Query 041904
Match_columns 317
No_of_seqs 259 out of 1893
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 20:34:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2foj_A Ubiquitin carboxyl-term 100.0 1.1E-29 3.7E-34 207.0 14.7 141 11-163 13-153 (155)
2 3ivv_A Speckle-type POZ protei 100.0 6E-30 2E-34 206.2 12.0 139 10-160 4-145 (145)
3 2foj_A Ubiquitin carboxyl-term 100.0 5.9E-29 2E-33 202.7 13.6 134 173-315 16-153 (155)
4 4gjh_A TNF receptor-associated 99.9 9.5E-29 3.2E-33 205.8 5.8 148 9-159 16-174 (178)
5 1lb6_A TNF receptor-associated 99.9 2.2E-27 7.6E-32 194.3 10.0 143 14-160 2-158 (160)
6 4ghu_A TNF receptor-associated 99.9 4.6E-28 1.6E-32 204.4 4.6 144 13-160 36-189 (198)
7 3ivv_A Speckle-type POZ protei 99.9 6.8E-27 2.3E-31 188.3 11.1 130 171-312 6-145 (145)
8 1d00_A Tumor necrosis factor r 99.9 3.9E-27 1.3E-31 194.4 6.7 141 13-158 15-166 (168)
9 1ca9_A TRAF2, protein (TNF rec 99.9 7.8E-27 2.7E-31 196.6 8.3 140 14-158 40-190 (192)
10 2gkw_A TNF receptor-associated 99.9 6.5E-27 2.2E-31 196.9 6.9 141 14-159 37-188 (192)
11 1flk_A TNF receptor associated 99.9 5.6E-26 1.9E-30 196.1 5.7 141 14-159 73-224 (228)
12 4gjh_A TNF receptor-associated 99.9 6.6E-26 2.3E-30 188.6 5.3 133 172-312 20-175 (178)
13 3hqi_A Speckle-type POZ protei 99.9 8.4E-25 2.9E-29 198.0 11.5 137 13-161 3-142 (312)
14 2f1z_A Ubiquitin carboxyl-term 99.9 2.5E-24 8.5E-29 207.9 10.7 141 10-162 24-164 (522)
15 1d00_A Tumor necrosis factor r 99.9 9.5E-25 3.2E-29 180.1 6.1 130 173-311 16-167 (168)
16 1ca9_A TRAF2, protein (TNF rec 99.9 1.3E-24 4.3E-29 183.1 5.9 130 173-311 40-191 (192)
17 1lb6_A TNF receptor-associated 99.9 7.2E-24 2.5E-28 173.4 9.2 129 174-312 3-158 (160)
18 4ghu_A TNF receptor-associated 99.9 1.9E-24 6.5E-29 182.2 4.9 132 172-313 36-190 (198)
19 2gkw_A TNF receptor-associated 99.9 2.8E-24 9.7E-29 180.7 4.7 129 174-312 38-189 (192)
20 3hqi_A Speckle-type POZ protei 99.9 1.8E-22 6.2E-27 182.6 12.6 126 175-312 6-141 (312)
21 1flk_A TNF receptor associated 99.9 2.6E-23 9E-28 179.3 5.8 131 173-313 73-226 (228)
22 2f1z_A Ubiquitin carboxyl-term 99.9 2.3E-22 7.7E-27 194.2 11.1 134 173-315 28-165 (522)
23 4gwm_A Meprin A subunit beta; 99.5 7.7E-15 2.6E-19 141.2 9.2 147 10-164 399-572 (592)
24 4gwm_A Meprin A subunit beta; 99.2 3.8E-11 1.3E-15 115.6 10.0 125 171-310 401-566 (592)
25 3v0r_A Major allergen ALT A 1; 27.6 12 0.0004 28.1 -0.2 30 14-44 9-38 (133)
No 1
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=1.1e-29 Score=207.00 Aligned_cols=141 Identities=18% Similarity=0.242 Sum_probs=116.3
Q ss_pred ccccCCcEEEEEEcCcccccccccceEEcccEEeCCeEEEEEEEecCCCCCCCCCcEEEEEEeccCCCCCCCCEEEEEEE
Q 041904 11 GRNAAPSHYLFKIESFSLLSKASVEQLILDNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVNAITI 90 (317)
Q Consensus 11 ~~~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~~gG~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~~~~w~v~~~f~ 90 (317)
..-.+.++|+|+|+|||.++ +.++||+|.+||++|+|.+||+|+..++..+||||||+|... ..+.+|++.|+|+
T Consensus 13 ~~~~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~-~~~~~w~v~a~~~ 87 (155)
T 2foj_A 13 TSWRSEATFQFTVERFSRLS----ESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAE-SDSTSWSCHAQAV 87 (155)
T ss_dssp CTTCSEEEEEEEESSGGGCC----SCEECCCEEETTEEEEEEEEEEC------CBEEEEEEEESTT-CCCSSCEEEEEEE
T ss_pred CCcCCCcEEEEEECChhhcC----CceEcCCEEECCccEEEEEEECCCCCCCCCCEEEEEEEeCCC-CCCCCCEEEEEEE
Confidence 44467799999999999994 589999999999999999999997531246899999999654 3466799999999
Q ss_pred EEEEecCCCcEEEEEeeecccceeeeecccccccccccceeecccccCCCCceEeCCEEEEEEEEEEEeecCc
Q 041904 91 SFYSIKFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVKNTFK 163 (317)
Q Consensus 91 ~~l~n~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~~~~~ 163 (317)
|.|+||+++.....+. ..+.|.....+|||++||++++|++++++||+||+|+|+|+|+|.+++|.
T Consensus 88 l~l~~~~~~~~~~~~~-------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 88 LKIINYRDDEKSFSRR-------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp EEECCSSCGGGCEEEE-------EEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEEEcCCCCcceEEec-------cEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 9999998875333323 56788866788999999999999888899999999999999999877664
No 2
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.96 E-value=6e-30 Score=206.23 Aligned_cols=139 Identities=24% Similarity=0.285 Sum_probs=117.5
Q ss_pred eccccCCcEEEEEEcCcccccccccceEEcccEEeCCe---EEEEEEEecCCCCCCCCCcEEEEEEeccCCCCCCCCEEE
Q 041904 10 AGRNAAPSHYLFKIESFSLLSKASVEQLILDNFEAGGY---KWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVN 86 (317)
Q Consensus 10 ~~~~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~~gG~---~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~~~~w~v~ 86 (317)
.+.+...++|+|+|+|||.++++.++.++||+|.+||| +|+|.+||+|+..+ +.+|||+||+|.+. ..|++.
