BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041904
(317 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana
GN=UBP12 PE=1 SV=2
Length = 1116
Score = 73.2 bits (178), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 15/142 (10%)
Query: 172 DPPTYYHTWKVSNFSSLLDEFYESESF--GCYKWYANYSMDVKILLYPNGNGEAKGNCIS 229
DPPT TW + NFS + S+ F G YKW +IL++P GN + +S
Sbjct: 51 DPPTLKFTWTIPNFSRQNTRKHYSDVFVVGGYKW--------RILIFPKGNNV---DHLS 99
Query: 230 LFLDVSQS-SIPPNTKLLTKYFLCVENQMNGKNS-EVEGEWLYTLTNRAIGGRQFMTLAK 287
++LDVS + S+P ++ L V NQ++ + + E + + G FM L++
Sbjct: 100 MYLDVSDAASLPYGWSRYAQFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSE 159
Query: 288 LKDPTEGYLVDDSCIIKAEVTL 309
L DP+ GYLV+D+ +++AEV +
Sbjct: 160 LYDPSRGYLVNDTVLVEAEVAV 181
Score = 70.5 bits (171), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 29 LSKASVEQLILDNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVNAI 88
S+ + + D F GGYKW++ I G N DH+S+YL++++ +SLP GW A
Sbjct: 64 FSRQNTRKHYSDVFVVGGYKWRILIFPKG----NNVDHLSMYLDVSDAASLPYGWSRYA- 118
Query: 89 TISFYSIKFKTNILVSKVRNSTINVIVKH-FHAMKSKYGVAKFIDLKTFSDPLNGYLIND 147
+F ++ T+ +H F+A +S +G F+ L DP GYL+ND
Sbjct: 119 -------QFSLAVVNQIHTRYTVRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLVND 171
Query: 148 ACVFGAEVFVVK 159
+ AEV V K
Sbjct: 172 TVLVEAEVAVRK 183
>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana
GN=UBP13 PE=1 SV=1
Length = 1115
Score = 71.6 bits (174), Expect = 6e-12, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 15/142 (10%)
Query: 172 DPPTYYHTWKVSNFSSLLDEFYESESF--GCYKWYANYSMDVKILLYPNGNGEAKGNCIS 229
DPP+ TW + F+ L + S+ F G YKW +IL++P GN + +S
Sbjct: 50 DPPSLKFTWTIPMFTRLNTRKHYSDVFVVGGYKW--------RILIFPKGNNV---DHLS 98
Query: 230 LFLDVSQSS-IPPNTKLLTKYFLCVENQMNGKNS-EVEGEWLYTLTNRAIGGRQFMTLAK 287
++LDV+ ++ +P +++ L V NQ+N + S E + + G FM L++
Sbjct: 99 MYLDVADAANLPYGWSRYSQFSLAVVNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSE 158
Query: 288 LKDPTEGYLVDDSCIIKAEVTL 309
L +PT GYLV+D+ +I+AEV +
Sbjct: 159 LYEPTRGYLVNDTVLIEAEVAV 180
Score = 70.1 bits (170), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 15/122 (12%)
Query: 40 DNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVNAITISFYSIKFKT 99
D F GGYKW++ I G N DH+S+YL++A+ ++LP GW S YS +F
Sbjct: 74 DVFVVGGYKWRILIFPKG----NNVDHLSMYLDVADAANLPYGW-------SRYS-QFSL 121
Query: 100 NILVSKVRNS-TINVIVKH-FHAMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFV 157
+ V++V N +I +H F+A +S +G F+ L +P GYL+ND + AEV V
Sbjct: 122 AV-VNQVNNRYSIRKETQHQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAV 180
Query: 158 VK 159
K
Sbjct: 181 RK 182
>sp|Q8RY18|Y5436_ARATH MATH domain-containing protein At5g43560 OS=Arabidopsis thaliana
GN=At5g43560 PE=1 SV=1
Length = 1055
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 18/140 (12%)
Query: 21 FKIESFSLLSKASVEQLILDNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLP 80
+ IE FS ++K +L D FE GGYKW + I+ G +V +H+S++L +A L
Sbjct: 73 WTIEKFSDINK---RELRGDVFEVGGYKWYILIYPQG---CDVCNHLSLFLCVAHHEKLL 126
Query: 81 TGWEVNAITISFYSIKFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTFSDPL 140
