Query 041905
Match_columns 191
No_of_seqs 225 out of 931
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gne_A Histone-lysine N-methyl 99.9 1.1E-24 3.6E-29 164.2 5.4 95 3-101 4-98 (107)
2 2ysm_A Myeloid/lymphoid or mix 99.9 2.6E-23 9E-28 156.3 4.7 91 11-105 4-102 (111)
3 2kwj_A Zinc finger protein DPF 99.8 4.7E-22 1.6E-26 150.7 2.3 94 14-110 1-111 (114)
4 3v43_A Histone acetyltransfera 99.8 5.4E-21 1.9E-25 144.4 2.1 90 13-105 4-110 (112)
5 1mm2_A MI2-beta; PHD, zinc fin 99.5 4.1E-14 1.4E-18 96.0 4.0 51 9-62 4-54 (61)
6 1fp0_A KAP-1 corepressor; PHD 99.4 7.9E-14 2.7E-18 101.3 4.1 50 8-60 19-68 (88)
7 1xwh_A Autoimmune regulator; P 99.4 6.6E-14 2.3E-18 96.3 3.3 48 10-60 4-51 (66)
8 2l5u_A Chromodomain-helicase-D 99.4 8E-14 2.8E-18 94.5 2.4 49 9-60 6-54 (61)
9 2puy_A PHD finger protein 21A; 99.4 1.1E-13 3.7E-18 93.3 2.8 48 11-61 2-49 (60)
10 2yql_A PHD finger protein 21A; 99.4 1.5E-13 5E-18 91.6 3.2 48 10-60 5-52 (56)
11 2lri_C Autoimmune regulator; Z 99.3 3E-13 1E-17 93.3 2.5 48 10-60 8-55 (66)
12 3o36_A Transcription intermedi 99.3 1.3E-12 4.5E-17 105.5 3.3 46 12-60 2-47 (184)
13 3u5n_A E3 ubiquitin-protein li 99.3 1.7E-12 5.8E-17 106.8 3.1 48 9-59 2-49 (207)
14 3asl_A E3 ubiquitin-protein li 99.2 4.2E-12 1.4E-16 88.4 3.2 53 52-105 10-67 (70)
15 2lbm_A Transcriptional regulat 99.2 2.3E-12 7.9E-17 101.1 1.5 51 8-60 57-113 (142)
16 3shb_A E3 ubiquitin-protein li 99.2 5.7E-12 2E-16 89.3 2.9 53 52-105 18-75 (77)
17 2e6r_A Jumonji/ARID domain-con 99.2 4.5E-12 1.5E-16 92.5 2.5 60 7-69 9-71 (92)
18 2e6s_A E3 ubiquitin-protein li 99.2 1.6E-11 5.3E-16 87.0 3.7 52 53-105 19-75 (77)
19 2yt5_A Metal-response element- 99.1 1E-11 3.5E-16 84.8 2.1 49 10-60 2-57 (66)
20 1f62_A Transcription factor WS 99.1 1E-11 3.4E-16 80.8 1.9 43 15-60 1-46 (51)
21 2ro1_A Transcription intermedi 99.1 1.4E-11 4.9E-16 100.4 2.7 47 13-62 1-47 (189)
22 2ku3_A Bromodomain-containing 99.1 1.5E-11 5E-16 85.9 1.8 46 10-60 12-62 (71)
23 2l43_A N-teminal domain from h 99.1 1.9E-11 6.6E-16 88.5 2.2 45 12-61 23-72 (88)
24 3ql9_A Transcriptional regulat 99.1 1.1E-11 3.7E-16 95.9 0.6 52 8-61 51-108 (129)
25 2e6s_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 84.6 3.5 45 13-60 25-73 (77)
26 3asl_A E3 ubiquitin-protein li 99.1 6.4E-11 2.2E-15 82.3 2.9 42 16-60 20-65 (70)
27 2puy_A PHD finger protein 21A; 99.0 6.1E-11 2.1E-15 79.7 2.6 49 62-111 7-56 (60)
28 1wev_A Riken cDNA 1110020M19; 99.0 5.5E-11 1.9E-15 86.1 1.6 47 12-60 14-68 (88)
29 1mm2_A MI2-beta; PHD, zinc fin 99.0 1.5E-10 5E-15 78.3 3.2 43 62-105 11-54 (61)
30 2lri_C Autoimmune regulator; Z 99.0 8.3E-11 2.8E-15 81.0 1.8 44 61-105 13-57 (66)
31 1fp0_A KAP-1 corepressor; PHD 99.0 2.1E-10 7.2E-15 83.2 2.9 51 54-105 18-70 (88)
32 2yql_A PHD finger protein 21A; 99.0 1.6E-10 5.3E-15 76.8 1.9 43 62-105 11-54 (56)
33 1xwh_A Autoimmune regulator; P 99.0 1.8E-10 6E-15 79.0 2.0 43 62-105 10-53 (66)
34 1f62_A Transcription factor WS 98.9 1.9E-10 6.7E-15 74.7 1.7 43 62-105 2-48 (51)
35 2e6r_A Jumonji/ARID domain-con 98.9 3.4E-10 1.2E-14 82.5 2.6 54 52-106 7-65 (92)
36 3ask_A E3 ubiquitin-protein li 98.9 3.5E-10 1.2E-14 94.8 3.0 53 52-105 166-223 (226)
37 2l5u_A Chromodomain-helicase-D 98.9 2.5E-10 8.4E-15 77.2 1.7 44 62-106 13-57 (61)
38 2ysm_A Myeloid/lymphoid or mix 98.9 7.7E-10 2.6E-14 82.5 2.6 49 16-69 56-107 (111)
39 3shb_A E3 ubiquitin-protein li 98.8 1.6E-09 5.5E-14 76.7 2.9 42 16-60 28-73 (77)
40 3v43_A Histone acetyltransfera 98.8 1.7E-09 5.9E-14 81.1 3.1 42 16-60 63-108 (112)
41 2kwj_A Zinc finger protein DPF 98.8 1.8E-09 6E-14 81.3 2.5 41 16-59 60-103 (114)
42 1wev_A Riken cDNA 1110020M19; 98.8 1E-09 3.5E-14 79.3 0.7 47 61-108 17-73 (88)
43 3ask_A E3 ubiquitin-protein li 98.7 3.4E-09 1.2E-13 88.8 2.7 45 14-61 174-222 (226)
44 2yt5_A Metal-response element- 98.7 3.9E-09 1.3E-13 71.8 1.4 44 61-105 7-59 (66)
45 3o36_A Transcription intermedi 98.7 6.4E-09 2.2E-13 83.8 2.9 44 62-106 6-50 (184)
46 3u5n_A E3 ubiquitin-protein li 98.7 7.6E-09 2.6E-13 84.9 2.8 43 62-105 9-52 (207)
47 2ro1_A Transcription intermedi 98.6 1.1E-08 3.6E-13 83.3 3.3 44 61-105 3-47 (189)
48 2k16_A Transcription initiatio 98.6 8.7E-09 3E-13 71.8 2.3 48 10-60 14-64 (75)
49 3c6w_A P28ING5, inhibitor of g 98.6 8.8E-09 3E-13 69.2 2.0 46 11-60 6-54 (59)
50 2vnf_A ING 4, P29ING4, inhibit 98.6 9.5E-09 3.2E-13 69.2 2.0 44 11-60 7-55 (60)
51 1wen_A Inhibitor of growth fam 98.6 1.6E-08 5.5E-13 70.3 3.0 44 11-60 13-61 (71)
52 2g6q_A Inhibitor of growth pro 98.6 1.6E-08 5.6E-13 68.6 2.0 44 11-60 8-56 (62)
53 2ku3_A Bromodomain-containing 98.5 1.7E-08 5.9E-13 70.2 0.4 42 62-106 18-65 (71)
54 1weu_A Inhibitor of growth fam 98.5 5.2E-08 1.8E-12 71.0 2.9 46 11-60 33-81 (91)
55 2l43_A N-teminal domain from h 98.5 2.6E-08 9E-13 71.9 1.2 42 62-106 27-74 (88)
56 2jmi_A Protein YNG1, ING1 homo 98.4 1.3E-07 4.4E-12 68.7 2.7 47 10-60 22-71 (90)
57 4gne_A Histone-lysine N-methyl 98.3 2.4E-07 8.1E-12 69.3 2.7 42 61-105 16-60 (107)
58 2lv9_A Histone-lysine N-methyl 98.3 4E-07 1.4E-11 66.7 3.2 39 17-59 33-71 (98)
59 2lbm_A Transcriptional regulat 98.2 1.7E-07 5.7E-12 73.4 0.4 44 61-105 64-115 (142)
60 2k16_A Transcription initiatio 98.2 5E-07 1.7E-11 62.7 1.8 44 62-106 20-67 (75)
61 3ql9_A Transcriptional regulat 98.0 7.4E-07 2.5E-11 68.7 -0.0 68 26-105 34-109 (129)
62 1wil_A KIAA1045 protein; ring 97.8 4E-06 1.4E-10 60.1 1.0 50 8-59 9-71 (89)
63 2vnf_A ING 4, P29ING4, inhibit 97.8 4.7E-06 1.6E-10 55.9 0.7 38 65-105 14-57 (60)
64 1wen_A Inhibitor of growth fam 97.8 1.3E-05 4.3E-10 55.6 2.8 38 65-105 20-63 (71)
65 1x4i_A Inhibitor of growth pro 97.7 8.8E-06 3E-10 56.2 1.6 46 11-60 3-51 (70)
66 2lv9_A Histone-lysine N-methyl 97.7 1.6E-05 5.5E-10 58.1 2.8 42 62-105 32-74 (98)
67 1we9_A PHD finger family prote 97.7 2.2E-05 7.6E-10 52.7 2.9 48 10-59 2-53 (64)
68 3c6w_A P28ING5, inhibitor of g 97.7 8.6E-06 2.9E-10 54.4 0.7 38 65-105 13-56 (59)
69 2ri7_A Nucleosome-remodeling f 97.7 6.6E-06 2.3E-10 65.2 0.0 46 11-59 5-54 (174)
70 3a1b_A DNA (cytosine-5)-methyl 97.6 8.2E-06 2.8E-10 64.8 0.1 51 8-58 73-128 (159)
71 2g6q_A Inhibitor of growth pro 97.6 1.1E-05 3.8E-10 54.4 0.7 38 65-105 15-58 (62)
72 2jmi_A Protein YNG1, ING1 homo 97.6 2.4E-05 8.1E-10 56.7 2.4 41 65-108 30-77 (90)
73 1weu_A Inhibitor of growth fam 97.6 3.2E-05 1.1E-09 56.1 3.1 38 65-105 40-83 (91)
74 4bbq_A Lysine-specific demethy 97.5 3.1E-05 1.1E-09 57.6 2.0 85 15-106 8-113 (117)
75 2pv0_B DNA (cytosine-5)-methyl 97.0 8.2E-05 2.8E-09 66.6 -0.4 51 8-58 87-142 (386)
76 1wep_A PHF8; structural genomi 97.0 0.00019 6.4E-09 50.2 1.5 46 11-59 9-58 (79)
77 1x4i_A Inhibitor of growth pro 97.0 0.00025 8.6E-09 48.8 1.7 49 53-107 4-55 (70)
78 2ri7_A Nucleosome-remodeling f 97.0 6E-05 2.1E-09 59.6 -1.7 79 71-150 23-116 (174)
79 3o70_A PHD finger protein 13; 96.9 0.00042 1.4E-08 47.4 2.6 45 10-59 15-62 (68)
80 1wee_A PHD finger family prote 96.9 0.00051 1.8E-08 47.1 2.5 46 10-59 12-61 (72)
81 1wew_A DNA-binding family prot 96.8 0.00054 1.9E-08 47.8 2.4 46 13-59 15-67 (78)
82 2rsd_A E3 SUMO-protein ligase 96.7 0.00077 2.6E-08 45.8 2.6 46 13-59 9-60 (68)
83 1wil_A KIAA1045 protein; ring 96.7 0.00038 1.3E-08 49.8 0.9 48 61-108 16-77 (89)
84 1wem_A Death associated transc 96.7 0.00025 8.7E-09 49.1 -0.1 46 11-59 13-65 (76)
85 2xb1_A Pygopus homolog 2, B-ce 96.2 0.0011 3.8E-08 48.9 0.9 44 15-59 4-56 (105)
86 1we9_A PHD finger family prote 96.2 0.0019 6.4E-08 43.0 1.9 43 64-106 10-57 (64)
87 2kgg_A Histone demethylase jar 95.8 0.0025 8.4E-08 41.0 0.9 42 17-60 5-50 (52)
88 2vpb_A Hpygo1, pygopus homolog 95.7 0.0018 6E-08 43.9 0.1 49 11-60 5-62 (65)
89 3a1b_A DNA (cytosine-5)-methyl 95.7 0.00031 1E-08 55.8 -4.4 93 14-117 36-146 (159)
90 2xb1_A Pygopus homolog 2, B-ce 95.6 0.0028 9.4E-08 46.7 0.8 45 62-106 5-60 (105)
91 3o7a_A PHD finger protein 13 v 95.4 0.0086 2.9E-07 38.4 2.6 33 23-59 15-47 (52)
92 3o70_A PHD finger protein 13; 95.3 0.0058 2E-07 41.6 1.4 33 71-105 33-65 (68)
93 1wee_A PHD finger family prote 95.2 0.0056 1.9E-07 41.8 1.2 35 71-106 31-65 (72)
94 3kqi_A GRC5, PHD finger protei 95.2 0.0065 2.2E-07 41.8 1.4 44 13-59 9-56 (75)
95 2vpb_A Hpygo1, pygopus homolog 95.0 0.0029 1E-07 42.8 -0.6 44 62-105 10-64 (65)
96 1wep_A PHF8; structural genomi 94.7 0.0087 3E-07 41.5 0.9 36 71-106 27-62 (79)
97 2kgg_A Histone demethylase jar 94.5 0.015 5.1E-07 37.3 1.7 42 63-105 5-52 (52)
98 1wem_A Death associated transc 94.1 0.0085 2.9E-07 41.2 -0.1 42 65-106 20-69 (76)
99 2pv0_B DNA (cytosine-5)-methyl 94.1 0.0015 5.2E-08 58.4 -5.0 82 13-105 49-146 (386)
100 3kv5_D JMJC domain-containing 93.9 0.0095 3.2E-07 54.7 -0.3 46 11-59 34-83 (488)
101 3o7a_A PHD finger protein 13 v 93.7 0.023 8E-07 36.3 1.4 33 71-105 18-50 (52)
102 1wew_A DNA-binding family prot 93.6 0.017 5.9E-07 40.0 0.8 49 52-106 13-71 (78)
103 3kqi_A GRC5, PHD finger protei 92.6 0.022 7.4E-07 39.1 -0.0 37 71-107 25-61 (75)
104 4bbq_A Lysine-specific demethy 92.6 0.057 1.9E-06 39.6 2.3 34 25-60 74-110 (117)
105 2rsd_A E3 SUMO-protein ligase 92.0 0.044 1.5E-06 36.9 1.0 35 71-105 24-63 (68)
106 3lqh_A Histone-lysine N-methyl 91.5 0.031 1.1E-06 45.0 -0.3 43 15-59 3-58 (183)
107 2lq6_A Bromodomain-containing 91.5 0.061 2.1E-06 38.2 1.3 33 14-46 17-51 (87)
108 3pur_A Lysine-specific demethy 87.7 0.19 6.4E-06 46.6 1.7 34 25-60 57-90 (528)
109 2d8s_A Cellular modulator of i 86.7 0.44 1.5E-05 32.9 2.8 44 4-47 5-53 (80)
110 3lqh_A Histone-lysine N-methyl 85.4 0.19 6.6E-06 40.3 0.4 44 62-105 4-61 (183)
111 3kv4_A PHD finger protein 8; e 84.6 0.13 4.4E-06 46.7 -1.0 42 15-59 6-51 (447)
112 2kiz_A E3 ubiquitin-protein li 83.8 0.32 1.1E-05 31.6 0.9 45 1-47 1-48 (69)
113 3kv5_D JMJC domain-containing 82.0 0.2 7E-06 45.8 -0.8 37 71-107 52-88 (488)
114 3rsn_A SET1/ASH2 histone methy 77.9 1.5 5.1E-05 35.1 3.0 32 15-49 6-41 (177)
115 3pur_A Lysine-specific demethy 77.0 0.84 2.9E-05 42.2 1.6 37 71-107 58-94 (528)
116 2ku7_A MLL1 PHD3-CYP33 RRM chi 73.7 0.87 3E-05 33.0 0.6 35 26-62 2-42 (140)
117 1vyx_A ORF K3, K3RING; zinc-bi 72.6 0.67 2.3E-05 30.2 -0.2 38 10-47 2-42 (60)
118 3kv4_A PHD finger protein 8; e 70.4 0.46 1.6E-05 43.1 -1.9 36 71-106 20-55 (447)
119 2ecl_A Ring-box protein 2; RNF 70.4 0.67 2.3E-05 31.5 -0.6 35 11-47 12-61 (81)
120 2lq6_A Bromodomain-containing 69.8 1.7 5.8E-05 30.5 1.4 35 51-88 11-50 (87)
121 4ap4_A E3 ubiquitin ligase RNF 66.3 0.6 2.1E-05 33.6 -1.7 33 13-47 6-45 (133)
122 1iym_A EL5; ring-H2 finger, ub 64.5 2.1 7.3E-05 26.1 0.9 34 12-47 3-40 (55)
123 1x4j_A Ring finger protein 38; 63.4 1.6 5.4E-05 28.7 0.1 35 11-47 20-57 (75)
124 2ct0_A Non-SMC element 1 homol 61.5 2.4 8.2E-05 28.9 0.8 34 12-47 13-47 (74)
125 3nw0_A Non-structural maintena 59.2 2.6 9E-05 34.7 0.8 43 60-105 180-224 (238)
126 6rxn_A Rubredoxin; electron tr 54.3 8.7 0.0003 23.9 2.4 33 72-105 5-37 (46)
127 2h1e_A Chromo domain protein 1 54.2 1.5 5.2E-05 34.7 -1.4 36 131-166 46-87 (177)
128 2lk0_A RNA-binding protein 5; 52.7 6.1 0.00021 22.5 1.4 8 53-60 3-10 (32)
129 3dpl_R Ring-box protein 1; ubi 51.9 3.2 0.00011 29.9 0.1 34 12-47 35-86 (106)
130 4a0k_B E3 ubiquitin-protein li 51.1 3.5 0.00012 30.4 0.2 37 11-47 45-97 (117)
131 2k1p_A Zinc finger RAN-binding 50.5 7.2 0.00025 22.3 1.5 8 52-59 3-10 (33)
132 3pfq_A PKC-B, PKC-beta, protei 50.5 8.3 0.00028 35.8 2.7 73 14-88 48-147 (674)
133 3k1l_B Fancl; UBC, ring, RWD, 50.0 8.9 0.00031 34.0 2.7 37 10-46 304-346 (381)
134 1v5n_A PDI-like hypothetical p 48.4 6.3 0.00022 27.6 1.2 29 61-89 48-79 (89)
135 2l0b_A E3 ubiquitin-protein li 48.3 3.3 0.00011 28.4 -0.3 34 12-47 38-74 (91)
136 2zet_C Melanophilin; complex, 47.8 7.4 0.00025 30.1 1.7 54 60-117 68-127 (153)
137 2ect_A Ring finger protein 126 47.4 7.3 0.00025 25.4 1.4 35 11-47 12-49 (78)
138 1n0z_A ZNF265; zinc finger, RN 42.8 16 0.00055 22.4 2.3 28 51-78 10-37 (45)
139 2ep4_A Ring finger protein 24; 41.8 5.4 0.00019 25.8 0.0 36 10-47 11-49 (74)
140 1weo_A Cellulose synthase, cat 41.6 7 0.00024 28.0 0.5 41 61-105 17-65 (93)
141 2ecm_A Ring finger and CHY zin 41.5 10 0.00035 22.7 1.3 34 12-47 3-40 (55)
142 1zbd_B Rabphilin-3A; G protein 41.4 11 0.00038 28.4 1.7 56 61-117 56-117 (134)
143 1vfy_A Phosphatidylinositol-3- 40.0 17 0.00058 24.1 2.3 53 56-109 8-68 (73)
144 3rsn_A SET1/ASH2 histone methy 38.2 17 0.00059 28.8 2.4 41 66-106 10-58 (177)
145 1bor_A Transcription factor PM 37.8 31 0.0011 21.1 3.2 34 10-45 2-35 (56)
146 1r79_A Diacylglycerol kinase, 37.3 8.8 0.0003 26.8 0.5 27 61-87 39-72 (84)
147 2cup_A Skeletal muscle LIM-pro 35.9 31 0.001 23.4 3.2 28 14-45 5-36 (101)
148 3ng2_A RNF4, snurf, ring finge 35.6 7.5 0.00026 24.7 -0.1 35 11-47 7-48 (71)
149 3a9j_C Mitogen-activated prote 35.0 23 0.0008 20.0 2.0 26 52-79 5-30 (34)
150 3gj3_B Nuclear pore complex pr 33.7 23 0.00078 20.4 1.8 26 52-79 4-29 (33)
151 2b2y_A CHD-1, chromodomain-hel 32.9 11 0.00038 29.9 0.5 38 130-167 56-101 (187)
152 2d8v_A Zinc finger FYVE domain 32.1 14 0.00048 24.9 0.8 16 63-78 11-26 (67)
153 4rxn_A Rubredoxin; electron tr 29.6 38 0.0013 21.6 2.5 33 72-105 4-43 (54)
154 2d9g_A YY1-associated factor 2 29.0 40 0.0014 21.2 2.6 30 51-82 7-36 (53)
155 3k1l_B Fancl; UBC, ring, RWD, 28.6 22 0.00076 31.5 1.7 34 71-105 326-368 (381)
156 1v87_A Deltex protein 2; ring- 28.4 14 0.00046 25.9 0.3 33 13-47 24-74 (114)
157 1zfo_A LAsp-1; LIM domain, zin 28.4 23 0.00078 19.6 1.2 25 15-43 4-31 (31)
158 3gj5_B Nuclear pore complex pr 28.3 32 0.0011 19.9 1.9 26 52-79 4-29 (34)
159 3lrq_A E3 ubiquitin-protein li 28.1 10 0.00035 26.3 -0.5 40 62-105 24-65 (100)
160 1nj3_A NPL4; NZF domain, rubre 28.0 38 0.0013 18.6 2.1 25 53-79 4-28 (31)
161 2ckl_B Ubiquitin ligase protei 27.7 14 0.00049 27.7 0.3 40 62-105 56-97 (165)
162 3l11_A E3 ubiquitin-protein li 25.1 27 0.00094 24.4 1.4 40 62-105 17-57 (115)
163 2yqq_A Zinc finger HIT domain- 24.5 29 0.00098 22.4 1.3 26 58-83 10-35 (56)
164 2a20_A Regulating synaptic mem 24.3 18 0.00062 23.9 0.2 44 62-106 11-59 (62)
165 1faq_A RAF-1; transferase, ser 22.7 53 0.0018 19.7 2.3 28 62-89 16-45 (52)
166 1weq_A PHD finger protein 7; s 22.4 45 0.0015 23.3 2.0 31 71-105 46-77 (85)
167 2ysj_A Tripartite motif-contai 21.5 20 0.00068 22.2 0.0 39 62-104 22-63 (63)
168 1chc_A Equine herpes virus-1 r 21.2 37 0.0013 21.1 1.4 33 13-47 4-37 (68)
169 2d8t_A Dactylidin, ring finger 21.1 25 0.00085 22.4 0.4 34 11-47 12-46 (71)
170 2ecy_A TNF receptor-associated 20.5 23 0.00079 22.2 0.2 27 75-105 31-57 (66)
No 1
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.90 E-value=1.1e-24 Score=164.15 Aligned_cols=95 Identities=33% Similarity=0.859 Sum_probs=80.8
Q ss_pred CccccccccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecCcccccccCCceeeeccCCCCCC
Q 041905 3 RKKRLTKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHYCHVCGKASKFYCLCCPSAVC 82 (191)
Q Consensus 3 ~~~~~~~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~C~~C~~~~~~~C~~Cp~syh 82 (191)
|+.+...+..++++|++|++||+||+||.++||++||+.||++.. +|+|+|+||+|.|.+|++++.++|..||+|||
T Consensus 4 r~~~~~~~~~~~~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~L~~---~P~g~W~Cp~c~C~~C~k~~~~~C~~Cp~sfC 80 (107)
T 4gne_A 4 RKIKTEPKQMHEDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQ---PPYGKWECPWHQCDECSSAAVSFCEFCPHSFC 80 (107)
T ss_dssp ------CCCSSCSSCTTTCCCSEEEECCSTTCCCEECTGGGTCSS---CCSSCCCCGGGBCTTTCSBCCEECSSSSCEEC
T ss_pred ccccCCCcCCCCCCCCcCCCCCcEeEECCCCCCcccccccCcCCc---CCCCCEECCCCCCCcCCCCCCcCcCCCCcchh
Confidence 444555667899999999999999999977899999999999543 68999999999999999999999999999999
Q ss_pred CcccCccccccccCCcccC
Q 041905 83 KTCLYDAQFAVVKRNKGFC 101 (191)
Q Consensus 83 ~~Cl~~~~l~~i~~~~w~C 101 (191)
.+|+. ..|..-+.+.|+|
T Consensus 81 ~~c~~-g~l~~~~~~~~~c 98 (107)
T 4gne_A 81 KDHEK-GALVPSALEGRLC 98 (107)
T ss_dssp TTTCT-TSCEECTTTTCEE
T ss_pred hhccC-CcceecCCCCcee
Confidence 99999 4455557888997
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.87 E-value=2.6e-23 Score=156.32 Aligned_cols=91 Identities=26% Similarity=0.596 Sum_probs=83.3
Q ss_pred cccccccceecccCce---EeeCCCCCCCcccccccCccccccCCCCCeeecCc-ccccccCCc----eeeeccCCCCCC
Q 041905 11 EISENWCYVCKDGGKL---RLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWH-YCHVCGKAS----KFYCLCCPSAVC 82 (191)
Q Consensus 11 ~~~ed~C~vC~dgGeL---i~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h-~C~~C~~~~----~~~C~~Cp~syh 82 (191)
..++++|.||+++|+| |.|+ +|+++||+.||++.... .+.+.|+|+.+ +|.+|++.+ ++.|+.|+++||
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~-~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH 80 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTP-LKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYH 80 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCT-TTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEE
T ss_pred CCCCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCcccc-ccccCccCCcCCcccccCccCCCCCeeECCCCCcHHh
Confidence 4689999999999987 9999 99999999999998765 46799999997 699999876 899999999999
Q ss_pred CcccCccccccccCCcccCcCcH
Q 041905 83 KTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 83 ~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
..||. |++..+|.+.|+|+.|.