T Consensus 4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~----~~w~v~ 78 (145)
T 3ivv_A 4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSC----PKSEVR 78 (145)
T ss_dssp -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEEEEEEETTCSSGG-GTTEEEEEEEEEEC----SSSEEE
T ss_pred CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceEEEEEEcCCCCCC-CCCeEEEEEEEcCC----CCCcEE
Confidence 46678899999999999998754578999999999985 99999999998753 56899999999875 369999
Q ss_pred EEEEEEEEecCCCcEEEEEeeecccceeeeecccccccccccceeecccccCCCCceEeCCEEEEEEEEEEEee
Q 041904 87 AITISFYSIKFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVKN 160 (317)
Q Consensus 87 ~~f~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~~ 160 (317)
|+|+|.|+||.++........ ..+.|+ ...+|||++||++++|.+++++||+||+|+|+|+|+|+++
T Consensus 79 a~f~l~llnq~~~~~~~~~~~------~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 79 AKFKFSILNAKGEETKAMESQ------RAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp EEEEEEEECTTSCEEEEEECS------SCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred EEEEEEEEecCCCceeeeccc------ceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999999988765543222 457786 4578999999999999877899999999999999999853
No 3
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=99.96 E-value=5.9e-29 Score=202.67 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=115.1
Q ss_pred CCCceEEEEEecccccccceeecccc--cceEeeeccCCceEEEEecCCCCC-CCCCeEEEEEEccCCCCCCCCeEEEEE
Q 041904 173 PPTYYHTWKVSNFSSLLDEFYESESF--GCYKWYANYSMDVKILLYPNGNGE-AKGNCISLFLDVSQSSIPPNTKLLTKY 249 (317)
Q Consensus 173 ~~~~~~~~~i~nfs~~~~~~~~S~~f--~g~~W~~~~~~~~~i~~yp~g~~~-~~~~~lS~yL~~~~~~~~~~~~~~~~~ 249 (317)
.+.++|+|+|+|||.++ +.++|+.| ||++| +|++||+|+.. ++++||||||+|+....+..|++.|+|
T Consensus 16 ~~~~~~~w~I~nfS~~~-~~~~S~~f~~gg~~W--------~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~~ 86 (155)
T 2foj_A 16 RSEATFQFTVERFSRLS-ESVLSPPCFVRNLPW--------KIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQA 86 (155)
T ss_dssp CSEEEEEEEESSGGGCC-SCEECCCEEETTEEE--------EEEEEEEC------CBEEEEEEEESTTCCCSSCEEEEEE
T ss_pred CCCcEEEEEECChhhcC-CceEcCCEEECCccE--------EEEEEECCCCCCCCCCEEEEEEEeCCCCCCCCCEEEEEE
Confidence 45689999999999995 78899999 99999 99999999765 357899999997555556789999999
Q ss_pred EEEEEECCCCC-ceeeeeeEEeeCCCCCccccccccccccCCCCCCceeCCEEEEEEEEEEEeeecc
Q 041904 250 FLCVENQMNGK-NSEVEGEWLYTLTNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLHGLVLA 315 (317)
Q Consensus 250 ~l~l~n~~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~~~~~~ 315 (317)
+|.|+||.++. +......+.|.....+|||++||++++|+++++|||+||+|+|+|+|+|.+++|+
T Consensus 87 ~l~l~~~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~ 153 (155)
T 2foj_A 87 VLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 153 (155)
T ss_dssp EEEECCSSCGGGCEEEEEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEEEEcCCCCcceEEeccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence 99999998865 4456678899876789999999999999987799999999999999999999987
No 4
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.95 E-value=9.5e-29 Score=205.78 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=116.7
Q ss_pred eeccccCCcEEEEEEcCcccccc--cc--cceEEcccEEeC--CeEEEEEEEecCCCCCCCCCcEEEEEEeccCCC-CCC
Q 041904 9 LAGRNAAPSHYLFKIESFSLLSK--AS--VEQLILDNFEAG--GYKWKLSIHLTGSKSVNVTDHISIYLELAETSS-LPT 81 (317)
Q Consensus 9 ~~~~~~~~~~~~w~I~~fs~~~~--~~--~~~~~S~~F~~g--G~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~-~~~ 81 (317)
+....+..|+|+|+|+|||.+++ +. +..++||+|++| ||+|+|.+||+|+..+ .++|||+||+|.++.. ..+
T Consensus 16 ~~~~~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~d~~l 94 (178)
T 4gjh_A 16 QLEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSG-KGTHLSLYFVVMRGEFDSLL 94 (178)
T ss_dssp HHHHCCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEBCCTTGGGS
T ss_pred HhcCcccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEEEEEEEECCCCCC-CCCEEEEEEEEecCCCCccc
Confidence 33446788999999999999875 12 348999999999 9999999999998753 5689999999987653 346
Q ss_pred CCEEEEEEEEEEEecCCCcEEEEEeeecccceeeeecc----cccccccccceeecccccCCCCceEeCCEEEEEEEEEE
Q 041904 82 GWEVNAITISFYSIKFKTNILVSKVRNSTINVIVKHFH----AMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFV 157 (317)
Q Consensus 82 ~w~v~~~f~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v 157 (317)
+|++.++|+|.|+||.++..+..+.. +.+...+.|+ ....+|||.+||++++|+++.++||+||+|+|+|+|.|
T Consensus 95 ~W~v~a~~~l~Lldq~~~~~~~~~~~--~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i 172 (178)
T 4gjh_A 95 QWPFRQRVTLMLLDQSGKKNHIVETF--KADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDL 172 (178)
T ss_dssp CSSCCCEEEEEECCTTSSCCCEEEEE--ECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECC
T ss_pred CCceEEEEEEEEEcCCCCcceeEEee--ccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEe
Confidence 89999999999999987654332110 0001235676 23568999999999999977799999999999999976
Q ss_pred Ee
Q 041904 158 VK 159 (317)
Q Consensus 158 ~~ 159 (317)
.+
T Consensus 173 ~~ 174 (178)
T 4gjh_A 173 TD 174 (178)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 5
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.94 E-value=2.2e-27 Score=194.30 Aligned_cols=143 Identities=15% Similarity=0.260 Sum_probs=108.3
Q ss_pred cCCcEEEEEEcCcccccc--cccc--eEEcccEEeC--CeEEEEEEEecCCCCCCCCCcEEEEEEeccCCC-CCCCCEEE
Q 041904 14 AAPSHYLFKIESFSLLSK--ASVE--QLILDNFEAG--GYKWKLSIHLTGSKSVNVTDHISIYLELAETSS-LPTGWEVN 86 (317)
Q Consensus 14 ~~~~~~~w~I~~fs~~~~--~~~~--~~~S~~F~~g--G~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~v~ 86 (317)
...|+|+|+|+|||.+++ +.++ .++||+|++| ||+|+|.+||+|+..+.+++|||+||+++++.. ..++|++.
T Consensus 2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~wp~~ 81 (160)
T 1lb6_A 2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQ 81 (160)
T ss_dssp CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEEEEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeEEEEEEecCCCCCCCCCEEEEEEEEeecCCCccCCCcee
Confidence 467999999999999875 2455 8999999999 999999999999764323689999999987654 35679999
Q ss_pred EEEEEEEEecCCCcE--EEEEeeecccceeeeeccc-----ccccccccceeecccccCCCCceEeCCEEEEEEEEEEEe
Q 041904 87 AITISFYSIKFKTNI--LVSKVRNSTINVIVKHFHA-----MKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVK 159 (317)
Q Consensus 87 ~~f~~~l~n~~~~~~--~~~~~~~~~~~~~~~~F~~-----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~ 159 (317)
++|+|.|+||.+... ...+.. .+ ......|.. ...+|||.+||++++|+ +++||+||+|+|+|+|.|+.
