BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041908
(883 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 175 bits (444), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 183/651 (28%), Positives = 277/651 (42%), Gaps = 24/651 (3%)
Query: 181 LVELNLSWNKLDGSLPQ--CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
L L+LS N L G + L + + L+ L+++SN L +S L SLE L LS N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 239 NFQGSFSLS-VLANH-SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFL 296
+ G+ + VL++ L+ L IS +I + L+ L++ N S IP FL
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIP-FL 219
Query: 297 QYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVIS 356
L+++D+S N L+G F + P + L +L ++
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQ 416
N F G +PD L LD+S N F G++PP G GELP
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLNAP--SLH 473
L L +++S N F G++ +++ L L L+ N F+G + L P +L
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
L + NN +G++P + N S L L +S N L G + L +L R L + N L G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
+ + +L L L N L G IPS L + L + L +N +G IP I
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 594 XXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653
IP +L R + +D++ NL +G+IP+ + + G F+ G
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----FKQSGKIAANFIAG 572
Query: 654 YTLVVEHFPAISAYYNSTLNLI-FSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY---- 708
V + + NL+ F G + +L R+ + Y G
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 709 --MTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNK 766
M LD+S N L+G IP IG + GSIP +L+ + +DLS NK
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 767 LRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCG 817
L G+IP +S L L ++S N+LSGP P QF F + + N LCG
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 123/463 (26%), Positives = 194/463 (41%), Gaps = 83/463 (17%)
Query: 137 LRNLEVLDLSGNGLIGS----------------LTMQGEKLELLNNKCREMNARICELKN 180
L +LEVLDLS N + G+ L + G K+ + R +N ++ +
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS 209
Query: 181 ---------------LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFA 225
L L++S NKL G + +S T L++L+++SNQ G +P
Sbjct: 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---L 266
Query: 226 NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRR 285
L SL+YLSL+ N F G E +F L L+L
Sbjct: 267 PLKSLQYLSLAENKFTG-----------------------EIPDFLSGACDTLTGLDLSG 303
Query: 286 CNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPD 345
+ G +P F L + LS NN +G P L
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM--------------------- 342
Query: 346 SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXX 405
R L L +S N F G LP++ + L+ LD+S N+F G I P++ +
Sbjct: 343 --RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 406 XXXX--XGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLE 463
G++P L+ C L +++S NY G I S+++L L L N G +
Sbjct: 401 LQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 464 EGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523
+ L+ +L L + N L+G++P + N +NL+ + +S N L G++ + L+ IL
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS 566
+S N G + SL L L+ N NG+IP+A+F+ S
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/515 (23%), Positives = 192/515 (37%), Gaps = 106/515 (20%)
Query: 122 NNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQ---GEKLELLNNKCREMNARI--C 176
NN G + L + L+ LD+SGN L G + +L+LLN + I
Sbjct: 210 NNFSTG---IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266
Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLT-YLRVLDLTSNQL-------------------- 215
LK+L L+L+ NK G +P LS L LDL+ N
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 216 ----SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFP 271
SG LP+ + L+ L LS N F G S+ + L L +S P
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 272 WL---PRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT---------- 318
L P+ L+ L L+ +G IP L +L + LS N L+GT P+
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 446
Query: 319 ---WL--------LQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHL---VISNNNFIGML 364
WL + P + +L +SNN G +
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 365 PDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFL--TGCV 422
P G L L L +S NSF G+IP +G G +P +G +
Sbjct: 507 PKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Query: 423 SLAFM-------------------------------------------NVSHNYFGGQIF 439
+ F+ N++ +GG
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 440 PKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVL 499
P + + + +L ++ N +G + + + + P L IL++ +N +SG +P VG+ L++L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
+S N L+G + +S L + +D+S N L GP+
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 156/396 (39%), Gaps = 33/396 (8%)
Query: 422 VSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLNDN--QFTGRLEEGL-LNAPSLHILD 476
SL +++S N G + S + L +L ++ N F G++ GL LN SL +LD
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLD 157
Query: 477 VSNNMLSGQ-LPHWV--GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
+S N +SG + WV L L +S N + GDV V S LD+S N
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG 215
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
+ F S+L HL + N L+G A+ ++L L++ N+F G IPPL +
Sbjct: 216 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS--LQ 272
Query: 594 XXXXXXXXXXXXIPQQLC-HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV- 651
IP L + +D+S N G++P F + N F
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332
Query: 652 ---FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVL-- 706
L + + +N FSGE L ++ G +L
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNE-----FSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 707 ------EYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESM 760
+ L L +N TG+IP + E G+IP S +L + +
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 761 DLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
L N L G+IP EL + L + +NDL+G P
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
+ +L+ L L+LS NKLDG +PQ +S LT L +DL++N LSG +P