T Consensus 81 ~~Cl~-ppl~~~P~g~W~C~~C~ 102 (111)
T 2ysm_A 81 TFCLQ-PVMKSVPTNGWKCKNCR 102 (111)
T ss_dssp GGGSS-SCCSSCCSSCCCCHHHH
T ss_pred HHhcC-CccccCCCCCcCCcCCc
Confidence 99999 88999999999999885
No 3
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.84 E-value=4.7e-22 Score=150.72 Aligned_cols=94 Identities=26% Similarity=0.556 Sum_probs=80.6
Q ss_pred ccccceeccc----------CceEeeCCCCCCCcccccccCccccc--cCCCCCeeecCc-ccccccCC----ceeeecc
Q 041905 14 ENWCYVCKDG----------GKLRLCDHLRCPKVYHSECVDKDESF--LVAETKWTCNWH-YCHVCGKA----SKFYCLC 76 (191)
Q Consensus 14 ed~C~vC~dg----------GeLi~Cd~~~CpkayH~~Cl~~~~~~--~~~~g~W~Cp~h-~C~~C~~~----~~~~C~~ 76 (191)
.++|.+|.++ |+||.|+ +|+++||+.||++.... .++.+.|+|+.+ .|.+|++. .++.|+.
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~ 78 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLFCDD 78 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCCTTTTTEEECSS
T ss_pred CCcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccCccCcccccCCCCceEEcCC
Confidence 3689999765 4899999 99999999999987531 256889999987 79999984 3899999
Q ss_pred CCCCCCCcccCccccccccCCcccCcCcHHHHHH
Q 041905 77 CPSAVCKTCLYDAQFAVVKRNKGFCNSCLELAWL 110 (191)
Q Consensus 77 Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~~~~ 110 (191)
|+++||..||. |+|..+|.+.|+|+.|......
T Consensus 79 C~~~yH~~Cl~-ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 79 CDRGYHMYCLN-PPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SCCEEETTTSS-SCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCccccccccC-CCccCCCCCCeECccccchhhc
Confidence 99999999999 8899999999999999765443
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.80 E-value=5.4e-21 Score=144.36 Aligned_cols=90 Identities=19% Similarity=0.506 Sum_probs=77.8
Q ss_pred cccccceecc---------cCceEeeCCCCCCCcccccccCccc--cccCCCCCeeecCc-ccccccCC-----ceeeec
Q 041905 13 SENWCYVCKD---------GGKLRLCDHLRCPKVYHSECVDKDE--SFLVAETKWTCNWH-YCHVCGKA-----SKFYCL 75 (191)
Q Consensus 13 ~ed~C~vC~d---------gGeLi~Cd~~~CpkayH~~Cl~~~~--~~~~~~g~W~Cp~h-~C~~C~~~-----~~~~C~ 75 (191)
...+|.+|.. +|+||.|+ +|+++||+.||+... ...++.+.|+|+.+ +|.+|++. .++.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd 81 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCD 81 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECT
T ss_pred cCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCCccccccCcCCCccceEEcC
Confidence 4678999964 46899999 999999999998642 22256899999998 89999975 379999
Q ss_pred cCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 76 CCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 76 ~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|+++||..||. |+|.++|.+.|+|+.|.
T Consensus 82 ~C~~~yH~~Cl~-p~l~~~P~~~W~C~~C~ 110 (112)
T 3v43_A 82 SCDRGFHMECCD-PPLTRMPKGMWICQICR 110 (112)
T ss_dssp TTCCEECGGGCS-SCCSSCCSSCCCCTTTS
T ss_pred CCCCeeecccCC-CCCCCCCCCCeECCCCC
Confidence 999999999999 88999999999999995
No 5
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.45 E-value=4.1e-14 Score=96.00 Aligned_cols=51 Identities=33% Similarity=0.828 Sum_probs=45.3
Q ss_pred cccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecCcc
Q 041905 9 KEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHY 62 (191)
Q Consensus 9 ~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~ 62 (191)
.++.++++|.||+++|+||+|| +|+++||+.||+|++.. +|+++|+|+.+.
T Consensus 4 ~~d~~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~-~p~g~W~C~~C~ 54 (61)
T 1mm2_A 4 GSDHHMEFCRVCKDGGELLCCD--TCPSSYHIHCLNPPLPE-IPNGEWLCPRCT 54 (61)
T ss_dssp CSCSSCSSCTTTCCCSSCBCCS--SSCCCBCSSSSSSCCSS-CCSSCCCCTTTT
T ss_pred cccCCCCcCCCCCCCCCEEEcC--CCCHHHcccccCCCcCc-CCCCccCChhhc
Confidence 4577899999999999999999 99999999999998766 688999998543
No 6
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.42 E-value=7.9e-14 Score=101.32 Aligned_cols=50 Identities=26% Similarity=0.643 Sum_probs=45.2
Q ss_pred ccccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 8 TKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 8 ~~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
...+.++++|.||+++|+||+|| +|+++||+.||.|++.. +|+|+|+||.
T Consensus 19 ~~~d~n~~~C~vC~~~g~LL~CD--~C~~~fH~~Cl~PpL~~-~P~g~W~C~~ 68 (88)
T 1fp0_A 19 GTLDDSATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQD-VPGEEWSCSL 68 (88)
T ss_dssp CSSSSSSSCCSSSCSSSCCEECT--TSSCEECTTSSSTTCCC-CCSSSCCCCS
T ss_pred cccCCCCCcCcCcCCCCCEEECC--CCCCceecccCCCCCCC-CcCCCcCCcc
Confidence 44577899999999999999999 99999999999999876 6899999984
No 7
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.42 E-value=6.6e-14 Score=96.25 Aligned_cols=48 Identities=33% Similarity=0.871 Sum_probs=43.3
Q ss_pred ccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 10 EEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.+.++++|.||+++|+||+|| +|+++||+.||+|++.. +|.+.|+||.
T Consensus 4 ~~~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~ppl~~-~P~g~W~C~~ 51 (66)
T 1xwh_A 4 AQKNEDECAVCRDGGELICCD--GCPRAFHLACLSPPLRE-IPSGTWRCSS 51 (66)
T ss_dssp CCSCCCSBSSSSCCSSCEECS--SCCCEECTTTSSSCCSS-CCSSCCCCHH
T ss_pred CCCCCCCCccCCCCCCEEEcC--CCChhhcccccCCCcCc-CCCCCeECcc
Confidence 457899999999999999999 99999999999998775 6889999973
No 8
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=8e-14 Score=94.53 Aligned_cols=49 Identities=41% Similarity=1.001 Sum_probs=44.1
Q ss_pred cccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 9 KEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 9 ~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
-++.++++|.+|+++|+||+|| +|+++||+.||++++.. +|+++|+||.
T Consensus 6 ~~~~~~~~C~vC~~~g~ll~CD--~C~~~fH~~Cl~p~l~~-~p~g~W~C~~ 54 (61)
T 2l5u_A 6 YETDHQDYCEVCQQGGEIILCD--TCPRAYHMVCLDPDMEK-APEGKWSCPH 54 (61)
T ss_dssp CSSCCCSSCTTTSCCSSEEECS--SSSCEEEHHHHCTTCCS-CCCSSCCCTT
T ss_pred ccCCCCCCCccCCCCCcEEECC--CCChhhhhhccCCCCCC-CCCCceECcc
Confidence 4567899999999999999999 99999999999998765 6899999974
No 9
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=93.35 Aligned_cols=48 Identities=35% Similarity=0.941 Sum_probs=43.4
Q ss_pred cccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecCc
Q 041905 11 EISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWH 61 (191)
Q Consensus 11 ~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h 61 (191)
+.++++|.||+++|+||+|| +|+++||+.|++|++.. +|.+.|+||.+
T Consensus 2 d~~~~~C~vC~~~g~ll~Cd--~C~~~fH~~Cl~ppl~~-~p~g~W~C~~C 49 (60)
T 2puy_A 2 MIHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKT-IPKGMWICPRC 49 (60)
T ss_dssp CCCCSSCTTTCCCSSCEECS--SSSCEECGGGSSSCCSS-CCCSCCCCHHH
T ss_pred CCCCCCCcCCCCCCcEEEcC--CCCcCEECCcCCCCcCC-CCCCceEChhc
Confidence 56899999999999999999 99999999999998865 68899999753
No 10
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.5e-13 Score=91.55 Aligned_cols=48 Identities=33% Similarity=0.908 Sum_probs=43.6
Q ss_pred ccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 10 EEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.+.++++|.||+++|+||+|| .|+++||+.||+|++.. +|.+.|+||.
T Consensus 5 ~~~~~~~C~vC~~~g~ll~Cd--~C~~~~H~~Cl~ppl~~-~p~g~W~C~~ 52 (56)
T 2yql_A 5 SSGHEDFCSVCRKSGQLLMCD--TCSRVYHLDCLDPPLKT-IPKGMWICPR 52 (56)
T ss_dssp CCSSCCSCSSSCCSSCCEECS--SSSCEECSSSSSSCCCS-CCCSSCCCHH
T ss_pred cCCCCCCCccCCCCCeEEEcC--CCCcceECccCCCCcCC-CCCCceEChh
Confidence 467899999999999999999 99999999999998875 6889999974
No 11
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=3e-13 Score=93.28 Aligned_cols=48 Identities=23% Similarity=0.450 Sum_probs=42.8
Q ss_pred ccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 10 EEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
...+...|.||+++|+||+|| +|+++||+.||+|.+.. +|++.|+|+.
T Consensus 8 ~~~~~~~C~vC~~~~~ll~Cd--~C~~~~H~~Cl~P~l~~-~P~g~W~C~~ 55 (66)
T 2lri_C 8 NLAPGARCGVCGDGTDVLRCT--HCAAAFHWRCHFPAGTS-RPGTGLRCRS 55 (66)
T ss_dssp CCCTTCCCTTTSCCTTCEECS--SSCCEECHHHHCTTTCC-CCSSSCCCTT
T ss_pred CCCCCCCcCCCCCCCeEEECC--CCCCceecccCCCccCc-CCCCCEECcc
Confidence 345678899999999999999 99999999999999876 6899999974
No 12
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.27 E-value=1.3e-12 Score=105.53 Aligned_cols=46 Identities=37% Similarity=1.044 Sum_probs=42.4
Q ss_pred ccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 12 ISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 12 ~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.++++|.||++||+||+|| +|+++||..|++|++.. .|.|.|+||.
T Consensus 2 ~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~C~~p~l~~-~p~~~W~C~~ 47 (184)
T 3o36_A 2 PNEDWCAVCQNGGELLCCE--KCPKVFHLSCHVPTLTN-FPSGEWICTF 47 (184)
T ss_dssp CSCSSCTTTCCCSSCEECS--SSSCEECTTTSSSCCSS-CCSSCCCCTT
T ss_pred CCCCccccCCCCCeeeecC--CCCcccCccccCCCCCC-CCCCCEECcc
Confidence 5789999999999999999 99999999999999875 6899999973
No 13
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.26 E-value=1.7e-12 Score=106.85 Aligned_cols=48 Identities=35% Similarity=0.982 Sum_probs=43.7
Q ss_pred cccccccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 9 KEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 9 ~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
.++.++++|.+|++||+||+|| +|+++||..||+|++.. +|.|.|+||
T Consensus 2 ~~d~~~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~-~p~~~W~C~ 49 (207)
T 3u5n_A 2 DDDPNEDWCAVCQNGGDLLCCE--KCPKVFHLTCHVPTLLS-FPSGDWICT 49 (207)
T ss_dssp -CCSSCSSBTTTCCCEEEEECS--SSSCEECTTTSSSCCSS-CCSSCCCCT
T ss_pred CCCCCCCCCCCCCCCCceEEcC--CCCCccCCccCCCCCCC-CCCCCEEeC
Confidence 3567899999999999999999 99999999999999876 689999997
No 14
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.22 E-value=4.2e-12 Score=88.37 Aligned_cols=53 Identities=25% Similarity=0.610 Sum_probs=48.0
Q ss_pred CCCCeeecCcccccccCC----ceeeeccCCCCCCCcccCccccccccCC-cccCcCcH
Q 041905 52 AETKWTCNWHYCHVCGKA----SKFYCLCCPSAVCKTCLYDAQFAVVKRN-KGFCNSCL 105 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~----~~~~C~~Cp~syh~~Cl~~~~l~~i~~~-~w~C~~C~ 105 (191)
.+..|+|+...|.+|++. .++.|+.|+++||+.||. |+|.++|.+ .|+|+.|.
T Consensus 10 ~~~~w~C~~C~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~ 67 (70)
T 3asl_A 10 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECR 67 (70)
T ss_dssp TCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEEGGGSS-SCCSSCCSSSCCCCTTTS
T ss_pred CCCCeECCCCCCcCCCCcCCCCCEEEcCCCCCceecccCC-CCcCCCCCCCCcCCcCcc
Confidence 456799999999999964 389999999999999999 889999999 99999995
No 15
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=99.21 E-value=2.3e-12 Score=101.13 Aligned_cols=51 Identities=22% Similarity=0.634 Sum_probs=44.2
Q ss_pred ccccccccccceecccCceEeeCCCCCCCcccccccCcccc-----cc-CCCCCeeecC
Q 041905 8 TKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDES-----FL-VAETKWTCNW 60 (191)
Q Consensus 8 ~~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~-----~~-~~~g~W~Cp~ 60 (191)
+.++.++++|.+|++||+|++|| +||++||..||.+++. .+ .+.+.|+|+.
T Consensus 57 ~d~Dg~~d~C~vC~~GG~LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~ 113 (142)
T 2lbm_A 57 RDSDGMDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYI 113 (142)
T ss_dssp BCTTSCBCSCSSSCCCSSEEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTT
T ss_pred ecCCCCCCeecccCCCCcEEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeec
Confidence 35688999999999999999999 9999999999998874 11 4789999974
No 16
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.20 E-value=5.7e-12 Score=89.34 Aligned_cols=53 Identities=25% Similarity=0.607 Sum_probs=48.7
Q ss_pred CCCCeeecCcccccccCCc----eeeeccCCCCCCCcccCccccccccCCc-ccCcCcH
Q 041905 52 AETKWTCNWHYCHVCGKAS----KFYCLCCPSAVCKTCLYDAQFAVVKRNK-GFCNSCL 105 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~~----~~~C~~Cp~syh~~Cl~~~~l~~i~~~~-w~C~~C~ 105 (191)
.++.|+|+...|.+|++.. ++.|+.|+++||+.||. |+|..+|.+. |+|+.|.
T Consensus 18 ~~~~W~C~~C~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~-PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 18 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp TCTTSCCTTTSBTTTCCCSCGGGEEECTTTCCEEETTTSS-SCCSSCCSSSCCCCTTTC
T ss_pred CCCCCCCCCCcCCccCCCCCCcceeEeCCCCCccCcccCC-CcccCCCCCCceECcCcc
Confidence 3578999999999999874 79999999999999999 8899999998 9999995
No 17
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=4.5e-12 Score=92.54 Aligned_cols=60 Identities=25% Similarity=0.536 Sum_probs=48.7
Q ss_pred cccccccccccceecccCc---eEeeCCCCCCCcccccccCccccccCCCCCeeecCcccccccCC
Q 041905 7 LTKEEISENWCYVCKDGGK---LRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHYCHVCGKA 69 (191)
Q Consensus 7 ~~~~~~~ed~C~vC~dgGe---Li~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~C~~C~~~ 69 (191)
-..+..++++|.||+++++ ||+|| .|+++||+.||+|++.. +|.++|+||.+.-..+++.