GW + +F + + S + + F + +G KFI+L +
Sbjct: 127 PGWS--------HFAQFTIAVSNKDPKKSKHSDTLHRFWKKEHDWGWKKFIELPKLKE-- 176
Query: 141 NGYLINDACV-FGAEVFVVK 159
G++ + C+ A+V V++
Sbjct: 177 -GFIDDSGCLTIKAQVQVIR 195
>sp|Q8T126|FNKC_DICDI Probable inactive serine/threonine-protein kinase fnkC
OS=Dictyostelium discoideum GN=fnkC PE=3 SV=1
Length = 1304
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 25 SFSLLSKASVEQLILDNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWE 84
S ++SK S E I F + G KW + I+ G S N ++S++LE + G E
Sbjct: 1178 SVPMMSKKS-EPFISPIFMSCGRKWIIKIYPMGQPSSN---YMSVFLEYRDE-----GEE 1228
Query: 85 VNAITISFYSIKFKTNILVSKVRNSTINVIVKH-FHAMKSKYGVAKFIDLKTFSDPLNGY 143
++ F ++ +I V++ F++ + +G KFI + T DP G+
Sbjct: 1229 ---------NVHFSLELISQLYPEQSIKYWVQYRFNSKSNSFGYPKFIGVSTLMDPDMGF 1279
Query: 144 LINDACVFGAEVFVVK 159
L+ND + + +K
Sbjct: 1280 LVNDTIILNVSILQLK 1295
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 56/275 (20%), Positives = 115/275 (41%), Gaps = 39/275 (14%)
Query: 42 FEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVNAITISF-YSIKFKTN 100
F G W+ + G K + + +SI++ + + N TI SI +K
Sbjct: 1047 FSLIGSNWRCKFYSNG-KDASTSGKLSIFISNCDLLN-------NPFTIFLEKSISYKLT 1098
Query: 101 ILVSKVRNSTINVIVKHFHAMKS-KYGVAKFIDLKTFSDPLNGYLINDAC---VFGAEVF 156
++ K N +I H ++K +G FI L + +P NG+L+N+ + A
Sbjct: 1099 LINQKNPNESIQKSSSHTFSIKEFNHGYGSFIGLFSLLNPNNGFLVNNTIKVRIDAAPTS 1158
Query: 157 VVKNTFKGECLSMMHDPPTYYHTWKVSNFSSLLDEFYESESFGC-YKWYANYSMDVKILL 215
+ NT+ + + ++ V S + F C KW I +
Sbjct: 1159 PLVNTYDKYNIGLNQ-----AFSYSVPMMSKKSEPFISPIFMSCGRKWI--------IKI 1205
Query: 216 YPNGNGEAKGNCISLFL---DVSQSSIPPNTKLLTKYFLCVENQMNGKNSEVEGEWLYTL 272
YP G + N +S+FL D + ++ + +L+++ + ++ + ++ +
Sbjct: 1206 YPMG--QPSSNYMSVFLEYRDEGEENVHFSLELISQLY-------PEQSIKYWVQYRFNS 1256
Query: 273 TNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEV 307
+ + G +F+ ++ L DP G+LV+D+ I+ +
Sbjct: 1257 KSNSFGYPKFIGVSTLMDPDMGFLVNDTIILNVSI 1291
>sp|P41886|BAT41_CAEEL BTB and MATH domain-containing protein 41 OS=Caenorhabditis elegans
GN=bath-41 PE=1 SV=1
Length = 418
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 9/148 (6%)
Query: 166 CLSMMHDPPTYYHTWKVSNFSSLLDEFYESESFGCYKWYANYSMDVKILLYPNGNGEAKG 225
C ++M++ ++ + W V F+ L E + F + + + + L+PNG E
Sbjct: 37 CRTVMNER-SFTNYWSVERFTVQL-ELHNPAEFMLAPKFGDGDYEFVMKLFPNGKDEETA 94
Query: 226 NCISLFLDVSQSSIPPNTKLLTKYFLCVENQMNGKNSEVEGEWLYTLTNRA--IGGRQFM 283
+SLFL +++ PN +L + VE +G S + L T+ NR+ + +F
Sbjct: 95 GYLSLFLLINKC---PNPRLRFRVSFTVETA-DGPRSCHLNKNLVTI-NRSGIVTASKFF 149
Query: 284 TLAKLKDPTEGYLVDDSCIIKAEVTLHG 311
+L L+ Y+ +D I E+T+ G
Sbjct: 150 SLDILRSAMNVYIPNDILTIGCELTIFG 177
>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans
GN=bath-43 PE=3 SV=2
Length = 451
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 18 HYLFKIESFSLLSKASVEQLILDNFEAG---GYKWKLSIHLTGSKSVNVTDHISIYLELA 74
+Y++ I +FS + E L F AG KW L I+ G + D++S+YL L
Sbjct: 97 NYMWTINNFSFCREEMGEVLKSSTFSAGCNDKLKWCLRINPKGLDEES-RDYLSLYLLLV 155
Query: 75 ETSSLPTGWEVNAITISFYSIKFKTNILVSKVRNSTINVIVKHFHAMKSK-YGVAKFIDL 133
+ + EV A KFK +IL +K + + + ++ K +G KFI