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 175 bits (444), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 183/651 (28%), Positives = 277/651 (42%), Gaps = 24/651 (3%)
Query: 181 LVELNLSWNKLDGSLPQ--CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
L L+LS N L G + L + + L+ L+++SN L +S L SLE L LS N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 239 NFQGSFSLS-VLANH-SRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFL 296
+ G+ + VL++ L+ L IS +I + L+ L++ N S IP FL
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIP-FL 216
Query: 297 QYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHLVIS 356
L+++D+S N L+G F + P + L +L ++
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 357 NNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQ 416
N F G +PD L LD+S N F G++PP G GELP
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLNAP--SLH 473
L L +++S N F G++ +++ L L L+ N F+G + L P +L
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
L + NN +G++P + N S L L +S N L G + L +L R L + N L G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
+ + +L L L N L G IPS L + L + L +N +G IP I
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 594 XXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653
IP +L R + +D++ NL +G+IP+ + + G F+ G
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-----FKQSGKIAANFIAG 569
Query: 654 YTLVVEHFPAISAYYNSTLNLI-FSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY---- 708
V + + NL+ F G + +L R+ + Y G
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 709 --MTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNK 766
M LD+S N L+G IP IG + GSIP +L+ + +DLS NK
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 767 LRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCG 817
L G+IP +S L L ++S N+LSGP P QF F + + N LCG
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 136/560 (24%), Positives = 223/560 (39%), Gaps = 85/560 (15%)
Query: 130 PMKVLPNLR--NLEVLDLSGNGLIGS----------------LTMQGEKLELLNNKCREM 171
P KV L+ +LEVLDLS N + G+ L + G K+ + R +
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 172 NARICELKN---------------LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS 216
N ++ + L L++S NKL G + +S T L++L+++SNQ
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 217 GNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRF 276
G +P L SL+YLSL+ N F G + L L +S P+
Sbjct: 258 GPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 314
Query: 277 QLKVLNLRRC-NISGTIP-SFLQYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXX 334
L N SG +P L L+ +DLS N +G P L
Sbjct: 315 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL----------- 363
Query: 335 XXXXXXXXXPDSKRDLLHLVISNNNFIG-MLPDNFGMILPELVYLDMSQNSFEGSIPPSM 393
LL L +S+NNF G +LP+ L L + N F G IPP++
Sbjct: 364 ------------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 394 GYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL 453
G +P L L + + N G+I + M + L L L
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP 513
+ N TG + GL N +L+ + +SNN L+G++P W+G NL +L +S NS G++
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 514 LSNLQVARILDISENKLYGPL---------EFSFNHSSSLWHLFLHNNSLNGSIPSA--- 561
L + + LD++ N G + + + N + ++++ N+ + A
Sbjct: 531 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 562 ----LFQSSQLMTLDLRD------NEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQQLC 611
+S QL L R+ + G+ P + + IP+++
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 612 HLRKIAIVDISYNLLDGSIP 631
+ + I+++ +N + GSIP
Sbjct: 651 SMPYLFILNLGHNDISGSIP 670
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 122/515 (23%), Positives = 192/515 (37%), Gaps = 106/515 (20%)
Query: 122 NNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQ---GEKLELLNNKCREMNARI--C 176
NN G + L + L+ LD+SGN L G + +L+LLN + I
Sbjct: 207 NNFSTG---IPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 263
Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLT-YLRVLDLTSNQL-------------------- 215
LK+L L+L+ NK G +P LS L LDL+ N
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 216 ----SGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFP 271
SG LP+ + L+ L LS N F G S+ + L L +S P
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 272 WL---PRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPT---------- 318
L P+ L+ L L+ +G IP L +L + LS N L+GT P+
Sbjct: 384 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD 443
Query: 319 ---WL--------LQXXXXXXXXXXXXXXXXXXXXXPDSKRDLLHL---VISNNNFIGML 364
WL + P + +L +SNN G +
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 365 PDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFL--TGCV 422
P G L L L +S NSF G+IP +G G +P +G +
Sbjct: 504 PKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 423 SLAFM-------------------------------------------NVSHNYFGGQIF 439
+ F+ N++ +GG
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 440 PKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVL 499
P + + + +L ++ N +G + + + + P L IL++ +N +SG +P VG+ L++L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL 534
+S N L+G + +S L + +D+S N L GP+
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 155/396 (39%), Gaps = 33/396 (8%)
Query: 422 VSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLNDN--QFTGRLEEGL-LNAPSLHILD 476
SL +++S N G + S + L +L ++ N F G++ GL LN SL +LD
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SLEVLD 154
Query: 477 VSNNMLSGQ-LPHWV--GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533
+S N +SG + WV L L +S N + GDV V S LD+S N
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTG 212
Query: 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXX 593
+ F S+L HL + N L+G A+ ++L L++ N+F G IPPL
Sbjct: 213 IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQ 269
Query: 594 XXXXXXXXXXXXIPQQLC-HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFV- 651
IP L + +D+S N G++P F + N F
Sbjct: 270 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 329
Query: 652 ---FGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVL-- 706
L + + +N FSGE L ++ G +L
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNE-----FSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 707 ------EYMTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESM 760
+ L L +N TG+IP + E G+IP S +L + +
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 761 DLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796