T Consensus 82 a~~~l~lldq~~~~~~~~~~~~~-~~-~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~v~~ 157 (160)
T 1lb6_A 82 GTIRLTILDQSEAPVRQNHEEIM-DA-KPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVSTRF 157 (160)
T ss_dssp SEEEEEECCCSCTTSCCCEEEEE-EC-CTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEEC--
T ss_pred eeEEEEEEcCCCccccccceEEe-ec-CCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEEEee
Confidence 999999999986521 111010 00 001234542 12479999999999998 68999999999999999875
Q ss_pred e
Q 041904 160 N 160 (317)
Q Consensus 160 ~ 160 (317)
+
T Consensus 158 ~ 158 (160)
T 1lb6_A 158 D 158 (160)
T ss_dssp -
T ss_pred c
Confidence 4
No 6
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.94 E-value=4.6e-28 Score=204.39 Aligned_cols=144 Identities=14% Similarity=0.152 Sum_probs=113.8
Q ss_pred ccCCcEEEEEEcCcccccc----cccceEEcccEEeC--CeEEEEEEEecCCCCCCCCCcEEEEEEeccCCC-CCCCCEE
Q 041904 13 NAAPSHYLFKIESFSLLSK----ASVEQLILDNFEAG--GYKWKLSIHLTGSKSVNVTDHISIYLELAETSS-LPTGWEV 85 (317)
Q Consensus 13 ~~~~~~~~w~I~~fs~~~~----~~~~~~~S~~F~~g--G~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~v 85 (317)
....|+|.|+|+|||.+++ +.++.++||+|++| ||+|+|.+||+|+..+ .++|||+||++.++.. ..++|++
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W~i~~yPnG~~~~-~~~~lSlyL~l~~g~~D~~l~wp~ 114 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPF 114 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEEEEEEEeCCCCCC-CCCeEEEEEEecCCccCCCCCceE
Confidence 4678999999999999875 23579999999999 9999999999998753 5789999999987654 2468999
Q ss_pred EEEEEEEEEecCCCcEEEEEeeecccc---eeeeecccccccccccceeecccccCCCCceEeCCEEEEEEEEEEEee
Q 041904 86 NAITISFYSIKFKTNILVSKVRNSTIN---VIVKHFHAMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVKN 160 (317)
Q Consensus 86 ~~~f~~~l~n~~~~~~~~~~~~~~~~~---~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~~ 160 (317)
.++|+|.|+||.+...+..+.. .+.. ...+.|...+.+|||.+||++++|+ ++|||+||+|+|+|+|.|+..
T Consensus 115 ~a~~~l~Lldq~~~~~~~~~~~-~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~ 189 (198)
T 4ghu_A 115 KQKVTLMLMDQGSSRRHLGDAF-KPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL 189 (198)
T ss_dssp CCCEEEEECCCSTTCCCEEEEE-CCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTC
T ss_pred EEEEEEEEEcCCCCccceEEEe-ecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccC
Confidence 9999999999987654432210 0000 0112244456789999999999998 589999999999999987654
No 7
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=99.94 E-value=6.8e-27 Score=188.27 Aligned_cols=130 Identities=22% Similarity=0.402 Sum_probs=109.7
Q ss_pred cCCCCceEEEEEecccccc---cceeecccc--cc---eEeeeccCCceEEEEecCCCCCCCCCeEEEEEEccCCCCCCC
Q 041904 171 HDPPTYYHTWKVSNFSSLL---DEFYESESF--GC---YKWYANYSMDVKILLYPNGNGEAKGNCISLFLDVSQSSIPPN 242 (317)
Q Consensus 171 ~~~~~~~~~~~i~nfs~~~---~~~~~S~~f--~g---~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~~~~~~~~~~ 242 (317)
.+...++|+|+|+|||.++ ++.+.|+.| || ++| +|++||+|+..++++|||+||++... ..
T Consensus 6 ~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W--------~i~~yP~G~~~~~~~~lSlyL~l~~~---~~ 74 (145)
T 3ivv_A 6 GKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW--------CLRVNPKGLDEESKDYLSLYLLLVSC---PK 74 (145)
T ss_dssp CCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEE--------EEEEETTCSSGGGTTEEEEEEEEEEC---SS
T ss_pred CcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceE--------EEEEEcCCCCCCCCCeEEEEEEEcCC---CC
Confidence 4456789999999999987 478999999 77 599 99999999877667899999995322 47
Q ss_pred CeEEEEEEEEEEECCCCCcee--eeeeEEeeCCCCCccccccccccccCCCCCCceeCCEEEEEEEEEEEee
Q 041904 243 TKLLTKYFLCVENQMNGKNSE--VEGEWLYTLTNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLHGL 312 (317)
Q Consensus 243 ~~~~~~~~l~l~n~~~~~~~~--~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~~~ 312 (317)
|++.|+|+|.|+||.++.... ....+.|. ...+|||++||++++|+++++|||+||+|+|+|+|+|++.
T Consensus 75 w~v~a~f~l~llnq~~~~~~~~~~~~~~~F~-~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d 145 (145)
T 3ivv_A 75 SEVRAKFKFSILNAKGEETKAMESQRAYRFV-QGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD 145 (145)
T ss_dssp SEEEEEEEEEEECTTSCEEEEEECSSCEEEE-TTCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred CcEEEEEEEEEEecCCCceeeecccceEEec-CCCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence 999999999999999876442 23467887 4689999999999999766689999999999999999863
No 8
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.93 E-value=3.9e-27 Score=194.41 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=109.9
Q ss_pred ccCCcEEEEEEcCcccccc--cccc--eEEcccEE--eCCeEEEEEEEecCCCCCCCCCcEEEEEEeccCCCCC-CCCEE
Q 041904 13 NAAPSHYLFKIESFSLLSK--ASVE--QLILDNFE--AGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLP-TGWEV 85 (317)
Q Consensus 13 ~~~~~~~~w~I~~fs~~~~--~~~~--~~~S~~F~--~gG~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~v 85 (317)
....|+|+|+|+|||.+++ ..++ .++||+|+ +|||+|+|.+||+|+..+ .++|||+||++.++...+ ++|++
T Consensus 15 ~~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~~~~~~w~~ 93 (168)
T 1d00_A 15 STYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPF 93 (168)
T ss_dssp CCSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSC
T ss_pred cccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEEEEEEEeCCCCCC-CCcEEEEEEEEecCCCCccCCCce
Confidence 3578999999999999976 2344 49999997 789999999999998653 568999999998865543 68999
Q ss_pred EEEEEEEEEecCCCcEEEEEeeecccceeeeeccc----ccccccccceeecccccCCCCceEeCCEEEEEEEEEEE
Q 041904 86 NAITISFYSIKFKTNILVSKVRNSTINVIVKHFHA----MKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVV 158 (317)
Q Consensus 86 ~~~f~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~ 158 (317)
.++|+|.|+||++.+.... .. .+ +...+.|.. .+.+|||.+||++++|+++ +|||+||+|+|+|+|.|.
T Consensus 94 ~~~~~l~ll~q~~~~~~~~-~~-~~-~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 94 NQKVTLMLLDQNNREHVID-AF-RP-DVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp CCCEEEEECCTTSSCCEEE-EE-CC-CTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred EEEEEEEEECCCCCcccee-cc-cc-CcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 9999999999988653321 10 00 001235652 3578999999999999843 499999999999999864
No 9
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.93 E-value=7.8e-27 Score=196.64 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=111.0
Q ss_pred cCCcEEEEEEcCcccccc--cccc--eEEcccEEe--CCeEEEEEEEecCCCCCCCCCcEEEEEEeccCCCCC-CCCEEE
Q 041904 14 AAPSHYLFKIESFSLLSK--ASVE--QLILDNFEA--GGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLP-TGWEVN 86 (317)
Q Consensus 14 ~~~~~~~w~I~~fs~~~~--~~~~--~~~S~~F~~--gG~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~~-~~w~v~ 86 (317)
...|+|+|+|+|||.+++ +.|+ .++||+|++ |||+|+|.+||+|+..+ .++|||+||++.++...+ ++|++.
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W~i~~yP~G~~~~-~~~~lSlyL~l~~~~~~~~~~W~~~ 118 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTG-RGTHLSLFFVVMKGPNDALLRWPFN 118 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEEEEEEEeCCCCCC-CCCEEEEEEEEccCCCCCcCCCceE
Confidence 578999999999999875 2344 699999999 99999999999998653 568999999998875443 789999
Q ss_pred EEEEEEEEecCCCcEEEEEeeecccceeeeecc----cccccccccceeecccccCCCCceEeCCEEEEEEEEEEE
Q 041904 87 AITISFYSIKFKTNILVSKVRNSTINVIVKHFH----AMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVV 158 (317)
Q Consensus 87 ~~f~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~ 158 (317)
++|+|.|+||++++.... .. .-+.....|. ....+|||.+||++++|.+ ++|||+||+|+|+|+|.|.
