhH----HHHHHHHHHHHHhcC-CCccEEEEecCccchHHHHHHhhcCCceEEEeeccc-------------------
Confidence 11111 111222333333321 279999997533 3467778889999886422100
Q ss_pred ccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc-CCCeeEec
Q 041902 164 KVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID-KFNMIAIG 242 (470)
Q Consensus 164 ~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~~~~vG 242 (470)
....... ... .. .... .........+..+ +.++..+....+.-...... ..++..+.
T Consensus 136 ------------~~~~~~~---~~~---~~-~~~~-~~~~~~~~~~~~a--d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ 193 (398)
T cd03800 136 ------------AVKRRHL---GAA---DT-YEPA-RRIEAEERLLRAA--DRVIASTPQEAEELYSLYGAYPRRIRVVP 193 (398)
T ss_pred ------------ccCCccc---ccc---cc-cchh-hhhhHHHHHHhhC--CEEEEcCHHHHHHHHHHccccccccEEEC
Confidence 0000000 000 00 0000 0001111223455 88888776654432211111 12255555
Q ss_pred cccCCCccCCcccCCCCCCCCCChhH-HHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEe
Q 041902 243 PLVASALWDGKELYGGDLCKNSSKEY-YMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDS-----GHPFLWVIR 316 (470)
Q Consensus 243 pl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~ 316 (470)
+-.......... .... ...+. ..++ ..+++..|+.... ..+..+++++... +..+++ ++
T Consensus 194 ng~~~~~~~~~~----------~~~~~~~~~~-~~~~-~~~i~~~gr~~~~--k~~~~ll~a~~~l~~~~~~~~l~i-~G 258 (398)
T cd03800 194 PGVDLERFTPYG----------RAEARRARLL-RDPD-KPRILAVGRLDPR--KGIDTLIRAYAELPELRERANLVI-VG 258 (398)
T ss_pred CCCCccceeccc----------chhhHHHhhc-cCCC-CcEEEEEcccccc--cCHHHHHHHHHHHHHhCCCeEEEE-EE
Confidence 444331110000 0011 12222 2223 3566677886632 2233444444432 234444 33
Q ss_pred cCCCCCCCCCchhhh---HHHHHH--hCCCeEEeeccChhh---hccccccccceec----cCchhhhhhhhcCCcEeec
Q 041902 317 EHENKDKDKGEDDVV---MKYKEE--LNEKGMIVPWCSQVE---VLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAF 384 (470)
Q Consensus 317 ~~~~~~~~~~~~~~~---~~~~~~--~~~nv~v~~~vp~~~---vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~ 384 (470)
.+ ..... .... ..+.+. +..|+.+.+++|+.+ ++..+++ +++. |-..++.||+++|+|+|+.
T Consensus 259 ~~-~~~~~---~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s 332 (398)
T cd03800 259 GP-RDDIL---AMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVAT 332 (398)
T ss_pred CC-CCcch---hhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEEC
Confidence 33 11100 0000 111122 347788889999765 5888888 7754 2235899999999999987
Q ss_pred cccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHH
Q 041902 385 PQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFR 435 (470)
Q Consensus 385 P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r 435 (470)
... .....+++ .+.|..++. .+.+++.++|.++++ +++.+
T Consensus 333 ~~~----~~~e~i~~-~~~g~~~~~-----~~~~~l~~~i~~l~~-~~~~~ 372 (398)
T cd03800 333 AVG----GPRDIVVD-GVTGLLVDP-----RDPEALAAALRRLLT-DPALR 372 (398)
T ss_pred CCC----CHHHHccC-CCCeEEeCC-----CCHHHHHHHHHHHHh-CHHHH
Confidence 644 35556776 678888864 479999999999999 77543
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.14 E-value=4.7e-07 Score=91.34 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCeEEeeccChhh---hcccccccccee---ccCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecC
Q 041902 339 NEKGMIVPWCSQVE---VLSHEAVGCFVT---HCGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 411 (470)
Q Consensus 339 ~~nv~v~~~vp~~~---vl~~~~v~~~It---HGG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~ 411 (470)
.+++.+.+++|+.+ ++..+++ +|. +.|. .++.||+++|+|+|+.. .......+.+ -..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~-~~~G~lv~~-- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITD-GENGLLVDF-- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhccc-CCceEEcCC--
Confidence 36788889998755 6778888 553 2233 37899999999999864 3455566665 456777754
Q ss_pred CCCcCHHHHHHHHHHHhcCCHHHHHH
Q 041902 412 EGILESDEIKRCLELVMGEGDEFRGN 437 (470)
Q Consensus 412 ~~~~~~~~l~~~i~~vl~~~~~~r~~ 437 (470)
.+.+++.++|.++++ +++.+++
T Consensus 351 ---~d~~~la~~i~~ll~-~~~~~~~ 372 (396)
T cd03818 351 ---FDPDALAAAVIELLD-DPARRAR 372 (396)
T ss_pred ---CCHHHHHHHHHHHHh-CHHHHHH
Confidence 579999999999999 8754443
No 50
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=1e-08 Score=93.47 Aligned_cols=295 Identities=15% Similarity=0.072 Sum_probs=181.9
Q ss_pred CEEEEEcCC----CccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhh
Q 041902 11 PHFLLVTFP----AQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRY 86 (470)
Q Consensus 11 ~~il~~~~~----~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 86 (470)
|||+|.+-+ +.||+.+++.||++|.++|..++|.+.+...+.+ ...- .++.+.... .. .
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~-~~~~--~~f~~~~~~----~~--------n-- 63 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAII-HKVY--EGFKVLEGR----GN--------N-- 63 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhh-hhhh--hhccceeee----cc--------c--
Confidence 789998875 4599999999999999999999999988766544 1100 112111110 00 0
Q ss_pred HHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchh---HHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCcccc
Q 041902 87 VSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPW---TAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEE 163 (470)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~---~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~ 163 (470)
.+++ .++|++|+|.+... ...+..+.+.+.+.+-.-..
T Consensus 64 -----------------~ik~---~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~------------------- 104 (318)
T COG3980 64 -----------------LIKE---EKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENA------------------- 104 (318)
T ss_pred -----------------cccc---ccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCc-------------------
Confidence 2333 57999999987753 35667789999988622110
Q ss_pred ccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEecc
Q 041902 164 KVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGP 243 (470)
Q Consensus 164 ~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGp 243 (470)
+++ . + ..-..+....+ +.... ..++..-++.||
T Consensus 105 --------~~~-----------------~--d------~d~ivN~~~~a-------~~~y~-------~v~~k~~~~lGp 137 (318)
T COG3980 105 --------KSF-----------------K--D------NDLIVNAILNA-------NDYYG-------LVPNKTRYYLGP 137 (318)
T ss_pred --------cch-----------------h--h------hHhhhhhhhcc-------hhhcc-------ccCcceEEEecC
Confidence 000 0 0 00000000000 00000 000222467776
Q ss_pred ccCCCccCCcccCCCCCCCCCChhHHH-HhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCC
Q 041902 244 LVASALWDGKELYGGDLCKNSSKEYYM-EWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKD 322 (470)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 322 (470)
-...=+. + + -.+. +.+.+ +..-|+|++|-.- .....-.++..+...+..+-++++.. .
T Consensus 138 ~y~~lr~---e------F-----~~~r~~~~~r--~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~-~-- 196 (318)
T COG3980 138 GYAPLRP---E------F-----YALREENTER--PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS-N-- 196 (318)
T ss_pred CceeccH---H------H-----HHhHHHHhhc--chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC-C--
Confidence 6554100 0 0 0111 11222 2335999998533 22355667777877776665666533 1
Q ss_pred CCCCchhhhHHHHHHh--CCCeEEeeccC-hhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHh
Q 041902 323 KDKGEDDVVMKYKEEL--NEKGMIVPWCS-QVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVD 399 (470)
Q Consensus 323 ~~~~~~~~~~~~~~~~--~~nv~v~~~vp-~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~ 399 (470)
....++..+. -+|+.+..... ...+++.|++ .|+-|| .|+.|++.-|+|.+++|...-|---|...+.
T Consensus 197 ------p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~ 267 (318)
T COG3980 197 ------PTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA 267 (318)
T ss_pred ------cchhHHHHHHhhCCCeeeEecchhHHHHHHhcch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh
Confidence 2223333222 26666654443 5679999999 999888 7999999999999999999999999999997
Q ss_pred hhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041902 400 FCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDL 444 (470)
Q Consensus 400 ~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~ 444 (470)
+|+-..+.. .+++......+.++.+ |+..|++...-.+.
T Consensus 268 -lg~~~~l~~----~l~~~~~~~~~~~i~~-d~~~rk~l~~~~~~ 306 (318)
T COG3980 268 -LGIIKQLGY----HLKDLAKDYEILQIQK-DYARRKNLSFGSKL 306 (318)
T ss_pred -cCchhhccC----CCchHHHHHHHHHhhh-CHHHhhhhhhccce
Confidence 999888875 4888888888999999 88877776655443
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.12 E-value=8.9e-08 Score=94.17 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=66.6
Q ss_pred hCCCeEEeeccChhh---hcccccccccee----ccCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeee
Q 041902 338 LNEKGMIVPWCSQVE---VLSHEAVGCFVT----HCGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~---vl~~~~v~~~It----HGG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
...++.+.+++++.+ ++..+++ +|+ ..|.+ ++.||+++|+|+|+.+. ..+...+.+ -+.|..+..
T Consensus 241 ~~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~ 313 (359)
T cd03823 241 GDPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFPP 313 (359)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEECC
Confidence 347888889997644 6888888 663 23444 78999999999998654 345666775 567888864
Q ss_pred cCCCCcCHHHHHHHHHHHhcCCHHHHHHHHH
Q 041902 410 NEEGILESDEIKRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 410 ~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~ 440 (470)
-+.+++.+++.++++ ++..+++..+
T Consensus 314 -----~d~~~l~~~i~~l~~-~~~~~~~~~~ 338 (359)
T cd03823 314 -----GDAEDLAAALERLID-DPDLLERLRA 338 (359)
T ss_pred -----CCHHHHHHHHHHHHh-ChHHHHHHHH
Confidence 468999999999999 8765444433
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.12 E-value=2.5e-07 Score=92.12 Aligned_cols=112 Identities=19% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCCeEEeeccCh-hhhccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCC
Q 041902 339 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEG 413 (470)
Q Consensus 339 ~~nv~v~~~vp~-~~vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~ 413 (470)
.+++.+.++.++ ..++..+++ +|.- |...++.||+++|+|+|+... ...+..+.+ -..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~-~~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKH-GETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcC-CCceEEcCC----
Confidence 467887787765 568888888 6632 334599999999999998643 445666665 567877653
Q ss_pred CcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 414 ILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 414 ~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
-+.+++.+++.++++ ++..+++..+-+... +...-+.+....++.+-+
T Consensus 321 -~~~~~l~~~i~~l~~-~~~~~~~~~~~~~~~---~~~~fs~~~~~~~~~~~y 368 (371)
T cd04962 321 -GDVEAMAEYALSLLE-DDELWQEFSRAARNR---AAERFDSERIVPQYEALY 368 (371)
T ss_pred -CCHHHHHHHHHHHHh-CHHHHHHHHHHHHHH---HHHhCCHHHHHHHHHHHH
Confidence 478999999999999 875444333322222 122355555555555443
No 53
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.12 E-value=5.3e-07 Score=88.24 Aligned_cols=321 Identities=14% Similarity=0.116 Sum_probs=168.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchh-hhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYR-RMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEF 90 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~-~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (470)
||++++....|+......+++.|.+.||+|++++...... .. .. .|+++..++..... ... ...+..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~-----~~~-~~~~~~- 68 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEEL-EA----LGVKVIPIPLDRRG-----INP-FKDLKA- 68 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccc-cc----CCceEEeccccccc-----cCh-HhHHHH-
Confidence 5788888888888999999999999999999998776554 23 44 67888877633210 011 111111
Q ss_pred HHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch--hHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCc
Q 041902 91 KRRSSEALTEIITGSENQGAQPFTCLVYSLLLP--WTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDL 168 (470)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~--~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 168 (470)
+..+.+.++. .+||+|++..... .+..+++..+.|.+........
T Consensus 69 -------~~~~~~~~~~---~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------- 115 (359)
T cd03808 69 -------LLRLYRLLRK---ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLG----------------------- 115 (359)
T ss_pred -------HHHHHHHHHh---cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcc-----------------------
Confidence 1123333333 4699999875433 3445555466665554321100
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcC-CC-eeEeccccC
Q 041902 169 IELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDK-FN-MIAIGPLVA 246 (470)
Q Consensus 169 ~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~-~~~vGpl~~ 246 (470)
. .. .. ............+ ...... +.++..+....+.-....... .. +...+....
T Consensus 116 -----~-----~~----~~----~~~~~~~~~~~~~--~~~~~~--d~ii~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (359)
T cd03808 116 -----F-----VF----TS----GGLKRRLYLLLER--LALRFT--DKVIFQNEDDRDLALKLGIIKKKKTVLIPGSGVD 173 (359)
T ss_pred -----h-----hh----cc----chhHHHHHHHHHH--HHHhhc--cEEEEcCHHHHHHHHHhcCCCcCceEEecCCCCC
Confidence 0 00 00 0000001111111 112344 677777655554321111100 12 232222222
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhcc-CCCCceEEEEecccccC-CHHHHHHHHHHHHhCCCCE-EEEEecCCCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSS-KPKSSVIYVAFGTICVL-EKRQVEEIARGLLDSGHPF-LWVIREHENKDK 323 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~ 323 (470)
.... .+ ... ..+++.+++..|+.... ..+.+-.++..+...+.++ +++++.+ ....
T Consensus 174 ~~~~-----------~~---------~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~-~~~~ 232 (359)
T cd03808 174 LDRF-----------SP---------SPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDG-DEEN 232 (359)
T ss_pred hhhc-----------Cc---------cccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCC-Ccch
Confidence 1100 00 000 12344677788887632 2233333344443323333 2333333 2110
Q ss_pred CCCchhhhHH-HHH-HhCCCeEEeeccC-hhhhccccccccceeccC----chhhhhhhhcCCcEeeccccchhhHHHHH
Q 041902 324 DKGEDDVVMK-YKE-ELNEKGMIVPWCS-QVEVLSHEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTDQGTNAKI 396 (470)
Q Consensus 324 ~~~~~~~~~~-~~~-~~~~nv~v~~~vp-~~~vl~~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~DQ~~nA~r 396 (470)
..... ..+ ....++...++.. ...++..+++ +|.... .+++.||+++|+|+|+.+.. .+...
T Consensus 233 -----~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~ 301 (359)
T cd03808 233 -----PAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREA 301 (359)
T ss_pred -----hhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhh
Confidence 11110 111 1236777777653 4668888988 775443 56899999999999986544 34556
Q ss_pred HHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHH
Q 041902 397 IVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNS 438 (470)
Q Consensus 397 l~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a 438 (470)
+.+ .+.|..++. -+.+++.+++.+++. +++.+++.
T Consensus 302 i~~-~~~g~~~~~-----~~~~~~~~~i~~l~~-~~~~~~~~ 336 (359)
T cd03808 302 VID-GVNGFLVPP-----GDAEALADAIERLIE-DPELRARM 336 (359)
T ss_pred hhc-CcceEEECC-----CCHHHHHHHHHHHHh-CHHHHHHH
Confidence 665 577887763 478999999999999 87554443
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.11 E-value=6.6e-07 Score=90.78 Aligned_cols=118 Identities=5% Similarity=-0.096 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch---hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY---RRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~---~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
++.|+++++....|+-..+..+|+.|+++||+|++++..... +.. .. .|+.++.++..- .. .... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~-~~----~~v~~~~~~~~~-~~---~~~~-~~ 71 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEIL-SN----PNITIHPLPPPP-QR---LNKL-PF 71 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHh-cC----CCEEEEECCCCc-cc---cccc-hH
Confidence 456899999988899999999999999999999999865432 213 34 788888885421 00 1111 12
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc----h-hHHHHHHHcCCCeEEE
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL----P-WTAEVARAYHLPSALL 139 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~----~-~~~~~A~~~giP~i~~ 139 (470)
.+..+... ...+..++..+... .+||+|++.... . .+..++...++|+|..
T Consensus 72 ~~~~~~~~-~~~~~~~~~~l~~~--~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~ 127 (415)
T cd03816 72 LLFAPLKV-LWQFFSLLWLLYKL--RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIID 127 (415)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhc--CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEE
Confidence 22221111 11122222222111 469999985322 1 2444566789998874
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.09 E-value=6.6e-07 Score=90.73 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=91.0
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhCC--CCE-EEEEecCCCCCCCCCchhhhHHHHH---Hh-CCCeEEeeccChh-
Q 041902 280 SVIYVAFGTICVLEKRQVEEIARGLLDSG--HPF-LWVIREHENKDKDKGEDDVVMKYKE---EL-NEKGMIVPWCSQV- 351 (470)
Q Consensus 280 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~--~~~-i~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~nv~v~~~vp~~- 351 (470)
+.+++..|+... ...+..+++++.... .++ +++++.+ ...+.+++ .. -+|+.+.+++|+.
T Consensus 229 ~~~i~~~G~l~~--~kg~~~li~a~~~l~~~~~~~l~ivG~g----------~~~~~l~~~~~~~~l~~v~f~G~~~~~~ 296 (412)
T PRK10307 229 KKIVLYSGNIGE--KQGLELVIDAARRLRDRPDLIFVICGQG----------GGKARLEKMAQCRGLPNVHFLPLQPYDR 296 (412)
T ss_pred CEEEEEcCcccc--ccCHHHHHHHHHHhccCCCeEEEEECCC----------hhHHHHHHHHHHcCCCceEEeCCCCHHH
Confidence 355666788763 233555556555431 123 2344444 22222221 11 2578888999875
Q ss_pred --hhccccccccceeccCc------hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHH
Q 041902 352 --EVLSHEAVGCFVTHCGW------NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRC 423 (470)
Q Consensus 352 --~vl~~~~v~~~ItHGG~------gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~ 423 (470)
.+++.+|+.++.+..+. +.+.|++++|+|+|+....+.. ... +.+ +.|..++. -+.++|.++
T Consensus 297 ~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~-~i~--~~G~~~~~-----~d~~~la~~ 366 (412)
T PRK10307 297 LPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQ-LVE--GIGVCVEP-----ESVEALVAA 366 (412)
T ss_pred HHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHH-HHh--CCcEEeCC-----CCHHHHHHH
Confidence 46888888444444332 2367999999999998654311 111 222 56777764 578999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 424 LELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 424 i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
|.++++ |+..+++ +++..++.....-+....+.++++.+.
T Consensus 367 i~~l~~-~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~~~ 406 (412)
T PRK10307 367 IAALAR-QALLRPK---LGTVAREYAERTLDKENVLRQFIADIR 406 (412)
T ss_pred HHHHHh-CHHHHHH---HHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 999998 7744333 222222222233455555555555443
No 56
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.09 E-value=3.2e-07 Score=93.42 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=71.5
Q ss_pred hhhccccccccceec-----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHH
Q 041902 351 VEVLSHEAVGCFVTH-----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLE 425 (470)
Q Consensus 351 ~~vl~~~~v~~~ItH-----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~ 425 (470)
..+++.+|+ ++.. ||..++.||+++|+|+|+.|...++......+.+ .|.++... +.++|.+++.
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~~-------d~~~La~~l~ 383 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQVE-------DAEDLAKAVT 383 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEEC-------CHHHHHHHHH
Confidence 557788887 4432 3444699999999999999998888888888876 67666532 6899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHhhcCC
Q 041902 426 LVMGEGDEFRGNSLKWKDLAREAAKQ-GGSSYKNLKAFVDDFGTSK 470 (470)
Q Consensus 426 ~vl~~~~~~r~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~ 470 (470)
++++ |++.+++..+-+.. .+.. .+...+.++.+.+.|.++|
T Consensus 384 ~ll~-~~~~~~~m~~~a~~---~~~~~~~~~~~~~~~l~~~l~~~~ 425 (425)
T PRK05749 384 YLLT-DPDARQAYGEAGVA---FLKQNQGALQRTLQLLEPYLPPLK 425 (425)
T ss_pred HHhc-CHHHHHHHHHHHHH---HHHhCccHHHHHHHHHHHhcccCC
Confidence 9999 88655443333322 2222 3444455555555555554
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.09 E-value=3.2e-07 Score=90.53 Aligned_cols=83 Identities=19% Similarity=0.311 Sum_probs=62.6
Q ss_pred hCCCeEEeeccChhh---hccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCSQVE---VLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~---vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
..+++.+.+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+... ...+..+.+ .+.|..++.
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~-~~~g~~~~~- 328 (374)
T cd03817 257 LADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVAD-GENGFLFPP- 328 (374)
T ss_pred CCCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheec-CceeEEeCC-
Confidence 357888889998754 6888888 6643 334689999999999998653 445666676 678888874
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEF 434 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~ 434 (470)
. +. ++.+++.++++ +++.
T Consensus 329 --~--~~-~~~~~i~~l~~-~~~~ 346 (374)
T cd03817 329 --G--DE-ALAEALLRLLQ-DPEL 346 (374)
T ss_pred --C--CH-HHHHHHHHHHh-ChHH
Confidence 2 22 99999999999 7753
No 58
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.07 E-value=8.3e-07 Score=87.00 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=77.6
Q ss_pred hCCCeEEeeccCh---hhhcccccccccee----ccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCSQ---VEVLSHEAVGCFVT----HCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp~---~~vl~~~~v~~~It----HGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
.+.++.+.+++++ ..++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+ .+.|..+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCC-
Confidence 5588888899964 447888888 663 3556789999999999998765 456666775 678888764
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHHHHHhcCCCcHHHHHHHHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEFRGNSLKWKD-LAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.+.+++.+++.+++. +++.+++..+-+. .+.+ .-+.+....++++.
T Consensus 326 ----~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 372 (374)
T cd03801 326 ----GDPEALAEAILRLLD-DPELRRRLGEAARERVAE----RFSWDRVAARTEEV 372 (374)
T ss_pred ----CCHHHHHHHHHHHHc-ChHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHh
Confidence 468999999999999 8764443333322 3333 35555555555543
No 59
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.04 E-value=7e-09 Score=103.25 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=88.5
Q ss_pred CCceEEEEecccccC-CHHHHHHHHHHHHhCCC-CEEEEEecCCCCCCCCCchhhhHHHHHHh---CCCeEEeeccCh--
Q 041902 278 KSSVIYVAFGTICVL-EKRQVEEIARGLLDSGH-PFLWVIREHENKDKDKGEDDVVMKYKEEL---NEKGMIVPWCSQ-- 350 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~nv~v~~~vp~-- 350 (470)
+++.|++++|..... ....+..+++++..... +++++...+ +... ..+..... .. .+++.+.++.++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~-~~~~----~~l~~~~~-~~~~~~~~v~~~~~~~~~~ 270 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH-PRTR----PRIREAGL-EFLGHHPNVLLISPLGYLY 270 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC-CChH----HHHHHHHH-hhccCCCCEEEECCcCHHH
Confidence 455788888876533 24557777777776533 355555443 2210 02222111 22 367777765544
Q ss_pred -hhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 351 -VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 351 -~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..++..+++ +|+..| |.+.||++.|+|+|+++...+ +..+.+ .|++..+. -+.++|.+++.+++.
T Consensus 271 ~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~-~g~~~~~~------~~~~~i~~~i~~ll~ 336 (363)
T cd03786 271 FLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVE-SGTNVLVG------TDPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhh-eeeEEecC------CCHHHHHHHHHHHhc
Confidence 356777888 999999 788899999999999874322 334444 57665553 258999999999999
Q ss_pred CCHHHHHH
Q 041902 430 EGDEFRGN 437 (470)
Q Consensus 430 ~~~~~r~~ 437 (470)
++..+++
T Consensus 337 -~~~~~~~ 343 (363)
T cd03786 337 -DEFAYSL 343 (363)
T ss_pred -Cchhhhc
Confidence 7654433
No 60
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.01 E-value=2.1e-06 Score=93.58 Aligned_cols=406 Identities=14% Similarity=0.137 Sum_probs=205.4
Q ss_pred cccccCCCCEEEEEcCCCc---------------cCHHHHHHHHHHHHhCC--CeEEEEeCccchhhh-------cCCCC
Q 041902 3 QEQHRQHQPHFLLVTFPAQ---------------GHINPALQLARRLIRIG--TRVTFATTIFAYRRM-------ANSPT 58 (470)
Q Consensus 3 ~~~~~~~~~~il~~~~~~~---------------GH~~P~l~la~~L~~~G--h~V~~~~~~~~~~~v-------~~~~~ 58 (470)
..|++.++|.|++++..+. |+..-.+.||++|+++| |+|.++|-......+ .+-+.
T Consensus 162 ~~~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~ 241 (1050)
T TIGR02468 162 SDQQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLT 241 (1050)
T ss_pred hhhcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccc
Confidence 3477888999999876433 46667899999999998 899999864432111 01110
Q ss_pred C-----------C-CCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHH----Hhhhh-cCCCCccEEEeCCC
Q 041902 59 P-----------E-DGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEII----TGSEN-QGAQPFTCLVYSLL 121 (470)
Q Consensus 59 ~-----------~-~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~-~~~~~pDlvv~d~~ 121 (470)
+ . .|+..+.+|-+-...+.....+ ..++..|.+.+...+..+- +++.. .. ..||+|-+...
T Consensus 242 ~~~~~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L-~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~-~~pDvIHaHyw 319 (1050)
T TIGR02468 242 PRSSENDGDEMGESSGAYIIRIPFGPRDKYIPKEEL-WPYIPEFVDGALSHIVNMSKVLGEQIGSGHP-VWPYVIHGHYA 319 (1050)
T ss_pred ccccccccccccCCCCeEEEEeccCCCCCCcCHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhhccccC-CCCCEEEECcc
Confidence 0 0 5888888886643333333333 5666666666555544322 22211 11 35999999853
Q ss_pred c--hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCcccCCCCCCCCCCCCCCccCCCCCCCchhHHH
Q 041902 122 L--PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDLIELPGLPPLTGWDLPSFMDPRKSNDAYSFIL 199 (470)
Q Consensus 122 ~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~ 199 (470)
. ..+..+++.+|||+|....+.. ...... . .-.+. ..... +. ..+...
T Consensus 320 ~sG~aa~~L~~~lgVP~V~T~HSLg----r~K~~~-----l---------l~~g~--~~~~~----~~-----~~y~~~- 369 (1050)
T TIGR02468 320 DAGDSAALLSGALNVPMVLTGHSLG----RDKLEQ-----L---------LKQGR--MSKEE----IN-----STYKIM- 369 (1050)
T ss_pred hHHHHHHHHHHhhCCCEEEECccch----hhhhhh-----h---------ccccc--ccccc----cc-----cccchH-
Confidence 3 2578888999999887543211 000000 0 00000 00000 00 001100
Q ss_pred HHHHHHHHHHHhccCCeEEEcchHhhhHHHHHH--hc---------------------CCCeeEeccccCCCcc-CCccc
Q 041902 200 TCFKEQMEAIVEETDPKILVNTFDALEAETLRA--ID---------------------KFNMIAIGPLVASALW-DGKEL 255 (470)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~--~~---------------------~~~~~~vGpl~~~~~~-~~~~~ 255 (470)
....-....+..+ +.++..|..+-+..+..+ ++ ..++..|.|=+...+. |....
T Consensus 370 ~Ri~~Ee~~l~~A--d~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~ 447 (1050)
T TIGR02468 370 RRIEAEELSLDAS--EIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGD 447 (1050)
T ss_pred HHHHHHHHHHHhc--CEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCcc
Confidence 1111112234556 889988887776432221 00 0022222222221111 10000
Q ss_pred CCC-------CCCCC--CChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCC-----CCEEEEEecCCCC
Q 041902 256 YGG-------DLCKN--SSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSG-----HPFLWVIREHENK 321 (470)
Q Consensus 256 ~~~-------~~~~~--~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~ 321 (470)
... ....+ .....+..|+.. +++++| +..|..... ..+..+++|+.... .++.++++.+ +.
T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~l~r~~~~-pdkpvI-L~VGRL~p~--KGi~~LIeAf~~L~~l~~~~nL~LIiG~g-dd 522 (1050)
T TIGR02468 448 MDGETEGNEEHPAKPDPPIWSEIMRFFTN-PRKPMI-LALARPDPK--KNITTLVKAFGECRPLRELANLTLIMGNR-DD 522 (1050)
T ss_pred ccchhcccccccccccchhhHHHHhhccc-CCCcEE-EEEcCCccc--cCHHHHHHHHHHhHhhccCCCEEEEEecC-ch
Confidence 000 00000 011355566654 445444 455766532 23455666665431 2454555543 11
Q ss_pred CCCCCch----hhhHHH---HHH--hCCCeEEeeccChhh---hcccc----ccccceec---cCc-hhhhhhhhcCCcE
Q 041902 322 DKDKGED----DVVMKY---KEE--LNEKGMIVPWCSQVE---VLSHE----AVGCFVTH---CGW-NSSLESLVCGVPV 381 (470)
Q Consensus 322 ~~~~~~~----~~~~~~---~~~--~~~nv~v~~~vp~~~---vl~~~----~v~~~ItH---GG~-gt~~eal~~GvP~ 381 (470)
. + ... ..-..+ .++ +.++|.+.+++++.+ ++..+ ++ ||.- =|+ .++.||+++|+|+
T Consensus 523 ~-d-~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPV 598 (1050)
T TIGR02468 523 I-D-EMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPM 598 (1050)
T ss_pred h-h-hhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCE
Confidence 0 0 000 000111 112 347777778887754 45544 35 7764 344 4889999999999
Q ss_pred eeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 041902 382 VAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKA 461 (470)
Q Consensus 382 v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~ 461 (470)
|+....+ ....+.. -.-|+.+++ -+.+.|.++|.++++ |+..+++..+-+.+..+ .-+-...+..
T Consensus 599 VASdvGG----~~EII~~-g~nGlLVdP-----~D~eaLA~AL~~LL~-Dpelr~~m~~~gr~~v~----~FSWe~ia~~ 663 (1050)
T TIGR02468 599 VATKNGG----PVDIHRV-LDNGLLVDP-----HDQQAIADALLKLVA-DKQLWAECRQNGLKNIH----LFSWPEHCKT 663 (1050)
T ss_pred EEeCCCC----cHHHhcc-CCcEEEECC-----CCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH----HCCHHHHHHH
Confidence 9986543 3334444 456887764 578999999999999 88655554443332221 2444455555
Q ss_pred HHHHh
Q 041902 462 FVDDF 466 (470)
Q Consensus 462 ~~~~l 466 (470)
+++.+
T Consensus 664 yl~~i 668 (1050)
T TIGR02468 664 YLSRI 668 (1050)
T ss_pred HHHHH
Confidence 55544
No 61
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.98 E-value=2.5e-07 Score=92.30 Aligned_cols=137 Identities=12% Similarity=0.150 Sum_probs=85.4
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHHhC-----CCCEEEEEecCCCCCCCCCchhhhHHHHHHh--CCCeEEeeccCh-
Q 041902 279 SSVIYVAFGTICVLEKRQVEEIARGLLDS-----GHPFLWVIREHENKDKDKGEDDVVMKYKEEL--NEKGMIVPWCSQ- 350 (470)
Q Consensus 279 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nv~v~~~vp~- 350 (470)
+++|+++.+-..... ..+..+++++... +.++++....+ . .....+.+.. .+++.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~---~------~~~~~~~~~~~~~~~v~~~~~~~~~ 266 (365)
T TIGR00236 197 KRYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLN---P------VVREPLHKHLGDSKRVHLIEPLEYL 266 (365)
T ss_pred CCEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCC---h------HHHHHHHHHhCCCCCEEEECCCChH
Confidence 356776654322111 3366666666553 34444443322 1 1212222222 367888766654
Q ss_pred --hhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHh
Q 041902 351 --VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 351 --~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl 428 (470)
..+++.+++ +|+-.|.. +.||+++|+|+|.++..++++. +.+ .|.+..+. .+.++|.+++.+++
T Consensus 267 ~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d~~~i~~ai~~ll 332 (365)
T TIGR00236 267 DFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TDKENITKAAKRLL 332 (365)
T ss_pred HHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CCHHHHHHHHHHHH
Confidence 457778888 99987744 7999999999999875555553 333 57776553 37899999999999
Q ss_pred cCCHHHHHHHHH
Q 041902 429 GEGDEFRGNSLK 440 (470)
Q Consensus 429 ~~~~~~r~~a~~ 440 (470)
. +++.+++..+
T Consensus 333 ~-~~~~~~~~~~ 343 (365)
T TIGR00236 333 T-DPDEYKKMSN 343 (365)
T ss_pred h-ChHHHHHhhh
Confidence 9 8876665543
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.98 E-value=1.5e-06 Score=84.63 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=66.2
Q ss_pred CCCeEEeecc-ChhhhccccccccceeccC----chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhc-ceeEeeecCC
Q 041902 339 NEKGMIVPWC-SQVEVLSHEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCK-TGVRVKANEE 412 (470)
Q Consensus 339 ~~nv~v~~~v-p~~~vl~~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~G-vG~~l~~~~~ 412 (470)
..++.+.++. ....++..+++ +|.... ..++.||+++|+|+|+.+....+. .+.+ -| .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~-~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIE-DGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhc-cCcceEEeCC---
Confidence 4567776764 34668888888 776542 468999999999999876544332 2333 45 7887763
Q ss_pred CCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGEGDEFRGNSLKWKDLA 445 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~ 445 (470)
.+.+++.+++.++++ |++.+++..+-+..+
T Consensus 304 --~~~~~~~~~i~~ll~-~~~~~~~~~~~~~~~ 333 (348)
T cd03820 304 --GDVEALAEALLRLME-DEELRKRMGANARES 333 (348)
T ss_pred --CCHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence 568999999999999 987666555544333
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.95 E-value=3e-06 Score=83.26 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=64.1
Q ss_pred hCCCeEEeeccChh---hhccccccccce----eccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFV----THCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~I----tHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
..+|+.+.+++++. .++..+++ +| +-|..+++.||+++|+|+|+.+.. .....+.+ .+.|..+.
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~-~~~g~~~~-- 327 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITD-GENGLLVP-- 327 (377)
T ss_pred CcceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcC-CcceeEEC--
Confidence 35788888999864 56888888 55 235567899999999999986543 34556676 66677776
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEF 434 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~ 434 (470)
.-+.+++.+++.+++. ++..
T Consensus 328 ---~~~~~~l~~~i~~~~~-~~~~ 347 (377)
T cd03798 328 ---PGDPEALAEAILRLLA-DPWL 347 (377)
T ss_pred ---CCCHHHHHHHHHHHhc-CcHH
Confidence 3689999999999999 7763
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.95 E-value=3.1e-06 Score=83.48 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=86.2
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEecCCCCCCCCCchhhhHHHHH-----HhCCCeEEeeccChh---
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSG-HPFLWVIREHENKDKDKGEDDVVMKYKE-----ELNEKGMIVPWCSQV--- 351 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~v~~~vp~~--- 351 (470)
.+++..|+... ......+++++.... ..+++ ++.+ .....+.+ ....|+.+.+++|+.
T Consensus 192 ~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i-~G~g----------~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 192 PFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVI-VGEG----------PLEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred cEEEEeccccc--ccCHHHHHHHHHhccCcEEEE-EeCC----------hhHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 45667787653 234666777777766 33333 3333 11122221 235789999999974
Q ss_pred hhcccccccccee---ccCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHH
Q 041902 352 EVLSHEAVGCFVT---HCGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELV 427 (470)
Q Consensus 352 ~vl~~~~v~~~It---HGG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~v 427 (470)
.+++.+++.++-+ +.|.| ++.||+++|+|+|+..........-. + -+.|..+.. -+.+++.++|.++
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~-----~d~~~~~~~i~~l 329 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPP-----GDPAALAEAIRRL 329 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCC-----CCHHHHHHHHHHH
Confidence 4888888833323 23444 78999999999999776655543333 2 467777753 5899999999999
Q ss_pred hcCCHHHHH
Q 041902 428 MGEGDEFRG 436 (470)
Q Consensus 428 l~~~~~~r~ 436 (470)
++ |++.++
T Consensus 330 ~~-~~~~~~ 337 (357)
T cd03795 330 LE-DPELRE 337 (357)
T ss_pred HH-CHHHHH
Confidence 99 875443
No 65
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.93 E-value=4.9e-06 Score=85.10 Aligned_cols=113 Identities=21% Similarity=0.296 Sum_probs=73.5
Q ss_pred hCCCeEEeeccChhhh---cccc----ccccceecc---C-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeE
Q 041902 338 LNEKGMIVPWCSQVEV---LSHE----AVGCFVTHC---G-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVR 406 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~v---l~~~----~v~~~ItHG---G-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~ 406 (470)
+.+++...+++++.++ ++.+ ++ ||... | -.+++||+++|+|+|+.... .....+.+ -..|..
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~-~~~G~l 387 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIAN-CRNGLL 387 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcC-CCcEEE
Confidence 4577877788876554 5544 55 77653 3 35899999999999988643 34455554 456887
Q ss_pred eeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 407 VKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 407 l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
++. -+.+++.++|.++++ |+..+ +++++..++.+...-+-...++++.+-|
T Consensus 388 v~~-----~d~~~la~~i~~ll~-~~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 388 VDV-----LDLEAIASALEDALS-DSSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred eCC-----CCHHHHHHHHHHHHh-CHHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 764 578999999999999 87543 3333333333333455555555555443
No 66
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.92 E-value=5.4e-06 Score=83.29 Aligned_cols=85 Identities=19% Similarity=0.245 Sum_probs=61.4
Q ss_pred hCCCeEEeeccChh---hhccccccccceec---cC-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFVTH---CG-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~ItH---GG-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
+.+++.+.+++|.. .++..+++ ++.. -| ..++.||+++|+|+|+.-.. .....+.+ -+.|....
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~-~~~g~~~~-- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVD-GETGFLCE-- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhcc-CCceEEeC--
Confidence 34788989999875 46888888 6632 22 24789999999999987543 33445665 56677764
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEFRG 436 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~r~ 436 (470)
. +.+++.++|.++++ +++.++
T Consensus 349 ---~-~~~~~a~~i~~l~~-~~~~~~ 369 (392)
T cd03805 349 ---P-TPEEFAEAMLKLAN-DPDLAD 369 (392)
T ss_pred ---C-CHHHHHHHHHHHHh-ChHHHH
Confidence 2 78999999999999 775443
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.90 E-value=1.6e-05 Score=80.38 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=65.2
Q ss_pred CCCeEEeeccChh---hhcccccccccee---ccCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecC
Q 041902 339 NEKGMIVPWCSQV---EVLSHEAVGCFVT---HCGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 411 (470)
Q Consensus 339 ~~nv~v~~~vp~~---~vl~~~~v~~~It---HGG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~ 411 (470)
.+++.+.+++|.. .+++.+++ +|. +.|. .++.||+++|+|+|+.... .....+.+ -+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~-~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVAD-GETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhcc-CCceEECCC--
Confidence 4678888999764 57989998 664 2333 5899999999999987543 34455665 567877763
Q ss_pred CCCcCHHHHHHHHHHHhcCCHHHHHHHHH
Q 041902 412 EGILESDEIKRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 412 ~~~~~~~~l~~~i~~vl~~~~~~r~~a~~ 440 (470)
-+.+++.+++.++++ ++..+++..+
T Consensus 353 ---~d~~~la~~i~~~l~-~~~~~~~~~~ 377 (405)
T TIGR03449 353 ---HDPADWADALARLLD-DPRTRIRMGA 377 (405)
T ss_pred ---CCHHHHHHHHHHHHh-CHHHHHHHHH
Confidence 478999999999999 8755444433
No 68
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.89 E-value=5.3e-06 Score=82.12 Aligned_cols=113 Identities=24% Similarity=0.263 Sum_probs=73.5
Q ss_pred hCCCeEEeeccC-h---hhhccccccccceecc----CchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeee
Q 041902 338 LNEKGMIVPWCS-Q---VEVLSHEAVGCFVTHC----GWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 338 ~~~nv~v~~~vp-~---~~vl~~~~v~~~ItHG----G~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
...++...+|++ + ..+++.+++ +|... ...++.||+++|+|+|+.... .....+.+ -+.|..+.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~-~~~g~~~~- 313 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDH-GVTGYLAK- 313 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeC-CCceEEeC-
Confidence 456788889998 4 346888888 77753 357999999999999986543 33344554 45677665
Q ss_pred cCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 410 NEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 410 ~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
..+.+++.+++.+++. +++.+++ +++..++.....-+.+...+++++-.
T Consensus 314 ----~~~~~~~~~~l~~l~~-~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 314 ----PGDPEDLAEGIEWLLA-DPDEREE---LGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred ----CCCHHHHHHHHHHHHh-CHHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3578999999999999 8753332 22222222223355555555555443
No 69
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.83 E-value=6.3e-06 Score=79.98 Aligned_cols=301 Identities=14% Similarity=0.107 Sum_probs=162.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc--chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF--AYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~--~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||.|--... -|+.=+-.+.++|.++||+|.+.+-+. ..+.+ +. .|+.+..+...-.. ...
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL-~~----yg~~y~~iG~~g~~-----------~~~ 63 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELL-DL----YGIDYIVIGKHGDS-----------LYG 63 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHH-HH----cCCCeEEEcCCCCC-----------HHH
Confidence 6675544322 288889999999999999999998654 34455 66 89999988642211 111
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCc
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDL 168 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 168 (470)
.... ......++++.+.+ .+||++|+- .+..+..+|..+|+|+|.+.=..-+... + .
T Consensus 64 Kl~~-~~~R~~~l~~~~~~---~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~---~---------------~ 120 (335)
T PF04007_consen 64 KLLE-SIERQYKLLKLIKK---FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQ---N---------------R 120 (335)
T ss_pred HHHH-HHHHHHHHHHHHHh---hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhcc---c---------------e
Confidence 1111 11223345555544 579999986 5678899999999999997432110000 0 0
Q ss_pred ccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEE-EcchHhhhHHHHHHhcCCCeeEeccccCC
Q 041902 169 IELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKIL-VNTFDALEAETLRAIDKFNMIAIGPLVAS 247 (470)
Q Consensus 169 ~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~l~~~~~~~~~~~~~~~vGpl~~~ 247 (470)
+.+| ....--.|..+.. ..+..+... +.+. .++..| +.|+-|+-
T Consensus 121 Lt~P---la~~i~~P~~~~~---------------~~~~~~G~~--~~i~~y~G~~E-------------~ayl~~F~-- 165 (335)
T PF04007_consen 121 LTLP---LADVIITPEAIPK---------------EFLKRFGAK--NQIRTYNGYKE-------------LAYLHPFK-- 165 (335)
T ss_pred eehh---cCCeeECCcccCH---------------HHHHhcCCc--CCEEEECCeee-------------EEeecCCC--
Confidence 0011 0000000000000 000000000 0111 222222 22333311
Q ss_pred CccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccc----cCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCC
Q 041902 248 ALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTIC----VLEKRQVEEIARGLLDSGHPFLWVIREHENKDK 323 (470)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 323 (470)
| + ++..+-+.. ++.+.|++=+-+.. ......+..+++.+++.+.. |+.++.. .
T Consensus 166 ---------------P-d-~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~-~--- 222 (335)
T PF04007_consen 166 ---------------P-D-PEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRY-E--- 222 (335)
T ss_pred ---------------C-C-hhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCC-c---
Confidence 1 3 333333432 24567777666533 12334577788999888766 4545443 2
Q ss_pred CCCchhhhHHHHHHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhc
Q 041902 324 DKGEDDVVMKYKEELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCK 402 (470)
Q Consensus 324 ~~~~~~~~~~~~~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~G 402 (470)
..++.++ .. ++.+. .-+....+|.++++ +|+-|| ....||...|+|.+.+ +.++-...-+.+.+ .|
T Consensus 223 -----~~~~~~~-~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~G 289 (335)
T PF04007_consen 223 -----DQRELFE-KY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KG 289 (335)
T ss_pred -----chhhHHh-cc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CC
Confidence 1121111 22 23333 55666689999999 999887 7889999999999974 22232233344665 66
Q ss_pred ceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 403 TGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 403 vG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
. ... .-+.+++.+.+.+.+.
T Consensus 290 l--l~~-----~~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 290 L--LYH-----STDPDEIVEYVRKNLG 309 (335)
T ss_pred C--eEe-----cCCHHHHHHHHHHhhh
Confidence 5 332 3577777775555544
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.83 E-value=2.8e-05 Score=76.58 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=69.7
Q ss_pred hCCCeEEeeccChhh---hccccccccceecc----CchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCSQVE---VLSHEAVGCFVTHC----GWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~---vl~~~~v~~~ItHG----G~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
..+++.+.+++++.+ ++..+++ +|.-. -..++.||+++|+|+|+.+.. .....+.+ +.|.....
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~- 330 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD- 330 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC-
Confidence 357888889998544 5888888 55432 245799999999999997543 34444442 67776653
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFV 463 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (470)
+.+++.+++.++++ +++.+++..+-+.+. +...-+....+++++
T Consensus 331 -----~~~~~~~~i~~l~~-~~~~~~~~~~~~~~~---~~~~~s~~~~~~~~~ 374 (375)
T cd03821 331 -----DVDALAAALRRALE-LPQRLKAMGENGRAL---VEERFSWTAIAQQLL 374 (375)
T ss_pred -----ChHHHHHHHHHHHh-CHHHHHHHHHHHHHH---HHHhcCHHHHHHHhh
Confidence 44999999999999 875444433333332 122345444444443
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.81 E-value=1.4e-05 Score=80.78 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCeEEeeccCh---hhhcccccccccee---ccCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecC
Q 041902 339 NEKGMIVPWCSQ---VEVLSHEAVGCFVT---HCGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 411 (470)
Q Consensus 339 ~~nv~v~~~vp~---~~vl~~~~v~~~It---HGG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~ 411 (470)
.+++.+.+++|+ ..+++.+++ +|. +-|.| ++.||+++|+|+|+.+..+ ....+.+ |-+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 466888899976 447888888 664 33444 9999999999999977643 2334443 4343222
Q ss_pred CCCcCHHHHHHHHHHHhcCCH
Q 041902 412 EGILESDEIKRCLELVMGEGD 432 (470)
Q Consensus 412 ~~~~~~~~l~~~i~~vl~~~~ 432 (470)
.+.+++.+++.+++. +.
T Consensus 318 ---~~~~~l~~~l~~~l~-~~ 334 (398)
T cd03796 318 ---PDVESIVRKLEEAIS-IL 334 (398)
T ss_pred ---CCHHHHHHHHHHHHh-Ch
Confidence 278999999999998 54
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.79 E-value=1e-05 Score=80.41 Aligned_cols=86 Identities=20% Similarity=0.225 Sum_probs=65.2
Q ss_pred hCCCeEEeeccChh---hhccccccccceec----------cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcce
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFVTH----------CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTG 404 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~ItH----------GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG 404 (470)
+.+++.+.+++|+. .+++.+++ +|.. |--+++.||+++|+|+|+.+.. .++..+.+ .+.|
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g 315 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETG 315 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCee
Confidence 45788888999864 45888888 6642 2346899999999999987654 35666666 6788
Q ss_pred eEeeecCCCCcCHHHHHHHHHHHhcCCHHHHH
Q 041902 405 VRVKANEEGILESDEIKRCLELVMGEGDEFRG 436 (470)
Q Consensus 405 ~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~ 436 (470)
..++. -+.+++.+++.++++ |++.++
T Consensus 316 ~~~~~-----~d~~~l~~~i~~l~~-~~~~~~ 341 (367)
T cd05844 316 LLVPE-----GDVAALAAALGRLLA-DPDLRA 341 (367)
T ss_pred EEECC-----CCHHHHHHHHHHHHc-CHHHHH
Confidence 87763 578999999999999 875333
No 73
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.74 E-value=3.7e-05 Score=75.75 Aligned_cols=84 Identities=20% Similarity=0.277 Sum_probs=62.3
Q ss_pred hCCCeEEeeccChh---hhcccccccccee----------ccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcce
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFVT----------HCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTG 404 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~It----------HGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG 404 (470)
.++|+.+.+++|+. .++..+++ +|. -|.-.++.||+++|+|+|+.+... ....+.+ -..|
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~-~~~g 306 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED-GETG 306 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC-CCce
Confidence 45788989999754 47777888 665 233468999999999999876432 3345554 4488
Q ss_pred eEeeecCCCCcCHHHHHHHHHHHhcCCHHH
Q 041902 405 VRVKANEEGILESDEIKRCLELVMGEGDEF 434 (470)
Q Consensus 405 ~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~ 434 (470)
..+.. -+.+++.+++.++++ ++..
T Consensus 307 ~~~~~-----~~~~~l~~~i~~~~~-~~~~ 330 (355)
T cd03799 307 LLVPP-----GDPEALADAIERLLD-DPEL 330 (355)
T ss_pred EEeCC-----CCHHHHHHHHHHHHh-CHHH
Confidence 88863 489999999999999 7753
No 74
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.73 E-value=4.3e-05 Score=75.39 Aligned_cols=306 Identities=14% Similarity=0.083 Sum_probs=157.4
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCccc-hhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHH
Q 041902 21 QGHINPALQLARRLIRIGTRVTFATTIFA-YRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALT 99 (470)
Q Consensus 21 ~GH~~P~l~la~~L~~~Gh~V~~~~~~~~-~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (470)
.|--.-+..||++|.++||+|++++.... ...+ +. .|++++.++... .+. ...+.. +.
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-~~----~~~~~~~~~~~~-------~~~-~~~~~~--------~~ 68 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAEL-EA----EGSRHIKLPFIS-------KNP-LRILLN--------VA 68 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHH-Hh----cCCeEEEccccc-------cch-hhhHHH--------HH
Confidence 45556788999999999999999986543 3334 55 677777765221 011 111111 11
Q ss_pred HHHHhhhhcCCCCccEEEeCCCc--hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCcccCCCCCCC
Q 041902 100 EIITGSENQGAQPFTCLVYSLLL--PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDLIELPGLPPL 177 (470)
Q Consensus 100 ~~~~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~ 177 (470)
.+.+.+.. .+||+|++.... +.+..+++.+++|++.........
T Consensus 69 ~l~~~~~~---~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~------------------------------- 114 (355)
T cd03819 69 RLRRLIRE---EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSV------------------------------- 114 (355)
T ss_pred HHHHHHHH---cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhh-------------------------------
Confidence 22333333 569999987533 234556677899988643211000
Q ss_pred CCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhc--CCCeeEeccccCCCccCCccc
Q 041902 178 TGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAID--KFNMIAIGPLVASALWDGKEL 255 (470)
Q Consensus 178 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~--~~~~~~vGpl~~~~~~~~~~~ 255 (470)
.. ... ..+..+ +.++..+....+.- ...+. ..++..++.-..........
T Consensus 115 --------------~~-------~~~---~~~~~~--~~vi~~s~~~~~~~-~~~~~~~~~k~~~i~ngi~~~~~~~~~- 166 (355)
T cd03819 115 --------------NF-------RYN---AIMARG--DRVIAVSNFIADHI-RENYGVDPDRIRVIPRGVDLDRFDPGA- 166 (355)
T ss_pred --------------HH-------HHH---HHHHhc--CEEEEeCHHHHHHH-HHhcCCChhhEEEecCCccccccCccc-
Confidence 00 000 112344 66666654443332 11221 12355555433321110000
Q ss_pred CCCCCCCCCChhHH---HHhhccCCCCceEEEEecccccC-CHHHHHHHHHHHHhCCCCE-EEEEecCCCCCCCCCchhh
Q 041902 256 YGGDLCKNSSKEYY---MEWLSSKPKSSVIYVAFGTICVL-EKRQVEEIARGLLDSGHPF-LWVIREHENKDKDKGEDDV 330 (470)
Q Consensus 256 ~~~~~~~~~~~~~~---~~~l~~~~~~~vV~vs~GS~~~~-~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~ 330 (470)
. ..... .+-... ++...+++..|..... ..+.+-.++..+...+.++ +++++.+ ... + ..
T Consensus 167 -------~-~~~~~~~~~~~~~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~-~~~-~----~~ 231 (355)
T cd03819 167 -------V-PPERILALAREWPL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA-QGR-R----FY 231 (355)
T ss_pred -------c-chHHHHHHHHHcCC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC-ccc-c----hH
Confidence 0 00111 111111 2333566677776532 2344444555555433333 3334433 211 0 11
Q ss_pred hHHH---HH--HhCCCeEEeeccC-hhhhcccccccccee--ccCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhh
Q 041902 331 VMKY---KE--ELNEKGMIVPWCS-QVEVLSHEAVGCFVT--HCGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFC 401 (470)
Q Consensus 331 ~~~~---~~--~~~~nv~v~~~vp-~~~vl~~~~v~~~It--HGG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~ 401 (470)
...+ .+ ...+++.+.++.+ ...++..+++.++-+ +-|. .+++||+++|+|+|+... ......+.+ -
T Consensus 232 ~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~-~ 306 (355)
T cd03819 232 YAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRP-G 306 (355)
T ss_pred HHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhC-C
Confidence 1111 11 2346788888854 356888899833323 1233 599999999999998653 334556665 5
Q ss_pred cceeEeeecCCCCcCHHHHHHHHHHHhcCCHHH
Q 041902 402 KTGVRVKANEEGILESDEIKRCLELVMGEGDEF 434 (470)
Q Consensus 402 GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~ 434 (470)
+.|..+.. -+.+++.++|..++..+++.