L N L G+IP EL + L + +NDL+G P
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 480
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 174 RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
+ +L+ L L+LS NKLDG +PQ +S LT L +DL++N LSG +P
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 111/283 (39%), Gaps = 47/283 (16%)
Query: 233 LSLSGNNFQGSFSL-SVLANHSRLEVLQISRLQ-IETENFPWLPRF-QLKVLNLRRCNIS 289
L LSG N + + S LAN L L I + + P + + QL L + N+S
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 290 GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQXXXXXXXXXXXXXXXXXXXXXPDSKRD 349
G IP FL L +D S+N L+GT P + S +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSI------------------------SSLPN 150
Query: 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXX 409
L+ + N G +PD++G + +S+N G IPP+
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA----------NLNLA 200
Query: 410 XGELPKQFLTGCVSLAF--------MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGR 461
+L + L G S+ F ++++ N + +S L L L +N+ G
Sbjct: 201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-KNLNGLDLRNNRIYGT 259
Query: 462 LEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN 504
L +GL LH L+VS N L G++P GN DV + N
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 94/249 (37%), Gaps = 36/249 (14%)
Query: 576 NEFSGNIPPLINEDSXXXXXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIP---S 632
N G IPP I + + IP L ++ + +D SYN L G++P S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNR-ELRQRVEVK 691
N+ +G+ +G AI Y S L S +R L ++
Sbjct: 147 SLPNLVGITFDGNRISG-------------AIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 692 FMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGY---LQEXXXXXXXXXXXXGSIP 748
F N + +DLS N L G+ G Q+ G +
Sbjct: 194 FANLN------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG 241
Query: 749 RSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESN 808
S K + +DL N++ G +P L++L +L NVS+N+L G P FD S
Sbjct: 242 LS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297
Query: 809 YRGNLNLCG 817
Y N LCG
Sbjct: 298 YANNKCLCG 306
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 51/221 (23%)
Query: 436 GQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWV----- 490
G I P +TQL +LY+ +G + + L +L LD S N LSG LP +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 491 -------------------GNFSNL-DVLLMSRNSLEGDVSVPLSNLQVARILDISENKL 530
G+FS L + +SRN L G + +NL +A +D+S N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209
Query: 531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDS 590
G F + + L NSL + + S L LDLR+N G
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYG---------- 258
Query: 591 XXXXXXXXXXXXXXXIPQQLCHLRKIAIVDISYNLLDGSIP 631
+PQ L L+ + +++S+N L G IP
Sbjct: 259 --------------TLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 72/304 (23%), Positives = 121/304 (39%), Gaps = 76/304 (25%)
Query: 489 WVGNFSNLDVLLMSRNSLE-GDVSVP--------LSNLQVARILDISE-NKLYGPLEFSF 538
W+G + D N+L+ +++P L+NL L I N L GP+ +
Sbjct: 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97
Query: 539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSXXXXXXXX 598
+ L +L++ + +++G+IP L Q L+TLD N SG +PP I+
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 599 XXXXXXXIPQQLCHLRKI-AIVDISYNLLDGSIPSCFTN-------IWPWMEEGDPFNGF 650
IP K+ + IS N L G IP F N + M EGD
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD----- 212
Query: 651 VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR--YESYKGGVLEY 708
+++F + N Q++ +AKN ++ K G+ +
Sbjct: 213 ---------------------ASVLFGSDKN---TQKIH---LAKNSLAFDLGKVGLSKN 245
Query: 709 MTGLDLSSNELTGEIPSAIGYLQEXXXXXXXXXXXXGSIPRSFSNLKMIESMDLSYNKLR 768
+ GLDL +N + G++P+ + LK + S+++S+N L
Sbjct: 246 LNGLDLRNNRI------------------------YGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 769 GQIP 772
G+IP
Sbjct: 282 GEIP 285
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 128/325 (39%), Gaps = 76/325 (23%)
Query: 27 CLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCC--SWERIKCNVTTANYNNN 84
C ++ LL+IK + + + L SW+ T+DCC +W + C+ T Y
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-------TLSSWLP--TTDCCNRTWLGVLCDTDTQTY--- 50
Query: 85 GSLKQLKILNIGFNSFXXXXXXXXXXXXXXXXXXXEGNNLGVGFKPMKVLPNLRNLEVLD 144
++ N+ G NL + L NL L L
Sbjct: 51 ------RVNNLDL----------------------SGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 145 LSG-NGLIGSLTMQGEKLELLN-------NKCREMNARICELKNLVELNLSWNKLDGSLP 196
+ G N L+G + KL L+ N + + ++K LV L+ S+N L G+LP
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 197 QCLSNLTYLRVLDLTSNQLSGNLPIS------------------------VFANLTSLEY 232
+S+L L + N++SG +P S FANL +L +
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAF 201
Query: 233 LSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTI 292
+ LS N +G S+ + + + + +++ + + L L+LR I GT+
Sbjct: 202 VDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL 260
Query: 293 PSFLQYQYDLRYIDLSHNNLAGTFP 317
P L L +++S NNL G P
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 435 GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS 494
G ++ PK + + LYL+ NQFT +E L N L ++D+SNN +S N +
Sbjct: 21 GLKVLPKGIPR-DVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMT 78
Query: 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
L L++S N L L+ R+L + N + E +FN S+L HL + N L
Sbjct: 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
K+L ++LS N++ Q SN+T L L L+ N+L +P F L SL LSL GN
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGN 112
Query: 239 NF----QGSFS-LSVLAN 251
+ +G+F+ LS L++
Sbjct: 113 DISVVPEGAFNDLSALSH 130
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 749 RSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792
+SFSN+ + ++ LSYN+LR P L L + ++ ND+S
Sbjct: 72 QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 272
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 327
Query: 252 HSRL 255
RL
Sbjct: 328 LQRL 331
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 123 NLGVGFKPMKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICE 177
N G +K L NL LE LD+S N ++ LT E L NN+ ++ +
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGI 214
Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
L NL EL+L+ N+L L++LT L LDL +NQ+S P+S LT L L L