T Consensus 119 a~~~l~lldq~~~~~~~~-~~--~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 119 QKVTLMLLDQNNREHVID-AF--RPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp CCEEEEECCTTSSCCEEE-EE--CCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCT
T ss_pred EEEEEEEECCCCCceeeE-ee--ccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEec
Confidence 999999999988743221 10 0000122464 2356899999999999986 5799999999999999875
No 10
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.93 E-value=6.5e-27 Score=196.87 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=111.4
Q ss_pred cCCcEEEEEEcCcccccc--cccc--eEEcccEEeC--CeEEEEEEEecCCCCCCCCCcEEEEEEeccCCCC-CCCCEEE
Q 041904 14 AAPSHYLFKIESFSLLSK--ASVE--QLILDNFEAG--GYKWKLSIHLTGSKSVNVTDHISIYLELAETSSL-PTGWEVN 86 (317)
Q Consensus 14 ~~~~~~~w~I~~fs~~~~--~~~~--~~~S~~F~~g--G~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~v~ 86 (317)
...|+|.|+|+|||.+++ +.++ .++||+|++| ||+|+|.+||+|++.+ .++|||+||+++++..+ .++|++.
T Consensus 37 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw~i~~yPnG~~~~-~~~~lSlyL~l~~~~~d~~l~wp~~ 115 (192)
T 2gkw_A 37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMG-KGTHLSLFFVIMRGEYDALLPWPFK 115 (192)
T ss_dssp CCSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEEEEEEETTCCGGG-TTTEEEEEEEEECCTTGGGSCSSCC
T ss_pred ccCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEEEEEEEeCCCCCC-CCCEEEEEEEEecCCCCccCCCcEE
Confidence 378999999999999974 3355 5999999999 9999999999998653 57899999999876543 4689999
Q ss_pred EEEEEEEEecCCCcEEEEEeeecccceeeeeccc----ccccccccceeecccccCCCCceEeCCEEEEEEEEEEEe
Q 041904 87 AITISFYSIKFKTNILVSKVRNSTINVIVKHFHA----MKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVK 159 (317)
Q Consensus 87 ~~f~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~~----~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~ 159 (317)
++|+|.|+||.+.+.+..+.. ..+...+.|.. .+.+|||++||++++|+ ++|||+||+|+|+|+|.|..
T Consensus 116 a~~~l~lldq~~~~~~~~~~~--~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~ 188 (192)
T 2gkw_A 116 QKVTLMLMDQGSSRRHLGDAF--KPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 188 (192)
T ss_dssp CCEEEEECCCSTTCCCEEEEE--CCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred EEEEEEEECCCCCccceEEEE--ecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence 999999999988754432110 00002245753 24689999999999998 46999999999999997643
No 11
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.92 E-value=5.6e-26 Score=196.10 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=111.7
Q ss_pred cCCcEEEEEEcCcccccc--ccc--ceEEcccEEeC--CeEEEEEEEecCCCCCCCCCcEEEEEEeccCCCC-CCCCEEE
Q 041904 14 AAPSHYLFKIESFSLLSK--ASV--EQLILDNFEAG--GYKWKLSIHLTGSKSVNVTDHISIYLELAETSSL-PTGWEVN 86 (317)
Q Consensus 14 ~~~~~~~w~I~~fs~~~~--~~~--~~~~S~~F~~g--G~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~-~~~w~v~ 86 (317)
...|+|.|+|+|||.++. +.| ..++||+|++| ||+|+|.+||+|++. +.++|||+||+++++... .++|++.
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~-~~~~~lSlyL~l~~~~~d~~l~Wp~~ 151 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM-GKGTHLSLFFVIMRGEYDALLPWPFK 151 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGG-GTTTEEEEEECCBCCTTTTSSCSSCC
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCC-CCCCEEEEEEEEecCCccccCCCcEE
Confidence 478999999999999875 223 38999999999 999999999999865 367899999999876543 5689999
Q ss_pred EEEEEEEEecCCCcEEEEEeeecccceeeeecc----cccccccccceeecccccCCCCceEeCCEEEEEEEEEEEe
Q 041904 87 AITISFYSIKFKTNILVSKVRNSTINVIVKHFH----AMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVK 159 (317)
Q Consensus 87 ~~f~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~----~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~ 159 (317)
++|+|.|+||.+.+.+..+.. +-+...+.|. ..+.+|||++||++++|+ ++|||+||+|+|+|+|.|.+
T Consensus 152 a~~~l~lldq~~~~~~~~~~~--~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~ 224 (228)
T 1flk_A 152 QKVTLMLMDQGSSRRHLGDAF--KPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD 224 (228)
T ss_dssp CCEEEEECCCSSSCCCEEEEE--CCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTT
T ss_pred EEEEEEEEcCCCCccceeeee--cCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccc
Confidence 999999999987754332110 0001223464 235689999999999998 48999999999999998754
No 12
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=99.92 E-value=6.6e-26 Score=188.56 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=108.8
Q ss_pred CCCCceEEEEEecccccccc-------eeecccc--c--ceEeeeccCCceEEEEecCCCCCCCCCeEEEEEEc-cCC-C
Q 041904 172 DPPTYYHTWKVSNFSSLLDE-------FYESESF--G--CYKWYANYSMDVKILLYPNGNGEAKGNCISLFLDV-SQS-S 238 (317)
Q Consensus 172 ~~~~~~~~~~i~nfs~~~~~-------~~~S~~f--~--g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~~-~~~-~ 238 (317)
....++|+|+|+|||.++++ .+.|+.| | ||+| +|.+||+|+..++++|||+||++ +.. +
T Consensus 20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W--------~i~~yP~G~~~~~~~~lSlyL~l~~~~~d 91 (178)
T 4gjh_A 20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRL--------CARAYLNGDGSGKGTHLSLYFVVMRGEFD 91 (178)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEE--------EEEEETTCCGGGTTTEEEEEEEEBCCTTG
T ss_pred cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEE--------EEEEEECCCCCCCCCEEEEEEEEecCCCC
Confidence 45679999999999998742 7999999 8 9999 99999999887777999999994 432 2
Q ss_pred CCCCCeEEEEEEEEEEECCCCC-ceeee-----eeEEeeC----CCCCccccccccccccCCCCCCceeCCEEEEEEEEE
Q 041904 239 IPPNTKLLTKYFLCVENQMNGK-NSEVE-----GEWLYTL----TNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVT 308 (317)
Q Consensus 239 ~~~~~~~~~~~~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~ 308 (317)
....|++.++|+|.|+||.++. +.... ..+.|.. .+.+|||++||++++|+++.+|||+||+|+|+|+|+
T Consensus 92 ~~l~W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~ 171 (178)
T 4gjh_A 92 SLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVD 171 (178)
T ss_dssp GGSCSSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEEC
T ss_pred cccCCceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEE
Confidence 2357999999999999998754 32221 2356763 246899999999999998778999999999999998
Q ss_pred EEee
Q 041904 309 LHGL 312 (317)
Q Consensus 309 v~~~ 312 (317)
|.++
T Consensus 172 i~~~ 175 (178)
T 4gjh_A 172 LTDL 175 (178)
T ss_dssp CTTC
T ss_pred ecCC
Confidence 7654
No 13
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.91 E-value=8.4e-25 Score=197.98 Aligned_cols=137 Identities=24% Similarity=0.292 Sum_probs=112.4
Q ss_pred ccCCcEEEEEEcCcccccccccceEEcccEEeCCe---EEEEEEEecCCCCCCCCCcEEEEEEeccCCCCCCCCEEEEEE
Q 041904 13 NAAPSHYLFKIESFSLLSKASVEQLILDNFEAGGY---KWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVNAIT 89 (317)
Q Consensus 13 ~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~~gG~---~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~~~~w~v~~~f 89 (317)
+...++|+|+|.|||.++.+.++.++||+|.+||+ +|+|.+||+|.... +++|||+||+|.+.. .|++.|+|
T Consensus 3 ~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~-~~~~lslyL~~~~~~----~~~v~a~~ 77 (312)
T 3hqi_A 3 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEE-SKDYLSLYLLLVSCP----KSEVRAKF 77 (312)
T ss_dssp EEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC---CTTEEEEEEEEEECC----C-CEEEEE
T ss_pred ceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCcc-CCCcEEEEEEEcCCC----CCcEEEEE
Confidence 34568999999999999754578999999999985 99999999998653 578999999998653 58999999
Q ss_pred EEEEEecCCCcEEEEEeeecccceeeeecccccccccccceeecccccCCCCceEeCCEEEEEEEEEEEeec
Q 041904 90 ISFYSIKFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVKNT 161 (317)
Q Consensus 90 ~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~~~ 161 (317)
+|.|+||+++........ ..+.|.. ..+|||++||++++|+++.+|||+||+|+|+|+|.|+...