T Consensus 9 s~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~-~P~g~W~C~~C~~~~~~~~ 71 (92)
T 2e6r_A 9 SSAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPE-IPRGIWRCPKCILAECKQP 71 (92)
T ss_dssp CCCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSS-CCSSCCCCHHHHHHHHSCC
T ss_pred chhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCccc-CCCCCcCCccCcCccccCC
Confidence 3445667889999999874 99999 99999999999998875 6899999987655555543
No 18
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=87.05 Aligned_cols=52 Identities=27% Similarity=0.581 Sum_probs=47.2
Q ss_pred CCCeeecCcccccccCC----ceeeeccCCCCCCCcccCccccccccCC-cccCcCcH
Q 041905 53 ETKWTCNWHYCHVCGKA----SKFYCLCCPSAVCKTCLYDAQFAVVKRN-KGFCNSCL 105 (191)
Q Consensus 53 ~g~W~Cp~h~C~~C~~~----~~~~C~~Cp~syh~~Cl~~~~l~~i~~~-~w~C~~C~ 105 (191)
...|.|+...|.+|++. .++.|+.|+++||+.||. |+|..+|.+ .|+|+.|.
T Consensus 19 ~~~w~C~~c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 19 DPEKKCHSCSCRVCGGKHEPNMQLLCDECNVAYHIYCLN-PPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp CSSSCCSSSSCSSSCCCCCSTTEEECSSSCCEEETTSSS-SCCSSCCCSSCCCCTTTC
T ss_pred CCCeECCCCCCcCcCCcCCCCCEEEcCCCCccccccccC-CCccCCCCCCCcCCcCcc
Confidence 45799999999999964 389999999999999999 889999999 99999995
No 19
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.15 E-value=1e-11 Score=84.77 Aligned_cols=49 Identities=24% Similarity=0.682 Sum_probs=42.2
Q ss_pred ccccccccceeccc-----CceEeeCCCCCCCcccccccCccccc--cCCCCCeeecC
Q 041905 10 EEISENWCYVCKDG-----GKLRLCDHLRCPKVYHSECVDKDESF--LVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~dg-----GeLi~Cd~~~CpkayH~~Cl~~~~~~--~~~~g~W~Cp~ 60 (191)
++.++++|.||+.+ ++||+|| +|+++||+.|++|++.. +.|++.|+|+.
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~ 57 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNEMVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQ 57 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBCEEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--CCChHHHhhhCCCcccccccCCCCCEECCC
Confidence 35678999999987 8999999 99999999999998753 23889999974
No 20
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.14 E-value=1e-11 Score=80.83 Aligned_cols=43 Identities=37% Similarity=0.827 Sum_probs=37.4
Q ss_pred cccceecccC---ceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 15 NWCYVCKDGG---KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 15 d~C~vC~dgG---eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.+|.||+++| +||+|| +|+++||+.|++|++.. +|+++|+|+.
T Consensus 1 a~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~-~P~g~W~C~~ 46 (51)
T 1f62_A 1 ARCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYE-VPDGEWQCPA 46 (51)
T ss_dssp CCCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCS-CCSSCCSCTT
T ss_pred CCCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCC-CCCCcEECcC
Confidence 3699999765 699999 99999999999998765 6889999974
No 21
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.13 E-value=1.4e-11 Score=100.37 Aligned_cols=47 Identities=28% Similarity=0.694 Sum_probs=42.1
Q ss_pred cccccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecCcc
Q 041905 13 SENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHY 62 (191)
Q Consensus 13 ~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~ 62 (191)
++++|.+|++||+||+|| +|+++||+.|+.|++.. +|.|.|+|+.+.
T Consensus 1 s~~~C~~C~~~g~ll~Cd--~C~~~~H~~Cl~p~l~~-~p~g~W~C~~C~ 47 (189)
T 2ro1_A 1 SATICRVCQKPGDLVMCN--QCEFCFHLDCHLPALQD-VPGEEWSCSLCH 47 (189)
T ss_dssp CCCCBTTTCCCSSCCCCT--TTCCBCCSTTSTTCCSS-CCCTTCCTTTTS
T ss_pred CCCcCccCCCCCceeECC--CCCchhccccCCCCccc-CCCCCCCCcCcc
Confidence 478999999999999999 99999999999998865 689999997543
No 22
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-11 Score=85.92 Aligned_cols=46 Identities=28% Similarity=0.677 Sum_probs=40.9
Q ss_pred ccccccccceecccC-----ceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 10 EEISENWCYVCKDGG-----KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~dgG-----eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
+..++++|.||++++ +||+|| +|+++||+.|++++. +|+|+|+|+.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~~---vP~g~W~C~~ 62 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY---IPEGQWLCRH 62 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCSS---CCSSCCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCCc---CCCCCcCCcc
Confidence 456789999999876 899999 999999999999985 6899999974
No 23
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.11 E-value=1.9e-11 Score=88.53 Aligned_cols=45 Identities=29% Similarity=0.723 Sum_probs=40.3
Q ss_pred ccccccceecccC-----ceEeeCCCCCCCcccccccCccccccCCCCCeeecCc
Q 041905 12 ISENWCYVCKDGG-----KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWH 61 (191)
Q Consensus 12 ~~ed~C~vC~dgG-----eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h 61 (191)
.++++|.||+++| +||+|| +|+++||+.|++++. +|+|.|+|+.+
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~~---vP~g~W~C~~C 72 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVPY---IPEGQWLCRHC 72 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCSS---CCSSCCCCHHH
T ss_pred CCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCCc---cCCCceECccc
Confidence 4678999999988 999999 999999999999985 68999999743
No 24
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=99.10 E-value=1.1e-11 Score=95.88 Aligned_cols=52 Identities=23% Similarity=0.625 Sum_probs=43.9
Q ss_pred ccccccccccceecccCceEeeCCCCCCCcccccccCccc-----ccc-CCCCCeeecCc
Q 041905 8 TKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDE-----SFL-VAETKWTCNWH 61 (191)
Q Consensus 8 ~~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~-----~~~-~~~g~W~Cp~h 61 (191)
+.++.++++|.+|++||+|++|| .||++||..||.+.. ..+ .+.+.|+|+.+
T Consensus 51 ~d~Dg~~~~C~vC~dGG~LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C 108 (129)
T 3ql9_A 51 RDSDGMDEQCRWCAEGGNLICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYIC 108 (129)
T ss_dssp BCTTSCBSSCTTTCCCSEEEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTT
T ss_pred cCCCCCCCcCeecCCCCeeEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCc
Confidence 46688999999999999999999 999999999999873 222 27899999643
No 25
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=4.6e-11 Score=84.59 Aligned_cols=45 Identities=31% Similarity=0.644 Sum_probs=39.7
Q ss_pred cccccceec---ccCceEeeCCCCCCCcccccccCccccccCCCC-CeeecC
Q 041905 13 SENWCYVCK---DGGKLRLCDHLRCPKVYHSECVDKDESFLVAET-KWTCNW 60 (191)
Q Consensus 13 ~ed~C~vC~---dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g-~W~Cp~ 60 (191)
++..|.||+ ++|+||+|| .|+++||+.||+|++.. +|+| +|+||.
T Consensus 25 ~~c~C~vC~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~ 73 (77)
T 2e6s_A 25 HSCSCRVCGGKHEPNMQLLCD--ECNVAYHIYCLNPPLDK-VPEEEYWYCPS 73 (77)
T ss_dssp SSSSCSSSCCCCCSTTEEECS--SSCCEEETTSSSSCCSS-CCCSSCCCCTT
T ss_pred CCCCCcCcCCcCCCCCEEEcC--CCCccccccccCCCccC-CCCCCCcCCcC
Confidence 456899999 589999999 99999999999998876 6788 999974
No 26
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.05 E-value=6.4e-11 Score=82.34 Aligned_cols=42 Identities=33% Similarity=0.737 Sum_probs=37.1
Q ss_pred ccceec---ccCceEeeCCCCCCCcccccccCccccccCCCC-CeeecC
Q 041905 16 WCYVCK---DGGKLRLCDHLRCPKVYHSECVDKDESFLVAET-KWTCNW 60 (191)
Q Consensus 16 ~C~vC~---dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g-~W~Cp~ 60 (191)
.|.||+ ++|+||+|| +|+++||+.||+|++.. +|+| +|+||.
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~-~P~g~~W~C~~ 65 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSS-VPSEDEWYCPE 65 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSS-CCSSSCCCCTT
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCC-CCCCCCcCCcC
Confidence 577888 578999999 99999999999998876 6788 999975
No 27
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.05 E-value=6.1e-11 Score=79.74 Aligned_cols=49 Identities=20% Similarity=0.548 Sum_probs=42.5
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcHHHHHHH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLELAWLI 111 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~~~~i 111 (191)
.|.+|++++ ++.|+.|+++||..|+. |++..+|.+.|+|+.|.....+-
T Consensus 7 ~C~vC~~~g~ll~Cd~C~~~fH~~Cl~-ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 7 FCSVCRKSGQLLMCDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp SCTTTCCCSSCEECSSSSCEECGGGSS-SCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCcCCCCCCcEEEcCCCCcCEECCcCC-CCcCCCCCCceEChhccChhhch
Confidence 578998876 89999999999999999 88999999999999997554433
No 28
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.02 E-value=5.5e-11 Score=86.06 Aligned_cols=47 Identities=23% Similarity=0.544 Sum_probs=40.3
Q ss_pred ccccccceeccc-----CceEeeCCCCCCCcccccccCccccc---cCCCCCeeecC
Q 041905 12 ISENWCYVCKDG-----GKLRLCDHLRCPKVYHSECVDKDESF---LVAETKWTCNW 60 (191)
Q Consensus 12 ~~ed~C~vC~dg-----GeLi~Cd~~~CpkayH~~Cl~~~~~~---~~~~g~W~Cp~ 60 (191)
.++++|.||+.+ ++||+|| .|+++||+.|++|++.. .+|++.|+|+.
T Consensus 14 e~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~ 68 (88)
T 1wev_A 14 EMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCAR 68 (88)
T ss_dssp HHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHH
T ss_pred CCCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCcc
Confidence 356799999987 7899999 99999999999999752 15899999974
No 29
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.01 E-value=1.5e-10 Score=78.31 Aligned_cols=43 Identities=26% Similarity=0.729 Sum_probs=39.3
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|++.+ ++.|+.|+++||..||. |++.++|.+.|+|+.|.
T Consensus 11 ~C~vC~~~g~ll~Cd~C~~~fH~~Cl~-ppl~~~p~g~W~C~~C~ 54 (61)
T 1mm2_A 11 FCRVCKDGGELLCCDTCPSSYHIHCLN-PPLPEIPNGEWLCPRCT 54 (61)
T ss_dssp SCTTTCCCSSCBCCSSSCCCBCSSSSS-SCCSSCCSSCCCCTTTT
T ss_pred cCCCCCCCCCEEEcCCCCHHHcccccC-CCcCcCCCCccCChhhc
Confidence 578898766 89999999999999999 88999999999999996
No 30
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.00 E-value=8.3e-11 Score=80.96 Aligned_cols=44 Identities=25% Similarity=0.532 Sum_probs=40.3
Q ss_pred cccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 61 HYCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 61 h~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
..|.+|++.+ ++.|+.|+++||+.||+ |+|..+|.+.|+|+.|.
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~H~~Cl~-P~l~~~P~g~W~C~~C~ 57 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAFHWRCHF-PAGTSRPGTGLRCRSCS 57 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEECHHHHC-TTTCCCCSSSCCCTTTT
T ss_pred CCcCCCCCCCeEEECCCCCCceecccCC-CccCcCCCCCEECcccc
Confidence 3589998876 89999999999999999 88999999999999995
No 31
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.97 E-value=2.1e-10 Score=83.22 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=43.3
Q ss_pred CCeeecC-cccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 54 TKWTCNW-HYCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 54 g~W~Cp~-h~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
..|.-.. ..|.+|++++ +++|+.|+++||..||. |++.++|.+.|+|+.|.
T Consensus 18 ~~~~d~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~-PpL~~~P~g~W~C~~C~ 70 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCH 70 (88)
T ss_dssp CCSSSSSSSCCSSSCSSSCCEECTTSSCEECTTSSS-TTCCCCCSSSCCCCSCC
T ss_pred ccccCCCCCcCcCcCCCCCEEECCCCCCceecccCC-CCCCCCcCCCcCCcccc
Confidence 3344332 3679999876 89999999999999999 88999999999999996
No 32
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=1.6e-10 Score=76.77 Aligned_cols=43 Identities=23% Similarity=0.658 Sum_probs=39.1
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|++.+ ++.|+.|+++||..||. |++..+|.+.|+|+.|.
T Consensus 11 ~C~vC~~~g~ll~Cd~C~~~~H~~Cl~-ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 11 FCSVCRKSGQLLMCDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SCSSSCCSSCCEECSSSSCEECSSSSS-SCCCSCCCSSCCCHHHH
T ss_pred CCccCCCCCeEEEcCCCCcceECccCC-CCcCCCCCCceEChhhh
Confidence 468898776 79999999999999999 88999999999999995
No 33
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.96 E-value=1.8e-10 Score=78.99 Aligned_cols=43 Identities=30% Similarity=0.657 Sum_probs=39.0
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|++++ ++.|+.|+++||..||. |++..+|.+.|+|+.|.
T Consensus 10 ~C~vC~~~g~ll~CD~C~~~fH~~Cl~-ppl~~~P~g~W~C~~C~ 53 (66)
T 1xwh_A 10 ECAVCRDGGELICCDGCPRAFHLACLS-PPLREIPSGTWRCSSCL 53 (66)
T ss_dssp SBSSSSCCSSCEECSSCCCEECTTTSS-SCCSSCCSSCCCCHHHH
T ss_pred CCccCCCCCCEEEcCCCChhhcccccC-CCcCcCCCCCeECcccc
Confidence 458888766 89999999999999999 88999999999999995
No 34
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.94 E-value=1.9e-10 Score=74.65 Aligned_cols=43 Identities=28% Similarity=0.537 Sum_probs=39.1
Q ss_pred ccccccCCc----eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS----KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~----~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|++.+ ++.|+.|+++||..|++ |++.++|.+.|+|+.|.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~-p~l~~~P~g~W~C~~C~ 48 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLR-PALYEVPDGEWQCPACQ 48 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHC-TTCCSCCSSCCSCTTTS
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCC-CCcCCCCCCcEECcCcc
Confidence 588998765 79999999999999999 88999999999999995
No 35
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=3.4e-10 Score=82.50 Aligned_cols=54 Identities=19% Similarity=0.447 Sum_probs=47.7
Q ss_pred CCCCeeecCc-ccccccCCc----eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 52 AETKWTCNWH-YCHVCGKAS----KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 52 ~~g~W~Cp~h-~C~~C~~~~----~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
....|.|... .|.+|++.+ ++.|+.|+++||..||. |+|..||.+.|+|+.|..
T Consensus 7 ~~s~~~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~-Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 7 GHSSAQFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL-PPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS-SCCSSCCSSCCCCHHHHH
T ss_pred CCchhhccCCCCCccCCCcCCCCCEEEcCCCCchhccccCC-CCcccCCCCCcCCccCcC
Confidence 4567888864 799999875 89999999999999999 889999999999999964
No 36
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.92 E-value=3.5e-10 Score=94.76 Aligned_cols=53 Identities=25% Similarity=0.610 Sum_probs=46.3
Q ss_pred CCCCeeecCcccccccCC----ceeeeccCCCCCCCcccCccccccccCC-cccCcCcH
Q 041905 52 AETKWTCNWHYCHVCGKA----SKFYCLCCPSAVCKTCLYDAQFAVVKRN-KGFCNSCL 105 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~----~~~~C~~Cp~syh~~Cl~~~~l~~i~~~-~w~C~~C~ 105 (191)
.++.|.|+...|.+|+.. .++.|+.|+++||..||. |||..+|.+ .|+|+.|.
T Consensus 166 ~~~~w~C~~c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~-PPL~~vP~G~~W~Cp~C~ 223 (226)
T 3ask_A 166 DDVNRLCRVCACHLCGGRQDPDKQLMCDECDMAFHIYCLD-PPLSSVPSEDEWYCPECR 223 (226)
T ss_dssp TCTTSCCTTTSCSSSCCCCC--CCEECSSSCCEECSCC---CCCCSCCSSSCCCCGGGC
T ss_pred CCcCEecCCCCCcCCCCCCCCCCeEEcCCCCcceeCccCC-CCcccCCCCCCCCCcCCc
Confidence 456899999999999974 389999999999999999 889999999 99999995
No 37
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=2.5e-10 Score=77.21 Aligned_cols=44 Identities=30% Similarity=0.683 Sum_probs=39.4
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
.|.+|++.+ ++.|+.|+++||..||. +++.++|.+.|+|+.|..
T Consensus 13 ~C~vC~~~g~ll~CD~C~~~fH~~Cl~-p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 13 YCEVCQQGGEIILCDTCPRAYHMVCLD-PDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCTTTSCCSSEEECSSSSCEEEHHHHC-TTCCSCCCSSCCCTTGGG
T ss_pred CCccCCCCCcEEECCCCChhhhhhccC-CCCCCCCCCceECccccc
Confidence 568888766 89999999999999999 788899999999999963
No 38
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.86 E-value=7.7e-10 Score=82.51 Aligned_cols=49 Identities=33% Similarity=0.859 Sum_probs=41.9
Q ss_pred ccceecccCc---eEeeCCCCCCCcccccccCccccccCCCCCeeecCcccccccCC
Q 041905 16 WCYVCKDGGK---LRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHYCHVCGKA 69 (191)
Q Consensus 16 ~C~vC~dgGe---Li~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~C~~C~~~ 69 (191)
+|.+|+.+|+ ||.|| .|+++||+.||+|++.. +|++.|+|| .|..|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~-~P~g~W~C~--~C~~c~~g 107 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKS-VPTNGWKCK--NCRICISG 107 (111)
T ss_dssp CCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSS-CCSSCCCCH--HHHCCSCS
T ss_pred cccccCccCCCCCeeECC--CCCcHHhHHhcCCcccc-CCCCCcCCc--CCcCcCCC
Confidence 6899998876 99999 99999999999998876 688999998 66666543
No 39
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=76.67 Aligned_cols=42 Identities=31% Similarity=0.700 Sum_probs=35.6
Q ss_pred ccceeccc---CceEeeCCCCCCCcccccccCccccccCCCCC-eeecC
Q 041905 16 WCYVCKDG---GKLRLCDHLRCPKVYHSECVDKDESFLVAETK-WTCNW 60 (191)
Q Consensus 16 ~C~vC~dg---GeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~-W~Cp~ 60 (191)
.|.+|+.+ ++||+|| .|+++||+.||+|++.. +|.+. |+||.
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~-~P~g~~W~C~~ 73 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSS-VPSEDEWYCPE 73 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSS-CCSSSCCCCTT
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccC-CCCCCceECcC
Confidence 46677664 6799999 99999999999999876 67888 99974
No 40
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.81 E-value=1.7e-09 Score=81.08 Aligned_cols=42 Identities=29% Similarity=0.801 Sum_probs=37.3
Q ss_pred ccceeccc----CceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 16 WCYVCKDG----GKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 16 ~C~vC~dg----GeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
+|.+|+++ ++||+|| .|+++||+.||+|++.. +|++.|+|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~~-~P~~~W~C~~ 108 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLTR-MPKGMWICQI 108 (112)
T ss_dssp CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCSS-CCSSCCCCTT
T ss_pred ccccccCcCCCccceEEcC--CCCCeeecccCCCCCCC-CCCCCeECCC
Confidence 68999875 4899999 99999999999999876 7899999974
No 41
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.79 E-value=1.8e-09 Score=81.32 Aligned_cols=41 Identities=29% Similarity=0.813 Sum_probs=37.1
Q ss_pred ccceecc---cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 16 WCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 16 ~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
.|.||++ +|+||+|| .|+++||+.||+|++.. +|+|+|+||
T Consensus 60 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~-~P~g~W~C~ 103 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVAE-PPEGSWSCH 103 (114)
T ss_dssp CCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCSS-CCSSCCCCH
T ss_pred ccCcccccCCCCceEEcC--CCCccccccccCCCccC-CCCCCeECc
Confidence 6889987 58999999 99999999999998876 689999997
No 42
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.77 E-value=1e-09 Score=79.28 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=40.4
Q ss_pred cccccccCC------ceeeeccCCCCCCCcccCcccccc----ccCCcccCcCcHHHH
Q 041905 61 HYCHVCGKA------SKFYCLCCPSAVCKTCLYDAQFAV----VKRNKGFCNSCLELA 108 (191)
Q Consensus 61 h~C~~C~~~------~~~~C~~Cp~syh~~Cl~~~~l~~----i~~~~w~C~~C~~~~ 108 (191)
.+|.+|++. .+++|+.|+++||+.|+. |+|.. +|.+.|+|+.|....