Sbjct: 156 QCNK----SEVRA--------KFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRR 203
Query: 134 KTFSDPLNGYLINDACVFGAEVFVVKNT 161
D NG L D EV VV T
Sbjct: 204 DFLLDEANGLLPGDRLSIFCEVSVVAET 231
>sp|Q5VRH4|HGD_ORYSJ Homogentisate 1,2-dioxygenase OS=Oryza sativa subsp. japonica
GN=HGO PE=2 SV=1
Length = 470
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 28/137 (20%)
Query: 80 PTGWEVNAITISFYSI--KFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTF- 136
PT W + Y+I K+ + + S NV+ H + + KY ++KF T
Sbjct: 252 PTAW-FEQVHRPGYTIVQKYGGELFTATQDFSPFNVVAWHGNYVPYKYDLSKFCPFNTVL 310
Query: 137 ---SDP-----------LNGYLINDACVFGAEVFVVKNTFKGECLSMMHDPPTYYHTWKV 182
+DP G + D +F V +NTF+ P YYH +
Sbjct: 311 FDHADPSVNTVLTAPTDKPGVALLDFVIFPPRWLVAENTFR----------PPYYHRNCM 360
Query: 183 SNFSSLLDEFYESESFG 199
S F L+ YE+++ G
Sbjct: 361 SEFMGLIYGIYEAKADG 377
>sp|Q9VKJ0|HGD_DROME Homogentisate 1,2-dioxygenase OS=Drosophila melanogaster GN=hgo
PE=1 SV=3
Length = 439
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 26/136 (19%)
Query: 80 PTGWEVNAITISFYSI-KFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTFS- 137
P W + F I KF+ + V+K ++ +V+ H + + KY ++KF+ + + S
Sbjct: 231 PVAWFDDRDVKDFQVISKFQGRLFVAKQNHTVFDVVAWHGNYVPFKYDLSKFMVINSVSF 290
Query: 138 ---DP-----------LNGYLINDACVFGAEVFVVKNTFKGECLSMMHDPPTYYHTWKVS 183
DP G I D +F V ++TF+ P YYH +S
Sbjct: 291 DHCDPSIFTVLTCPSLRAGTAIADFVIFPPRWSVQEHTFR----------PPYYHRNCMS 340
Query: 184 NFSSLLDEFYESESFG 199
F L+ YE++ G
Sbjct: 341 EFMGLILGKYEAKEDG 356
>sp|Q9ZRA2|HGD_ARATH Homogentisate 1,2-dioxygenase OS=Arabidopsis thaliana GN=HGO PE=2
SV=2
Length = 461
Score = 35.0 bits (79), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 26/136 (19%)
Query: 80 PTGWEVNAITISFYSI-KFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTF-- 136
PT W + + + + KF + +K S NV+ H + + KY + KF T
Sbjct: 237 PTAWFEDGLRPEYTIVQKFGGELFTAKQDFSPFNVVAWHGNYVPYKYDLKKFCPYNTVLL 296
Query: 137 --SDP-----------LNGYLINDACVFGAEVFVVKNTFKGECLSMMHDPPTYYHTWKVS 183
DP G + D +F V ++TF+ P YYH +S
Sbjct: 297 DHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFR----------PPYYHRNCMS 346
Query: 184 NFSSLLDEFYESESFG 199
F L+ YE+++ G
Sbjct: 347 EFMGLIYGAYEAKADG 362
>sp|Q86KX6|Y2348_DICDI TNF receptor-associated factor family protein DDB_G0272348
OS=Dictyostelium discoideum GN=DDB_G0272348 PE=3 SV=2
Length = 595
Score = 35.0 bits (79), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 36/159 (22%)
Query: 169 MMHDPPT--------YYHTWKVSNFSSLLDEFYESESFGCYKWYANYSMDVKILLYPNGN 220
M D P Y + W +SN+S E E G K Y +K L+ GN
Sbjct: 442 QMSDSPNGGSLPQAVYKNKWVISNYS-------EQEQQGISKDY------IKSPLFKIGN 488
Query: 221 ----------GEAKGNCISLFLDVSQSSIPPNTKLLTKYFLCVENQMNGKNSEVEGEWLY 270
G+ K N S+FL +Q + ++ Y V NQ++ + E G Y
Sbjct: 489 STFFLKWFPFGKKKLNYCSIFLYKTQDD---KSIIVNYYIHLVNNQISDEVYEKRGCQKY 545
Query: 271 TLTNRAIG--GRQFMTLAKLKDPTEGYLVDDSCIIKAEV 307
N + G QF+ A L + G+L++DS I+ E+
Sbjct: 546 DSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEI 584
>sp|P39428|TRAF1_MOUSE TNF receptor-associated factor 1 OS=Mus musculus GN=Traf1 PE=1 SV=2
Length = 409