T Consensus 78 ~~~l~~~~~~~~~~~~~~------~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~ 142 (312)
T 3hqi_A 78 KFSILNAKGEETKAMESQ------RAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDS 142 (312)
T ss_dssp EEEEECTTSCEEEEEECS------SCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEEC
T ss_pred EEEEEeCCCCcccccccC------CceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEecc
Confidence 999999998765554322 5567874 4589999999999998777899999999999999999764
No 14
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.90 E-value=2.5e-24 Score=207.94 Aligned_cols=141 Identities=17% Similarity=0.239 Sum_probs=113.7
Q ss_pred eccccCCcEEEEEEcCcccccccccceEEcccEEeCCeEEEEEEEecCCCCCCCCCcEEEEEEeccCCCCCCCCEEEEEE
Q 041904 10 AGRNAAPSHYLFKIESFSLLSKASVEQLILDNFEAGGYKWKLSIHLTGSKSVNVTDHISIYLELAETSSLPTGWEVNAIT 89 (317)
Q Consensus 10 ~~~~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~~gG~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~~~~~w~v~~~f 89 (317)
+....+.++|+|+|+|||.+++ .++|++|.+||++|+|.+||+|+..+++.+|||+||.|.+.. .+..|.+.|+|
T Consensus 24 ~~~~~~~~~~~w~I~nfS~~~~----~~~S~~F~vgg~~W~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~w~v~a~f 98 (522)
T 2f1z_A 24 DTSWRSEATFQFTVERFSRLSE----SVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTSWSCHAQA 98 (522)
T ss_dssp --CCCSEEEEEEEESSCTTCCS----CEECCCEEETTEEEEEEECBC--------CBBCEEEEESTTC-CCSSCBEEEEE
T ss_pred cccccCCcEEEEEECChhhcCC----ceeCCCEEECCEeeEEEEEeCCCCCCCCCCeEEEEEEecCCC-CCCCceEEEEE
Confidence 3334678999999999999963 899999999999999999999975422568999999998763 56789999999
Q ss_pred EEEEEecCCCcEEEEEeeecccceeeeecccccccccccceeecccccCCCCceEeCCEEEEEEEEEEEeecC
Q 041904 90 ISFYSIKFKTNILVSKVRNSTINVIVKHFHAMKSKYGVAKFIDLKTFSDPLNGYLINDACVFGAEVFVVKNTF 162 (317)
Q Consensus 90 ~~~l~n~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~l~~~~~~yl~~d~l~i~~~v~v~~~~~ 162 (317)
+|.|+|+.++.....+. ..+.|.....+|||.+||++++|.++++|||.||+++|+|.|+|..+++
T Consensus 99 ~l~l~n~~~~~~~~~~~-------~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g 164 (522)
T 2f1z_A 99 VLKIINYRDDEKSFSRR-------ISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG 164 (522)
T ss_dssp EEEECCTTCGGGCEEEE-------CCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred EEEEEcCCCCccceecc-------ceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence 99999998765544333 6678887778899999999999987789999999999999999975543
No 15
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A
Probab=99.90 E-value=9.5e-25 Score=180.08 Aligned_cols=130 Identities=26% Similarity=0.317 Sum_probs=105.0
Q ss_pred CCCceEEEEEeccccccc-----c--eeecccc----cceEeeeccCCceEEEEecCCCCCCCCCeEEEEEE-ccCCCCC
Q 041904 173 PPTYYHTWKVSNFSSLLD-----E--FYESESF----GCYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD-VSQSSIP 240 (317)
Q Consensus 173 ~~~~~~~~~i~nfs~~~~-----~--~~~S~~f----~g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~-~~~~~~~ 240 (317)
...++|+|+|+|||.+++ + .+.|+.| |||+| +|++||+|+..++++|||+||+ ++....+
T Consensus 16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W--------~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~ 87 (168)
T 1d00_A 16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM--------CLRIYLNGDGTGRGTHLSLFFVVMKGPNDA 87 (168)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE--------EEEEETTCCGGGTTTEEEEEEEEECCTTGG
T ss_pred ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEE--------EEEEEeCCCCCCCCcEEEEEEEEecCCCCc
Confidence 467899999999999873 2 3889998 79999 9999999987766799999999 4533332
Q ss_pred -CCCeEEEEEEEEEEECCCCCceeeee-----eEEeeC----CCCCccccccccccccCCCCCCceeCCEEEEEEEEEEE
Q 041904 241 -PNTKLLTKYFLCVENQMNGKNSEVEG-----EWLYTL----TNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLH 310 (317)
Q Consensus 241 -~~~~~~~~~~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~ 310 (317)
..|++.++|+|.|+||.++++..... .+.|.. .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.
T Consensus 88 ~~~w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~ 166 (168)
T 1d00_A 88 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLT 166 (168)
T ss_dssp GSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCT
T ss_pred cCCCceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEec
Confidence 68999999999999999866443321 124642 3578999999999999973 499999999999999875
Q ss_pred e
Q 041904 311 G 311 (317)
Q Consensus 311 ~ 311 (317)
+
T Consensus 167 ~ 167 (168)
T 1d00_A 167 G 167 (168)
T ss_dssp T
T ss_pred C
Confidence 3
No 16
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=99.90 E-value=1.3e-24 Score=183.12 Aligned_cols=130 Identities=27% Similarity=0.327 Sum_probs=105.5
Q ss_pred CCCceEEEEEecccccccc-------eeecccc----cceEeeeccCCceEEEEecCCCCCCCCCeEEEEEE-ccCCCCC
Q 041904 173 PPTYYHTWKVSNFSSLLDE-------FYESESF----GCYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD-VSQSSIP 240 (317)
Q Consensus 173 ~~~~~~~~~i~nfs~~~~~-------~~~S~~f----~g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~-~~~~~~~ 240 (317)
...++|+|+|+|||.+++. .++|+.| |||+| +|.+||+|+..++++|||+||+ ++....+
T Consensus 40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W--------~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~ 111 (192)
T 1ca9_A 40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM--------CLRIYLNGDGTGRGTHLSLFFVVMKGPNDA 111 (192)
T ss_dssp CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE--------EEEEETTCCGGGTTTEEEEEEEEECCTTGG
T ss_pred ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEE--------EEEEEeCCCCCCCCCEEEEEEEEccCCCCC
Confidence 4678999999999998732 5899999 79999 9999999987766789999999 5543333
Q ss_pred -CCCeEEEEEEEEEEECCCCCceeeee-----eEEeeC----CCCCccccccccccccCCCCCCceeCCEEEEEEEEEEE
Q 041904 241 -PNTKLLTKYFLCVENQMNGKNSEVEG-----EWLYTL----TNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLH 310 (317)
Q Consensus 241 -~~~~~~~~~~l~l~n~~~~~~~~~~~-----~~~F~~----~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~ 310 (317)
..|++.++|+|.|+||.++++..... .+.|.. .+.+|||++||++++|++ .+|||+||+|+|+|+|+|.