T Consensus 307 ~~g~~~~~-----~~~~~l~~~i~~~~~~~~~~ 334 (355)
T cd03819 307 ETGLLVPP-----GDAEALAQALDQILSLLPEG 334 (355)
T ss_pred CceEEeCC-----CCHHHHHHHHHHHHhhCHHH
Confidence 57888763 58999999997665425543
No 75
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.72 E-value=6.7e-05 Score=73.54 Aligned_cols=109 Identities=28% Similarity=0.370 Sum_probs=69.5
Q ss_pred hCCCeEEeeccC-hhhhccccccccceeccC----chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCC
Q 041902 338 LNEKGMIVPWCS-QVEVLSHEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 412 (470)
Q Consensus 338 ~~~nv~v~~~vp-~~~vl~~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~ 412 (470)
+..++.+.+... ...+++.+++ +|..+. .+++.||+++|+|+|+.. ...+...+.+ .|..+..
T Consensus 249 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~--- 316 (365)
T cd03807 249 LEDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP--- 316 (365)
T ss_pred CCceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC---
Confidence 345666665443 4678888998 776544 379999999999999854 3444555543 4555653
Q ss_pred CCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
-+.+++.+++.++++ +++.++ ++++..++.+...-+-.....++.+
T Consensus 317 --~~~~~l~~~i~~l~~-~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~ 362 (365)
T cd03807 317 --GDPEALAEAIEALLA-DPALRQ---ALGEAARERIEENFSIEAMVEAYEE 362 (365)
T ss_pred --CCHHHHHHHHHHHHh-ChHHHH---HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 468999999999999 764332 2233333333334555555555554
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.70 E-value=5.2e-06 Score=82.56 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=81.0
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCCCE-EEEEecCCCCCCCCCchhhhHHHHH--HhCCCeEEeeccCh--hh---
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPF-LWVIREHENKDKDKGEDDVVMKYKE--ELNEKGMIVPWCSQ--VE--- 352 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~nv~v~~~vp~--~~--- 352 (470)
.+++..|.........+..+++++.....++ +++++.+ ... +.+. ...+ .+++++.+.+++++ ..
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g-~~~-----~~l~-~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDG-SDF-----EKCK-AYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCC-ccH-----HHHH-HHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 4556777765322234556666666643233 3345544 211 0221 1211 24578888888743 33
Q ss_pred hccccccccceec----cCchhhhhhhhcCCcEeecc-ccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHH
Q 041902 353 VLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFP-QWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELV 427 (470)
Q Consensus 353 vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P-~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~v 427 (470)
.+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+.+ -..|..++. -+.+++.++|.++
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~-~~~G~lv~~-----~d~~~la~~i~~l 321 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKP-GLNGELYTP-----GNIDEFVGKLNKV 321 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccC-CCceEEECC-----CCHHHHHHHHHHH
Confidence 3445677 6643 33569999999999999875 332 2245555 456877764 5899999999999
Q ss_pred hcCCHH
Q 041902 428 MGEGDE 433 (470)
Q Consensus 428 l~~~~~ 433 (470)
++ +++
T Consensus 322 ~~-~~~ 326 (359)
T PRK09922 322 IS-GEV 326 (359)
T ss_pred Hh-Ccc
Confidence 99 775
No 77
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.69 E-value=9.4e-06 Score=79.40 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=89.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHH--hCCCeEEeeccChh---hhccc
Q 041902 282 IYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEE--LNEKGMIVPWCSQV---EVLSH 356 (470)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~nv~v~~~vp~~---~vl~~ 356 (470)
+++..|.... ......+++++...+.++++ ++.+ ... +.......+. +.+++.+.+++++. .+++.
T Consensus 173 ~i~~~Gr~~~--~Kg~~~li~~~~~~~~~l~i-~G~~-~~~-----~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~ 243 (335)
T cd03802 173 YLLFLGRISP--EKGPHLAIRAARRAGIPLKL-AGPV-SDP-----DYFYREIAPELLDGPDIEYLGEVGGAEKAELLGN 243 (335)
T ss_pred EEEEEEeecc--ccCHHHHHHHHHhcCCeEEE-EeCC-CCH-----HHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHh
Confidence 3445677642 23355677777777766554 4433 211 0221112222 35889989999875 46888
Q ss_pred ccccccee--ccCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHH
Q 041902 357 EAVGCFVT--HCGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDE 433 (470)
Q Consensus 357 ~~v~~~It--HGG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~ 433 (470)
+++-++-+ +-|. .++.||+++|+|+|+.... .....+.+ -..|..++ . .+++.+++.+++. .+
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~-~~~g~l~~----~---~~~l~~~l~~l~~-~~- 309 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVED-GVTGFLVD----S---VEELAAAVARADR-LD- 309 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeC-CCcEEEeC----C---HHHHHHHHHHHhc-cH-
Confidence 88833222 2343 4799999999999987653 34445554 33676664 2 8999999999977 43
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 434 FRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 434 ~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
++++++... ..-+.+...+++++
T Consensus 310 -~~~~~~~~~-------~~~s~~~~~~~~~~ 332 (335)
T cd03802 310 -RAACRRRAE-------RRFSAARMVDDYLA 332 (335)
T ss_pred -HHHHHHHHH-------HhCCHHHHHHHHHH
Confidence 233333221 23565566666655
No 78
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.68 E-value=4.5e-05 Score=75.19 Aligned_cols=109 Identities=18% Similarity=0.237 Sum_probs=72.0
Q ss_pred hCCCeEEe-eccCh---hhhccccccccceec------cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEe
Q 041902 338 LNEKGMIV-PWCSQ---VEVLSHEAVGCFVTH------CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRV 407 (470)
Q Consensus 338 ~~~nv~v~-~~vp~---~~vl~~~~v~~~ItH------GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l 407 (470)
+.+++... .|+|+ ..+++.+++ +|.- |..++++||+++|+|+|+.+..+ ...+.+ -+.|..+
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~ 316 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLV 316 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEE
Confidence 45788777 45875 458888888 6632 34558899999999999987654 334554 5778777
Q ss_pred eecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 408 KANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
.. -+.+++.+++.++++ ++..+++ +++..++.... -+.+....++.+
T Consensus 317 ~~-----~d~~~~~~~l~~l~~-~~~~~~~---~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 317 PP-----GDPAALAEAIRRLLA-DPELAQA---LRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred cC-----CCHHHHHHHHHHHHc-ChHHHHH---HHHHHHHHHhh-CCHHHHHHHHHH
Confidence 64 468999999999999 8654433 33333333223 455555555544
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.68 E-value=9.4e-06 Score=79.04 Aligned_cols=89 Identities=21% Similarity=0.179 Sum_probs=62.0
Q ss_pred CCCeEEeeccCh-hhhccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCC
Q 041902 339 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEG 413 (470)
Q Consensus 339 ~~nv~v~~~vp~-~~vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~ 413 (470)
.+++.+.++.+. ..++..+++ +|.- |.-+++.||+++|+|+|+.... .....+.+ -+.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~-~~~g~~~~~---- 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILED-GENGLLVPV---- 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcC-CCceEEECC----
Confidence 467888888754 568888888 6632 3346799999999999986443 55667776 678888864
Q ss_pred CcCHHHH---HHHHHHHhcCCHHHHHHHHH
Q 041902 414 ILESDEI---KRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 414 ~~~~~~l---~~~i~~vl~~~~~~r~~a~~ 440 (470)
-+.+.+ .+.+.+++. ++..+++..+
T Consensus 314 -~~~~~~~~~~~~i~~~~~-~~~~~~~~~~ 341 (353)
T cd03811 314 -GDEAALAAAALALLDLLL-DPELRERLAA 341 (353)
T ss_pred -CCHHHHHHHHHHHHhccC-ChHHHHHHHH
Confidence 466666 666666676 6654444433
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.67 E-value=6.5e-05 Score=74.14 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCCeEEeeccCh-hhhccccccccceecc----CchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCC
Q 041902 339 NEKGMIVPWCSQ-VEVLSHEAVGCFVTHC----GWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEG 413 (470)
Q Consensus 339 ~~nv~v~~~vp~-~~vl~~~~v~~~ItHG----G~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~ 413 (470)
.+|+.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...+++ .| ..+.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g--~~~~----- 309 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SG--LIVP----- 309 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-Cc--eEeC-----
Confidence 467888877644 678888888 66543 256899999999999874 44555666664 44 4443
Q ss_pred CcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 041902 414 ILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFV 463 (470)
Q Consensus 414 ~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (470)
.-+.+++.+++.++++.++.+++....-++.+.+ .-+-+....++.
T Consensus 310 ~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~----~~s~~~~~~~~~ 355 (360)
T cd04951 310 ISDPEALANKIDEILKMSGEERDIIGARRERIVK----KFSINSIVQQWL 355 (360)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----hcCHHHHHHHHH
Confidence 2578999999999995255665544443333333 244444444444
No 81
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.65 E-value=8.9e-06 Score=79.56 Aligned_cols=160 Identities=14% Similarity=0.057 Sum_probs=94.4
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHhCCCC-EEEEEecCCCCCCCCCchhhhHHHHHHhC--CCeEEeeccChhhhccc
Q 041902 280 SVIYVAFGTICVLEKRQVEEIARGLLDSGHP-FLWVIREHENKDKDKGEDDVVMKYKEELN--EKGMIVPWCSQVEVLSH 356 (470)
Q Consensus 280 ~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~v~~~vp~~~vl~~ 356 (470)
++|.+--||-...-...+-.++++....... .++++... . .. +.+.+... ..+.+.+ .-.+++..
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a-~--------~~-~~i~~~~~~~~~~~~~~--~~~~~m~~ 235 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF-F--------KG-KDLKEIYGDISEFEISY--DTHKALLE 235 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC-C--------cH-HHHHHHHhcCCCcEEec--cHHHHHHh
Confidence 6899999997643334444444444443221 33444332 1 11 22222222 1222332 33568988
Q ss_pred cccccceeccCchhhhhhhhcCCcEeeccc--cchhhHHHHHHHh--hhcceeEeee----cC------CCCcCHHHHHH
Q 041902 357 EAVGCFVTHCGWNSSLESLVCGVPVVAFPQ--WTDQGTNAKIIVD--FCKTGVRVKA----NE------EGILESDEIKR 422 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~eal~~GvP~v~~P~--~~DQ~~nA~rl~~--~~GvG~~l~~----~~------~~~~~~~~l~~ 422 (470)
||+ +|+-.|..|. |+...|+|||+ +. ..=|+.||+++.+ |.|+...+.. ++ .++.|++.|.+
T Consensus 236 aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 236 AEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 998 9999999999 99999999988 43 3468999999993 2565544421 00 25789999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 041902 423 CLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAF 462 (470)
Q Consensus 423 ~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (470)
++.+ .. ...+++...++++.+. ++.+.+..+.+
T Consensus 312 ~i~~-~~-~~~~~~~~~~l~~~l~-----~~a~~~~A~~i 344 (347)
T PRK14089 312 AYKE-MD-REKFFKKSKELREYLK-----HGSAKNVAKIL 344 (347)
T ss_pred HHHH-HH-HHHHHHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 9987 33 3355555555555542 24555544433
No 82
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.62 E-value=7.3e-05 Score=73.82 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=63.0
Q ss_pred hCCCeEEeeccCh-hhhccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCC
Q 041902 338 LNEKGMIVPWCSQ-VEVLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 412 (470)
Q Consensus 338 ~~~nv~v~~~vp~-~~vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~ 412 (470)
..+++...++..+ ..++..+++ +|.- |-..+++||+++|+|+|+....+ ....+.+ +.|....
T Consensus 247 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~---- 314 (358)
T cd03812 247 LEDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL---- 314 (358)
T ss_pred CCCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC----
Confidence 3477888877543 668888888 6654 44578999999999999876544 3344453 5555554
Q ss_pred CCcCHHHHHHHHHHHhcCCHHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~~~~~r~~a~~ 440 (470)
.-+.+++.++|.+++. ++..+++...
T Consensus 315 -~~~~~~~a~~i~~l~~-~~~~~~~~~~ 340 (358)
T cd03812 315 -DESPEIWAEEILKLKS-EDRRERSSES 340 (358)
T ss_pred -CCCHHHHHHHHHHHHh-Ccchhhhhhh
Confidence 2358999999999999 8865554433
No 83
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.61 E-value=8.8e-06 Score=80.90 Aligned_cols=130 Identities=13% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHh--CCCeEEeecc---C
Q 041902 278 KSSVIYVAFGTIC---VLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEEL--NEKGMIVPWC---S 349 (470)
Q Consensus 278 ~~~vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~nv~v~~~v---p 349 (470)
+++.|+|++=... ....+.+..+++++...+.+++++.+.+ +... ......+.+.. .+|+.+.+.+ .
T Consensus 200 ~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~-~p~~----~~i~~~i~~~~~~~~~v~l~~~l~~~~ 274 (365)
T TIGR03568 200 DKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA-DAGS----RIINEAIEEYVNEHPNFRLFKSLGQER 274 (365)
T ss_pred CCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC-CCCc----hHHHHHHHHHhcCCCCEEEECCCChHH
Confidence 3468888885432 2335678899999988876666665544 2110 01222222222 3678887554 5
Q ss_pred hhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeE-eeecCCCCcCHHHHHHHHHHHh
Q 041902 350 QVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVR-VKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 350 ~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~-l~~~~~~~~~~~~l~~~i~~vl 428 (470)
...++++|++ +|+-++.|. .||...|+|.|.+- +.+ .-++ .|-.+. + ..++++|.+++++++
T Consensus 275 ~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~~--~g~nvl~v------g~~~~~I~~a~~~~~ 337 (365)
T TIGR03568 275 YLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGRL--RADSVIDV------DPDKEEIVKAIEKLL 337 (365)
T ss_pred HHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhhh--hcCeEEEe------CCCHHHHHHHHHHHh
Confidence 5778999999 999886555 99999999999874 211 1111 233322 3 357899999999955
Q ss_pred c
Q 041902 429 G 429 (470)
Q Consensus 429 ~ 429 (470)
.
T Consensus 338 ~ 338 (365)
T TIGR03568 338 D 338 (365)
T ss_pred C
Confidence 5
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.58 E-value=0.00033 Score=70.23 Aligned_cols=162 Identities=20% Similarity=0.244 Sum_probs=89.7
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhC--CCCEEEEEecCCCCCCCCCchhhhHHHHHH---hC---CCeEEe-eccCh-
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDS--GHPFLWVIREHENKDKDKGEDDVVMKYKEE---LN---EKGMIV-PWCSQ- 350 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~nv~v~-~~vp~- 350 (470)
.+++..|.... ...+..+++++... +.+++++.+.. ... .+.+.+.+. .. .++... +++++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~-~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAP-DTP------EVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCC-CcH------HHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 34556677653 23355566666654 34544443322 111 222222221 11 234443 66765
Q ss_pred --hhhccccccccceec---cC-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcC----HHHH
Q 041902 351 --VEVLSHEAVGCFVTH---CG-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILE----SDEI 420 (470)
Q Consensus 351 --~~vl~~~~v~~~ItH---GG-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~----~~~l 420 (470)
..++..+|+ +|.- -| ..++.||+++|+|+|+... ......+++ -+.|..++. ++.+ .+++
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~---~~~~~~~~~~~l 342 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPP---DNSDADGFQAEL 342 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCC---CCCcccchHHHH
Confidence 446888888 7653 23 3467999999999998754 345566665 567888875 2221 2899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 421 KRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 421 ~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
.++|.+++. |++-+++.. +..++.+...-+-+....++++-
T Consensus 343 ~~~i~~l~~-~~~~~~~~~---~~a~~~~~~~~s~~~~~~~~~~~ 383 (388)
T TIGR02149 343 AKAINILLA-DPELAKKMG---IAGRKRAEEEFSWGSIAKKTVEM 383 (388)
T ss_pred HHHHHHHHh-CHHHHHHHH---HHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999 875443322 22222222234444555555543
No 85
>PLN02275 transferase, transferring glycosyl groups
Probab=98.56 E-value=0.00017 Score=72.03 Aligned_cols=123 Identities=7% Similarity=-0.097 Sum_probs=69.9
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCccch---hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCch
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGT-RVTFATTIFAY---RRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPR 84 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh-~V~~~~~~~~~---~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 84 (470)
++-++.+++.+-.|.-..+..++..|.++|| +|++++.+... +.. +. .|++.+.++. +......... .
T Consensus 3 ~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~-~~----~~v~v~r~~~--~~~~~~~~~~-~ 74 (371)
T PLN02275 3 RRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL-NH----PSIHIHLMVQ--PRLLQRLPRV-L 74 (371)
T ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh-cC----CcEEEEECCC--cccccccccc-h
Confidence 4446666666889999999999999999986 79999865433 222 33 6788888864 2111111111 2
Q ss_pred hhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch-----hHHHHHHHcCCCeEEEec
Q 041902 85 RYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLP-----WTAEVARAYHLPSALLWI 141 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~-----~~~~~A~~~giP~i~~~~ 141 (470)
..+..+.. ....+..++..+.... .+||+|++....+ .+..+++..++|++..+.
T Consensus 75 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 75 YALALLLK-VAIQFLMLLWFLCVKI-PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhC-CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 21111111 1112222222221111 5799998853221 345567778999987533
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.55 E-value=0.00013 Score=72.02 Aligned_cols=154 Identities=19% Similarity=0.227 Sum_probs=85.6
Q ss_pred EEEecccccCCHHHHHHHHHHHHhCC--CCEEEEEecCCCCCCCCCchhhhHHHH--HHhCCCeEEeeccChhh---hcc
Q 041902 283 YVAFGTICVLEKRQVEEIARGLLDSG--HPFLWVIREHENKDKDKGEDDVVMKYK--EELNEKGMIVPWCSQVE---VLS 355 (470)
Q Consensus 283 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nv~v~~~vp~~~---vl~ 355 (470)
++..|+.... ..+..+++++.... .++ +.++.+ .... ..-..+. ....+++.+.+++|+.+ ++.
T Consensus 196 i~~~G~~~~~--Kg~~~li~a~~~l~~~~~l-~ivG~~-~~~~-----~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~ 266 (363)
T cd04955 196 YLLVGRIVPE--NNIDDLIEAFSKSNSGKKL-VIVGNA-DHNT-----PYGKLLKEKAAADPRIIFVGPIYDQELLELLR 266 (363)
T ss_pred EEEEeccccc--CCHHHHHHHHHhhccCceE-EEEcCC-CCcc-----hHHHHHHHHhCCCCcEEEccccChHHHHHHHH
Confidence 3456876632 33555666666654 343 344443 1110 2222222 13457898889998864 566
Q ss_pred ccccccceeccCc-----hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcC
Q 041902 356 HEAVGCFVTHCGW-----NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGE 430 (470)
Q Consensus 356 ~~~v~~~ItHGG~-----gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~ 430 (470)
.+++ ++.+.-. .++.||+++|+|+|+..... +...+.+ .|..... . +.+.+++.++++
T Consensus 267 ~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~---~g~~~~~---~----~~l~~~i~~l~~- 329 (363)
T cd04955 267 YAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGD---KAIYFKV---G----DDLASLLEELEA- 329 (363)
T ss_pred hCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecC---CeeEecC---c----hHHHHHHHHHHh-
Confidence 6777 6555433 37899999999999876442 2222222 2333332 1 129999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 431 GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 431 ~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
+++.+++ +++..++.....-+-....+++++-
T Consensus 330 ~~~~~~~---~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 330 DPEEVSA---MAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred CHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8744333 3333333333345555666666553
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.50 E-value=0.00038 Score=69.47 Aligned_cols=110 Identities=19% Similarity=0.135 Sum_probs=70.8
Q ss_pred CCeEEeeccC-hhhhcccccccccee--c--cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCC
Q 041902 340 EKGMIVPWCS-QVEVLSHEAVGCFVT--H--CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 414 (470)
Q Consensus 340 ~nv~v~~~vp-~~~vl~~~~v~~~It--H--GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~ 414 (470)
.++.+.++.. -..+++.+|+ +|. + |--.++.||+++|+|+|+.... .+...+.+ -..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~-~~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQH-GVTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcC-CCceEEeCC-----
Confidence 5566555543 3678888998 663 3 4456999999999999997653 34555555 456777753
Q ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 041902 415 LESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDD 465 (470)
Q Consensus 415 ~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (470)
-+.+++.+++.++++ ++..+.. +++..++.+...-+.....+++++-
T Consensus 323 ~d~~~la~~i~~l~~-~~~~~~~---~~~~a~~~~~~~fs~~~~~~~~~~~ 369 (374)
T TIGR03088 323 GDAVALARALQPYVS-DPAARRA---HGAAGRARAEQQFSINAMVAAYAGL 369 (374)
T ss_pred CCHHHHHHHHHHHHh-CHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 578999999999999 8754332 2222222222335555555555543
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.49 E-value=0.00015 Score=71.33 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=64.0
Q ss_pred hCCCeEEeeccChh---hhccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
.++++.+.+++|+. .++..+++ +|.. |..+++.||+++|+|+|+..... ....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC---ceeeeCC-
Confidence 55888888999775 56888888 5533 33458999999999999865432 2222232 3445543
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEFRGNSLKWKDL 444 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~ 444 (470)
-+.+++.+++.+++. |+..+.+..+-+..
T Consensus 321 ----~~~~~~~~~i~~l~~-~~~~~~~~~~~~~~ 349 (365)
T cd03809 321 ----LDPEALAAAIERLLE-DPALREELRERGLA 349 (365)
T ss_pred ----CCHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 478999999999999 88776665554443
No 89
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.49 E-value=0.00013 Score=74.00 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=72.1
Q ss_pred EEEecccccCCHHHHHHHHHHHHhC---CCCE-EEEEecCCCCCCCCCchhhhHHHHHHh---CCCeE-EeeccChhhhc
Q 041902 283 YVAFGTICVLEKRQVEEIARGLLDS---GHPF-LWVIREHENKDKDKGEDDVVMKYKEEL---NEKGM-IVPWCSQVEVL 354 (470)
Q Consensus 283 ~vs~GS~~~~~~~~~~~~~~al~~~---~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~nv~-v~~~vp~~~vl 354 (470)
++..|-+.. ...+..+++++... ...+ +++++.+ + ..+.+++.. +-++. ..++.+...++
T Consensus 231 ~l~vGRL~~--eK~~~~Li~a~~~l~~~~~~~~l~ivGdG-p---------~~~~L~~~a~~l~l~~~vf~G~~~~~~~~ 298 (462)
T PLN02846 231 AYYIGKMVW--SKGYKELLKLLHKHQKELSGLEVDLYGSG-E---------DSDEVKAAAEKLELDVRVYPGRDHADPLF 298 (462)
T ss_pred EEEEecCcc--cCCHHHHHHHHHHHHhhCCCeEEEEECCC-c---------cHHHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence 334566653 23355555555432 1223 5556666 2 223333322 21222 33666667799
Q ss_pred cccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcC
Q 041902 355 SHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGE 430 (470)
Q Consensus 355 ~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~ 430 (470)
..+|+ ||.- +=..++.||+++|+|+|+.-..+ + ..+.+ -+-|...+ +.+++.+++.++|+
T Consensus 299 ~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~~-------~~~~~a~ai~~~l~- 362 (462)
T PLN02846 299 HDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTYD-------DGKGFVRATLKALA- 362 (462)
T ss_pred HhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEecC-------CHHHHHHHHHHHHc-
Confidence 88888 9877 34458899999999999986442 2 33433 23343332 68899999999998
Q ss_pred CH
Q 041902 431 GD 432 (470)
Q Consensus 431 ~~ 432 (470)
++
T Consensus 363 ~~ 364 (462)
T PLN02846 363 EE 364 (462)
T ss_pred cC
Confidence 54
No 90
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.47 E-value=0.00041 Score=71.61 Aligned_cols=188 Identities=14% Similarity=0.084 Sum_probs=100.4
Q ss_pred CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHH--hC--CCC
Q 041902 235 KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLL--DS--GHP 310 (470)
Q Consensus 235 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~--~~--~~~ 310 (470)
+.++.|||..+.+.-.. .+ ++++..+-+.-.+++++|-+-.||-...=...+-.++++.+ .. +.+
T Consensus 380 gv~v~yVGHPL~d~i~~----------~~-~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~ 448 (608)
T PRK01021 380 PLRTVYLGHPLVETISS----------FS-PNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQ 448 (608)
T ss_pred CCCeEEECCcHHhhccc----------CC-CHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeE
Confidence 67899999666552110 00 22333333433456789999999965322334555565655 32 234
Q ss_pred EEEEEecCCCCCCCCCchhhhHHHHHHhC-C---CeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeecc-
Q 041902 311 FLWVIREHENKDKDKGEDDVVMKYKEELN-E---KGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFP- 385 (470)
Q Consensus 311 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P- 385 (470)
+++..... ...+.+++.+. . ++.++.--...+++..|++ .+.-.|. .|+|+...|+|||++=
T Consensus 449 fvvp~a~~----------~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK 515 (608)
T PRK01021 449 LLVSSANP----------KYDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQ 515 (608)
T ss_pred EEEecCch----------hhHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEe
Confidence 44432221 11122222222 1 2233211012578988998 8888774 5689999999998853
Q ss_pred ccchhhHHHHHHHh----hhc-----ceeEeeecCC---CCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 041902 386 QWTDQGTNAKIIVD----FCK-----TGVRVKANEE---GILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREA 448 (470)
Q Consensus 386 ~~~DQ~~nA~rl~~----~~G-----vG~~l~~~~~---~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~ 448 (470)
...=-+..|+++.+ |.| +|..+-+|=- ++.|++.|.+++ ++|. |++.+++.++=-+++++.
T Consensus 516 ~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~-d~~~r~~~~~~l~~lr~~ 588 (608)
T PRK01021 516 LRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILK-TSQSKEKQKDACRDLYQA 588 (608)
T ss_pred cCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhc-CHHHHHHHHHHHHHHHHH
Confidence 22233455666664 111 2222222111 478999999997 8888 775444444433344433
No 91
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.46 E-value=6.6e-06 Score=81.00 Aligned_cols=192 Identities=17% Similarity=0.169 Sum_probs=102.2
Q ss_pred CeEEEcchHhhhHHHHHHhcCCCeeEeccccCCCccCCcccCCCCCCCCCChhHH-H-HhhccCCCCceEEEEecccccC
Q 041902 215 PKILVNTFDALEAETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYY-M-EWLSSKPKSSVIYVAFGTICVL 292 (470)
Q Consensus 215 ~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~vV~vs~GS~~~~ 292 (470)
++.+.++-...+.-...-.+..+++.+|.+.-+.-...... ..+.. . ..+.. .+++.++|++=.....
T Consensus 124 ~lhf~~t~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~---------~~~~~~~~~i~~~-~~~~~iLvt~H~~t~~ 193 (346)
T PF02350_consen 124 HLHFAPTEEARERLLQEGEPPERIFVVGNPGIDALLQNKEE---------IEEKYKNSGILQD-APKPYILVTLHPVTNE 193 (346)
T ss_dssp SEEEESSHHHHHHHHHTT--GGGEEE---HHHHHHHHHHHT---------TCC-HHHHHHHHC-TTSEEEEEE-S-CCCC
T ss_pred hhhccCCHHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHH---------HhhhhhhHHHHhc-cCCCEEEEEeCcchhc
Confidence 67777776665543222221346999997765521100000 00111 1 22222 5677999998554443
Q ss_pred C-H---HHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCchhhhHHHHHHhC--CCeEEeecc---Chhhhccccccccc
Q 041902 293 E-K---RQVEEIARGLLDS-GHPFLWVIREHENKDKDKGEDDVVMKYKEELN--EKGMIVPWC---SQVEVLSHEAVGCF 362 (470)
Q Consensus 293 ~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~nv~v~~~v---p~~~vl~~~~v~~~ 362 (470)
. . ..+..++.++... +.++||..... + .....+.+.+. +|+.++..+ ....+|+++++ +
T Consensus 194 ~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~-p--------~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~--v 262 (346)
T PF02350_consen 194 DNPERLEQILEALKALAERQNVPVIFPLHNN-P--------RGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADL--V 262 (346)
T ss_dssp THH--HHHHHHHHHHHHHHTTEEEEEE--S--H--------HHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESE--E
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEEecCC-c--------hHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceE--E
Confidence 3 2 3455566666665 67788877744 2 22222222222 589888555 45778999999 9
Q ss_pred eeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHH
Q 041902 363 VTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 363 ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~ 440 (470)
|+-.| |-.-||..+|+|.|.+ -|+...=.-+. .|-.+.+ ..+.++|.+++++++. ++.+.++...
T Consensus 263 vgdSs-GI~eEa~~lg~P~v~i---R~~geRqe~r~--~~~nvlv------~~~~~~I~~ai~~~l~-~~~~~~~~~~ 327 (346)
T PF02350_consen 263 VGDSS-GIQEEAPSLGKPVVNI---RDSGERQEGRE--RGSNVLV------GTDPEAIIQAIEKALS-DKDFYRKLKN 327 (346)
T ss_dssp EESSH-HHHHHGGGGT--EEEC---SSS-S-HHHHH--TTSEEEE------TSSHHHHHHHHHHHHH--HHHHHHHHC
T ss_pred EEcCc-cHHHHHHHhCCeEEEe---cCCCCCHHHHh--hcceEEe------CCCHHHHHHHHHHHHh-ChHHHHhhcc
Confidence 99999 4444999999999999 33333333333 3555443 2689999999999999 6444444443
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=0.002 Score=68.88 Aligned_cols=95 Identities=17% Similarity=0.255 Sum_probs=65.6
Q ss_pred hCCCeEEeeccCh-hhhcccccccccee---ccCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCC
Q 041902 338 LNEKGMIVPWCSQ-VEVLSHEAVGCFVT---HCGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 412 (470)
Q Consensus 338 ~~~nv~v~~~vp~-~~vl~~~~v~~~It---HGG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~ 412 (470)
+.++|.+.+|.+. ..+++.+++ +|. +.|. +++.||+.+|+|+|+.... .....+.+ -..|..+..
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~d-g~~GlLv~~--- 641 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQE-GVTGLTLPA--- 641 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccC-CCCEEEeCC---
Confidence 3477888888765 557888888 665 4553 5889999999999997653 34555665 446888876
Q ss_pred CCcCHHHHHHHHHHHhcC---CHHHHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGE---GDEFRGNSLKWK 442 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~---~~~~r~~a~~~~ 442 (470)
++.+.+++.+++.+++.. ++.+++++++..
T Consensus 642 ~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 642 DTVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 556666777776665541 566766665544
No 93
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.40 E-value=0.001 Score=67.28 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=74.2
Q ss_pred hCCCeEEeeccChh---hhccccccccceec---------cCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcce
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFVTH---------CGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTG 404 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~ItH---------GG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG 404 (470)
+.+++.+.+|+|+. .++..+++ +|.- -|. .+++||+++|+|+|+.... .....+.+ -..|
T Consensus 277 l~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~-~~~G 349 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEA-DKSG 349 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcC-CCce
Confidence 34778888999875 47888888 6653 344 4689999999999987543 34455554 4577
Q ss_pred eEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 405 VRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 405 ~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
..++. -+.+++.++|.++++.|++. .+++++..++.+...-+.+....++.+-+
T Consensus 350 ~lv~~-----~d~~~la~ai~~l~~~d~~~---~~~~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 350 WLVPE-----NDAQALAQRLAAFSQLDTDE---LAPVVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred EEeCC-----CCHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77763 57999999999998723332 22333333333333455556655555544
No 94
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.35 E-value=0.00076 Score=68.04 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=69.5
Q ss_pred CCCeEEeeccCh-hhhccccccccce--ec--cCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCC
Q 041902 339 NEKGMIVPWCSQ-VEVLSHEAVGCFV--TH--CGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 412 (470)
Q Consensus 339 ~~nv~v~~~vp~-~~vl~~~~v~~~I--tH--GG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~ 412 (470)
.+++.+.++++. ..++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. .+. .|.|..+.
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~-~~~g~lv~---- 346 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DAL-PGAELLVA---- 346 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----ccc-CCcceEeC----
Confidence 467888899875 557888888 66 32 4554 5999999999999987543221 122 45666653
Q ss_pred CCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
-+.+++.++|.++++ |++.+++ +++..++.+...-+-+..++++.+
T Consensus 347 --~~~~~la~ai~~ll~-~~~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~ 392 (397)
T TIGR03087 347 --ADPADFAAAILALLA-NPAEREE---LGQAARRRVLQHYHWPRNLARLDA 392 (397)
T ss_pred --CCHHHHHHHHHHHHc-CHHHHHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 478999999999999 8754433 222322222223454555555443
No 95
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.00013 Score=70.82 Aligned_cols=333 Identities=14% Similarity=0.090 Sum_probs=179.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCccch--hhhcCCCCCCCCceEEEcC-CCCCCCCCCCCCCchh
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIG-TRVTFATTIFAY--RRMANSPTPEDGLSFASFS-DGYDDGFNSKQNDPRR 85 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~G-h~V~~~~~~~~~--~~v~~~~~~~~g~~~~~i~-~~~~~~~~~~~~~~~~ 85 (470)
+||| ++.+|++=.+.-+-+|.+++.+.+ .+..++.+.... +.. . .-++...++ +.+.-..... ..
T Consensus 3 ~~Kv-~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~-~-----~~le~~~i~~pdy~L~i~~~----~~ 71 (383)
T COG0381 3 MLKV-LTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEML-D-----QVLELFGIRKPDYDLNIMKP----GQ 71 (383)
T ss_pred ceEE-EEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHH-H-----HHHHHhCCCCCCcchhcccc----CC
Confidence 4454 445688888999999999999997 776666666555 222 1 112222232 1221111111 11
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeC--CCc-hhHHHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccc
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYS--LLL-PWTAEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIE 162 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d--~~~-~~~~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (470)
-+......+...+.+++++ .+||+|+.. ..+ .+++.+|.+.+||+.-+-.+.
T Consensus 72 tl~~~t~~~i~~~~~vl~~------~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl------------------- 126 (383)
T COG0381 72 TLGEITGNIIEGLSKVLEE------EKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL------------------- 126 (383)
T ss_pred CHHHHHHHHHHHHHHHHHh------hCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc-------------------
Confidence 2222333344455555554 569999884 333 356899999999988753321
Q ss_pred cccCCcccCCCCCCCCCCC--CCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeE
Q 041902 163 EKVNDLIELPGLPPLTGWD--LPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIA 240 (470)
Q Consensus 163 ~~~~~~~~~p~~~~~~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 240 (470)
+.-+ +++-+.| . ....+ + +..+.++-..-+...-+..+..+++.
T Consensus 127 ---------------Rt~~~~~PEE~NR----~-----------l~~~~--S--~~hfapte~ar~nLl~EG~~~~~Ifv 172 (383)
T COG0381 127 ---------------RTGDLYFPEEINR----R-----------LTSHL--S--DLHFAPTEIARKNLLREGVPEKRIFV 172 (383)
T ss_pred ---------------ccCCCCCcHHHHH----H-----------HHHHh--h--hhhcCChHHHHHHHHHcCCCccceEE
Confidence 0000 1111111 0 00000 1 33333332222211111111223777
Q ss_pred eccccCCCccCCcccCCCCCCCCCChhHHHHh-hccCCCCceEEEEecccccCCHHHHHHHHH----HHHhCCCCEEEEE
Q 041902 241 IGPLVASALWDGKELYGGDLCKNSSKEYYMEW-LSSKPKSSVIYVAFGTICVLEKRQVEEIAR----GLLDSGHPFLWVI 315 (470)
Q Consensus 241 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~----al~~~~~~~i~~~ 315 (470)
+|-...+.-.-. .. . .+. + ...... +.. +.+..++||+=-..... +.++.+.. ..+.. ..+.++.
T Consensus 173 tGnt~iDal~~~-~~---~-~~~-~-~~~~~~~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viy 242 (383)
T COG0381 173 TGNTVIDALLNT-RD---R-VLE-D-SKILAKGLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIY 242 (383)
T ss_pred eCChHHHHHHHH-Hh---h-hcc-c-hhhHHhhhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEE
Confidence 775554410000 00 0 000 1 112211 222 34458888865433332 33444444 44444 4566666
Q ss_pred ecCCCCCCCCCchhhhHHHHHHhC--CCeEEe---eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchh
Q 041902 316 REHENKDKDKGEDDVVMKYKEELN--EKGMIV---PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQ 390 (470)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~--~nv~v~---~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ 390 (470)
+.+ ... .+..-....+. .|+.+. +|.++..++.+|-+ ++|-.| |-.=||-..|+|.+++=...++
T Consensus 243 p~H-~~~------~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TER 312 (383)
T COG0381 243 PVH-PRP------RVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTER 312 (383)
T ss_pred eCC-CCh------hhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCC
Confidence 666 322 22111123444 457776 67789999999988 999988 6678999999999999999999
Q ss_pred hHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041902 391 GTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDL 444 (470)
Q Consensus 391 ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~ 444 (470)
|. +++ .|.-+.+. .+.+.|.+++.++++ ++++.++-+....-
T Consensus 313 PE---~v~--agt~~lvg------~~~~~i~~~~~~ll~-~~~~~~~m~~~~np 354 (383)
T COG0381 313 PE---GVE--AGTNILVG------TDEENILDAATELLE-DEEFYERMSNAKNP 354 (383)
T ss_pred cc---cee--cCceEEeC------ccHHHHHHHHHHHhh-ChHHHHHHhcccCC
Confidence 98 333 56666665 477999999999999 88766654444433
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.33 E-value=0.00058 Score=67.40 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=113.4
Q ss_pred CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHh---CCCCE
Q 041902 235 KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLD---SGHPF 311 (470)
Q Consensus 235 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~---~~~~~ 311 (470)
+.++.|||..+.+.-.+.. .+....+.+ -.+++++|.+--||-...=...+-.++++.+. ...++
T Consensus 152 g~~~~~VGHPl~d~~~~~~-----------~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l 219 (373)
T PF02684_consen 152 GVPVTYVGHPLLDEVKPEP-----------DRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDL 219 (373)
T ss_pred CCCeEEECCcchhhhccCC-----------CHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 5679999966555211100 112333333 23567799999999653222233334444333 32233
Q ss_pred EEEEecCCCCCCCCCchhhhHHHH---HHhCCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeecc-c
Q 041902 312 LWVIREHENKDKDKGEDDVVMKYK---EELNEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFP-Q 386 (470)
Q Consensus 312 i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P-~ 386 (470)
.++++.. +. .....+. .....++.+. ..-.-.++|..+++ .+.-.| -.|+|+...|+|||++= .
T Consensus 220 ~fvvp~a-~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 220 QFVVPVA-PE-------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKV 288 (373)
T ss_pred EEEEecC-CH-------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcC
Confidence 3333332 11 2212111 1223333333 22245668888888 777777 45789999999998874 2
Q ss_pred cchhhHHHHHHHhhhc-cee-------EeeecC-CCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 041902 387 WTDQGTNAKIIVDFCK-TGV-------RVKANE-EGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYK 457 (470)
Q Consensus 387 ~~DQ~~nA~rl~~~~G-vG~-------~l~~~~-~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~ 457 (470)
..=.+..|+++.+ .. +|+ .+-++= -++.|++.|.+++.++|. |+..++......+.+.+..+.+.++..
T Consensus 289 ~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 289 SPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLE-NPEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred cHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 3345566777755 33 111 111100 267899999999999999 887777777777777776666666655
Q ss_pred HH
Q 041902 458 NL 459 (470)
Q Consensus 458 ~~ 459 (470)
+.
T Consensus 367 ~~ 368 (373)
T PF02684_consen 367 AQ 368 (373)
T ss_pred HH
Confidence 43
No 97
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.32 E-value=3.1e-06 Score=69.88 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=82.2
Q ss_pred ceEEEEecccccCC---HHHHHHHHHHHHhCCC-CEEEEEecCCCCCCCCCchhhhHHHHHHh-CCCeE--EeeccCh-h
Q 041902 280 SVIYVAFGTICVLE---KRQVEEIARGLLDSGH-PFLWVIREHENKDKDKGEDDVVMKYKEEL-NEKGM--IVPWCSQ-V 351 (470)
Q Consensus 280 ~vV~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nv~--v~~~vp~-~ 351 (470)
..+|||-||....+ .-..+.....|...|. +.|+..+.+ .. ..++...+.. .+... ..+|-|- .
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg-~~-------~~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRG-QP-------FFGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCC-cc-------CCCCHHHhhcccCCeEEEEEecCccHH
Confidence 37999999977321 1113456677778774 567777766 21 2222221111 12222 2377776 6
Q ss_pred hhccccccccceeccCchhhhhhhhcCCcEeeccc----cchhhHHHHHHHhhhcceeEeee
Q 041902 352 EVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ----WTDQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 352 ~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~----~~DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
+.++.+++ +|+|+|.||++|.|..|+|.++++- ---|-.-|..+++ .|.=....+
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~p 134 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTP 134 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeec
Confidence 67777888 9999999999999999999999994 3469999999998 888777765
No 98
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.28 E-value=0.0086 Score=64.48 Aligned_cols=86 Identities=16% Similarity=0.228 Sum_probs=56.6
Q ss_pred CCCeEEeecc-Ch---hhhccc----cccccceec---cCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeE
Q 041902 339 NEKGMIVPWC-SQ---VEVLSH----EAVGCFVTH---CGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVR 406 (470)
Q Consensus 339 ~~nv~v~~~v-p~---~~vl~~----~~v~~~ItH---GG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~ 406 (470)
.++|...++. +. ..++.+ +++ ||.- =|. -++.||+++|+|+|+.-.. ..+..+.+ -.-|..
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~d-g~tGfL 690 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQD-GVSGFH 690 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcC-CCcEEE
Confidence 4677776654 32 234432 235 6643 333 4899999999999986543 45666776 566888
Q ss_pred eeecCCCCcCHHHHHHHHHHHh----cCCHHHHHH
Q 041902 407 VKANEEGILESDEIKRCLELVM----GEGDEFRGN 437 (470)
Q Consensus 407 l~~~~~~~~~~~~l~~~i~~vl----~~~~~~r~~ 437 (470)
+++ -+.+++.++|.+++ . |++.+++
T Consensus 691 Vdp-----~D~eaLA~aL~~ll~kll~-dp~~~~~ 719 (784)
T TIGR02470 691 IDP-----YHGEEAAEKIVDFFEKCDE-DPSYWQK 719 (784)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 875 57888999988775 5 6655444
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.21 E-value=0.0023 Score=64.98 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=55.5
Q ss_pred hCCCeEEeeccChh---hhccccccccceec---cCc-hhhhhhhhcCCcEeeccccchhhHHHHHHH---hhhcceeEe
Q 041902 338 LNEKGMIVPWCSQV---EVLSHEAVGCFVTH---CGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIV---DFCKTGVRV 407 (470)
Q Consensus 338 ~~~nv~v~~~vp~~---~vl~~~~v~~~ItH---GG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~---~~~GvG~~l 407 (470)
+.++|...+++|+. .+|..+++ +|+- -|. -++.||+++|+|.|+.-..+.- ...+. + -..|...
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~-g~~G~l~ 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDG-GPTGFLA 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCC-CCceEEe
Confidence 45788888998864 47888888 6642 223 3789999999999986543211 11222 3 3456553
Q ss_pred eecCCCCcCHHHHHHHHHHHhcCCH
Q 041902 408 KANEEGILESDEIKRCLELVMGEGD 432 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl~~~~ 432 (470)
. +.+++.+++.++++ ++
T Consensus 377 -----~--d~~~la~ai~~ll~-~~ 393 (419)
T cd03806 377 -----S--TAEEYAEAIEKILS-LS 393 (419)
T ss_pred -----C--CHHHHHHHHHHHHh-CC
Confidence 2 78999999999998 55
No 100
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.19 E-value=0.0025 Score=63.64 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=70.2
Q ss_pred hCCCeEEeecc--Ch---hhhccccccccceecc---C-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEee
Q 041902 338 LNEKGMIVPWC--SQ---VEVLSHEAVGCFVTHC---G-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 408 (470)
Q Consensus 338 ~~~nv~v~~~v--p~---~~vl~~~~v~~~ItHG---G-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~ 408 (470)
..+++.+..+. +. ..+++.+++ ++... | ..++.||+++|+|+|+....+ ....+.+ -..|...+
T Consensus 250 ~~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~-~~~g~~~~ 322 (372)
T cd03792 250 GDPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIED-GETGFLVD 322 (372)
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhccc-CCceEEeC
Confidence 34677777765 33 357788888 77543 3 348999999999999876432 3344554 45666543
Q ss_pred ecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 409 ANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
+.+.+..++.+++. +++.+++..+-+.. .+...-+-...+.++++-+.
T Consensus 323 -------~~~~~a~~i~~ll~-~~~~~~~~~~~a~~---~~~~~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 323 -------TVEEAAVRILYLLR-DPELRRKMGANARE---HVRENFLITRHLKDYLYLIS 370 (372)
T ss_pred -------CcHHHHHHHHHHHc-CHHHHHHHHHHHHH---HHHHHcCHHHHHHHHHHHHH
Confidence 35677889999999 87655443333322 22223566666666666543
No 101
>PLN00142 sucrose synthase
Probab=98.15 E-value=0.0049 Score=66.41 Aligned_cols=88 Identities=19% Similarity=0.273 Sum_probs=55.7
Q ss_pred CCCeEEee----ccChhhhcc----ccccccceec---cCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeE
Q 041902 339 NEKGMIVP----WCSQVEVLS----HEAVGCFVTH---CGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVR 406 (470)
Q Consensus 339 ~~nv~v~~----~vp~~~vl~----~~~v~~~ItH---GG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~ 406 (470)
.++|...+ ..+..++.. .+++ ||.- -|.| ++.||+++|+|+|+.... .....+.+ -.-|..
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~d-G~tG~L 713 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVD-GVSGFH 713 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcC-CCcEEE
Confidence 35666543 333344443 2345 6653 4555 899999999999886543 45556665 456888
Q ss_pred eeecCCCCcCHHHHHHHHHH----HhcCCHHHHHHHH
Q 041902 407 VKANEEGILESDEIKRCLEL----VMGEGDEFRGNSL 439 (470)
Q Consensus 407 l~~~~~~~~~~~~l~~~i~~----vl~~~~~~r~~a~ 439 (470)
+++ -+.+++.++|.+ ++. |+..+++..
T Consensus 714 V~P-----~D~eaLA~aI~~lLekLl~-Dp~lr~~mg 744 (815)
T PLN00142 714 IDP-----YHGDEAANKIADFFEKCKE-DPSYWNKIS 744 (815)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 875 467777777765 456 775554433
No 102
>PLN02949 transferase, transferring glycosyl groups
Probab=98.12 E-value=0.0048 Score=63.34 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=52.3
Q ss_pred hCCCeEEeeccChhh---hcccccccccee---ccCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhh-c-ceeEee
Q 041902 338 LNEKGMIVPWCSQVE---VLSHEAVGCFVT---HCGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFC-K-TGVRVK 408 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~---vl~~~~v~~~It---HGG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~-G-vG~~l~ 408 (470)
+.++|...+++|+.+ +|..+++ +|+ +-|.| ++.||+++|+|.|+....+-- ...+.+.. | .|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC-
Confidence 457888889997654 6778887 663 34445 799999999999998644310 00111100 1 12221
Q ss_pred ecCCCCcCHHHHHHHHHHHhc
Q 041902 409 ANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~vl~ 429 (470)
-+.+++.+++.++++
T Consensus 407 ------~~~~~la~ai~~ll~ 421 (463)
T PLN02949 407 ------TTVEEYADAILEVLR 421 (463)
T ss_pred ------CCHHHHHHHHHHHHh
Confidence 178999999999998
No 103
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.10 E-value=0.013 Score=57.65 Aligned_cols=324 Identities=15% Similarity=0.118 Sum_probs=180.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEe-CccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRI--GTRVTFAT-TIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~-~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
-.+.+=.-+-|-++-.++|.++|+++ ++.|++-+ ++.-.+.+.+..+ ..+...-+|-.+
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~--~~v~h~YlP~D~---------------- 111 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG--DSVIHQYLPLDL---------------- 111 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC--CCeEEEecCcCc----------------
Confidence 35666667889999999999999999 88888887 4444444423322 223444444221
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhH--HHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccC
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWT--AEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVN 166 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~--~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 166 (470)
...++.+++. ++||++|.--...|- ..-++..|+|.+.+..=-+
T Consensus 112 ------~~~v~rFl~~------~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS---------------------- 157 (419)
T COG1519 112 ------PIAVRRFLRK------WRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS---------------------- 157 (419)
T ss_pred ------hHHHHHHHHh------cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec----------------------
Confidence 1222344444 569988765455554 5557789999998632100
Q ss_pred CcccCCCCCCCCCCCCCCccCCCCCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccC
Q 041902 167 DLIELPGLPPLTGWDLPSFMDPRKSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVA 246 (470)
Q Consensus 167 ~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~ 246 (470)
... ..+|..........+ ..- ++++..+-..-+. ...+-..++..+|.+=.
T Consensus 158 ----~rS------------------~~~y~k~~~~~~~~~---~~i--~li~aQse~D~~R--f~~LGa~~v~v~GNlKf 208 (419)
T COG1519 158 ----DRS------------------FARYAKLKFLARLLF---KNI--DLILAQSEEDAQR--FRSLGAKPVVVTGNLKF 208 (419)
T ss_pred ----hhh------------------hHHHHHHHHHHHHHH---Hhc--ceeeecCHHHHHH--HHhcCCcceEEecceee
Confidence 000 122222222223333 333 6677765544442 12221234777886654
Q ss_pred CCccCCcccCCCCCCCCCChhHHHHhhccCCC-CceEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEecCCCCCCC
Q 041902 247 SALWDGKELYGGDLCKNSSKEYYMEWLSSKPK-SSVIYVAFGTICVLEKRQVEEIARGLLDSG-HPFLWVIREHENKDKD 324 (470)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~vV~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~ 324 (470)
.-..+. . +......|-..-+. ++ +.|..+| ...+.+.......++.... .-.++.++.+.++.