Score = 34.7 bits (78), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 180 WKVSNFSSLLDEFYESESFGCYK---WYANYSMDVKILLYPNGNGEAKGNCISLFLDVSQ 236
WK++N + E + + + A Y + + LY NG+G K +SLF+ + +
Sbjct: 264 WKITNVTKRCHESVCGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMR 323
Query: 237 SS----IP-PNTKLLTKYFLCVENQMNGKN------SEVEGEWLYTLTNRAIGGRQFMTL 285
+P P +T L N+ + + S + + TN A G F L
Sbjct: 324 GEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPL 383
Query: 286 AKLKDPTEGYLVDDSCIIKAEV 307
+KL+ P Y+ DD+ +K V
Sbjct: 384 SKLQSPKHAYVKDDTMFLKCIV 405
>sp|O09173|HGD_MOUSE Homogentisate 1,2-dioxygenase OS=Mus musculus GN=Hgd PE=1 SV=2
Length = 445
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 27/138 (19%)
Query: 79 LPTGWEVNAITISFYSI--KFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTF 136
+P W + Y++ KF+ + K S NV+ H + KY + F+ +
Sbjct: 229 IPVAWYEDRRVPGGYTVINKFQGKLFACKQDVSPFNVVAWHGNYTPYKYNLENFMVINAV 288
Query: 137 S----DP-----------LNGYLINDACVFGAEVFVVKNTFKGECLSMMHDPPTYYHTWK 181
+ DP G I D +F V TF+ P YYH
Sbjct: 289 AFDHADPSIFTVLTAKSLRPGVAIADFVIFPPRWGVADKTFR----------PPYYHRNC 338
Query: 182 VSNFSSLLDEFYESESFG 199
+S F L+ YE++ G
Sbjct: 339 MSEFMGLIKGHYEAKQGG 356
>sp|Q13077|TRAF1_HUMAN TNF receptor-associated factor 1 OS=Homo sapiens GN=TRAF1 PE=1 SV=1
Length = 416
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 14/140 (10%)
Query: 180 WKVSNFSSLLDEFYESESFGCYK---WYANYSMDVKILLYPNGNGEAKGNCISLFLDVSQ 236
WK++N + E + + + A Y + + LY NG+G K +SLF+ + +
Sbjct: 271 WKITNVTRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMR 330
Query: 237 SS----IP-PNTKLLTKYFLCVENQMNGKN------SEVEGEWLYTLTNRAIGGRQFMTL 285
+P P +T L N+ + + S + + TN A G F L
Sbjct: 331 GEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPL 390
Query: 286 AKLKDPTEGYLVDDSCIIKA 305
+KL+ P Y+ DD+ +K
Sbjct: 391 SKLQSPKHAYVKDDTMFLKC 410
>sp|A1L4W5|BPM6_ARATH BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis
thaliana GN=BPM6 PE=1 SV=1
Length = 415
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 19 YLFKIESFSLLSKASVEQLIL-DNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELA 74
+ F I+ +SL V + I DNF GGY+W + ++ G + + ++S+++ LA
Sbjct: 38 HQFVIQGYSLAKGIGVGKHIASDNFSVGGYQWTIFVYPDGKNPEDNSSYVSVFIVLA 94
>sp|Q1EBV6|BPM5_ARATH BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis
thaliana GN=BPM5 PE=1 SV=1
Length = 410
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 19 YLFKIESFSLLSKASVEQLIL-DNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETS 77
+ F I+ +SL + + I DNF GGY+W + + G + + ++S+++ LA
Sbjct: 31 HQFVIQGYSLAKGMGIGKHIASDNFSVGGYQWGIFFYPDGKNPEDNSSYVSVFIALAS-- 88
Query: 78 SLPTGWEVNAI 88
G EV A+
Sbjct: 89 ---EGTEVRAL 96
>sp|Q94420|MEL26_CAEEL Protein maternal effect lethal 26 OS=Caenorhabditis elegans
GN=mel-26 PE=1 SV=2
Length = 395
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 178 HTWKVSNFSSLLDEFYESESFGCYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD 233
HTW V NFS E+ E+ Y + + I +YP GNGE + + L L+
Sbjct: 44 HTWTVKNFSHCYQEYLEN---FVYLQRGDEQLTWSIKIYPKGNGENNKDFVFLCLN 96
>sp|O22286|BPM3_ARATH BTB/POZ and MATH domain-containing protein 3 OS=Arabidopsis