T Consensus 112 ~~~W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~ 190 (192)
T 1ca9_A 112 LLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLT 190 (192)
T ss_dssp GSCSSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCT
T ss_pred cCCCceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEec
Confidence 68999999999999999875443221 123542 246899999999999995 3799999999999999885
Q ss_pred e
Q 041904 311 G 311 (317)
Q Consensus 311 ~ 311 (317)
+
T Consensus 191 ~ 191 (192)
T 1ca9_A 191 G 191 (192)
T ss_dssp T
T ss_pred C
Confidence 4
No 17
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=99.90 E-value=7.2e-24 Score=173.35 Aligned_cols=129 Identities=22% Similarity=0.246 Sum_probs=99.1
Q ss_pred CCceEEEEEeccccccc-----c--eeecccc--c--ceEeeeccCCceEEEEecCCCCCC-CCCeEEEEEE-ccCC-CC
Q 041904 174 PTYYHTWKVSNFSSLLD-----E--FYESESF--G--CYKWYANYSMDVKILLYPNGNGEA-KGNCISLFLD-VSQS-SI 239 (317)
Q Consensus 174 ~~~~~~~~i~nfs~~~~-----~--~~~S~~f--~--g~~W~~~~~~~~~i~~yp~g~~~~-~~~~lS~yL~-~~~~-~~ 239 (317)
..++|+|+|+|||.+++ + .+.|+.| | ||+| +|++||+|+..+ +++|||+||+ ++.. +.
T Consensus 3 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w--------~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~ 74 (160)
T 1lb6_A 3 CNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKL--------CMRLHLQLPTAQRCANYISLFVHTMQGEYDS 74 (160)
T ss_dssp CCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEE--------EEEEEECCTTCTTTTTEEEEEEEEECCTTGG
T ss_pred cCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeE--------EEEEEecCCCCCCCCCEEEEEEEEeecCCCc
Confidence 46789999999999863 3 8999999 8 9999 999999998765 3789999999 5432 22
Q ss_pred CCCCeEEEEEEEEEEECCCCCc---eeeee-----eEEeeCC-----CCCccccccccccccCCCCCCceeCCEEEEEEE
Q 041904 240 PPNTKLLTKYFLCVENQMNGKN---SEVEG-----EWLYTLT-----NRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAE 306 (317)
Q Consensus 240 ~~~~~~~~~~~l~l~n~~~~~~---~~~~~-----~~~F~~~-----~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~ 306 (317)
...|++.++|+|.|+||.+... ..... ...|... ..+|||++||++++|+. +|||+||+|+|+|+
T Consensus 75 ~l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~~--~~yl~dD~l~I~~~ 152 (160)
T 1lb6_A 75 HLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQ--RTFIKDDTLLVRCE 152 (160)
T ss_dssp GSCSSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGGT--SCCCBTTBEEEEEE
T ss_pred cCCCceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhhh--CCCccCCEEEEEEE
Confidence 4579999999999999986521 11111 0124321 23799999999999995 79999999999999
Q ss_pred EEEEee
Q 041904 307 VTLHGL 312 (317)
Q Consensus 307 V~v~~~ 312 (317)
|.|+..
T Consensus 153 V~v~~~ 158 (160)
T 1lb6_A 153 VSTRFD 158 (160)
T ss_dssp EEC---
T ss_pred EEEeec
Confidence 999864
No 18
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.89 E-value=1.9e-24 Score=182.23 Aligned_cols=132 Identities=23% Similarity=0.264 Sum_probs=106.2
Q ss_pred CCCCceEEEEEeccccccc-------ceeecccc--c--ceEeeeccCCceEEEEecCCCCCCCCCeEEEEEE-ccCC-C
Q 041904 172 DPPTYYHTWKVSNFSSLLD-------EFYESESF--G--CYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD-VSQS-S 238 (317)
Q Consensus 172 ~~~~~~~~~~i~nfs~~~~-------~~~~S~~f--~--g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~-~~~~-~ 238 (317)
....++|+|+|+|||.+++ +.+.|+.| | ||+| +|.+||+|+..++++|||+||+ ++.. +
T Consensus 36 ~~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W--------~i~~yPnG~~~~~~~~lSlyL~l~~g~~D 107 (198)
T 4ghu_A 36 ASYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM--------CARVYLNGDGMGKGTHLSLFFVIMRGEYD 107 (198)
T ss_dssp CCSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEE--------EEEEETTCCGGGTTTEEEEEEEEECCTTG
T ss_pred cccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEE--------EEEEEeCCCCCCCCCeEEEEEEecCCccC
Confidence 3567899999999999874 58999999 8 9999 9999999998777899999999 5432 2
Q ss_pred CCCCCeEEEEEEEEEEECCCCC-ceeeee-----eEEe----eCCCCCccccccccccccCCCCCCceeCCEEEEEEEEE
Q 041904 239 IPPNTKLLTKYFLCVENQMNGK-NSEVEG-----EWLY----TLTNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVT 308 (317)
Q Consensus 239 ~~~~~~~~~~~~l~l~n~~~~~-~~~~~~-----~~~F----~~~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~ 308 (317)
....|++.++|+|.|+||.++. +..... ...| ...+.+|||++||++++|++ +|||+||+|+|+|+|.
T Consensus 108 ~~l~wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~ 185 (198)
T 4ghu_A 108 ALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVD 185 (198)
T ss_dssp GGSCSSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTBEEEEEEEC
T ss_pred CCCCceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhhh--cCCeeCCEEEEEEEEE
Confidence 2358999999999999998653 322211 1123 23457899999999999995 7999999999999999
Q ss_pred EEeee
Q 041904 309 LHGLV 313 (317)
Q Consensus 309 v~~~~ 313 (317)
|+..+
T Consensus 186 v~~~~ 190 (198)
T 4ghu_A 186 TSDLP 190 (198)
T ss_dssp CTTCC
T ss_pred eccCC
Confidence 98654
No 19
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=99.89 E-value=2.8e-24 Score=180.74 Aligned_cols=129 Identities=24% Similarity=0.290 Sum_probs=104.7
Q ss_pred CCceEEEEEecccccc-----cc--eeecccc--c--ceEeeeccCCceEEEEecCCCCCCCCCeEEEEEE-ccCC-CCC
Q 041904 174 PTYYHTWKVSNFSSLL-----DE--FYESESF--G--CYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD-VSQS-SIP 240 (317)
Q Consensus 174 ~~~~~~~~i~nfs~~~-----~~--~~~S~~f--~--g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~-~~~~-~~~ 240 (317)
..++|+|+|+|||.++ ++ .+.|++| | ||+| +|.+||+|++.++++|||+||+ ++.. +..
T Consensus 38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw--------~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~ 109 (192)
T 2gkw_A 38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM--------CARVYLNGDGMGKGTHLSLFFVIMRGEYDAL 109 (192)
T ss_dssp CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEE--------EEEEETTCCGGGTTTEEEEEEEEECCTTGGG
T ss_pred cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEE--------EEEEEeCCCCCCCCCEEEEEEEEecCCCCcc
Confidence 6789999999999987 23 5899999 7 9999 9999999987777899999999 5433 223
Q ss_pred CCCeEEEEEEEEEEECCCCC-ceeeee-----eEEeeCC----CCCccccccccccccCCCCCCceeCCEEEEEEEEEEE
Q 041904 241 PNTKLLTKYFLCVENQMNGK-NSEVEG-----EWLYTLT----NRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLH 310 (317)
Q Consensus 241 ~~~~~~~~~~l~l~n~~~~~-~~~~~~-----~~~F~~~----~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~ 310 (317)
..|++.++|+|.|+||.++. +..... .+.|... +.+|||++||++++|++ +|||+||+|+|+|+|.|.
