BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041905
         (191 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
 pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
 pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3 Peptide 1-7
 pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3 Peptide 1-15
 pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3k9me3 Peptide
 pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
          Complexed With H3k9me3 Peptide
          Length = 107

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 3/81 (3%)

Query: 3  RKKRLTKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHY 62
          RK +   +++ E++C+ C DGG+L +CD   CPK YH  C++  +       KW C WH 
Sbjct: 4  RKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQP---PYGKWECPWHQ 60

Query: 63 CHVCGKASKFYCLCCPSAVCK 83
          C  C  A+  +C  CP + CK
Sbjct: 61 CDECSSAAVSFCEFCPHSFCK 81


>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4
          (Mi2b)
          Length = 61

 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 14 ENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTC 58
          +++C VC+ GG++ LCD   CP+ YH  C+D D      E KW+C
Sbjct: 11 QDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDME-KAPEGKWSC 52


>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
 pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(13-32)k23ac Peptide
 pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(23-31)k27ac Peptide
 pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(23-31)k27ac Peptide
 pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H4(14-19)k16ac Peptide
 pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H4(14-19)k16ac Peptide
 pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
 pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
 pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
 pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
          H3(1-10)k4 Peptide
          Length = 184

 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 5/49 (10%)

Query: 13 SENWCYVCKDGGKLRLCDHLRCPKVYHSEC-VDKDESFLVAETKWTCNW 60
          +E+WC VC++GG+L  C+  +CPKV+H  C V    +F   E  W C +
Sbjct: 3  NEDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLTNFPSGE--WICTF 47


>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
 pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-20) K9me3k14ac Histone Peptide
 pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-22) K9me3k14ack18ac Histone Peptide
 pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
 pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
          H3(1-28) K9me3k14ack18ack23ac Histone Peptide
          Length = 207

 Score = 37.4 bits (85), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 8  TKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSEC-VDKDESFLVAETKWTCNWHYCHVC 66
          + ++ +E+WC VC++GG L  C+  +CPKV+H  C V    SF   +  W C   +C   
Sbjct: 1  SDDDPNEDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLLSFPSGD--WICT--FCRDI 54

Query: 67 GKASKFY 73
          GK    Y
Sbjct: 55 GKPEVEY 61


>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
 pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
          Length = 60

 Score = 35.0 bits (79), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 12 ISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTC 58
          I E++C VC+  G+L +CD   C +VYH +C+D      + +  W C
Sbjct: 3  IHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLK-TIPKGMWIC 46


>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With
          C- Terminal Loop Replaced By Corresponding Loop From
          Wstf
          Length = 61

 Score = 34.7 bits (78), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 15 NWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTC 58
           +C VCKDGG+L  CD   CP  YH  C+ +   + V + +W C
Sbjct: 10 EFCRVCKDGGELLCCD--TCPSSYHIHCL-RPALYEVPDGEWQC 50


>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
          Regulator Protein (Aire1): Insights Into Apeced
 pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
          Recognition By The First Phd Finger Of Autoimmune
          Regulator
          Length = 66

 Score = 33.5 bits (75), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 13 SENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59
          +E+ C VC+DGG+L  CD   CP+ +H  C+      + + T W C+
Sbjct: 7  NEDECAVCRDGGELICCDG--CPRAFHLACLSPPLREIPSGT-WRCS 50


>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger
          Protein 21a
          Length = 56

 Score = 33.1 bits (74), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 14 ENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTC 58
          E++C VC+  G+L +CD   C +VYH +C+D      + +  W C
Sbjct: 9  EDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLK-TIPKGMWIC 50


>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
 pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
          Length = 61

 Score = 32.7 bits (73), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 16 WCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTC 58
          +C VCKDGG+L  CD   CP  YH  C++      +   +W C
Sbjct: 11 FCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPE-IPNGEWLC 50


>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
          Human Autoimmune Regulator (Aire) In Complex With
          Histone H3(1-20cys) Peptide
          Length = 56

 Score = 30.0 bits (66), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 13 SENWCYVCKDGGKLRLCDHLRCPKVYHSECV 43
          +E+ C VC+DGG+L  CD   CP+ +H  C+
Sbjct: 4  NEDECAVCRDGGELICCDG--CPRAFHLACL 32


>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
 pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
          Length = 300

 Score = 28.9 bits (63), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)

Query: 110 LIETNKDVKSVGCNIDVNHP---KTTDYFFNGYWQTIKQKEGLTSKNVIL-AYDLS---- 161
           L+   + V  +G N ++  P    TTD F N Y++ + + +GL S + IL + DL+    
Sbjct: 196 LLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTT 255

Query: 162 -KKGEMHKRASNAFESD 177
            K  E + R+ + F  D
Sbjct: 256 KKLVEAYSRSQSLFFRD 272


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,109,433
Number of Sequences: 62578
Number of extensions: 237850
Number of successful extensions: 451
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 31
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)