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGA 269
Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIE 266
N ++S LA + L L+++ Q+E
Sbjct: 270 NQIS---NISPLAGLTALTNLELNENQLE 295
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 109
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ L+ GN
Sbjct: 110 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNF-GNQVT 163
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 164 ---DLKPLANLTTLERLDIS 180
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 277
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 278 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 332
Query: 252 HSRL 255
RL
Sbjct: 333 LQRL 336
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 125 GVGFKPMKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELK 179
G +K L NL LE LD+S N ++ LT E L NN+ ++ + L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGILT 221
Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
NL EL+L+ N+L L++LT L LDL +NQ+S P+S LT L L L N
Sbjct: 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQ 276
Query: 240 FQGSFSLSVLANHSRLEVLQISRLQIE 266
++S LA + L L+++ Q+E
Sbjct: 277 IS---NISPLAGLTALTNLELNENQLE 300
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 114
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ LS GN
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSF-GNQVT 168
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 169 ---DLKPLANLTTLERLDIS 185
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 328
Query: 252 HSRL 255
RL
Sbjct: 329 LQRL 332
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 131 MKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+K L NL LE LD+S N ++ LT E L NN+ ++ + L NL EL+
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGILTNLDELS 223
Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245
L+ N+L L++LT L LDL +NQ+S P+S LT L L L N +
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS---N 275
Query: 246 LSVLANHSRLEVLQISRLQIE 266
+S LA + L L+++ Q+E
Sbjct: 276 ISPLAGLTALTNLELNENQLE 296
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 109
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ L+ S N
Sbjct: 110 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNFSSNQVT 164
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 165 ---DLKPLANLTTLERLDIS 181
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 328
Query: 252 HSRL 255
RL
Sbjct: 329 LQRL 332
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 131 MKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+K L NL LE LD+S N ++ LT E L NN+ ++ + L NL EL+
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGILTNLDELS 223
Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245
L+ N+L L++LT L LDL +NQ+S P+S LT L L L N +
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS---N 275
Query: 246 LSVLANHSRLEVLQISRLQIE 266
+S LA + L L+++ Q+E
Sbjct: 276 ISPLAGLTALTNLELNENQLE 296
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 109
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ LS S N
Sbjct: 110 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFSSNQVT 164
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 165 ---DLKPLANLTTLERLDIS 181
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 219 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 276
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 277 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 331
Query: 252 HSRL 255
RL
Sbjct: 332 LQRL 335
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 131 MKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+K L NL LE LD+S N ++ LT E L NN+ ++ + L NL EL+
Sbjct: 169 LKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGILTNLDELS 226
Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245
L+ N+L L++LT L LDL +NQ+S P+S LT L L L N +
Sbjct: 227 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS---N 278
Query: 246 LSVLANHSRLEVLQISRLQIE 266
+S LA + L L+++ Q+E
Sbjct: 279 ISPLAGLTALTNLELNENQLE 299
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 55 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 113
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ LS GN
Sbjct: 114 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSF-GNQVT 167
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 168 ---DLKPLANLTTLERLDIS 184
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 273
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 274 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 328
Query: 252 HSRL 255
RL
Sbjct: 329 LQRL 332
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 72/141 (51%), Gaps = 15/141 (10%)
Query: 131 MKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+K L NL LE LD+S N ++ LT E L NN+ ++ + L NL EL+
Sbjct: 166 LKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGILTNLDELS 223
Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245
L+ N+L L++LT L LDL +NQ+S P+S LT L L L N +
Sbjct: 224 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGANQIS---N 275
Query: 246 LSVLANHSRLEVLQISRLQIE 266
+S LA + L L+++ Q+E
Sbjct: 276 ISPLAGLTALTNLELNENQLE 296
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 13/140 (9%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 109
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ LS S N
Sbjct: 110 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFSSNQVT 164
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 165 ---DLKPLANLTTLERLDIS 181
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 137 LRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
L NL+ L L+GN G + SLT + L+L NN+ + A + L L EL L N++
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTD-LDLANNQISNL-APLSGLTKLTELKLGANQI 272
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
P L+ LT L L+L NQL PIS NLT YL+L NN +S L
Sbjct: 273 SNISP--LAGLTALTNLELNENQLEDISPISNLKNLT---YLTLYFNNISDISPVSSLTK 327
Query: 252 HSRL 255
RL
Sbjct: 328 LQRL 331
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 15/149 (10%)
Query: 123 NLGVGFKPMKVLPNLRNLEVLDLSGN-----GLIGSLTMQGEKLELLNNKCREMNARICE 177
N G +K L NL LE LD+S N ++ LT E L NN+ ++ +
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT-NLESLIATNNQISDI-TPLGI 214
Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
L NL EL+L+ N+L L++LT L LDL +NQ+S P+S LT L L L