T Consensus 110 l~wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~~--~gyl~dD~l~I~~~V~v~ 187 (192)
T 2gkw_A 110 LPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDTS 187 (192)
T ss_dssp SCSSCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHHH--TTSCBTTEEEEEEEECCT
T ss_pred CCCcEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhCc--CCCeeCCEEEEEEEEEcC
Confidence 57999999999999998864 332221 1457542 46899999999999996 699999999999999875
Q ss_pred ee
Q 041904 311 GL 312 (317)
Q Consensus 311 ~~ 312 (317)
+.
T Consensus 188 ~~ 189 (192)
T 2gkw_A 188 DL 189 (192)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.88 E-value=1.8e-22 Score=182.63 Aligned_cols=126 Identities=23% Similarity=0.423 Sum_probs=103.9
Q ss_pred CceEEEEEecccccc---cceeecccc--cc---eEeeeccCCceEEEEecCCCCCCCCCeEEEEEEccCCCCCCCCeEE
Q 041904 175 TYYHTWKVSNFSSLL---DEFYESESF--GC---YKWYANYSMDVKILLYPNGNGEAKGNCISLFLDVSQSSIPPNTKLL 246 (317)
Q Consensus 175 ~~~~~~~i~nfs~~~---~~~~~S~~f--~g---~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~~~~~~~~~~~~~~ 246 (317)
.++|+|+|+|||.++ ++.+.|+.| || ++| +|.+||+|+...+++|+|+||++.. ...|++.
T Consensus 6 ~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W--------~i~~yP~G~~~~~~~~lslyL~~~~---~~~~~v~ 74 (312)
T 3hqi_A 6 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW--------CLRVNPKGLDEESKDYLSLYLLLVS---CPKSEVR 74 (312)
T ss_dssp EEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEE--------EEEEETTCCC--CTTEEEEEEEEEE---CCC-CEE
T ss_pred EEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceE--------EEEEECCCCCccCCCcEEEEEEEcC---CCCCcEE
Confidence 468999999999997 678999999 77 599 9999999987767799999999542 2478999
Q ss_pred EEEEEEEEECCCCCceee--eeeEEeeCCCCCccccccccccccCCCCCCceeCCEEEEEEEEEEEee
Q 041904 247 TKYFLCVENQMNGKNSEV--EGEWLYTLTNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLHGL 312 (317)
Q Consensus 247 ~~~~l~l~n~~~~~~~~~--~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~~~ 312 (317)
++|+|.|+||+++..... ...+.|.. +.+|||++||+|++|+++.+|||+||+++|+|+|+|++.
T Consensus 75 a~~~~~l~~~~~~~~~~~~~~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~ 141 (312)
T 3hqi_A 75 AKFKFSILNAKGEETKAMESQRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQD 141 (312)
T ss_dssp EEEEEEEECTTSCEEEEEECSSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCcccccccCCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEec
Confidence 999999999988664432 35678874 468999999999999887789999999999999999953
No 21
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=99.88 E-value=2.6e-23 Score=179.33 Aligned_cols=131 Identities=24% Similarity=0.286 Sum_probs=106.2
Q ss_pred CCCceEEEEEeccccccc-------ceeecccc--c--ceEeeeccCCceEEEEecCCCCCCCCCeEEEEEE-ccCC-CC
Q 041904 173 PPTYYHTWKVSNFSSLLD-------EFYESESF--G--CYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD-VSQS-SI 239 (317)
Q Consensus 173 ~~~~~~~~~i~nfs~~~~-------~~~~S~~f--~--g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~-~~~~-~~ 239 (317)
...++|+|+|+|||.+++ ..+.|++| | ||+| +|.+||+|+..++++|||+||+ ++.. +.
T Consensus 73 ~~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w--------~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~ 144 (228)
T 1flk_A 73 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM--------CARVYLNGDGMGKGTHLSLFFVIMRGEYDA 144 (228)
T ss_dssp CSSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEE--------CEEEETTCCGGGTTTEEEEEECCBCCTTTT
T ss_pred CcCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEE--------EEEEEcCCCCCCCCCEEEEEEEEecCCccc
Confidence 367899999999999863 27899999 7 9999 9999999988777899999999 5433 33
Q ss_pred CCCCeEEEEEEEEEEECCCCC-ceeee-----eeEEeeC----CCCCccccccccccccCCCCCCceeCCEEEEEEEEEE
Q 041904 240 PPNTKLLTKYFLCVENQMNGK-NSEVE-----GEWLYTL----TNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTL 309 (317)
Q Consensus 240 ~~~~~~~~~~~l~l~n~~~~~-~~~~~-----~~~~F~~----~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v 309 (317)
...|++.++|+|.|+||.++. +.... ..+.|.. .+.+|||++||++++|++ +|||+||+|+|+|+|.|
T Consensus 145 ~l~Wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~~--~gyL~dD~l~I~~~V~v 222 (228)
T 1flk_A 145 LLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLEN--GTYIKDDTIFIKVIVDT 222 (228)
T ss_dssp SSCSSCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHSS--STTCCSSEEEEEEECCC
T ss_pred cCCCcEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHcc--CCCccCCEEEEEEEEEc
Confidence 458999999999999998765 33221 1224642 246899999999999996 79999999999999998
Q ss_pred Eeee
Q 041904 310 HGLV 313 (317)
Q Consensus 310 ~~~~ 313 (317)
.+..
T Consensus 223 ~~~~ 226 (228)
T 1flk_A 223 SDLP 226 (228)
T ss_dssp TTSC
T ss_pred cccc
Confidence 7653
No 22
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=194.23 Aligned_cols=134 Identities=18% Similarity=0.232 Sum_probs=110.5
Q ss_pred CCCceEEEEEecccccccceeecccc--cceEeeeccCCceEEEEecCCCCCC-CCCeEEEEEEccCCCCCCCCeEEEEE
Q 041904 173 PPTYYHTWKVSNFSSLLDEFYESESF--GCYKWYANYSMDVKILLYPNGNGEA-KGNCISLFLDVSQSSIPPNTKLLTKY 249 (317)
Q Consensus 173 ~~~~~~~~~i~nfs~~~~~~~~S~~f--~g~~W~~~~~~~~~i~~yp~g~~~~-~~~~lS~yL~~~~~~~~~~~~~~~~~ 249 (317)
...++|+|+|+|||.+++ .+.|++| ||++| +|.+||+|+..+ +++|||+||.+.....+..|.+.|+|
T Consensus 28 ~~~~~~~w~I~nfS~~~~-~~~S~~F~vgg~~W--------~i~~yP~G~~~~~~~~~lSlyL~~~~~~~~~~w~v~a~f 98 (522)
T 2f1z_A 28 RSEATFQFTVERFSRLSE-SVLSPPCFVRNLPW--------KIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQA 98 (522)
T ss_dssp CSEEEEEEEESSCTTCCS-CEECCCEEETTEEE--------EEEECBC--------CBBCEEEEESTTCCCSSCBEEEEE
T ss_pred cCCcEEEEEECChhhcCC-ceeCCCEEECCEee--------EEEEEeCCCCCCCCCCeEEEEEEecCCCCCCCceEEEEE
Confidence 456899999999999986 8889999 99999 999999997543 56899999995433556789999999
Q ss_pred EEEEEECCCCC-ceeeeeeEEeeCCCCCccccccccccccCCCCCCceeCCEEEEEEEEEEEeeecc
Q 041904 250 FLCVENQMNGK-NSEVEGEWLYTLTNRAIGGRQFMTLAKLKDPTEGYLVDDSCIIKAEVTLHGLVLA 315 (317)
Q Consensus 250 ~l~l~n~~~~~-~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~gyl~dd~l~i~~~V~v~~~~~~ 315 (317)
+|.|+|+.++. +..+...++|.....+|||++||++++|.++++|||+||+++|+|+|+|...+|+
T Consensus 99 ~l~l~n~~~~~~~~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~ 165 (522)
T 2f1z_A 99 VLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV 165 (522)
T ss_dssp EEEECCTTCGGGCEEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSS
T ss_pred EEEEEcCCCCccceeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccc
Confidence 99999998765 3455677889876788999999999999877789999999999999999776654
No 23
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.55 E-value=7.7e-15 Score=141.18 Aligned_cols=147 Identities=13% Similarity=0.142 Sum_probs=110.5
Q ss_pred eccccCCcEEEEEEcCcccccccccceEEcccEEe-CCeEEEEEEEecCCCCCCCCCcEEEEEEeccCCC-CCCCCEEE-
Q 041904 10 AGRNAAPSHYLFKIESFSLLSKASVEQLILDNFEA-GGYKWKLSIHLTGSKSVNVTDHISIYLELAETSS-LPTGWEVN- 86 (317)
Q Consensus 10 ~~~~~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~~-gG~~W~l~~~p~G~~~~~~~~~lSvyL~~~~~~~-~~~~w~v~- 86 (317)
.+.+.+|+.+.|+|.||++++...+..++||+|+. .||+++|.++|++ ..|+|+|+++.++.. ..++||+.