T Consensus 209 d~~~~~----------~-~~~~~~~~r~~l~~~r~-v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf-- 273 (419)
T COG1519 209 DIEPPP----------Q-LAAELAALRRQLGGHRP-VWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPERF-- 273 (419)
T ss_pred cCCCCh----------h-hHHHHHHHHHhcCCCCc-eEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChhhH--
Confidence 411100 0 11223333322222 33 5555555 4334444555555555533 22233344441222
Q ss_pred CCchhhhHHHHHH---------------hCCCeEEeecc-Chhhhcccccc----ccceeccCchhhhhhhhcCCcEeec
Q 041902 325 KGEDDVVMKYKEE---------------LNEKGMIVPWC-SQVEVLSHEAV----GCFVTHCGWNSSLESLVCGVPVVAF 384 (470)
Q Consensus 325 ~~~~~~~~~~~~~---------------~~~nv~v~~~v-p~~~vl~~~~v----~~~ItHGG~gt~~eal~~GvP~v~~ 384 (470)
..-.++.++ ...++.+.+-+ ....++.-+++ +-++-+||+| ..|++++|+|++.-
T Consensus 274 ----~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~G 348 (419)
T COG1519 274 ----KAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFG 348 (419)
T ss_pred ----HHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeC
Confidence 111112111 01245555444 33444444544 1135689988 57999999999999
Q ss_pred cccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 041902 385 PQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLA 445 (470)
Q Consensus 385 P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~ 445 (470)
|...-|.+-++++.+ .|.|+.++ +.+.|.+++..++. |+..+.+-.+=+.++
T Consensus 349 p~~~Nf~ei~~~l~~-~ga~~~v~-------~~~~l~~~v~~l~~-~~~~r~~~~~~~~~~ 400 (419)
T COG1519 349 PYTFNFSDIAERLLQ-AGAGLQVE-------DADLLAKAVELLLA-DEDKREAYGRAGLEF 400 (419)
T ss_pred CccccHHHHHHHHHh-cCCeEEEC-------CHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 999999999999998 99999997 38889999999998 775555544433333
No 104
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.06 E-value=0.00051 Score=67.87 Aligned_cols=135 Identities=11% Similarity=0.192 Sum_probs=89.7
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChh---hhccccc
Q 041902 282 IYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQV---EVLSHEA 358 (470)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~---~vl~~~~ 358 (470)
.++..|++.. ......+++++...+.++++ ++.+ ...+.+.+...+||.+.+++|+. .+++.++
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~i-vG~g----------~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad 263 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVV-IGDG----------PELDRLRAKAGPNVTFLGRVSDEELRDLYARAR 263 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEE-EECC----------hhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCC
Confidence 3445677663 23466777888877766544 4444 22234444567999999999974 4788888
Q ss_pred cccceeccCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH-HHHH
Q 041902 359 VGCFVTHCGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD-EFRG 436 (470)
Q Consensus 359 v~~~ItHGG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~-~~r~ 436 (470)
+-++-+.-|.| ++.||+++|+|+|+....+ ....+.+ -+.|..++. -+.+++.++|.++++ ++ ..++
T Consensus 264 ~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~-----~~~~~la~~i~~l~~-~~~~~~~ 332 (351)
T cd03804 264 AFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEE-----QTVESLAAAVERFEK-NEDFDPQ 332 (351)
T ss_pred EEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCC-----CCHHHHHHHHHHHHh-CcccCHH
Confidence 83322334444 5679999999999986543 3444565 567888864 478899999999999 77 4444
Q ss_pred HHHH
Q 041902 437 NSLK 440 (470)
Q Consensus 437 ~a~~ 440 (470)
++++
T Consensus 333 ~~~~ 336 (351)
T cd03804 333 AIRA 336 (351)
T ss_pred HHHH
Confidence 4433
No 105
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.01 E-value=0.0038 Score=64.40 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=54.4
Q ss_pred HhCCCeEEe-eccCh--hhhccccccccceec---cCch-hhhhhhhcCCcEeeccccc--hhhHHHHHHHhhhcceeEe
Q 041902 337 ELNEKGMIV-PWCSQ--VEVLSHEAVGCFVTH---CGWN-SSLESLVCGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRV 407 (470)
Q Consensus 337 ~~~~nv~v~-~~vp~--~~vl~~~~v~~~ItH---GG~g-t~~eal~~GvP~v~~P~~~--DQ~~nA~rl~~~~GvG~~l 407 (470)
..+.++.+. .+-.. ..+++.+|+ +|.- -|.| +.+||+++|+|.|+....+ |.-.+...-.+ .+-|..+
T Consensus 334 ~~~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~-~~~G~lv 410 (466)
T PRK00654 334 RYPGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDG-EATGFVF 410 (466)
T ss_pred HCCCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCC-CCceEEe
Confidence 455665543 55322 257888888 7753 4555 7889999999999875432 21111100022 3778888
Q ss_pred eecCCCCcCHHHHHHHHHHHhc
Q 041902 408 KANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
+. -+.+++.+++.+++.
T Consensus 411 ~~-----~d~~~la~~i~~~l~ 427 (466)
T PRK00654 411 DD-----FNAEDLLRALRRALE 427 (466)
T ss_pred CC-----CCHHHHHHHHHHHHH
Confidence 64 578999999999876
No 106
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.88 E-value=0.037 Score=57.28 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=64.5
Q ss_pred hCCCeEEeeccChhhhccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhh-----c-ceeEe
Q 041902 338 LNEKGMIVPWCSQVEVLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFC-----K-TGVRV 407 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~-----G-vG~~l 407 (470)
+.+|+.+.+......+++.+++ +|.- |--.++.||+++|+|+|+.. .......+.+ . | .|..+
T Consensus 352 l~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~-~~~~~~g~~G~lv 424 (475)
T cd03813 352 LEDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEG-ADDEALGPAGEVV 424 (475)
T ss_pred CCCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcC-CcccccCCceEEE
Confidence 3578888886666788888888 6644 33458999999999999854 3334444443 2 2 67777
Q ss_pred eecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHH
Q 041902 408 KANEEGILESDEIKRCLELVMGEGDEFRGNSLK 440 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~ 440 (470)
+. -+.+++.+++.++++ |++.+++..+
T Consensus 425 ~~-----~d~~~la~ai~~ll~-~~~~~~~~~~ 451 (475)
T cd03813 425 PP-----ADPEALARAILRLLK-DPELRRAMGE 451 (475)
T ss_pred CC-----CCHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 63 679999999999999 8865544433
No 107
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.83 E-value=0.043 Score=54.79 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=65.5
Q ss_pred CCCeEEeeccChhh---hccccccccce------eccCch-hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEee
Q 041902 339 NEKGMIVPWCSQVE---VLSHEAVGCFV------THCGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 408 (470)
Q Consensus 339 ~~nv~v~~~vp~~~---vl~~~~v~~~I------tHGG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~ 408 (470)
.+|+...+++|+.+ .+.++++.++- +.++.+ .+.|++++|+|+|+.++ ...++. .+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-ED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cC-cEEEe
Confidence 38999999998655 68888883332 223333 58999999999998763 222332 34 34443
Q ss_pred ecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 409 ANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
. -+.+++.++|.+++.++...+.+ +.+. +.+ ..|-++..+++++.|.+
T Consensus 324 ~-----~d~~~~~~ai~~~l~~~~~~~~~--~~~~-~~~----~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 324 A-----DDPEEFVAAIEKALLEDGPARER--RRLR-LAA----QNSWDARAAEMLEALQE 371 (373)
T ss_pred C-----CCHHHHHHHHHHHHhcCCchHHH--HHHH-HHH----HCCHHHHHHHHHHHHHh
Confidence 2 28999999999987622221111 1111 222 25555556666666654
No 108
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00031 Score=57.19 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=80.0
Q ss_pred EEEEecccccCCHHHHHH--HHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeec--cC-hhhhccc
Q 041902 282 IYVAFGTICVLEKRQVEE--IARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPW--CS-QVEVLSH 356 (470)
Q Consensus 282 V~vs~GS~~~~~~~~~~~--~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~--vp-~~~vl~~ 356 (470)
+|||-||....-.+.... ...-.+.-..++|+..+.+ . ..| +.+ ..+.+| -+ ...+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~-d--------~kp------vag-l~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG-D--------IKP------VAG-LRVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC-C--------ccc------ccc-cEEEeechHHHHHHHhhc
Confidence 799999985322222111 2222222234778888765 2 222 112 244444 34 3556656
Q ss_pred cccccceeccCchhhhhhhhcCCcEeeccccc--------hhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHh
Q 041902 357 EAVGCFVTHCGWNSSLESLVCGVPVVAFPQWT--------DQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~--------DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl 428 (470)
+++ +|+|+|.||++.++..++|.+++|-.. -|..-|..+++ .+.=....+. +..-.+.+......++
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spt--e~~L~a~l~~s~~~v~ 140 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPT--ELVLQAGLQVSVADVL 140 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCC--chhhHHhHhhhhhhhc
Confidence 666 999999999999999999999999543 48889999998 8888888751 1223445555555555
Q ss_pred c
Q 041902 429 G 429 (470)
Q Consensus 429 ~ 429 (470)
.
T Consensus 141 ~ 141 (161)
T COG5017 141 H 141 (161)
T ss_pred C
Confidence 5
No 109
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.76 E-value=0.011 Score=61.12 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=53.4
Q ss_pred hCCCeEEeeccCh---hhhccccccccceec---cCc-hhhhhhhhcCCcEeeccccc--hhhHHHHHHHhhhcceeEee
Q 041902 338 LNEKGMIVPWCSQ---VEVLSHEAVGCFVTH---CGW-NSSLESLVCGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRVK 408 (470)
Q Consensus 338 ~~~nv~v~~~vp~---~~vl~~~~v~~~ItH---GG~-gt~~eal~~GvP~v~~P~~~--DQ~~nA~rl~~~~GvG~~l~ 408 (470)
.+.|+.+....++ ..++..+++ ++.. -|. -+.+||+++|+|.|+....+ |.-.+...-.+ -|.|..+.
T Consensus 349 ~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~ 425 (476)
T cd03791 349 YPGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFE 425 (476)
T ss_pred CCCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeC
Confidence 3577776533333 246778888 6643 233 36789999999999876543 21111111112 35788886
Q ss_pred ecCCCCcCHHHHHHHHHHHhc
Q 041902 409 ANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~vl~ 429 (470)
. .+.+++.+++.+++.
T Consensus 426 ~-----~~~~~l~~~i~~~l~ 441 (476)
T cd03791 426 G-----YNADALLAALRRALA 441 (476)
T ss_pred C-----CCHHHHHHHHHHHHH
Confidence 4 578999999999886
No 110
>PLN02316 synthase/transferase
Probab=97.73 E-value=0.13 Score=57.20 Aligned_cols=114 Identities=8% Similarity=0.028 Sum_probs=64.8
Q ss_pred CCCeEEeeccChh---hhccccccccceecc---Cc-hhhhhhhhcCCcEeeccccc--hhhHHH----HHHHh--hhcc
Q 041902 339 NEKGMIVPWCSQV---EVLSHEAVGCFVTHC---GW-NSSLESLVCGVPVVAFPQWT--DQGTNA----KIIVD--FCKT 403 (470)
Q Consensus 339 ~~nv~v~~~vp~~---~vl~~~~v~~~ItHG---G~-gt~~eal~~GvP~v~~P~~~--DQ~~nA----~rl~~--~~Gv 403 (470)
++++.+....+.. .+++.+|+ |+... |. -+.+||+++|+|.|+....+ |..... .+-+. .-+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 4566665444442 57888888 88532 33 48899999999998876543 322111 00010 0145
Q ss_pred eeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 041902 404 GVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAF 462 (470)
Q Consensus 404 G~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (470)
|..+. ..+++.|..+|.++|. +. ......+++..++.+...-|-...+.++
T Consensus 977 Gflf~-----~~d~~aLa~AL~raL~-~~--~~~~~~~~~~~r~~m~~dFSW~~~A~~Y 1027 (1036)
T PLN02316 977 GFSFD-----GADAAGVDYALNRAIS-AW--YDGRDWFNSLCKRVMEQDWSWNRPALDY 1027 (1036)
T ss_pred eEEeC-----CCCHHHHHHHHHHHHh-hh--hhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 77775 4689999999999998 42 2333333444443333333433444443
No 111
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.053 Score=52.86 Aligned_cols=202 Identities=13% Similarity=0.110 Sum_probs=110.3
Q ss_pred CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHH---HHHh--CCC
Q 041902 235 KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIAR---GLLD--SGH 309 (470)
Q Consensus 235 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~---al~~--~~~ 309 (470)
+.+..|||..+.+.- | ..+ +++...+-+....+++++.+-.||-.+.=...+..+.+ .+.. .+.
T Consensus 155 g~~~~yVGHpl~d~i-~---------~~~-~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~ 223 (381)
T COG0763 155 GLPCTYVGHPLADEI-P---------LLP-DREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDL 223 (381)
T ss_pred CCCeEEeCChhhhhc-c---------ccc-cHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 456999996665521 0 011 33555555655567789999999965322222222333 3332 345
Q ss_pred CEEEEEecCCCCCCCCCchhhhHHHHHHhCCCe-EEeecc-C-h-hhhccccccccceeccCchhhhhhhhcCCcEeecc
Q 041902 310 PFLWVIREHENKDKDKGEDDVVMKYKEELNEKG-MIVPWC-S-Q-VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFP 385 (470)
Q Consensus 310 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv-~v~~~v-p-~-~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P 385 (470)
+|++-+... ... ..... ....+. ...-++ + + ..++..||+ .+.-+|.. +.|+..+|+|||+.=
T Consensus 224 ~~vlp~~~~-~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Y 290 (381)
T COG0763 224 KFVLPLVNA-KYR------RIIEE---ALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAY 290 (381)
T ss_pred eEEEecCcH-HHH------HHHHH---HhhccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEE
Confidence 666654433 101 11111 111221 111222 2 1 346777888 77777754 579999999998762
Q ss_pred c-cchhhHHHHHHHhhhc--------ceeEeeecC-CCCcCHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHhc
Q 041902 386 Q-WTDQGTNAKIIVDFCK--------TGVRVKANE-EGILESDEIKRCLELVMGEGD----EFRGNSLKWKDLAREAAKQ 451 (470)
Q Consensus 386 ~-~~DQ~~nA~rl~~~~G--------vG~~l~~~~-~~~~~~~~l~~~i~~vl~~~~----~~r~~a~~~~~~~~~~~~~ 451 (470)
- ..=-...|+++.+ .. +|..+-++= -+..+++.|.+++..++. |. .+++...+++..++ .
T Consensus 291 k~~~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~-~~~~~~~~~~~~~~l~~~l~----~ 364 (381)
T COG0763 291 KVKPITYFIAKRLVK-LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLL-NGDRREALKEKFRELHQYLR----E 364 (381)
T ss_pred eccHHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhc-ChHhHHHHHHHHHHHHHHHc----C
Confidence 1 1122334445443 33 222222210 156789999999999999 77 45555555555554 4
Q ss_pred CCCcHHHHHHHHHHh
Q 041902 452 GGSSYKNLKAFVDDF 466 (470)
Q Consensus 452 ~~~~~~~~~~~~~~l 466 (470)
+.+++.+...+++.+
T Consensus 365 ~~~~e~aA~~vl~~~ 379 (381)
T COG0763 365 DPASEIAAQAVLELL 379 (381)
T ss_pred CcHHHHHHHHHHHHh
Confidence 457777777777654
No 112
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.67 E-value=0.095 Score=54.17 Aligned_cols=82 Identities=10% Similarity=0.062 Sum_probs=55.4
Q ss_pred HhCCCeEEeeccChh---hhccccccccceec---cCch-hhhhhhhcCCcEeeccccchhhHHHHHHHh-----hhcce
Q 041902 337 ELNEKGMIVPWCSQV---EVLSHEAVGCFVTH---CGWN-SSLESLVCGVPVVAFPQWTDQGTNAKIIVD-----FCKTG 404 (470)
Q Consensus 337 ~~~~nv~v~~~vp~~---~vl~~~~v~~~ItH---GG~g-t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~-----~~GvG 404 (470)
..+.++.+....+.. .+++.+++ +|.- -|.| +.+||+++|+|.|+....+ ....+.+ .-+.|
T Consensus 343 ~~~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G 416 (473)
T TIGR02095 343 RYPGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTG 416 (473)
T ss_pred HCCCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCce
Confidence 455667666544543 47888888 7753 3555 7789999999999876542 2222332 02778
Q ss_pred eEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 405 VRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 405 ~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..+.. .+.+++.++|.+++.
T Consensus 417 ~l~~~-----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 417 FLFEE-----YDPGALLAALSRALR 436 (473)
T ss_pred EEeCC-----CCHHHHHHHHHHHHH
Confidence 88864 578999999999876
No 113
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.66 E-value=0.0039 Score=62.52 Aligned_cols=116 Identities=13% Similarity=0.163 Sum_probs=77.8
Q ss_pred HhCCCeEEeeccChh---hhccccccccceec----cCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEee
Q 041902 337 ELNEKGMIVPWCSQV---EVLSHEAVGCFVTH----CGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVK 408 (470)
Q Consensus 337 ~~~~nv~v~~~vp~~---~vl~~~~v~~~ItH----GG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~ 408 (470)
..+.++.+.+++|+. .+++.+++ +|.. .|. .++.||+++|+|+|+.... .+...+.+ -..|..+.
T Consensus 254 ~l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~-~~~G~~l~ 326 (380)
T PRK15484 254 RIGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLE-GITGYHLA 326 (380)
T ss_pred hcCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhccc-CCceEEEe
Confidence 345778888999864 46888998 6653 343 4678999999999997653 34455665 45687554
Q ss_pred ecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 409 ANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 409 ~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
...+.+++.++|.++++ |++.+ ++++..++.....-+-.....++.+-+.+
T Consensus 327 ----~~~d~~~la~~I~~ll~-d~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 327 ----EPMTSDSIISDINRTLA-DPELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ----CCCCHHHHHHHHHHHHc-CHHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 24589999999999999 88643 33333333333345666666666665543
No 114
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.64 E-value=0.015 Score=57.94 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=61.5
Q ss_pred hCCCeEEeeccCh-hhhccccccccceec--cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCC
Q 041902 338 LNEKGMIVPWCSQ-VEVLSHEAVGCFVTH--CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 414 (470)
Q Consensus 338 ~~~nv~v~~~vp~-~~vl~~~~v~~~ItH--GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~ 414 (470)
++.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+.+ -..|..++.
T Consensus 259 ~~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~----- 329 (372)
T cd04949 259 LEDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPK----- 329 (372)
T ss_pred CcceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCC-----
Confidence 4467777777655 568888998444444 33458999999999999875431 13344555 567787763
Q ss_pred cCHHHHHHHHHHHhcCCHH
Q 041902 415 LESDEIKRCLELVMGEGDE 433 (470)
Q Consensus 415 ~~~~~l~~~i~~vl~~~~~ 433 (470)
-+.+++.++|.+++. +++
T Consensus 330 ~d~~~la~~i~~ll~-~~~ 347 (372)
T cd04949 330 GDIEALAEAIIELLN-DPK 347 (372)
T ss_pred CcHHHHHHHHHHHHc-CHH
Confidence 579999999999999 874
No 115
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.62 E-value=0.002 Score=56.50 Aligned_cols=91 Identities=27% Similarity=0.372 Sum_probs=69.4
Q ss_pred hCCCeEEeeccC---hhhhccccccccceec----cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec
Q 041902 338 LNEKGMIVPWCS---QVEVLSHEAVGCFVTH----CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 338 ~~~nv~v~~~vp---~~~vl~~~~v~~~ItH----GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~ 410 (470)
...++.+.++++ ...++..+++ +|+. |...++.||+++|+|+|+. |...+...+.+ .+.|..+..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeCC-
Confidence 457888899987 3668888888 8877 6677999999999999974 46667777776 667999974
Q ss_pred CCCCcCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041902 411 EEGILESDEIKRCLELVMGEGDEFRGNSLKW 441 (470)
Q Consensus 411 ~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~ 441 (470)
.+.+++.++|.+++. ++..+++..+-
T Consensus 143 ----~~~~~l~~~i~~~l~-~~~~~~~l~~~ 168 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLN-DPELRQKLGKN 168 (172)
T ss_dssp ----TSHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHC-CHHHHHHHHHH
Confidence 399999999999999 87555444443
No 116
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.59 E-value=0.0032 Score=63.70 Aligned_cols=111 Identities=21% Similarity=0.238 Sum_probs=74.5
Q ss_pred CCeEEeeccChhh---hccccccccceeccC----chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCC
Q 041902 340 EKGMIVPWCSQVE---VLSHEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 412 (470)
Q Consensus 340 ~nv~v~~~vp~~~---vl~~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~ 412 (470)
.++...+|+++.+ ++..+++.++|...- -.+++||+++|+|+|+... ......+.+ .+.|..+..
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~-~~~G~l~~~--- 360 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDN-GGNGLLLSK--- 360 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcC-CCcEEEeCC---
Confidence 5677789999764 444433333765442 4579999999999998653 345666765 448888763
Q ss_pred CCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFV 463 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (470)
..+.+++.++|.++++ |++.++ ++++..++.+...-+.+....+|+
T Consensus 361 -~~~~~~la~~I~~ll~-~~~~~~---~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 361 -DPTPNELVSSLSKFID-NEEEYQ---TMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -CCCHHHHHHHHHHHHh-CHHHHH---HHHHHHHHHHHHHcCHHHhHHHhc
Confidence 4588999999999999 875443 344444444445566666655554
No 117
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.56 E-value=0.049 Score=56.54 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=64.1
Q ss_pred CCCeEEeeccChhhhcccccccccee---ccCc-hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCC
Q 041902 339 NEKGMIVPWCSQVEVLSHEAVGCFVT---HCGW-NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 414 (470)
Q Consensus 339 ~~nv~v~~~vp~~~vl~~~~v~~~It---HGG~-gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~ 414 (470)
.++|...++.+...++..+++ +|. .-|. .+++||+++|+|+|+....+ .+...+++ -.-|..+..+. ..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~-g~nG~lv~~~~-~~ 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIED-NKNGYLIPIDE-EE 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccC-CCCEEEEeCCc-cc
Confidence 466777788888899999998 775 3344 48999999999999975431 23445554 34677776310 01
Q ss_pred cC----HHHHHHHHHHHhcCCH---HHHHHHHHHH
Q 041902 415 LE----SDEIKRCLELVMGEGD---EFRGNSLKWK 442 (470)
Q Consensus 415 ~~----~~~l~~~i~~vl~~~~---~~r~~a~~~~ 442 (470)
-+ .++|.++|.+++. ++ .+.+++++.+
T Consensus 448 ~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a 481 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIA 481 (500)
T ss_pred cchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHH
Confidence 22 7889999999997 55 3444444433
No 118
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.46 E-value=0.0026 Score=64.27 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=84.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHH-h-CCCeEEeeccChhh---
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEE-L-NEKGMIVPWCSQVE--- 352 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~nv~v~~~vp~~~--- 352 (470)
+..++|.+|.+....+++.+..-.+.|+..+.-.+|..... ... ...+...+.+. + ++++.+.+..|..+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~-~~~----~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFP-ASG----EARLRRRFAAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETS-TTH----HHHHHHHHHHTTS-GGGEEEEE---HHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCC-HHH----HHHHHHHHHHcCCChhhEEEcCCCCHHHHHH
Confidence 44599999999999899999988899988887778877654 211 01222222211 2 36677667766543
Q ss_pred hcccccccc-ceeccCchhhhhhhhcCCcEeeccccc-hhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcC
Q 041902 353 VLSHEAVGC-FVTHCGWNSSLESLVCGVPVVAFPQWT-DQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGE 430 (470)
Q Consensus 353 vl~~~~v~~-~ItHGG~gt~~eal~~GvP~v~~P~~~-DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~ 430 (470)
.+..+|+.+ -...+|..|++|||+.|||+|.+|-.. =...-|..+.. +|+...+.. +.++-.+.-.++-.
T Consensus 358 ~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~------s~~eYv~~Av~La~- 429 (468)
T PF13844_consen 358 RYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD------SEEEYVEIAVRLAT- 429 (468)
T ss_dssp HGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S------SHHHHHHHHHHHHH-
T ss_pred HhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC------CHHHHHHHHHHHhC-
Confidence 445566621 125688899999999999999999543 33444556665 888877753 67777777777777
Q ss_pred CHHHHHHH
Q 041902 431 GDEFRGNS 438 (470)
Q Consensus 431 ~~~~r~~a 438 (470)
|++++++.
T Consensus 430 D~~~l~~l 437 (468)
T PF13844_consen 430 DPERLRAL 437 (468)
T ss_dssp -HHHHHHH
T ss_pred CHHHHHHH
Confidence 77655443
No 119
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.43 E-value=0.17 Score=51.11 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCCE-EEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeecc-Ch---hhhccccccccceec----cC
Q 041902 297 VEEIARGLLDSGHPF-LWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWC-SQ---VEVLSHEAVGCFVTH----CG 367 (470)
Q Consensus 297 ~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~v-p~---~~vl~~~~v~~~ItH----GG 367 (470)
+..+++++...+.++ +++++.+ +.. .+.++...++. ++ ..+++.+|+ ||.- |-
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g-~~~---------------~~~~v~~~g~~~~~~~l~~~y~~aDv--fV~pS~~Egf 319 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKF-SPF---------------TAGNVVNHGFETDKRKLMSALNQMDA--LVFSSRVDNY 319 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCC-Ccc---------------cccceEEecCcCCHHHHHHHHHhCCE--EEECCccccC
Confidence 566778887765443 3445443 111 12455545554 22 445666777 7763 33
Q ss_pred chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHH
Q 041902 368 WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCL 424 (470)
Q Consensus 368 ~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i 424 (470)
-.+++||+++|+|+|+....+ ....+. -+-|..+++ -+.++|.+.+
T Consensus 320 p~vilEAmA~G~PVVat~~gG----~~Eiv~--~~~G~lv~~-----~d~~~La~~~ 365 (405)
T PRK10125 320 PLILCEALSIGVPVIATHSDA----AREVLQ--KSGGKTVSE-----EEVLQLAQLS 365 (405)
T ss_pred cCHHHHHHHcCCCEEEeCCCC----hHHhEe--CCcEEEECC-----CCHHHHHhcc
Confidence 347899999999999998765 222333 356888875 4677777643
No 120
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.09 E-value=0.4 Score=48.61 Aligned_cols=180 Identities=11% Similarity=0.197 Sum_probs=108.6
Q ss_pred HHHhhccCCCCceEEEEecccccC------C----HHHHHHHHHHHHhCCCCEEEEEecCCCC---CCCCCchhh-hHHH
Q 041902 269 YMEWLSSKPKSSVIYVAFGTICVL------E----KRQVEEIARGLLDSGHPFLWVIREHENK---DKDKGEDDV-VMKY 334 (470)
Q Consensus 269 ~~~~l~~~~~~~vV~vs~GS~~~~------~----~~~~~~~~~al~~~~~~~i~~~~~~~~~---~~~~~~~~~-~~~~ 334 (470)
+..|+...+.+++|-||.-..... . ...+..+++.+...|++++++.... +. ..++ .. -..+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~-~~~~~~~dD---~~~~~~l 299 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCT-GIDSYNKDD---RMVALNL 299 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEeccc-CccCCCCch---HHHHHHH
Confidence 344554434556787776543311 1 1234455666666788877665421 10 0000 11 1233
Q ss_pred HHHhC--CCeEEe--eccCh--hhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeE-e
Q 041902 335 KEELN--EKGMIV--PWCSQ--VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVR-V 407 (470)
Q Consensus 335 ~~~~~--~nv~v~--~~vp~--~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~-l 407 (470)
.+.++ .++.++ .+-|. ..++.+|++ +|..==++ +.-|+..|||.+.++. | +-...-+.+ +|.... +
T Consensus 300 ~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlHa-~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~ 372 (426)
T PRK10017 300 RQHVSDPARYHVVMDELNDLEMGKILGACEL--TVGTRLHS-AIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAI 372 (426)
T ss_pred HHhcccccceeEecCCCChHHHHHHHhhCCE--EEEecchH-HHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEe
Confidence 34444 334443 33343 378888888 88654333 4557889999999986 4 333444476 888866 5
Q ss_pred eecCCCCcCHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcC
Q 041902 408 KANEEGILESDEIKRCLELVMGEGD-EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGTS 469 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl~~~~-~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 469 (470)
+. ..++.++|.+.+++++. +. +++++.++-.+++++ ...+...++++.+.+.
T Consensus 373 ~~---~~l~~~~Li~~v~~~~~-~r~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~~~ 425 (426)
T PRK10017 373 DI---RHLLDGSLQAMVADTLG-QLPALNARLAEAVSRERQ------TGMQMVQSVLERIGEV 425 (426)
T ss_pred ch---hhCCHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhccC
Confidence 54 78899999999999999 55 677777666666654 3446677888877654
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=96.99 E-value=0.43 Score=50.67 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=52.2
Q ss_pred CeEEeeccChh-hhccccccccceecc---C-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCc
Q 041902 341 KGMIVPWCSQV-EVLSHEAVGCFVTHC---G-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGIL 415 (470)
Q Consensus 341 nv~v~~~vp~~-~vl~~~~v~~~ItHG---G-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~ 415 (470)
++...++.++. .+++.+++ ||.-+ | ..+++||+++|+|+|+....+.. . +.+ |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-Eee--cCCeEec------C
Confidence 34445666654 48888888 87632 3 34789999999999998765422 1 222 3222222 3
Q ss_pred CHHHHHHHHHHHhcCCHH
Q 041902 416 ESDEIKRCLELVMGEGDE 433 (470)
Q Consensus 416 ~~~~l~~~i~~vl~~~~~ 433 (470)
+.+++.+++.++|. ++.
T Consensus 667 D~EafAeAI~~LLs-d~~ 683 (794)
T PLN02501 667 TSEDFVAKVKEALA-NEP 683 (794)
T ss_pred CHHHHHHHHHHHHh-Cch
Confidence 68999999999999 664
No 122
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.93 E-value=0.056 Score=52.67 Aligned_cols=105 Identities=11% Similarity=0.059 Sum_probs=66.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCce-EEEcCCCCCCCCCCCCCCchhhHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLS-FASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~-~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||++-....|++.=..++.+.|+++ +.+|++++.+.+.+.+ +.. +.++ +++++.. ... ..++.
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~-~~~---p~vd~v~~~~~~-~~~--------~~~~~ 67 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIV-RLH---PAVDEVIPVALR-RWR--------KTLFS 67 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhh-hcC---CCccEEEEechh-hhh--------hcccc
Confidence 68999999999999999999999998 9999999999998888 542 4454 4455421 000 00000
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCC
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLP 135 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP 135 (470)
......+..+.+.++. .++|++|.-........++...+.+
T Consensus 68 ---~~~~~~~~~~~~~lr~---~~yD~vi~~~~~~~s~~l~~~~~~~ 108 (319)
T TIGR02193 68 ---AATWREIKALRALLRA---ERYDAVIDAQGLIKSALVARMARGP 108 (319)
T ss_pred ---chhHHHHHHHHHHHhh---ccchhhhhhhhhHHHHHHHHhhCCc
Confidence 0011223333344443 4699998654444455666666633
No 123
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.65 E-value=0.022 Score=47.89 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=65.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFK 91 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (470)
|||+++....+| ...+++.|.++||+|++++.....+..... .|+.++.++..... . ...+.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~----~~i~~~~~~~~~k~-------~-~~~~~--- 62 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII----EGIKVIRLPSPRKS-------P-LNYIK--- 62 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh----CCeEEEEecCCCCc-------c-HHHHH---
Confidence 577888777666 457799999999999999996654333133 78999988533100 1 22221
Q ss_pred HHhHHHHHHHHHhhhhcCCCCccEEEeCCCch---hHHHHHHHcC-CCeEEE
Q 041902 92 RRSSEALTEIITGSENQGAQPFTCLVYSLLLP---WTAEVARAYH-LPSALL 139 (470)
Q Consensus 92 ~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~---~~~~~A~~~g-iP~i~~ 139 (470)
. .++.+.+++ .+||+|.+..... .+..++...+ +|.+..
T Consensus 63 --~----~~l~k~ik~---~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~ 105 (139)
T PF13477_consen 63 --Y----FRLRKIIKK---EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYT 105 (139)
T ss_pred --H----HHHHHHhcc---CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEE
Confidence 1 133333443 5699998876543 3455677888 898864
No 124
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.60 E-value=0.003 Score=49.55 Aligned_cols=52 Identities=13% Similarity=0.227 Sum_probs=43.2
Q ss_pred hHHHHhhccCCCCceEEEEecccccC---CH--HHHHHHHHHHHhCCCCEEEEEecC
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVL---EK--RQVEEIARGLLDSGHPFLWVIREH 318 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~ 318 (470)
..+..|+...+++|.|+||+||.... .. ..+..++++++..+.++++.+...
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 44556999889999999999998743 22 478999999999999999999866
No 125
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.53 E-value=0.94 Score=44.70 Aligned_cols=103 Identities=10% Similarity=-0.020 Sum_probs=72.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCceEE-EcCCCCCCCCCCCCCCchhhH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLSFA-SFSDGYDDGFNSKQNDPRRYV 87 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~-~i~~~~~~~~~~~~~~~~~~~ 87 (470)
||||++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.+ +.. +.++-+ .++.. . .. ..+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~-~~~---P~vd~vi~~~~~--~------~~-~~~- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL-SRM---PEVNEAIPMPLG--H------GA-LEI- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH-hcC---CccCEEEecccc--c------ch-hhh-
Confidence 789999999999999999999999996 8999999999988888 542 344432 22211 0 00 111
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
....++++.++. .++|++|.=....-...++...|+|.-+
T Consensus 67 --------~~~~~l~~~lr~---~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 --------GERRRLGHSLRE---KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred --------HHHHHHHHHHHh---cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112344555655 5699998765555667778888888665
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.47 E-value=0.012 Score=49.20 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=49.9
Q ss_pred CCCeEEeeccCh-hhhccccccccceec--cC-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCC
Q 041902 339 NEKGMIVPWCSQ-VEVLSHEAVGCFVTH--CG-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 414 (470)
Q Consensus 339 ~~nv~v~~~vp~-~~vl~~~~v~~~ItH--GG-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~ 414 (470)
.+|+...+|++. ..++..+++.+..+. .| .+++.|++++|+|+|+.+. .....++. .+.|..+.
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~~------ 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLVA------ 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE-T------
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEEC------
Confidence 469999999864 557888998555432 23 4899999999999999765 12233343 57777663
Q ss_pred cCHHHHHHHHHHHhc
Q 041902 415 LESDEIKRCLELVMG 429 (470)
Q Consensus 415 ~~~~~l~~~i~~vl~ 429 (470)
-+.+++.+++++++.
T Consensus 120 ~~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 120 NDPEELAEAIERLLN 134 (135)
T ss_dssp T-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 389999999999987
No 127
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.37 E-value=0.78 Score=45.39 Aligned_cols=107 Identities=7% Similarity=0.026 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCceE-EEcCCCCCCCCCCCCCCchh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLSF-ASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~ 85 (470)
..||||++-....|++.=..++.+.|+++ +.+|++++.+.+.+.+ +.. +.++- +.++.. . ..
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~-~~~---P~id~vi~~~~~--~---------~~ 68 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL-SEN---PEINALYGIKNK--K---------AG 68 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh-ccC---CCceEEEEeccc--c---------cc
Confidence 45799999999999999999999999997 8999999999998888 542 34432 333321 0 00
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
..... ....++++.+++ .++|++|.-........++...|.|..+
T Consensus 69 ~~~~~-----~~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 69 ASEKI-----KNFFSLIKVLRA---NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHHH-----HHHHHHHHHHhh---CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00000 122344555655 5699999764444456677777888765
No 128
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.31 E-value=1.7 Score=45.26 Aligned_cols=65 Identities=25% Similarity=0.347 Sum_probs=47.7
Q ss_pred hCCCeEEeeccCh-hhhccccccccceec---cC-chhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeee
Q 041902 338 LNEKGMIVPWCSQ-VEVLSHEAVGCFVTH---CG-WNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 338 ~~~nv~v~~~vp~-~~vl~~~~v~~~ItH---GG-~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
+.+++.+.++... ..+|+.+++ ||.. -| -+++.||+++|+|+|+... ..+...+.+ -..|..++.
T Consensus 453 L~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~ 522 (578)
T PRK15490 453 ILERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDD 522 (578)
T ss_pred CCCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECC
Confidence 3477888887643 557888998 8753 45 4589999999999998754 345666666 567888875
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.26 E-value=1.1 Score=42.53 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=67.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCc--cchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCch-hhHHHHHHHhHHH
Q 041902 21 QGHINPALQLARRLIRIGTRVTFATTI--FAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPR-RYVSEFKRRSSEA 97 (470)
Q Consensus 21 ~GH~~P~l~la~~L~~~Gh~V~~~~~~--~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 97 (470)
.-|+.-+-.|-++|.++||+|.+.+-+ ...+.+ +. .|+.+..+..--.. .+ . ..+....+. ..
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LL-d~----ygf~~~~Igk~g~~------tl-~~Kl~~~~eR~--~~ 75 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELL-DL----YGFPYKSIGKHGGV------TL-KEKLLESAERV--YK 75 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHH-HH----hCCCeEeecccCCc------cH-HHHHHHHHHHH--HH
Confidence 346666788999999999999988765 344555 66 89999988643211 00 2 233333332 22
Q ss_pred HHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 98 LTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 98 ~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
+.++.. + .+||+.+. -.++.+.++|..+|+|.+.+.-
T Consensus 76 L~ki~~---~---~kpdv~i~-~~s~~l~rvafgLg~psIi~~D 112 (346)
T COG1817 76 LSKIIA---E---FKPDVAIG-KHSPELPRVAFGLGIPSIIFVD 112 (346)
T ss_pred HHHHHh---h---cCCceEee-cCCcchhhHHhhcCCceEEecC
Confidence 223332 2 67999999 5688899999999999999753
No 130
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.13 E-value=0.033 Score=54.72 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=75.0
Q ss_pred hCCCeEEeeccChhhhc---cccccccceecc--------Cc------hhhhhhhhcCCcEeeccccchhhHHHHHHHhh
Q 041902 338 LNEKGMIVPWCSQVEVL---SHEAVGCFVTHC--------GW------NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDF 400 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~vl---~~~~v~~~ItHG--------G~------gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~ 400 (470)
..+|+...+|+|+.++. .. +.++ |.-+ .+ +-+.++|++|+|+|+. ++...+..+++
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gL-v~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~- 277 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGL-VWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE- 277 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCe-EEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-
Confidence 45789999999987654 33 3322 2221 11 1266789999999985 55778888998
Q ss_pred hcceeEeeecCCCCcCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 041902 401 CKTGVRVKANEEGILESDEIKRCLELVMGEGD--EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 401 ~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~--~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (470)
.++|+.++ +.+++.+++.++.. +. .|+++++++++.+++ |.--..++.+++.
T Consensus 278 ~~~G~~v~-------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 278 NGLGFVVD-------SLEELPEIIDNITE-EEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred CCceEEeC-------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 89999985 45789898888654 32 689999999999885 4444445544443
No 131
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.98 E-value=1.8 Score=42.54 Aligned_cols=105 Identities=7% Similarity=0.040 Sum_probs=72.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCce-EEEcCCCCCCCCCCCCCCchhhHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLS-FASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~-~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||++-..+.|++.=..++.+.|+++ +.+|++++.+.+.+.+ +.. +.++ +++++..... ... .
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~-~~~---p~vd~vi~~~~~~~~---------~~~-~ 66 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPIL-SEN---PDINALYGLDRKKAK---------AGE-R 66 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHH-hcC---CCccEEEEeChhhhc---------chH-H
Confidence 68999999999999999999999997 8999999999988888 542 4454 3444422100 000 0
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
.+ . ...+++..++. .++|++|.-........++...|.|.-+
T Consensus 67 ~~----~-~~~~l~~~lr~---~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 67 KL----A-NQFHLIKVLRA---NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HH----H-HHHHHHHHHHh---CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 01 1 11234455554 5699999765555678888889999765
No 132
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.94 E-value=1.6 Score=42.59 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=41.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANS 56 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~ 56 (470)
||||++-..+.|++.=..++.+.|++. +.+|++++.+.+...+ +.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~-~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP-SW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH-hc
Confidence 799999999999999999999999997 8999999999888877 54
No 133
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.54 E-value=0.18 Score=44.01 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=56.5
Q ss_pred hCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccE
Q 041902 36 RIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTC 115 (470)
Q Consensus 36 ~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDl 115 (470)
.+||+|+|++........ .|++.+.+... ............-++...... ..+...+..|+++| ..||+
T Consensus 1 q~gh~v~fl~~~~~~~~~-------~GV~~~~y~~~--~~~~~~~~~~~~~~e~~~~rg-~av~~a~~~L~~~G-f~PDv 69 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP-------PGVRVVRYRPP--RGPTPGTHPYVRDFEAAVLRG-QAVARAARQLRAQG-FVPDV 69 (171)
T ss_pred CCCCEEEEEecCCCCCCC-------CCcEEEEeCCC--CCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHcC-CCCCE
Confidence 379999999954444333 48888888541 111111111022233333222 33445566677778 99999
Q ss_pred EEeCCCchhHHHHHHHc-CCCeEEE
Q 041902 116 LVYSLLLPWTAEVARAY-HLPSALL 139 (470)
Q Consensus 116 vv~d~~~~~~~~~A~~~-giP~i~~ 139 (470)
|+...-.-.+..+-+.+ ++|.+.+
T Consensus 70 I~~H~GWGe~Lflkdv~P~a~li~Y 94 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVFPDAPLIGY 94 (171)
T ss_pred EEEcCCcchhhhHHHhCCCCcEEEE
Confidence 99997655667777778 8888875
No 134
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.41 E-value=2.1 Score=41.97 Aligned_cols=105 Identities=10% Similarity=0.072 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhH
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIG--TRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYV 87 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~G--h~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (470)
.||||++-....|++.=.+++-..|+++. .++++++.+.+.+.+ +.. +.++-+-+-.. .. ..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~-~~~---p~I~~vi~~~~--~~--------~~-- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPIL-KLN---PEIDKVIIIDK--KK--------KG-- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHH-hcC---hHhhhhccccc--cc--------cc--
Confidence 48999999999999999999999999985 999999999998888 441 22322221111 00 01
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
........+.+.++. .++|+||.=.-..-...++...++|.-.
T Consensus 65 -----~~~~~~~~l~~~lr~---~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 -----LGLKERLALLRTLRK---ERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred -----cchHHHHHHHHHhhc---cCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 122333456666655 4699999877666677788888888766
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.29 E-value=1.6 Score=45.26 Aligned_cols=135 Identities=16% Similarity=0.288 Sum_probs=86.6
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHH---H--h-CCCeEEeeccChh
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKE---E--L-NEKGMIVPWCSQV 351 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~nv~v~~~vp~~ 351 (470)
+..+||++|--....++..++.-...|.....-++|.++.. -.+ ...+.. . + |+++.+.+-++..
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfP-a~g--------e~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP-AVG--------EQRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecc-ccc--------hHHHHHHHHHhCCCccceeeccccchH
Confidence 44599999988888899999999999999888899998876 211 112221 1 2 3555544444332
Q ss_pred -----hhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHH-HHHHHhhhcceeEeeecCCCCcCHHHHHHHHH
Q 041902 352 -----EVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTN-AKIIVDFCKTGVRVKANEEGILESDEIKRCLE 425 (470)
Q Consensus 352 -----~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~n-A~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~ 425 (470)
..|..-.++-..+. |+.|.++.|+.|||||.+|.-.-.... +-.+.. +|+|..+.+ +.++-.+.-.
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak------~~eEY~~iaV 899 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK------NREEYVQIAV 899 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh------hHHHHHHHHH
Confidence 23322333334444 788999999999999999976543333 344555 899987764 4444444334
Q ss_pred HHhc
Q 041902 426 LVMG 429 (470)
Q Consensus 426 ~vl~ 429 (470)
++-+
T Consensus 900 ~Lat 903 (966)
T KOG4626|consen 900 RLAT 903 (966)
T ss_pred Hhhc
Confidence 4444
No 136
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.13 E-value=3.6 Score=40.25 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=69.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCceE-EEcCCCCCCCCCCCCCCchhhHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLSF-ASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||++-..+.|++.=..++.+.|++. +.+|++++.+.+.+.+ +.. +.++- +.++.. . .. ..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~-~~~---p~id~v~~~~~~--~-----~~--~~~-- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLL-ERM---PEIRQAIDMPLG--H-----GA--LEL-- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHH-hcC---chhceeeecCCc--c-----cc--hhh--
Confidence 69999999999999999999999997 8999999999888888 542 33332 222211 0 00 111
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
....++++.++. .++|++|.-........++...|+|.-.
T Consensus 66 -------~~~~~~~~~lr~---~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 -------TERRRLGRSLRE---ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred -------hHHHHHHHHHhh---cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 111244555554 4699999876555667778888888654
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=94.75 E-value=0.64 Score=45.48 Aligned_cols=85 Identities=14% Similarity=0.160 Sum_probs=56.1
Q ss_pred hCCCeEEe---eccCh---hhhccccccccceec---cCch-hhhhhhhcCCcEeeccc------cchh------hHHHH
Q 041902 338 LNEKGMIV---PWCSQ---VEVLSHEAVGCFVTH---CGWN-SSLESLVCGVPVVAFPQ------WTDQ------GTNAK 395 (470)
Q Consensus 338 ~~~nv~v~---~~vp~---~~vl~~~~v~~~ItH---GG~g-t~~eal~~GvP~v~~P~------~~DQ------~~nA~ 395 (470)
+++++.+. +++++ ..+++.+++ +|.- -|+| +++||+++|+|+|+.-. .+|+ .++..
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 56788877 44454 357888888 8864 3444 68899999999998633 2232 22333
Q ss_pred HHHh-hhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 396 IIVD-FCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 396 rl~~-~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
...+ ..|.|..++ ..+++++.+++.+++.
T Consensus 277 ~~~~~~~g~g~~~~-----~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 277 EYYDKEHGQKWKIH-----KFQIEDMANAIILAFE 306 (335)
T ss_pred HhcCcccCceeeec-----CCCHHHHHHHHHHHHh
Confidence 3231 035555554 5899999999999955
No 138
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.51 E-value=0.42 Score=36.85 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=54.2
Q ss_pred ccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 041902 365 HCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNS-LKWKD 443 (470)
Q Consensus 365 HGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a-~~~~~ 443 (470)
+|-..-+.|++++|+|+|.-.. ......+.+ |..... -. +.+++.+.+..+++ |+..+++. ++-.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~-----~~-~~~el~~~i~~ll~-~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIIT-----YN-DPEELAEKIEYLLE-NPEERRRIAKNARE 75 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEE-----EC-CHHHHHHHHHHHHC-CHHHHHHHHHHHHH
Confidence 5566789999999999998764 333333332 422222 12 89999999999999 88544433 33333
Q ss_pred HHHHHHhcCCCcHHHHHHHHH
Q 041902 444 LAREAAKQGGSSYKNLKAFVD 464 (470)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~ 464 (470)
.+. ...+....++.|++
T Consensus 76 ~v~----~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 76 RVL----KRHTWEHRAEQILE 92 (92)
T ss_pred HHH----HhCCHHHHHHHHHC
Confidence 333 45888887777764
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.07 E-value=0.098 Score=44.43 Aligned_cols=94 Identities=17% Similarity=0.115 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCeEEEEeCccchhhh-cCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHHHh
Q 041902 26 PALQLARRLIRIGTRVTFATTIFAYRRM-ANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITG 104 (470)
Q Consensus 26 P~l~la~~L~~~Gh~V~~~~~~~~~~~v-~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (470)
-+..|+++|.++||+|++++.......- ... .|+.+..++-..... . ....... ..+.+++ .
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~-~~~~~~~-----~~~~~~l-~ 68 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEE----DGVRVHRLPLPRRPW------P-LRLLRFL-----RRLRRLL-A 68 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEE----TTEEEEEE--S-SSS------G-GGHCCHH-----HHHHHHC-H
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccccc----CCceEEeccCCccch------h-hhhHHHH-----HHHHHHH-h
Confidence 4678999999999999999876544432 023 678888776221111 0 1111111 1222333 1
Q ss_pred hhhcCCCCccEEEeCCCch-hHHHHHH-HcCCCeEEE
Q 041902 105 SENQGAQPFTCLVYSLLLP-WTAEVAR-AYHLPSALL 139 (470)
Q Consensus 105 l~~~~~~~pDlvv~d~~~~-~~~~~A~-~~giP~i~~ 139 (470)
... .+||+|.+..... ....+++ ..++|++..
T Consensus 69 ~~~---~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~ 102 (160)
T PF13579_consen 69 ARR---ERPDVVHAHSPTAGLVAALARRRRGIPLVVT 102 (160)
T ss_dssp HCT------SEEEEEHHHHHHHHHHHHHHHT--EEEE
T ss_pred hhc---cCCeEEEecccchhHHHHHHHHccCCcEEEE
Confidence 122 6799999886332 2334444 789999885
No 140
>PRK14098 glycogen synthase; Provisional
Probab=94.06 E-value=1 Score=46.77 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=55.7
Q ss_pred HhCCCeEEeeccCh---hhhccccccccceecc---Cch-hhhhhhhcCCcEeeccccc--hhhHHHHHHHhhhcceeEe
Q 041902 337 ELNEKGMIVPWCSQ---VEVLSHEAVGCFVTHC---GWN-SSLESLVCGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRV 407 (470)
Q Consensus 337 ~~~~nv~v~~~vp~---~~vl~~~~v~~~ItHG---G~g-t~~eal~~GvP~v~~P~~~--DQ~~nA~rl~~~~GvG~~l 407 (470)
+.+.++.+...++. ..+++.+|+ ++... |.| +.+||+++|+|.|+....+ |...+ ...+ -+-|..+
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~-~~~G~l~ 433 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSED-KGSGFIF 433 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCC-CCceeEe
Confidence 45678888887776 358888888 77543 333 6789999999888876543 21110 1112 3567777
Q ss_pred eecCCCCcCHHHHHHHHHHHh
Q 041902 408 KANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl 428 (470)
.. .+.+++.++|.+++
T Consensus 434 ~~-----~d~~~la~ai~~~l 449 (489)
T PRK14098 434 HD-----YTPEALVAKLGEAL 449 (489)
T ss_pred CC-----CCHHHHHHHHHHHH
Confidence 53 67899999999876
No 141
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=94.03 E-value=0.16 Score=45.57 Aligned_cols=42 Identities=17% Similarity=0.067 Sum_probs=31.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.-=-+. +.--+..|+++|++.||+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 78888776555 5556788999998889999999988766544
No 142
>PHA01630 putative group 1 glycosyl transferase
Probab=94.01 E-value=2.2 Score=41.85 Aligned_cols=110 Identities=13% Similarity=0.016 Sum_probs=63.9
Q ss_pred eccChhh---hcccccccccee---ccC-chhhhhhhhcCCcEeeccccc--hhhH---HHHHHHh----------hhcc
Q 041902 346 PWCSQVE---VLSHEAVGCFVT---HCG-WNSSLESLVCGVPVVAFPQWT--DQGT---NAKIIVD----------FCKT 403 (470)
Q Consensus 346 ~~vp~~~---vl~~~~v~~~It---HGG-~gt~~eal~~GvP~v~~P~~~--DQ~~---nA~rl~~----------~~Gv 403 (470)
.++|+.+ +++.+|+ +|. ..| -.++.||+++|+|+|+.-..+ |.-. |+..+.. -.++
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~ 273 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHV 273 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccc
Confidence 3466544 6888888 653 233 448999999999999986543 3211 1111110 0124
Q ss_pred eeEeeecCCCCcCHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 404 GVRVKANEEGILESDEIKRCLELVMGEG---DEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 404 G~~l~~~~~~~~~~~~l~~~i~~vl~~~---~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
|..+. .+.+++.+++.++|. + +.++++...-+....+ .-+-....+++.+-+.+
T Consensus 274 G~~v~------~~~~~~~~~ii~~l~-~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 274 GYFLD------PDIEDAYQKLLEALA-NWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccC------CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence 44443 367888888889988 6 4555554444444433 35656666666665543
No 143
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=1.7 Score=44.77 Aligned_cols=121 Identities=14% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHH---H--h-CCCeEEeeccC-
Q 041902 277 PKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKE---E--L-NEKGMIVPWCS- 349 (470)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~~nv~v~~~vp- 349 (470)
++.-+||++++-.....++.+..-+..+....--++|..+.+ ... ..-..+++ + + .++.++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~------~~~~~l~~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDA------EINARLRDLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcH------HHHHHHHHHHHHcCCChhheeecCCCCC
Confidence 455699999999998889988888888888877888887764 222 22222222 1 1 24555555554
Q ss_pred --hhhhccccccccce---eccCchhhhhhhhcCCcEeeccccchhhH--HHHHHHhhhcceeEee
Q 041902 350 --QVEVLSHEAVGCFV---THCGWNSSLESLVCGVPVVAFPQWTDQGT--NAKIIVDFCKTGVRVK 408 (470)
Q Consensus 350 --~~~vl~~~~v~~~I---tHGG~gt~~eal~~GvP~v~~P~~~DQ~~--nA~rl~~~~GvG~~l~ 408 (470)
|.+-+.-+|+ |. --||+.|+.|+|+.|||+|..+ ++|+- |+.-+..-+|+-..+.
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc
Confidence 4555666777 65 3799999999999999999987 56543 3444443255554443
No 144
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.14 E-value=1.2 Score=45.83 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=70.4
Q ss_pred eccChhh---hcccccccccee---ccCch-hhhhhhhcCCc----EeeccccchhhHHHHHHHhhhcceeEeeecCCCC
Q 041902 346 PWCSQVE---VLSHEAVGCFVT---HCGWN-SSLESLVCGVP----VVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 414 (470)
Q Consensus 346 ~~vp~~~---vl~~~~v~~~It---HGG~g-t~~eal~~GvP----~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~ 414 (470)
..+++.+ +++.+|+ ++. +-|.| ++.||+++|+| +|+--+.+-. . . ++-|+.+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~---~-l~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----Q---E-LNGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----H---H-hCCcEEECC-----
Confidence 4556644 5788888 765 44655 77799999999 6665544322 1 1 334667764
Q ss_pred cCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 415 LESDEIKRCLELVMGEGD--EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 415 ~~~~~l~~~i~~vl~~~~--~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
.+.+++.++|.++|+ .+ +.+++.+++++.+.+ .+...-..+|+++|.
T Consensus 407 ~d~~~lA~aI~~aL~-~~~~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 YDIDGMADAIARALT-MPLEEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 689999999999998 44 566666666766553 777787888888774
No 145
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=91.50 E-value=4.5 Score=38.72 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=82.9
Q ss_pred EEecccccCCHHHHHHHHHHHHhCCC--CEEEEEecCCCCCCCCCchhhhHHHH----HHhC-CCeEEe-eccCh---hh
Q 041902 284 VAFGTICVLEKRQVEEIARGLLDSGH--PFLWVIREHENKDKDKGEDDVVMKYK----EELN-EKGMIV-PWCSQ---VE 352 (470)
Q Consensus 284 vs~GS~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~nv~v~-~~vp~---~~ 352 (470)
|=.|-.+..+.+.++.+-..-...+. ++++-++-+ ..+ + .-...++ +..+ +++.+. +++|. ..