Sbjct: 215 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLS---GLTKLTELKLGA 269
Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQIE 266
N ++S LA + L L+++ Q+E
Sbjct: 270 NQIS---NISPLAGLTALTNLELNENQLE 295
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQGEKLELL--NNKCREMNARICELKNL 181
+G K + + L NL ++ S N L I L + +++L NN+ ++ + L NL
Sbjct: 51 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TPLANLTNL 109
Query: 182 VELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
L L N++ P L NLT L L+L+SN +S IS + LTSL+ L+ GN
Sbjct: 110 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLNF-GNQVT 163
Query: 242 GSFSLSVLANHSRLEVLQIS 261
L LAN + LE L IS
Sbjct: 164 ---DLKPLANLTTLERLDIS 180
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 11/115 (9%)
Query: 133 VLPNLRNLEVLDLSG-------NGLIGSLTMQGEKLELLNNKCRE--MNARICELKNLVE 183
V +LRNL LD+S NG+ L+ E L++ N +E + EL+NL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFTELRNLTF 474
Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
L+LS +L+ P ++L+ L+VL++ SNQL ++P +F LTSL+ + L N
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTN 528
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 136 NLRNLEVLDLSGNGL----------IGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+L +LE LDLS NGL G+ +++ L+L N M++ L+ L L+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK--YLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 186 LSWNKL----DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
+ L + S+ L NL YL + T +++ N +F L+SLE L ++GN+FQ
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQ 458
Query: 242 GSFSLSVLANHSRLEVLQISRLQIE 266
+F + L L +S+ Q+E
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE 483
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 8/193 (4%)
Query: 372 LPELVYLDMSQN--SFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMNV 429
LP L +LD+S+N SF+G S + + FL G L ++
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFL-GLEQLEHLDF 403
Query: 430 SH-NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQ-L 486
H N F ++S+ L +L ++ T G+ N SL +L ++ N L
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 487 PHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWH 546
P NL L +S+ LE ++L ++L+++ N+L + F+ +SL
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 547 LFLHNNSLNGSIP 559
++LH N + S P
Sbjct: 523 IWLHTNPWDCSCP 535
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 474 ILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSL---EGDVSVPLSNLQVARILDISENK 529
+LD+S+N LS W +NL LL+S N L + VP+ NL R LD+S N
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL---RYLDLSSNH 99
Query: 530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS 579
L+ EF F+ +L L L+NN + +A +QL L L N+ S
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNL 219
L L NK +++A + EL NL L L+ N+L SLP LT L+ L L NQL +L
Sbjct: 68 LALGGNKLHDISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SL 124
Query: 220 PISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPR---- 275
P VF LT+L YL+L+ N Q S V + L L +S Q+++ LP
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-----LPEGVFD 178
Query: 276 --FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFP 317
QLK L L + + L+YI L N T P
Sbjct: 179 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWV-GNFSNLDVL 499
+ +T L L L +NQ L +G+ + +L L++++N L LP V +NL L
Sbjct: 105 FDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTEL 162
Query: 500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIP 559
+S N L+ L + L + +N+L + F+ +SL +++LH+N + + P
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Query: 560 SALFQS 565
+ S
Sbjct: 223 GIRYLS 228
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 159 EKLELLNNKCREM-NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG 217
EKL+L + + +A L L LNL +N+L +LT L L L +NQL+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 218 NLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
+LP+ VF +LT L+ L L GN + S V ++L+ L+++ Q+++
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS 145
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 20/138 (14%)
Query: 133 VLPNLRNLEVLDLSGN-------GLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVEL 184
V +L L L L+ N G+ LT Q +KL L N+ + + + + + L L EL
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 185 NLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSF 244
L+ N+L LT L+ L L++NQL ++P F L L+ ++L GN F
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF---- 191
Query: 245 SLSVLANHSRLEVLQISR 262
+ SR E L +S+
Sbjct: 192 ------DCSRCETLYLSQ 203
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 159 EKLELLNNKCREM-NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG 217
EKL+L + + +A L L LNL +N+L +LT L L L +NQL+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 218 NLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
+LP+ VF +LT L+ L L GN + S V ++L+ L+++ Q+++
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS 145
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 20/138 (14%)
Query: 133 VLPNLRNLEVLDLSGN-------GLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVEL 184
V +L L L L+ N G+ LT Q +KL L N+ + + + + + L L EL
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVFDRLTKLKEL 136
Query: 185 NLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSF 244
L+ N+L LT L+ L L++NQL ++P F L L+ ++L GN F
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF---- 191
Query: 245 SLSVLANHSRLEVLQISR 262
+ SR E+L +S+
Sbjct: 192 ------DCSRCEILYLSQ 203
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 6/155 (3%)
Query: 161 LELLNNKCREMNA-RICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNL 219
L+L N+ + +N +L EL L+ N + P +NL LR L L SN+L +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL-I 95
Query: 220 PISVFANLTSLEYLSLSGNNFQG--SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQ 277
P+ VF L++L L +S N + L N LEV + I F L
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN--S 153
Query: 278 LKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
L+ L L +CN++ L + + L + L H N+
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
EL L E+ L +L P L YLRVL+++ NQL+ L SVF ++ +LE L L
Sbjct: 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILD 328
Query: 237 GN 238
N
Sbjct: 329 SN 330