T Consensus 399 s~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~~v~l~~~~------~~~~~~~~~l~sG~~D~~L~WP~~~ 472 (592)
T 4gwm_A 399 NLSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAFQIYLNLAH------VTNAGIYFHLISGANDDQLQWPCPW 472 (592)
T ss_dssp EEESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEEEEEEECCS------SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred EEeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEEEEEEecCC------CceEEEEEEEecCCCCCCccCCCCC
Confidence 35778999999999999999874567899999997 5999999999874 478999999999876 47899994
Q ss_pred EEEEEEEEecCCCcEEE---EEee----ecccceeeeecc-----------------cccccccccceeecccccCCCCc
Q 041904 87 AITISFYSIKFKTNILV---SKVR----NSTINVIVKHFH-----------------AMKSKYGVAKFIDLKTFSDPLNG 142 (317)
Q Consensus 87 ~~f~~~l~n~~~~~~~~---~~~~----~~~~~~~~~~F~-----------------~~~~~~G~~~fi~~~~l~~~~~~ 142 (317)
-+++|.|+||+...... .... ..+.+.....|. ..+.+|||+.||++++|+ +++
T Consensus 473 ~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~ 550 (592)
T 4gwm_A 473 QQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRD 550 (592)
T ss_dssp EEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STT
T ss_pred CEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcC
Confidence 78999999997543321 1110 000000111121 124579999999999998 678
Q ss_pred eEeCCEEEEEEEEEEEeecCcc
Q 041904 143 YLINDACVFGAEVFVVKNTFKG 164 (317)
Q Consensus 143 yl~~d~l~i~~~v~v~~~~~~~ 164 (317)
||+||.|.|.+.|+-+......
T Consensus 551 fiK~d~~~i~~~~eD~~~l~~~ 572 (592)
T 4gwm_A 551 FIKGDDVYILLTVEDISHLNST 572 (592)
T ss_dssp SSBTTBEEEEEEEEECGGGSSC
T ss_pred cccCCeEEEEEEEEeCcccccc
Confidence 9999999999999876554433
No 24
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*
Probab=99.20 E-value=3.8e-11 Score=115.62 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=96.8
Q ss_pred cCCCCceEEEEEecccccc---cceeecccc---cceEeeeccCCceEEEEecCCCCCCCCCeEEEEEE-cc-CCCCCCC
Q 041904 171 HDPPTYYHTWKVSNFSSLL---DEFYESESF---GCYKWYANYSMDVKILLYPNGNGEAKGNCISLFLD-VS-QSSIPPN 242 (317)
Q Consensus 171 ~~~~~~~~~~~i~nfs~~~---~~~~~S~~f---~g~~W~~~~~~~~~i~~yp~g~~~~~~~~lS~yL~-~~-~~~~~~~ 242 (317)
...++..+.|+|.||+++. +..++||.| .||.+ +|.+||++ ..++|+|++ +. ..+.-..
T Consensus 401 t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~--------~v~l~~~~-----~~~~~~~~~l~sG~~D~~L~ 467 (592)
T 4gwm_A 401 SETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAF--------QIYLNLAH-----VTNAGIYFHLISGANDDQLQ 467 (592)
T ss_dssp ESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEE--------EEEEECCS-----SSEEEEEEEEECCTTGGGSC
T ss_pred eeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEE--------EEEEecCC-----CceEEEEEEEecCCCCCCcc
Confidence 3456678999999999987 458999999 99999 99999975 469999999 54 4444589
Q ss_pred CeE-EEEEEEEEEECCCCCceeeeeeEEeeC--------------------------------CCCCccccccccccccC
Q 041904 243 TKL-LTKYFLCVENQMNGKNSEVEGEWLYTL--------------------------------TNRAIGGRQFMTLAKLK 289 (317)
Q Consensus 243 ~~~-~~~~~l~l~n~~~~~~~~~~~~~~F~~--------------------------------~~~~~G~~~fi~~~~L~ 289 (317)
|++ .-+++|.|++|+......+.....|.. .+.+|||+.||+++.|.
T Consensus 468 WP~~~~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~ 547 (592)
T 4gwm_A 468 WPCPWQQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK 547 (592)
T ss_dssp SSCCSEEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT
T ss_pred CCCCCCEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh
Confidence 999 578999999997543222222222321 12358999999999999
Q ss_pred CCCCCceeCCEEEEEEEEEEE
Q 041904 290 DPTEGYLVDDSCIIKAEVTLH 310 (317)
Q Consensus 290 ~~~~gyl~dd~l~i~~~V~v~ 310 (317)
. +.||+||.|.|.+.|+-+
T Consensus 548 ~--r~fiK~d~~~i~~~~eD~ 566 (592)
T 4gwm_A 548 S--RDFIKGDDVYILLTVEDI 566 (592)
T ss_dssp S--TTSSBTTBEEEEEEEEEC
T ss_pred h--cCcccCCeEEEEEEEEeC
Confidence 6 679999999999999654
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=27.65 E-value=12 Score=28.14 Aligned_cols=30 Identities=17% Similarity=0.158 Sum_probs=22.2
Q ss_pred cCCcEEEEEEcCcccccccccceEEcccEEe
Q 041904 14 AAPSHYLFKIESFSLLSKASVEQLILDNFEA 44 (317)
Q Consensus 14 ~~~~~~~w~I~~fs~~~~~~~~~~~S~~F~~ 44 (317)
+.+|.+.|+|.+|+..+. .|..+-|-.|.+
T Consensus 9 ~~~gd~vwkIs~F~~RKp-eGty~nsvsFnI 38 (133)
T 3v0r_A 9 TTEGDYVWKISEFYGRKP-EGTYYNSLGFNI 38 (133)
T ss_dssp CCCCTTEEEEEEEEEEET-TSSSCSEEEEEE
T ss_pred ccCCceEEEeeeeeeEcC-CCCceeeEEEEE
Confidence 567889999999998875 455666666654
Done!