T Consensus 149 IlvGNSgd~SN~Hie~L~~l~~~~~~~v~ii~PlsYp-~gn--~---~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~ 222 (322)
T PRK02797 149 ILVGNSGDRSNRHIEALRALHQQFGDNVKIIVPMGYP-ANN--Q---AYIEEVRQAGLALFGAENFQILTEKLPFDDYLA 222 (322)
T ss_pred EEEeCCCCCcccHHHHHHHHHHHhCCCeEEEEECCcC-CCC--H---HHHHHHHHHHHHhcCcccEEehhhhCCHHHHHH
Confidence 34576665555544443333334454 455555442 111 1 1122222 2345 688776 77775 56
Q ss_pred hccccccccceec--cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHh
Q 041902 353 VLSHEAVGCFVTH--CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 353 vl~~~~v~~~ItH--GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl 428 (470)
+|+.||++.|+|+ =|.||++-.++.|+|+++- .+-+.|....+ .|+-+-.+. ..++...+.++=+++.
T Consensus 223 lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~e--~gv~Vlf~~---d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 223 LLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLTE--QGLPVLFTG---DDLDEDIVREAQRQLA 292 (322)
T ss_pred HHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHHh--CCCeEEecC---CcccHHHHHHHHHHHH
Confidence 9999999888875 5999999999999999986 45566666444 688886665 7788888877755543
No 146
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.17 E-value=3.1 Score=38.94 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 9 HQPHFLLVTFPAQG-HINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 9 ~~~~il~~~~~~~G-H~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
++||||+.-= .| |.--+..|+++|++.| +|+++.+.....-.
T Consensus 4 ~~M~ILltND--DGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 46 (257)
T PRK13932 4 KKPHILVCND--DGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSGM 46 (257)
T ss_pred CCCEEEEECC--CCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCCC
Confidence 5688886543 34 3345778899999888 79888877655444
No 147
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=90.87 E-value=8.3 Score=39.71 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=62.7
Q ss_pred eccChhh---hcccccccccee---ccCch-hhhhhhhcCCc----EeeccccchhhHHHHHHHhhhcceeEeeecCCCC
Q 041902 346 PWCSQVE---VLSHEAVGCFVT---HCGWN-SSLESLVCGVP----VVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGI 414 (470)
Q Consensus 346 ~~vp~~~---vl~~~~v~~~It---HGG~g-t~~eal~~GvP----~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~ 414 (470)
+++++.+ +++.+++ +|. +-|.| ++.||+++|+| +|+--..+- . +. ..-|+.+++
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-~------~~-~~~g~lv~p----- 411 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-A------EE-LSGALLVNP----- 411 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc-h------hh-cCCCEEECC-----
Confidence 6677654 5888888 663 44655 67899999999 444322221 0 10 123566654
Q ss_pred cCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHh
Q 041902 415 LESDEIKRCLELVMGEGD--EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDF 466 (470)
Q Consensus 415 ~~~~~l~~~i~~vl~~~~--~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 466 (470)
.+.+++.++|.++++ ++ +.++..++.++.+. ..+...-..+++++|
T Consensus 412 ~d~~~la~ai~~~l~-~~~~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 YDIDEVADAIHRALT-MPLEERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 689999999999998 55 23333333333332 367777777888776
No 148
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.26 E-value=1.3 Score=38.71 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=58.1
Q ss_pred EEcCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCccch--hhhcCCCCCC--CCceEEEcCCCCCCCCCCCCCCchhhHH
Q 041902 15 LVTFPAQGHINPALQLARRL-IRI-GTRVTFATTIFAY--RRMANSPTPE--DGLSFASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 15 ~~~~~~~GH~~P~l~la~~L-~~~-Gh~V~~~~~~~~~--~~v~~~~~~~--~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
++..++.||+.-++.|.+.+ .++ .++..+++..+.. .++ ++.... ....+..+|....-. ..+..
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~-~~~~~~~~~~~~~~~~~r~r~v~--------q~~~~ 72 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKA-EQLEKSSSKRHKILEIPRAREVG--------QSYLT 72 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHH-HHHHHhccccceeeccceEEEec--------hhhHh
Confidence 34567889999999999999 334 4555555544332 222 110000 111344554322111 11111
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc--hhHHHHHHHc------CCCeEEE
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL--PWTAEVARAY------HLPSALL 139 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~------giP~i~~ 139 (470)
.........+ ..+..+.. .+||+||+..-. .....+|+.+ |.+.|.+
T Consensus 73 ~~~~~l~~~~-~~~~il~r---~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 73 SIFTTLRAFL-QSLRILRR---ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred hHHHHHHHHH-HHHHHHHH---hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 1122111111 22222333 579999998644 3567778888 9998876
No 149
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.73 E-value=3.2 Score=43.35 Aligned_cols=76 Identities=11% Similarity=0.275 Sum_probs=57.0
Q ss_pred CCeEEeeccC--h-hhhccccccccceecc---CchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCC
Q 041902 340 EKGMIVPWCS--Q-VEVLSHEAVGCFVTHC---GWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEG 413 (470)
Q Consensus 340 ~nv~v~~~vp--~-~~vl~~~~v~~~ItHG---G~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~ 413 (470)
.+|.+.++.. . ..++..+.+ +|.=+ |.+|..||+.+|+||| .......|.+ ..=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEeC-----
Confidence 5666678776 3 457767776 88655 7789999999999999 3344555665 55666663
Q ss_pred CcCHHHHHHHHHHHhcCCHH
Q 041902 414 ILESDEIKRCLELVMGEGDE 433 (470)
Q Consensus 414 ~~~~~~l~~~i~~vl~~~~~ 433 (470)
+.++|.+++..+|. ++.
T Consensus 474 --d~~~l~~al~~~L~-~~~ 490 (519)
T TIGR03713 474 --DISELLKALDYYLD-NLK 490 (519)
T ss_pred --CHHHHHHHHHHHHh-CHH
Confidence 78999999999999 774
No 150
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.57 E-value=2.6 Score=34.27 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=61.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF----AYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYV 87 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~----~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (470)
|+++.+.++..|.....-++..|.++||+|.+..... ..+.+ .+ .+.+++-+......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~-~~----~~pdvV~iS~~~~~------------- 62 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAA-KE----EDADAIGLSGLLTT------------- 62 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HH----cCCCEEEEeccccc-------------
Confidence 5899999999999999999999999999998876432 22333 33 34445544322111
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCC-CccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQ-PFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~-~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
....+.++++.+++.+ . .+-+++...........++..|+=.+.
T Consensus 63 ------~~~~~~~~i~~l~~~~-~~~~~i~vGG~~~~~~~~~~~~~G~D~~~ 107 (119)
T cd02067 63 ------HMTLMKEVIEELKEAG-LDDIPVLVGGAIVTRDFKFLKEIGVDAYF 107 (119)
T ss_pred ------cHHHHHHHHHHHHHcC-CCCCeEEEECCCCChhHHHHHHcCCeEEE
Confidence 1122234444444432 2 344566665544335577888874443
No 151
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.20 E-value=2.3 Score=36.45 Aligned_cols=33 Identities=27% Similarity=0.213 Sum_probs=23.6
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 21 QGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 21 ~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
.|=-.-++.|+++|+++||+|++++........
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~ 44 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVKDPIE 44 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-S
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCCccch
Confidence 345566889999999999999999776544433
No 152
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.07 E-value=2.8 Score=38.87 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=28.7
Q ss_pred CEEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQG-HINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~G-H~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.- -.| |.--+-.|++.|+ .+++|+++.+...+.-.
T Consensus 1 mrILlTN--DDGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTN--DDGIHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEec--CCccCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 5666543 334 4444667888888 99999999998776655
No 153
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=88.33 E-value=6.9 Score=36.43 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=28.0
Q ss_pred CEEEEEcCCCcc-CHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQG-HINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~G-H~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.- -.| |.--+..|+++|++.| +|+++.+...+.-+
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~ 41 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSGT 41 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCcccc
Confidence 6776543 334 3344778899999998 89999887665554
No 154
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=87.96 E-value=6.4 Score=36.77 Aligned_cols=41 Identities=15% Similarity=-0.015 Sum_probs=27.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.-=-+. |.--+..|+++|++ +|+|+++.+...+.-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~ 41 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSAS 41 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 67666544332 33347788999975 6899999887655543
No 155
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=87.85 E-value=0.84 Score=37.92 Aligned_cols=42 Identities=29% Similarity=0.196 Sum_probs=36.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
|||++..+|+.+=.. ...+.++|+++|++|.++.++...+.+
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 689999999877666 999999999999999999999888877
No 156
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.38 E-value=1.4 Score=37.01 Aligned_cols=57 Identities=16% Similarity=0.041 Sum_probs=45.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc----hhhhcCCCCCCCCceEEEcC
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA----YRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~----~~~v~~~~~~~~g~~~~~i~ 69 (470)
+++++|++.+.++.+|-.-..-++..|.++|++|++.+...- .+.+ .+ .+.+++-+.
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a-~~----~~~d~V~lS 61 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA-IE----TDADAILVS 61 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HH----cCCCEEEEc
Confidence 467899999999999999999999999999999999976543 3333 33 456666554
No 157
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=87.28 E-value=11 Score=36.62 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=42.3
Q ss_pred ChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhH----HHHHHHhhhcceeEee
Q 041902 349 SQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGT----NAKIIVDFCKTGVRVK 408 (470)
Q Consensus 349 p~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~----nA~rl~~~~GvG~~l~ 408 (470)
|....|..++. .+||---.+.+.||+..|+|+.+++... +.. -...+++ .|+-..+.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECC
Confidence 77788888886 5778888889999999999999999876 322 2334554 56665554
No 158
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=87.15 E-value=11 Score=35.48 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=28.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.-=-+. |.--+..|+++|...| +|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~ 41 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSAT 41 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccc
Confidence 56666544333 4556888999999887 79988877655444
No 159
>PLN02939 transferase, transferring glycosyl groups
Probab=87.04 E-value=15 Score=41.02 Aligned_cols=84 Identities=10% Similarity=0.101 Sum_probs=54.7
Q ss_pred CCCeEEeeccChh---hhccccccccceecc---Cc-hhhhhhhhcCCcEeeccccc--hhhHH--HHHHHhhhcceeEe
Q 041902 339 NEKGMIVPWCSQV---EVLSHEAVGCFVTHC---GW-NSSLESLVCGVPVVAFPQWT--DQGTN--AKIIVDFCKTGVRV 407 (470)
Q Consensus 339 ~~nv~v~~~vp~~---~vl~~~~v~~~ItHG---G~-gt~~eal~~GvP~v~~P~~~--DQ~~n--A~rl~~~~GvG~~l 407 (470)
.++|.+..+.+.. .+++.+|+ ||.-. |+ .+.+||+++|+|.|+....+ |...+ ...+.+.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578877777654 58888888 88642 32 47899999999999876544 22211 11111102567777
Q ss_pred eecCCCCcCHHHHHHHHHHHhc
Q 041902 408 KANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 408 ~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
.. .+.+.|.+++.+++.
T Consensus 914 ~~-----~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-----PDEQGLNSALERAFN 930 (977)
T ss_pred cC-----CCHHHHHHHHHHHHH
Confidence 53 588889888888764
No 160
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.76 E-value=4.1 Score=39.54 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccchh
Q 041902 10 QPHFLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTIFAYR 51 (470)
Q Consensus 10 ~~~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~ 51 (470)
.+||+|++. |+-|-..=..++|..|++.|.+|.+++++....
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhs 43 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHS 43 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCc
Confidence 368999888 888999999999999999999888887665443
No 161
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=86.59 E-value=2.8 Score=37.87 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=60.2
Q ss_pred EEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCc---cchhhhcCCCCCCCCce---EEEcCCCCCCCCCC-----
Q 041902 12 HFLLVTF--PAQGHINPALQLARRLIRIGTRVTFATTI---FAYRRMANSPTPEDGLS---FASFSDGYDDGFNS----- 78 (470)
Q Consensus 12 ~il~~~~--~~~GH~~P~l~la~~L~~~Gh~V~~~~~~---~~~~~v~~~~~~~~g~~---~~~i~~~~~~~~~~----- 78 (470)
+|++++. ++-|-..-..+|+..|+.+|+.|.++=.+ .+.+.+ .|++ .+.+-+-+...+.-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDli-------mGlE~RiVYd~vdVi~g~~~l~QALI 75 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLI-------MGLENRIVYDLVDVIEGEATLNQALI 75 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhh-------hcccceeeeeehhhhcCccchhhHhh
Confidence 4556655 67789999999999999999999999655 455555 3322 22222211111100
Q ss_pred ----CCCC---chhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCC
Q 041902 79 ----KQND---PRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLL 121 (470)
Q Consensus 79 ----~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~ 121 (470)
..++ +......--....+.+..++++++.. .+|.||||.-
T Consensus 76 kDKr~~nL~lLPAsQtrdKdalt~E~v~~vv~eL~~~---~fDyIi~DsP 122 (272)
T COG2894 76 KDKRLENLFLLPASQTRDKDALTPEGVKKVVNELKAM---DFDYIIIDSP 122 (272)
T ss_pred ccccCCceEecccccccCcccCCHHHHHHHHHHHHhc---CCCEEEecCc
Confidence 0111 01111112224677888999999873 5999999953
No 162
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=86.56 E-value=12 Score=35.08 Aligned_cols=41 Identities=12% Similarity=-0.051 Sum_probs=27.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.-=-+. |.--+.+|+++|++ +|+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~ 41 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSAT 41 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccc
Confidence 67666554333 44457788888875 6899999887655544
No 163
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=86.29 E-value=1.7 Score=37.34 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD 70 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~ 70 (470)
-.|||++.-.|+-|-..=++.|+..|...|++|-=+.++...+-= .. .||+.+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gG-kR----~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGG-KR----IGFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCC-eE----eeeEEEEccC
Confidence 358999999999999999999999999999999877666655433 33 6888888863
No 164
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=86.16 E-value=15 Score=35.71 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=84.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHHh-C--CCCEEEEEecCCCCCCCCCchhhhHHHH----HHhC-CCeEEe-eccCh--
Q 041902 282 IYVAFGTICVLEKRQVEEIARGLLD-S--GHPFLWVIREHENKDKDKGEDDVVMKYK----EELN-EKGMIV-PWCSQ-- 350 (470)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~-~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~nv~v~-~~vp~-- 350 (470)
+.|=.|-.+..+.+.++.+ +++.. . +.++++-++-+ +.+ + .-.+.+. +..+ +|+.+. +++|.
T Consensus 186 ltILvGNSgd~sNnHieaL-~~L~~~~~~~~kIivPLsYg-~~n--~---~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~e 258 (360)
T PF07429_consen 186 LTILVGNSGDPSNNHIEAL-EALKQQFGDDVKIIVPLSYG-ANN--Q---AYIQQVIQAGKELFGAENFQILTEFMPFDE 258 (360)
T ss_pred eEEEEcCCCCCCccHHHHH-HHHHHhcCCCeEEEEECCCC-Cch--H---HHHHHHHHHHHHhcCccceeEhhhhCCHHH
Confidence 4444576665554444443 33332 3 35556655554 211 0 1122222 1245 577664 78875
Q ss_pred -hhhccccccccceec--cCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHH
Q 041902 351 -VEVLSHEAVGCFVTH--CGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELV 427 (470)
Q Consensus 351 -~~vl~~~~v~~~ItH--GG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~v 427 (470)
..+|..|+++.|.|. =|.|+++-.|+.|+|+++- .+-+.+-...+ .|+=+.... ++++.+.|.++=+++
T Consensus 259 Yl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~l~~--~~ipVlf~~---d~L~~~~v~ea~rql 330 (360)
T PF07429_consen 259 YLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQDLKE--QGIPVLFYG---DELDEALVREAQRQL 330 (360)
T ss_pred HHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHHHHh--CCCeEEecc---ccCCHHHHHHHHHHH
Confidence 568999999777764 5999999999999999876 45555555444 587777664 789999999998887
Q ss_pred hc
Q 041902 428 MG 429 (470)
Q Consensus 428 l~ 429 (470)
..
T Consensus 331 ~~ 332 (360)
T PF07429_consen 331 AN 332 (360)
T ss_pred hh
Confidence 65
No 165
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=85.96 E-value=13 Score=34.77 Aligned_cols=41 Identities=20% Similarity=0.067 Sum_probs=28.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||||+.-=-+. |.--+..|+++|++. |+|+++.+...+.-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~ 41 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGA 41 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCC
Confidence 56666543332 344577889999998 799999887655544
No 166
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=85.85 E-value=3.4 Score=36.94 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=37.6
Q ss_pred hCCCeEEeeccCh----hhhccccccccceeccC----chhhhhhhhcCCcEeeccccch
Q 041902 338 LNEKGMIVPWCSQ----VEVLSHEAVGCFVTHCG----WNSSLESLVCGVPVVAFPQWTD 389 (470)
Q Consensus 338 ~~~nv~v~~~vp~----~~vl~~~~v~~~ItHGG----~gt~~eal~~GvP~v~~P~~~D 389 (470)
...|+.+.++++. ..++..+++ +|+-.. .+++.||+++|+|+|+.+....
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 4578888888632 234444777 888776 7899999999999999886543
No 167
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.74 E-value=6.3 Score=36.98 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=53.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHH
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEF 90 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (470)
|+|+++...+. -..|++.|.++||+|+..+...+....... .|..-+. .+.+.
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~----~g~~~v~-~g~l~----------------- 53 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPI----HQALTVH-TGALD----------------- 53 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCccccccc----cCCceEE-ECCCC-----------------
Confidence 67777654443 457899999999999988777665433133 2211110 11110
Q ss_pred HHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch------hHHHHHHHcCCCeEEE
Q 041902 91 KRRSSEALTEIITGSENQGAQPFTCLVYSLLLP------WTAEVARAYHLPSALL 139 (470)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~------~~~~~A~~~giP~i~~ 139 (470)
...+.+++++ .++|+||--.+-+ -+..+++.+|||++++
T Consensus 54 ----~~~l~~~l~~------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 ----PQELREFLKR------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ----HHHHHHHHHh------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1112333333 4689776543322 2466788999999996
No 168
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=85.36 E-value=12 Score=41.53 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=65.2
Q ss_pred hhhcccccccccee---ccCch-hhhhhhhcCCc---Eeecc-ccchhhHHHHHHHhhhc-ceeEeeecCCCCcCHHHHH
Q 041902 351 VEVLSHEAVGCFVT---HCGWN-SSLESLVCGVP---VVAFP-QWTDQGTNAKIIVDFCK-TGVRVKANEEGILESDEIK 421 (470)
Q Consensus 351 ~~vl~~~~v~~~It---HGG~g-t~~eal~~GvP---~v~~P-~~~DQ~~nA~rl~~~~G-vG~~l~~~~~~~~~~~~l~ 421 (470)
..+++.+++ ||. .-|.| ++.|++++|+| ++++. +.+ .+. . +| -|+.+++ .+.+++.
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~-l~~~allVnP-----~D~~~lA 434 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---S-LGAGALLVNP-----WNITEVS 434 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---h-hcCCeEEECC-----CCHHHHH
Confidence 357888888 664 34777 66799999999 44444 322 122 1 33 4777765 7899999
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 422 RCLELVMGE-GDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 422 ~~i~~vl~~-~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
++|.++|+- ..+-+++.+++.+...+ .+...-.+.|+++|.+
T Consensus 435 ~AI~~aL~m~~~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 435 SAIKEALNMSDEERETRHRHNFQYVKT-----HSAQKWADDFMSELND 477 (797)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHH
Confidence 999999982 22455556666665553 5666667777777643
No 169
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=82.43 E-value=10 Score=34.08 Aligned_cols=103 Identities=10% Similarity=-0.089 Sum_probs=66.4
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCch
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF----AYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPR 84 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~----~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 84 (470)
.+-+|++.+.++..|-....-++.-|..+|++|++.+..- +.+.+ +. .+.+++-+.-.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~-~~----~~pd~v~lS~~~~~~--------- 148 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV-KK----EKPLMLTGSALMTTT--------- 148 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HH----cCCCEEEEccccccC---------
Confidence 4469999999999999999999999999999999997653 33444 44 455666554332221
Q ss_pred hhHHHHHHHhHHHHHHHHHhhhhcCC-CCccEEEeCCCchhHHHHHHHcCCCeE
Q 041902 85 RYVSEFKRRSSEALTEIITGSENQGA-QPFTCLVYSLLLPWTAEVARAYHLPSA 137 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~pDlvv~d~~~~~~~~~A~~~giP~i 137 (470)
...+.++++.+++.+. .++-++|....+ ....|++.|.=..
T Consensus 149 ----------~~~~~~~i~~l~~~~~~~~v~i~vGG~~~--~~~~~~~~gad~~ 190 (197)
T TIGR02370 149 ----------MYGQKDINDKLKEEGYRDSVKFMVGGAPV--TQDWADKIGADVY 190 (197)
T ss_pred ----------HHHHHHHHHHHHHcCCCCCCEEEEEChhc--CHHHHHHhCCcEE
Confidence 1223455555555430 235566666433 4567777776433
No 170
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=81.72 E-value=2.7 Score=34.27 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=28.2
Q ss_pred CEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 11 PHFLLVTFPAQG---HINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 11 ~~il~~~~~~~G---H~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
|||+|+.-|-.+ .-.-.++|+.+-.+|||+|.++...+..
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~ 43 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLS 43 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEE
Confidence 788888877665 3356889999999999999999877643
No 171
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=81.44 E-value=28 Score=35.58 Aligned_cols=138 Identities=10% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhC-CCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEe-eccC--hhh
Q 041902 277 PKSSVIYVAFGTICVLEKRQVEEIARGLLDS-GHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIV-PWCS--QVE 352 (470)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~-~~vp--~~~ 352 (470)
..+.++++| ..+.++.+....... +..|-+...+. -.. .+ ..+ ++. +|+.+. ++.+ ...
T Consensus 281 ~~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te-~s~------kL-~~L-~~y-~nvvly~~~~~~~l~~ 343 (438)
T TIGR02919 281 YRKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE-MSS------KL-MSL-DKY-DNVKLYPNITTQKIQE 343 (438)
T ss_pred CcccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc-ccH------HH-HHH-Hhc-CCcEEECCcChHHHHH
Confidence 344577766 245566666655553 34544322211 001 22 122 233 777776 6677 367
Q ss_pred hccccccccceeccCc--hhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcC
Q 041902 353 VLSHEAVGCFVTHCGW--NSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGE 430 (470)
Q Consensus 353 vl~~~~v~~~ItHGG~--gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~ 430 (470)
++..|++.+-|+||.- .++.||+.+|+|++..=...-. ...+. . |..+. .-+.+++.++|.++|+
T Consensus 344 ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~---~-g~l~~-----~~~~~~m~~~i~~lL~- 410 (438)
T TIGR02919 344 LYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIA---S-ENIFE-----HNEVDQLISKLKDLLN- 410 (438)
T ss_pred HHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---ccccc---C-Cceec-----CCCHHHHHHHHHHHhc-
Confidence 9999999999999653 4899999999999987533211 11111 1 44444 3468999999999999
Q ss_pred CHH-HHHHHHHHHHH
Q 041902 431 GDE-FRGNSLKWKDL 444 (470)
Q Consensus 431 ~~~-~r~~a~~~~~~ 444 (470)
+++ ++++..+-++-
T Consensus 411 d~~~~~~~~~~q~~~ 425 (438)
T TIGR02919 411 DPNQFRELLEQQREH 425 (438)
T ss_pred CHHHHHHHHHHHHHH
Confidence 884 55554444433
No 172
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=80.98 E-value=13 Score=33.42 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=65.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCch
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF----AYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPR 84 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~----~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 84 (470)
++.|+++.+.++..|-....-++.-|..+|++|++.+..- ..+.+ .+ .+.+++-+.-.+..
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~-~~----~~~d~v~lS~~~~~---------- 145 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV-KE----HKPDILGLSALMTT---------- 145 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-HH----cCCCEEEEeccccc----------
Confidence 3569999999999999999999999999999999886542 33333 33 45555555422211
Q ss_pred hhHHHHHHHhHHHHHHHHHhhhhcCCC--CccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 85 RYVSEFKRRSSEALTEIITGSENQGAQ--PFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
....+.++++.+++.+ . .+.+++..... ....++.+|.=.+.
T Consensus 146 ---------~~~~~~~~i~~lr~~~-~~~~~~i~vGG~~~--~~~~~~~~GaD~~~ 189 (201)
T cd02070 146 ---------TMGGMKEVIEALKEAG-LRDKVKVMVGGAPV--NQEFADEIGADGYA 189 (201)
T ss_pred ---------cHHHHHHHHHHHHHCC-CCcCCeEEEECCcC--CHHHHHHcCCcEEE
Confidence 1223345555555543 2 34555665432 35688888866544
No 173
>PRK14099 glycogen synthase; Provisional
Probab=80.65 E-value=31 Score=35.77 Aligned_cols=91 Identities=12% Similarity=0.120 Sum_probs=51.2
Q ss_pred hCCCe-EEeeccChh-hhc-ccccccccee---ccCch-hhhhhhhcCCcEeeccccc--hhhHHHHHHHhhh--cceeE
Q 041902 338 LNEKG-MIVPWCSQV-EVL-SHEAVGCFVT---HCGWN-SSLESLVCGVPVVAFPQWT--DQGTNAKIIVDFC--KTGVR 406 (470)
Q Consensus 338 ~~~nv-~v~~~vp~~-~vl-~~~~v~~~It---HGG~g-t~~eal~~GvP~v~~P~~~--DQ~~nA~rl~~~~--GvG~~ 406 (470)
.+.++ ...++-... .++ +.+|+ ||. +=|.| +.+||+++|+|.|+....+ |--.......+.. +.|..
T Consensus 348 ~~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l 425 (485)
T PRK14099 348 YPGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQ 425 (485)
T ss_pred CCCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEE
Confidence 45555 344663221 223 44677 775 45555 5689999998777664332 3211111000001 46877
Q ss_pred eeecCCCCcCHHHHHHHHHH---HhcCCHHHHH
Q 041902 407 VKANEEGILESDEIKRCLEL---VMGEGDEFRG 436 (470)
Q Consensus 407 l~~~~~~~~~~~~l~~~i~~---vl~~~~~~r~ 436 (470)
++. .+.++|.+++.+ ++. |++.++
T Consensus 426 ~~~-----~d~~~La~ai~~a~~l~~-d~~~~~ 452 (485)
T PRK14099 426 FSP-----VTADALAAALRKTAALFA-DPVAWR 452 (485)
T ss_pred eCC-----CCHHHHHHHHHHHHHHhc-CHHHHH
Confidence 764 578999999987 666 765443
No 174
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=79.48 E-value=3.2 Score=37.07 Aligned_cols=46 Identities=9% Similarity=-0.012 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
...+||++.-+|+.|=+.-...++++|+++||+|.++.++...+.+
T Consensus 3 l~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~ 48 (196)
T PRK08305 3 LKGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTD 48 (196)
T ss_pred CCCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHh
Confidence 3567888888886665444799999999999999999998877665
No 175
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=78.74 E-value=5.5 Score=37.65 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=35.4
Q ss_pred CeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccc
Q 041902 341 KGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 341 nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~ 386 (470)
.+.+.+-++-.+++.+++. +||-.+ .+-.||+.+|+|++++..
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3444477888899999999 999866 578999999999999864
No 176
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.03 E-value=15 Score=32.69 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=24.3
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 20 AQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 20 ~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
..|+-.....|++.|.++||+|++.+
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999987
No 177
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=77.24 E-value=2.4 Score=42.11 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=67.3
Q ss_pred CCCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeec--CCCCc
Q 041902 339 NEKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKAN--EEGIL 415 (470)
Q Consensus 339 ~~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~--~~~~~ 415 (470)
.+++..+ +..+-.++|..+|+ +||-- .+.+.|.+..++|++....-.|.+... .|.-...... ...--
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~------rg~~~~~~~~~pg~~~~ 321 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE------RGFYFDYEEDLPGPIVY 321 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT------SSBSS-TTTSSSS-EES
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc------cCCCCchHhhCCCceeC
Confidence 4677666 45567899999999 99987 568999999999999887666555221 2222221000 00124
Q ss_pred CHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 041902 416 ESDEIKRCLELVMGEGD-EFRGNSLKWKDLAREAAKQGGSSYKNLKAFV 463 (470)
Q Consensus 416 ~~~~l~~~i~~vl~~~~-~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (470)
+.++|.++|+.++. ++ .++++-+++.+++-+ ..+|.++++.++.++
T Consensus 322 ~~~eL~~~i~~~~~-~~~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 322 NFEELIEAIENIIE-NPDEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp SHHHHHHHHTTHHH-HHHHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred CHHHHHHHHHhhhh-CCHHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 68999999999998 55 466777777777754 345555555554443
No 178
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.23 E-value=6.2 Score=37.44 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=61.0
Q ss_pred CCeEEe-eccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhH--HHHHHHhhhcceeEeeecCCCCcC
Q 041902 340 EKGMIV-PWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGT--NAKIIVDFCKTGVRVKANEEGILE 416 (470)
Q Consensus 340 ~nv~v~-~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~--nA~rl~~~~GvG~~l~~~~~~~~~ 416 (470)
+|..+. .|-.+.++|-++++ .|--.|.- +-+++--|||+|.+|..+-|+. -|.|=.+-+|+.+.+-. -.
T Consensus 294 dnc~l~lsqqsfadiLH~ada--algmAGTA-tEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-----~~ 365 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADA--ALGMAGTA-TEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-----PE 365 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHH--HHHhccch-HHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-----Cc
Confidence 454444 66666777766666 55444422 3356788999999999998865 45555544566665542 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHH
Q 041902 417 SDEIKRCLELVMGEGDEFRGNSL-KWKDLARE 447 (470)
Q Consensus 417 ~~~l~~~i~~vl~~~~~~r~~a~-~~~~~~~~ 447 (470)
+..-....+++|. |+.+-..++ .=++++.+
T Consensus 366 aq~a~~~~q~ll~-dp~r~~air~nGqrRiGq 396 (412)
T COG4370 366 AQAAAQAVQELLG-DPQRLTAIRHNGQRRIGQ 396 (412)
T ss_pred hhhHHHHHHHHhc-ChHHHHHHHhcchhhccC
Confidence 3333334444999 998877777 34445544
No 179
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=76.00 E-value=52 Score=29.34 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc----cch--hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI----FAY--RRMANSPTPEDGLSFASFSDGYDDGFNSKQND 82 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~----~~~--~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 82 (470)
.+=.|.+++..+.|-..-.+.+|-+.+.+|++|.++-.- ... ..+ +.+ .++.+.....++.... .+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l-~~l---~~v~~~~~g~~~~~~~---~~~ 93 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLL-EFG---GGVEFHVMGTGFTWET---QDR 93 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHH-hcC---CCcEEEECCCCCcccC---CCc
Confidence 334899999999999999999999999999999998321 111 222 331 4688887765433221 111
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch
Q 041902 83 PRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLP 123 (470)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~ 123 (470)
. .........+....+.+.+ .++|+||-|-...
T Consensus 94 -~----e~~~~~~~~~~~a~~~l~~---~~ydlvVLDEi~~ 126 (191)
T PRK05986 94 -E----RDIAAAREGWEEAKRMLAD---ESYDLVVLDELTY 126 (191)
T ss_pred -H----HHHHHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 1 1222233444444444433 5799999996543
No 180
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=75.28 E-value=21 Score=27.27 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHHHhhh
Q 041902 27 ALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSE 106 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (470)
++.+++.|.+.|++| ++ ++...+.+ +. .|+.+..+...+..+ . + .+++.++
T Consensus 2 ~~~~~~~l~~lG~~i-~A-T~gTa~~L-~~----~Gi~~~~~~~ki~~~--------~-----------~---~i~~~i~ 52 (90)
T smart00851 2 LVELAKRLAELGFEL-VA-TGGTAKFL-RE----AGLPVKTLHPKVHGG--------I-----------L---AILDLIK 52 (90)
T ss_pred HHHHHHHHHHCCCEE-EE-ccHHHHHH-HH----CCCcceeccCCCCCC--------C-----------H---HHHHHhc
Confidence 468899999999999 34 44556777 66 677653221111110 0 0 1333333
Q ss_pred hcCCCCccEEEeCCC---------chhHHHHHHHcCCCeE
Q 041902 107 NQGAQPFTCLVYSLL---------LPWTAEVARAYHLPSA 137 (470)
Q Consensus 107 ~~~~~~pDlvv~d~~---------~~~~~~~A~~~giP~i 137 (470)
. .+.|+||.... ......+|-..+||++
T Consensus 53 ~---g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 53 N---GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred C---CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 3 57999998532 1245677888999986
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=75.24 E-value=47 Score=28.63 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=57.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCc-cch--hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFA---TTI-FAY--RRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~---~~~-~~~--~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
-|.+++.++.|-..-.+.+|-+.+.+|++|.|+ -+. ... ..+ +.+ +++.+.....+..... .+. .
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l-~~l---~~v~~~~~g~~~~~~~---~~~-~- 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKAL-ERL---PNIEIHRMGRGFFWTT---END-E- 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHH-HhC---CCcEEEECCCCCccCC---CCh-H-
Confidence 467788899999999999999999999999995 221 111 122 332 4688887765432211 111 1
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLP 123 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~ 123 (470)
.........++...+.+.. .++|+||-|-...
T Consensus 75 ---~~~~~a~~~~~~a~~~~~~---~~~dLlVLDEi~~ 106 (159)
T cd00561 75 ---EDIAAAAEGWAFAKEAIAS---GEYDLVILDEINY 106 (159)
T ss_pred ---HHHHHHHHHHHHHHHHHhc---CCCCEEEEechHh
Confidence 1122223344333333333 4699999996543
No 182
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=73.48 E-value=2.7 Score=37.32 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=30.0
Q ss_pred CEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 11 PHFLLVTFPAQGHINP------------ALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P------------~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
+|||+.+.|+.=.+.| -..||+++..+|++|+++.++.....- .++..+.+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p-------~~~~~i~v~ 67 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPP-------PGVKVIRVE 67 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTEEEEE-S
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccccc-------ccceEEEec
Confidence 4566655555555444 257899999999999999888422211 466666554
No 183
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=72.58 E-value=85 Score=29.40 Aligned_cols=87 Identities=24% Similarity=0.378 Sum_probs=57.5
Q ss_pred CCeEEeeccC---hhhhccccccccceec---cCchh-hhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCC
Q 041902 340 EKGMIVPWCS---QVEVLSHEAVGCFVTH---CGWNS-SLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEE 412 (470)
Q Consensus 340 ~nv~v~~~vp---~~~vl~~~~v~~~ItH---GG~gt-~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~ 412 (470)
.++...++++ ...++..+++ ++.. .|.|. +.||+++|+|.+... .......+.+ .+.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~-~~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVED-GETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcC-CCceE-ecC---
Confidence 6677778888 3446776777 6666 35554 599999999996654 3333444443 33477 432
Q ss_pred CCcCHHHHHHHHHHHhcCCHHHHHHHH
Q 041902 413 GILESDEIKRCLELVMGEGDEFRGNSL 439 (470)
Q Consensus 413 ~~~~~~~l~~~i~~vl~~~~~~r~~a~ 439 (470)
..+.+.+.+++..+++ +++.+++..
T Consensus 326 -~~~~~~~~~~i~~~~~-~~~~~~~~~ 350 (381)
T COG0438 326 -PGDVEELADALEQLLE-DPELREELG 350 (381)
T ss_pred -CCCHHHHHHHHHHHhc-CHHHHHHHH
Confidence 2278999999999999 774444443
No 184
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=71.87 E-value=6.5 Score=36.41 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=53.8
Q ss_pred CCceEEEEecccc---cCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCC-eEEeecc---Ch
Q 041902 278 KSSVIYVAFGTIC---VLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEK-GMIVPWC---SQ 350 (470)
Q Consensus 278 ~~~vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-v~v~~~v---p~ 350 (470)
+++.|.+..|+.. ..+.+.+.++++.+...+.++++..+.. +.+ ...-..+.+..+.+ +.+.+-. ..
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~e~ 177 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-EQE-----KEIADQIAAGLQNPVINLAGKTSLREL 177 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-HHH-----HHHHHHHHTTHTTTTEEETTTS-HHHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-HHH-----HHHHHHHHHhcccceEeecCCCCHHHH
Confidence 4567777888755 4567789999999988875554433322 100 01111111112222 3333322 23
Q ss_pred hhhccccccccceeccCchhhhhhhhcCCcEeec
Q 041902 351 VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF 384 (470)
Q Consensus 351 ~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~ 384 (470)
..++.++++ +|+.- .|.+.=|.+.|+|+|++
T Consensus 178 ~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 178 AALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred HHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 578989998 88874 59999999999999998
No 185
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=71.78 E-value=6.3 Score=36.34 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=26.6
Q ss_pred CEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPA------------LQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~------------l~la~~L~~~Gh~V~~~~~~ 47 (470)
||||+.+.|+.=.+.|. .+||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 56666666665555442 37889999999999999754
No 186
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=71.23 E-value=12 Score=35.02 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=31.0
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 041902 13 FLLVT-FPAQGHINPALQLARRLIRIGTRVTFATTIFA 49 (470)
Q Consensus 13 il~~~-~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~ 49 (470)
++|++ -|+-|...-..++|..+++.|++|.++..+..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 44444 58889999999999999999999999977653
No 187
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.13 E-value=39 Score=31.87 Aligned_cols=102 Identities=11% Similarity=0.017 Sum_probs=69.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCccchhhhcCCCCCCCCceE-EEcCCCCCCCCCCCCCCchhhHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIG--TRVTFATTIFAYRRMANSPTPEDGLSF-ASFSDGYDDGFNSKQNDPRRYVS 88 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~G--h~V~~~~~~~~~~~v~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~~~~ 88 (470)
|||++-..+.|++.-..++.++|+++. -+|++++.+...+.+ +.. +.++- +.++... . ...+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~-~~~---p~id~v~~~~~~~------~----~~~~- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLL-ELM---PEVDRVIVLPKKH------G----KLGL- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHH-hcC---CccCEEEEcCCcc------c----ccch-
Confidence 689999999999999999999999974 899999999988888 542 33332 2332111 0 0001
Q ss_pred HHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEE
Q 041902 89 EFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSAL 138 (470)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~ 138 (470)
..+.+++..++. .++|+++.-........++...+++...
T Consensus 66 -------~~~~~~~~~l~~---~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 -------GARRRLARALRR---RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred -------HHHHHHHHHHhh---cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 122345555554 4699998876555556677777877664
No 188
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=70.36 E-value=48 Score=31.17 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=56.1
Q ss_pred CEEEEEcCCCcc-CHHHHHHHHHHHHhC---CCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhh
Q 041902 11 PHFLLVTFPAQG-HINPALQLARRLIRI---GTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRY 86 (470)
Q Consensus 11 ~~il~~~~~~~G-H~~P~l~la~~L~~~---Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 86 (470)
||||+.- -.| |.--+..|+++|... |++|+++.+...+.-...++.....++...+.++. +.-.+.+ ..-
T Consensus 1 M~ILlTN--DDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~---yav~GTP-aDC 74 (261)
T PRK13931 1 MRILITN--DDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRR---FAAEGSP-ADC 74 (261)
T ss_pred CeEEEEc--CCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCe---EEEcCch-HHH
Confidence 5555433 233 444466777878773 47999998876555442222111234444443210 1011111 221
Q ss_pred HHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeC----------CCch---hHHHHHHHcCCCeEEEec
Q 041902 87 VSEFKRRSSEALTEIITGSENQGAQPFTCLVYS----------LLLP---WTAEVARAYHLPSALLWI 141 (470)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d----------~~~~---~~~~~A~~~giP~i~~~~ 141 (470)
.. -.+..++. . .+||+||+. .+++ +++.-|..+|||.+.++.
T Consensus 75 V~-------lal~~~~~---~---~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 75 VL-------AALYDVMK---D---APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HH-------HHHHHhcC---C---CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 11 11112221 1 359999984 2233 345556679999999865
No 189
>PRK05920 aromatic acid decarboxylase; Validated
Probab=70.09 E-value=7.1 Score=35.22 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=36.7
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
.+||++.-+|+.+= .-.+.+.++|.+.||+|.++.++...+.+
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 46888887776665 68999999999999999999999887766
No 190
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=69.35 E-value=67 Score=27.09 Aligned_cols=98 Identities=12% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCC-CceEEEcCCCCCCCCCCCCCCch
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPED-GLSFASFSDGYDDGFNSKQNDPR 84 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~-g~~~~~i~~~~~~~~~~~~~~~~ 84 (470)
..+|+|++.. ...+=.-++.+++.|.+. ||++ ++++...+.+ ++ . |+.+..+..+ +.+ +
T Consensus 2 ~~~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L-~~----~~Gi~v~~vi~~-~~g----g---- 63 (142)
T PRK05234 2 PARKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLI-QE----ATGLDVTRLLSG-PLG----G---- 63 (142)
T ss_pred CcCcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHH-Hh----ccCCeeEEEEcC-CCC----C----
Confidence 4567777766 445567789999999999 9995 4566777777 55 5 8877665111 000 0
Q ss_pred hhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCC--Cch--------hHHHHHHHcCCCeEEE
Q 041902 85 RYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSL--LLP--------WTAEVARAYHLPSALL 139 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~--~~~--------~~~~~A~~~giP~i~~ 139 (470)
.+.+.+++.. .+.|+||.-. ... .-..+|-..|||+++-
T Consensus 64 ----------~~~i~~~I~~------g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 64 ----------DQQIGALIAE------GKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred ----------chhHHHHHHc------CceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 1222333332 4699998843 221 3456688899999984
No 191
>PRK14099 glycogen synthase; Provisional
Probab=69.28 E-value=5.9 Score=41.07 Aligned_cols=38 Identities=18% Similarity=0.088 Sum_probs=29.1
Q ss_pred CCCEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 9 HQPHFLLVTF--------PAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 9 ~~~~il~~~~--------~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
++|||||++. |+.|++ .-.|.++|+++||+|.++++..
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv--~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADV--AGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHH--HHHHHHHHHHCCCcEEEEeCCC
Confidence 6799999875 444444 4466777999999999998853
No 192
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=69.04 E-value=4.5 Score=31.47 Aligned_cols=84 Identities=18% Similarity=0.229 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHHHhhh
Q 041902 27 ALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSE 106 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (470)
++.+|+.|.+.||++ ++++...+.+ +. .|+....+........ ... ... ++++.++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L-~~----~Gi~~~~v~~~~~~~~-~~~---g~~-------------~i~~~i~ 57 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFL-KE----HGIEVTEVVNKIGEGE-SPD---GRV-------------QIMDLIK 57 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHH-HH----TT--EEECCEEHSTG--GGT---HCH-------------HHHHHHH
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHH-HH----cCCCceeeeeecccCc-cCC---chh-------------HHHHHHH
Confidence 578999999999654 5677777777 66 7888776643211110 000 111 3334444
Q ss_pred hcCCCCccEEEeCCCch---------hHHHHHHHcCCCeE
Q 041902 107 NQGAQPFTCLVYSLLLP---------WTAEVARAYHLPSA 137 (470)
Q Consensus 107 ~~~~~~pDlvv~d~~~~---------~~~~~A~~~giP~i 137 (470)
. .+.|+||..+... .-..+|...+||++
T Consensus 58 ~---~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 58 N---GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp T---TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred c---CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 3 5799999874332 22567888999986
No 193
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=68.88 E-value=66 Score=28.19 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=59.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE---eCc-cchh--hhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFA---TTI-FAYR--RMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~---~~~-~~~~--~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
-|.+++..+.|-..-.+.+|-+...+|++|.++ =+. .+.+ .+ +. .++.+.....++.... .+. ..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l-~~----~~~~~~~~g~g~~~~~---~~~-~~ 77 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAF-EP----HGVEFQVMGTGFTWET---QNR-EA 77 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHH-Hh----cCcEEEECCCCCeecC---CCc-HH
Confidence 577788899999999999999999999999655 222 1222 33 44 5688887776543221 111 11
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL 122 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~ 122 (470)
........+....+.+.. .++|+||-|-..
T Consensus 78 ----~~~~~~~~~~~a~~~l~~---~~~DlvVLDEi~ 107 (173)
T TIGR00708 78 ----DTAIAKAAWQHAKEMLAD---PELDLVLLDELT 107 (173)
T ss_pred ----HHHHHHHHHHHHHHHHhc---CCCCEEEehhhH
Confidence 112233444444444433 579999999654
No 194
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.28 E-value=9.8 Score=31.98 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhh
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRR 52 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~ 52 (470)
.++.||++.+.+..||-...--+++.|++.|.+|...+.-...+.
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e 54 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEE 54 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHH
Confidence 478899999999999999999999999999999998865444443
No 195
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=67.95 E-value=59 Score=31.15 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
.-.|-+.-.|+-|--.=.=.|.++|.++||+|.++.-+...
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 34667777799999999999999999999999999765443
No 196
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=67.66 E-value=7.6 Score=34.38 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=36.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+||++..+|+.|=.. ...+.+.|+++|++|.++.++...+.+
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 578888888777655 899999999999999999999887777
No 197
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=67.07 E-value=79 Score=29.38 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=28.3
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 11 PHFLLVTF--PAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 11 ~~il~~~~--~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
|+++.+.. |+-|-..=..+||..|++.|++|..+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 44444433 88899999999999999999999998
No 198
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=66.65 E-value=16 Score=27.36 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
..-++++..+...|...+-.+|+.|.++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45789999999999999999999999999999876
No 199
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=66.27 E-value=8.8 Score=34.06 Aligned_cols=42 Identities=12% Similarity=0.049 Sum_probs=37.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIR-IGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~-~Gh~V~~~~~~~~~~~v 53 (470)
+||++.-+|+-| .+-...++++|.+ .||+|.++.++...+.+
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 578888888877 7779999999999 59999999999988887
No 200
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=65.87 E-value=10 Score=33.96 Aligned_cols=114 Identities=13% Similarity=0.116 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEE--EcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHH
Q 041902 25 NPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFA--SFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEII 102 (470)
Q Consensus 25 ~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (470)
.-.+.+...+..+|-+|.|+++......+.+......|-.|+ .+-.|.-... ......+..+.......+...+
T Consensus 43 ~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~~~~i~~rw~~G~LTN~----~~~~~~~~~~~~~~~~~~~k~~ 118 (193)
T cd01425 43 RLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTGSFYVNGRWLGGTLTNW----KTIRKSIKRLKKLEKEKLEKNL 118 (193)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCeeecCeecCCcCCCH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 334455567777899999998875443331221000233332 1112221110 0001112222211112222333
Q ss_pred HhhhhcCCCCccEEEeCCCc--hhHHHHHHHcCCCeEEEechh
Q 041902 103 TGSENQGAQPFTCLVYSLLL--PWTAEVARAYHLPSALLWIQP 143 (470)
Q Consensus 103 ~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~~~~ 143 (470)
..++... ..||+||.-... ..+..=|.++|||.+.+.-+.
T Consensus 119 ~g~~~~~-~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 119 GGIKDMF-RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred ccccccc-cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 3332222 579999775422 356666888999999986544
No 201
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=65.80 E-value=27 Score=33.00 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=59.6
Q ss_pred CceEEEEecccc---cCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhC-CCeE-Eeec---cCh
Q 041902 279 SSVIYVAFGTIC---VLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELN-EKGM-IVPW---CSQ 350 (470)
Q Consensus 279 ~~vV~vs~GS~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~-v~~~---vp~ 350 (470)
++.|.+..||.. ..+.+.+.++++.+...+.++++..+.. + . ..-..+.+..+ .++. +.+. -..
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~-e-~------~~~~~i~~~~~~~~~~~~~~~~~l~e~ 192 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPA-E-R------ELAEEIAAALGGPRVVNLAGKTSLREL 192 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechh-h-H------HHHHHHHHhcCCCccccCcCCCCHHHH
Confidence 457777777654 4456788888888887777776644322 1 1 11222322331 2322 2222 234
Q ss_pred hhhccccccccceeccCchhhhhhhhcCCcEeec
Q 041902 351 VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF 384 (470)
Q Consensus 351 ~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~ 384 (470)
..+++++++ +|+.-. |++.-|.+.|+|++++
T Consensus 193 ~~li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 193 AALLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 668988998 999854 7788888999999887
No 202
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=65.55 E-value=40 Score=30.62 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chhhhcCCCCCCCCceEEEcC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF----AYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~----~~~~v~~~~~~~~g~~~~~i~ 69 (470)
.+-+|++.+.++..|-....=++..|..+|++|++.+..- +.+.+ .+ .+.+++-+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~-~~----~~~~~V~lS 146 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA-KE----HKADIIGLS 146 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-HH----cCCCEEEEc
Confidence 4569999999999999999999999999999999997543 33444 33 445555443
No 203
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=65.48 E-value=39 Score=26.81 Aligned_cols=83 Identities=13% Similarity=0.193 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHH
Q 041902 23 HINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEII 102 (470)
Q Consensus 23 H~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (470)
+-.-++.+++.|.+.|+++. +++...+.+ +. .|+.+..+...- . ....+.+++
T Consensus 11 ~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l-~~----~gi~~~~v~~~~-~-------------------~~~~i~~~i 63 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKLV--ATEGTAKYL-QE----AGIPVEVVNKVS-E-------------------GRPNIVDLI 63 (110)
T ss_pred cHhHHHHHHHHHHHCCCEEE--EchHHHHHH-HH----cCCeEEEEeecC-C-------------------CchhHHHHH
Confidence 55678899999999999983 455677777 66 677766553211 0 112233333
Q ss_pred HhhhhcCCCCccEEEeCCC-------chhHHHHHHHcCCCeEE
Q 041902 103 TGSENQGAQPFTCLVYSLL-------LPWTAEVARAYHLPSAL 138 (470)
Q Consensus 103 ~~l~~~~~~~pDlvv~d~~-------~~~~~~~A~~~giP~i~ 138 (470)
+. .++|+||..+- .+.....|-.+|||+++
T Consensus 64 ~~------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 64 KN------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred Hc------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 32 57999988431 24567788899999996
No 204
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=65.23 E-value=44 Score=26.83 Aligned_cols=94 Identities=12% Similarity=0.137 Sum_probs=57.0
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHh
Q 041902 15 LVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRS 94 (470)
Q Consensus 15 ~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
|++.... +-.-++.+++.|.+.|++|. +++...+.+ .. .|+.+..+....... .. .
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i~--aT~gTa~~L-~~----~gi~~~~v~~~~~~~-----~~-~---------- 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKLY--ATEGTADFL-LE----NGIPVTPVAWPSEEP-----QN-D---------- 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEEE--EccHHHHHH-HH----cCCCceEeeeccCCC-----CC-C----------
Confidence 4444433 44568899999999999983 466666666 45 677666553210000 00 0
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEeCCC---------chhHHHHHHHcCCCeEE
Q 041902 95 SEALTEIITGSENQGAQPFTCLVYSLL---------LPWTAEVARAYHLPSAL 138 (470)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~pDlvv~d~~---------~~~~~~~A~~~giP~i~ 138 (470)
.+.+.++++. .++|+||.-+. .+.....|-.+|||+++
T Consensus 60 ~~~i~~~i~~------~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 KPSLRELLAE------GKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred chhHHHHHHc------CCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1223344443 46999998532 23457788899999974
No 205
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=65.06 E-value=49 Score=33.62 Aligned_cols=82 Identities=15% Similarity=0.304 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhH---HH-HH-HhCCCeEEe--eccChhhhccccccccceec
Q 041902 293 EKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVM---KY-KE-ELNEKGMIV--PWCSQVEVLSHEAVGCFVTH 365 (470)
Q Consensus 293 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~-~~-~~~~nv~v~--~~vp~~~vl~~~~v~~~ItH 365 (470)
...++..+-.|+......-||+-... + .+.. ++ .+ ..+.++++. +|=|-..+=--..|.|+-+|
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthp-d--------vl~gkkqg~lt~~~~~~r~~ll~edfnpisll~~~dkvy~~ts~ 235 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHP-D--------VLCGKKQGYLTQLSQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ 235 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCC-c--------hhcCcccchhhhhccCceEEEecccCChHHHHHhcceeEEeecc
Confidence 44668888889988887778865433 1 2111 11 11 234666664 44454433333455556666
Q ss_pred cCchhhhhhhhcCCcEeecccc
Q 041902 366 CGWNSSLESLVCGVPVVAFPQW 387 (470)
Q Consensus 366 GG~gt~~eal~~GvP~v~~P~~ 387 (470)
-| .|||..|+|.++..+.