thaliana GN=BPM3 PE=1 SV=1
Length = 408
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 19 YLFKIESFSLLSKASVEQLIL-DNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETS 77
+ F I+ +SL S + I D F GGY W + + G + + +IS+++ LA S
Sbjct: 27 HQFTIQGYSLAKGMSPGKFIQSDIFSVGGYDWAIYFYPDGKNPEDQSSYISLFIALASDS 86
Query: 78 SLPTGWEVNA---ITISFYSIKFKTNILVSKVRNSTINVIVKHFHAMK---SKYGVAKFI 131
+ ++ A +T+ S K K KV + + + +K S +G +F
Sbjct: 87 N-----DIRALFELTLMDQSGKGK-----HKVHSHFDRALEGGPYTLKYKGSMWGYKRF- 135
Query: 132 DLKTFSDPLNGYLINDACVFGAEVFVVKNTFKGECLSMMHDPPTYYHTWKVSNFSSLLDE 191
K + + YL +D V V VV+ +G P Y +SN L +
Sbjct: 136 -FKRSALETSDYLKDDCLVINCTVGVVRARLEG--------PKQYGIVLPLSNMGQGLKD 186
Query: 192 FYESESFGC 200
+SE GC
Sbjct: 187 LLDSE-VGC 194
>sp|Q9NF14|BAT40_CAEEL BTB and MATH domain-containing protein 40 OS=Caenorhabditis elegans
GN=bath-40 PE=1 SV=1
Length = 402
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 163 KGECLSMMHDPPTYYHT--WKVSNFSSLLDEFYESESFGCYKWYANYSMDV--KILLYPN 218
K EC++ +P + T W V NF SLL + + D ++ LYP
Sbjct: 32 KNECMT---NPGSIVLTQRWTVCNFESLLKLSRPGSCLRSTVFKDDAVPDACWQLCLYPG 88
Query: 219 GNGEAKGNCISLFLDVSQSSIPPNTKLLTK-----YFL 251
G E N +SLFL +S +S P+ +++ K YFL
Sbjct: 89 GKREENANNVSLFLKMSATS--PSKEVVLKAEYRFYFL 124
>sp|Q6YCH2|TDPZ4_MOUSE TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4
PE=2 SV=2
Length = 370
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Query: 178 HTWKVSNFSSLLDEFYESESFGCYKWYANYSMDVKILLYPNGNGEAKGNCISLFLDVSQS 237
+ W +SNFS ++E E + + N M + +YP G E + +SL+L +
Sbjct: 22 YRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSC 81
Query: 238 SIPPNTKLLTKYFLCVENQMNGK-NSEVEGEWLYTLTNRAIGGRQFMTLAKLKDPTEGYL 296
+ K+ +C+ N K N+E + ++ G +F+T P +
Sbjct: 82 E---KGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLT 138
Query: 297 VDDSCIIKAEVTL 309
DD + +V++
Sbjct: 139 PDDKFTLLCKVSV 151
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 OS=Homo sapiens GN=TRAF2 PE=1 SV=2
Length = 501
Score = 31.6 bits (70), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 180 WKVSNFSSLLDEFYESESFGCYK---WYANYSMDVKILLYPNGNGEAKGNCISLFLDVSQ 236
WK+S+F+ E + + + Y + + +Y NG+G +G +SLF V +
Sbjct: 356 WKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMK 415
Query: 237 SSIPPNTKLL-----TKYFLCVENQMNGKN------SEVEGEWLYTLTNR---AIGGRQF 282
PN LL K L + +Q N ++ +V N A G F
Sbjct: 416 G---PNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLF 472
Query: 283 MTLAKLKDPTEGYLVDDSCIIKAEVTLHGL 312
++K+ + Y+ DD+ IKA V L GL
Sbjct: 473 CPVSKM-EAKNSYVRDDAIFIKAIVDLTGL 501
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,580,461
Number of Sequences: 539616
Number of extensions: 4601085
Number of successful extensions: 8873
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 8832
Number of HSP's gapped (non-prelim): 70
length of query: 317
length of database: 191,569,459
effective HSP length: 117
effective length of query: 200
effective length of database: 128,434,387
effective search space: 25686877400
effective search space used: 25686877400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)