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~-Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHK-PQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS-SCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCC-CcccccccCCCCCCeeCccccchh
Confidence 478999876 389999999999999999 77774 899999999997543
No 43
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.73 E-value=3.4e-09 Score=88.76 Aligned_cols=45 Identities=29% Similarity=0.618 Sum_probs=35.9
Q ss_pred ccccceecc---cCceEeeCCCCCCCcccccccCccccccCCCC-CeeecCc
Q 041905 14 ENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDESFLVAET-KWTCNWH 61 (191)
Q Consensus 14 ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g-~W~Cp~h 61 (191)
+..|.+|++ +|+||+|| +|+++||+.||+|++.. +|.| +|+||.+
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~-vP~G~~W~Cp~C 222 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSS-VPSEDEWYCPEC 222 (226)
T ss_dssp TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCS-CCSSSCCCCGGG
T ss_pred CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCccc-CCCCCCCCCcCC
Confidence 457999996 68999999 99999999999999876 6788 9999753
No 44
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.68 E-value=3.9e-09 Score=71.78 Aligned_cols=44 Identities=18% Similarity=0.561 Sum_probs=37.7
Q ss_pred cccccccCC------ceeeeccCCCCCCCcccCcccccc--c-cCCcccCcCcH
Q 041905 61 HYCHVCGKA------SKFYCLCCPSAVCKTCLYDAQFAV--V-KRNKGFCNSCL 105 (191)
Q Consensus 61 h~C~~C~~~------~~~~C~~Cp~syh~~Cl~~~~l~~--i-~~~~w~C~~C~ 105 (191)
..|.+|+.+ .++.|+.|+++||+.|+. |++.+ | |.+.|+|+.|.
T Consensus 7 ~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~-p~l~~~~~~p~~~W~C~~C~ 59 (66)
T 2yt5_A 7 GVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT-PHIDSSVIDSDEKWLCRQCV 59 (66)
T ss_dssp CCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS-SCCCHHHHHSSCCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC-CcccccccCCCCCEECCCCc
Confidence 367899875 289999999999999999 77765 4 88999999996
No 45
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.68 E-value=6.4e-09 Score=83.77 Aligned_cols=44 Identities=20% Similarity=0.618 Sum_probs=40.3
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
.|.+|++++ +++|+.|+++||..|+. |++..+|.+.|+|+.|..
T Consensus 6 ~C~~C~~~g~ll~Cd~C~~~~H~~C~~-p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 6 WCAVCQNGGELLCCEKCPKVFHLSCHV-PTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp SCTTTCCCSSCEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTSC
T ss_pred ccccCCCCCeeeecCCCCcccCccccC-CCCCCCCCCCEECccccC
Confidence 578999877 89999999999999999 889999999999999973
No 46
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.66 E-value=7.6e-09 Score=84.89 Aligned_cols=43 Identities=23% Similarity=0.609 Sum_probs=39.9
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|++++ +++|+.|+++||..|+. |++..+|.+.|+|+.|.
T Consensus 9 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~-p~l~~~p~~~W~C~~C~ 52 (207)
T 3u5n_A 9 WCAVCQNGGDLLCCEKCPKVFHLTCHV-PTLLSFPSGDWICTFCR 52 (207)
T ss_dssp SBTTTCCCEEEEECSSSSCEECTTTSS-SCCSSCCSSCCCCTTTS
T ss_pred CCCCCCCCCceEEcCCCCCccCCccCC-CCCCCCCCCCEEeCcee
Confidence 578999877 89999999999999999 88999999999999997
No 47
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.65 E-value=1.1e-08 Score=83.31 Aligned_cols=44 Identities=23% Similarity=0.484 Sum_probs=40.8
Q ss_pred cccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 61 HYCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 61 h~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
..|.+|++++ +++|+.|+++||..|+. |++..+|.+.|+|+.|.
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~-p~l~~~p~g~W~C~~C~ 47 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHL-PALQDVPGEEWSCSLCH 47 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTST-TCCSSCCCTTCCTTTTS
T ss_pred CcCccCCCCCceeECCCCCchhccccCC-CCcccCCCCCCCCcCcc
Confidence 4689999877 89999999999999999 88999999999999997
No 48
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.64 E-value=8.7e-09 Score=71.79 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=39.8
Q ss_pred ccccccccceeccc---CceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 10 EEISENWCYVCKDG---GKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~dg---GeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
+..+..+|.+|+.+ +.+|.|| .|++.||..||++.... .+.+.|+||.
T Consensus 14 ~~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~-~~~~~w~C~~ 64 (75)
T 2k16_A 14 WGNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAP-PEEMQWFCPK 64 (75)
T ss_dssp SSCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCC-CSSSCCCCTT
T ss_pred cCCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccC-CCCCCEEChh
Confidence 34566789999975 4699999 99999999999998865 4568999974
No 49
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.63 E-value=8.8e-09 Score=69.20 Aligned_cols=46 Identities=30% Similarity=0.789 Sum_probs=36.2
Q ss_pred cccccccceecc--cCceEeeCCCCCC-CcccccccCccccccCCCCCeeecC
Q 041905 11 EISENWCYVCKD--GGKLRLCDHLRCP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~d--gGeLi~Cd~~~Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
..+..+| +|++ +|+||.||...|+ ..||..|+++.. .|.++|+||.
T Consensus 6 ~~e~~yC-~C~~~~~g~mi~CD~~~C~~~wfH~~Cvgl~~---~p~~~w~Cp~ 54 (59)
T 3c6w_A 6 SNEPTYC-LCHQVSYGEMIGCDNPDCPIEWFHFACVDLTT---KPKGKWFCPR 54 (59)
T ss_dssp --CCEET-TTTEECCSEEEECSCTTCSSCEEETGGGTCSS---CCSSCCCCHH
T ss_pred CCCCcEE-ECCCCCCCCeeEeeCCCCCCCCEecccCCccc---CCCCCEECcC
Confidence 4567788 8998 7999999922299 699999999875 5679999973
No 50
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.63 E-value=9.5e-09 Score=69.19 Aligned_cols=44 Identities=27% Similarity=0.737 Sum_probs=35.8
Q ss_pred cccccccceecc--cCceEeeCCCC--CC-CcccccccCccccccCCCCCeeecC
Q 041905 11 EISENWCYVCKD--GGKLRLCDHLR--CP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~d--gGeLi~Cd~~~--Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
..+..+| +|++ +|+||.|| + |+ ..||+.|+++.. .|.+.|+||.
T Consensus 7 ~~e~~~C-~C~~~~~g~mi~CD--~cdC~~~wfH~~Cvgl~~---~p~g~w~C~~ 55 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSYGEMIGCD--NPDCSIEWFHFACVGLTT---KPRGKWFCPR 55 (60)
T ss_dssp --CCEET-TTTEECCSEEEECS--CTTCSSCEEETGGGTCSS---CCSSCCCCHH
T ss_pred CCCCCEE-ECCCcCCCCEEEeC--CCCCCCceEehhcCCCCc---CCCCCEECcC
Confidence 3456788 7998 78999999 7 88 799999999765 5679999973
No 51
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.62 E-value=1.6e-08 Score=70.33 Aligned_cols=44 Identities=27% Similarity=0.737 Sum_probs=36.8
Q ss_pred cccccccceecc--cCceEeeCCCC--CC-CcccccccCccccccCCCCCeeecC
Q 041905 11 EISENWCYVCKD--GGKLRLCDHLR--CP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~d--gGeLi~Cd~~~--Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
..+..+| +|++ .|+||.|| + |+ ..||+.||++.. .|.+.|+||.
T Consensus 13 ~~~~~~C-~C~~~~~g~MI~CD--~~~C~~~wfH~~Cvgl~~---~p~g~w~Cp~ 61 (71)
T 1wen_A 13 PNEPTYC-LCHQVSYGEMIGCD--NPDCSIEWFHFACVGLTT---KPRGKWFCPR 61 (71)
T ss_dssp TTSCCCS-TTCCCSCSSEECCS--CSSCSCCCEETTTTTCSS---CCSSCCCCTT
T ss_pred CCCCCEE-ECCCCCCCCEeEee--CCCCCCccEecccCCcCc---CCCCCEECCC
Confidence 3456789 7998 78999999 7 99 699999999865 5679999984
No 52
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.57 E-value=1.6e-08 Score=68.57 Aligned_cols=44 Identities=30% Similarity=0.772 Sum_probs=36.3
Q ss_pred cccccccceecc--cCceEeeCCCC--CC-CcccccccCccccccCCCCCeeecC
Q 041905 11 EISENWCYVCKD--GGKLRLCDHLR--CP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~d--gGeLi~Cd~~~--Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.++..+| +|++ +|+||.|| + |+ ..||..||++.. .|.+.|+||.
T Consensus 8 ~~e~~yC-~C~~~~~g~MI~CD--~c~C~~~WfH~~Cvgl~~---~p~~~w~Cp~ 56 (62)
T 2g6q_A 8 PNEPTYC-LCNQVSYGEMIGCD--NEQCPIEWFHFSCVSLTY---KPKGKWYCPK 56 (62)
T ss_dssp --CCEET-TTTEECCSEEEECS--CTTCSSCEEETGGGTCSS---CCSSCCCCHH
T ss_pred CCCCcEE-ECCCCCCCCeeeee--CCCCCcccEecccCCcCc---CCCCCEECcC
Confidence 3456788 8998 79999999 7 88 999999999875 4679999973
No 53
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.49 E-value=1.7e-08 Score=70.24 Aligned_cols=42 Identities=24% Similarity=0.676 Sum_probs=36.3
Q ss_pred ccccccCC------ceeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 62 YCHVCGKA------SKFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~------~~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
.|.+|+++ .++.|+.|+++||..|+. ++ .||.+.|+|+.|..
T Consensus 18 ~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~-~~--~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYG-VP--YIPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT-CS--SCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCEEECCCCCCccccccCC-CC--cCCCCCcCCccCcC
Confidence 57999876 389999999999999999 43 48999999999964
No 54
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.49 E-value=5.2e-08 Score=70.97 Aligned_cols=46 Identities=26% Similarity=0.693 Sum_probs=36.8
Q ss_pred cccccccceecc--cCceEeeCCCCCC-CcccccccCccccccCCCCCeeecC
Q 041905 11 EISENWCYVCKD--GGKLRLCDHLRCP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~d--gGeLi~Cd~~~Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.....+| +|++ .|+||.||.-.|+ ..||..||++.. .|.+.|+||.
T Consensus 33 ~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~---~p~g~W~Cp~ 81 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTT---KPRGKWFCPR 81 (91)
T ss_dssp SCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSS---CCCSSCCCTT
T ss_pred CCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCc---CCCCCEECcC
Confidence 3456789 9998 7999999922299 689999999875 4679999983
No 55
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.48 E-value=2.6e-08 Score=71.91 Aligned_cols=42 Identities=24% Similarity=0.676 Sum_probs=36.1
Q ss_pred ccccccCC------ceeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 62 YCHVCGKA------SKFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~------~~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
.|.+|+.+ .++.|+.|+.+||..|+. ++ .+|.+.|||+.|..
T Consensus 27 ~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~-p~--~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 27 VCSICMDGESQNSNVILFCDMCNLAVHQECYG-VP--YIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT-CS--SCCSSCCCCHHHHH
T ss_pred cCCcCCCCCCCCCCCEEECCCCCchhhcccCC-CC--ccCCCceECccccC
Confidence 56899876 379999999999999999 44 37999999999963
No 56
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.38 E-value=1.3e-07 Score=68.71 Aligned_cols=47 Identities=30% Similarity=0.821 Sum_probs=36.0
Q ss_pred ccccccccceecc--cCceEeeCCCCCC-CcccccccCccccccCCCCCeeecC
Q 041905 10 EEISENWCYVCKD--GGKLRLCDHLRCP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 10 ~~~~ed~C~vC~d--gGeLi~Cd~~~Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
+++...+| +|++ .|+||.||.-.|+ ..||+.||++.. .|.+.|+||.
T Consensus 22 ~~~~~~yC-iC~~~~~g~MI~CD~c~C~~eWfH~~CVgl~~---~p~~~W~Cp~ 71 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGPMVACDNPACPFEWFHYGCVGLKQ---APKGKWYCSK 71 (90)
T ss_dssp --CCSCCS-TTTCCCSSSEECCCSSSCSCSCEETTTSSCSS---CTTSCCCSSH
T ss_pred CCCCCcEE-EeCCCCCCCEEEecCCCCccccCcCccCCCCc---CCCCCccCCh
Confidence 34556789 8996 6899999933377 799999999875 4679999973
No 57
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.31 E-value=2.4e-07 Score=69.33 Aligned_cols=42 Identities=29% Similarity=0.529 Sum_probs=36.8
Q ss_pred cccccccCCc-eeeec--cCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 61 HYCHVCGKAS-KFYCL--CCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 61 h~C~~C~~~~-~~~C~--~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
..|.+|++++ ++.|+ .||++||..||. |..+|.+.|+|+.|.
T Consensus 16 ~~C~~C~~~G~ll~CD~~~Cp~~fH~~Cl~---L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 16 DYCFQCGDGGELVMCDKKDCPKAYHLLCLN---LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SSCTTTCCCSEEEECCSTTCCCEECTGGGT---CSSCCSSCCCCGGGB
T ss_pred CCCCcCCCCCcEeEECCCCCCcccccccCc---CCcCCCCCEECCCCC
Confidence 3578898776 79999 899999999998 788999999999774
No 58
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.27 E-value=4e-07 Score=66.75 Aligned_cols=39 Identities=26% Similarity=0.706 Sum_probs=32.3
Q ss_pred cceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 17 CYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 17 C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
|..+.++|.||.|| .|++.||..|++++... +| ..|+||
T Consensus 33 C~~~~~~~~mi~Cd--~C~~w~H~~C~~~~~~~-~p-~~w~C~ 71 (98)
T 2lv9_A 33 CGFTHDDGYMICCD--KCSVWQHIDCMGIDRQH-IP-DTYLCE 71 (98)
T ss_dssp TSCCSCSSCEEEBT--TTCBEEETTTTTCCTTS-CC-SSBCCT
T ss_pred CCCccCCCcEEEcC--CCCCcCcCcCCCCCccC-CC-CCEECC
Confidence 55556689999999 99999999999998765 34 479886
No 59
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.23 E-value=1.7e-07 Score=73.42 Aligned_cols=44 Identities=25% Similarity=0.771 Sum_probs=38.3
Q ss_pred cccccccCCc-eeeeccCCCCCCCcccCccccc-----cc--cCCcccCcCcH
Q 041905 61 HYCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFA-----VV--KRNKGFCNSCL 105 (191)
Q Consensus 61 h~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~-----~i--~~~~w~C~~C~ 105 (191)
.+|.+|+.++ ++.|+.||++||..||. +++. +| |.+.|.|+.|.
T Consensus 64 d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~-p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 64 EQCRWCAEGGNLICCDFCHNAFCKKCIL-RNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp CSCSSSCCCSSEEECSSSCCEEEHHHHH-HHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CeecccCCCCcEEeCCCCCCeeeHhhcC-CCCChhhhhhcccCCCCCEeeccc
Confidence 4789999987 89999999999999999 6553 33 78999999997
No 60
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.17 E-value=5e-07 Score=62.73 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=36.2
Q ss_pred ccccccCC----ceeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 62 YCHVCGKA----SKFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~----~~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
+|.+|++. .++.|+.|+..||..|+. ++...++.+.|+|+.|..
T Consensus 20 ~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~-~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 20 ICPGCNKPDDGSPMIGCDDCDDWYHWPCVG-IMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp CBTTTTBCCSSCCEEECSSSSSEEEHHHHT-CSSCCCSSSCCCCTTTHH
T ss_pred CCCCCCCCCCCCCEEEcCCCCcccccccCC-CCccCCCCCCEEChhccC
Confidence 34678775 379999999999999999 556666778999999974
No 61
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.01 E-value=7.4e-07 Score=68.71 Aligned_cols=68 Identities=25% Similarity=0.689 Sum_probs=49.7
Q ss_pred eEeeCCCCCCCcccccccCccccccCCCCCeeecCcccccccCCc-eeeeccCCCCCCCcccCccc-----cccc--cCC
Q 041905 26 LRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHYCHVCGKAS-KFYCLCCPSAVCKTCLYDAQ-----FAVV--KRN 97 (191)
Q Consensus 26 Li~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~-----l~~i--~~~ 97 (191)
.++|. .|-..|+..=...+. ++ ....|.+|+.++ ++.|+.||++||..|+. ++ +.+| +.+
T Consensus 34 v~~C~--~C~~~y~~~~~~~d~-----Dg----~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~-~~lg~~~l~~i~~~~~ 101 (129)
T 3ql9_A 34 VLICK--NCFKYYMSDDISRDS-----DG----MDEQCRWCAEGGNLICCDFCHNAFCKKCIL-RNLGRRELSTIMDENN 101 (129)
T ss_dssp CEEEH--HHHHHHHHSCCCBCT-----TS----CBSSCTTTCCCSEEEECSSSSCEEEHHHHH-HHTCHHHHHHHTCTTS
T ss_pred ceeCH--hHHhhhhccccccCC-----CC----CCCcCeecCCCCeeEecCCCchhhhHHHhC-CCcchhHHHHhccCCC
Confidence 56787 787767544322221 11 123689999987 78999999999999999 54 4566 789
Q ss_pred cccCcCcH
Q 041905 98 KGFCNSCL 105 (191)
Q Consensus 98 ~w~C~~C~ 105 (191)
.|.|..|.
T Consensus 102 ~W~C~~C~ 109 (129)
T 3ql9_A 102 QWYCYICH 109 (129)
T ss_dssp CCCCTTTC
T ss_pred CeEcCCcC
Confidence 99999996
No 62
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=97.82 E-value=4e-06 Score=60.05 Aligned_cols=50 Identities=26% Similarity=0.737 Sum_probs=40.1
Q ss_pred ccccccccccceec--ccCceEeeCCCCCCCcccccccCccc--------c---ccCCCCCeeec
Q 041905 8 TKEEISENWCYVCK--DGGKLRLCDHLRCPKVYHSECVDKDE--------S---FLVAETKWTCN 59 (191)
Q Consensus 8 ~~~~~~ed~C~vC~--dgGeLi~Cd~~~CpkayH~~Cl~~~~--------~---~~~~~g~W~Cp 59 (191)
++...+++.|.||. ..++|+-|. .|.|+||..||.+.. + ...++..|+|+
T Consensus 9 ~e~~~~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~ 71 (89)
T 1wil_A 9 REPVVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCH 71 (89)
T ss_dssp CCCCCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCT
T ss_pred ccCCCCCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCcccc
Confidence 34466899999999 678999999 999999999998851 1 12467889986
No 63
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=97.77 E-value=4.7e-06 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.533 Sum_probs=31.7
Q ss_pred cccC---Cceeeecc--CC-CCCCCcccCccccccccCCcccCcCcH
Q 041905 65 VCGK---ASKFYCLC--CP-SAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 65 ~C~~---~~~~~C~~--Cp-~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+|++ +.++.|+. |+ ..||..|+. |.++|.+.|+|+.|.
T Consensus 14 ~C~~~~~g~mi~CD~cdC~~~wfH~~Cvg---l~~~p~g~w~C~~C~ 57 (60)
T 2vnf_A 14 LCHQVSYGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCS 57 (60)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHH
T ss_pred ECCCcCCCCEEEeCCCCCCCceEehhcCC---CCcCCCCCEECcCcc
Confidence 4665 34899999 77 789999999 677888999999995
No 64
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=97.77 E-value=1.3e-05 Score=55.58 Aligned_cols=38 Identities=24% Similarity=0.533 Sum_probs=31.9
Q ss_pred cccC---Cceeeecc--CC-CCCCCcccCccccccccCCcccCcCcH
Q 041905 65 VCGK---ASKFYCLC--CP-SAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 65 ~C~~---~~~~~C~~--Cp-~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+|++ +.++.|+. |+ ..||..|+. |..+|.+.|+|+.|.
T Consensus 20 ~C~~~~~g~MI~CD~~~C~~~wfH~~Cvg---l~~~p~g~w~Cp~C~ 63 (71)
T 1wen_A 20 LCHQVSYGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCS 63 (71)
T ss_dssp TTCCCSCSSEECCSCSSCSCCCEETTTTT---CSSCCSSCCCCTTTS
T ss_pred ECCCCCCCCEeEeeCCCCCCccEecccCC---cCcCCCCCEECCCCC
Confidence 4666 34899999 88 699999999 667788999999995
No 65
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.74 E-value=8.8e-06 Score=56.22 Aligned_cols=46 Identities=33% Similarity=0.788 Sum_probs=35.6
Q ss_pred cccccccceecc--cCceEeeCCCCCC-CcccccccCccccccCCCCCeeecC
Q 041905 11 EISENWCYVCKD--GGKLRLCDHLRCP-KVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~d--gGeLi~Cd~~~Cp-kayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
..+..+|+ |++ .|++|.||.-.|| .-||..|+++.. .+.+.|+||.