T Consensus 236 mg----feall~~~~~~~fg~p 253 (671)
T COG3563 236 MG----FEALLCGKPLTTFGLP 253 (671)
T ss_pred cc----HHHHhcCCceeeecch
Confidence 66 6999999999987653
No 206
>PRK05973 replicative DNA helicase; Provisional
Probab=64.84 E-value=31 Score=31.97 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=39.1
Q ss_pred ccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 6 HRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
...+.--+++...|+.|-..=.+.++...+.+|+.|.|++.+...+.+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 344555677788899999999999999998899999999988766544
No 207
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=63.95 E-value=9.6 Score=33.84 Aligned_cols=43 Identities=9% Similarity=0.016 Sum_probs=36.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+||++.-+|+.|=+.-.+.+.++|.+.|++|+++.++......
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~ 43 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTD 43 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHH
Confidence 4788888888887777789999999999999999988766544
No 208
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=62.95 E-value=5.4 Score=39.93 Aligned_cols=40 Identities=23% Similarity=0.159 Sum_probs=29.7
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEE-eCccchh
Q 041902 12 HFLLV-TFPAQGHINPALQLARRLIRIGTRVTFA-TTIFAYR 51 (470)
Q Consensus 12 ~il~~-~~~~~GH~~P~l~la~~L~~~Gh~V~~~-~~~~~~~ 51 (470)
+|++. +..+.|-..=.+.|.++|++||++|.=+ +.|++.+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYID 43 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYID 43 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccC
Confidence 34444 3466789999999999999999999766 5555443
No 209
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=62.93 E-value=1.9e+02 Score=29.95 Aligned_cols=107 Identities=12% Similarity=0.048 Sum_probs=71.7
Q ss_pred eEEeeccChhh---hcccccccccee--ccCchhhh-hhhhcCC----cEeeccccchhhHHHHHHHhhhcceeEeeecC
Q 041902 342 GMIVPWCSQVE---VLSHEAVGCFVT--HCGWNSSL-ESLVCGV----PVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE 411 (470)
Q Consensus 342 v~v~~~vp~~~---vl~~~~v~~~It--HGG~gt~~-eal~~Gv----P~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~ 411 (470)
+++.+.+|+.+ +++.+|+ ++|| .-|+|.+. |.++++. |+|+--+.+= | +. +.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa----a---~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA----A---VE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEeccccc----h---hh-cCCCEEECC--
Confidence 34447788755 6677888 2343 46888654 9999877 5444332211 1 43 555778875
Q ss_pred CCCcCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 412 EGILESDEIKRCLELVMGEGD--EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 412 ~~~~~~~~l~~~i~~vl~~~~--~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
.+.+++.++|.++|+ .+ +-+++.+++.+.+.+ .+...=.++|+++|..
T Consensus 433 ---~d~~~~A~ai~~AL~-m~~~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ---YDPVRMDETIYVALA-MPKAEQQARMREMFDAVNY-----YDVQRWADEFLAAVSP 482 (487)
T ss_pred ---CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhh
Confidence 799999999999999 55 455666666666654 6777777788887754
No 210
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=62.78 E-value=1.4e+02 Score=28.15 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=29.1
Q ss_pred ccChhhhccccccccceeccCchhhhhhhhcCCcEeec
Q 041902 347 WCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAF 384 (470)
Q Consensus 347 ~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~ 384 (470)
+=|+-+.|..++. .++|---.+.+.||...|+|+.++
T Consensus 235 ~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 235 YNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 3488888988876 345667788899999999999654
No 211
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=62.73 E-value=15 Score=29.69 Aligned_cols=37 Identities=24% Similarity=0.229 Sum_probs=32.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
.|+++.+.+...|-.-+.-++..|.++||+|.++...
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 3789999999999999999999999999999988443
No 212
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=62.03 E-value=10 Score=33.41 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
|||.++. +.|++-- .|+++...|||+||-++....+
T Consensus 1 mKIaiIg--AsG~~Gs--~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKAGS--RILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchhHH--HHHHHHHhCCCeeEEEEeChHh
Confidence 5665543 3444432 5789999999999999765433
No 213
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=61.81 E-value=35 Score=34.77 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=27.3
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|+++||||++-.+++-| +|+++|++.++-..+++.+
T Consensus 1 ~~~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~p 36 (426)
T PRK13789 1 MQVKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFP 36 (426)
T ss_pred CCCCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEEC
Confidence 34679999999988877 6899999998554444433
No 214
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=61.47 E-value=31 Score=36.29 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=46.7
Q ss_pred hhhhcccccccccee---ccCch-hhhhhhhcCCcEeeccccc-hhhHHHHHHHhhhcceeEeeecCCC--CcCHHHHHH
Q 041902 350 QVEVLSHEAVGCFVT---HCGWN-SSLESLVCGVPVVAFPQWT-DQGTNAKIIVDFCKTGVRVKANEEG--ILESDEIKR 422 (470)
Q Consensus 350 ~~~vl~~~~v~~~It---HGG~g-t~~eal~~GvP~v~~P~~~-DQ~~nA~rl~~~~GvG~~l~~~~~~--~~~~~~l~~ 422 (470)
..+++..|++ +|. +=|+| +..||+++|+|+|+....+ ..... ..+.+....|+.+...+.. .-+.++|.+
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 5667777888 665 45655 8999999999999987543 22111 1222101257777531111 224567788
Q ss_pred HHHHHhc
Q 041902 423 CLELVMG 429 (470)
Q Consensus 423 ~i~~vl~ 429 (470)
++.+++.
T Consensus 545 ~m~~~~~ 551 (590)
T cd03793 545 YMYEFCQ 551 (590)
T ss_pred HHHHHhC
Confidence 8888876
No 215
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=60.60 E-value=46 Score=33.73 Aligned_cols=27 Identities=7% Similarity=-0.066 Sum_probs=22.8
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||++|.. +-+..+|+++|||++.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 579999988 347889999999999864
No 216
>PRK10867 signal recognition particle protein; Provisional
Probab=60.11 E-value=67 Score=32.74 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=42.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCccchhhh-------cCCCCCCCCceEEEcC
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRI-GTRVTFATTIFAYRRM-------ANSPTPEDGLSFASFS 69 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~-Gh~V~~~~~~~~~~~v-------~~~~~~~~g~~~~~i~ 69 (470)
+.-|+|+--++.|-..-+..||..|+.+ |+.|.++..+.++... .+. .|+.++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~----~gv~v~~~~ 163 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQ----IGVPVFPSG 163 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhh----cCCeEEecC
Confidence 4455666668889999999999999999 9999999988665432 133 567766553
No 217
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=59.99 E-value=1.1e+02 Score=26.10 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=70.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccc
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVG 360 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~ 360 (470)
.|-|=+||.. +....+++...|+..|..+-+.+-.. . ..|+.+.+. +....- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa-H--------R~p~~l~~~----------~~~~~~-~~~~v- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA-H--------RTPERLLEF----------VKEYEA-RGADV- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T-T--------TSHHHHHHH----------HHHTTT-TTESE-
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec-c--------CCHHHHHHH----------HHHhcc-CCCEE-
Confidence 4566678866 66778999999999987765544432 2 334433211 111000 12455
Q ss_pred cceeccCch----hhhhhhhcCCcEeeccccchhhHHHH----HHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH
Q 041902 361 CFVTHCGWN----SSLESLVCGVPVVAFPQWTDQGTNAK----IIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD 432 (470)
Q Consensus 361 ~~ItHGG~g----t~~eal~~GvP~v~~P~~~DQ~~nA~----rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~ 432 (470)
||.=.|.. ++..++. -+|++.+|...++..... .++-=.|+++..-.- .+..+...+...|-. +. |+
T Consensus 59 -iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i-~~~~nAA~~A~~ILa-~~-d~ 133 (150)
T PF00731_consen 59 -IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI-NNGFNAALLAARILA-LK-DP 133 (150)
T ss_dssp -EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS-THHHHHHHHHHHHHH-TT--H
T ss_pred -EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc-cCchHHHHHHHHHHh-cC-CH
Confidence 77766654 4444444 789999998766442221 122102555433210 012233333333332 24 78
Q ss_pred HHHHHHHHHHHHHHH
Q 041902 433 EFRGNSLKWKDLARE 447 (470)
Q Consensus 433 ~~r~~a~~~~~~~~~ 447 (470)
+++++.+.++++.++
T Consensus 134 ~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999988875
No 218
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=59.93 E-value=1.1e+02 Score=27.14 Aligned_cols=98 Identities=15% Similarity=0.146 Sum_probs=59.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC---c-cch-hhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhH
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTRVTFATT---I-FAY-RRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYV 87 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~---~-~~~-~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (470)
|.+.+..+-|-..-.+.+|-+-.-+|.+|.++-. . .+. ....+..+ .++.|+.++.++.... .+. ..
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~---~~~-~~-- 102 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWET---QDR-EA-- 102 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCC---cCc-HH--
Confidence 6777888889888888888666667777777632 1 121 22213222 4688888886665432 111 11
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLP 123 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~ 123 (470)
.. ..+...+....+.+++ .++|+||.|-+.+
T Consensus 103 -d~-~aa~~~w~~a~~~l~~---~~ydlviLDEl~~ 133 (198)
T COG2109 103 -DI-AAAKAGWEHAKEALAD---GKYDLVILDELNY 133 (198)
T ss_pred -HH-HHHHHHHHHHHHHHhC---CCCCEEEEehhhH
Confidence 11 4455566666666665 5699999996654
No 219
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=59.75 E-value=1.2e+02 Score=26.46 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=62.9
Q ss_pred ccCHHHHHHHHHHH-HhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCC-------CCC--CCCCC------CCCc-
Q 041902 21 QGHINPALQLARRL-IRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDG-------YDD--GFNSK------QNDP- 83 (470)
Q Consensus 21 ~GH~~P~l~la~~L-~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~-------~~~--~~~~~------~~~~- 83 (470)
.+.+.-.+..|++| ...|.+|.+.-+. +...+.+. .++..+.++.. +.. ..... .+..
T Consensus 16 ~~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~----~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~ 90 (176)
T PF06506_consen 16 EASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH----VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIP 90 (176)
T ss_dssp E--HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SC
T ss_pred EecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh----CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccH
Confidence 36677889999999 8899999887655 44444254 56777776421 000 00000 1110
Q ss_pred -hhhHHHHHHH--------hHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEechhhH
Q 041902 84 -RRYVSEFKRR--------SSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQPAL 145 (470)
Q Consensus 84 -~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~~~~ 145 (470)
...+...... ....+...+..++.+ +.|+||.+. ....+|+++|+|++.+.++..+
T Consensus 91 ~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~---G~~viVGg~---~~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 91 GLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE---GVDVIVGGG---VVCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp CHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT---T--EEEESH---HHHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc---CCcEEECCH---HHHHHHHHcCCcEEEEEecHHH
Confidence 1222222211 356677778888775 499999994 3688999999999998775543
No 220
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.47 E-value=39 Score=32.78 Aligned_cols=61 Identities=18% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCC---CCceEEEcC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE---DGLSFASFS 69 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~---~g~~~~~i~ 69 (470)
++--|+|+-.-+.|-..-.-.||+.|...|+.|.++..+.|+.-..+++..- .|+.++.-.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~ 201 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK 201 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC
Confidence 3445678888999999999999999999999999999998887554553211 566666553
No 221
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=59.35 E-value=15 Score=37.75 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 8 QHQPHFLLVTFPAQGHINPA------------LQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~------------l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
-..+|||+...|+.=.+.|. ..||+++..+|++||+++++.... . + .|++++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~--p--~~v~~i~V~ 320 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---D--P--QGVKVIHVE 320 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---C--C--CCceEEEec
Confidence 35679999999998888775 489999999999999998765321 1 1 566666553
No 222
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=59.19 E-value=55 Score=30.59 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=29.0
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
|||+++...+-|+ .|++.|.++|+ |.+-+..++...+
T Consensus 1 m~ILvlgGTtE~r-----~la~~L~~~g~-v~~sv~t~~g~~~ 37 (249)
T PF02571_consen 1 MKILVLGGTTEGR-----KLAERLAEAGY-VIVSVATSYGGEL 37 (249)
T ss_pred CEEEEEechHHHH-----HHHHHHHhcCC-EEEEEEhhhhHhh
Confidence 7888887777764 68999999999 7776666666666
No 223
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=58.91 E-value=69 Score=32.56 Aligned_cols=90 Identities=9% Similarity=0.054 Sum_probs=51.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF----AYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYV 87 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~----~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (470)
|+.++..+.. .+.+++-|.+-|-+|..+++.. +.+.. .. . + +.+....... ..+.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~-~~------~----~-~~~~~~v~~~----~dl~ 345 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAED-KR------W----L-EMLGVEVKYR----ASLE 345 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHH-HH------H----H-HhcCCCceec----cCHH
Confidence 6666665555 8889999999999999886663 22222 11 0 0 0000000000 0111
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
+.++.+++ .+||++|... -+..+|+++|||++.+.
T Consensus 346 ------------~~~~~l~~---~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 346 ------------DDMEAVLE---FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred ------------HHHHHHhh---CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 11123332 5799999983 36678999999999963
No 224
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=58.76 E-value=47 Score=33.92 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||++|... ....+|+++|||++.+.
T Consensus 376 ~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 4699999985 36889999999999864
No 225
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.48 E-value=33 Score=34.56 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=45.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCC---CCCceEEEc
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTP---EDGLSFASF 68 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~---~~g~~~~~i 68 (470)
.++-.|+++---+.|-..-+-.||+.|+++|+.|.+++.+-++....+++.. ..|+.|++.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 3455677777788999999999999999999999999988766543232210 057777766
No 226
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=58.12 E-value=1.3e+02 Score=26.48 Aligned_cols=137 Identities=11% Similarity=0.121 Sum_probs=72.2
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCC-eEEeecc-------Chhh
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEK-GMIVPWC-------SQVE 352 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-v~v~~~v-------p~~~ 352 (470)
+++.-.||++.. ....+++.|.+.+.++-++++.. ... ++.....+.+.++ ++...|. .|-.
T Consensus 4 Ill~vtGsiaa~---~~~~li~~L~~~g~~V~vv~T~~-A~~------fi~~~~l~~l~~~~v~~~~~~~~~~~~~~hi~ 73 (182)
T PRK07313 4 ILLAVSGSIAAY---KAADLTSQLTKRGYQVTVLMTKA-ATK------FITPLTLQVLSKNPVHLDVMDEHDPKLMNHIE 73 (182)
T ss_pred EEEEEeChHHHH---HHHHHHHHHHHCCCEEEEEEChh-HHH------HcCHHHHHHHhCCceEeccccccccCCccccc
Confidence 566666776632 23456666667777776666655 222 3332222233332 4333332 1222
Q ss_pred hccccccccceeccCchhhh-------------hhhhc--CCcEeeccc----cchh---hHHHHHHHhhhcceeEeeec
Q 041902 353 VLSHEAVGCFVTHCGWNSSL-------------ESLVC--GVPVVAFPQ----WTDQ---GTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 353 vl~~~~v~~~ItHGG~gt~~-------------eal~~--GvP~v~~P~----~~DQ---~~nA~rl~~~~GvG~~l~~~ 410 (470)
+...+|+ .+|.-+=.||+. -++.. ++|.+++|- .... ..|..++.+ .|+=+.-...
T Consensus 74 l~~~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~ 151 (182)
T PRK07313 74 LAKRADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKE 151 (182)
T ss_pred cccccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCC
Confidence 3333443 245555544322 22444 999999995 2333 567788887 7754433321
Q ss_pred ---------CCCCcCHHHHHHHHHHHhc
Q 041902 411 ---------EEGILESDEIKRCLELVMG 429 (470)
Q Consensus 411 ---------~~~~~~~~~l~~~i~~vl~ 429 (470)
...-.+.++|.+.+.+.+.
T Consensus 152 g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 152 GLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 0234456788888777665
No 227
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=58.01 E-value=31 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEE
Q 041902 23 HINPALQLARRLIR-IGTRVTFA 44 (470)
Q Consensus 23 H~~P~l~la~~L~~-~Gh~V~~~ 44 (470)
|....-+|+++|.+ +|.++.+.
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~ 23 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVE 23 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEE
Confidence 67778899999988 55444333
No 228
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=57.89 E-value=16 Score=36.67 Aligned_cols=46 Identities=24% Similarity=0.166 Sum_probs=38.7
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+..++||++..+|+. ...-...+.+.|++.|++|.++.++...+.+
T Consensus 3 ~l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi 48 (399)
T PRK05579 3 MLAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFV 48 (399)
T ss_pred CCCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 445679999888877 4557899999999999999999999877777
No 229
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=57.75 E-value=43 Score=28.71 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.6
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 17 TFPAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 17 ~~~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
+.++-|-..=.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 3466788889999999999999999996
No 230
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=57.46 E-value=27 Score=32.13 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=32.5
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccchh
Q 041902 13 FLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTIFAYR 51 (470)
Q Consensus 13 il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~ 51 (470)
|.|++. |+-|-..-++.||.+|+++|-.|+++=.+.++.
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 456666 888999999999999999999999996655443
No 231
>PLN02939 transferase, transferring glycosyl groups
Probab=57.19 E-value=15 Score=40.98 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEcCC-----CccCHHH-HHHHHHHHHhCCCeEEEEeCcc
Q 041902 6 HRQHQPHFLLVTFP-----AQGHINP-ALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 6 ~~~~~~~il~~~~~-----~~GH~~P-~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
.+.++|||+|++.- -.|-+-- .-.|.++|++.||+|.++++..
T Consensus 477 ~~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 477 GTSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 35678999998752 2344433 4478888999999999998865
No 232
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.78 E-value=21 Score=29.16 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=33.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|+++.+.++..|-.-..-++.-|+..|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 689999999999999999999999999999999764
No 233
>PRK14098 glycogen synthase; Provisional
Probab=56.62 E-value=14 Score=38.32 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=29.0
Q ss_pred CCCCEEEEEcC--------CCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 8 QHQPHFLLVTF--------PAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 8 ~~~~~il~~~~--------~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
.+.|||||++. |+.|++ .-.|.++|+++||+|.++++..
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv--~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADF--MASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHH--HHHHHHHHHHCCCeEEEEcCCC
Confidence 34499999875 344444 4567788999999999998853
No 234
>PLN02470 acetolactate synthase
Probab=56.13 E-value=51 Score=35.09 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.3
Q ss_pred cccceeccCch------hhhhhhhcCCcEeecc
Q 041902 359 VGCFVTHCGWN------SSLESLVCGVPVVAFP 385 (470)
Q Consensus 359 v~~~ItHGG~g------t~~eal~~GvP~v~~P 385 (470)
++++++|.|-| .+++|...++|+|++.
T Consensus 77 ~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 77 VGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 33488888877 6789999999999996
No 235
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.07 E-value=1.9e+02 Score=27.58 Aligned_cols=112 Identities=19% Similarity=0.295 Sum_probs=61.0
Q ss_pred eEEeeccChh---hhccccccccceeccCchhhhhhhhcCCcEe--eccccchhhHHHHHHHhhhc-ceeEeeecCCCCc
Q 041902 342 GMIVPWCSQV---EVLSHEAVGCFVTHCGWNSSLESLVCGVPVV--AFPQWTDQGTNAKIIVDFCK-TGVRVKANEEGIL 415 (470)
Q Consensus 342 v~v~~~vp~~---~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v--~~P~~~DQ~~nA~rl~~~~G-vG~~l~~~~~~~~ 415 (470)
+-+.+|+||+ .+|--|++ -+-. |--|..-|..+|+|.+ +.|+ |-...-+.++.++- ..-.+.+ -
T Consensus 240 vvklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflWHIYpQ--dentHl~KLeaFldky~~~lp~-----~ 309 (370)
T COG4394 240 VVKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLWHIYPQ--DENTHLAKLEAFLDKYCPFLPP-----N 309 (370)
T ss_pred EEEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEEEecCC--ccccHHHHHHHHHHHhCCCCCH-----H
Confidence 3345999984 58888888 3333 6689999999999996 3342 22222233332111 0001111 1
Q ss_pred CHHHHHHHHH------------HHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhh
Q 041902 416 ESDEIKRCLE------------LVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFG 467 (470)
Q Consensus 416 ~~~~l~~~i~------------~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 467 (470)
+.+.+++-.. .+-.+-+..|+.|++++..+-. .++-.+.+..|++++.
T Consensus 310 ~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~----~~dlaekLvaF~ek~~ 369 (370)
T COG4394 310 TAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIK----NPDLAEKLVAFIEKIG 369 (370)
T ss_pred HHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHcc----CccHHHHHHHHHHHhc
Confidence 1222222111 1111012677888888877664 4677777888887764
No 236
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=55.70 E-value=17 Score=33.55 Aligned_cols=44 Identities=14% Similarity=-0.017 Sum_probs=36.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCC
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANS 56 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~ 56 (470)
||++.-.|+.+=+.-.+.+.+.|+++ ||+|.++.++...+.+ +.
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i-~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV-RM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH-hh
Confidence 45666666656667899999999999 9999999999988888 54
No 237
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=55.55 E-value=57 Score=29.36 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=77.8
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhC-CCeEEeeccChhhhccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELN-EKGMIVPWCSQVEVLSH 356 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~nv~v~~~vp~~~vl~~ 356 (470)
+++++.|+.|.++. ..+..|...|+++.++.+ . .. ..+.+..+ .++..........-+..
T Consensus 10 ~k~vLVIGgG~va~-------~ka~~Ll~~ga~V~VIs~-~----------~~-~~l~~l~~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 10 NKRVVIVGGGKVAG-------RRAITLLKYGAHIVVISP-E----------LT-ENLVKLVEEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CCEEEEECCCHHHH-------HHHHHHHHCCCeEEEEcC-C----------CC-HHHHHHHhCCCEEEEecCCChhhcCC
Confidence 45688888887662 245556667777665533 2 11 12222222 33444444444555677
Q ss_pred cccccceeccCchhhhhhhh----cCCcEeeccccchhhHHH-----HHHHhhhcceeEeeecCCCCcCHHHHHHHHHHH
Q 041902 357 EAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNA-----KIIVDFCKTGVRVKANEEGILESDEIKRCLELV 427 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA-----~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~v 427 (470)
+++ +|.--+...+.+.++ .++++-+ .|.+..+ ..+.+ -++-+.+.++.....-...|++.|+.+
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~-g~l~iaIsT~G~sP~la~~lr~~ie~~ 143 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHR-GKLTISVSTDGASPKLAKKIRDELEAL 143 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEc-CCeEEEEECCCCChHHHHHHHHHHHHH
Confidence 777 888878777766655 3454433 2333222 22222 234444444222333346778888887
Q ss_pred hcCC-HHHHHHHHHHHHHHHHH
Q 041902 428 MGEG-DEFRGNSLKWKDLAREA 448 (470)
Q Consensus 428 l~~~-~~~r~~a~~~~~~~~~~ 448 (470)
+.++ ..+-+.+.++++.+++.
T Consensus 144 ~~~~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 144 YDESYESYIDFLYECRQKIKEL 165 (202)
T ss_pred cchhHHHHHHHHHHHHHHHHHh
Confidence 6512 25667777777777653
No 238
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=55.47 E-value=98 Score=31.49 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
--|+|+--++.|-..=+..||..|+.+|++|.+++.+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3456666688899999999999999999999999887765
No 239
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=55.44 E-value=39 Score=37.10 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=65.1
Q ss_pred eeccChh---hhccccccccceec---cCch-hhhhhhhcCCc---Eeecc-ccchhhHHHHHHHhhhcceeEeeecCCC
Q 041902 345 VPWCSQV---EVLSHEAVGCFVTH---CGWN-SSLESLVCGVP---VVAFP-QWTDQGTNAKIIVDFCKTGVRVKANEEG 413 (470)
Q Consensus 345 ~~~vp~~---~vl~~~~v~~~ItH---GG~g-t~~eal~~GvP---~v~~P-~~~DQ~~nA~rl~~~~GvG~~l~~~~~~ 413 (470)
.+++++. .+++.+++ ++.- -|.| ++.||+++|+| .+++. +.+. ..+ +.-|+.+++
T Consensus 347 ~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~-------~~~-l~~~llv~P---- 412 (726)
T PRK14501 347 YRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGA-------AAE-LAEALLVNP---- 412 (726)
T ss_pred eCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccch-------hHH-hCcCeEECC----
Confidence 3677765 47788888 6653 3544 77899999775 22222 1111 112 333677764
Q ss_pred CcCHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhc
Q 041902 414 ILESDEIKRCLELVMGEGD--EFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGT 468 (470)
Q Consensus 414 ~~~~~~l~~~i~~vl~~~~--~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 468 (470)
.+.+++.++|.++|+ .+ +.+++.+++++.+. ..+...-+++|++.+.+
T Consensus 413 -~d~~~la~ai~~~l~-~~~~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 -NDIEGIAAAIKRALE-MPEEEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred -CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 689999999999998 54 44455555555543 26777777788777654
No 240
>PRK06849 hypothetical protein; Provisional
Probab=55.35 E-value=22 Score=35.54 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=29.7
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
|+.+|+||+.-..+ .-.+.+++.|.++||+|.++....
T Consensus 1 ~~~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 1 MNTKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45678988874332 358999999999999999997654
No 241
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=55.35 E-value=17 Score=35.17 Aligned_cols=41 Identities=27% Similarity=0.168 Sum_probs=34.2
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCccchh
Q 041902 11 PHFLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTIFAYR 51 (470)
Q Consensus 11 ~~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~ 51 (470)
||++|+.. |+-|-..=..++|-.++++|++|.+++++....
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 78888888 888999999999999999999999998876543
No 242
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=55.03 E-value=1.1e+02 Score=26.35 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=22.7
Q ss_pred cccccceeccCch------hhhhhhhcCCcEeeccc
Q 041902 357 EAVGCFVTHCGWN------SSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 357 ~~v~~~ItHGG~g------t~~eal~~GvP~v~~P~ 386 (470)
+.+ +++|.|-| .+++|...++|+|++.-
T Consensus 64 ~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 64 LGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 555 78887776 67899999999999963
No 243
>PRK11519 tyrosine kinase; Provisional
Probab=54.81 E-value=1.7e+02 Score=32.15 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=29.9
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTF--PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~--~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
-|+++++. |+-|-..-...||..|+..|++|.++-.+
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 35555544 78899999999999999999999999543
No 244
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=54.37 E-value=16 Score=30.35 Aligned_cols=30 Identities=27% Similarity=0.257 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 24 INPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 24 ~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+.-.+=++..|+++||+|++++++...+.+
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 344677899999999999999999999888
No 245
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=54.10 E-value=60 Score=29.30 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=43.0
Q ss_pred cccccCCCCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCccch-------hhhc--CCCCCCCCceEEEcCCC
Q 041902 3 QEQHRQHQPHFLLVT-FPAQGHINPALQLARRLIRIGTRVTFATTIFAY-------RRMA--NSPTPEDGLSFASFSDG 71 (470)
Q Consensus 3 ~~~~~~~~~~il~~~-~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~-------~~v~--~~~~~~~g~~~~~i~~~ 71 (470)
.-|.+.++|||+++. .|..-.=.-++.+|++|++.+..|-++...... ..+. ...+ .|-+.+.+|++
T Consensus 100 hRqnk~~~~riVvFvGSpi~e~ekeLv~~akrlkk~~Vaidii~FGE~~~~~e~l~~fida~N~~~--~gshlv~Vppg 176 (259)
T KOG2884|consen 100 HRQNKNQKQRIVVFVGSPIEESEKELVKLAKRLKKNKVAIDIINFGEAENNTEKLFEFIDALNGKG--DGSHLVSVPPG 176 (259)
T ss_pred hhcCCCcceEEEEEecCcchhhHHHHHHHHHHHHhcCeeEEEEEeccccccHHHHHHHHHHhcCCC--CCceEEEeCCC
Confidence 347788889985554 455544467999999999999777777544321 1220 2211 66778888754
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=53.84 E-value=22 Score=33.27 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=41.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
....++|+-.++.|-..=..+||.+|..+|+.|+|++.++....+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 556899999999998888999999999999999999999988888
No 247
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=53.77 E-value=9.3 Score=39.16 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=43.9
Q ss_pred hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041902 370 SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKW 441 (470)
Q Consensus 370 t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~ 441 (470)
++.||+++|+|+++. ++..-+..+.+ .--|..+++ +.-....+.+++.++.. |++++.+..+=
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp---~~e~~~~~a~~~~kl~~-~p~l~~~~~~~ 443 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDP---GQEAVAELADALLKLRR-DPELWARMGKN 443 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCC---chHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 678999999999987 34444445554 445666664 22233379999999999 99887665543
No 248
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=53.54 E-value=2.3e+02 Score=27.86 Aligned_cols=272 Identities=12% Similarity=0.036 Sum_probs=131.4
Q ss_pred CCccEEEeCCCchhH-HHHHHHcCCCeEEEechhhHHHHHHHHhhhccCCccccccCCcccCCCCCCCCCCCCCCccCCC
Q 041902 111 QPFTCLVYSLLLPWT-AEVARAYHLPSALLWIQPALVFDVYYYYFYGYGDLIEEKVNDLIELPGLPPLTGWDLPSFMDPR 189 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~-~~~A~~~giP~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 189 (470)
.+||+-|-.+-.+.. +.+++..++|++....-|-.+..+...... +. .+.+..+
T Consensus 149 ~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q------------------------rq-~s~~l~~ 203 (465)
T KOG1387|consen 149 FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ------------------------RQ-KSGILVW 203 (465)
T ss_pred CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh------------------------hh-hcchhhh
Confidence 679988776555544 566668999999876544333222221110 00 0011110
Q ss_pred CCCCchhHHHHHHHHHHHHHHhccCCeEEEcchHhhhHHHHHHhcCCCeeEeccccCCCccCCcccCCCCCCCCCChhHH
Q 041902 190 KSNDAYSFILTCFKEQMEAIVEETDPKILVNTFDALEAETLRAIDKFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYY 269 (470)
Q Consensus 190 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (470)
-+. .-.+.|..+...+.++. +.+++|+.+.-.+-...| +...+..|=|.... +++
T Consensus 204 -~Kl---aY~rlFa~lY~~~G~~a-d~vm~NssWT~nHI~qiW-~~~~~~iVyPPC~~-------------------e~l 258 (465)
T KOG1387|consen 204 -GKL---AYWRLFALLYQSAGSKA-DIVMTNSSWTNNHIKQIW-QSNTCSIVYPPCST-------------------EDL 258 (465)
T ss_pred -HHH---HHHHHHHHHHHhccccc-eEEEecchhhHHHHHHHh-hccceeEEcCCCCH-------------------HHH
Confidence 011 12356666666555432 788999987766533222 11224444444333 444
Q ss_pred HHhhccCCCCceEEEEecccccCCH---HHHHHHHHHHHhC-----CCCEEEEEecCCCCCCCCCchhhh--HHHHH--H
Q 041902 270 MEWLSSKPKSSVIYVAFGTICVLEK---RQVEEIARGLLDS-----GHPFLWVIREHENKDKDKGEDDVV--MKYKE--E 337 (470)
Q Consensus 270 ~~~l~~~~~~~vV~vs~GS~~~~~~---~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~--~ 337 (470)
.+-....+.+-..+++.|-.-.... -++.++....+.. ..+.+++-+.. +.+ +++.+- ..+.+ .
T Consensus 259 ks~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScR-nee---D~ervk~Lkd~a~~L~ 334 (465)
T KOG1387|consen 259 KSKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCR-NEE---DEERVKSLKDLAEELK 334 (465)
T ss_pred HHHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccC-Chh---hHHHHHHHHHHHHhcC
Confidence 4433332344456666765442221 1233333333222 23334433332 211 111211 11111 4
Q ss_pred hCCCeEEeeccChhh---hccccccccceeccCch-----hhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeee
Q 041902 338 LNEKGMIVPWCSQVE---VLSHEAVGCFVTHCGWN-----SSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 338 ~~~nv~v~~~vp~~~---vl~~~~v~~~ItHGG~g-----t~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
+++++...-.+|... +|..|.. -| |+=|| ++.|++++|.=+|+---.+--. ..+..|-| -.-..
T Consensus 335 i~~~v~F~~N~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~l---DIV~~~~G--~~tGF 406 (465)
T KOG1387|consen 335 IPKHVQFEKNVPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLL---DIVTPWDG--ETTGF 406 (465)
T ss_pred CccceEEEecCCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCce---eeeeccCC--cccee
Confidence 678888887788755 4555555 22 33333 6889999997554431111000 00111111 11111
Q ss_pred cCCCCcCHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHH
Q 041902 410 NEEGILESDEIKRCLELVMGEGD----EFRGNSLKWKDLARE 447 (470)
Q Consensus 410 ~~~~~~~~~~l~~~i~~vl~~~~----~~r~~a~~~~~~~~~ 447 (470)
-..|.++-.+++.+++..|+ .+|++|++-.+++.+
T Consensus 407 ---la~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 407 ---LAPTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred ---ecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 12466777888888877444 477777777777654
No 249
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=53.53 E-value=15 Score=32.46 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||++..+|+-|-.. ...+.+.|+++|++|.++.++...+.+
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 46666666666544 488999999999999999999988887
No 250
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=53.38 E-value=24 Score=34.17 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEE
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFAS 67 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~ 67 (470)
.+|||+++-.|+.|= .+|..|++.||+|+++.... .+.+ .. .|+....
T Consensus 4 ~~m~I~IiG~GaiG~-----~lA~~L~~~g~~V~~~~r~~-~~~~-~~----~g~~~~~ 51 (313)
T PRK06249 4 ETPRIGIIGTGAIGG-----FYGAMLARAGFDVHFLLRSD-YEAV-RE----NGLQVDS 51 (313)
T ss_pred cCcEEEEECCCHHHH-----HHHHHHHHCCCeEEEEEeCC-HHHH-Hh----CCeEEEe
Confidence 348999997777773 46788999999999998765 3445 44 5666654
No 251
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=53.36 E-value=42 Score=28.85 Aligned_cols=105 Identities=21% Similarity=0.169 Sum_probs=56.5
Q ss_pred EEEEEcCCCccCHHH----HHHHHHHHHhC-CCeEEEEeCcc---chhh----hcCCCCCCCCce-EEEcCCCCCCCCCC
Q 041902 12 HFLLVTFPAQGHINP----ALQLARRLIRI-GTRVTFATTIF---AYRR----MANSPTPEDGLS-FASFSDGYDDGFNS 78 (470)
Q Consensus 12 ~il~~~~~~~GH~~P----~l~la~~L~~~-Gh~V~~~~~~~---~~~~----v~~~~~~~~g~~-~~~i~~~~~~~~~~ 78 (470)
+|+++.--..|.++| .+..|++|++. |.+|+.++-.. ..+. + .. .|++ .+.+.+.....
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l-~~----~G~d~v~~~~~~~~~~--- 72 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKAL-AK----YGADKVYHIDDPALAE--- 72 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHH-HS----TTESEEEEEE-GGGTT---
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhh-hh----cCCcEEEEecCccccc---
Confidence 355555555666666 67889999985 77887775442 3333 3 33 4553 44443221110
Q ss_pred CCCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch---hHHHHHHHcCCCeEEEe
Q 041902 79 KQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLP---WTAEVARAYHLPSALLW 140 (470)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~---~~~~~A~~~giP~i~~~ 140 (470)
.... .....+.++++. .+||+|++..... .+..+|..+|.|++.-.
T Consensus 73 ------~~~~----~~a~~l~~~~~~------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 73 ------YDPE----AYADALAELIKE------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp ------C-HH----HHHHHHHHHHHH------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred ------cCHH----HHHHHHHHHHHh------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 0011 112223333333 3599999975543 46888999999999743
No 252
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=53.12 E-value=51 Score=28.39 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=28.6
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 13 FLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 13 il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|.|.+. |+-|-..=.+.||..|+..|++|.++=.+
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344444 88899999999999999999999998543
No 253
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=52.38 E-value=20 Score=31.60 Aligned_cols=41 Identities=24% Similarity=0.229 Sum_probs=33.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
||++.-+|+.| ..-...+.+.|+++|++|.++.++...+.+
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 67777777665 446679999999999999999999887777
No 254
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=51.46 E-value=27 Score=32.35 Aligned_cols=46 Identities=15% Similarity=0.003 Sum_probs=35.2
Q ss_pred CccccccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 1 MEQEQHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
|...+.+..+++||++.-.-.==..-+-+....|.++||+|++++-
T Consensus 1 ~~~~~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 1 MTSLPPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CCCccccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 5566788888999887665554556667777888999999999964
No 255
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.06 E-value=35 Score=28.49 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=42.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
.+|++.+.++.+|-.----++..|.+.|++|...+.....+.+++.... .+.+.+-++
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~-~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIE-TKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEe
Confidence 5899999999999999988899999999999999776544433222111 455565554
No 256
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=50.38 E-value=59 Score=28.80 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=51.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHH
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRI--GTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (470)
..+.+=..+-|-+.-..+|+++|.++ |++|.+-++........+..-. .++....+|-.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-~~v~~~~~P~D------------------ 82 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-DRVDVQYLPLD------------------ 82 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-GG-SEEE---S------------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-CCeEEEEeCcc------------------
Confidence 56666678889999999999999998 8999998875544432122100 12222223322
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhH--HHHHHHcCCCeEEEec
Q 041902 90 FKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWT--AEVARAYHLPSALLWI 141 (470)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~--~~~A~~~giP~i~~~~ 141 (470)
....++.+++.+ +||++|.--...|- ...|++.|||.+.+..
T Consensus 83 ----~~~~~~rfl~~~------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 ----FPWAVRRFLDHW------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ----SHHHHHHHHHHH--------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred ----CHHHHHHHHHHh------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 123334555554 58988776555554 5567789999999744
No 257
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=49.22 E-value=25 Score=30.83 Aligned_cols=41 Identities=7% Similarity=0.082 Sum_probs=31.7
Q ss_pred EEEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCccchhhh
Q 041902 12 HFLLVTFPAQGHINP-ALQLARRLIR-IGTRVTFATTIFAYRRM 53 (470)
Q Consensus 12 ~il~~~~~~~GH~~P-~l~la~~L~~-~Gh~V~~~~~~~~~~~v 53 (470)
||++.-+++ ||... .+.+.++|++ +||+|.++.++...+.+
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi 43 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVV 43 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHH
Confidence 355555554 78755 8899999985 59999999999877665
No 258
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=48.71 E-value=1.9e+02 Score=25.58 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=30.2
Q ss_pred ccCHHH-HHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 21 QGHINP-ALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 21 ~GH~~P-~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
+|=+-- .=.|+..|.++||+|++.|.....+.-.... .|++.+.+|
T Consensus 16 YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y---~gv~l~~i~ 62 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEY---NGVRLVYIP 62 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCccc---CCeEEEEeC
Confidence 344433 3467888889999999999876553220211 578888776
No 259
>PRK09620 hypothetical protein; Provisional
Probab=48.56 E-value=21 Score=32.88 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCccCHHHH------------HHHHHHHHhCCCeEEEEeCc
Q 041902 10 QPHFLLVTFPAQGHINPA------------LQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~------------l~la~~L~~~Gh~V~~~~~~ 47 (470)
.++||+...|+.=.+.|. ..||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456776666654443332 47899999999999999754
No 260
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.99 E-value=30 Score=32.66 Aligned_cols=51 Identities=12% Similarity=0.074 Sum_probs=36.3
Q ss_pred ccccccceeccCchhhhhhhh------cCCcEeeccccchhhHHHHHHHhhhc-ceeEeeecCCCCcCHHHHHHHHHHHh
Q 041902 356 HEAVGCFVTHCGWNSSLESLV------CGVPVVAFPQWTDQGTNAKIIVDFCK-TGVRVKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt~~eal~------~GvP~v~~P~~~DQ~~nA~rl~~~~G-vG~~l~~~~~~~~~~~~l~~~i~~vl 428 (470)
.+++ +|+-||-||++.|++ .++|++.+- .| +|-. .+++.+++.+.+++++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN---------------~G~lGFL------~~~~~~~~~~~l~~i~ 91 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH---------------TGHLGFY------TDWRPFEVDKLVIALA 91 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe---------------CCCceec------ccCCHHHHHHHHHHHH
Confidence 3566 999999999999986 478887774 22 2211 2356777778888887
Q ss_pred c
Q 041902 429 G 429 (470)
Q Consensus 429 ~ 429 (470)
+
T Consensus 92 ~ 92 (265)
T PRK04885 92 K 92 (265)
T ss_pred c
Confidence 7
No 261
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=47.86 E-value=77 Score=27.70 Aligned_cols=107 Identities=22% Similarity=0.219 Sum_probs=64.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhcccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHE 357 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~ 357 (470)
++.+-.+.+|.++ ..+...+...|.+++..-+.. ....... .. .+.+.+..++++.+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~----------~~~~~~~----~~--~~~~~~l~ell~~a 92 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSP----------KPEEGAD----EF--GVEYVSLDELLAQA 92 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSC----------HHHHHHH----HT--TEEESSHHHHHHH-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccC----------Chhhhcc----cc--cceeeehhhhcchh
Confidence 4568888999988 446666777888877655544 1111111 11 12667889999999
Q ss_pred ccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcce-eEeeecCCCCcCHHHHHHHHHH
Q 041902 358 AVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTG-VRVKANEEGILESDEIKRCLEL 426 (470)
Q Consensus 358 ~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG-~~l~~~~~~~~~~~~l~~~i~~ 426 (470)
|+ ++.|.-.+. ...+..|+..++. ++=| +.++....+-++.+.|.++++.
T Consensus 93 Di--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 93 DI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHhh
Confidence 99 888764322 1356677777776 7755 3445444566677777666653
No 262
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=47.13 E-value=1.3e+02 Score=27.41 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.5
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 15 LVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 15 ~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
+----+.|-.-=+..++.-+...||.|++++++...
T Consensus 33 IEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~ 68 (235)
T COG2874 33 IEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTV 68 (235)
T ss_pred EECCCCccHHHHHHHHHHHHHhCCceEEEEEechhH
Confidence 333356677778889999999999999999988533
No 263
>PRK08506 replicative DNA helicase; Provisional
Probab=46.72 E-value=1.5e+02 Score=30.59 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=38.7
Q ss_pred ccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 6 HRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
...+.-=+++...|+.|-..=.+.+|......|+.|.|++.+-....+
T Consensus 188 G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql 235 (472)
T PRK08506 188 GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL 235 (472)
T ss_pred CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence 344555667788899999999999999998899999999887655544
No 264
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=46.68 E-value=60 Score=28.73 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 25 NPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 25 ~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
.-++.+|+.|.+.|+++. .++...+.+ +. .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~--AT~GTAk~L-~e----~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL--STGGTAKFL-KE----AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE--EccHHHHHH-HH----cCCeEEEhh
Confidence 447899999999999984 555677777 66 788887774
No 265
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=46.60 E-value=47 Score=34.24 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC--CCCCCCCC---CCCCchhhHHHHHHHhHHHHH
Q 041902 25 NPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD--GYDDGFNS---KQNDPRRYVSEFKRRSSEALT 99 (470)
Q Consensus 25 ~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 99 (470)
.-++.+|+.|.+.|+++. .+....+.+ +. .|+.+..+.+ ++|+...- +-.+ . +....+. .....
T Consensus 11 ~~iv~lAk~L~~lGfeIi--ATgGTak~L-~e----~GI~v~~Vsk~TgfPEil~GRVKTLHP-~-IhgGiLa--rr~~~ 79 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL--STGGTAKLL-AE----AGVPVTEVSDYTGFPEMMDGRVKTLHP-K-VHGGILA--RRGDD 79 (511)
T ss_pred ccHHHHHHHHHHCCCEEE--EechHHHHH-HH----CCCeEEEeecccCCchhhCCccccCCc-h-hhhhhhc--CCCch
Confidence 347799999999999984 667777777 66 7888887742 44433211 1111 1 1111111 11112
Q ss_pred HHHHhhhhcCCCCccEEEeCCC
Q 041902 100 EIITGSENQGAQPFTCLVYSLL 121 (470)
Q Consensus 100 ~~~~~l~~~~~~~pDlvv~d~~ 121 (470)
+ ++++++.+..+.|+||++.+
T Consensus 80 ~-~~~l~~~~I~~IDlVvvNLY 100 (511)
T TIGR00355 80 D-DADLEEHGIEPIDLVVVNLY 100 (511)
T ss_pred H-HHHHHHcCCCceeEEEEecc
Confidence 2 44444444367899999843
No 266
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=46.45 E-value=26 Score=35.10 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=36.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
.+||++..+|+.|= .-.+.+.+.|.+.|++|.++.++...+.+
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv 45 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFI 45 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHH
Confidence 56888888887665 55899999999999999999999877776
No 267
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=45.99 E-value=1.1e+02 Score=30.20 Aligned_cols=114 Identities=11% Similarity=0.099 Sum_probs=59.8
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEee
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVP 346 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~ 346 (470)
-+-.+...++++|.|||++-|=..+ .+.....+..|.+..-.+|-+..... -.|+.+
T Consensus 119 ldAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~A~~~~~~Nfsvl~~hk----------l~PPa~------------ 175 (364)
T PRK15062 119 LDALKIARENPDKEVVFFAIGFETT-APATAATLLQAKAEGLKNFSVLSSHK----------LVPPAM------------ 175 (364)
T ss_pred HHHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCCEEEEEecc----------ccHHHH------------
Confidence 4555566677889999998885443 22333344445444334554443322 334333
Q ss_pred ccChhhhcccc--ccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHH
Q 041902 347 WCSQVEVLSHE--AVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCL 424 (470)
Q Consensus 347 ~vp~~~vl~~~--~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i 424 (470)
..+|..+ .+++||.-|-..|+.-+ ..+....++ .|+-..+. .|++.+|..+|
T Consensus 176 ----~~ll~~~~~~idgfi~PGHVstI~G~----------------~~y~~l~~~-y~~P~VVa-----GFEp~DiL~ai 229 (364)
T PRK15062 176 ----RALLEDPELRIDGFIAPGHVSTIIGT----------------EPYEFLAEE-YGIPVVVA-----GFEPLDILQSI 229 (364)
T ss_pred ----HHHHcCCCCCccEEEecCEeEEEecc----------------chhHHHHHH-cCCCeEEe-----ccCHHHHHHHH
Confidence 2333333 36667777655544322 112233343 56655554 36676666666
Q ss_pred HHHhc
Q 041902 425 ELVMG 429 (470)
Q Consensus 425 ~~vl~ 429 (470)
..++.
T Consensus 230 ~~lv~ 234 (364)
T PRK15062 230 LMLVR 234 (364)
T ss_pred HHHHH
Confidence 66653
No 268
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=45.81 E-value=1.4e+02 Score=25.04 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=21.9
Q ss_pred cccccceeccCch------hhhhhhhcCCcEeeccc
Q 041902 357 EAVGCFVTHCGWN------SSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 357 ~~v~~~ItHGG~g------t~~eal~~GvP~v~~P~ 386 (470)
+.+ +++|+|-| .+.+|...++|+|++..
T Consensus 60 ~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 445 78887766 67788999999999963
No 269
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=45.66 E-value=49 Score=27.50 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc----hhhhcCCCCCCCCceEEEcC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA----YRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~----~~~v~~~~~~~~g~~~~~i~ 69 (470)
++.||++.+.+..+|-..---++..|...|++|........ .+.+ .+ .+.+++-+.
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-~e----~~adii~iS 60 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQA-VE----ADVHVVGVS 60 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-HH----cCCCEEEEc
Confidence 46799999999999999998889999999999998875433 3333 33 566666654
No 270
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.65 E-value=32 Score=32.96 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=33.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEE
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFA 66 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~ 66 (470)
|||+|+-.|+.|. .+|..|++.||+|+++..+...+.+ .. .|+...
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~g~~V~~~~r~~~~~~~-~~----~g~~~~ 46 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEAGRDVTFLVRPKRAKAL-RE----RGLVIR 46 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHCCCceEEEecHHHHHHH-Hh----CCeEEE
Confidence 6888887777763 5788899999999999875555555 44 555544
No 271
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=45.25 E-value=1e+02 Score=26.52 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=21.5
Q ss_pred cccccceeccCch------hhhhhhhcCCcEeeccc
Q 041902 357 EAVGCFVTHCGWN------SSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 357 ~~v~~~ItHGG~g------t~~eal~~GvP~v~~P~ 386 (470)
+.+ +++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGA--LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEE--EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 445 67776666 56789999999999964
No 272
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.18 E-value=1.1e+02 Score=28.14 Aligned_cols=43 Identities=7% Similarity=0.077 Sum_probs=33.3
Q ss_pred HHHhHHHHHHHHHhhhhcCCCCccEEEeCCCch---hHHHHHHHcCCCeEE
Q 041902 91 KRRSSEALTEIITGSENQGAQPFTCLVYSLLLP---WTAEVARAYHLPSAL 138 (470)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~---~~~~~A~~~giP~i~ 138 (470)
+......++.+++++++ -++.+.|..++ .+..+|.+.|||++.
T Consensus 133 ~tsn~~aM~~~m~~Lk~-----r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 133 FTSNEDAMEKLMEALKE-----RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred hcCcHHHHHHHHHHHHH-----CCeEEEcccccccchhhhhHhhcCCceee
Confidence 33456677788888864 78999998775 457889999999987
No 273
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=45.06 E-value=2e+02 Score=26.39 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=27.5
Q ss_pred CEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 11 PHFLLVTFP--AQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 11 ~~il~~~~~--~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
|+.+|++.- .-|-..-.-.|++.|+.+|++|...
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~ 37 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGY 37 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEE
Confidence 566777663 3478888889999999999999987
No 274
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=44.94 E-value=2.4e+02 Score=26.35 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=26.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYR 51 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~ 51 (470)
++|+++...+-|. .||+.|.++|+.|.+-+...+..
T Consensus 3 ~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g~ 38 (248)
T PRK08057 3 PRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTGG 38 (248)
T ss_pred ceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCCC
Confidence 5788877766664 68899999999888876555444
No 275
>PRK11914 diacylglycerol kinase; Reviewed
Probab=44.90 E-value=98 Score=29.76 Aligned_cols=82 Identities=10% Similarity=0.014 Sum_probs=49.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccc
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVG 360 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~ 360 (470)
+++++--|-.....+.+..+...|+..+..+.+..... . .....+.++ ......++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~-~--------~~~~~~a~~--------------~~~~~~d~- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD-A--------HDARHLVAA--------------ALAKGTDA- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC-H--------HHHHHHHHH--------------HHhcCCCE-
Confidence 44555544333334567778888888888776555433 1 111112111 11122455
Q ss_pred cceeccCchhhhhhh----hcCCcEeecccc
Q 041902 361 CFVTHCGWNSSLESL----VCGVPVVAFPQW 387 (470)
Q Consensus 361 ~~ItHGG~gt~~eal----~~GvP~v~~P~~ 387 (470)
+|.-||=||+.|++ ..++|+-++|..
T Consensus 68 -vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 68 -LVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred -EEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 99999999999887 347999999963
No 276
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=44.75 E-value=59 Score=27.99 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=55.0
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEee
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVP 346 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~ 346 (470)
.++..|+.+++ ...|+-|.. .....+.++..+.+-.++-+++.. ... ... .........
T Consensus 21 ~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~-l~~--------~~~----~~~~~i~~~ 79 (159)
T TIGR00725 21 YRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDE-DFA--------GNP----YLTIKVKTG 79 (159)
T ss_pred HHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChh-hcc--------CCC----CceEEEECC
Confidence 56777887654 344553322 344556666667777777666543 100 000 011112223
Q ss_pred c-cChhhhccccccccceeccCchhhh---hhhhcCCcEeeccc
Q 041902 347 W-CSQVEVLSHEAVGCFVTHCGWNSSL---ESLVCGVPVVAFPQ 386 (470)
Q Consensus 347 ~-vp~~~vl~~~~v~~~ItHGG~gt~~---eal~~GvP~v~~P~ 386 (470)
+ .+-..++...+-+.++--||.||.- |++.+++|+++++.
T Consensus 80 ~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 80 MNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3 3444444443334567789999865 46889999999884
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.12 E-value=1.6e+02 Score=30.04 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLI-RIGTRVTFATTIFAYR 51 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~-~~Gh~V~~~~~~~~~~ 51 (470)
--++|+..++.|-..=+..||..|. ++|++|.++..+.++.
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 3456666688999999999999997 5899999999886654
No 278
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=44.11 E-value=1.4e+02 Score=30.57 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=58.9
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc-cchh--hhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhH
Q 041902 12 HFLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI-FAYR--RMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYV 87 (470)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~-~~~~--~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 87 (470)
+|++..+ ..-|-..=...|++.|+++|++|..+-+. +..+ ..... .|.....+ +. ..+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~~~~~~----~g~~~~~l------------d~-~~~- 66 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPAYHTAA----TGRPSRNL------------DS-WMM- 66 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHHHHHHH----hCCCcccC------------Cc-eeC-
Confidence 3444433 44578888999999999999999988442 1111 00000 11111000 01 100
Q ss_pred HHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCC------------chhHHHHHHHcCCCeEEEechh
Q 041902 88 SEFKRRSSEALTEIITGSENQGAQPFTCLVYSLL------------LPWTAEVARAYHLPSALLWIQP 143 (470)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~------------~~~~~~~A~~~giP~i~~~~~~ 143 (470)
..+.+.+.++.+. .+.|++|++.. ......+|+.++.|++.+....