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505
T+ L L N+ ++ + P L L+++ N++S P N NL L + N
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 506 LEG---DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554
L+ V LSNL LDISENK+ L++ F +L L + +N L
Sbjct: 92 LKLIPLGVFTGLSNLTK---LDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
L NL +L++S NK+ L +L L+ L++ N L + F+ L SLE L+L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEK 161
Query: 238 NNFQGSFSLSVLANHSRLEVLQISRLQI-----------------ETENFPWLPR----- 275
N S L++ L VL++ L I E ++P+L
Sbjct: 162 CNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220
Query: 276 ---FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA 313
L L++ CN++ +++ LR+++LS+N ++
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF 240
L+ LNL+ N + S L LR+LDL N++ L + L ++ + LS N +
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 241 Q--GSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
+ S +++ + RL + +++ ++ P+ P L +L+L NI+ L+
Sbjct: 443 LQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEG 502
Query: 299 QYDLRYIDLSHNNLA 313
+L +D HNNLA
Sbjct: 503 LENLEILDFQHNNLA 517
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 19/110 (17%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGL--IGSLTMQG-EKLELLNNKCREMNARICELKNLV 182
V P P LRNL +LDLS N + I ++G E LE+L+ + NL
Sbjct: 469 VDISPSPFRP-LRNLTILDLSNNNIANINEDLLEGLENLEILD----------FQHNNLA 517
Query: 183 ELNLSWNKLDGSLP-QCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLE 231
L W + + P L L++L +L+L SN L +P+ VF NL L+
Sbjct: 518 RL---WKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVGVFKNLFELK 563
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 41/199 (20%)
Query: 136 NLRNLEVLDLSGNGLIGS---------------------LTMQGEKLELLNNKCREMNAR 174
N +NL LDLS NGL + L ++ E+LE L N
Sbjct: 119 NQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGN-------- 170
Query: 175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANL--TSLEY 232
+L +L+LS N L P C + L L L + QL+ +L + L TS++
Sbjct: 171 ----SSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQN 226
Query: 233 LSLSGNNF----QGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI 288
LSL+ N + +FS N ++L++ + + +F +LP L+ L+L NI
Sbjct: 227 LSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP--SLRYLSLEYNNI 284
Query: 289 SGTIPSFLQYQYDLRYIDL 307
P +LRY+ L
Sbjct: 285 QRLSPRSFYGLSNLRYLSL 303
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 25/118 (21%)
Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
LEL +N+ ++ A + L + EL LS N L ++ L ++ LDLTS Q++ P
Sbjct: 68 LELKDNQITDL-APLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP 124
Query: 221 -------------------ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
IS A LT+L+YLS+ N Q S L+ LAN S+L L+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIG--NAQVS-DLTPLANLSKLTTLK 179
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 24/167 (14%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL--NAPSLHILDVSNN 480
S F+N + N F +F ++ +L L L N + L+ N SL LDVS N
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413
Query: 481 MLSGQLPHWVGNFS-NLDVLLMSRNSLEGDV-------------------SVP--LSNLQ 518
L+ ++ ++ VL +S N L G V S+P +++LQ
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQ 473
Query: 519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS 565
+ L+++ N+L + F+ +SL +++LH+N + + P + S
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLS 520
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 32/133 (24%)
Query: 137 LRNLEVLDLSGNGL-----IGSLTMQGEKLELLNNKCREMNA----RICE-LKNLVELNL 186
L+ L+ L L NGL + +T LE L+ +N+ R C ++++ LNL
Sbjct: 376 LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNL 435
Query: 187 SWNKLDGSLPQCL---------------------SNLTYLRVLDLTSNQLSGNLPISVFA 225
S N L GS+ +CL ++L L+ L++ SNQL +P VF
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFD 494
Query: 226 NLTSLEYLSLSGN 238
LTSL+Y+ L N
Sbjct: 495 RLTSLQYIWLHDN 507
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 20/145 (13%)
Query: 136 NLRNLEVLDLSGNGL----------IGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+L +LE LDLS NGL G+++++ L+L N M++ L+ L L+
Sbjct: 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK--YLDLSFNGVITMSSNFLGLEQLEHLD 426
Query: 186 LSWNKL----DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
+ L + S+ L NL YL + T +++ N +F L+SLE L ++GN+FQ
Sbjct: 427 FQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQ 482
Query: 242 GSFSLSVLANHSRLEVLQISRLQIE 266
+F + L L +S+ Q+E
Sbjct: 483 ENFLPDIFTELRNLTFLDLSQCQLE 507
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 154 LTMQGEKLELLNNKCREM-NARICELKNLVELNLSWNKLDGSLPQCLSN-LTYLRVLDLT 211
+ Q L+L N + + N EL +L +L L NKL SLP + N LT L L+L+
Sbjct: 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84
Query: 212 SNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267
+NQL +LP VF LT L+ L+L+ N Q S V ++L+ L++ + Q+++
Sbjct: 85 TNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 58/141 (41%), Gaps = 15/141 (10%)
Query: 184 LNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
L+L N L SLP LT L L L N+L +LP VF LTSL YL+LS N Q
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWLPR------FQLKVLNLRRCNISGTIPSFL 296
L N ++ Q+ L + T LP QLK L L + +
Sbjct: 91 ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144
Query: 297 QYQYDLRYIDLSHNNLAGTFP 317
L+YI L N T P
Sbjct: 145 DRLTSLQYIWLHDNPWDCTCP 165
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWV-GNFSN 495
+F + S+TQL YL N+ L G+ N SL L++S N L LP+ V +
Sbjct: 47 VFDELTSLTQL---YLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQ 101
Query: 496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555
L L ++ N L+ L + L + +N+L + F+ +SL +++LH+N +
Sbjct: 102 LKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Query: 556 GSIPSALFQS 565
+ P + S
Sbjct: 162 CTCPGIRYLS 171
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 125 GVGFKPMKVLPNLRNLEVLDLSGN-------GLIGSLTMQGEKLELLNNKCREM-NARIC 176
G + L L NL L L+GN G+ LT E L L+ N+ + + +
Sbjct: 72 GNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE-LVLVENQLQSLPDGVFD 130
Query: 177 ELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
+L NL L L N+L SLP+ LT L LDL +NQL LP VF LT L+ LSL
Sbjct: 131 KLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSL 188
Query: 236 SGNNFQ 241
+ N +