T Consensus 3 ~~~~~yC~-C~~~~~g~MI~CD~cdC~~~WfH~~Cvgl~~---~p~~~w~Cp~ 51 (70)
T 1x4i_A 3 SGSSGYCI-CNQVSYGEMVGCDNQDCPIEWFHYGCVGLTE---APKGKWYCPQ 51 (70)
T ss_dssp CSCCCCST-TSCCCCSSEECCSCTTCSCCCEEHHHHTCSS---CCSSCCCCHH
T ss_pred CCCCeEEE-cCCCCCCCEeEeCCCCCCccCCcccccccCc---CCCCCEECCC
Confidence 45667886 885 6799999932255 789999999876 4689999973
No 66
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=97.70 E-value=1.6e-05 Score=58.10 Aligned_cols=42 Identities=14% Similarity=0.333 Sum_probs=33.6
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+|..+...+ ++.|+.|+..||..|+. +++..+|. .|+|+.|.
T Consensus 32 iC~~~~~~~~mi~Cd~C~~w~H~~C~~-~~~~~~p~-~w~C~~C~ 74 (98)
T 2lv9_A 32 ICGFTHDDGYMICCDKCSVWQHIDCMG-IDRQHIPD-TYLCERCQ 74 (98)
T ss_dssp TTSCCSCSSCEEEBTTTCBEEETTTTT-CCTTSCCS-SBCCTTTS
T ss_pred ECCCccCCCcEEEcCCCCCcCcCcCCC-CCccCCCC-CEECCCCc
Confidence 455555444 79999999999999999 66666664 79999996
No 67
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.67 E-value=2.2e-05 Score=52.66 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=38.7
Q ss_pred ccccccccceecc----cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 10 EEISENWCYVCKD----GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 10 ~~~~ed~C~vC~d----gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
++.+..+|.+|+. ++.+|.|| .|..=||..|+++....+.....|+|+
T Consensus 2 s~~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 53 (64)
T 1we9_A 2 SSGSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCP 53 (64)
T ss_dssp CCSSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCH
T ss_pred CCCCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECC
Confidence 3566788999985 57799999 999999999999987543334789886
No 68
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=97.66 E-value=8.6e-06 Score=54.42 Aligned_cols=38 Identities=24% Similarity=0.623 Sum_probs=31.6
Q ss_pred cccC---Cceeeecc--CC-CCCCCcccCccccccccCCcccCcCcH
Q 041905 65 VCGK---ASKFYCLC--CP-SAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 65 ~C~~---~~~~~C~~--Cp-~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+|++ +.++.|+. |+ ..||..|+. |..+|.+.|+|+.|.
T Consensus 13 ~C~~~~~g~mi~CD~~~C~~~wfH~~Cvg---l~~~p~~~w~Cp~C~ 56 (59)
T 3c6w_A 13 LCHQVSYGEMIGCDNPDCPIEWFHFACVD---LTTKPKGKWFCPRCV 56 (59)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHH
T ss_pred ECCCCCCCCeeEeeCCCCCCCCEecccCC---cccCCCCCEECcCcc
Confidence 4665 34899999 88 699999999 667788999999995
No 69
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=97.65 E-value=6.6e-06 Score=65.18 Aligned_cols=46 Identities=28% Similarity=0.577 Sum_probs=36.2
Q ss_pred cccccccceeccc----CceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 11 EISENWCYVCKDG----GKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 11 ~~~ed~C~vC~dg----GeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
+.+..+| +|+.+ |.+|.|| .|++.||..|++.........+.|+||
T Consensus 5 ~~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~ 54 (174)
T 2ri7_A 5 SDTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCP 54 (174)
T ss_dssp --CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCH
T ss_pred CCCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecC
Confidence 4567889 99974 5699999 999999999999876433346899886
No 70
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=97.62 E-value=8.2e-06 Score=64.85 Aligned_cols=51 Identities=24% Similarity=0.664 Sum_probs=43.1
Q ss_pred ccccccccccceecccCceEeeCCCCCCCcccccccCccccc-----cCCCCCeee
Q 041905 8 TKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESF-----LVAETKWTC 58 (191)
Q Consensus 8 ~~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~-----~~~~g~W~C 58 (191)
+.++..+.||.+|++||+|++||...|+++|=..||...... +.....|.|
T Consensus 73 ~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~C 128 (159)
T 3a1b_A 73 YDDDGYQSYCTICCGGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNC 128 (159)
T ss_dssp BCTTSSBSSCTTTSCCSEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCC
T ss_pred cCCCCCcceeeEecCCCeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEE
Confidence 456778999999999999999998889999999999876532 245788987
No 71
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=97.61 E-value=1.1e-05 Score=54.43 Aligned_cols=38 Identities=21% Similarity=0.596 Sum_probs=31.3
Q ss_pred cccC---Cceeeecc--CC-CCCCCcccCccccccccCCcccCcCcH
Q 041905 65 VCGK---ASKFYCLC--CP-SAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 65 ~C~~---~~~~~C~~--Cp-~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+|++ +.++.|+. |+ ..||..|+. |..+|.+.|+|+.|.
T Consensus 15 ~C~~~~~g~MI~CD~c~C~~~WfH~~Cvg---l~~~p~~~w~Cp~C~ 58 (62)
T 2g6q_A 15 LCNQVSYGEMIGCDNEQCPIEWFHFSCVS---LTYKPKGKWYCPKCR 58 (62)
T ss_dssp TTTEECCSEEEECSCTTCSSCEEETGGGT---CSSCCSSCCCCHHHH
T ss_pred ECCCCCCCCeeeeeCCCCCcccEecccCC---cCcCCCCCEECcCcc
Confidence 4655 33899999 77 899999999 566788999999995
No 72
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=97.61 E-value=2.4e-05 Score=56.71 Aligned_cols=41 Identities=22% Similarity=0.474 Sum_probs=32.5
Q ss_pred cccC---CceeeeccC--C-CCCCCcccCccccccccCCcccCcC-cHHHH
Q 041905 65 VCGK---ASKFYCLCC--P-SAVCKTCLYDAQFAVVKRNKGFCNS-CLELA 108 (191)
Q Consensus 65 ~C~~---~~~~~C~~C--p-~syh~~Cl~~~~l~~i~~~~w~C~~-C~~~~ 108 (191)
+|++ +.++.|+.| + ..||..|+. |..+|.+.|+|+. |.++.
T Consensus 30 iC~~~~~g~MI~CD~c~C~~eWfH~~CVg---l~~~p~~~W~Cp~cC~~~~ 77 (90)
T 2jmi_A 30 FCRNVSYGPMVACDNPACPFEWFHYGCVG---LKQAPKGKWYCSKDCKEIA 77 (90)
T ss_dssp TTTCCCSSSEECCCSSSCSCSCEETTTSS---CSSCTTSCCCSSHHHHHHH
T ss_pred EeCCCCCCCEEEecCCCCccccCcCccCC---CCcCCCCCccCChhhcchh
Confidence 4554 348999995 4 799999999 5667889999999 98653
No 73
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.60 E-value=3.2e-05 Score=56.11 Aligned_cols=38 Identities=24% Similarity=0.533 Sum_probs=31.4
Q ss_pred cccC---Cceeeecc--CC-CCCCCcccCccccccccCCcccCcCcH
Q 041905 65 VCGK---ASKFYCLC--CP-SAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 65 ~C~~---~~~~~C~~--Cp-~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+|++ +.++.|+. |+ ..||..|+. |..+|.+.|+|+.|.
T Consensus 40 iC~~~~~g~MI~CD~~dC~~~WfH~~CVg---l~~~p~g~W~Cp~C~ 83 (91)
T 1weu_A 40 LCHQVSYGEMIGCDNPDCSIEWFHFACVG---LTTKPRGKWFCPRCS 83 (91)
T ss_dssp TTCCBCCSCCCCCSCSSCSCCCCCSTTTT---CSSCCCSSCCCTTTC
T ss_pred ECCCCCCCCEeEecCCCCCCCCEecccCC---cCcCCCCCEECcCcc
Confidence 4555 34899999 88 689999999 566788999999995
No 74
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.51 E-value=3.1e-05 Score=57.59 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=52.5
Q ss_pred cccceecccCceEeeCCCCCCCcccccccCccccccCCCCCeeecC------c---ccccccC---C-----ceeeeccC
Q 041905 15 NWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW------H---YCHVCGK---A-----SKFYCLCC 77 (191)
Q Consensus 15 d~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~------h---~C~~C~~---~-----~~~~C~~C 77 (191)
.+|.+|+... |+ .|...||+.|++++...-..-..+.|.. . .|..|.. . .++.|+.|
T Consensus 8 ~~C~~C~~~~----C~--~C~~c~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~c~~c~~c~~c~~~~~~~~~m~~C~~C 81 (117)
T 4bbq_A 8 RKCKACVQGE----CG--VCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCIC 81 (117)
T ss_dssp SCSHHHHSCC----CS--CSHHHHHSGGGTSCCCSCCCCGGGCCSSCBCCTTCBCTTTCCBCCHHHHCCGGGSCEEETTT
T ss_pred CcCcCcCCcC----CC--CCCCCcCCcccCCCCccccchhheeeccccccccccccccCcccccccccccCcceEEeeec
Confidence 4677777653 99 9999999999988752111111122221 1 2222221 1 16889999
Q ss_pred CCCCCCcccCccccccc----cCCcccCcCcHH
Q 041905 78 PSAVCKTCLYDAQFAVV----KRNKGFCNSCLE 106 (191)
Q Consensus 78 p~syh~~Cl~~~~l~~i----~~~~w~C~~C~~ 106 (191)
...||..|++ +....+ ..+.|+|+.|.+
T Consensus 82 ~~~~H~~C~~-~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 82 NEIVHPGCLQ-MDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CCEECGGGCC-SCCCCEECSSSSSEEECTTTC-
T ss_pred CCeEECCCCC-CCccccccccCCCCeECCCCcC
Confidence 9999999998 332222 235699999963
No 75
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=97.03 E-value=8.2e-05 Score=66.57 Aligned_cols=51 Identities=27% Similarity=0.700 Sum_probs=43.1
Q ss_pred ccccccccccceecccCceEeeCCCCCCCcccccccCccccc-----cCCCCCeee
Q 041905 8 TKEEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDKDESF-----LVAETKWTC 58 (191)
Q Consensus 8 ~~~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~~~~~-----~~~~g~W~C 58 (191)
+.++..+.+|.+|++||+|++||...|+++|-..|+...... +.....|.|
T Consensus 87 ~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~C 142 (386)
T 2pv0_B 87 YDDDGYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVC 142 (386)
T ss_dssp BCSSSSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCC
T ss_pred cCCCCCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceE
Confidence 456788999999999999999999999999999999887631 234688987
No 76
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.03 E-value=0.00019 Score=50.20 Aligned_cols=46 Identities=22% Similarity=0.602 Sum_probs=35.8
Q ss_pred cccccccceecc----cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 11 EISENWCYVCKD----GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 11 ~~~ed~C~vC~d----gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
+....+| +|+. ++.+|.|| .|..=||..|+++..........|+|+
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 58 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCP 58 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCT
T ss_pred cCCccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECC
Confidence 3445677 7886 57899999 999999999999987543334789886
No 77
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.98 E-value=0.00025 Score=48.80 Aligned_cols=49 Identities=14% Similarity=0.288 Sum_probs=35.7
Q ss_pred CCCeeecCcccccccCCceeeeccCC---CCCCCcccCccccccccCCcccCcCcHHH
Q 041905 53 ETKWTCNWHYCHVCGKASKFYCLCCP---SAVCKTCLYDAQFAVVKRNKGFCNSCLEL 107 (191)
Q Consensus 53 ~g~W~Cp~h~C~~C~~~~~~~C~~Cp---~syh~~Cl~~~~l~~i~~~~w~C~~C~~~ 107 (191)
+...+| +|.....+.++.|+.|. .-||..|+. |..+|.+.|+|+.|...
T Consensus 4 ~~~~yC---~C~~~~~g~MI~CD~cdC~~~WfH~~Cvg---l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 4 GSSGYC---ICNQVSYGEMVGCDNQDCPIEWFHYGCVG---LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp SCCCCS---TTSCCCCSSEECCSCTTCSCCCEEHHHHT---CSSCCSSCCCCHHHHHH
T ss_pred CCCeEE---EcCCCCCCCEeEeCCCCCCccCCcccccc---cCcCCCCCEECCCCCcc
Confidence 445556 34443334589999964 789999999 45567899999999754
No 78
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=96.97 E-value=6e-05 Score=59.59 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=47.0
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHHHHH--------------HHhhhccc-cCCCCccCCCCCCccccC
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLELAW--------------LIETNKDV-KSVGCNIDVNHPKTTDYF 135 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~~~--------------~iek~~~~-~~~~~~vd~~d~~~~E~~ 135 (191)
++.|+.|+.-||..|+.-.+......+.|+|+.|..... .+++++.. ........|..|...+ .
T Consensus 23 mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~l~~il~~l~~~~~~~~F~~pv~~~-~ 101 (174)
T 2ri7_A 23 YIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPLTEKDYEGLKRVLRSLQAHKMAWPFLEPVDPN-D 101 (174)
T ss_dssp EEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHHTTTSBCCHHHHHHHHHHHHHHHTSGGGTTTSSCCCTT-T
T ss_pred EeECCCCCchhChhhcCCchhhccCccCeecCCCcchhccccccccCCHHHHHHHHHHHHHHHhhhhhhhhhcCCCcc-c
Confidence 799999999999999984332222467999999984332 22222221 1111222344433222 2
Q ss_pred CcceeEEeeeccCCC
Q 041905 136 FNGYWQTIKQKEGLT 150 (191)
Q Consensus 136 ~~~YW~~~k~k~~l~ 150 (191)
...|+.+|+...+|+
T Consensus 102 ~pdY~~~I~~PmdL~ 116 (174)
T 2ri7_A 102 APDYYGVIKEPMDLA 116 (174)
T ss_dssp CHHHHHHCSSCCCHH
T ss_pred CCchHHHhCCcCCHH
Confidence 567888887765554
No 79
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=96.94 E-value=0.00042 Score=47.37 Aligned_cols=45 Identities=20% Similarity=0.425 Sum_probs=35.2
Q ss_pred ccccccccceecc---cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 10 EEISENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 10 ~~~~ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
.....-+| +|+. |+.+|.|| .|..=||..|+++.... ....|+||
T Consensus 15 ~~~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~~--~~~~~~C~ 62 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKSN--VPEVFVCQ 62 (68)
T ss_dssp TTTTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTTS--CCSSCCCH
T ss_pred CCCCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCccc--CCCcEECC
Confidence 34456678 8986 34699999 99999999999998754 23689886
No 80
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.86 E-value=0.00051 Score=47.10 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=35.4
Q ss_pred ccccccccceeccc---C-ceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 10 EEISENWCYVCKDG---G-KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 10 ~~~~ed~C~vC~dg---G-eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
++....+| +|+.. | .+|.|| .|..=||..|+++.... .....|+||
T Consensus 12 ~~~~~~~C-~C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~-~~~~~~~C~ 61 (72)
T 1wee_A 12 VDNWKVDC-KCGTKDDDGERMLACD--GCGVWHHTRCIGINNAD-ALPSKFLCF 61 (72)
T ss_dssp SCSSEECC-TTCCCSCCSSCEEECS--SSCEEEETTTTTCCTTS-CCCSCCCCH
T ss_pred CCCcceEe-eCCCccCCCCcEEECC--CCCCccCCeeeccCccc-cCCCcEECC
Confidence 34556779 69853 4 599999 99999999999998643 235789886
No 81
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.81 E-value=0.00054 Score=47.77 Aligned_cols=46 Identities=22% Similarity=0.489 Sum_probs=36.2
Q ss_pred cccccceecc---cCceEeeCCCCCCCcccccccCcccccc----CCCCCeeec
Q 041905 13 SENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDESFL----VAETKWTCN 59 (191)
Q Consensus 13 ~ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~~~~----~~~g~W~Cp 59 (191)
...+| +|+. .|.+|-||...|..-||..|+++..... .....|+||
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~ 67 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCE 67 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCH
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECC
Confidence 45678 7986 4899999977899999999999986531 124689886
No 82
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=96.72 E-value=0.00077 Score=45.78 Aligned_cols=46 Identities=20% Similarity=0.474 Sum_probs=33.0
Q ss_pred cccccceecc---cCceEeeCCCCCCCcccccccCccccccC---CCCCeeec
Q 041905 13 SENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDESFLV---AETKWTCN 59 (191)
Q Consensus 13 ~ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~---~~g~W~Cp 59 (191)
..-+| +|+. .|.+|.||...|..-||..|++....... ....|+||
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~ 60 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCH
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECc
Confidence 35668 6864 58899999334999999999998754211 12479886
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.70 E-value=0.00038 Score=49.83 Aligned_cols=48 Identities=23% Similarity=0.476 Sum_probs=36.5
Q ss_pred cccccccC---CceeeeccCCCCCCCcccCcc-----------ccccccCCcccCcCcHHHH
Q 041905 61 HYCHVCGK---ASKFYCLCCPSAVCKTCLYDA-----------QFAVVKRNKGFCNSCLELA 108 (191)
Q Consensus 61 h~C~~C~~---~~~~~C~~Cp~syh~~Cl~~~-----------~l~~i~~~~w~C~~C~~~~ 108 (191)
..|.+|.. ..++.|..|++.||..||..+ .+...+...|.|+.|..+.
T Consensus 16 ~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp CCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred cccCccccccccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 36788884 348999999999999999842 1333467899999996543
No 84
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.68 E-value=0.00025 Score=49.06 Aligned_cols=46 Identities=24% Similarity=0.677 Sum_probs=35.3
Q ss_pred cccccccceecc---cCceEeeCCCCCCCcccccccCcccccc----CCCCCeeec
Q 041905 11 EISENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDESFL----VAETKWTCN 59 (191)
Q Consensus 11 ~~~ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~~~~----~~~g~W~Cp 59 (191)
+.+..+| +|+. ++.+|.|| .|..=||..|+++..... .....|+|+
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~ 65 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICP 65 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCH
T ss_pred CCCCCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECc
Confidence 3345778 7986 46899999 999999999999986421 035789997
No 85
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=96.22 E-value=0.0011 Score=48.89 Aligned_cols=44 Identities=32% Similarity=0.727 Sum_probs=34.8
Q ss_pred cccceeccc----CceEeeCCCCCCCcccccccCcccccc-----CCCCCeeec
Q 041905 15 NWCYVCKDG----GKLRLCDHLRCPKVYHSECVDKDESFL-----VAETKWTCN 59 (191)
Q Consensus 15 d~C~vC~dg----GeLi~Cd~~~CpkayH~~Cl~~~~~~~-----~~~g~W~Cp 59 (191)
..|.+|+.. |++|.|| ..|..=||..|+++....+ .++..|+||
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp 56 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACD 56 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCH
T ss_pred CCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECc
Confidence 469999875 7888886 2899999999999986321 256899997
No 86
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=96.21 E-value=0.0019 Score=43.02 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=30.8
Q ss_pred ccccCC-----ceeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 64 HVCGKA-----SKFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 64 ~~C~~~-----~~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
.+|++. .++.|+.|..=||..|+.-..-.......|+|+.|..