T Consensus 67 ------~~~~v~~~~~~~~----~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 67 ------GEELVRALFARAA----QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred ------CHHHHHHHHHHhc----ccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 1233444444443 34799997543 1236789999999999998543
No 279
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=43.71 E-value=38 Score=32.44 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=37.1
Q ss_pred cccccccceeccCchhhhhhhhc----CCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 355 SHEAVGCFVTHCGWNSSLESLVC----GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 355 ~~~~v~~~ItHGG~gt~~eal~~----GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..+++ +|+-||-||+++|++. ++|++.+-.. .+|.. ..++.+++.+.+.+++.
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL------~~~~~~~~~~~l~~~~~ 118 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFI------TDIPLDDMQETLPPMLA 118 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Ccccc------ccCCHHHHHHHHHHHHc
Confidence 34666 9999999999999774 6787766311 12222 24677888888888877
No 280
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.62 E-value=36 Score=32.52 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=37.6
Q ss_pred hccccccccceeccCchhhhhhhh----cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHh
Q 041902 353 VLSHEAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 353 vl~~~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl 428 (470)
+...+++ +|+-||-||++.|.+ .++|++.+-.+ .+|- + .+++.+++.+++++++
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGF-L-----t~~~~~~~~~~l~~i~ 118 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG--------------HLGF-L-----TDITVDEAEKFFQAFF 118 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC--------------Cccc-C-----CcCCHHHHHHHHHHHH
Confidence 3345677 999999999998866 37787766311 0222 1 2467788888888887
Q ss_pred c
Q 041902 429 G 429 (470)
Q Consensus 429 ~ 429 (470)
.
T Consensus 119 ~ 119 (287)
T PRK14077 119 Q 119 (287)
T ss_pred c
Confidence 7
No 281
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=43.53 E-value=45 Score=29.77 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=29.6
Q ss_pred CCCEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 9 HQPHFLLVTF--PAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 9 ~~~~il~~~~--~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
.+||++.++. ++-|-..=...||..|+++|++|.++=.
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 3366655554 6667888899999999999999998843
No 282
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.36 E-value=65 Score=29.81 Aligned_cols=33 Identities=12% Similarity=-0.050 Sum_probs=23.6
Q ss_pred CccEEEe-CCCc-hhHHHHHHHcCCCeEEEechhh
Q 041902 112 PFTCLVY-SLLL-PWTAEVARAYHLPSALLWIQPA 144 (470)
Q Consensus 112 ~pDlvv~-d~~~-~~~~~~A~~~giP~i~~~~~~~ 144 (470)
-||+||. |+.. --+..=|.++|||+|.+.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3898854 6543 3466668899999999876554
No 283
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.06 E-value=1.5e+02 Score=28.84 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=59.8
Q ss_pred CCEEEEEcCCCcc-----CHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCch
Q 041902 10 QPHFLLVTFPAQG-----HINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPR 84 (470)
Q Consensus 10 ~~~il~~~~~~~G-----H~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 84 (470)
+..|+|.+..+.| -..-+..|++.|.++|++|.+..++...+.. +.+. .++..... +.. +.
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~-~~i~--~~~~~~~~---l~~------k~-- 240 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERA-EEIA--KGLPNAVI---LAG------KT-- 240 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHH-HHHH--HhcCCccc---cCC------CC--
Confidence 4577777773442 2345889999999999999999888544444 3211 01110000 100 00
Q ss_pred hhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEech
Q 041902 85 RYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~ 142 (470)
....+..++. ..|++|+. .++..++|..+|.|+|.+...
T Consensus 241 ---------sL~e~~~li~--------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 241 ---------SLEELAALIA--------GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ---------CHHHHHHHHh--------cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 1122223332 36998886 356899999999999998643
No 284
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=42.91 E-value=3.5e+02 Score=26.84 Aligned_cols=83 Identities=19% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHH-HHHHHHh-CCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChh---hhccccccccceeccCc
Q 041902 294 KRQVEE-IARGLLD-SGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQV---EVLSHEAVGCFVTHCGW 368 (470)
Q Consensus 294 ~~~~~~-~~~al~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~---~vl~~~~v~~~ItHGG~ 368 (470)
.+.+.+ +-..|.. .+.+|++ .+.+ ++. ++++...+.+ .+.+++.+.+-+|++ ++|...++ |++-.=.
T Consensus 210 iDll~~iIp~vc~~~p~vrfii-~GDG-Pk~--i~lee~lEk~--~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlT 281 (426)
T KOG1111|consen 210 IDLLLEIIPSVCDKHPEVRFII-IGDG-PKR--IDLEEMLEKL--FLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLT 281 (426)
T ss_pred hHHHHHHHHHHHhcCCCeeEEE-ecCC-ccc--chHHHHHHHh--hccCceEEecccchHHHHHHHhcCcE--EeccHHH
Confidence 455444 4445554 3355544 5555 333 1111222211 356888888999985 47877787 7765433
Q ss_pred h----hhhhhhhcCCcEeec
Q 041902 369 N----SSLESLVCGVPVVAF 384 (470)
Q Consensus 369 g----t~~eal~~GvP~v~~ 384 (470)
- ++.||..+|.|+|..
T Consensus 282 Eafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred HHHHHHHHHHHhCCCEEEEe
Confidence 3 567999999999875
No 285
>PRK05595 replicative DNA helicase; Provisional
Probab=42.63 E-value=1.6e+02 Score=30.14 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=36.5
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchhhh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLI-RIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~-~~Gh~V~~~~~~~~~~~v 53 (470)
..++-=+++...|+.|-..=.+.+|..++ +.|+.|.|++.+-..+.+
T Consensus 198 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l 245 (444)
T PRK05595 198 FQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQL 245 (444)
T ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHH
Confidence 44454566777899999999999998876 569999999887655444
No 286
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.42 E-value=28 Score=33.29 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=28.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC-ccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT-IFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~-~~~~~~v 53 (470)
|||.++-.|+.| ..+|..|.+.||+|+++.. +...+.+
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~ 39 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDAL 39 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHH
Confidence 678888777666 4578889999999999987 4444555
No 287
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=42.35 E-value=3.6e+02 Score=26.86 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=40.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCcc-chhhhcCCCCCC------CCceEEEcCCCC
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRI-GTRVTFATTIF-AYRRMANSPTPE------DGLSFASFSDGY 72 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~-Gh~V~~~~~~~-~~~~v~~~~~~~------~g~~~~~i~~~~ 72 (470)
|++-..-=+|++--+.+||+.|++. |++|++.+.+- ....+....... .|++........
T Consensus 3 IFC~VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDdl~af~~i~P~~~~~~~~q~~~gv~i~~W~~~~ 70 (374)
T PF10093_consen 3 IFCRVIDNFGDIGVCWRLARQLAAEHGQQVRLWVDDLAAFARICPDLDPELSQQTIQGVEIRHWDAPF 70 (374)
T ss_pred eeEEeccCCcchHHHHHHHHHHHHHhCCeEEEEECCHHHHHHhCCCCCcccccceECCeEEEecCCcc
Confidence 3344445689999999999999998 99999998762 333332332211 466666665443
No 288
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=42.34 E-value=92 Score=30.25 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=57.2
Q ss_pred CEEEEEcCCCcc---C--HHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 11 PHFLLVTFPAQG---H--INPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 11 ~~il~~~~~~~G---H--~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
.-|+|.++.+.| . ..-+..|++.|.+.|++|.+++++...+.. +.+. .. .+..... ..+..
T Consensus 175 ~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~-~~i~--~~-----~~~~~~~---l~g~~--- 240 (334)
T TIGR02195 175 PIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAG-NEIE--AL-----LPGELRN---LAGET--- 240 (334)
T ss_pred CEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHH-HHHH--Hh-----CCccccc---CCCCC---
Confidence 345555554333 2 235789999999999999999887655544 2210 00 0100000 00010
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
....+..++. +-|++|+.. .+..++|..+|+|.+.++.
T Consensus 241 --------sL~el~ali~--------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 241 --------SLDEAVDLIA--------LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred --------CHHHHHHHHH--------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 1122223332 369999973 4689999999999998754
No 289
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=41.89 E-value=1.3e+02 Score=27.24 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=26.6
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 13 FLLVTF-PAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 13 il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
|++... +.-|-..=.+.|++.|+++|++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 444434 556899999999999999999998863
No 290
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.76 E-value=3.6e+02 Score=27.21 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=79.2
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCC-eEEeec-------cCh
Q 041902 279 SSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEK-GMIVPW-------CSQ 350 (470)
Q Consensus 279 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-v~v~~~-------vp~ 350 (470)
+.+++.-.||++.. ..-.++..|.+.|.++-++++.. ... .+.....+.+..+ ++...| +.|
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~-A~~------fi~~~~l~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEA-AKK------FVTPLTFQALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHh-HHH------HHhHHHHHHhhCCceEccccccccCCCcch
Confidence 34777777777632 34456677777888887777665 222 3322222234444 433222 234
Q ss_pred hhhccccccccceeccCchhhh-------------hhhhcCCcEeeccccc----h---hhHHHHHHHhhhcceeEeeec
Q 041902 351 VEVLSHEAVGCFVTHCGWNSSL-------------ESLVCGVPVVAFPQWT----D---QGTNAKIIVDFCKTGVRVKAN 410 (470)
Q Consensus 351 ~~vl~~~~v~~~ItHGG~gt~~-------------eal~~GvP~v~~P~~~----D---Q~~nA~rl~~~~GvG~~l~~~ 410 (470)
-.+.+.+|+ .+|--+=.||+. -++.+++|++++|-.- . -..|..+|.+ .|+-+. .+.
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii-~P~ 153 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEII-GPA 153 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEE-CCC
Confidence 455544554 356666555443 3466799999999322 2 3567777887 776553 321
Q ss_pred C----------CCCcCHHHHHHHHHHHhc
Q 041902 411 E----------EGILESDEIKRCLELVMG 429 (470)
Q Consensus 411 ~----------~~~~~~~~l~~~i~~vl~ 429 (470)
. ..-.+.++|...+.+.+.
T Consensus 154 ~g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 154 SGRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred CccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 1 234567888888888775
No 291
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=41.66 E-value=38 Score=34.87 Aligned_cols=44 Identities=25% Similarity=0.166 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
..+||++..+|+.+ .+-...|.+.|+++|++|.++.++...+.+
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv 112 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFV 112 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHh
Confidence 35789888887655 347899999999999999999999888877
No 292
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=41.27 E-value=1.7e+02 Score=29.82 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=22.6
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||++|.+.. ...+|+++|||++.++
T Consensus 371 ~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 371 LKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred cCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 46999999953 5789999999999863
No 293
>PRK00784 cobyric acid synthase; Provisional
Probab=41.08 E-value=1.6e+02 Score=30.50 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=25.8
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 13 FLLVTF-PAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 13 il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
|++..+ ..-|-..=...|++.|+++|++|..+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~ 37 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPF 37 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecc
Confidence 444434 44689999999999999999999877
No 294
>PRK13059 putative lipid kinase; Reviewed
Probab=41.07 E-value=1.2e+02 Score=29.07 Aligned_cols=67 Identities=9% Similarity=0.026 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhh
Q 041902 295 RQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLES 374 (470)
Q Consensus 295 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~ea 374 (470)
..++.+...+...+.++....... . . . .... ....-..+++ +|.-||=||+.|+
T Consensus 19 ~~~~~i~~~l~~~g~~~~~~~~~~-~-~------~-~~~~---------------~~~~~~~~d~--vi~~GGDGTv~ev 72 (295)
T PRK13059 19 SELDKVIRIHQEKGYLVVPYRISL-E-Y------D-LKNA---------------FKDIDESYKY--ILIAGGDGTVDNV 72 (295)
T ss_pred HHHHHHHHHHHHCCcEEEEEEccC-c-c------h-HHHH---------------HHHhhcCCCE--EEEECCccHHHHH
Confidence 456678888888887765543332 1 1 1 1111 0111123455 9999999998887
Q ss_pred h---h---cCCcEeecccc
Q 041902 375 L---V---CGVPVVAFPQW 387 (470)
Q Consensus 375 l---~---~GvP~v~~P~~ 387 (470)
+ . .++|+-++|..
T Consensus 73 v~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 73 VNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred HHHHHhcCCCCcEEEECCC
Confidence 4 2 35899999964
No 295
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=40.67 E-value=84 Score=32.55 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=34.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
|+=+|++..- =.-++.+|+.|.+.|+++. .+....+.+ +. .|+.+..+.
T Consensus 4 ~~~aLISVsD---K~~iv~lAk~L~~lGfeI~--AT~GTak~L-~e----~GI~v~~V~ 52 (513)
T PRK00881 4 IKRALISVSD---KTGIVEFAKALVELGVEIL--STGGTAKLL-AE----AGIPVTEVS 52 (513)
T ss_pred cCEEEEEEeC---cccHHHHHHHHHHCCCEEE--EcchHHHHH-HH----CCCeeEEee
Confidence 3334444443 3448899999999999984 567777777 66 788887774
No 296
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=40.45 E-value=50 Score=31.62 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=32.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
|||.|.-=|+-|-..-.+.||..|+++|++|.++=-
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 788888889999999999999999999999998843
No 297
>PRK12342 hypothetical protein; Provisional
Probab=40.34 E-value=58 Score=30.52 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=23.8
Q ss_pred CccEEEeCCCch------hHHHHHHHcCCCeEEEec
Q 041902 112 PFTCLVYSLLLP------WTAEVARAYHLPSALLWI 141 (470)
Q Consensus 112 ~pDlvv~d~~~~------~~~~~A~~~giP~i~~~~ 141 (470)
.||+|+|...+. .+..+|+.+|+|++....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 499999964332 489999999999998654
No 298
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.10 E-value=2.5e+02 Score=26.78 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred cccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC-ccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCc
Q 041902 5 QHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT-IFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDP 83 (470)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~-~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~ 83 (470)
+...++|||.|+..+ .||-.-.+--+.+-.+.+++|.++.+ ......++++ .|+.++.++.....
T Consensus 84 ~~~~~~~ri~vl~Sg-~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~----~gIp~~~~~~~~~~--------- 149 (286)
T PRK13011 84 HDPAARPKVLIMVSK-FDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAW----HGIPFHHFPITPDT--------- 149 (286)
T ss_pred eecccCceEEEEEcC-CcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHH----hCCCEEEeCCCcCc---------
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc-hhHHHHHHHcCCCeEEEech
Q 041902 84 RRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL-PWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~-~~~~~~A~~~giP~i~~~~~ 142 (470)
....-.++++.+++ .++|+||.-.+. .....+-+.+.-..+-++++
T Consensus 150 ----------~~~~~~~~~~~l~~---~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK13011 150 ----------KPQQEAQVLDVVEE---SGAELVVLARYMQVLSPELCRKLAGRAINIHHS 196 (286)
T ss_pred ----------hhhhHHHHHHHHHH---hCcCEEEEeChhhhCCHHHHhhccCCeEEeccc
No 299
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=40.03 E-value=1.3e+02 Score=28.12 Aligned_cols=40 Identities=18% Similarity=0.047 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
+..-+++.-.|+.|-..=++.++...+.+|..|.|++.+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3445566666899999999999999888999999999874
No 300
>PRK06270 homoserine dehydrogenase; Provisional
Probab=39.62 E-value=1.5e+02 Score=29.08 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=36.0
Q ss_pred Chhhhcccccccccee------ccC---chhhhhhhhcCCcEee---ccccchhhHHHHHHHhhhcceeEee
Q 041902 349 SQVEVLSHEAVGCFVT------HCG---WNSSLESLVCGVPVVA---FPQWTDQGTNAKIIVDFCKTGVRVK 408 (470)
Q Consensus 349 p~~~vl~~~~v~~~It------HGG---~gt~~eal~~GvP~v~---~P~~~DQ~~nA~rl~~~~GvG~~l~ 408 (470)
...+++..++++.+|- |+| ..-+.+||.+|+++|+ -|+...-..-.+...+ .|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 5566675554444665 443 4456899999999999 4765433333344444 67766654
No 301
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=39.49 E-value=3.4e+02 Score=25.69 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=56.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHH
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKR 92 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (470)
|++.-.|+.|-..-.-.|++.|.+.|.+|.++...... + +. .. |. . ..--...+.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~-~~----~~--y~-------~---------~~~Ek~~R~ 58 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--I-DR----ND--YA-------D---------SKKEKEARG 58 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH----TT----SS--S------------------GGGHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--c-ch----hh--hh-------c---------hhhhHHHHH
Confidence 34445599999999999999999999999998744433 3 22 00 00 0 111112222
Q ss_pred HhHHHHHHHHHhhhhcCCCCccEEEeCCCch------hHHHHHHHcCCCeEEEechhhHHHHHHH
Q 041902 93 RSSEALTEIITGSENQGAQPFTCLVYSLLLP------WTAEVARAYHLPSALLWIQPALVFDVYY 151 (470)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~------~~~~~A~~~giP~i~~~~~~~~~~~~~~ 151 (470)
.....+...+ .+-++||+|...+ ....+|+..+.++++++.......+...
T Consensus 59 ~l~s~v~r~l--------s~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~ 115 (270)
T PF08433_consen 59 SLKSAVERAL--------SKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQR 115 (270)
T ss_dssp HHHHHHHHHH--------TT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHH
T ss_pred HHHHHHHHhh--------ccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHh
Confidence 2222222222 2348999997653 4577899999999998876554444333
No 302
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=39.35 E-value=61 Score=27.57 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=49.7
Q ss_pred ccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 041902 384 FPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFV 463 (470)
Q Consensus 384 ~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (470)
.|+...+-.+|+.+.+ .--++. .-..+.|.+.+..++.++|.-+-.+.+++..+.++ |......+.+++
T Consensus 78 yPWt~~~L~aa~el~e-e~eeLs-------~deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~---g~~v~~~~~dIl 146 (158)
T PF10083_consen 78 YPWTENALEAANELIE-EDEELS-------PDEKEQFKESLPDLTKDTPKTKVAATRFKKILSKA---GSIVGDAIRDIL 146 (158)
T ss_pred CchHHHHHHHHHHHHH-HhhcCC-------HHHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHH---hHHHHHHHHHHH
Confidence 6888899999998886 222211 12357889999999987778888889999998886 333344444444
Q ss_pred HH
Q 041902 464 DD 465 (470)
Q Consensus 464 ~~ 465 (470)
-+
T Consensus 147 Vd 148 (158)
T PF10083_consen 147 VD 148 (158)
T ss_pred HH
Confidence 33
No 303
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=39.34 E-value=1e+02 Score=28.30 Aligned_cols=100 Identities=16% Similarity=0.101 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCccC--H--HHHHHHHHHHHhCCCeEEEEeCccc--hhhhcCCCCCCCCce--EEEcCCCCCCCCCCCC
Q 041902 9 HQPHFLLVTFPAQGH--I--NPALQLARRLIRIGTRVTFATTIFA--YRRMANSPTPEDGLS--FASFSDGYDDGFNSKQ 80 (470)
Q Consensus 9 ~~~~il~~~~~~~GH--~--~P~l~la~~L~~~Gh~V~~~~~~~~--~~~v~~~~~~~~g~~--~~~i~~~~~~~~~~~~ 80 (470)
.+..|+|.++.+... + .-+..|++.|.++|.+|.+++++.. .+.+ +... .+.. .+.+...
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~-~~~~--~~~~~~~~~~~~~--------- 171 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIA-DQIA--AGLQNPVINLAGK--------- 171 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHH-HHHH--TTHTTTTEEETTT---------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHH-HHHH--HhcccceEeecCC---------
Confidence 344667766655422 2 2268999999999999988887766 2222 1110 1111 1111110
Q ss_pred CCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEech
Q 041902 81 NDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~ 142 (470)
. ....+..++. .-|++|+.. .+..++|..+|+|.+.++..
T Consensus 172 -~-----------~l~e~~ali~--------~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~ 211 (247)
T PF01075_consen 172 -T-----------SLRELAALIS--------RADLVIGND--TGPMHLAAALGTPTVALFGP 211 (247)
T ss_dssp -S------------HHHHHHHHH--------TSSEEEEES--SHHHHHHHHTT--EEEEESS
T ss_pred -C-----------CHHHHHHHHh--------cCCEEEecC--ChHHHHHHHHhCCEEEEecC
Confidence 0 1111223332 379999863 46899999999999998653
No 304
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=39.11 E-value=63 Score=30.30 Aligned_cols=30 Identities=10% Similarity=-0.068 Sum_probs=23.8
Q ss_pred CccEEEeCCCc------hhHHHHHHHcCCCeEEEec
Q 041902 112 PFTCLVYSLLL------PWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 112 ~pDlvv~d~~~------~~~~~~A~~~giP~i~~~~ 141 (470)
.||||+|...+ ..+..+|+.+|+|++....
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 49999996433 2578999999999998654
No 305
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=39.09 E-value=2.9e+02 Score=24.83 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=75.1
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHH-hCCCeEEeeccChhhhccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEE-LNEKGMIVPWCSQVEVLSH 356 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~nv~v~~~vp~~~vl~~ 356 (470)
+++++.|..|.++ ..-+..|...|+.+.++.+.- . +++.+. -..++..+.--.....+..
T Consensus 9 gk~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-~-----------~~l~~l~~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 9 GRAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-E-----------SELTLLAEQGGITWLARCFDADILEG 69 (205)
T ss_pred CCeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-C-----------HHHHHHHHcCCEEEEeCCCCHHHhCC
Confidence 4568888888766 233556667888776654422 1 122111 1235555422222344666
Q ss_pred cccccceeccCchhhh-----hhhhcCCcEeec--cccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 357 EAVGCFVTHCGWNSSL-----ESLVCGVPVVAF--PQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~-----eal~~GvP~v~~--P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
+++ +|..-|...+. +|-..|+|+-++ |-..|= ..-..+.+ =++-+.+.++.....-...|++.|++.+.
T Consensus 70 ~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f-~~pa~~~~-g~l~iaisT~G~sP~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 70 AFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCSF-IFPSIVDR-SPVVVAISSGGAAPVLARLLRERIETLLP 145 (205)
T ss_pred cEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeE-EEeeEEEc-CCEEEEEECCCCCcHHHHHHHHHHHHhcc
Confidence 666 88888876443 344568888333 222221 11122222 23444444422233345678888888876
Q ss_pred C-CHHHHHHHHHHHHHHHH
Q 041902 430 E-GDEFRGNSLKWKDLARE 447 (470)
Q Consensus 430 ~-~~~~r~~a~~~~~~~~~ 447 (470)
+ ...+.+-..++++.+.+
T Consensus 146 ~~~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 146 PSLGDLATLAATWRDAVKK 164 (205)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 1 12455555566665554
No 306
>PLN02929 NADH kinase
Probab=38.92 E-value=42 Score=32.27 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred ccccccceeccCchhhhhhhh---cCCcEeeccccc------hhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHH
Q 041902 356 HEAVGCFVTHCGWNSSLESLV---CGVPVVAFPQWT------DQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLEL 426 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt~~eal~---~GvP~v~~P~~~------DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~ 426 (470)
.+++ +|+-||-||++.|.+ .++|++.+=... .+.+|... +. .-+|.... ++.+++.+.+++
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~~ 133 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLDD 133 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHHH
Confidence 4566 999999999999855 468888775431 22333322 11 13555443 568899999999
Q ss_pred Hhc
Q 041902 427 VMG 429 (470)
Q Consensus 427 vl~ 429 (470)
++.
T Consensus 134 il~ 136 (301)
T PLN02929 134 VLF 136 (301)
T ss_pred HHc
Confidence 998
No 307
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=38.89 E-value=60 Score=31.58 Aligned_cols=34 Identities=12% Similarity=-0.055 Sum_probs=24.5
Q ss_pred CCccEEEe-CCCc-hhHHHHHHHcCCCeEEEechhh
Q 041902 111 QPFTCLVY-SLLL-PWTAEVARAYHLPSALLWIQPA 144 (470)
Q Consensus 111 ~~pDlvv~-d~~~-~~~~~~A~~~giP~i~~~~~~~ 144 (470)
..||+||. |..- ..+..=|.++|||+|.+.-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 36999866 4332 4567778899999999876544
No 308
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=38.83 E-value=1.6e+02 Score=29.96 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHH
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSE 89 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 89 (470)
..|+.+...+ ...+.+++.|.+-|-+|..+......+.. +. ++.. .. ....
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~-~~-----------~~~~---------~~---~~~D 361 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLL-QK-----------LPVE---------TV---VIGD 361 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHH-Hh-----------CCcC---------cE---EeCC
Confidence 3566665422 46688888888899998887665543333 21 0000 00 0000
Q ss_pred HHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEE
Q 041902 90 FKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALL 139 (470)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~ 139 (470)
. ..+.++++. .++|+||... .+..+|+++|||++.+
T Consensus 362 ~-----~~l~~~i~~------~~~dliig~s---~~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 362 L-----EDLEDLACA------AGADLLITNS---HGRALAQRLALPLVRA 397 (432)
T ss_pred H-----HHHHHHHhh------cCCCEEEECc---chHHHHHHcCCCEEEe
Confidence 0 111233322 4699999985 3588999999999986
No 309
>PRK06321 replicative DNA helicase; Provisional
Probab=38.68 E-value=2.2e+02 Score=29.38 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCccchhhh
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIR-IGTRVTFATTIFAYRRM 53 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~-~Gh~V~~~~~~~~~~~v 53 (470)
++.-=|++...|+.|-..-.+.+|...+. .|..|.|++-+-....+
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 33334577778999999999999998874 59999999877655444
No 310
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=38.41 E-value=99 Score=27.21 Aligned_cols=101 Identities=13% Similarity=0.060 Sum_probs=54.4
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhH-HHHHHhCCCeEEe
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVM-KYKEELNEKGMIV 345 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nv~v~ 345 (470)
.++..++.+++ ..+|+-|. +......+.++....+-.++=+++.. ++. +.........+++
T Consensus 22 ~~lG~~la~~g---~~lV~GGg----~~GlM~a~a~ga~~~gG~viGi~p~~-----------l~~~~~~~~~~~~~i~~ 83 (178)
T TIGR00730 22 AELGAYLAGQG---WGLVYGGG----RVGLMGAIADAAMENGGTAVGVNPSG-----------LFSGEVVHQNLTELIEV 83 (178)
T ss_pred HHHHHHHHHCC---CEEEECCC----hHhHHHHHHHHHHhcCCeEEEecchh-----------hhhhhccCCCCCceEEE
Confidence 56667786653 34555553 22345567777777776666555432 110 0000011233344
Q ss_pred eccC-hhhhccccccccceeccCchhhhhhhh---------cCCcEeecc
Q 041902 346 PWCS-QVEVLSHEAVGCFVTHCGWNSSLESLV---------CGVPVVAFP 385 (470)
Q Consensus 346 ~~vp-~~~vl~~~~v~~~ItHGG~gt~~eal~---------~GvP~v~~P 385 (470)
.... -..+|-..+-+.++--||.||.-|.+. +.+|++++=
T Consensus 84 ~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 84 NGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred CCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 3333 233443333345777899999888732 589998874
No 311
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=38.21 E-value=1.8e+02 Score=25.88 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred CE-EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc---chhhh---cCCCCCCCCceEEEcCCC
Q 041902 11 PH-FLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF---AYRRM---ANSPTPEDGLSFASFSDG 71 (470)
Q Consensus 11 ~~-il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~---~~~~v---~~~~~~~~g~~~~~i~~~ 71 (470)
.+ |+|+..+..-|-.-+..++++|++.|..|.+++-.. ..+.+ .++...+.+-+|+.+|.+
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 45 778888878887778899999999999999997553 11111 122211156888888864
No 312
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=38.16 E-value=55 Score=29.44 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
+.||.|-..|+-|-.+-+|.=|++|+++|.+|.+..-+
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 57999999999999999999999999999999998554
No 313
>PRK13055 putative lipid kinase; Reviewed
Probab=38.14 E-value=1.5e+02 Score=29.01 Aligned_cols=83 Identities=10% Similarity=-0.035 Sum_probs=47.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccc
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVG 360 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~ 360 (470)
.+.++-.|......+.+..+...|...+..+.+..... ... ....+... ......++
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~-~~~-------~a~~~~~~--------------~~~~~~d~- 62 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTP-EPN-------SAKNEAKR--------------AAEAGFDL- 62 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeec-CCc-------cHHHHHHH--------------HhhcCCCE-
Confidence 34455555333234556778888888887766544432 111 11111101 01122455
Q ss_pred cceeccCchhhhhhhhc------CCcEeecccc
Q 041902 361 CFVTHCGWNSSLESLVC------GVPVVAFPQW 387 (470)
Q Consensus 361 ~~ItHGG~gt~~eal~~------GvP~v~~P~~ 387 (470)
+|--||=||+.|++.. .+|+-++|.+
T Consensus 63 -vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 63 -IIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred -EEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 9999999999988743 4788899964
No 314
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=37.78 E-value=23 Score=30.35 Aligned_cols=32 Identities=22% Similarity=0.097 Sum_probs=25.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
||.++-.|.+|+ ++|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 455666666664 78999999999999998874
No 315
>PRK04940 hypothetical protein; Provisional
Probab=37.63 E-value=92 Score=27.48 Aligned_cols=31 Identities=6% Similarity=-0.010 Sum_probs=25.0
Q ss_pred CccEEEeCCCc-hhHHHHHHHcCCCeEEEech
Q 041902 112 PFTCLVYSLLL-PWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 112 ~pDlvv~d~~~-~~~~~~A~~~giP~i~~~~~ 142 (470)
++++||-.++- +++..+|+++|+|.|.+.|+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46777777654 58999999999999998664
No 316
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.61 E-value=44 Score=29.21 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=21.5
Q ss_pred cccccccceeccCchhhhhhhhcCCcEeeccccc
Q 041902 355 SHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWT 388 (470)
Q Consensus 355 ~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~ 388 (470)
..+++ +|+.||......... ++|+|-++...
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 44666 999999999999887 99999999753
No 317
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=37.50 E-value=3.6e+02 Score=25.40 Aligned_cols=57 Identities=5% Similarity=0.110 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGY 72 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~ 72 (470)
.+|||+++.+++...-. ..+++|.++|.+|.++......+....- ..++.+-+|.+.
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l----~~~DgLvipGGf 58 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSV----SDYDCLVIPGGF 58 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccch----hhCCEEEECCCC
Confidence 45799999998886443 5578899999999988654321111011 467788888764
No 318
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.94 E-value=57 Score=28.63 Aligned_cols=46 Identities=24% Similarity=0.332 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+.+..++|.-.++.|-..=..++++++..+|+.|.|+..++..+.+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 3456899999999998888999999999999999999998888888
No 319
>PRK06988 putative formyltransferase; Provisional
Probab=36.70 E-value=1.6e+02 Score=28.54 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=22.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|||+|+..+.. .+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHNV-----GVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcHH-----HHHHHHHHHhCCCCEEEEEcC
Confidence 89999865543 244556677789998877654
No 320
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=36.69 E-value=40 Score=34.20 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=32.7
Q ss_pred CccccccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 041902 1 MEQEQHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA 49 (470)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~ 49 (470)
|.+....+++.||+++=.+.-| +..|+.|...+++||++...++
T Consensus 1 ~~~~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCcccCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 6777778888898888665554 4467888777899999965543
No 321
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.63 E-value=1.1e+02 Score=30.53 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=42.5
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCC---CCceEEE
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPE---DGLSFAS 67 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~---~g~~~~~ 67 (470)
++--|+|+---+.|-..-|-.+|..++++|+.+.+++.+.|+.-...++..+ .++.|+.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 3345667777888999999999999999999999999887664321221111 5677764
No 322
>PRK13057 putative lipid kinase; Reviewed
Probab=36.17 E-value=1.4e+02 Score=28.36 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhh
Q 041902 296 QVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESL 375 (470)
Q Consensus 296 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal 375 (470)
.+..+...|...+..+....... . .....+. -+ +....++ +|.-||=||+.|++
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~-~--------~~a~~~~-------------~~--~~~~~d~--iiv~GGDGTv~~v~ 67 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAED-P--------DDLSEVI-------------EA--YADGVDL--VIVGGGDGTLNAAA 67 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCC-H--------HHHHHHH-------------HH--HHcCCCE--EEEECchHHHHHHH
Confidence 46677788888887765544433 1 1111111 01 1233455 99999999988885
Q ss_pred ----hcCCcEeecccc
Q 041902 376 ----VCGVPVVAFPQW 387 (470)
Q Consensus 376 ----~~GvP~v~~P~~ 387 (470)
..++|+-++|.+
T Consensus 68 ~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 68 PALVETGLPLGILPLG 83 (287)
T ss_pred HHHhcCCCcEEEECCC
Confidence 347899999963
No 323
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=36.03 E-value=60 Score=30.45 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
|.|.|.-=|+-|...=...||..|+++|++|.++=
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 67888866899999999999999999999999883
No 324
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.92 E-value=84 Score=29.47 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=36.1
Q ss_pred ccccccceeccCchhhhhhhh-cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 356 HEAVGCFVTHCGWNSSLESLV-CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt~~eal~-~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
.+++ +|+=||-||++.|++ .++|++.+-.. .+|.. ..++.+++.+.+.++++
T Consensus 41 ~~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl------~~~~~~~~~~~l~~~~~ 93 (256)
T PRK14075 41 TADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFL------SSYTLEEIDRFLEDLKN 93 (256)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCccc------cccCHHHHHHHHHHHHc
Confidence 3566 999999999999977 57777665311 12222 24567888888888877
No 325
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=35.86 E-value=61 Score=30.39 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=30.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
|+|.+.-=|+-|-..=++.||..|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 6788886688899999999999999999999988
No 326
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=35.79 E-value=2.1e+02 Score=28.76 Aligned_cols=97 Identities=15% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCC-CeEEe-eccChhhhc
Q 041902 277 PKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNE-KGMIV-PWCSQVEVL 354 (470)
Q Consensus 277 ~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-nv~v~-~~vp~~~vl 354 (470)
.+||+|-+|+ ......-...+...|++.|+++++..-++ ..+ ..+++-+.+ .+--+ +.-.+.. -
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG-~GG---------~aME~Li~~G~~~~VlDlTttEl-~ 248 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATG-TGG---------RAMERLIREGQFDGVLDLTTTEL-A 248 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCC-Cch---------HHHHHHHHcCCcEEEEECcHHHH-H
Confidence 4667787764 33344667888999999999988876666 222 122222222 22222 4444422 1
Q ss_pred cccccccceeccCchhhhhhhhcCCcEeeccccch
Q 041902 355 SHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTD 389 (470)
Q Consensus 355 ~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~D 389 (470)
.-+-+-|..+|-.=.-.|...|+|||+.|-..|
T Consensus 249 --d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 249 --DELFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred --HHHhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 111123677788888899999999999996444
No 327
>PRK04328 hypothetical protein; Provisional
Probab=35.75 E-value=2.4e+02 Score=26.14 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
.+.--+++.-.|+.|-..=.+.++.+-.++|+.+.|++.+...+.+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i 66 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQV 66 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHH
Confidence 3445566677788999888888888777889999999987655543
No 328
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=35.64 E-value=2.2e+02 Score=28.48 Aligned_cols=61 Identities=30% Similarity=0.370 Sum_probs=39.9
Q ss_pred ceeccCchhhhhhhhcCCcEeeccc---cc------hhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhcCCH
Q 041902 362 FVTHCGWNSSLESLVCGVPVVAFPQ---WT------DQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMGEGD 432 (470)
Q Consensus 362 ~ItHGG~gt~~eal~~GvP~v~~P~---~~------DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~~~~ 432 (470)
+-|+ |..++..||.+|.|+ .+|. .. -=..|+.++.+ +.=...- ..+.+++..+|.++++ +.
T Consensus 248 VEt~-~a~~f~~sl~~g~~V-~lp~i~s~AdglaV~~Vg~~tf~~a~--~~~d~vv-----vV~~~ei~aaI~~l~e-de 317 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPV-TLPKITSLADGLAVKTVGENTFELAQ--KLVDRVV-----VVEDDEIAAAILRLFE-DE 317 (457)
T ss_pred Eeec-CcHHHHHHHhcCCee-ecccccchhcccccchhhHHHHHHHH--hcCceEE-----EeccHHHHHHHHHHHH-hh
Confidence 4555 568888899999887 3332 12 23456777775 3333332 3688999999999998 44
No 329
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.52 E-value=60 Score=31.13 Aligned_cols=56 Identities=13% Similarity=0.289 Sum_probs=39.3
Q ss_pred hhccccccccceeccCchhhhhhhh----cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHH
Q 041902 352 EVLSHEAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELV 427 (470)
Q Consensus 352 ~vl~~~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~v 427 (470)
.+...+++ +|+=||-||++.|.+ .++|++.+-.+ .+|-. ..++.+++.++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL------t~~~~~~~~~~l~~i 117 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFL------ATVSKEEIEETIDEL 117 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCcc------cccCHHHHHHHHHHH
Confidence 33345677 999999999999977 37888777321 02221 246778888888888
Q ss_pred hc
Q 041902 428 MG 429 (470)
Q Consensus 428 l~ 429 (470)
++
T Consensus 118 ~~ 119 (292)
T PRK01911 118 LN 119 (292)
T ss_pred Hc
Confidence 88
No 330
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=35.38 E-value=2.9e+02 Score=23.80 Aligned_cols=120 Identities=15% Similarity=0.019 Sum_probs=62.2
Q ss_pred EEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCC-CCCCCCCCchhhHHHHHH
Q 041902 15 LVTFPAQGHINPAL-QLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDD-GFNSKQNDPRRYVSEFKR 92 (470)
Q Consensus 15 ~~~~~~~GH~~P~l-~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~ 92 (470)
-+.+...+....+| .+|.+|+.+|++|.=++..+....-... .......++++-.- ...+.+.. ..-+..--.
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~----~~m~l~dl~~G~~~~IsQ~LG~g-s~gCrLD~~ 77 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGR----CDMDLRDLPSGRRIRISQDLGPG-SRGCRLDPG 77 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCc----cceEEEECCCCCEEEEeeccCCC-CcccccCHH
Confidence 34455567777755 7899999999999888765533322111 34555555543111 00001110 111111111
Q ss_pred HhHHHHHHHHHhhhhcCCCCccEEEeCCCch---------hHHHHHHHcCCCeEEEechh
Q 041902 93 RSSEALTEIITGSENQGAQPFTCLVYSLLLP---------WTAEVARAYHLPSALLWIQP 143 (470)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~---------~~~~~A~~~giP~i~~~~~~ 143 (470)
.+......+.+.+. .++|++|..-|.- .....|-..|||+++..+..
T Consensus 78 ~La~A~~~l~~al~----~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~ 133 (159)
T PF10649_consen 78 ALAEASAALRRALA----EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPR 133 (159)
T ss_pred HHHHHHHHHHHHHh----cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHH
Confidence 22222223333333 4599999984431 12333567999999876543
No 331
>PRK09165 replicative DNA helicase; Provisional
Probab=35.10 E-value=1.7e+02 Score=30.54 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCccchhhh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRI---------------GTRVTFATTIFAYRRM 53 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~---------------Gh~V~~~~~~~~~~~v 53 (470)
..+.-=+++...|+.|-..-.+.+|...+.+ |..|.|++.+.....+
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 3444456777889999999999998888753 7899999887666544
No 332
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=34.99 E-value=4.1e+02 Score=25.40 Aligned_cols=40 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
+...|.|.-.++.|-..=+..++..|..+|+.|.++..+.
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~ 72 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDP 72 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3345555555888999999999999999999999987664
No 333
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=34.77 E-value=51 Score=26.67 Aligned_cols=30 Identities=7% Similarity=0.140 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 24 INPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 24 ~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+.|++.|.-.+.-+||+++++-+..+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 568888898999999999999999999887
No 334
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.70 E-value=3.1e+02 Score=24.55 Aligned_cols=52 Identities=4% Similarity=0.057 Sum_probs=31.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCcc----chhhhcCCCCCCCCceEEEcCC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIG--TRVTFATTIF----AYRRMANSPTPEDGLSFASFSD 70 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~G--h~V~~~~~~~----~~~~v~~~~~~~~g~~~~~i~~ 70 (470)
|||++++.+..+-+. ++.+++.+.+ ++|.++.+.. ..+.. +. .|+.+..++.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a-~~----~gIp~~~~~~ 59 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPDAYGLERA-EA----AGIPTFVLDH 59 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCccchHHHHH-HH----cCCCEEEECc
Confidence 789888887744444 4455566654 7888764442 22333 44 6888877653
No 335
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=4.6e+02 Score=25.89 Aligned_cols=124 Identities=10% Similarity=-0.021 Sum_probs=76.7
Q ss_pred ccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc---hhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCC
Q 041902 6 HRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA---YRRMANSPTPEDGLSFASFSDGYDDGFNSKQND 82 (470)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~---~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 82 (470)
.+.++.|++++.-|--||--++--=|..|++.|++|.+++.-.. .+.+ +. ++++++.++.- +... .....
T Consensus 8 ~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~-~h----prI~ih~m~~l-~~~~-~~p~~ 80 (444)
T KOG2941|consen 8 NKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL-NH----PRIRIHGMPNL-PFLQ-GGPRV 80 (444)
T ss_pred cccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh-cC----CceEEEeCCCC-cccC-CCchh
Confidence 45567799999999999998888889999999999999975433 3444 66 88999999742 2111 11112
Q ss_pred chhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCC-CchhH----HHHHHHcCCCeEEEechh
Q 041902 83 PRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSL-LLPWT----AEVARAYHLPSALLWIQP 143 (470)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~-~~~~~----~~~A~~~giP~i~~~~~~ 143 (470)
....++.+... ...+..+.. + .++|+|+.-+ -+... ....-..|-.+++=|.-.
T Consensus 81 ~~l~lKvf~Qf-l~Ll~aL~~-~-----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy 139 (444)
T KOG2941|consen 81 LFLPLKVFWQF-LSLLWALFV-L-----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNY 139 (444)
T ss_pred hhhHHHHHHHH-HHHHHHHHh-c-----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhh
Confidence 12223333332 223333333 2 5689997753 33323 333345677777766543
No 336
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=34.62 E-value=1.3e+02 Score=29.41 Aligned_cols=103 Identities=17% Similarity=0.070 Sum_probs=56.9
Q ss_pred CEEEEEcCCCcc---CH--HHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 11 PHFLLVTFPAQG---HI--NPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 11 ~~il~~~~~~~G---H~--~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
.-|+|.|+.+.| ++ .-+..|++.|.+.|++|.+++++.-.+.. +.+. .. .+........ +
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~-~~i~--~~-----~~~~~~~~~~---~---- 245 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAG-NEIL--AA-----LNTEQQAWCR---N---- 245 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHH-HHHH--Hh-----ccccccccee---e----
Confidence 346666644323 22 34789999999889999999887655444 2210 00 0100000000 0
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
+ ..... +.++...+ .+-|++|+.. .+..++|..+|+|++.++.
T Consensus 246 l---~g~~s---L~el~ali-----~~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 246 L---AGETQ---LEQAVILI-----AACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred c---cCCCC---HHHHHHHH-----HhCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 0 00001 22222323 2379999973 4689999999999998864
No 337
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.60 E-value=57 Score=31.49 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=37.8
Q ss_pred cccccccceeccCchhhhhhhhc----CCcEeeccccchhhHHHHHHHhhhc-ceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 355 SHEAVGCFVTHCGWNSSLESLVC----GVPVVAFPQWTDQGTNAKIIVDFCK-TGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 355 ~~~~v~~~ItHGG~gt~~eal~~----GvP~v~~P~~~DQ~~nA~rl~~~~G-vG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..+++ +|+=||-||++.|.+. ++|++.+- .| +|-. .+++.+++.+++.+++.
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN---------------~G~lGFL------t~~~~~~~~~~l~~l~~ 123 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTIN---------------TGHLGFL------TEAYLNQLDEAIDQVLA 123 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEe---------------CCCCccc------ccCCHHHHHHHHHHHHc
Confidence 34566 9999999999999774 78887773 22 1211 24567888889999887
No 338
>PF01924 HypD: Hydrogenase formation hypA family; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes []. This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas [].; GO: 0046872 metal ion binding; PDB: 2Z1D_A.
Probab=34.59 E-value=98 Score=30.32 Aligned_cols=115 Identities=10% Similarity=0.068 Sum_probs=58.4
Q ss_pred hhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEe
Q 041902 266 KEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIV 345 (470)
Q Consensus 266 ~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~ 345 (470)
|-+-.+....++++.|||++-|=..+ .+.....+..+.+.--.+|-+..... -.|+.+
T Consensus 113 p~dAl~iA~~nP~k~vVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~~hk----------~~ppal----------- 170 (355)
T PF01924_consen 113 PLDALKIAKENPDKEVVFFAVGFETT-APATAAAILQAKEEGIKNFSVLSSHK----------LTPPAL----------- 170 (355)
T ss_dssp HHHHHHHHHH-TTSEEEEEEEE-HHH-HHHHHHHHHHHHHHT-SSEEEEEEEE-----------CHHHH-----------
T ss_pred HHHHHHHHHhCCCCceEEEEeCcccC-cHHHHHHHHHHHHcCCCCEEEEEecc----------ccHHHH-----------
Confidence 35566667778889999999885442 12233445555544334554433322 334333
Q ss_pred eccChhhhccc--cccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHH
Q 041902 346 PWCSQVEVLSH--EAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRC 423 (470)
Q Consensus 346 ~~vp~~~vl~~--~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~ 423 (470)
..+|.. ..+++||.-|-..|+.-+ ..+....++ .|+-..+. .|++.+|..+
T Consensus 171 -----~~ll~~~~~~idGfi~PGHVs~I~G~----------------~~y~~l~~~-y~~P~vIa-----GFEp~diL~a 223 (355)
T PF01924_consen 171 -----EALLEDPELKIDGFICPGHVSTIIGS----------------EPYEFLAEE-YGIPCVIA-----GFEPLDILQA 223 (355)
T ss_dssp -----HHHHHTT----SEEEEEHHHHHHHCC----------------HHHHHHHHC-C---EEEE------SSHHHHHHH
T ss_pred -----HHHHcCCCCCccEEEeCCeeeEEecc----------------hhhHHHHHH-cCCCeEEc-----CCCHHHHHHH
Confidence 223332 356678887766555432 122333444 56666665 4788888888
Q ss_pred HHHHhc
Q 041902 424 LELVMG 429 (470)
Q Consensus 424 i~~vl~ 429 (470)
|..++.
T Consensus 224 i~~lv~ 229 (355)
T PF01924_consen 224 IYMLVK 229 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777765
No 339
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=34.52 E-value=63 Score=29.25 Aligned_cols=43 Identities=14% Similarity=0.016 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
.++||++..+|+- -.+-...|.+.|+ +||+|.++.++...+.+
T Consensus 18 ~~k~IllgVtGSI-AAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI 60 (209)
T PLN02496 18 RKPRILLAASGSV-AAIKFGNLCHCFS-EWAEVRAVVTKASLHFI 60 (209)
T ss_pred CCCEEEEEEeCHH-HHHHHHHHHHHhc-CCCeEEEEEChhHhhhc
Confidence 3568888877754 3556677999998 59999999999988888
No 340
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=34.09 E-value=2.7e+02 Score=23.86 Aligned_cols=31 Identities=6% Similarity=-0.151 Sum_probs=23.9
Q ss_pred CCccEEEeCCCch---hHHHHHHHcCCCeEEEec
Q 041902 111 QPFTCLVYSLLLP---WTAEVARAYHLPSALLWI 141 (470)
Q Consensus 111 ~~pDlvv~d~~~~---~~~~~A~~~giP~i~~~~ 141 (470)
.+||+|++..... .+..+|..+|.|++.-.+
T Consensus 82 ~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~ 115 (168)
T cd01715 82 EKPSHILAGATSFGKDLAPRVAAKLDVGLISDVT 115 (168)
T ss_pred cCCCEEEECCCccccchHHHHHHHhCCCceeeEE
Confidence 3599999975443 578899999999997443
No 341
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.99 E-value=66 Score=30.94 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=39.3
Q ss_pred hhccccccccceeccCchhhhhhhh----cCCcEeeccccchhhHHHHHHHhhhc-ceeEeeecCCCCcCHHHHHHHHHH
Q 041902 352 EVLSHEAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNAKIIVDFCK-TGVRVKANEEGILESDEIKRCLEL 426 (470)
Q Consensus 352 ~vl~~~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA~rl~~~~G-vG~~l~~~~~~~~~~~~l~~~i~~ 426 (470)
.+...+++ +|+=||-||++.|.+ .++|++.+- .| +|-.- .++.+++.+++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN---------------~G~lGFL~------~~~~~~~~~~l~~ 120 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGIN---------------QGHLGFLT------QIPREYMTDKLLP 120 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEe---------------cCCCeEee------ccCHHHHHHHHHH
Confidence 33335677 999999999999975 378887773 22 23222 4677888899999
Q ss_pred Hhc
Q 041902 427 VMG 429 (470)
Q Consensus 427 vl~ 429 (470)
+++
T Consensus 121 i~~ 123 (296)
T PRK04539 121 VLE 123 (296)
T ss_pred HHc
Confidence 887
No 342
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=33.95 E-value=1.8e+02 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRI 37 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~ 37 (470)
=+++-.|+.||..=++.|-+.|.++
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhh
Confidence 3566678999999999999999776
No 343
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=33.93 E-value=77 Score=25.41 Aligned_cols=36 Identities=19% Similarity=-0.106 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
++..+.++..|-....-++..|.++|++|.+.....
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCC
Confidence 577888899999999999999999999999996543
No 344
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=33.93 E-value=2.7e+02 Score=28.92 Aligned_cols=47 Identities=6% Similarity=-0.073 Sum_probs=39.2
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
..+..-+++.-.|+.|-..=.+.++.+.+++|.+|.+++.+...+.+
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i 306 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQL 306 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHH
Confidence 34455677777799999999999999999999999999988766655
No 345
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=33.70 E-value=79 Score=30.78 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=29.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 16 VTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 16 ~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
++.|+.|-.-=.+.||++|++||..+.+++-.+-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 46699999999999999999999999999655433
No 346
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=33.66 E-value=28 Score=30.02 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc--chhhhcCCCCCCCCceEEEcCC
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF--AYRRMANSPTPEDGLSFASFSD 70 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~--~~~~v~~~~~~~~g~~~~~i~~ 70 (470)
..+|.++-++++||. -|.-|++.|++|++...+. ..++. ++ .||+..++.+
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A-~~----~Gf~v~~~~e 56 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKA-KA----DGFEVMSVAE 56 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHH-HH----TT-ECCEHHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHH-HH----CCCeeccHHH
Confidence 468999999999985 4778999999999997654 45566 66 8998877753
No 347
>PRK05636 replicative DNA helicase; Provisional
Probab=33.57 E-value=1.3e+02 Score=31.38 Aligned_cols=47 Identities=11% Similarity=0.128 Sum_probs=35.3
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCccchhhh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLI-RIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~-~~Gh~V~~~~~~~~~~~v 53 (470)
..+.-=|++...|+.|-..=.+.+|...+ +.|..|.|++.+-....+
T Consensus 262 l~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 262 LRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 34444567788899999999999998876 458999999877655443
No 348
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=33.41 E-value=48 Score=32.40 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=29.7
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
|||.|+-.|..|. .+|..|.++||+|+++......+.+
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~~~~~~ 40 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRARIGDEL 40 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHHHHHHH
Confidence 7899887777763 5788899999999999876544555
No 349
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=32.95 E-value=63 Score=28.23 Aligned_cols=30 Identities=3% Similarity=-0.129 Sum_probs=20.6
Q ss_pred CCccEEEeCCCchh--HHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPW--TAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~--~~~~A~~~giP~i~~~ 140 (470)
.+||+||+...+.. ....-+..|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 56999998654432 3344567999998863
No 350
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=32.88 E-value=51 Score=29.83 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=29.0
Q ss_pred CEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 11 PHFLLV-TFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 11 ~~il~~-~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
|.++++ -.|+.|-..-.-.||++|..++|+|...+.