Sbjct: 189 NDNQLK 194
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNL 219
L L NK +++A + EL NL L L+ N+L SLP LT L+ L L NQL L
Sbjct: 68 LALGGNKLHDISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-L 124
Query: 220 PISVFANLTSLEYLSLSGNNFQ----GSFSLSVLANHSRLEV 257
P VF LT+L YL L N Q G F L N +RL++
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVF--DKLTNLTRLDL 164
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 177 ELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
+L NL L+L N+L SLP+ LT L+ L L NQL +P VF LTSL ++ L
Sbjct: 155 KLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWL 212
Query: 236 SGN 238
N
Sbjct: 213 LNN 215
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 439 FPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWVGNFSNLD 497
P+Y A L LN+N+FT G+ P L ++ SNN ++ S ++
Sbjct: 30 IPQYT-----AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN 84
Query: 498 VLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS 557
+L++ N LE L+ + L + N++ SF SS+ L L++N +
Sbjct: 85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144
Query: 558 IPSALFQSSQLMTLDLRDNEFSGN 581
P A L TL+L N F+ N
Sbjct: 145 APGAFDTLHSLSTLNLLANPFNCN 168
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 4/140 (2%)
Query: 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWV-GNFSNLDVL 499
+ +T+L LYLNDN+ L G+ +L L V++N L LP V NL L
Sbjct: 57 FHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAEL 114
Query: 500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIP 559
+ RN L+ +L L + N+L + F+ +SL L L+NN L
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174
Query: 560 SALFQSSQLMTLDLRDNEFS 579
A + ++L TL L +N+
Sbjct: 175 GAFDKLTELKTLKLDNNQLK 194
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
+L NL EL L N+L P+ +LT L L L N+L +LP VF LTSL+ L L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLY 165
Query: 237 GNNF----QGSFSLSVLANHSRLEVLQISRL 263
N +G+F +L+ Q+ R+
Sbjct: 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
+L+L NKL + LT LR+L L N+L LP +F L +LE L ++ N Q
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98
Query: 243 SFSLSVLANHSRLEVLQISRLQIET 267
+ + V L L++ R Q+++
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKS 123
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 78/195 (40%), Gaps = 25/195 (12%)
Query: 123 NLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLV 182
+LGVG L L NL+ LDLS N + S C + + L +L
Sbjct: 337 HLGVG-----CLEKLGNLQTLDLSHNDIEAS-------------DCCSLQLK--NLSHLQ 376
Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
LNLS N+ G Q L +LDL +L N P S F NL L+ L+L+ F
Sbjct: 377 TLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT-YCFLD 435
Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQ----LKVLNLRRCNISGTIPSFLQY 298
+ + +LA L L + + Q L+VL L C +
Sbjct: 436 TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHS 495
Query: 299 QYDLRYIDLSHNNLA 313
+ ++DLSHN+L
Sbjct: 496 LGKMSHVDLSHNSLT 510
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 20/187 (10%)
Query: 132 KVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191
+ L L NL+ LDLS + + S C N ++ L++L LNLS+N+
Sbjct: 343 RCLEKLENLQKLDLSHSDIEAS-------------DC--CNLQLKNLRHLQYLNLSYNEP 387
Query: 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLAN 251
G Q L +LD+ L P S F NL L L+LS S + +LA
Sbjct: 388 LGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTS-NQHLLAG 446
Query: 252 HSRLEVLQISRLQIETENFPWLPRFQ----LKVLNLRRCNISGTIPSFLQYQYDLRYIDL 307
L L + + + Q L++L L CN+ ++ ++DL
Sbjct: 447 LQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDL 506
Query: 308 SHNNLAG 314
SHN+L G
Sbjct: 507 SHNSLTG 513
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 223 VFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETEN---FPWLPRFQLK 279
+F LTSL L ++GN+F+ + +V AN + L L +S+ Q+E + F L R QL
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL- 501
Query: 280 VLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
LN+ N+ S Y L +D S N +
Sbjct: 502 -LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 223 VFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETEN---FPWLPRFQLK 279
+F LTSL L ++GN+F+ + +V AN + L L +S+ Q+E + F L R QL
Sbjct: 438 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL- 496
Query: 280 VLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGT 315
LN+ N+ S Y L +D S N + +
Sbjct: 497 -LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 531
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 20/145 (13%)
Query: 136 NLRNLEVLDLSGNGL----------IGSLTMQGEKLELLNNKCREMNARICELKNLVELN 185
+L +LE LDLS NGL G+ +++ L+L N M++ L+ L L+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK--YLDLSFNGVITMSSNFLGLEQLEHLD 402
Query: 186 LSWNKL----DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
+ L + S+ L NL YL + T +++ N +F L+SLE L ++GN+FQ
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQ 458
Query: 242 GSFSLSVLANHSRLEVLQISRLQIE 266
+F + L L +S+ Q+E
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE 483
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.4 bits (85), Expect = 0.034, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 133 VLPNLRNLEVLDLSGN-------GLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVEL 184
V +L NL+ L L N G+ SLT Q L+L N+ + + + + L +L EL
Sbjct: 59 VFDSLINLKELYLGSNQLGALPVGVFDSLT-QLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117
Query: 185 NLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
+ NKL LP+ + LT+L L L NQL ++P F L+SL + L GN
Sbjct: 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 444 SMTQLAWLYLNDNQFTGRLEEGLLNA-PSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLM 501
S+ L LYL NQ G L G+ ++ L +LD+ N L+ LP V +L L M
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFM 119
Query: 502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552
N L ++ + L L + +N+L +F+ SSL H +L N
Sbjct: 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-SQLM 569
SVP A+IL + +N++ F+ +L L+L +N L G++P +F S +QL
Sbjct: 33 SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLT 91
Query: 570 TLDLRDNEFS 579
LDL N+ +
Sbjct: 92 VLDLGTNQLT 101
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF--- 240
LNL+ NK+ S L +L VLDL N++ L + L ++ + LS N +
Sbjct: 396 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 455
Query: 241 -QGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