T Consensus 10 ~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 10 GACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 456654 2799999999999999994322111247899999963
No 87
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=95.78 E-value=0.0025 Score=41.03 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=31.8
Q ss_pred cceecc----cCceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 17 CYVCKD----GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 17 C~vC~d----gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
|-+|+. ++.+|.||. .|..=||..|+++..... ....|+||.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~-~~~~~~C~~ 50 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMA-ENEDYICIN 50 (52)
T ss_dssp CTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHH-HHSCCCCSC
T ss_pred CCCCcCccCCCCcEEEeCC-CCCccCcccccCCCcccc-CCCCEECCC
Confidence 456664 456999995 599999999999987542 237899974
No 88
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.73 E-value=0.0018 Score=43.90 Aligned_cols=49 Identities=24% Similarity=0.553 Sum_probs=36.2
Q ss_pred cccccccceeccc----CceEeeCCCCCCCcccccccCcccccc-----CCCCCeeecC
Q 041905 11 EISENWCYVCKDG----GKLRLCDHLRCPKVYHSECVDKDESFL-----VAETKWTCNW 60 (191)
Q Consensus 11 ~~~ed~C~vC~dg----GeLi~Cd~~~CpkayH~~Cl~~~~~~~-----~~~g~W~Cp~ 60 (191)
......|.+|+.. ..+|.||. .|.+=||..|+++....+ .+.+.|+||.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~ 62 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDT 62 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHH
T ss_pred CCCcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcC
Confidence 3456779999974 35999995 899999999999987421 2667999973
No 89
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=95.70 E-value=0.00031 Score=55.79 Aligned_cols=93 Identities=19% Similarity=0.437 Sum_probs=64.7
Q ss_pred ccccceecccC--------ceEeeCCCCCCCcccccccCccccccCCCCCeeecCcccccccCCc-eeeec--cCCCCCC
Q 041905 14 ENWCYVCKDGG--------KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHYCHVCGKAS-KFYCL--CCPSAVC 82 (191)
Q Consensus 14 ed~C~vC~dgG--------eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~C~~C~~~~-~~~C~--~Cp~syh 82 (191)
++.|..|+.-- +.++|. .|-..|+..-...+. +|. ...|.+|..++ ++.|+ .|+++||
T Consensus 36 e~~Ct~CG~~~~~~~HPlf~v~lC~--~Ck~~y~e~~f~~De-----DG~----~~yC~wC~~Gg~l~~Cdn~~C~r~FC 104 (159)
T 3a1b_A 36 EDICISCGSLNVTLEHPLFVGGMCQ--NCKNCFLECAYQYDD-----DGY----QSYCTICCGGREVLMCGNNNCCRCFC 104 (159)
T ss_dssp GGSBTTTCCSCCCEECSSBSSEECH--HHHHHHHHHTTCBCT-----TSS----BSSCTTTSCCSEEEECSSTTTCCEEE
T ss_pred cCcccCCCCcCccccCCCccchhhH--HHHHHHhhcccccCC-----CCC----cceeeEecCCCeEEeeCCCCCCCchh
Confidence 78999998632 356788 888888655444432 222 34789999887 89999 8999999
Q ss_pred CcccCc---c-cccc-ccCCcccCcCcH--HHHHHHhhhccc
Q 041905 83 KTCLYD---A-QFAV-VKRNKGFCNSCL--ELAWLIETNKDV 117 (191)
Q Consensus 83 ~~Cl~~---~-~l~~-i~~~~w~C~~C~--~~~~~iek~~~~ 117 (191)
..|+.. + .+.. +....|.|--|. ++.++|++...|
T Consensus 105 ~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~~R~dw 146 (159)
T 3a1b_A 105 VECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLRRREDW 146 (159)
T ss_dssp HHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEEBCTTH
T ss_pred HHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhhhhhhH
Confidence 999982 1 2343 357899998887 334555555555
No 90
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=95.61 E-value=0.0028 Score=46.70 Aligned_cols=45 Identities=18% Similarity=0.499 Sum_probs=33.7
Q ss_pred ccccccCC-----ceeeec-cCCCCCCCcccCccc--ccc---ccCCcccCcCcHH
Q 041905 62 YCHVCGKA-----SKFYCL-CCPSAVCKTCLYDAQ--FAV---VKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~-----~~~~C~-~Cp~syh~~Cl~~~~--l~~---i~~~~w~C~~C~~ 106 (191)
.|.+|++. ..+.|+ .|..=||..|+.-.. +.. .+...|+|+.|..
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 46678776 268887 999999999999432 122 2668999999974
No 91
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=95.45 E-value=0.0086 Score=38.37 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=27.9
Q ss_pred cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 23 GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 23 gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
|+.+|-|| .|..=||..|+++.... ....|+||
T Consensus 15 ~~~MI~Cd--~C~~W~H~~Cvgi~~~~--~~~~~~C~ 47 (52)
T 3o7a_A 15 GRPMIECN--ECHTWIHLSCAKIRKSN--VPEVFVCQ 47 (52)
T ss_dssp TCCEEECT--TTCCEEETTTTTCCGGG--CCSSCCCH
T ss_pred CCCEEEcC--CCCccccccccCCCccc--CCCcEECc
Confidence 56899999 99999999999998764 23689886
No 92
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=95.29 E-value=0.0058 Score=41.59 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=26.7
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
++.|+.|..=||..|+.... ..++ +.|+|+.|.
T Consensus 33 MIqCd~C~~WfH~~Cvgi~~-~~~~-~~~~C~~C~ 65 (68)
T 3o70_A 33 MIECNECHTWIHLSCAKIRK-SNVP-EVFVCQKCR 65 (68)
T ss_dssp EEECTTTCCEEETTTTTCCT-TSCC-SSCCCHHHH
T ss_pred EEECCCCCccccccccCcCc-ccCC-CcEECCCCC
Confidence 79999999999999999432 2333 699999995
No 93
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=95.21 E-value=0.0056 Score=41.77 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=27.9
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
++.|+.|..=||..|+.-..... ....|+|+.|..
T Consensus 31 mI~Cd~C~~W~H~~Cvg~~~~~~-~~~~~~C~~C~~ 65 (72)
T 1wee_A 31 MLACDGCGVWHHTRCIGINNADA-LPSKFLCFRCIE 65 (72)
T ss_dssp EEECSSSCEEEETTTTTCCTTSC-CCSCCCCHHHHH
T ss_pred EEECCCCCCccCCeeeccCcccc-CCCcEECCCccC
Confidence 79999999999999999443223 347999999964
No 94
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.15 E-value=0.0065 Score=41.82 Aligned_cols=44 Identities=25% Similarity=0.576 Sum_probs=33.5
Q ss_pred cccccceecc----cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 13 SENWCYVCKD----GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 13 ~ed~C~vC~d----gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
..-+| +|+. ++.+|.|| .|..=||..|++.....+.....|+||
T Consensus 9 ~~~yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~ 56 (75)
T 3kqi_A 9 VPVYC-VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCP 56 (75)
T ss_dssp CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCH
T ss_pred CeeEE-ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECC
Confidence 34556 6775 35799999 999999999999987542234679886
No 95
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=95.05 E-value=0.0029 Score=42.78 Aligned_cols=44 Identities=16% Similarity=0.474 Sum_probs=33.0
Q ss_pred ccccccCCc-----eeeec-cCCCCCCCcccCccc-----cccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-----KFYCL-CCPSAVCKTCLYDAQ-----FAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-----~~~C~-~Cp~syh~~Cl~~~~-----l~~i~~~~w~C~~C~ 105 (191)
.|.+|++.- .+.|+ .|..=||..|+.-.+ |..-|...|+|+.|.
T Consensus 10 ~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 10 PCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp BCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred cCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 446787752 69999 999999999999432 112266799999985
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.65 E-value=0.0087 Score=41.54 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=27.6
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
++.|+.|..=||..|+.-..-.......|+|+.|..
T Consensus 27 MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 62 (79)
T 1wep_A 27 MIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEA 62 (79)
T ss_dssp EEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTT
T ss_pred eEEcCCCCCcEEeeecCcccccccCCCeEECCCccc
Confidence 699999999999999994332222247999999963
No 97
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=94.48 E-value=0.015 Score=37.25 Aligned_cols=42 Identities=14% Similarity=0.398 Sum_probs=29.5
Q ss_pred cccccCCc-----eeeec-cCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 63 CHVCGKAS-----KFYCL-CCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 63 C~~C~~~~-----~~~C~-~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
|-+|+++. .+.|+ .|..=||..|+.-.. .......|+|+.|.
T Consensus 5 cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~-~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 5 AQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSP-EMAENEDYICINCA 52 (52)
T ss_dssp CTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCH-HHHHHSCCCCSCC-
T ss_pred CCCCcCccCCCCcEEEeCCCCCccCcccccCCCc-cccCCCCEECCCCC
Confidence 45565542 68999 899999999999432 11123889999984
No 98
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=94.11 E-value=0.0085 Score=41.19 Aligned_cols=42 Identities=14% Similarity=0.386 Sum_probs=30.6
Q ss_pred cccCC----ceeeeccCCCCCCCcccCccccc--cc--cCCcccCcCcHH
Q 041905 65 VCGKA----SKFYCLCCPSAVCKTCLYDAQFA--VV--KRNKGFCNSCLE 106 (191)
Q Consensus 65 ~C~~~----~~~~C~~Cp~syh~~Cl~~~~l~--~i--~~~~w~C~~C~~ 106 (191)
+|++. .++.|+.|..=||..|+.-..-. .+ ....|+|+.|..
T Consensus 20 ~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 20 ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 46654 37999999999999999943211 11 357999999964
No 99
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=94.07 E-value=0.0015 Score=58.37 Aligned_cols=82 Identities=21% Similarity=0.504 Sum_probs=58.1
Q ss_pred cccccceecccC--------ceEeeCCCCCCCcccccccCccccccCCCCCeeecCcccccccCCc-eeeec--cCCCCC
Q 041905 13 SENWCYVCKDGG--------KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNWHYCHVCGKAS-KFYCL--CCPSAV 81 (191)
Q Consensus 13 ~ed~C~vC~dgG--------eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~h~C~~C~~~~-~~~C~--~Cp~sy 81 (191)
-++.|..|+.-. +.++|. .|-..|+..-...+ +..+ ...|..|..++ ++.|+ .|+++|
T Consensus 49 ~e~~C~~CG~~~~~~~HPl~~v~lC~--~Ck~~y~~~~f~~D------~DG~---~~yCr~C~~Gg~l~~Cdn~~C~r~F 117 (386)
T 2pv0_B 49 IEDICICCGSLQVHTQHPLFEGGICA--PCKDKFLDALFLYD------DDGY---QSYCSICCSGETLLICGNPDCTRCY 117 (386)
T ss_dssp GGGSBTTTCCSCCCSBCSSBSSBCCH--HHHHHHHTTTTCBC------SSSS---BCSCTTTCCCSSCEECCSTTCCCEE
T ss_pred ccceeCCCCCcCccccCCCcCcchhh--HHHHHHhccCcccC------CCCC---cccceEcCCCCeEEEeCCCCCCcch
Confidence 468999998753 356777 78777764333332 2223 34889999887 89999 999999
Q ss_pred CCcccCcc----ccccc-cCCcccCcCcH
Q 041905 82 CKTCLYDA----QFAVV-KRNKGFCNSCL 105 (191)
Q Consensus 82 h~~Cl~~~----~l~~i-~~~~w~C~~C~ 105 (191)
|..|+... .+..| ....|.|--|.
T Consensus 118 C~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 118 CFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp CHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred HHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 99999831 23333 45899998887
No 100
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=93.86 E-value=0.0095 Score=54.68 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=35.4
Q ss_pred cccccccceecc----cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 11 EISENWCYVCKD----GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 11 ~~~ed~C~vC~d----gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
+....+| +|+. +|.+|-|| .|..=||..|++.........+.|+||
T Consensus 34 ~~~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~ 83 (488)
T 3kv5_D 34 PPPPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCP 83 (488)
T ss_dssp CCCCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCH
T ss_pred CCCCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECC
Confidence 3345667 7885 57899999 999999999999987542224689997
No 101
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=93.66 E-value=0.023 Score=36.28 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=26.4
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
++.|+.|..=||..|+.-.. ..+ ...|+|+.|.
T Consensus 18 MI~Cd~C~~W~H~~Cvgi~~-~~~-~~~~~C~~C~ 50 (52)
T 3o7a_A 18 MIECNECHTWIHLSCAKIRK-SNV-PEVFVCQKCR 50 (52)
T ss_dssp EEECTTTCCEEETTTTTCCG-GGC-CSSCCCHHHH
T ss_pred EEEcCCCCccccccccCCCc-ccC-CCcEECcCCC
Confidence 79999999999999999432 223 3799999885
No 102
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=93.62 E-value=0.017 Score=39.97 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=33.7
Q ss_pred CCCCeeecCcccccccCC----ceeeec--cCCCCCCCcccCcccccc----ccCCcccCcCcHH
Q 041905 52 AETKWTCNWHYCHVCGKA----SKFYCL--CCPSAVCKTCLYDAQFAV----VKRNKGFCNSCLE 106 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~----~~~~C~--~Cp~syh~~Cl~~~~l~~----i~~~~w~C~~C~~ 106 (191)
++...+| +|+.. .++.|+ .|..=||..|+.-+.-.. .....|+|+.|..
T Consensus 13 ~~~~~~C------iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 13 PEIKVRC------VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCCCCCC------SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred CCCCEEe------ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 4455555 36654 279999 999999999999432211 1236899999963
No 103
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=92.56 E-value=0.022 Score=39.13 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=28.0
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHHH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLEL 107 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~ 107 (191)
++.|+.|..=||..|+.-.+-.......|+|+.|...
T Consensus 25 MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 25 MIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 7999999999999999943222222368999999754
No 104
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=92.56 E-value=0.057 Score=39.59 Aligned_cols=34 Identities=29% Similarity=0.615 Sum_probs=26.1
Q ss_pred ceEeeCCCCCCCcccccccCccccccC---CCCCeeecC
Q 041905 25 KLRLCDHLRCPKVYHSECVDKDESFLV---AETKWTCNW 60 (191)
Q Consensus 25 eLi~Cd~~~CpkayH~~Cl~~~~~~~~---~~g~W~Cp~ 60 (191)
.||.|+ .|...||..|+++..+.++ ....|.||.
T Consensus 74 ~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~ 110 (117)
T 4bbq_A 74 KLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPK 110 (117)
T ss_dssp SCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTT
T ss_pred ceEEee--ecCCeEECCCCCCCccccccccCCCCeECCC
Confidence 388999 9999999999998764322 234699974
No 105
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=91.97 E-value=0.044 Score=36.86 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=25.0
Q ss_pred eeeec--cCCCCCCCcccCccc--ccc-ccCCcccCcCcH
Q 041905 71 KFYCL--CCPSAVCKTCLYDAQ--FAV-VKRNKGFCNSCL 105 (191)
Q Consensus 71 ~~~C~--~Cp~syh~~Cl~~~~--l~~-i~~~~w~C~~C~ 105 (191)
++.|+ .|..=||..|+.-.. ... .....|+|+.|.
T Consensus 24 mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr 63 (68)
T 2rsd_A 24 MIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR 63 (68)
T ss_dssp EEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred EEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence 79998 599999999997321 111 112579999996
No 106
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.54 E-value=0.031 Score=45.00 Aligned_cols=43 Identities=28% Similarity=0.752 Sum_probs=31.6
Q ss_pred cccceeccc---C----ceEeeCCCCCCCcccccccCccccc---c---CCCCCeeec
Q 041905 15 NWCYVCKDG---G----KLRLCDHLRCPKVYHSECVDKDESF---L---VAETKWTCN 59 (191)
Q Consensus 15 d~C~vC~dg---G----eLi~Cd~~~CpkayH~~Cl~~~~~~---~---~~~g~W~Cp 59 (191)
.+|.+|+.. + .+|.|| .|.+=||..|+++..+. + +....|+||
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp 58 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCV 58 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECc
Confidence 578899852 3 499999 99999999999997531 0 112378886
No 107
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=91.48 E-value=0.061 Score=38.16 Aligned_cols=33 Identities=30% Similarity=0.745 Sum_probs=27.9
Q ss_pred ccccceecc--cCceEeeCCCCCCCcccccccCcc
Q 041905 14 ENWCYVCKD--GGKLRLCDHLRCPKVYHSECVDKD 46 (191)
Q Consensus 14 ed~C~vC~d--gGeLi~Cd~~~CpkayH~~Cl~~~ 46 (191)
.-.|.+|++ .|-.|-|..+.|.++||+.|....
T Consensus 17 ~l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQKGVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHHC
Confidence 456999986 388999998899999999997654
No 108
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=87.70 E-value=0.19 Score=46.59 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=28.4
Q ss_pred ceEeeCCCCCCCcccccccCccccccCCCCCeeecC
Q 041905 25 KLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCNW 60 (191)
Q Consensus 25 eLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp~ 60 (191)
.+|.|| .|..=||..|++.........+.|+||.
T Consensus 57 ~mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~ 90 (528)
T 3pur_A 57 QWIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPK 90 (528)
T ss_dssp SEEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTT
T ss_pred CEEECC--CCCcCCCCcCCCCChhHhcCCCeEECcC
Confidence 589999 9999999999999876433457899985
No 109
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.72 E-value=0.44 Score=32.90 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=27.6
Q ss_pred ccccccccccccccceeccc----CceEe-eCCCCCCCcccccccCccc
Q 041905 4 KKRLTKEEISENWCYVCKDG----GKLRL-CDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 4 ~~~~~~~~~~ed~C~vC~dg----GeLi~-Cd~~~CpkayH~~Cl~~~~ 47 (191)
..+.......++.|.||.+. +.|+. |.-++.-..||..||..=+
T Consensus 5 ~s~~s~~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl 53 (80)
T 2d8s_A 5 SSGTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI 53 (80)
T ss_dssp CCCCCCCCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHH
T ss_pred cCCCCCCCCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHH
Confidence 33334455667899999863 34542 3211334999999998754
No 110
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=85.39 E-value=0.19 Score=40.31 Aligned_cols=44 Identities=20% Similarity=0.502 Sum_probs=31.4
Q ss_pred ccccccCC--------ceeeeccCCCCCCCcccCccc--cc---cccC-CcccCcCcH
Q 041905 62 YCHVCGKA--------SKFYCLCCPSAVCKTCLYDAQ--FA---VVKR-NKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~--------~~~~C~~Cp~syh~~Cl~~~~--l~---~i~~-~~w~C~~C~ 105 (191)
+|.+|++. .++.|+.|..=||..|+.-.+ .. .+|. ..|+|+.|.
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~ 61 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 61 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCC
Confidence 56677653 168999999999999998432 11 1232 479999997
No 111
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=84.60 E-value=0.13 Score=46.69 Aligned_cols=42 Identities=24% Similarity=0.617 Sum_probs=32.6
Q ss_pred cccceecc----cCceEeeCCCCCCCcccccccCccccccCCCCCeeec
Q 041905 15 NWCYVCKD----GGKLRLCDHLRCPKVYHSECVDKDESFLVAETKWTCN 59 (191)
Q Consensus 15 d~C~vC~d----gGeLi~Cd~~~CpkayH~~Cl~~~~~~~~~~g~W~Cp 59 (191)
-+| +|+. +|.+|.|| .|..=||..|++.........+.|+||
T Consensus 6 ~yC-iC~~~~d~~~~MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~ 51 (447)
T 3kv4_A 6 VYC-LCRLPYDVTRFMIECD--MCQDWFHGSCVGVEEEKAADIDLYHCP 51 (447)
T ss_dssp EET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTEEECCCH
T ss_pred eEE-eCCCcCCCCCCeEEcC--CCCcccccccCCcCcccccCCCEEECC
Confidence 345 5765 58899999 999999999999987542234789997
No 112
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=83.82 E-value=0.32 Score=31.59 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=30.8
Q ss_pred CCCccccccccccccccceecc---cCceEeeCCCCCCCcccccccCccc
Q 041905 1 MPRKKRLTKEEISENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 1 ~~~~~~~~~~~~~ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
|........+...+..|.||.+ .++.+.-- .|.-.||..|+..-.
T Consensus 1 m~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 1 MKQDGEEGTEEDTEEKCTICLSILEEGEDVRRL--PCMHLFHQVCVDQWL 48 (69)
T ss_dssp CCCCSTTCCSTTCCCSBTTTTBCCCSSSCEEEC--TTSCEEEHHHHHHHH
T ss_pred CCCcccCcCcCCCCCCCeeCCccccCCCcEEEe--CCCCHHHHHHHHHHH
Confidence 4444444555667788999965 34444455 788999999998654
No 113
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=82.04 E-value=0.2 Score=45.81 Aligned_cols=37 Identities=19% Similarity=0.353 Sum_probs=28.1
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHHH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLEL 107 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~ 107 (191)
++.|+.|..=||..|+.-..-.....+.|+|+.|...
T Consensus 52 MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 52 MIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp EEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred eEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 7999999999999999843211112368999999854
No 114
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=77.86 E-value=1.5 Score=35.08 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=22.5
Q ss_pred cccceecccCc----eEeeCCCCCCCcccccccCccccc
Q 041905 15 NWCYVCKDGGK----LRLCDHLRCPKVYHSECVDKDESF 49 (191)
Q Consensus 15 d~C~vC~dgGe----Li~Cd~~~CpkayH~~Cl~~~~~~ 49 (191)
.+|. |+..|+ .|.|+ .|-+-||.+|+......
T Consensus 6 ~yCY-CG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~ 41 (177)
T 3rsn_A 6 GSVD-EENGRQLGEVELQCG--ICTKWFTADTFGIDTSS 41 (177)
T ss_dssp ------CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTT
T ss_pred eEEE-cCCCCCCCceeEeec--cccceecHHHhcccccC
Confidence 3565 787775 78899 99999999999866543
No 115
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=77.00 E-value=0.84 Score=42.24 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=27.6
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHHH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLEL 107 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~ 107 (191)
.+.|+.|..=||..|+.-.+-..-..+.|+|+.|...
T Consensus 58 mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 58 WIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp EEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred EEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 3569999999999999943322223478999999854
No 116
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=73.72 E-value=0.87 Score=32.97 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=26.2
Q ss_pred eEeeCCCCCCCcccccccCcccc------ccCCCCCeeecCcc
Q 041905 26 LRLCDHLRCPKVYHSECVDKDES------FLVAETKWTCNWHY 62 (191)
Q Consensus 26 Li~Cd~~~CpkayH~~Cl~~~~~------~~~~~g~W~Cp~h~ 62 (191)
+|.|| .|-.-||..|++.+.+ .++....|.||.+.