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 344444 459999999999999999999999876643
No 351
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.73 E-value=3.7e+02 Score=26.11 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccch
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAY 50 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~ 50 (470)
+-.|+|+-.++-|-..=+..||..|+.+|++|.++..+.+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 34566776788899999999999999999999999877543
No 352
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=32.49 E-value=1.8e+02 Score=30.07 Aligned_cols=93 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred CccccccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCC
Q 041902 1 MEQEQHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQ 80 (470)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~ 80 (470)
|+.-...-...++.++..+ ...+.+++.|.+.|-+|..+........-
T Consensus 315 l~~~~~~l~Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~--------------------------- 362 (475)
T PRK14478 315 LEPYRPRLEGKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDED--------------------------- 362 (475)
T ss_pred HHHHHHHhCCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHH---------------------------
Q ss_pred CCchhhHHHHHH--------HhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeE
Q 041902 81 NDPRRYVSEFKR--------RSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSA 137 (470)
Q Consensus 81 ~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i 137 (470)
...+..... .....+.+.++. .+||++|.. .....+|+++|||++
T Consensus 363 ---~~~l~~~~~~~~~v~~d~~~~e~~~~i~~------~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 363 ---KERIKELMGPDAHMIDDANPRELYKMLKE------AKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred ---HHHHHHHcCCCcEEEeCCCHHHHHHHHhh------cCCCEEEec---CchhhhhhhcCCCEE
No 353
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=32.43 E-value=3.2e+02 Score=28.02 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=59.4
Q ss_pred EEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc-cchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHH
Q 041902 13 FLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI-FAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEF 90 (470)
Q Consensus 13 il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~-~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 90 (470)
|++..+ ..-|-..=.+.|++.|+++|++|..+=+. +..+ +.+ +..-.+.+. .+. ..++
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~D---------~~~--~~~~~g~~~-----~~l-d~~~--- 61 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYID---------PMF--HTQATGRPS-----RNL-DSFF--- 61 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCCC---------HHH--HHHHhCCch-----hhC-Cccc---
Confidence 444434 44688899999999999999999998331 1110 000 000001000 000 0011
Q ss_pred HHHhHHHHHHHHHhhhhcCCCCccEEEeCCC-------c-----hhHHHHHHHcCCCeEEEechhh
Q 041902 91 KRRSSEALTEIITGSENQGAQPFTCLVYSLL-------L-----PWTAEVARAYHLPSALLWIQPA 144 (470)
Q Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~-------~-----~~~~~~A~~~giP~i~~~~~~~ 144 (470)
...+.+.+.+..+. .+.|++|++.. . .....+|+.++.|++.+.....
T Consensus 62 --~~~~~i~~~~~~~~----~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~ 121 (449)
T TIGR00379 62 --MSEAQIQECFHRHS----KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQR 121 (449)
T ss_pred --CCHHHHHHHHHHhc----ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCch
Confidence 11333444444443 34799997754 1 1367999999999999986553
No 354
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=32.33 E-value=1.1e+02 Score=29.26 Aligned_cols=82 Identities=11% Similarity=0.048 Sum_probs=44.8
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccc
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVG 360 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~ 360 (470)
.++++.-|......+.+..+...+...+..+.+..... ..+ . ..+. . ...-..+++
T Consensus 5 ~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~~-~~~------~--~~~~-------------~-~~~~~~~d~- 60 (293)
T TIGR00147 5 PAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTWE-KGD------A--ARYV-------------E-EARKFGVDT- 60 (293)
T ss_pred EEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEecC-ccc------H--HHHH-------------H-HHHhcCCCE-
Confidence 34555522222233556778888888887776554443 111 1 1111 0 011123455
Q ss_pred cceeccCchhhhhhhhc-----CCcEe-ecccc
Q 041902 361 CFVTHCGWNSSLESLVC-----GVPVV-AFPQW 387 (470)
Q Consensus 361 ~~ItHGG~gt~~eal~~-----GvP~v-~~P~~ 387 (470)
+|.-||=||+.|++.. ..|.+ ++|..
T Consensus 61 -ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~G 92 (293)
T TIGR00147 61 -VIAGGGDGTINEVVNALIQLDDIPALGILPLG 92 (293)
T ss_pred -EEEECCCChHHHHHHHHhcCCCCCcEEEEcCc
Confidence 9999999999996643 34444 58963
No 355
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=32.12 E-value=2.4e+02 Score=29.60 Aligned_cols=111 Identities=17% Similarity=0.148 Sum_probs=64.9
Q ss_pred ccCHHHHHHHH-HHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC-CCC--------CCCCC------CCCCc-
Q 041902 21 QGHINPALQLA-RRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD-GYD--------DGFNS------KQNDP- 83 (470)
Q Consensus 21 ~GH~~P~l~la-~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~-~~~--------~~~~~------~~~~~- 83 (470)
.|++.=-+.+| +.+...|++|.+.-+. +...+.+. ..+..+.|+- +++ ..... ..+..
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~-ta~~i~~~----~~iPVv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~ 110 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGS-NGAYLKSR----LSLPVIVIKPTGFDVMQALARARRIASSIGVVTHQDTPP 110 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECch-HHHHHHHh----CCCCEEEecCChhhHHHHHHHHHhcCCcEEEEecCcccH
Confidence 47777778888 4466778988877554 33333233 3456665541 110 00000 01110
Q ss_pred -hhhHHHHHH--------HhHHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEech
Q 041902 84 -RRYVSEFKR--------RSSEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 84 -~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~~ 142 (470)
...+..... .........++.+++.| .++||+|. .+..+|+++|++.+.+...
T Consensus 111 ~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~G---~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 111 ALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRARG---IGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHhCCceEEEEecCHHHHHHHHHHHHHCC---CCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 111111111 13556677888888755 99999995 3689999999999998764
No 356
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.05 E-value=1e+02 Score=30.32 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.3
Q ss_pred ccccccceeccCchh---hhhhhhcCCcEeec
Q 041902 356 HEAVGCFVTHCGWNS---SLESLVCGVPVVAF 384 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt---~~eal~~GvP~v~~ 384 (470)
+|++ +|++||+-| +..|...|+|.++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 3666 999999997 99999999999874
No 357
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=31.98 E-value=3.4e+02 Score=25.90 Aligned_cols=111 Identities=8% Similarity=0.055 Sum_probs=0.0
Q ss_pred cccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE-eCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCc
Q 041902 5 QHRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFA-TTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDP 83 (470)
Q Consensus 5 ~~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~-~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~ 83 (470)
+...++|||.|+..+. |+-.-.+-=+.+-..-+++|..+ +.......+.++ .|+.++.++.....
T Consensus 84 ~~~~~~~ri~vl~Sg~-gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~----~gIp~~~~~~~~~~--------- 149 (286)
T PRK06027 84 LDSAERKRVVILVSKE-DHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVER----FGIPFHHVPVTKET--------- 149 (286)
T ss_pred cccccCcEEEEEEcCC-CCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHH----hCCCEEEeccCccc---------
Q ss_pred hhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc-hhHHHHHHHcCCCeEEEech
Q 041902 84 RRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL-PWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~-~~~~~~A~~~giP~i~~~~~ 142 (470)
....-.++.+.+++ .+||+||.-.+. .....+-..+.-.++-++++
T Consensus 150 ----------~~~~~~~~~~~l~~---~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 150 ----------KAEAEARLLELIDE---YQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------cchhHHHHHHHHHH---hCCCEEEEecchhhcCHHHHhhccCCceecCcc
No 358
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=31.88 E-value=1.9e+02 Score=28.14 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=23.1
Q ss_pred ccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 113 FTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 113 pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
-|++|+. ..+..++|..+|+|++.++.
T Consensus 261 a~l~Vs~--DSGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 261 ARLFIGV--DSVPMHMAAALGTPLVALFG 287 (344)
T ss_pred CCEEEec--CCHHHHHHHHcCCCEEEEEC
Confidence 7999997 35689999999999998764
No 359
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.84 E-value=70 Score=30.93 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=38.8
Q ss_pred ccccccccceeccCchhhhhhhhc----CCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 354 LSHEAVGCFVTHCGWNSSLESLVC----GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 354 l~~~~v~~~ItHGG~gt~~eal~~----GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
...+++ +|+=||-||++.|.+. ++|++.+..+ .+|... ++..+++.+++++++.
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~------~~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA------EAEAEDLDEAVERVVD 127 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec------cCCHHHHHHHHHHHHc
Confidence 345666 9999999999998764 7888877421 123322 3567888888888888
No 360
>CHL00194 ycf39 Ycf39; Provisional
Probab=31.84 E-value=1.1e+02 Score=29.56 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=24.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|+|++ +|+.|.+-. .|+++|.++||+|+.++-.
T Consensus 1 MkIlV--tGatG~iG~--~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLV--IGATGTLGR--QIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEE--ECCCcHHHH--HHHHHHHHCCCeEEEEEcC
Confidence 56655 477776654 4677899999999998754
No 361
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=31.81 E-value=1.9e+02 Score=31.33 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=20.5
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
|||+|+..+..+ .|+| ++|.+.||+|..+.
T Consensus 1 mkivf~g~~~~a--~~~l---~~L~~~~~~i~~V~ 30 (660)
T PRK08125 1 MKAVVFAYHDIG--CVGI---EALLAAGYEIAAVF 30 (660)
T ss_pred CeEEEECCCHHH--HHHH---HHHHHCCCcEEEEE
Confidence 789998654433 3444 77788999999443
No 362
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=31.80 E-value=52 Score=31.76 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
+-+|||.|+-.|..|. ++|+.|.+.||+|++....
T Consensus 2 ~~~m~I~iiG~G~~G~-----~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 2 TQPKTIAILGAGAWGS-----TLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCCEEEEECccHHHH-----HHHHHHHHCCCEEEEEeCC
Confidence 3468999997776664 6899999999999988654
No 363
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=31.75 E-value=87 Score=32.32 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=53.2
Q ss_pred ccCHHHHHHHHHHHHhC--------CCe----EEEEeC---cc----chhhhcCCCCCCCCceEEEcCCCCC----CCCC
Q 041902 21 QGHINPALQLARRLIRI--------GTR----VTFATT---IF----AYRRMANSPTPEDGLSFASFSDGYD----DGFN 77 (470)
Q Consensus 21 ~GH~~P~l~la~~L~~~--------Gh~----V~~~~~---~~----~~~~v~~~~~~~~g~~~~~i~~~~~----~~~~ 77 (470)
.|.+--.+.+|++|.+. |-+ |.++|- +. +...+ +......+...+.+|=+-. ....
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~l-e~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRL-EKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSE-EEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccc-cccCCCCCcEEEEecCCCCcchhhhcc
Confidence 35677788999888652 443 544431 11 11111 1100004455555652211 1111
Q ss_pred CCCCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc--hhHHHHHHHcCCCeEEEe
Q 041902 78 SKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL--PWTAEVARAYHLPSALLW 140 (470)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~ 140 (470)
+.-+. +.+++.+...+.. .+..++. .+||+|+....- ..|..+++++|||.+.+.
T Consensus 375 srf~l-WPyLe~fa~d~~~---~i~~e~~----~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~ia 431 (550)
T PF00862_consen 375 SRFDL-WPYLEEFADDAER---EILAELQ----GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIA 431 (550)
T ss_dssp -GGG--GGGHHHHHHHHHH---HHHHHHT----S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-
T ss_pred chhhc-hhhHHHHHHHHHH---HHHHHhC----CCCcEEEeccCcchHHHHHHHhhcCCceehhh
Confidence 11234 6677776654333 2333332 479999987322 367889999999988763
No 364
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.51 E-value=1.2e+02 Score=26.61 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=26.6
Q ss_pred HHHHhhhhcCCCCccEEEeC--CCchhHHHHHHHcCCCeEEE
Q 041902 100 EIITGSENQGAQPFTCLVYS--LLLPWTAEVARAYHLPSALL 139 (470)
Q Consensus 100 ~~~~~l~~~~~~~pDlvv~d--~~~~~~~~~A~~~giP~i~~ 139 (470)
.+.+..+. .++|.|++= .-++.|..+|.++|+|++.+
T Consensus 44 ~~~~~~~~---~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD---DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc---cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 34444443 459999884 23457999999999999984
No 365
>PRK13337 putative lipid kinase; Reviewed
Probab=31.48 E-value=1.1e+02 Score=29.39 Aligned_cols=81 Identities=14% Similarity=-0.020 Sum_probs=46.1
Q ss_pred EEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhcccccccc
Q 041902 282 IYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGC 361 (470)
Q Consensus 282 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~ 361 (470)
+.++-.|........+..+...+...+..+.+..... ..+ ...+.++ ..-...++
T Consensus 6 ~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~-~~~--------a~~~a~~--------------~~~~~~d~-- 60 (304)
T PRK13337 6 IIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTG-PGD--------ATLAAER--------------AVERKFDL-- 60 (304)
T ss_pred EEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecC-CCC--------HHHHHHH--------------HHhcCCCE--
Confidence 4444444322223446667778888887776555443 211 1111111 01122345
Q ss_pred ceeccCchhhhhhhhc------CCcEeecccc
Q 041902 362 FVTHCGWNSSLESLVC------GVPVVAFPQW 387 (470)
Q Consensus 362 ~ItHGG~gt~~eal~~------GvP~v~~P~~ 387 (470)
+|.-||=||+.|++.. ..|+-++|..
T Consensus 61 vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 61 VIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred EEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 9999999999998762 3578899964
No 366
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=31.41 E-value=2e+02 Score=28.42 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=27.1
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEE
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVI 315 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 315 (470)
-+..+...+++++.|||++-|=..+ .+.....+..+...--.+|-+..
T Consensus 125 ldAl~iA~~nPdk~VVF~avGFETT-aP~~A~~i~~a~~~~~~Nfsvl~ 172 (369)
T TIGR00075 125 MDALKIAKENPDRKVVFFAIGFETT-APTTASTLLSAKAEDINNFFFLS 172 (369)
T ss_pred HHHHHHHHHCCCCeEEEEecCchhc-cHHHHHHHHHHHHcCCCcEEEEE
Confidence 5555666777889999999885443 22333444444443223444433
No 367
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=31.37 E-value=87 Score=30.00 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=30.3
Q ss_pred CCCEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 9 HQPHFL-LVTFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 9 ~~~~il-~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
.+||++ |..=|+-|-..=...||..|++.|++|.++-.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~ 40 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGC 40 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEec
Confidence 456554 44447788999999999999999999999943
No 368
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=31.33 E-value=43 Score=31.72 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEE
Q 041902 29 QLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFAS 67 (470)
Q Consensus 29 ~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~ 67 (470)
-+|..|.+.||+|++++.....+.+ .. .|+.+..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i-~~----~Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL-NQ----EGLRIVS 38 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH-HH----CCcEEEe
Confidence 4688899999999999887555666 55 6776554
No 369
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.02 E-value=67 Score=30.83 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=38.1
Q ss_pred hccccccccceeccCchhhhhhhh----cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHh
Q 041902 353 VLSHEAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVM 428 (470)
Q Consensus 353 vl~~~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl 428 (470)
+...+++ +|+=||-||++.|.+ .++|++.+-.+ .+|.. ..++.+++.+++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G--------------~lGFl------~~~~~~~~~~~l~~i~ 117 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG--------------NLGFL------TDLDPDNALQQLSDVL 117 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC--------------CCCcc------cccCHHHHHHHHHHHH
Confidence 3345666 999999999999975 36787666321 01322 2356788889999988
Q ss_pred c
Q 041902 429 G 429 (470)
Q Consensus 429 ~ 429 (470)
+
T Consensus 118 ~ 118 (292)
T PRK03378 118 E 118 (292)
T ss_pred c
Confidence 7
No 370
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=30.74 E-value=1.9e+02 Score=25.13 Aligned_cols=28 Identities=11% Similarity=-0.050 Sum_probs=22.7
Q ss_pred CccEEEeCCCch---hHHHHHHHcCCCeEEE
Q 041902 112 PFTCLVYSLLLP---WTAEVARAYHLPSALL 139 (470)
Q Consensus 112 ~pDlvv~d~~~~---~~~~~A~~~giP~i~~ 139 (470)
+||+|++-.... .+..+|..+|.|++.=
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 499999975543 5788999999999973
No 371
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=30.56 E-value=3.7e+02 Score=23.50 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=49.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc----chh--hhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF----AYR--RMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~----~~~--~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
.|.+++..+.|-..-.+.+|-+-.-+|.+|.++-.-. +.+ .+ +.+ .++.+.....++.... +
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l-~~l---~~~~~~~~g~~f~~~~----~---- 72 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKAL-KKL---PNVEIERFGKGFVWRM----N---- 72 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHH-GGG---T--EEEE--TT----G----G----
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHH-HhC---CeEEEEEcCCcccccC----C----
Confidence 5778899999999988888877777788888884321 111 12 221 5577777665432211 1
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL 122 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~ 122 (470)
--..-...+...+....+.+.. .++|+||-|-..
T Consensus 73 ~~~~~~~~~~~~~~~a~~~i~~---~~~dlvILDEi~ 106 (172)
T PF02572_consen 73 EEEEDRAAAREGLEEAKEAISS---GEYDLVILDEIN 106 (172)
T ss_dssp GHHHHHHHHHHHHHHHHHHTT----TT-SEEEEETHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhC---CCCCEEEEcchH
Confidence 1111144455566555555544 479999999644
No 372
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=30.45 E-value=1e+02 Score=30.10 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=25.2
Q ss_pred ccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhc
Q 041902 354 LSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCK 402 (470)
Q Consensus 354 l~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~G 402 (470)
|+..+. .++|||+....-- .-|=+++|+ +-.+.+++ -|
T Consensus 266 l~~~~~--~~~HgGYD~~~an---~D~N~v~Pl-----D~LreL~~-EG 303 (349)
T PF07355_consen 266 LSSDDY--MTIHGGYDPAYAN---EDPNRVFPL-----DRLRELEK-EG 303 (349)
T ss_pred CCccce--EeeccccChhHhc---cCCCeeeeH-----HHHHHHHH-cC
Confidence 444555 8999999876644 777888884 23455565 45
No 373
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=30.36 E-value=68 Score=20.97 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 041902 416 ESDEIKRCLELVMGEG-DEFRGNSLKW 441 (470)
Q Consensus 416 ~~~~l~~~i~~vl~~~-~~~r~~a~~~ 441 (470)
++++|.+||..|.. + -++++.|+.+
T Consensus 1 tee~l~~Ai~~v~~-g~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKN-GKMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHT-TSS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 57899999999998 6 5777776654
No 374
>PRK13695 putative NTPase; Provisional
Probab=30.21 E-value=3.5e+02 Score=23.17 Aligned_cols=36 Identities=22% Similarity=0.145 Sum_probs=29.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
|+|++.-.++.|=..=+..++..|...|+.+.-+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~~~ 36 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGFYT 36 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 789999889999888888888889888988653333
No 375
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=29.86 E-value=1.5e+02 Score=26.40 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhhhcCCCCccEEEeCC--CchhHHHHHHHcCC-CeEEEech
Q 041902 94 SSEALTEIITGSENQGAQPFTCLVYSL--LLPWTAEVARAYHL-PSALLWIQ 142 (470)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~pDlvv~d~--~~~~~~~~A~~~gi-P~i~~~~~ 142 (470)
....+.++-+.+.+++ .+||+||+=. -...|..++..+|+ |...+-+.
T Consensus 12 I~~~~~~lA~kI~~s~-~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~ 62 (192)
T COG2236 12 IHRLCRALAEKIRASG-FKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVE 62 (192)
T ss_pred HHHHHHHHHHHHHHcC-CCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEE
Confidence 4455667777777777 9999998853 34568999999999 66665544
No 376
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=29.76 E-value=57 Score=30.61 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=28.7
Q ss_pred CEEEEEcCCCccCH---HHHHHHHHHHHhCCCeEEEEeCccchh
Q 041902 11 PHFLLVTFPAQGHI---NPALQLARRLIRIGTRVTFATTIFAYR 51 (470)
Q Consensus 11 ~~il~~~~~~~GH~---~P~l~la~~L~~~Gh~V~~~~~~~~~~ 51 (470)
||++|++.+..+-+ .-.-.|++-|+.||++|+.+=.+.+..
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYlN 44 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYLN 44 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SSS
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccccc
Confidence 68899998766555 447789999999999999997665544
No 377
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.70 E-value=71 Score=30.36 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=35.3
Q ss_pred ccccccceeccCchhhhhhhh---cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 356 HEAVGCFVTHCGWNSSLESLV---CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt~~eal~---~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
.+++ +|.-||-||+.+++. .++|++.++.+. + |- + ..++.+++.+++.+++.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~------------l--GF-l-----~~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINMGT------------L--GF-L-----TEVEPEETFFALSRLLE 111 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeCCC------------C--Cc-c-----ccCCHHHHHHHHHHHHc
Confidence 3555 999999999999874 356888776321 1 11 1 23556777788888777
No 378
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=29.62 E-value=1e+02 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=23.0
Q ss_pred ccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 113 FTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 113 pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
-|++|+.. .+..++|..+|+|++.++.
T Consensus 263 a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 263 AQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred CCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 79999973 5689999999999998864
No 379
>PRK13768 GTPase; Provisional
Probab=29.46 E-value=1.7e+02 Score=27.34 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=30.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
-+++.-.++.|-..=+..++..|+..|++|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4455555777888889999999999999999997554
No 380
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.40 E-value=7e+02 Score=27.42 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=29.3
Q ss_pred CEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTF--PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~--~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
.|++.++. |+-|-..=.+.||..|+..|++|.++=.+
T Consensus 531 ~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35555544 67788899999999999999999999543
No 381
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=29.40 E-value=5.9e+02 Score=25.44 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=99.4
Q ss_pred ChhHHHHhhccCCCCceEEEEecccc-----cCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhC
Q 041902 265 SKEYYMEWLSSKPKSSVIYVAFGTIC-----VLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELN 339 (470)
Q Consensus 265 ~~~~~~~~l~~~~~~~vV~vs~GS~~-----~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (470)
+.+.+.+.|..-+++.||+.- |-+. .++.+++..+++.+.+.+.=.++-+-.. +-+. +.+..-.+++.-..
T Consensus 158 df~~mla~L~~a~~~~vvLLH-~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQ-GF~~--GleeDa~~lR~~a~ 233 (396)
T COG1448 158 DFDGMLADLKTAPEGSVVLLH-GCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQ-GFAD--GLEEDAYALRLFAE 233 (396)
T ss_pred cHHHHHHHHHhCCCCCEEEEe-cCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhh-hhcc--chHHHHHHHHHHHH
Confidence 447777778777777677653 3322 5678899999999998763222222111 1110 00011111211111
Q ss_pred --CCeEEeeccChhhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCH
Q 041902 340 --EKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILES 417 (470)
Q Consensus 340 --~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~ 417 (470)
..+++.....-+--|=...|++++-.+=...+..-+..-++-++.-.+.-=|.++++++. .-++.
T Consensus 234 ~~~~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva-------------~IL~~ 300 (396)
T COG1448 234 VGPELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVA-------------TILNN 300 (396)
T ss_pred hCCcEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHH-------------HHhCC
Confidence 225555444433333356666677666666666666666666666666666666666665 34667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhc
Q 041902 418 DEIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQ 451 (470)
Q Consensus 418 ~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~ 451 (470)
.+|++...+-+. .||.+..+|+..+.+....
T Consensus 301 p~Lra~W~~El~---~Mr~Ri~~mR~~lv~~L~~ 331 (396)
T COG1448 301 PELRAEWEQELE---EMRQRILEMRQALVDALKA 331 (396)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 777777777776 7999999999998877665
No 382
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=29.25 E-value=1e+02 Score=25.38 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=26.4
Q ss_pred CEEEEEcC-CCccCH--HHHHHHHHHHHhCCCeE-EEEeCccchh
Q 041902 11 PHFLLVTF-PAQGHI--NPALQLARRLIRIGTRV-TFATTIFAYR 51 (470)
Q Consensus 11 ~~il~~~~-~~~GH~--~P~l~la~~L~~~Gh~V-~~~~~~~~~~ 51 (470)
||++|+-. +-+|+- .-.+.+|+.+.+.||+| .++--.+-.-
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~DgV~ 45 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQDGVL 45 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEehHHHH
Confidence 66655444 445554 45778899999999995 5554444333
No 383
>PRK13604 luxD acyl transferase; Provisional
Probab=29.21 E-value=1.2e+02 Score=29.33 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
.+...++++.+..++-.-+..+|+.|.++|+.|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344677778888888777999999999999998876
No 384
>PRK02399 hypothetical protein; Provisional
Probab=29.19 E-value=3.7e+02 Score=27.11 Aligned_cols=93 Identities=14% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCCceEEEEe-cccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeE-Ee-eccChhhh
Q 041902 277 PKSSVIYVAF-GTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGM-IV-PWCSQVEV 353 (470)
Q Consensus 277 ~~~~vV~vs~-GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-v~-~~vp~~~v 353 (470)
.+||+|=+|+ |. ...-...+...|++.|+++++..-++ ..+ ..+++-+.+..+ -+ +...+...
T Consensus 184 ~~kp~Ig~TmfGv----Ttp~v~~~~~~Le~~GyEvlVFHATG-~GG---------raME~Li~~G~~~gVlDlTttEv~ 249 (406)
T PRK02399 184 DDKPLIGLTMFGV----TTPCVQAAREELEARGYEVLVFHATG-TGG---------RAMEKLIDSGLIAGVLDLTTTEVC 249 (406)
T ss_pred CCCceEEEecCCC----cHHHHHHHHHHHHhCCCeEEEEcCCC-Cch---------HHHHHHHHcCCceEEEEcchHHHH
Confidence 3577877665 43 33567788999999999988776666 222 122222222211 12 54444331
Q ss_pred ccccccccceeccCchhhhhhhhcCCcEeeccc
Q 041902 354 LSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 354 l~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~ 386 (470)
= .+-+-|..+|-.=...|...|+|||+.|-
T Consensus 250 d---~l~GGv~sagp~Rl~Aa~~~gIP~Vvs~G 279 (406)
T PRK02399 250 D---ELFGGVLAAGPDRLEAAARTGIPQVVSPG 279 (406)
T ss_pred H---HHhCcCccCCccHHHHHHHcCCCEEecCC
Confidence 1 11112555677778889999999998774
No 385
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=29.07 E-value=45 Score=30.99 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCcc
Q 041902 27 ALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
+-.|+++|++.||+|+++++..
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 4578889999999999998864
No 386
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.90 E-value=69 Score=30.70 Aligned_cols=51 Identities=18% Similarity=0.330 Sum_probs=40.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc--hhhhcCCCCCCCCceEEEcCC
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA--YRRMANSPTPEDGLSFASFSD 70 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~--~~~v~~~~~~~~g~~~~~i~~ 70 (470)
..+|.++-++++||.+ |.-|++.|.+|.+...+.. .+.. +. .|+...++.+
T Consensus 18 gK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA-~~----dGf~V~~v~e 70 (338)
T COG0059 18 GKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKA-KE----DGFKVYTVEE 70 (338)
T ss_pred CCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHH-Hh----cCCEeecHHH
Confidence 3599999999999976 5679999999999976543 3455 55 8999888753
No 387
>PLN02891 IMP cyclohydrolase
Probab=28.89 E-value=1.2e+02 Score=31.52 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=36.2
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC--CCCC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD--GYDD 74 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~--~~~~ 74 (470)
++.|+-.+-=. -+..+|+.|.+.|+++ +++....+.+ +. .|+....+.+ ++|+
T Consensus 23 krALISVsDKt----gi~~fAk~L~~~gveI--iSTgGTak~L-~e----~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 23 KQALISLSDKT----DLALLANGLQELGYTI--VSTGGTASAL-EA----AGVSVTKVEELTNFPE 77 (547)
T ss_pred cEEEEEEeccc----CHHHHHHHHHHCCCEE--EEcchHHHHH-HH----cCCceeeHHhccCCch
Confidence 34555444333 3789999999988775 5666777777 66 7899888853 4444
No 388
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=28.88 E-value=41 Score=28.24 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEc
Q 041902 29 QLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASF 68 (470)
Q Consensus 29 ~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i 68 (470)
-+|..|++.||+|++++.....+.+ +. .|+.+..-
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~-~~----~g~~~~~~ 46 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAI-KE----QGLTITGP 46 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHH-HH----HCEEEEET
T ss_pred HHHHHHHHCCCceEEEEccccHHhh-hh----eeEEEEec
Confidence 4688999999999999998844555 54 56666544
No 389
>PRK06769 hypothetical protein; Validated
Probab=28.83 E-value=3.8e+02 Score=23.11 Aligned_cols=94 Identities=12% Similarity=-0.002 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCccc-----------hhhhcCCCCCCCCceEEEcCCC-CCCCCCCCCCCchhhHHHHHHHh
Q 041902 27 ALQLARRLIRIGTRVTFATTIFA-----------YRRMANSPTPEDGLSFASFSDG-YDDGFNSKQNDPRRYVSEFKRRS 94 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~~-----------~~~v~~~~~~~~g~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
...+-+.|+++|+.+.++|.... ...+ +. .|+..+-+... ..... ...++ .
T Consensus 33 v~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~----~g~~~~~~~~~~~~~~~-~~~KP-----------~ 95 (173)
T PRK06769 33 TKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KG----FGFDDIYLCPHKHGDGC-ECRKP-----------S 95 (173)
T ss_pred HHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-Hh----CCcCEEEECcCCCCCCC-CCCCC-----------C
Confidence 45678899999999999987642 2223 33 44432211111 01100 01111 1
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 95 SEALTEIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
...+...++.+.. .+-++++.+-. .....+|+..|+.+|.+.+
T Consensus 96 p~~~~~~~~~l~~---~p~~~i~IGD~-~~Di~aA~~aGi~~i~v~~ 138 (173)
T PRK06769 96 TGMLLQAAEKHGL---DLTQCAVIGDR-WTDIVAAAKVNATTILVRT 138 (173)
T ss_pred HHHHHHHHHHcCC---CHHHeEEEcCC-HHHHHHHHHCCCeEEEEec
Confidence 1222233333321 22356655433 4689999999999998754
No 390
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=28.73 E-value=1.6e+02 Score=27.98 Aligned_cols=22 Identities=32% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCeEEEEeCccc
Q 041902 28 LQLARRLIRIGTRVTFATTIFA 49 (470)
Q Consensus 28 l~la~~L~~~Gh~V~~~~~~~~ 49 (470)
.++|..++++|++|.++..+..
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 4678889999999999987643
No 391
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=28.50 E-value=1.7e+02 Score=26.64 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=36.6
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
..+.--+++.-.++.|-..-...++.....+|..|.|++.+...+.+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 34445567777789999999999988888899999999987655443
No 392
>PRK10037 cell division protein; Provisional
Probab=28.34 E-value=86 Score=29.08 Aligned_cols=33 Identities=21% Similarity=0.139 Sum_probs=28.3
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 12 HFLLVTF-PAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
.|.|... |+-|-..=...||..|+++|++|.++
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 3455555 88899999999999999999999999
No 393
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=28.32 E-value=2.2e+02 Score=28.21 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=48.7
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEee
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVP 346 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~ 346 (470)
+++.+++.+.+ ++++.|+-++.. ....+.+...|+..+..+++..-.+ + ...+... +. .+
T Consensus 19 ~~l~~~l~~~g-~~~livtd~~~~---~~~~~~v~~~l~~~~~~~~~~~~~~-e--------p~~~~v~-~~------~~ 78 (366)
T PRK09423 19 ARLGEYLKPLG-KRALVIADEFVL---GIVGDRVEASLKEAGLTVVFEVFNG-E--------CSDNEID-RL------VA 78 (366)
T ss_pred HHHHHHHHHcC-CEEEEEEChhHH---HHHHHHHHHHHHhCCCeEEEEEeCC-C--------CCHHHHH-HH------HH
Confidence 44555565544 445666633332 2366778888888776654322212 1 1111111 00 00
Q ss_pred ccChhhhccccccccceeccCchhhhhh-----hhcCCcEeecccc
Q 041902 347 WCSQVEVLSHEAVGCFVTHCGWNSSLES-----LVCGVPVVAFPQW 387 (470)
Q Consensus 347 ~vp~~~vl~~~~v~~~ItHGG~gt~~ea-----l~~GvP~v~~P~~ 387 (470)
.+- =..+++ +|-=|| ||++.+ +..|+|++.+|..
T Consensus 79 ~~~----~~~~d~--IIavGG-Gsv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 79 IAE----ENGCDV--VIGIGG-GKTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred HHH----hcCCCE--EEEecC-hHHHHHHHHHHHHcCCCEEEeCCc
Confidence 000 013565 899888 555443 4559999999975
No 394
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.95 E-value=65 Score=30.55 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=37.5
Q ss_pred hhhccccccccceeccCchhhhhhhh----cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHH
Q 041902 351 VEVLSHEAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLEL 426 (470)
Q Consensus 351 ~~vl~~~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~ 426 (470)
..+...+++ +|+=||-||++.|.+ .++|++.+-.. .+|-.. .++.+++.+.+.+
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~------~~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT------DIDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc------cCCHHHHHHHHHH
Confidence 444445677 999999999998755 36788776321 133222 3566777777777
Q ss_pred Hhc
Q 041902 427 VMG 429 (470)
Q Consensus 427 vl~ 429 (470)
++.
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 776
No 395
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.86 E-value=84 Score=29.77 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=36.3
Q ss_pred ccccccceeccCchhhhhhhhc-CCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 356 HEAVGCFVTHCGWNSSLESLVC-GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt~~eal~~-GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
.+++ +|+=||-||++.|.+. .+|++.+-.+ .+|-. .+++.+++.++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL------~~~~~~~~~~~l~~i~~ 104 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFL------TEIEIDEVGSAIKKLIR 104 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccC------cccCHHHHHHHHHHHHc
Confidence 4666 9999999999999884 5566555210 01221 24677888899999988
No 396
>KOG1509 consensus Predicted nucleic acid-binding protein ASMTL [Cell cycle control, cell division, chromosome partitioning]
Probab=27.73 E-value=1.7e+02 Score=26.15 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=45.0
Q ss_pred hCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHHHhhhhcCCCC-cc
Q 041902 36 RIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEIITGSENQGAQP-FT 114 (470)
Q Consensus 36 ~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-pD 114 (470)
..|+++++++.+..++.+.+. .|+++.-.+.++.++..... . ................++++.+.+.. ++ ||
T Consensus 7 ~~~~riiL~S~s~rrk~i~~~----~G~~~~~~~S~feEnl~k~~-~-~~p~~yv~~tA~~KA~~I~erL~~~E-d~~~~ 79 (209)
T KOG1509|consen 7 LKGKRIILASASPRRKQILAE----MGLNLEVVVSTFEENLIKSS-F-ETPEDYVVETAKQKAEEIIERLGDGE-DSFPD 79 (209)
T ss_pred hcCcEEEEecCCchHHHHHHH----cCCceEEEeccchhhchhhc-c-CCHHHHHHHHHHHHHHHHHHHhhccc-cCCcc
Confidence 468999999888777766577 89998888877776543321 1 22233333334444455666665332 22 55
Q ss_pred EEEe
Q 041902 115 CLVY 118 (470)
Q Consensus 115 lvv~ 118 (470)
++++
T Consensus 80 ~vi~ 83 (209)
T KOG1509|consen 80 VVIS 83 (209)
T ss_pred cccc
Confidence 5544
No 397
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=27.57 E-value=1.8e+02 Score=30.72 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=22.5
Q ss_pred ccccccceeccCch------hhhhhhhcCCcEeecc
Q 041902 356 HEAVGCFVTHCGWN------SSLESLVCGVPVVAFP 385 (470)
Q Consensus 356 ~~~v~~~ItHGG~g------t~~eal~~GvP~v~~P 385 (470)
++.+ +++|.|-| .+++|...++|+|++.
T Consensus 76 ~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 76 KPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445 78887776 6889999999999995
No 398
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=27.51 E-value=3.2e+02 Score=27.34 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred hhhccccccccceeccCchhhhhhhhcCCcEeeccccchhhHHHHHHHhhhccee-EeeecCCCCcCHHHHHHHHHHHhc
Q 041902 351 VEVLSHEAVGCFVTHCGWNSSLESLVCGVPVVAFPQWTDQGTNAKIIVDFCKTGV-RVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 351 ~~vl~~~~v~~~ItHGG~gt~~eal~~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~-~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..++.++++ +|. .=.=++.-|+..|+|.+++- =|+-+...+++ +|+-- .++. ..++.+.+.+.+.+.+.
T Consensus 280 ~~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i~---Y~~K~~~l~~~-~gl~~~~~~i---~~~~~~~l~~~~~e~~~ 349 (385)
T COG2327 280 GGILAACDL--IVG-MRLHSAIMALAFGVPAIAIA---YDPKVRGLMQD-LGLPGFAIDI---DPLDAEILSAVVLERLT 349 (385)
T ss_pred HHHhccCce--EEe-ehhHHHHHHHhcCCCeEEEe---ecHHHHHHHHH-cCCCcccccC---CCCchHHHHHHHHHHHh
Confidence 557777776 553 23336778999999999984 34555566665 77643 2343 67899999999988888
Q ss_pred CCHHHHHH
Q 041902 430 EGDEFRGN 437 (470)
Q Consensus 430 ~~~~~r~~ 437 (470)
+.++.+++
T Consensus 350 ~~~~~~~~ 357 (385)
T COG2327 350 KLDELRER 357 (385)
T ss_pred ccHHHHhh
Confidence 55565555
No 399
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.31 E-value=97 Score=29.24 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=35.9
Q ss_pred ccccccceeccCchhhhhhhhc-----CCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 356 HEAVGCFVTHCGWNSSLESLVC-----GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 356 ~~~v~~~ItHGG~gt~~eal~~-----GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
.+++ +|+=||-||++.|++. .+|.+.+-..+ .+|-. .+++.+++.+++.++++
T Consensus 39 ~~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G-------------~lGFL------~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 39 NANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD-------------QLGFY------CDFHIDDLDKMIQAITK 96 (264)
T ss_pred CccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC-------------CCeEc------ccCCHHHHHHHHHHHHc
Confidence 3566 9999999999999874 45655542200 12221 24677888888888887
No 400
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=27.06 E-value=2.1e+02 Score=24.65 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=21.4
Q ss_pred ccccccceeccCch------hhhhhhhcCCcEeeccc
Q 041902 356 HEAVGCFVTHCGWN------SSLESLVCGVPVVAFPQ 386 (470)
Q Consensus 356 ~~~v~~~ItHGG~g------t~~eal~~GvP~v~~P~ 386 (470)
++.+ +++|.|-| ++.+|...++|+|++.-
T Consensus 64 ~~~v--~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 64 RPGV--VIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp SEEE--EEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred cceE--EEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3555 78887755 67788999999999874
No 401
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=26.95 E-value=2.6e+02 Score=26.82 Aligned_cols=87 Identities=10% Similarity=-0.008 Sum_probs=48.6
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEee
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVP 346 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~ 346 (470)
.++..+....+-+.+-+-........+...+..+.+++++.|..+++.++.. ... ..+. . .....
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~-~~~---------~~~~----~-~~~~p 180 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG-PGG---------AGLE----K-GHSDP 180 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC-CCC---------cccc----c-CCCCc
Confidence 4555555543322233323333334455668899999999999999977765 211 1100 0 00011
Q ss_pred ccChhhhccccccccceeccCc
Q 041902 347 WCSQVEVLSHEAVGCFVTHCGW 368 (470)
Q Consensus 347 ~vp~~~vl~~~~v~~~ItHGG~ 368 (470)
..=.....+.|.++.++.|.|.
T Consensus 181 ~~~~~va~~fP~l~IVl~H~G~ 202 (293)
T COG2159 181 LYLDDVARKFPELKIVLGHMGE 202 (293)
T ss_pred hHHHHHHHHCCCCcEEEEecCC
Confidence 1113345566788889999994
No 402
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=26.94 E-value=90 Score=26.94 Aligned_cols=46 Identities=26% Similarity=0.314 Sum_probs=31.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 16 VTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 16 ~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
+-+|+.|++-- .++++|.++||+|+.++.......- . .+++.+...
T Consensus 2 ~V~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~--~----~~~~~~~~d 47 (183)
T PF13460_consen 2 LVFGATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED--S----PGVEIIQGD 47 (183)
T ss_dssp EEETTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH--C----TTEEEEESC
T ss_pred EEECCCChHHH--HHHHHHHHCCCEEEEEecCchhccc--c----cccccceee
Confidence 34567777754 3789999999999999876442221 3 677777654
No 403
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=26.92 E-value=1.4e+02 Score=22.01 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=28.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
+++...++.|-..-...++..|++.|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666788888999999999999999998876
No 404
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=26.69 E-value=1.3e+02 Score=25.93 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=23.7
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHhCCC
Q 041902 281 VIYVAFGTICVLEKRQVEEIARGLLDSGH 309 (470)
Q Consensus 281 vV~vs~GS~~~~~~~~~~~~~~al~~~~~ 309 (470)
.||+++||-.......++..+.++...+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999887666778888888888663
No 405
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.56 E-value=1e+02 Score=29.58 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=38.4
Q ss_pred cccccccceeccCchhhhhhhh----cCCcEeeccccchhhHHHHHHHhhhcceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 355 SHEAVGCFVTHCGWNSSLESLV----CGVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 355 ~~~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..+++ +|+=||-||+.++++ .++|++.+..+ + +|. + ..++.+++.++|++++.
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~---lGF-l-----~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------R---LGF-L-----TDIRPDELEFKLAEVLD 117 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c---ccc-c-----ccCCHHHHHHHHHHHHc
Confidence 34666 999999999999975 36788777531 1 221 1 24678899999999987
No 406
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.49 E-value=97 Score=28.92 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=28.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
.|.|+.=|+-|-..=+..||..|+++|++|.++
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlli 35 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIV 35 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 356665588899999999999999999999998
No 407
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.29 E-value=69 Score=32.15 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=36.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
=||+---|+-|--.=+|.++..|+.+| .|.+++++....++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 455666699999999999999999999 99999999888776
No 408
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=26.19 E-value=1.1e+02 Score=28.11 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.7
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 12 HFLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
.|.|... |+-|-..-.+.||..|+++|++|.++=.+
T Consensus 3 iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~D 39 (231)
T PRK13849 3 LLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEAD 39 (231)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 3445555 88899999999999999999999998544
No 409
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=26.13 E-value=5.4e+02 Score=24.84 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=41.6
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeE-EeeccChhhhccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGM-IVPWCSQVEVLSH 356 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~-v~~~vp~~~vl~~ 356 (470)
.+.+.++.+|+++ ..+..-+...|.+++..-+.. . . . ..+. ........++++.
T Consensus 136 g~tvgIvG~G~IG-------~~vA~~l~afG~~V~~~~~~~-~-~-------~---------~~~~~~~~~~~l~e~l~~ 190 (312)
T PRK15469 136 DFTIGILGAGVLG-------SKVAQSLQTWGFPLRCWSRSR-K-S-------W---------PGVQSFAGREELSAFLSQ 190 (312)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCEEEEEeCCC-C-C-------C---------CCceeecccccHHHHHhc
Confidence 3568899999988 335555666777765533222 1 0 0 0111 1123355778999
Q ss_pred cccccceeccCchhhhhh
Q 041902 357 EAVGCFVTHCGWNSSLES 374 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~ea 374 (470)
+++ ++.|.-.+.-.+.
T Consensus 191 aDv--vv~~lPlt~~T~~ 206 (312)
T PRK15469 191 TRV--LINLLPNTPETVG 206 (312)
T ss_pred CCE--EEECCCCCHHHHH
Confidence 999 8888876654433
No 410
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=26.13 E-value=1.2e+02 Score=30.33 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=30.3
Q ss_pred CCCEEE-EEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 9 HQPHFL-LVTF-PAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 9 ~~~~il-~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
++++|+ |..+ |+-|-..-.+.||..|+.+|++|.++=
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 335554 5555 888999999999999999999999984
No 411
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=25.85 E-value=3e+02 Score=27.16 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCCCCCCCCCCCc--hh
Q 041902 10 QPHFLLVTFPAQ--GHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYDDGFNSKQNDP--RR 85 (470)
Q Consensus 10 ~~~il~~~~~~~--GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~--~~ 85 (470)
++||.+++.++. |=-+-...+.+.+...|.+|.-+- ..+.-.+ +. . +.++.........+.+..+ ..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~-~Gy~GL~-~~----~---i~~l~~~~v~~~~~~GGT~lgss 72 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIY-NGYLGLL-EG----D---IKPLTREDVDDLINRGGTFLGSA 72 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEe-cchhhhc-CC----c---ceeccccchhHHHhcCCeEEeeC
Confidence 468888888665 555667789999999999987763 3344444 22 1 2222111001000110000 00
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEe---CCCchhHHHHHHHcCCCeEEE
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVY---SLLLPWTAEVARAYHLPSALL 139 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~---d~~~~~~~~~A~~~giP~i~~ 139 (470)
....+ ...+.....++.+++ ...|.+|. |.....+..+|++.++|+|-+
T Consensus 73 R~~~~--~~~e~~~~~~~~l~~---~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 73 RFPEF--KTEEGRKVAAENLKK---LGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred CCCCc--ccHHHHHHHHHHHHH---cCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 00000 011222244555555 45787766 444457899999999999873
No 412
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=25.85 E-value=2.3e+02 Score=22.17 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=30.8
Q ss_pred CEEEEEcC--CCccC-HHHHHHHHHHHHhCC---CeEEEEeCccchhhh
Q 041902 11 PHFLLVTF--PAQGH-INPALQLARRLIRIG---TRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~--~~~GH-~~P~l~la~~L~~~G---h~V~~~~~~~~~~~v 53 (470)
|+++++.. |.... ..-.+.++..+...| |+|+++...+-...+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~ 49 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLA 49 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGG
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHH
Confidence 46666665 33333 677788899999999 999999888776666
No 413
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.82 E-value=1.1e+02 Score=25.29 Aligned_cols=41 Identities=27% Similarity=0.350 Sum_probs=29.8
Q ss_pred EEEEcCCCc-cCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 13 FLLVTFPAQ-GHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 13 il~~~~~~~-GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
++.+-+|-. -.+.-.+=+..+|.++|++|+++.++...+.+
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~kLl 47 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAALKLL 47 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhheee
Confidence 344444444 34555677899999999999999988776666
No 414
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=25.73 E-value=1e+02 Score=27.84 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=22.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
|++.++-. |++- -.||++|...||+|++.+...
T Consensus 2 ~~~~i~Gt---GniG--~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGT---GNIG--SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEEEecc---ChHH--HHHHHHHHhCCCeEEEecCCC
Confidence 45555444 4433 467888999999999996544
No 415
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=25.68 E-value=1.5e+02 Score=23.86 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
||++..-++.|-..-...+++.|+++|.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999886654
No 416
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=25.53 E-value=4.1e+02 Score=22.33 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=30.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|.+.-.++.|-...+..++..|..+|++|.++..+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 56677788899999999999999999999998655
No 417
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.49 E-value=81 Score=32.04 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=22.5
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||++|.... ...+|+++|||++.+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 47999999864 6778999999998764
No 418
>PRK07206 hypothetical protein; Provisional
Probab=25.46 E-value=3.3e+02 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=23.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
+++++-....| ..++++++++|++|..+....
T Consensus 4 ~~liv~~~~~~-----~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSSG-----KFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCchH-----HHHHHHHHHcCCeEEEEEcCC
Confidence 67777654333 468899999999998887653
No 419
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=25.42 E-value=1.1e+02 Score=30.49 Aligned_cols=11 Identities=45% Similarity=0.854 Sum_probs=9.3
Q ss_pred cCCcEeecccc
Q 041902 377 CGVPVVAFPQW 387 (470)
Q Consensus 377 ~GvP~v~~P~~ 387 (470)
.++|++++|..
T Consensus 129 ~~~P~i~IPTT 139 (379)
T TIGR02638 129 PGVPIIAIPTT 139 (379)
T ss_pred CCCCEEEECCC
Confidence 46899999986
No 420
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=25.20 E-value=57 Score=32.75 Aligned_cols=28 Identities=43% Similarity=0.454 Sum_probs=22.1
Q ss_pred ccCHHHHH---HHHHHHHhCCCeEEEEeCcc
Q 041902 21 QGHINPAL---QLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 21 ~GH~~P~l---~la~~L~~~Gh~V~~~~~~~ 48 (470)
.||+.|++ .+|+-++.+||+|.|+++.+
T Consensus 16 lGH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 16 LGHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 49999877 56888888999999997653
No 421
>PRK06487 glycerate dehydrogenase; Provisional
Probab=25.20 E-value=2.4e+02 Score=27.30 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=39.8
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhcccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHE 357 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~ 357 (470)
++.+..+.+|+++ +.+.+.+...|.+++..-+.. . . . ...++...++|+.+
T Consensus 148 gktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~-~-~-----------------~---~~~~~~l~ell~~s 198 (317)
T PRK06487 148 GKTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG-R-P-----------------A---RPDRLPLDELLPQV 198 (317)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC-C-c-----------------c---cccccCHHHHHHhC
Confidence 4568999999988 334555566777776532211 0 0 0 12355788999999
Q ss_pred ccccceeccCchh
Q 041902 358 AVGCFVTHCGWNS 370 (470)
Q Consensus 358 ~v~~~ItHGG~gt 370 (470)
|+ ++-|.-.+.
T Consensus 199 Di--v~l~lPlt~ 209 (317)
T PRK06487 199 DA--LTLHCPLTE 209 (317)
T ss_pred CE--EEECCCCCh
Confidence 99 888876553
No 422
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=25.17 E-value=1.2e+02 Score=30.16 Aligned_cols=45 Identities=11% Similarity=0.017 Sum_probs=24.9
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
..+.+.+.....+++++|+-++.. ....++.+...|+..+..+.+
T Consensus 12 ~~l~~~~~~~~~~r~livt~~~~~--~~g~~~~v~~~L~~~gi~~~~ 56 (375)
T cd08194 12 DETGAVLADLGGKRPLIVTDKVMV--KLGLVDKLTDSLKKEGIESAI 56 (375)
T ss_pred HHHHHHHHHcCCCeEEEEcCcchh--hcchHHHHHHHHHHCCCeEEE
Confidence 445555553333446666633332 234566778888877766544
No 423
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=25.04 E-value=1.3e+02 Score=29.93 Aligned_cols=69 Identities=19% Similarity=0.292 Sum_probs=45.1
Q ss_pred cccceeccCchhhhhhhhc-----------------CCcEeeccccchhhHHHHHHHhhhcceeEeeecC-CCCcCHHHH
Q 041902 359 VGCFVTHCGWNSSLESLVC-----------------GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE-EGILESDEI 420 (470)
Q Consensus 359 v~~~ItHGG~gt~~eal~~-----------------GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~-~~~~~~~~l 420 (470)
.++++|.||..+.+-|+.+ +.|.+.++-.. ++-+ .+..+++|+|+..-+-+ ...++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~-~Kaa~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSI-EKAARILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THH-HHHHHHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHH-HHhcceeeeEEEEecCCcchhhhHHHh
Confidence 4568999999998877633 24566664322 3444 44444799997664432 467888999
Q ss_pred HHHHHHHhc
Q 041902 421 KRCLELVMG 429 (470)
Q Consensus 421 ~~~i~~vl~ 429 (470)
.++|++..+
T Consensus 182 ~~~l~~~~~ 190 (373)
T PF00282_consen 182 EKALEKDIA 190 (373)
T ss_dssp HHHHHHHHH
T ss_pred hhhhccccc
Confidence 999888765
No 424
>PRK13054 lipid kinase; Reviewed
Probab=24.95 E-value=1.3e+02 Score=28.85 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhh
Q 041902 295 RQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLES 374 (470)
Q Consensus 295 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~ea 374 (470)
..+..+...|...+..+.+..... ..+ ..-+-........++ +|.-||=||+.|+
T Consensus 18 ~~~~~~~~~l~~~g~~~~v~~t~~-~~~----------------------a~~~a~~~~~~~~d~--vvv~GGDGTl~ev 72 (300)
T PRK13054 18 EELREAVGLLREEGHTLHVRVTWE-KGD----------------------AARYVEEALALGVAT--VIAGGGDGTINEV 72 (300)
T ss_pred HHHHHHHHHHHHcCCEEEEEEecC-CCc----------------------HHHHHHHHHHcCCCE--EEEECCccHHHHH
Q ss_pred hhc--------CCcEeecccc
Q 041902 375 LVC--------GVPVVAFPQW 387 (470)
Q Consensus 375 l~~--------GvP~v~~P~~ 387 (470)
+.. .+|+-++|..
T Consensus 73 v~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 73 ATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHhhccCCCCcEEEEeCC
No 425
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.84 E-value=1.3e+02 Score=24.84 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=39.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcC
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFS 69 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~ 69 (470)
+|++.+..+.+|-.----++..|.+.|++|.........+.+.+.... .+...+-++
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~-~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIE-TDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-cCCCEEEEe
Confidence 478889999999988888888999999999998765443333222110 455555554
No 426
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=24.84 E-value=87 Score=22.40 Aligned_cols=18 Identities=39% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 041902 28 LQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 28 l~la~~L~~~Gh~V~~~~ 45 (470)
+..|..|+++|++|+++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567889999999999993
No 427
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=24.75 E-value=1.1e+02 Score=31.59 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=38.6
Q ss_pred cccccccceeccCchhhhhhhhc----CCcEeeccccchhhHHHHHHHhhhc-ceeEeeecCCCCcCHHHHHHHHHHHhc
Q 041902 355 SHEAVGCFVTHCGWNSSLESLVC----GVPVVAFPQWTDQGTNAKIIVDFCK-TGVRVKANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 355 ~~~~v~~~ItHGG~gt~~eal~~----GvP~v~~P~~~DQ~~nA~rl~~~~G-vG~~l~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
..+++ +|+=||-||++.|.+. ++|++.+- +| +|-. ..++.+++.++|.+++.
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGFL------t~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGFM------TPFHSEQYRDCLDAILK 317 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCccee------cccCHHHHHHHHHHHHc
Confidence 34666 9999999999999774 56776652 33 4432 24688999999999988
No 428
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=24.52 E-value=6.4e+02 Score=27.49 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=27.2
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 12 HFLLVTF-PAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
.|++.++ +..|-..=++.|++.|.++|++|.++
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~f 37 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFF 37 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 4555545 44688899999999999999999998
No 429
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=24.40 E-value=1.5e+02 Score=30.02 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCEEEEEc-C-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 10 QPHFLLVT-F-PAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 10 ~~~il~~~-~-~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
+|+|+.+. + |+-|-..-.+.||..|+.+|++|.++=
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlID 157 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVD 157 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEc
Confidence 45654444 4 889999999999999999999999983
No 430
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.33 E-value=2.2e+02 Score=21.44 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=30.8
Q ss_pred CcCHH---HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhhcCC
Q 041902 414 ILESD---EIKRCLELVMGEGDEFRGNSLKWKDLAREAAKQGGSSYKNLKAFVDDFGTSK 470 (470)
Q Consensus 414 ~~~~~---~l~~~i~~vl~~~~~~r~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 470 (470)
.++.+ .|.++.+.+...+..+.+++.++.+.. .....+..|++++.+|+
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~--------~~~~~v~~~~~Fi~~S~ 78 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEALEELEEEY--------PDSPEVREIVDFIRNSK 78 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHT--------TSCHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhc--------cCCHHHHHHHHHHHhCC
Confidence 45554 557777777753447777777776643 22467778888877764
No 431
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=24.28 E-value=1.2e+02 Score=28.64 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=28.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFA 44 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~ 44 (470)
+|.|+-=|+-|-..=++.||..|+.+|++|.++
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLli 35 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVV 35 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence 455664488899999999999999999999888
No 432
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=24.24 E-value=2.2e+02 Score=25.69 Aligned_cols=46 Identities=11% Similarity=0.125 Sum_probs=35.8
Q ss_pred CCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 8 QHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 8 ~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
.+.--+++.-.|+.|-..=++.++.....+|+.|.+++.+...+.+
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l 59 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERI 59 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHH
Confidence 3444556666688899888888888888889999999988766655
No 433
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=24.17 E-value=2.9e+02 Score=23.69 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCccchhhhcCC
Q 041902 27 ALQLARRLIRIGTRVTFATTIFAYRRMANS 56 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~ 56 (470)
...+-+.|+++|+.+.+++.......+.+.
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~ 121 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNAPTVLEK 121 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccHHHHHHh
Confidence 456778899999999999865433333255
No 434
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=24.16 E-value=2.8e+02 Score=26.84 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=38.9
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhcccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHE 357 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~ 357 (470)
++.+..|.+|+++. .+...+...|.+++..-+.. . . . .. .+.+.+..++|+.+
T Consensus 145 gktvGIiG~G~IG~-------~vA~~~~~fgm~V~~~d~~~-~-~---------~-------~~--~~~~~~l~ell~~s 197 (311)
T PRK08410 145 GKKWGIIGLGTIGK-------RVAKIAQAFGAKVVYYSTSG-K-N---------K-------NE--EYERVSLEELLKTS 197 (311)
T ss_pred CCEEEEECCCHHHH-------HHHHHHhhcCCEEEEECCCc-c-c---------c-------cc--CceeecHHHHhhcC
Confidence 45689999999882 23444455677766533221 0 0 0 01 12456889999999
Q ss_pred ccccceeccCch
Q 041902 358 AVGCFVTHCGWN 369 (470)
Q Consensus 358 ~v~~~ItHGG~g 369 (470)
|+ ++-|.=.+
T Consensus 198 Dv--v~lh~Plt 207 (311)
T PRK08410 198 DI--ISIHAPLN 207 (311)
T ss_pred CE--EEEeCCCC
Confidence 99 88886544
No 435
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=24.13 E-value=1.1e+02 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=22.3
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||+||.+.. ...+|+++|+|++.++
T Consensus 370 ~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 370 EPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred cCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 46999999953 5788999999999863
No 436
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=23.98 E-value=1.7e+02 Score=25.83 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
+|||++.-.|+.|-.+ -+.|-+.|++.|++|.++.++.....+
T Consensus 2 ~~riivgisGASG~iy-gvrlLe~L~~~~~e~hlviS~~a~~~~ 44 (191)
T COG0163 2 MKRIIVGISGASGAIY-GVRLLEVLRELGVETHLVISKAAKKTL 44 (191)
T ss_pred CcEEEEEEeccccHHH-HHHHHHHHHhcCceEEEEEcHHHHHHH
Confidence 5688888888888665 467889999999999999998776655
No 437
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=23.92 E-value=1.2e+02 Score=32.80 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=29.3
Q ss_pred cCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 7 RQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
...++|+|+++-.-.-.+.-+-....+|+++||+|+++.
T Consensus 366 ~~~~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~ 404 (652)
T PRK02122 366 LPYPKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAY 404 (652)
T ss_pred ccCCceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEE
Confidence 334467766665555577888888899999999999874
No 438
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=23.90 E-value=92 Score=24.56 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=19.1
Q ss_pred CccCH--HHHHHHHHHHHhCCCeEEEEeCc
Q 041902 20 AQGHI--NPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 20 ~~GH~--~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
...++ +|.+.|++.|.++|.+|.+.=+-
T Consensus 10 n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 10 NTDDIRESPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp TSS--TT-HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCcccccCHHHHHHHHHHHCCCEEEEECCc
Confidence 34455 89999999999999998887443
No 439
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=23.89 E-value=1.2e+02 Score=23.47 Aligned_cols=28 Identities=25% Similarity=0.259 Sum_probs=20.3
Q ss_pred EEcCCCcc--CH--HHHHHHHHHHHhCCCeEE
Q 041902 15 LVTFPAQG--HI--NPALQLARRLIRIGTRVT 42 (470)
Q Consensus 15 ~~~~~~~G--H~--~P~l~la~~L~~~Gh~V~ 42 (470)
+++.|-+| +. .-+...+++|+++||+|.
T Consensus 2 YIaGPmtG~~~~N~~~f~~~a~~L~~~G~~vv 33 (92)
T PF14359_consen 2 YIAGPMTGLPDYNRPAFNAAAKRLRAKGYEVV 33 (92)
T ss_pred eEeCCcCCCcchHHHHHHHHHHHHHHCCCEEe
Confidence 45666666 44 336788999999998875
No 440
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=23.87 E-value=1.9e+02 Score=22.03 Aligned_cols=39 Identities=15% Similarity=0.003 Sum_probs=30.2
Q ss_pred CEEEEEcCCCcc----CHHHHHHHHHHHHhCCCeEEEEeCccc
Q 041902 11 PHFLLVTFPAQG----HINPALQLARRLIRIGTRVTFATTIFA 49 (470)
Q Consensus 11 ~~il~~~~~~~G----H~~P~l~la~~L~~~Gh~V~~~~~~~~ 49 (470)
..|-+-|+.+.| +.+.+-.|-..|++.||+|.+.-+.++
T Consensus 7 V~iryGPY~a~glv~hrt~RL~GLqa~L~~dGh~v~L~~~~d~ 49 (88)
T PF15092_consen 7 VTIRYGPYSACGLVEHRTFRLEGLQAVLAKDGHEVILEKIEDW 49 (88)
T ss_pred EEEEecCchhhCeeeehHHHHHHHHHHHHhCCcEEEEEEeccc
Confidence 455566666666 568889999999999999999866643
No 441
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=23.85 E-value=1.1e+02 Score=29.83 Aligned_cols=39 Identities=15% Similarity=-0.032 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc-cchhhh
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI-FAYRRM 53 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~-~~~~~v 53 (470)
.|||.|+-.|..| ..+|..|.++||+|++.... ...+.+
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~~~~~~~i 43 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARRPEFAAAL 43 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 5799999777777 46788899999999999774 333444
No 442
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=23.83 E-value=1.7e+02 Score=28.49 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=48.0
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEee
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVP 346 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~ 346 (470)
+.+.+++...+.++++.|+ |.... + ...+.+...|+.. ..+.+..... + + ..-+.+.+- ..
T Consensus 12 ~~l~~~~~~~g~~~~liv~-~~~~~-~-~~~~~v~~~l~~~-~~~~~~~~~~-~-~------p~~~~v~~~-------~~ 72 (332)
T cd07766 12 EKIGEEIKRGGFDRALVVS-DEGVV-K-GVGEKVADSLKKL-IAVHIFDGVG-P-N------PTFEEVKEA-------VE 72 (332)
T ss_pred HHHHHHHHhcCCCeEEEEe-CCchh-h-hHHHHHHHHHHhc-CcEEEeCCcC-C-C------cCHHHHHHH-------HH
Confidence 4555556544434466666 43332 2 5667778888776 5554433222 1 0 111111100 00
Q ss_pred ccChhhhccccccccceeccCchhhhhh-----hhc--CCcEeeccccc
Q 041902 347 WCSQVEVLSHEAVGCFVTHCGWNSSLES-----LVC--GVPVVAFPQWT 388 (470)
Q Consensus 347 ~vp~~~vl~~~~v~~~ItHGG~gt~~ea-----l~~--GvP~v~~P~~~ 388 (470)
.+-. ..+++ +|.=|| ||++.. ..+ |+|++++|...
T Consensus 73 ~~~~----~~~d~--IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt~ 114 (332)
T cd07766 73 RARA----AEVDA--VIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTTA 114 (332)
T ss_pred HHHh----cCcCE--EEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 0000 24666 888877 554443 333 99999999763
No 443
>PRK04946 hypothetical protein; Provisional
Probab=23.77 E-value=1e+02 Score=27.24 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccCh-hhhccccccccceeccCchhhh
Q 041902 296 QVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQ-VEVLSHEAVGCFVTHCGWNSSL 372 (470)
Q Consensus 296 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~-~~vl~~~~v~~~ItHGG~gt~~ 372 (470)
.+..++..+...+.+-+.++-.. +.. .+-.. +..|+.| ..|++.++. =-+|||.|.+.
T Consensus 111 ~L~~fl~~a~~~g~r~v~IIHGk-G~g------vLk~~----------V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 111 ELGALIAACRKEHVFCACVMHGH-GKH------ILKQQ----------TPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCC-CHh------HHHHH----------HHHHHcCCchhheeecc--CcccCCceEEE
Confidence 35666666666777655555433 322 44332 2367754 567777777 78999999764
No 444
>PRK06932 glycerate dehydrogenase; Provisional
Probab=23.45 E-value=2.9e+02 Score=26.76 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=39.7
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhcccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHE 357 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~ 357 (470)
++.+..+.+|+++ ..+...+...|.+++.. ... . . . . ....+.+..++|+.+
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~-~--------~--~--------~-~~~~~~~l~ell~~s 198 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHK-G--------A--S--------V-CREGYTPFEEVLKQA 198 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCC-c--------c--c--------c-cccccCCHHHHHHhC
Confidence 4568899999988 23445556677776543 211 0 0 0 0 012356789999999
Q ss_pred ccccceeccCchh
Q 041902 358 AVGCFVTHCGWNS 370 (470)
Q Consensus 358 ~v~~~ItHGG~gt 370 (470)
|+ ++-|.-.+.
T Consensus 199 Di--v~l~~Plt~ 209 (314)
T PRK06932 199 DI--VTLHCPLTE 209 (314)
T ss_pred CE--EEEcCCCCh
Confidence 99 888876543
No 445
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=23.30 E-value=1.2e+02 Score=30.38 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=22.7
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
..+.+.+...+.+.+++|+-+++. ....+..+...|+..+..+.+
T Consensus 38 ~~l~~~~~~~g~~~~lvv~~~~~~--~~g~~~~v~~~L~~~gi~~~~ 82 (395)
T PRK15454 38 SSCGQQAQTRGLKHLFVMADSFLH--QAGMTAGLTRSLAVKGIAMTL 82 (395)
T ss_pred HHHHHHHHhcCCCEEEEEcCcchh--hCccHHHHHHHHHHcCCeEEE
Confidence 344445544333334444433332 234566677777777766543
No 446
>PHA02518 ParA-like protein; Provisional
Probab=23.30 E-value=1.6e+02 Score=26.10 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=29.7
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 12 HFLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
.|.|... |+-|-..-...||..|+++|++|.++=.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3555544 88899999999999999999999999554
No 447
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.08 E-value=1.1e+02 Score=27.60 Aligned_cols=33 Identities=9% Similarity=-0.063 Sum_probs=23.3
Q ss_pred CCccEEEeCCCc--hhHHHHHHHcCCCeEEEechh
Q 041902 111 QPFTCLVYSLLL--PWTAEVARAYHLPSALLWIQP 143 (470)
Q Consensus 111 ~~pDlvv~d~~~--~~~~~~A~~~giP~i~~~~~~ 143 (470)
.+||+||..... .....-....++|++.+....
T Consensus 59 l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 59 LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 469999998666 345666667999999986654
No 448
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=23.07 E-value=4e+02 Score=21.41 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=48.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCcc-----------chhhhcCCCCCCCCceEEEc-CCCCCCCCCCCCCCchhhHHHHHHHh
Q 041902 27 ALQLARRLIRIGTRVTFATTIF-----------AYRRMANSPTPEDGLSFASF-SDGYDDGFNSKQNDPRRYVSEFKRRS 94 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~-----------~~~~v~~~~~~~~g~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (470)
...+.+.|+++|+.+.+++... ....+ +. .|+.+... -.. . ....+ ..
T Consensus 30 v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~----~~l~~~~~~~~~---~-~~KP~--~~--------- 89 (132)
T TIGR01662 30 VPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EE----LGVPIDVLYACP---H-CRKPK--PG--------- 89 (132)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HH----CCCCEEEEEECC---C-CCCCC--hH---------
Confidence 4567788999999999998865 22233 44 44443221 111 0 01111 11
Q ss_pred HHHHHHHHHhhh-hcCCCCccEEEeCCCchhHHHHHHHcCCCeEEE
Q 041902 95 SEALTEIITGSE-NQGAQPFTCLVYSLLLPWTAEVARAYHLPSALL 139 (470)
Q Consensus 95 ~~~~~~~~~~l~-~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~ 139 (470)
.+..+++.+. - .+-++|+.+.....-...|+..|+++|.+
T Consensus 90 --~~~~~~~~~~~~---~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~ 130 (132)
T TIGR01662 90 --MFLEALKRFNEI---DPEESVYVGDQDLTDLQAAKRAGLAFILV 130 (132)
T ss_pred --HHHHHHHHcCCC---ChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence 1222223321 1 23456766543345788999999999875
No 449
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=23.02 E-value=1.5e+02 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=29.3
Q ss_pred CEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEe
Q 041902 11 PHFLLVTFPAQGHINPAL-QLARRLIRIGTRVTFAT 45 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l-~la~~L~~~Gh~V~~~~ 45 (470)
||+|++=..-.|...-+. .||.+|.++||+|.+.-
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~d 36 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQD 36 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeee
Confidence 788888888888887766 57999999999999873
No 450
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=22.98 E-value=2.6e+02 Score=29.58 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=22.5
Q ss_pred cccccceeccCch------hhhhhhhcCCcEeecc
Q 041902 357 EAVGCFVTHCGWN------SSLESLVCGVPVVAFP 385 (470)
Q Consensus 357 ~~v~~~ItHGG~g------t~~eal~~GvP~v~~P 385 (470)
+.+ +++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 555 88888877 4789999999999985
No 451
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.98 E-value=4.9e+02 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.011 Sum_probs=18.4
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||+++.+. ....+|+++++|++.+.
T Consensus 340 ~~pdl~ig~~---~~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 340 LKPDLLIGSS---HERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HT-SEEEESH---HHHHHHHHTT--EEE-S
T ss_pred cCCCEEEech---hhHHHHHHhCCCeEEEe
Confidence 3599999994 37788899999999853
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=22.94 E-value=1.3e+02 Score=29.38 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=36.6
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
..++|+-.++.|-..=..++|++|.++|+.|.|++.+.+...+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 5677777788998887889999999999999999888776666
No 453
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=22.94 E-value=2.2e+02 Score=28.44 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=27.5
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
.++.++....+.+++..||=.++. ....++.+++.|...+..+.+
T Consensus 18 ~~l~~~~~~~g~~r~liVTd~~~~--~~g~~~~v~~~L~~~~i~~~i 62 (377)
T COG1454 18 KELGEEVKRLGAKRALIVTDRGLA--KLGLLDKVLDSLDAAGIEYEV 62 (377)
T ss_pred HHHHHHHHhcCCCceEEEECCccc--cchhHHHHHHHHHhcCCeEEE
Confidence 566666665443446666655543 345677788888887755444
No 454
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.90 E-value=1.5e+02 Score=24.78 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCeEEEEeCccch---hhhcCCCCCCCCce----EEEcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHH
Q 041902 27 ALQLARRLIRIGTRVTFATTIFAY---RRMANSPTPEDGLS----FASFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALT 99 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~~~---~~v~~~~~~~~g~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (470)
...+.+.|+++|+.+.+++..... ..+ +. .|+. .+-....... .++ ....+.
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~----~~~~~~f~~i~~~~~~~~-----~Kp-----------~~~~~~ 140 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSRERIERVL-ER----LGLDDYFDEIISSDDVGS-----RKP-----------DPDAYR 140 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HH----TTHGGGCSEEEEGGGSSS-----STT-----------SHHHHH
T ss_pred hhhhhhhcccccceeEEeecCCcccccccc-cc----cccccccccccccchhhh-----hhh-----------HHHHHH
Confidence 456788899899999999877533 233 44 3433 1111111110 111 112223
Q ss_pred HHHHhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEE
Q 041902 100 EIITGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALL 139 (470)
Q Consensus 100 ~~~~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~ 139 (470)
.+++.+.- .+-++|+.+... .....|+..|+++|.+
T Consensus 141 ~~~~~~~~---~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 141 RALEKLGI---PPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp HHHHHHTS---SGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred HHHHHcCC---CcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 33333321 345777777554 7899999999998863
No 455
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.88 E-value=2.5e+02 Score=22.47 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=37.2
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCCCCC
Q 041902 14 LLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSDGYD 73 (470)
Q Consensus 14 l~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~~~~ 73 (470)
+++...-.|-..-++..++.++++|..|..+|.......+..+ .|...+.+|++..
T Consensus 46 l~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~~~l~~~~~~----~~~~~~~~p~~~~ 101 (119)
T cd05017 46 LVIAVSYSGNTEETLSAVEQAKERGAKIVAITSGGKLLEMARE----HGVPVIIIPKGLQ 101 (119)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHH----cCCcEEECCCCCC
Confidence 3444555566667788888889999999988854433333244 5677788886644
No 456
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=22.87 E-value=1.3e+02 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=27.5
Q ss_pred EEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 14 LLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 14 l~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
.|.+. |+-|-..=...||..|+++|++|.++=.+
T Consensus 2 ~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D 36 (195)
T PF01656_consen 2 AVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLD 36 (195)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEES
T ss_pred EEEcCCCCccHHHHHHHHHhccccccccccccccC
Confidence 34444 88899999999999999999999999554
No 457
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.87 E-value=2.2e+02 Score=22.00 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
+.+|||++|..+.+--.=.-.+-+.+.++|.++.+...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45799999998776333223444555557777665543
No 458
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=22.84 E-value=1.5e+02 Score=27.33 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=29.2
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 11 PHFLLVTF-PAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 11 ~~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
|+++.++. .+.|-..=+..|+++|..+|++|.++-
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56666655 677888888999999999999999994
No 459
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=22.83 E-value=9.4e+02 Score=25.61 Aligned_cols=144 Identities=13% Similarity=0.150 Sum_probs=70.2
Q ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccc
Q 041902 279 SSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEA 358 (470)
Q Consensus 279 ~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~ 358 (470)
.+.|-|-+||.. +....+.+...|+..|.++-+.+-.. . ..|+.+.+. +-... -...+
T Consensus 410 ~~~v~i~~gs~s--d~~~~~~~~~~l~~~g~~~~~~v~sa-h--------r~~~~~~~~----------~~~~~-~~~~~ 467 (577)
T PLN02948 410 TPLVGIIMGSDS--DLPTMKDAAEILDSFGVPYEVTIVSA-H--------RTPERMFSY----------ARSAH-SRGLQ 467 (577)
T ss_pred CCeEEEEECchh--hHHHHHHHHHHHHHcCCCeEEEEECC-c--------cCHHHHHHH----------HHHHH-HCCCC
Confidence 345556666655 44566777777777776665444332 2 333333211 00000 01133
Q ss_pred cccceeccCchhhhhhhh---cCCcEeeccccch--hhHHH-HHHHhhh--cceeEe-eecCCCCcCHHHHHHHHHHHhc
Q 041902 359 VGCFVTHCGWNSSLESLV---CGVPVVAFPQWTD--QGTNA-KIIVDFC--KTGVRV-KANEEGILESDEIKRCLELVMG 429 (470)
Q Consensus 359 v~~~ItHGG~gt~~eal~---~GvP~v~~P~~~D--Q~~nA-~rl~~~~--GvG~~l-~~~~~~~~~~~~l~~~i~~vl~ 429 (470)
+ +|.-.|.-.-+-... --+|++.+|.... -...| .-+.+ . |+.+.. .. ++..+...+...|.. +.
T Consensus 468 v--~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~-~p~g~pv~~v~i--~~~~~aa~~a~~i~~-~~ 541 (577)
T PLN02948 468 V--IIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQ-MPRGVPVATVAI--GNATNAGLLAVRMLG-AS 541 (577)
T ss_pred E--EEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhc-CCCCCeEEEEec--CChHHHHHHHHHHHh-cC
Confidence 4 666666543333322 2578888887432 11111 12222 3 432211 11 123444444433322 34
Q ss_pred CCHHHHHHHHHHHHHHHHHHhc
Q 041902 430 EGDEFRGNSLKWKDLAREAAKQ 451 (470)
Q Consensus 430 ~~~~~r~~a~~~~~~~~~~~~~ 451 (470)
|+.++++.+.+++++++.+..
T Consensus 542 -~~~~~~~~~~~~~~~~~~~~~ 562 (577)
T PLN02948 542 -DPDLLDKMEAYQEDMRDMVLE 562 (577)
T ss_pred -CHHHHHHHHHHHHHHHHHHHh
Confidence 788899999888888875433
No 460
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=22.78 E-value=1.8e+02 Score=28.44 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=30.3
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
..|.+..-|+.|-..=...||..|+.+|++|.++-.+
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 3445565688888888999999999999999999554
No 461
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=22.68 E-value=1.4e+02 Score=29.58 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=22.3
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLW 313 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 313 (470)
..+.+++...+ +++++|+-++... ....+..+...|...+..+.+
T Consensus 15 ~~l~~~~~~~g-~r~lvVt~~~~~~-~~g~~~~v~~~L~~~g~~~~~ 59 (357)
T cd08181 15 EKHGEELAALG-KRALIVTGKSSAK-KNGSLDDVTKALEELGIEYEI 59 (357)
T ss_pred HHHHHHHHHcC-CEEEEEeCCchHh-hcCcHHHHHHHHHHcCCeEEE
Confidence 44445555433 3355554333221 223456677777777665543
No 462
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=22.66 E-value=1.6e+02 Score=29.49 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCEEEEEc-C-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 9 HQPHFLLVT-F-PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 9 ~~~~il~~~-~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
.+|+++.++ . |+-|-..-.+.||..|+.+|++|.++=.+
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 445655444 3 88899999999999999999999998443
No 463
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=22.56 E-value=7.7e+02 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCCEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 9 HQPHFLLVT-FPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 9 ~~~~il~~~-~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
..++|.++- .|..|. .+|..|+++||+|++....
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 346888875 566664 4678899999999999754
No 464
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.54 E-value=1.4e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc-cchhhh
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI-FAYRRM 53 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~-~~~~~v 53 (470)
.|||+++-.|+-|=+ +|-.|.+.||+|+++... ...+.+
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~~~~~~~i 41 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRDRQRLAAY 41 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEechHHHHHH
Confidence 589999999998855 456688899999999875 344545
No 465
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=22.53 E-value=1.5e+02 Score=29.46 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=24.9
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEE
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWV 314 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 314 (470)
+++.+.+...+.+.+++|+-++... ......+...|+..+..+.+.
T Consensus 12 ~~l~~~l~~~~~~~~lvv~~~~~~~--~~~~~~v~~~L~~~~~~~~~~ 57 (370)
T cd08551 12 EKLGEEIKNLGGRKALIVTDPGLVK--TGVLDKVIDSLKEAGIEVVIF 57 (370)
T ss_pred HHHHHHHHHcCCCeEEEEeCcchhh--CccHHHHHHHHHHcCCeEEEE
Confidence 4555556544334455554333222 245667778887777665543
No 466
>PRK04148 hypothetical protein; Provisional
Probab=22.45 E-value=1.8e+02 Score=24.32 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE-eCccchhhh
Q 041902 9 HQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFA-TTIFAYRRM 53 (470)
Q Consensus 9 ~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~-~~~~~~~~v 53 (470)
+.++|+.+-.| .| ..+|..|++.||+|+.+ ..+...+.+
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~~aV~~a 55 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINEKAVEKA 55 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 34788888887 54 24577888999999988 334444444
No 467
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=22.43 E-value=1.1e+02 Score=28.15 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.1
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|+++++-.+-.| ..+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 566666555544 57899999999999999544
No 468
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.42 E-value=4.6e+02 Score=23.28 Aligned_cols=62 Identities=13% Similarity=0.142 Sum_probs=40.3
Q ss_pred CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC--CEE
Q 041902 235 KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH--PFL 312 (470)
Q Consensus 235 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i 312 (470)
++.+.+.|+-.+. +++.+-+....+. +|-+|.-. . .....+..+++.++..+. ++.
T Consensus 112 G~~vi~LG~~vp~-------------------e~~v~~~~~~~pd-~v~lS~~~-~-~~~~~~~~~i~~l~~~~~~~~v~ 169 (197)
T TIGR02370 112 GFDVIDLGRDVPI-------------------DTVVEKVKKEKPL-MLTGSALM-T-TTMYGQKDINDKLKEEGYRDSVK 169 (197)
T ss_pred CcEEEECCCCCCH-------------------HHHHHHHHHcCCC-EEEEcccc-c-cCHHHHHHHHHHHHHcCCCCCCE
Confidence 6789999977665 6666666665443 66666522 2 245567888999988754 355
Q ss_pred EEEecC
Q 041902 313 WVIREH 318 (470)
Q Consensus 313 ~~~~~~ 318 (470)
+.++..
T Consensus 170 i~vGG~ 175 (197)
T TIGR02370 170 FMVGGA 175 (197)
T ss_pred EEEECh
Confidence 556544
No 469
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=22.39 E-value=3.6e+02 Score=24.65 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=37.5
Q ss_pred ccCCCCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 6 HRQHQPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 6 ~~~~~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
...+.--+++.-.|+.|-..=.+.++.+-.++|..|.|++.+...+.+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i 64 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQV 64 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHH
Confidence 344555677777799999988888888777889999999988766544
No 470
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=22.24 E-value=3.9e+02 Score=27.08 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.0
Q ss_pred cccccceeccCch------hhhhhhhcCCcEeecc
Q 041902 357 EAVGCFVTHCGWN------SSLESLVCGVPVVAFP 385 (470)
Q Consensus 357 ~~v~~~ItHGG~g------t~~eal~~GvP~v~~P 385 (470)
+.+ +++|.|-| .+++|...++|+|++-
T Consensus 64 ~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 96 (432)
T TIGR00173 64 PVA--VVCTSGTAVANLLPAVIEASYSGVPLIVLT 96 (432)
T ss_pred CEE--EEECCcchHhhhhHHHHHhcccCCcEEEEe
Confidence 555 78888776 6779999999999993
No 471
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=22.22 E-value=4.5e+02 Score=23.12 Aligned_cols=93 Identities=19% Similarity=0.081 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCeEEEEeCccc--hhhhcCCCCCCCCceEE--EcCCCCCCCCCCCCCCchhhHHHHHHHhHHHHHHHH
Q 041902 27 ALQLARRLIRIGTRVTFATTIFA--YRRMANSPTPEDGLSFA--SFSDGYDDGFNSKQNDPRRYVSEFKRRSSEALTEII 102 (470)
Q Consensus 27 ~l~la~~L~~~Gh~V~~~~~~~~--~~~v~~~~~~~~g~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (470)
...+-+.|+++|+.+.+++.... ...+.+. .|+.-+ .+- +-... ...++ ....+...+
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~----~~l~~~f~~~~-~~~~~--~~~Kp-----------~p~~~~~~~ 151 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPTPLARPLLEL----LGLAKYFSVLI-GGDSL--AQRKP-----------HPDPLLLAA 151 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH----cCcHhhCcEEE-ecCCC--CCCCC-----------ChHHHHHHH
Confidence 45667888899999999987642 2222244 343211 110 00000 01111 112223333
Q ss_pred HhhhhcCCCCccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 103 TGSENQGAQPFTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 103 ~~l~~~~~~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
+.+.. .+-++++.+-. .....+|+..|++++.+..
T Consensus 152 ~~~~~---~~~~~~~igDs-~~d~~aa~~aG~~~i~v~~ 186 (213)
T TIGR01449 152 ERLGV---APQQMVYVGDS-RVDIQAARAAGCPSVLLTY 186 (213)
T ss_pred HHcCC---ChhHeEEeCCC-HHHHHHHHHCCCeEEEEcc
Confidence 33321 22356655433 5789999999999998643
No 472
>PRK12361 hypothetical protein; Provisional
Probab=22.21 E-value=2.9e+02 Score=29.15 Aligned_cols=29 Identities=10% Similarity=0.097 Sum_probs=23.4
Q ss_pred cccccceeccCchhhhhhhh----cCCcEeecccc
Q 041902 357 EAVGCFVTHCGWNSSLESLV----CGVPVVAFPQW 387 (470)
Q Consensus 357 ~~v~~~ItHGG~gt~~eal~----~GvP~v~~P~~ 387 (470)
.++ +|.-||-||+.|++. .++|+-++|.+
T Consensus 298 ~d~--Viv~GGDGTl~ev~~~l~~~~~~lgiiP~G 330 (547)
T PRK12361 298 ADI--VIACGGDGTVTEVASELVNTDITLGIIPLG 330 (547)
T ss_pred CCE--EEEECCCcHHHHHHHHHhcCCCCEEEecCC
Confidence 345 999999999988863 47889999964
No 473
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.21 E-value=4.5e+02 Score=23.71 Aligned_cols=32 Identities=9% Similarity=-0.036 Sum_probs=24.3
Q ss_pred hhhhcCCcEeecccc-chh---hHHHHHHHhhhccee
Q 041902 373 ESLVCGVPVVAFPQW-TDQ---GTNAKIIVDFCKTGV 405 (470)
Q Consensus 373 eal~~GvP~v~~P~~-~DQ---~~nA~rl~~~~GvG~ 405 (470)
++|..++|+|+.|-. ... ..|...+.+ .|+-+
T Consensus 125 ~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~-~G~~i 160 (204)
T PRK05920 125 VVLKERRKLILVPRETPLSLIHLENMLKLAE-AGAII 160 (204)
T ss_pred HHHhcCCCEEEEeCCCCCCHHHHHHHHHHHH-CCCEE
Confidence 568899999999962 333 478888887 77765
No 474
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=22.06 E-value=5e+02 Score=23.06 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=39.6
Q ss_pred CCCeeEeccccCCCccCCcccCCCCCCCCCChhHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCC--CEE
Q 041902 235 KFNMIAIGPLVASALWDGKELYGGDLCKNSSKEYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGH--PFL 312 (470)
Q Consensus 235 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~--~~i 312 (470)
++.+.+.|.-.+. +++.+-+....+. +|.+|+-+. .....+..++..++..+. ++.
T Consensus 110 G~~vi~lG~~~p~-------------------~~l~~~~~~~~~d-~v~lS~~~~--~~~~~~~~~i~~lr~~~~~~~~~ 167 (201)
T cd02070 110 GFEVIDLGRDVPP-------------------EEFVEAVKEHKPD-ILGLSALMT--TTMGGMKEVIEALKEAGLRDKVK 167 (201)
T ss_pred CCEEEECCCCCCH-------------------HHHHHHHHHcCCC-EEEEecccc--ccHHHHHHHHHHHHHCCCCcCCe
Confidence 6788999965544 6666666664433 666654322 245668888888988765 565
Q ss_pred EEEecC
Q 041902 313 WVIREH 318 (470)
Q Consensus 313 ~~~~~~ 318 (470)
+.++..
T Consensus 168 i~vGG~ 173 (201)
T cd02070 168 VMVGGA 173 (201)
T ss_pred EEEECC
Confidence 555544
No 475
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.03 E-value=1.8e+02 Score=29.27 Aligned_cols=46 Identities=24% Similarity=0.225 Sum_probs=28.1
Q ss_pred ceeccCchhhhhhhhcCCcEeeccccc--hhhHHHHHHHhhhcceeEeee
Q 041902 362 FVTHCGWNSSLESLVCGVPVVAFPQWT--DQGTNAKIIVDFCKTGVRVKA 409 (470)
Q Consensus 362 ~ItHGG~gt~~eal~~GvP~v~~P~~~--DQ~~nA~rl~~~~GvG~~l~~ 409 (470)
..|.||.--+.|-=.+|+|.|.+-... -.-.=|.|+.. ++++-...
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~Pl 395 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPHPL 395 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCCCC
Confidence 356666666666677899998775322 23333667774 66665544
No 476
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=21.91 E-value=1.1e+02 Score=29.53 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=40.9
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccchhhhcCCCCCCCCceEEEcCC
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFAYRRMANSPTPEDGLSFASFSD 70 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~g~~~~~i~~ 70 (470)
|||.++=.|+-|=+ +|-.|.+.||+|++..-+...+.+ .+ .|+.......
T Consensus 1 mkI~IlGaGAvG~l-----~g~~L~~~g~~V~~~~R~~~~~~l-~~----~GL~i~~~~~ 50 (307)
T COG1893 1 MKILILGAGAIGSL-----LGARLAKAGHDVTLLVRSRRLEAL-KK----KGLRIEDEGG 50 (307)
T ss_pred CeEEEECCcHHHHH-----HHHHHHhCCCeEEEEecHHHHHHH-Hh----CCeEEecCCC
Confidence 78888888888854 577899999999999998888888 76 7787776654
No 477
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.85 E-value=1.8e+02 Score=29.26 Aligned_cols=42 Identities=7% Similarity=-0.015 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhhcCCCCccEEEeCCCch-------hH---HHHHHHcCCCeEEE
Q 041902 95 SEALTEIITGSENQGAQPFTCLVYSLLLP-------WT---AEVARAYHLPSALL 139 (470)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~pDlvv~d~~~~-------~~---~~~A~~~giP~i~~ 139 (470)
++..+++++-++. .+||++|+.+.|- ++ ..+.+++|||.++-
T Consensus 62 eea~~~i~~mv~k---~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 62 EEAKAKVLEMIKG---ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHHh---cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3333444444444 5699999987552 11 22355699999974
No 478
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=21.85 E-value=1.7e+02 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.363 Sum_probs=26.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEE
Q 041902 13 FLLVTFPAQGHINPALQLARRLIRIGTR-VTFA 44 (470)
Q Consensus 13 il~~~~~~~GH~~P~l~la~~L~~~Gh~-V~~~ 44 (470)
|+|.-.|..|-......|.++|+++||+ ++.+
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~i 36 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRI 36 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEE
Confidence 4555569999999999999999999986 4333
No 479
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=21.81 E-value=2.4e+02 Score=25.78 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=29.2
Q ss_pred cccccCCCCEEEEEcCCCc-cCH-HHHHHHHHHHHh-CCCeEEEEe
Q 041902 3 QEQHRQHQPHFLLVTFPAQ-GHI-NPALQLARRLIR-IGTRVTFAT 45 (470)
Q Consensus 3 ~~~~~~~~~~il~~~~~~~-GH~-~P~l~la~~L~~-~Gh~V~~~~ 45 (470)
+.+|+.+.|||++++.... |=. ..++..+.+... .|.+|.++-
T Consensus 19 ~~~~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~id 64 (219)
T TIGR02690 19 SATHKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFD 64 (219)
T ss_pred CCCCCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeC
Confidence 4578999999999988655 333 345555544444 688888774
No 480
>PRK09271 flavodoxin; Provisional
Probab=21.80 E-value=1.7e+02 Score=25.01 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=28.5
Q ss_pred CEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEe
Q 041902 11 PHFLLVTFPAQGHINPAL-QLARRLIRIGTRVTFAT 45 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l-~la~~L~~~Gh~V~~~~ 45 (470)
|||+++-...+|+.--+. .|++.|..+|++|.+.-
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~ 36 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVE 36 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEe
Confidence 788888888999987766 46888999999997653
No 481
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=21.77 E-value=6.1e+02 Score=24.20 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.3
Q ss_pred EEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 12 HFLLVTF-PAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 12 ~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
+|++.+. ++-|--.-...||..|++.|.+|-++=.+
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~D 85 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDAD 85 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeec
Confidence 4455555 77799999999999999999999998433
No 482
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=21.72 E-value=1.1e+02 Score=29.60 Aligned_cols=43 Identities=9% Similarity=-0.060 Sum_probs=30.9
Q ss_pred CEEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCccchhhh
Q 041902 11 PHFLLVTFPAQ---GHINPALQLARRLIRIGTRVTFATTIFAYRRM 53 (470)
Q Consensus 11 ~~il~~~~~~~---GH~~P~l~la~~L~~~Gh~V~~~~~~~~~~~v 53 (470)
|||.|+.-|-. -+..-.+.|..+.++|||+|.++.+.+..-..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~~~~ 46 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLSVVN 46 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheEEEC
Confidence 67777764322 13345778999999999999999887665443
No 483
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=21.65 E-value=5.7e+02 Score=25.36 Aligned_cols=136 Identities=8% Similarity=0.008 Sum_probs=66.6
Q ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhccccccccceeccCchhhhhhhhc
Q 041902 298 EEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHEAVGCFVTHCGWNSSLESLVC 377 (470)
Q Consensus 298 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~~v~~~ItHGG~gt~~eal~~ 377 (470)
..+...+.....++|..+... .+..+++-.+...+++.. ....+..+-++.-++.+|.++..-.-.-
T Consensus 114 ~~l~~~i~~~pKPVIAAVnG~----------AiGGGleLALaCDlrIAs---e~A~Fg~PE~rlGl~P~~Ggt~rLprlv 180 (360)
T TIGR03200 114 NDMVSAILGCDKPVICRVNGM----------RIGGGQEIGMAADFTIAQ---DLANFGQAGPKHGSAPIGGATDFLPLMI 180 (360)
T ss_pred HHHHHHHHhCCCCEEEEECCE----------eeeHHHHHHHhCCEEEEc---CCCEEeCchhccCCCCCccHHHHHHHhh
Confidence 445667777788888877654 333344334445555542 1222222322224555554443222222
Q ss_pred CCcEeeccccchhhHHHHHHHhhhcceeEeeecC--------CCCcCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 041902 378 GVPVVAFPQWTDQGTNAKIIVDFCKTGVRVKANE--------EGILESDEIKRCLELVMGEGDEFRGNSLKWKDLARE 447 (470)
Q Consensus 378 GvP~v~~P~~~DQ~~nA~rl~~~~GvG~~l~~~~--------~~~~~~~~l~~~i~~vl~~~~~~r~~a~~~~~~~~~ 447 (470)
|.....-=+..-+.+.|....+ +|+--.+-+.. ......+...+.+.+++.+++..-+.++..++.++.
T Consensus 181 G~~rA~~llltGe~~sA~EA~~-~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 181 GCEQAMVSGTLCEPWSAHKAKR-LGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred CHHHHHHHHHhCCcCcHHHHHH-cCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 2211000011224667777776 77655553211 122334566666666666354454577777777765
No 484
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=21.60 E-value=1.6e+02 Score=25.71 Aligned_cols=104 Identities=12% Similarity=-0.022 Sum_probs=50.8
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEE-eCccchhhh--cCCCCCCCCceEEEcCCCCCCCCCCCCCCchh
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTR--VTFA-TTIFAYRRM--ANSPTPEDGLSFASFSDGYDDGFNSKQNDPRR 85 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~--V~~~-~~~~~~~~v--~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~ 85 (470)
|||+|+..++. .-+..+..+|.+++|+ |.++ +.++..... ... .++....+.... . ..
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~----~~~~~~~~~~~~---------~-~~ 63 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK----NGIPAQVADEKN---------F-QP 63 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH----TTHHEEEHHGGG---------S-SS
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc----CCCCEEeccccC---------C-Cc
Confidence 79998866655 4455667789999997 4444 333322211 011 223332222110 0 00
Q ss_pred hHHHHHHHhHHHHHHHHHhhhhcCCCCccEEEeCCCc-hhHHHHHHHcCCCeEEEech
Q 041902 86 YVSEFKRRSSEALTEIITGSENQGAQPFTCLVYSLLL-PWTAEVARAYHLPSALLWIQ 142 (470)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~pDlvv~d~~~-~~~~~~A~~~giP~i~~~~~ 142 (470)
...... ++.+.+.+ .+||++|+-.+. .....+-......++-++++
T Consensus 64 -----~~~~~~---~~~~~l~~---~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 64 -----RSENDE---ELLELLES---LNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp -----HHHHHH---HHHHHHHH---TT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred -----hHhhhh---HHHHHHHh---hccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 011122 23333333 569999887553 34455556677777777654
No 485
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.53 E-value=1.7e+02 Score=21.90 Aligned_cols=55 Identities=11% Similarity=0.108 Sum_probs=35.6
Q ss_pred EEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC-ccchhhhcCCCCCCCCceEEEc
Q 041902 12 HFLLVTFPAQ--GHINPALQLARRLIRIGTRVTFATT-IFAYRRMANSPTPEDGLSFASF 68 (470)
Q Consensus 12 ~il~~~~~~~--GH~~P~l~la~~L~~~Gh~V~~~~~-~~~~~~v~~~~~~~~g~~~~~i 68 (470)
+++++|.... .+..-...++..|++.|..|.+-.. ......+ +.... .|+.|.-+
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i-~~a~~-~g~~~~ii 60 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKF-ADADL-IGIPYRIV 60 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccch-hHHHh-cCCCEEEE
Confidence 5778886643 4566788999999999999988543 2333333 21111 57777655
No 486
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=21.52 E-value=2e+02 Score=27.17 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCccc
Q 041902 12 HFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTIFA 49 (470)
Q Consensus 12 ~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~~ 49 (470)
.|+|+..++-|-..=+..||..|+..|++|.++..+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45566668889999999999999999999999987754
No 487
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=21.49 E-value=1.5e+02 Score=31.08 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=23.0
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEec
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLWI 141 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~~ 141 (470)
.+||+||.+. ....+|+++|||++.++.
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 4699999995 467789999999998643
No 488
>PLN02880 tyrosine decarboxylase
Probab=21.47 E-value=1.4e+02 Score=31.08 Aligned_cols=70 Identities=7% Similarity=0.035 Sum_probs=44.5
Q ss_pred cccceeccCchhhhhhhhcCC------------cEeeccccchhhHHHHHHHhhhcce----eEeeecC--CCCcCHHHH
Q 041902 359 VGCFVTHCGWNSSLESLVCGV------------PVVAFPQWTDQGTNAKIIVDFCKTG----VRVKANE--EGILESDEI 420 (470)
Q Consensus 359 v~~~ItHGG~gt~~eal~~Gv------------P~v~~P~~~DQ~~nA~rl~~~~GvG----~~l~~~~--~~~~~~~~l 420 (470)
.+++++.||..+.+.||.... +.+++-...+-++--.+..+++|+| +.+..+. ...++.+.|
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L 226 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELL 226 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHH
Confidence 346899999998888875432 2222222233356555565579998 3444421 246899999
Q ss_pred HHHHHHHh
Q 041902 421 KRCLELVM 428 (470)
Q Consensus 421 ~~~i~~vl 428 (470)
.++|++..
T Consensus 227 ~~~i~~~~ 234 (490)
T PLN02880 227 SEAISTDL 234 (490)
T ss_pred HHHHHHHH
Confidence 99998754
No 489
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.42 E-value=1.3e+02 Score=27.76 Aligned_cols=37 Identities=5% Similarity=-0.140 Sum_probs=0.0
Q ss_pred HHhhhhcCCCCccEEEeCCCchh---HHHHHHHcCCCeEEEec
Q 041902 102 ITGSENQGAQPFTCLVYSLLLPW---TAEVARAYHLPSALLWI 141 (470)
Q Consensus 102 ~~~l~~~~~~~pDlvv~d~~~~~---~~~~A~~~giP~i~~~~ 141 (470)
++.+.+ .+||+||....... ...+.+.+|+|++.+..
T Consensus 67 ~E~i~~---l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 67 YEKIAA---LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHHh---cCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
No 490
>PRK13236 nitrogenase reductase; Reviewed
Probab=21.40 E-value=1.5e+02 Score=28.30 Aligned_cols=35 Identities=9% Similarity=0.074 Sum_probs=29.1
Q ss_pred CEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 11 PHFLLVTF-PAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 11 ~~il~~~~-~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
||++-+.. |+-|-.+-.+.||..|+++|++|.++=
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45555544 778899999999999999999999993
No 491
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.37 E-value=1.4e+02 Score=27.40 Aligned_cols=36 Identities=19% Similarity=0.074 Sum_probs=29.4
Q ss_pred EEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeCcc
Q 041902 13 FLLVT-FPAQGHINPALQLARRLIRIGTRVTFATTIF 48 (470)
Q Consensus 13 il~~~-~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~~ 48 (470)
|.|.+ -|+-|-..=.+.||..|+++|++|.++=.+.
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 44444 3888999999999999999999999995543
No 492
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.35 E-value=1.4e+02 Score=31.22 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=22.2
Q ss_pred CCccEEEeCCCchhHHHHHHHcCCCeEEEe
Q 041902 111 QPFTCLVYSLLLPWTAEVARAYHLPSALLW 140 (470)
Q Consensus 111 ~~pDlvv~d~~~~~~~~~A~~~giP~i~~~ 140 (470)
.+||+||.+. ....+|+++|||++.++
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4699999884 46779999999999864
No 493
>PRK06756 flavodoxin; Provisional
Probab=21.32 E-value=1.7e+02 Score=24.42 Aligned_cols=36 Identities=6% Similarity=0.161 Sum_probs=29.0
Q ss_pred CEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEeC
Q 041902 11 PHFLLVTFPAQGHINPAL-QLARRLIRIGTRVTFATT 46 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l-~la~~L~~~Gh~V~~~~~ 46 (470)
|+|+++-...+||.--+. .|++.|.++|++|.+.-.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 688888888899997765 568889899999987643
No 494
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=21.30 E-value=3.5e+02 Score=27.06 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=38.4
Q ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEeeccChhhhcccc
Q 041902 278 KSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVPWCSQVEVLSHE 357 (470)
Q Consensus 278 ~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~~vp~~~vl~~~ 357 (470)
++.+-.|.+|.++ ..+...+...|.+++..-+.. . . ... ...+.+..++++.|
T Consensus 116 gktvGIIG~G~IG-------~~vA~~l~a~G~~V~~~dp~~---~------~---------~~~--~~~~~~L~ell~~s 168 (378)
T PRK15438 116 DRTVGIVGVGNVG-------RRLQARLEALGIKTLLCDPPR---A------D---------RGD--EGDFRSLDELVQEA 168 (378)
T ss_pred CCEEEEECcCHHH-------HHHHHHHHHCCCEEEEECCcc---c------c---------ccc--ccccCCHHHHHhhC
Confidence 4558889999988 334555666777776532211 0 0 000 12467888999999
Q ss_pred ccccceeccCc
Q 041902 358 AVGCFVTHCGW 368 (470)
Q Consensus 358 ~v~~~ItHGG~ 368 (470)
|+ ++-|.-.
T Consensus 169 Di--I~lh~PL 177 (378)
T PRK15438 169 DI--LTFHTPL 177 (378)
T ss_pred CE--EEEeCCC
Confidence 99 8866653
No 495
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=21.30 E-value=2.9e+02 Score=26.20 Aligned_cols=92 Identities=17% Similarity=0.236 Sum_probs=56.5
Q ss_pred hHHHHhhccCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCCCCCCCCCchhhhHHHHHHhCCCeEEee
Q 041902 267 EYYMEWLSSKPKSSVIYVAFGTICVLEKRQVEEIARGLLDSGHPFLWVIREHENKDKDKGEDDVVMKYKEELNEKGMIVP 346 (470)
Q Consensus 267 ~~~~~~l~~~~~~~vV~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~v~~ 346 (470)
+...+++.+ .+.++|+++|+.. .....+...|...|.++...-..+ ..
T Consensus 121 ~~av~~L~~--A~rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~----------~~---------------- 168 (281)
T COG1737 121 ERAVELLAK--ARRIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTH----------GQ---------------- 168 (281)
T ss_pred HHHHHHHHc--CCeEEEEEechhH----HHHHHHHHHHHHcCCceeEecchH----------HH----------------
Confidence 344556654 3457888887755 334456667777777766644332 11
Q ss_pred ccChhhhccccccccceeccCch-----hhhhhhhcCCcEeeccccchhh
Q 041902 347 WCSQVEVLSHEAVGCFVTHCGWN-----SSLESLVCGVPVVAFPQWTDQG 391 (470)
Q Consensus 347 ~vp~~~vl~~~~v~~~ItHGG~g-----t~~eal~~GvP~v~~P~~~DQ~ 391 (470)
+ .+...+...|+-.+|+|.|.. .+..|-..|+|+|++--..+-+
T Consensus 169 ~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~sp 217 (281)
T COG1737 169 L-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSP 217 (281)
T ss_pred H-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCc
Confidence 1 134445556666688998876 4556678999999996544433
No 496
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=21.24 E-value=1.2e+02 Score=29.50 Aligned_cols=32 Identities=16% Similarity=0.073 Sum_probs=23.4
Q ss_pred CEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCc
Q 041902 11 PHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATTI 47 (470)
Q Consensus 11 ~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~~ 47 (470)
|||+|+-.+..+ +...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 789998665543 55567788899999877653
No 497
>PLN02240 UDP-glucose 4-epimerase
Probab=21.21 E-value=1.5e+02 Score=28.83 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 041902 10 QPHFLLVTFPAQGHINPALQLARRLIRIGTRVTFATT 46 (470)
Q Consensus 10 ~~~il~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~~ 46 (470)
.++|++ +|+.|.+-. .|++.|.++||+|+.+..
T Consensus 5 ~~~vlI--tGatG~iG~--~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILV--TGGAGYIGS--HTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEE--ECCCChHHH--HHHHHHHHCCCEEEEEeC
Confidence 346554 467777754 457889999999998853
No 498
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.20 E-value=2.1e+02 Score=25.51 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=29.6
Q ss_pred CCEEEEEcC--CCccCHHHHHHHHHHHHh-CCCeEEEEeCc
Q 041902 10 QPHFLLVTF--PAQGHINPALQLARRLIR-IGTRVTFATTI 47 (470)
Q Consensus 10 ~~~il~~~~--~~~GH~~P~l~la~~L~~-~Gh~V~~~~~~ 47 (470)
+++++.++. ++-|-..=...||..|+. .|++|.++=..
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 456555553 788888889999999996 69999998443
No 499
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=21.16 E-value=1.8e+02 Score=23.52 Aligned_cols=32 Identities=19% Similarity=0.088 Sum_probs=26.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 041902 14 LLVTFPAQGHINPALQLARRLIRIGTRVTFAT 45 (470)
Q Consensus 14 l~~~~~~~GH~~P~l~la~~L~~~Gh~V~~~~ 45 (470)
+++..|..++-.-+..+++.|+++|+.|....
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~ 33 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFD 33 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 56667777777778999999999999998883
No 500
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.11 E-value=1.5e+02 Score=27.55 Aligned_cols=38 Identities=21% Similarity=0.175 Sum_probs=29.5
Q ss_pred CEE-EEEcC-CCccCHHHHHHHHHHHH-hCCCeEEEEeCcc
Q 041902 11 PHF-LLVTF-PAQGHINPALQLARRLI-RIGTRVTFATTIF 48 (470)
Q Consensus 11 ~~i-l~~~~-~~~GH~~P~l~la~~L~-~~Gh~V~~~~~~~ 48 (470)
|+| .|+.. |+-|-..=.+.||..|+ .+||+|.++=-+.
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDp 42 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDP 42 (259)
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 444 44444 88899999999999999 6679999994443
Done!