T Consensus 2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~ 42 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 42 (140)
T ss_dssp CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCT
T ss_pred ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCcccc
Confidence 68899 9999999999998752 22335578887543
No 117
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=72.60 E-value=0.67 Score=30.19 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=25.3
Q ss_pred ccccccccceecccC--ce-EeeCCCCCCCcccccccCccc
Q 041905 10 EEISENWCYVCKDGG--KL-RLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 10 ~~~~ed~C~vC~dgG--eL-i~Cd~~~CpkayH~~Cl~~~~ 47 (191)
++..++.|.||.+++ +| .-|.-++.-+.+|..||..=.
T Consensus 2 e~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~ 42 (60)
T 1vyx_A 2 EDEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWL 42 (60)
T ss_dssp TTCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHH
T ss_pred CCCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHH
Confidence 355678899998643 23 334322555699999998754
No 118
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=70.43 E-value=0.46 Score=43.09 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=27.4
Q ss_pred eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 71 KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 71 ~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
++.|+.|..=||..|+.-..-.....+.|+|+.|..
T Consensus 20 MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~ 55 (447)
T 3kv4_A 20 MIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55 (447)
T ss_dssp EEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHH
T ss_pred eEEcCCCCcccccccCCcCcccccCCCEEECCCCcc
Confidence 799999999999999994321111237899999974
No 119
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.43 E-value=0.67 Score=31.48 Aligned_cols=35 Identities=14% Similarity=0.466 Sum_probs=23.6
Q ss_pred cccccccceeccc--------------Cc-eEeeCCCCCCCcccccccCccc
Q 041905 11 EISENWCYVCKDG--------------GK-LRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 11 ~~~ed~C~vC~dg--------------Ge-Li~Cd~~~CpkayH~~Cl~~~~ 47 (191)
+..++.|.||.+. ++ ++.-- .|.-+||..|+..=+
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~FH~~Ci~~Wl 61 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWG--ECNHSFHNCCMSLWV 61 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE--TTSCEEEHHHHHHHT
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeC--CCCCccChHHHHHHH
Confidence 4567778888763 22 22222 588999999998754
No 120
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=69.84 E-value=1.7 Score=30.54 Aligned_cols=35 Identities=23% Similarity=0.653 Sum_probs=27.0
Q ss_pred CCCCCeeecCcccccccC---Cceeeecc--CCCCCCCcccCc
Q 041905 51 VAETKWTCNWHYCHVCGK---ASKFYCLC--CPSAVCKTCLYD 88 (191)
Q Consensus 51 ~~~g~W~Cp~h~C~~C~~---~~~~~C~~--Cp~syh~~Cl~~ 88 (191)
+|...|. -.|.+|+. ++-+.|.. |..+||..|-..
T Consensus 11 Ip~~R~~---l~C~iC~~~~~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 11 IPPARWK---LTCYLCKQKGVGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCC---CCBTTTTBCCSSCEEECSCTTTCCEEEHHHHHH
T ss_pred CChHHhc---CCCcCCCCCCCcEeEecCCCCCCCcCcHHHHHH
Confidence 4667784 47899975 34688975 999999999764
No 121
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=66.28 E-value=0.6 Score=33.63 Aligned_cols=33 Identities=30% Similarity=0.744 Sum_probs=23.9
Q ss_pred cccccceeccc-------CceEeeCCCCCCCcccccccCccc
Q 041905 13 SENWCYVCKDG-------GKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 13 ~ed~C~vC~dg-------GeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
++..|.||.+. |+.+.-- .|.-+||..|+..-+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~ 45 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSL 45 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE--TTCCEEEHHHHHHHH
T ss_pred CCCCCcccChhhhCccccccCeEec--CCCChhhHHHHHHHH
Confidence 45679999852 4444444 788899999998764
No 122
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=64.49 E-value=2.1 Score=26.08 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=23.6
Q ss_pred ccccccceeccc---Cc-eEeeCCCCCCCcccccccCccc
Q 041905 12 ISENWCYVCKDG---GK-LRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 12 ~~ed~C~vC~dg---Ge-Li~Cd~~~CpkayH~~Cl~~~~ 47 (191)
..+..|.||.+. |+ ++.-. .|.-.||..|+..-.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~ 40 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDMWL 40 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHHTT
T ss_pred CCCCcCccCCccccCCCceEECC--CCCCcccHHHHHHHH
Confidence 346789999864 22 34443 588899999997643
No 123
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.38 E-value=1.6 Score=28.73 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=25.7
Q ss_pred cccccccceecc---cCceEeeCCCCCCCcccccccCccc
Q 041905 11 EISENWCYVCKD---GGKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 11 ~~~ed~C~vC~d---gGeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
...+..|.||.+ .++.+..- .|.-.||..|+..-+
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~w~ 57 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVL--PCNHEFHAKCVDKWL 57 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEE--TTTEEEETTHHHHHH
T ss_pred cCCCCCCeECCcccCCCCeEEEE--CCCCHhHHHHHHHHH
Confidence 345678999995 35555555 688899999998754
No 124
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.46 E-value=2.4 Score=28.88 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=25.6
Q ss_pred ccccccceecccC-ceEeeCCCCCCCcccccccCccc
Q 041905 12 ISENWCYVCKDGG-KLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 12 ~~ed~C~vC~dgG-eLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
+..+.|.||.+-- .-+.|. .|..+||..|+..=+
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl 47 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYF 47 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHS
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHHHH
Confidence 3457899999731 225788 999999999998644
No 125
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=59.21 E-value=2.6 Score=34.74 Aligned_cols=43 Identities=19% Similarity=0.470 Sum_probs=31.9
Q ss_pred CcccccccCCc--eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 60 WHYCHVCGKAS--KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 60 ~h~C~~C~~~~--~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
...|.+|+.-- -..|..|...||.+|+.. -+. ..+.-.||.|.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~-~~~--~~~~~~CP~C~ 224 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAK-YFQ--SNAEPRCPHCN 224 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHH-HTT--TCSSCBCTTTC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHH-HHH--hCCCCCCCCCC
Confidence 45799999865 388999999999999982 222 23455799885
No 126
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=54.35 E-value=8.7 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=18.4
Q ss_pred eeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 72 FYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 72 ~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
+.|..|..-|-..=-...+|..+|. .|.||.|.
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~-dw~CP~Cg 37 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPD-DWCCPVCG 37 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCT-TCBCTTTC
T ss_pred EECCCCCeEEeCCcCCCcchhhCCC-CCcCcCCC
Confidence 4566666555432111134666644 49999995
No 127
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=54.20 E-value=1.5 Score=34.72 Aligned_cols=36 Identities=3% Similarity=-0.013 Sum_probs=27.0
Q ss_pred ccccC----CcceeEEeeecc-CCC-hhhHHHHHhhhhCCCC
Q 041905 131 TTDYF----FNGYWQTIKQKE-GLT-SKNVILAYDLSKKGEM 166 (191)
Q Consensus 131 ~~E~~----~~~YW~~~k~k~-~l~-~~~~~~a~~~~r~~~~ 166 (191)
..||| +.||||+.|+.+ .|. ...+...+||+|+..+
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~~~glkKl~nf~kk~~~ 87 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFII 87 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCSCTTHHHHHHHHHHHTH
T ss_pred ceEEEEEECCCccccCeecCHHHHhhchHHHHHHHHHHHhhh
Confidence 48999 899999999884 555 3445557788888764
No 128
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=52.74 E-value=6.1 Score=22.50 Aligned_cols=8 Identities=38% Similarity=0.883 Sum_probs=6.5
Q ss_pred CCCeeecC
Q 041905 53 ETKWTCNW 60 (191)
Q Consensus 53 ~g~W~Cp~ 60 (191)
.|+|.|+.
T Consensus 3 ~gDW~C~~ 10 (32)
T 2lk0_A 3 FEDWLCNK 10 (32)
T ss_dssp CSEEECTT
T ss_pred CCCCCcCc
Confidence 58999984
No 129
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=51.87 E-value=3.2 Score=29.94 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=23.2
Q ss_pred ccccccceecccCc------------------eEeeCCCCCCCcccccccCccc
Q 041905 12 ISENWCYVCKDGGK------------------LRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 12 ~~ed~C~vC~dgGe------------------Li~Cd~~~CpkayH~~Cl~~~~ 47 (191)
..++.|.||.+.=+ .+.-- .|.-+||..|+..=+
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~--~C~H~FH~~Ci~~Wl 86 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWG--VCNHAFHFHCISRWL 86 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE--TTSCEEEHHHHHHHH
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeec--ccCcEECHHHHHHHH
Confidence 45788999975311 12223 688999999998754
No 130
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=51.08 E-value=3.5 Score=30.45 Aligned_cols=37 Identities=19% Similarity=0.471 Sum_probs=2.1
Q ss_pred cccccccceecccCc--eEeeCC--------------CCCCCcccccccCccc
Q 041905 11 EISENWCYVCKDGGK--LRLCDH--------------LRCPKVYHSECVDKDE 47 (191)
Q Consensus 11 ~~~ed~C~vC~dgGe--Li~Cd~--------------~~CpkayH~~Cl~~~~ 47 (191)
+..++.|.||.+.=+ -+.|.. ..|.-+||..|+..=+
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl 97 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL 97 (117)
T ss_dssp CCCC-------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH
Confidence 345689999986311 111110 1688889999998754
No 131
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=50.51 E-value=7.2 Score=22.34 Aligned_cols=8 Identities=25% Similarity=1.190 Sum_probs=6.6
Q ss_pred CCCCeeec
Q 041905 52 AETKWTCN 59 (191)
Q Consensus 52 ~~g~W~Cp 59 (191)
..|+|.|+
T Consensus 3 ~~gDW~C~ 10 (33)
T 2k1p_A 3 SANDWQCK 10 (33)
T ss_dssp SSSSCBCS
T ss_pred CCCCcccC
Confidence 46899998
No 132
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=50.47 E-value=8.3 Score=35.79 Aligned_cols=73 Identities=25% Similarity=0.525 Sum_probs=25.3
Q ss_pred ccccceeccc--C---ceEeeCCCCCCCcccccccCcccccc------------CCCCCeee----cCcccccccCC--c
Q 041905 14 ENWCYVCKDG--G---KLRLCDHLRCPKVYHSECVDKDESFL------------VAETKWTC----NWHYCHVCGKA--S 70 (191)
Q Consensus 14 ed~C~vC~dg--G---eLi~Cd~~~CpkayH~~Cl~~~~~~~------------~~~g~W~C----p~h~C~~C~~~--~ 70 (191)
-.+|.+|++- | +-+.|. .|.-+.|..|.......- ...-.|.= ...+|..|+.. +
T Consensus 48 p~~C~~C~~~i~g~~~qg~~C~--~C~~~~H~~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~~l~g 125 (674)
T 3pfq_A 48 PTFCSHCTDFIWGFGKQGFQCQ--VCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLYG 125 (674)
T ss_dssp --------------------------------------------------------CCCCCEECCSSCCCCSSSCSCCBB
T ss_pred CCccccccccccccCCceeECC--CCCCCcChhhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCccccccch
Confidence 3679999873 3 567899 999999999987643210 00113331 12488999765 2
Q ss_pred ----eeeeccCCCCCCCcccCc
Q 041905 71 ----KFYCLCCPSAVCKTCLYD 88 (191)
Q Consensus 71 ----~~~C~~Cp~syh~~Cl~~ 88 (191)
-+.|..|...+|..|...
T Consensus 126 ~~~qg~~C~~C~~~~H~~C~~~ 147 (674)
T 3pfq_A 126 LIHQGMKCDTCMMNVHKRCVMN 147 (674)
T ss_dssp SSSCEECCSSSCCCBCSSTTSS
T ss_pred hhcCccccccCCcchhhhhhhc
Confidence 489999999999999873
No 133
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=49.95 E-value=8.9 Score=33.97 Aligned_cols=37 Identities=30% Similarity=0.698 Sum_probs=29.1
Q ss_pred ccccccccceecc----cCce--EeeCCCCCCCcccccccCcc
Q 041905 10 EEISENWCYVCKD----GGKL--RLCDHLRCPKVYHSECVDKD 46 (191)
Q Consensus 10 ~~~~ed~C~vC~d----gGeL--i~Cd~~~CpkayH~~Cl~~~ 46 (191)
+++....|.||-. +|++ ..|+...|...||..||..=
T Consensus 304 ~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kW 346 (381)
T 3k1l_B 304 EDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEW 346 (381)
T ss_dssp CCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHH
T ss_pred cccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHH
Confidence 4556778999985 3555 57988899999999999763
No 134
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=48.35 E-value=6.3 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.533 Sum_probs=24.6
Q ss_pred cccccccCCc---eeeeccCCCCCCCcccCcc
Q 041905 61 HYCHVCGKAS---KFYCLCCPSAVCKTCLYDA 89 (191)
Q Consensus 61 h~C~~C~~~~---~~~C~~Cp~syh~~Cl~~~ 89 (191)
..|..|++.. .+.|..|....|..|...|
T Consensus 48 ~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEGTIWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTTCCCCCHHHHHCS
T ss_pred eEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCC
Confidence 4689998865 5999999999999999844
No 135
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=48.31 E-value=3.3 Score=28.42 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=24.3
Q ss_pred ccccccceeccc---CceEeeCCCCCCCcccccccCccc
Q 041905 12 ISENWCYVCKDG---GKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 12 ~~ed~C~vC~dg---GeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
..+..|.||.+. |+.+.-- .|.-.||..|+..-+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~Fh~~Ci~~wl 74 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATEL--PCHHYFHKPCVSIWL 74 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEE--TTTEEEEHHHHHHHH
T ss_pred CCCCCCcccChhhcCCCcEEec--CCCChHHHHHHHHHH
Confidence 356779999753 4444444 688999999998744
No 136
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=47.83 E-value=7.4 Score=30.06 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=39.9
Q ss_pred CcccccccCC-c-----eeeeccCCCCCCCcccCccccccccCCcccCcCcHHHHHHHhhhccc
Q 041905 60 WHYCHVCGKA-S-----KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLELAWLIETNKDV 117 (191)
Q Consensus 60 ~h~C~~C~~~-~-----~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~~~~iek~~~~ 117 (191)
.+.|..|..+ + -..|..|...+|..|-... .+...|+|..|.+......+.-.|
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~----~~~~~W~C~vC~k~rel~~kSGeW 127 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH----PEEQGWLCDPCHLARVVKIGSLEW 127 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC----SSSSSCEEHHHHHHHHHHHHHCHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccccc----CCCCcEeeHHHHHHHHHHHhccHH
Confidence 4678888876 2 3778888888888887521 256899999999776666666666
No 137
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.41 E-value=7.3 Score=25.42 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=23.5
Q ss_pred cccccccceeccc---CceEeeCCCCCCCcccccccCccc
Q 041905 11 EISENWCYVCKDG---GKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 11 ~~~ed~C~vC~dg---GeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
...+..|.||.+. ++.+.-- .|.-.||..|+..-+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~~~ 49 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQL--PCNHLFHDSCIVPWL 49 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEEC--TTSCEEETTTTHHHH
T ss_pred CCCCCCCeeCCccccCCCCEEEe--CCCCeecHHHHHHHH
Confidence 3456789999753 3333223 578889999998654
No 138
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=42.84 E-value=16 Score=22.39 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=16.1
Q ss_pred CCCCCeeecCcccccccCCceeeeccCC
Q 041905 51 VAETKWTCNWHYCHVCGKASKFYCLCCP 78 (191)
Q Consensus 51 ~~~g~W~Cp~h~C~~C~~~~~~~C~~Cp 78 (191)
...|+|+|+...|..=.=.....|..|.
T Consensus 10 ~~~GDW~C~~~~C~~~Nfa~R~~C~~C~ 37 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNVNFARRTSCDRCG 37 (45)
T ss_dssp SCSSSCBCSSTTTCCBCCSSCSBCSSSC
T ss_pred CCCCCcCCCCCCCCCEEccccccccccC
Confidence 3579999985444433333345555554
No 139
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.84 E-value=5.4 Score=25.79 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=24.4
Q ss_pred ccccccccceeccc---CceEeeCCCCCCCcccccccCccc
Q 041905 10 EEISENWCYVCKDG---GKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 10 ~~~~ed~C~vC~dg---GeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
+...+..|.||.+. ++.+.-- .|.-.||..|+..-+
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~--~C~H~f~~~Ci~~~~ 49 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGIC--PCKHAFHRKCLIKWL 49 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEE--TTTEEEEHHHHHHHH
T ss_pred cCCCCCCCcCCCcccCCCCcEEEc--CCCCEecHHHHHHHH
Confidence 34557789999874 3322222 588889999998644
No 140
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.65 E-value=7 Score=27.96 Aligned_cols=41 Identities=22% Similarity=0.666 Sum_probs=34.4
Q ss_pred cccccccCC--------ceeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 61 HYCHVCGKA--------SKFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 61 h~C~~C~~~--------~~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.+|.+|++. -...|.-|....|..|+. .+..+++-.|++|.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE----YErkeG~q~CpqCk 65 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE----YERREGTQNCPQCK 65 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH----HHHHTSCSSCTTTC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHH----HHHhccCccccccC
Confidence 478999986 258899999999999988 45678888999996
No 141
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=41.53 E-value=10 Score=22.73 Aligned_cols=34 Identities=15% Similarity=0.370 Sum_probs=25.1
Q ss_pred ccccccceeccc----CceEeeCCCCCCCcccccccCccc
Q 041905 12 ISENWCYVCKDG----GKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 12 ~~ed~C~vC~dg----GeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
..+..|.||.+. ++.+.-- .|.-+||..|+..-.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~ 40 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVL--PCGHLLHRTCYEEML 40 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEEC--TTSCEEETTHHHHHH
T ss_pred CCCCcCcccChhhcCCCcCeEec--CCCCcccHHHHHHHH
Confidence 346789999863 3445555 788899999998654
No 142
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=41.40 E-value=11 Score=28.37 Aligned_cols=56 Identities=21% Similarity=0.456 Sum_probs=37.5
Q ss_pred cccccccCCc------eeeeccCCCCCCCcccCccccccccCCcccCcCcHHHHHHHhhhccc
Q 041905 61 HYCHVCGKAS------KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLELAWLIETNKDV 117 (191)
Q Consensus 61 h~C~~C~~~~------~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~~~~~iek~~~~ 117 (191)
+.|..|.++- -..|..|...+|..|-..... .-....|+|.-|.+.....-+.-.|
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-~~~~~~W~C~vC~k~rel~~kSG~W 117 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-NRPHPVWLCKICLEQREVWKRSGAW 117 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-SSSSCCEEEHHHHHHHHHHHHTSHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCC-CCCccceechhhHHHHHHHHhhhHH
Confidence 4566666542 356777777788877763211 1245689999999877777666666
No 143
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.02 E-value=17 Score=24.14 Aligned_cols=53 Identities=23% Similarity=0.547 Sum_probs=33.6
Q ss_pred eeecCcccccccCCc-----eeeeccCCCCCCCcccCcc-cccccc--CCcccCcCcHHHHH
Q 041905 56 WTCNWHYCHVCGKAS-----KFYCLCCPSAVCKTCLYDA-QFAVVK--RNKGFCNSCLELAW 109 (191)
Q Consensus 56 W~Cp~h~C~~C~~~~-----~~~C~~Cp~syh~~Cl~~~-~l~~i~--~~~w~C~~C~~~~~ 109 (191)
|. |...|..|+..= ...|..|+..|+..|.... +++... ...-.|..|.....
T Consensus 8 W~-~~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 68 (73)
T 1vfy_A 8 WI-DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE 68 (73)
T ss_dssp CC-CCSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred Cc-cCCcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHH
Confidence 44 445788888752 4889999999999998732 222211 12356777765433
No 144
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=38.25 E-value=17 Score=28.84 Aligned_cols=41 Identities=12% Similarity=0.154 Sum_probs=26.3
Q ss_pred ccCCc-----eeeeccCCCCCCCcccCccccccccCC---cccCcCcHH
Q 041905 66 CGKAS-----KFYCLCCPSAVCKTCLYDAQFAVVKRN---KGFCNSCLE 106 (191)
Q Consensus 66 C~~~~-----~~~C~~Cp~syh~~Cl~~~~l~~i~~~---~w~C~~C~~ 106 (191)
|++.+ .+.|..|-+-||..|+.-..-.-+|.. ...|..|.+
T Consensus 10 CG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~ 58 (177)
T 3rsn_A 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHH 58 (177)
T ss_dssp -CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTST
T ss_pred cCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCC
Confidence 56554 599999999999999983321112322 234888863
No 145
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.79 E-value=31 Score=21.09 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=18.1
Q ss_pred ccccccccceecccCceEeeCCCCCCCcccccccCc
Q 041905 10 EEISENWCYVCKDGGKLRLCDHLRCPKVYHSECVDK 45 (191)
Q Consensus 10 ~~~~ed~C~vC~dgGeLi~Cd~~~CpkayH~~Cl~~ 45 (191)
++..+..|.||.+.=.-..-- .|.-+|+..|+..
T Consensus 2 ee~~~~~C~IC~~~~~~p~~l--~CgH~fC~~Ci~~ 35 (56)
T 1bor_A 2 EEFQFLRCQQCQAEAKCPKLL--PCLHTLCSGCLEA 35 (56)
T ss_dssp CSCCCSSCSSSCSSCBCCSCS--TTSCCSBTTTCSS
T ss_pred CcccCCCceEeCCccCCeEEc--CCCCcccHHHHcc
Confidence 344566788887632111111 4555666667654
No 146
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=37.33 E-value=8.8 Score=26.76 Aligned_cols=27 Identities=33% Similarity=0.812 Sum_probs=23.4
Q ss_pred cccccccCC-------ceeeeccCCCCCCCcccC
Q 041905 61 HYCHVCGKA-------SKFYCLCCPSAVCKTCLY 87 (191)
Q Consensus 61 h~C~~C~~~-------~~~~C~~Cp~syh~~Cl~ 87 (191)
.+|.+|++. .-++|..|...+|..|..
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~ 72 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKE 72 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHH
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHH
Confidence 589999886 248999999999999987
No 147
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=35.87 E-value=31 Score=23.44 Aligned_cols=28 Identities=18% Similarity=0.436 Sum_probs=18.6
Q ss_pred ccccceeccc----CceEeeCCCCCCCcccccccCc
Q 041905 14 ENWCYVCKDG----GKLRLCDHLRCPKVYHSECVDK 45 (191)
Q Consensus 14 ed~C~vC~dg----GeLi~Cd~~~CpkayH~~Cl~~ 45 (191)
...|..|+.. +++|.-. .+.||..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C 36 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYK----NRFWHDTCFRC 36 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEET----TEEEETTTCCC
T ss_pred CCcCcccCCcccCCceEEEEC----ccChhhcCCcc
Confidence 4568888862 5666554 57888877653
No 148
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=35.62 E-value=7.5 Score=24.68 Aligned_cols=35 Identities=29% Similarity=0.680 Sum_probs=25.9
Q ss_pred cccccccceeccc-------CceEeeCCCCCCCcccccccCccc
Q 041905 11 EISENWCYVCKDG-------GKLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 11 ~~~ed~C~vC~dg-------GeLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
...+..|.||.+. ++.+.-- .|.-+||..|+..-.
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~ 48 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSL 48 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC--TTSCEEEHHHHHHHH
T ss_pred CCCCCCCcccChhhhccccccCCeEeC--CCCChHhHHHHHHHH
Confidence 3456789999863 4555555 788999999998654
No 149
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=35.00 E-value=23 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.627 Sum_probs=18.6
Q ss_pred CCCCeeecCcccccccCCceeeeccCCC
Q 041905 52 AETKWTCNWHYCHVCGKASKFYCLCCPS 79 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~~~~~C~~Cp~ 79 (191)
+...|.|+. |..-....+..|+.|..
T Consensus 5 ~~~~W~C~~--CT~~N~~~~~~Ce~C~~ 30 (34)
T 3a9j_C 5 MGAQWNCTA--CTFLNHPALIRCEQCEM 30 (34)
T ss_dssp CCCCEECTT--TCCEECTTCSBCTTTCC
T ss_pred CCCcCCCCC--CccccCCCCCeeCCCCC
Confidence 456899984 55555677788888864
No 150
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=33.68 E-value=23 Score=20.40 Aligned_cols=26 Identities=27% Similarity=0.824 Sum_probs=16.7
Q ss_pred CCCCeeecCcccccccCCceeeeccCCC
Q 041905 52 AETKWTCNWHYCHVCGKASKFYCLCCPS 79 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~~~~~C~~Cp~ 79 (191)
..+.|.|+ .|.+=+..+.+.|..|..
T Consensus 4 ~~g~W~C~--~C~~~N~~~~~kC~aC~t 29 (33)
T 3gj3_B 4 GSGTWDCD--TCLVQNKPEAVKCVACET 29 (33)
T ss_dssp --CCEECT--TTCCEECTTCSBCTTTCC
T ss_pred CCCceeCC--cccCCCccccCEEcccCC
Confidence 46899997 455555666777777753
No 151
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=32.91 E-value=11 Score=29.86 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=29.2
Q ss_pred CccccC----CcceeEEeeecc-CCC---hhhHHHHHhhhhCCCCC
Q 041905 130 KTTDYF----FNGYWQTIKQKE-GLT---SKNVILAYDLSKKGEMH 167 (191)
Q Consensus 130 ~~~E~~----~~~YW~~~k~k~-~l~---~~~~~~a~~~~r~~~~~ 167 (191)
...||| +.||+|+.|..+ .|. +..+.+.+||+++.++.
T Consensus 56 ~~~eYlVKWkg~s~~h~tWe~~~~L~~~~~~~~~kl~nf~kk~~~~ 101 (187)
T 2b2y_A 56 GEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQET 101 (187)
T ss_dssp CEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHHHHHH
T ss_pred CcEEEEEEECCCCcccCeeCCHHHhCccchhhHHHHHHHHHhhhcc
Confidence 357888 899999999874 443 55678899999887643
No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=32.07 E-value=14 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.970 Sum_probs=13.6
Q ss_pred cccccCCceeeeccCC
Q 041905 63 CHVCGKASKFYCLCCP 78 (191)
Q Consensus 63 C~~C~~~~~~~C~~Cp 78 (191)
|.+|.+.+.++|.-|.
T Consensus 11 C~ICneDAtlrC~gCd 26 (67)
T 2d8v_A 11 CCICNEDATLRCAGCD 26 (67)
T ss_dssp CTTTCSCCCEEETTTT
T ss_pred eEEeCCCCeEEecCCC
Confidence 6789999999999883
No 153
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=29.60 E-value=38 Score=21.60 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=18.9
Q ss_pred eeeccCCCCCCCccc-------CccccccccCCcccCcCcH
Q 041905 72 FYCLCCPSAVCKTCL-------YDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 72 ~~C~~Cp~syh~~Cl-------~~~~l~~i~~~~w~C~~C~ 105 (191)
+.|..|..-|-..=- ...+|..+| ..|.||.|.
T Consensus 4 y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP-~dw~CP~Cg 43 (54)
T 4rxn_A 4 YTCTVCGYIYDPEDGDPDDGVNPGTDFKDIP-DDWVCPLCG 43 (54)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTC
T ss_pred eECCCCCeEECCCcCCcccCcCCCCChhHCC-CCCcCcCCC
Confidence 456666655543211 113455654 569999995
No 154
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.04 E-value=40 Score=21.25 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=21.0
Q ss_pred CCCCCeeecCcccccccCCceeeeccCCCCCC
Q 041905 51 VAETKWTCNWHYCHVCGKASKFYCLCCPSAVC 82 (191)
Q Consensus 51 ~~~g~W~Cp~h~C~~C~~~~~~~C~~Cp~syh 82 (191)
.+.+.|.|+ .|..=.......|+.|...-+
T Consensus 7 ~~~~~W~C~--~CT~~N~~~~~~C~~C~~pr~ 36 (53)
T 2d9g_A 7 GDEGYWDCS--VCTFRNSAEAFKCMMCDVRKG 36 (53)
T ss_dssp SCCCCEECS--SSCCEECSSCSSCSSSCCCCC
T ss_pred CCCCCcCCC--CCccCCCCCCCccCCCCCcCC
Confidence 456789997 445555667788888876544
No 155
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=28.61 E-value=22 Score=31.46 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=23.2
Q ss_pred eeeec--cCCCCCCCcccCccccccccC-------CcccCcCcH
Q 041905 71 KFYCL--CCPSAVCKTCLYDAQFAVVKR-------NKGFCNSCL 105 (191)
Q Consensus 71 ~~~C~--~Cp~syh~~Cl~~~~l~~i~~-------~~w~C~~C~ 105 (191)
...|. +|...||..||. .=|.+.+. -.+.||.|.
T Consensus 326 dk~C~n~~C~h~FH~~CL~-kWLrs~~~sRqSFnvi~G~CPyCr 368 (381)
T 3k1l_B 326 LVSCDNAKCVLKCHAVCLE-EWFKTLMDGKTFLEVSFGQCPFCK 368 (381)
T ss_dssp CBCCSCTTCCCCBCSGGGH-HHHHHHHSSSCTTTCCEEECTTTC
T ss_pred cccccCCccCCccchHHHH-HHHHhCCCccccccccCCCCCCCC
Confidence 35687 899999999998 22332222 246699986
No 156
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=28.39 E-value=14 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.465 Sum_probs=22.2
Q ss_pred cccccceeccc---C---------------ceEeeCCCCCCCcccccccCccc
Q 041905 13 SENWCYVCKDG---G---------------KLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 13 ~ed~C~vC~dg---G---------------eLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
.++.|.||.+. + .++.-- .|.-+||..||..-+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLT--KCSHAFHLLCLLAMY 74 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEES--SSCCEECHHHHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecC--CCCCcccHHHHHHHH
Confidence 45789999763 1 122233 678899999998644
No 157
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.37 E-value=23 Score=19.64 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=17.2
Q ss_pred cccceeccc---CceEeeCCCCCCCccccccc
Q 041905 15 NWCYVCKDG---GKLRLCDHLRCPKVYHSECV 43 (191)
Q Consensus 15 d~C~vC~dg---GeLi~Cd~~~CpkayH~~Cl 43 (191)
+.|..|+.. .|-+..+ .+.||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~----g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCL----DKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSS----SSCCCGGGC
T ss_pred CcCCccCCEEecceeEEEC----CeEecccCC
Confidence 467788763 5666666 478888774
No 158
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=28.28 E-value=32 Score=19.90 Aligned_cols=26 Identities=35% Similarity=0.847 Sum_probs=17.2
Q ss_pred CCCCeeecCcccccccCCceeeeccCCC
Q 041905 52 AETKWTCNWHYCHVCGKASKFYCLCCPS 79 (191)
Q Consensus 52 ~~g~W~Cp~h~C~~C~~~~~~~C~~Cp~ 79 (191)
..|.|.|+ .|.+=...+.+.|..|..
T Consensus 4 ~~G~W~C~--~C~v~N~~~~~kC~aCet 29 (34)
T 3gj5_B 4 GSGSWDCE--VCLVQNKADSTKCIACES 29 (34)
T ss_dssp --CCEECT--TTCCEECSSCSBCTTTCC
T ss_pred CCCceECC--eeEeECccccCEEcccCC
Confidence 57899995 566656666777777754
No 159
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=28.10 E-value=10 Score=26.34 Aligned_cols=40 Identities=20% Similarity=0.648 Sum_probs=25.0
Q ss_pred ccccccCCc--eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS--KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~--~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|...- -..+..|.-.||..|+.. -+. .....||.|.
T Consensus 24 ~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~-~~~---~~~~~CP~Cr 65 (100)
T 3lrq_A 24 RCFICMEKLRDARLCPHCSKLCCFSCIRR-WLT---EQRAQCPHCR 65 (100)
T ss_dssp BCTTTCSBCSSEEECTTTCCEEEHHHHHH-HHH---HTCSBCTTTC
T ss_pred CCccCCccccCccccCCCCChhhHHHHHH-HHH---HCcCCCCCCC
Confidence 466776643 355578888889888872 121 1125688885
No 160
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=27.99 E-value=38 Score=18.60 Aligned_cols=25 Identities=20% Similarity=0.652 Sum_probs=16.4
Q ss_pred CCCeeecCcccccccCCceeeeccCCC
Q 041905 53 ETKWTCNWHYCHVCGKASKFYCLCCPS 79 (191)
Q Consensus 53 ~g~W~Cp~h~C~~C~~~~~~~C~~Cp~ 79 (191)
...|.||. |..-.......|..|..
T Consensus 4 ~~~W~C~~--CTf~N~~~~~~Ce~C~~ 28 (31)
T 1nj3_A 4 SAMWACQH--CTFMNQPGTGHCEMCSL 28 (31)
T ss_dssp SCCEECSS--SCCEECSSCSSCSSSCC
T ss_pred CccccCCc--ccccCCCCCCccCCcCC
Confidence 45799984 55455666677777754
No 161
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=27.75 E-value=14 Score=27.74 Aligned_cols=40 Identities=18% Similarity=0.561 Sum_probs=26.8
Q ss_pred ccccccCCc--eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS--KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~--~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|...- -.....|.-.||..|+.. - +..+...||.|.
T Consensus 56 ~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~-~---~~~~~~~CP~Cr 97 (165)
T 2ckl_B 56 MCPICLDMLKNTMTTKECLHRFCADCIIT-A---LRSGNKECPTCR 97 (165)
T ss_dssp BCTTTSSBCSSEEEETTTCCEEEHHHHHH-H---HHTTCCBCTTTC
T ss_pred CCcccChHhhCcCEeCCCCChhHHHHHHH-H---HHhCcCCCCCCC
Confidence 567776643 234458999999999982 2 223456799986
No 162
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=25.13 E-value=27 Score=24.41 Aligned_cols=40 Identities=23% Similarity=0.585 Sum_probs=24.8
Q ss_pred ccccccCCc-eeeeccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 62 YCHVCGKAS-KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 62 ~C~~C~~~~-~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
.|.+|...- ...-..|.-.||..|+.. -+ ..+...||.|.
T Consensus 17 ~C~iC~~~~~~p~~~~CgH~fC~~Ci~~-~~---~~~~~~CP~Cr 57 (115)
T 3l11_A 17 QCGICMEILVEPVTLPCNHTLCKPCFQS-TV---EKASLCCPFCR 57 (115)
T ss_dssp BCTTTCSBCSSCEECTTSCEECHHHHCC-CC---CTTTSBCTTTC
T ss_pred CCccCCcccCceeEcCCCCHHhHHHHHH-HH---hHCcCCCCCCC
Confidence 345665442 111127899999999983 22 23457899997
No 163
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.48 E-value=29 Score=22.41 Aligned_cols=26 Identities=27% Similarity=0.811 Sum_probs=20.3
Q ss_pred ecCcccccccCCceeeeccCCCCCCC
Q 041905 58 CNWHYCHVCGKASKFYCLCCPSAVCK 83 (191)
Q Consensus 58 Cp~h~C~~C~~~~~~~C~~Cp~syh~ 83 (191)
.+..+|.+|+..+.+.|-.|..-||-
T Consensus 10 ~~~~~C~vC~~~~kY~CPrC~~~yCS 35 (56)
T 2yqq_A 10 CSTVVCVICLEKPKYRCPACRVPYCS 35 (56)
T ss_dssp CCCCCCTTTCSCCSEECTTTCCEESS
T ss_pred CCCCccCcCcCCCeeeCCCCCCCeeC
Confidence 44557899999778999999877763
No 164
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.30 E-value=18 Score=23.89 Aligned_cols=44 Identities=23% Similarity=0.593 Sum_probs=30.8
Q ss_pred ccccccCCc-----eeeeccCCCCCCCcccCccccccccCCcccCcCcHH
Q 041905 62 YCHVCGKAS-----KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSCLE 106 (191)
Q Consensus 62 ~C~~C~~~~-----~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~~ 106 (191)
+|.+|.++. --.|..|..-++..|-...++.+ ..-.|.|..|.+
T Consensus 11 ~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~-~k~~WvC~lC~k 59 (62)
T 2a20_A 11 TCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRS-NKVMWVCNLCRK 59 (62)
T ss_dssp CCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESST-TCEEEEEHHHHH
T ss_pred hhhhhccceeccCCCccccccCCeeecccCCEeeecC-CeEEEEehhhhh
Confidence 678888764 37788899889988877333211 235799988864
No 165
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=22.70 E-value=53 Score=19.74 Aligned_cols=28 Identities=25% Similarity=0.730 Sum_probs=21.9
Q ss_pred ccccccCC--ceeeeccCCCCCCCcccCcc
Q 041905 62 YCHVCGKA--SKFYCLCCPSAVCKTCLYDA 89 (191)
Q Consensus 62 ~C~~C~~~--~~~~C~~Cp~syh~~Cl~~~ 89 (191)
+|..|++. .-+.|..|....|..|+...
T Consensus 16 ~C~~C~~~l~qG~~C~~C~~~~H~~C~~~v 45 (52)
T 1faq_A 16 FCDICQKFLLNGFRCQTCGYKFHEHCSTKV 45 (52)
T ss_dssp ECTTSSSEECSEEECTTTTCCBCSTTSSSS
T ss_pred CCCCcccccccCCEeCCCCCeEChhHHhhC
Confidence 56777653 24899999999999999843
No 166
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.38 E-value=45 Score=23.30 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=22.7
Q ss_pred eeeeccCC-CCCCCcccCccccccccCCcccCcCcH
Q 041905 71 KFYCLCCP-SAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 71 ~~~C~~Cp-~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
++.|..|. ..-|..|... . -....|.|..|.
T Consensus 46 L~lC~~Cgs~gtH~~Cs~l---~-~~~~~weC~~C~ 77 (85)
T 1weq_A 46 LILCATCGSHGTHRDCSSL---R-PNSKKWECNECL 77 (85)
T ss_dssp CEECSSSCCCEECSGGGTC---C-TTCSCCCCTTTS
T ss_pred EEeCcccCCchhHHHHhCC---c-CCCCCEECCcCc
Confidence 56677776 5689999882 1 246789999996
No 167
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.50 E-value=20 Score=22.20 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=21.0
Q ss_pred ccccccCCc---eeeeccCCCCCCCcccCccccccccCCcccCcCc
Q 041905 62 YCHVCGKAS---KFYCLCCPSAVCKTCLYDAQFAVVKRNKGFCNSC 104 (191)
Q Consensus 62 ~C~~C~~~~---~~~C~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C 104 (191)
.|.+|...- ... .|.-.||..|+.. -+.. ..+...||.|
T Consensus 22 ~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~-~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 22 ICPICLDILQKPVTI--DCGHNFCLKCITQ-IGET-SCGFFKCPLC 63 (63)
T ss_dssp BCTTTCSBCSSCEEC--TTSSEECHHHHHH-HHHH-CSSCCCCSCC
T ss_pred CCCcCCchhCCeEEe--CCCCcchHHHHHH-HHHc-CCCCCcCcCC
Confidence 345665542 222 6888888888872 2221 1234456655
No 168
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=21.22 E-value=37 Score=21.09 Aligned_cols=33 Identities=12% Similarity=0.392 Sum_probs=23.2
Q ss_pred cccccceecccC-ceEeeCCCCCCCcccccccCccc
Q 041905 13 SENWCYVCKDGG-KLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 13 ~ed~C~vC~dgG-eLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
.+..|.||.+.- +-+.-- .|.-+||..|+..-.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~--~C~H~fc~~Ci~~~~ 37 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMAL--PCLHAFCYVCITRWI 37 (68)
T ss_dssp CCCCCSSCCSCCCSCEEET--TTTEEESTTHHHHHH
T ss_pred CCCCCeeCCccccCCcEec--CCCCeeHHHHHHHHH
Confidence 467899999853 223344 788889999997643
No 169
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.08 E-value=25 Score=22.41 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=22.7
Q ss_pred cccccccceecccC-ceEeeCCCCCCCcccccccCccc
Q 041905 11 EISENWCYVCKDGG-KLRLCDHLRCPKVYHSECVDKDE 47 (191)
Q Consensus 11 ~~~ed~C~vC~dgG-eLi~Cd~~~CpkayH~~Cl~~~~ 47 (191)
...+..|.||.+.= +.+.- .|.-.||..|+..-.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~---~CgH~fC~~Ci~~~~ 46 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL---PCKHVFCYLCVKGAS 46 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE---TTTEEEEHHHHHHCT
T ss_pred CCCCCCCccCCcccCCCEEc---cCCCHHHHHHHHHHH
Confidence 34567799998742 22222 588889999987643
No 170
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.47 E-value=23 Score=22.17 Aligned_cols=27 Identities=19% Similarity=0.621 Sum_probs=18.5
Q ss_pred ccCCCCCCCcccCccccccccCCcccCcCcH
Q 041905 75 LCCPSAVCKTCLYDAQFAVVKRNKGFCNSCL 105 (191)
Q Consensus 75 ~~Cp~syh~~Cl~~~~l~~i~~~~w~C~~C~ 105 (191)
..|.-.||..|+.. -+ ..+...||.|.
T Consensus 31 ~~CgH~fC~~Ci~~-~~---~~~~~~CP~Cr 57 (66)
T 2ecy_A 31 TECGHRFCESCMAA-LL---SSSSPKCTACQ 57 (66)
T ss_dssp CSSSCCCCHHHHHH-HH---TTSSCCCTTTC
T ss_pred CCCCCHHHHHHHHH-HH---HhCcCCCCCCC
Confidence 47888899999982 22 23455688884
Done!