+ SF+L + + RL + +++ +++ P+ P L +L+L NI+ L+
Sbjct: 456 TRNSFAL--VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 513
Query: 300 YDLRYIDLSHNNLA 313
L +DL HNNLA
Sbjct: 514 EKLEILDLQHNNLA 527
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 137 LRNLEVLDLSGNGLIGSLT--MQG-EKLELLNNKCREMNARICE-------------LKN 180
LRNL +LDLS N + ++G EKLE+L+ + + AR+ + L +
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSH 547
Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
L LNL N D + +L L+++DL N L LP SVF N SL+ L+L N
Sbjct: 548 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 604
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 138 RNLEVLDLSGNGLIGSLTMQGEKLELL--------NNKCREMNARICEL---KNLVELNL 186
+NL LDLS NGL S T G +++L NNK + + + ++ +L +L L
Sbjct: 131 KNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 188
Query: 187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANL--TSLEYLSLSGNNFQGSF 244
S N++ P C + L L L + QL +L + L TS+ LSLS + +
Sbjct: 189 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 248
Query: 245 SLSVLA-NHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQY 300
+ + L + L +L +S + ++F WLP QL+ L NI L +
Sbjct: 249 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLF 306
Query: 301 DLRYIDL 307
++RY++L
Sbjct: 307 NVRYLNL 313
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 161 LELLNNKCREM---NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS- 216
LEL N R + N+++ N L L W T L +LDL+ N L+
Sbjct: 227 LELANTSIRNLSLSNSQLSTTSNTTFLGLKW--------------TNLTMLDLSYNNLNV 272
Query: 217 -GNLPISVFANLTSLEYLSLSGNNFQGSFS-----------LSVLANHSRLEVLQISRLQ 264
GN FA L LEY L NN Q FS L++ + ++ + S +
Sbjct: 273 VGN---DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 329
Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
I+ +F WL L+ LN+ +I G + +L+Y+ LS
Sbjct: 330 IDDFSFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 371
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF--- 240
LNL+ NK+ S L +L VLDL N++ L + L ++ + LS N +
Sbjct: 391 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 450
Query: 241 -QGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
+ SF+L + + RL + +++ +++ P+ P L +L+L NI+ L+
Sbjct: 451 TRNSFAL--VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 508
Query: 300 YDLRYIDLSHNNLA 313
L +DL HNNLA
Sbjct: 509 EKLEILDLQHNNLA 522
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%)
Query: 137 LRNLEVLDLSGNGLIGSLT--MQG-EKLELLNNKCREMNARICE-------------LKN 180
LRNL +LDLS N + ++G EKLE+L+ + + AR+ + L +
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSH 542
Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
L LNL N D + +L L+++DL N L LP SVF N SL+ L+L N
Sbjct: 543 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNLQKN 599
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 138 RNLEVLDLSGNGLIGSLTMQGEKLELL--------NNKCREMNARICEL---KNLVELNL 186
+NL LDLS NGL S T G +++L NNK + + + ++ +L +L L
Sbjct: 126 KNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 183
Query: 187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANL--TSLEYLSLSGNNFQGSF 244
S N++ P C + L L L + QL +L + L TS+ LSLS + +
Sbjct: 184 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 243
Query: 245 SLSVLA-NHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQY 300
+ + L + L +L +S + ++F WLP QL+ L NI L +
Sbjct: 244 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLF 301
Query: 301 DLRYIDL 307
++RY++L
Sbjct: 302 NVRYLNL 308
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 161 LELLNNKCREM---NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS- 216
LEL N R + N+++ N L L W T L +LDL+ N L+
Sbjct: 222 LELANTSIRNLSLSNSQLSTTSNTTFLGLKW--------------TNLTMLDLSYNNLNV 267
Query: 217 -GNLPISVFANLTSLEYLSLSGNNFQGSFS-----------LSVLANHSRLEVLQISRLQ 264
GN FA L LEY L NN Q FS L++ + ++ + S +
Sbjct: 268 VGN---DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 324
Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
I+ +F WL L+ LN+ +I G + +L+Y+ LS
Sbjct: 325 IDDFSFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 366
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF--- 240
LNL+ NK+ S L +L VLDL N++ L + L ++ + LS N +
Sbjct: 386 LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445
Query: 241 -QGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
+ SF+L + + RL + +++ +++ P+ P L +L+L NI+ L+
Sbjct: 446 TRNSFAL--VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 300 YDLRYIDLSHNNLA 313
L +DL HNNLA
Sbjct: 504 EKLEILDLQHNNLA 517
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 137 LRNLEVLDLSGNGLIGSLT--MQG-EKLELLNNKCREMNARICE-------------LKN 180
LRNL +LDLS N + ++G EKLE+L+ + + AR+ + L +
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSH 537
Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
L LNL N D + +L L+++DL N L+ LP SVF N SL+ L+L N
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKN 594
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 87/187 (46%), Gaps = 21/187 (11%)
Query: 138 RNLEVLDLSGNGLIGSLTMQGEKLELL--------NNKCREMNARICEL---KNLVELNL 186
+NL LDLS NGL S T G +++L NNK + + + ++ +L +L L
Sbjct: 121 KNLITLDLSHNGL--SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 187 SWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANL--TSLEYLSLSGNNFQGSF 244
S N++ P C + L L L + QL +L + L TS+ LSLS + +
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 245 SLSVLA-NHSRLEVLQISRLQIET---ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQY 300
+ + L + L +L +S + ++F WLP QL+ L NI L +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP--QLEYFFLEYNNIQHLFSHSLHGLF 296
Query: 301 DLRYIDL 307
++RY++L
Sbjct: 297 NVRYLNL 303
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 35/164 (21%)
Query: 161 LELLNNKCREM---NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLS- 216
LEL N R + N+++ N L L W T L +LDL+ N L+
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKW--------------TNLTMLDLSYNNLNV 262
Query: 217 -GNLPISVFANLTSLEYLSLSGNNFQGSFS-----------LSVLANHSRLEVLQISRLQ 264
GN FA L LEY L NN Q FS L++ + ++ + S +
Sbjct: 263 VGN---DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319
Query: 265 IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLS 308
I+ +F WL L+ LN+ +I G + +L+Y+ LS
Sbjct: 320 IDDFSFQWLK--CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 18/90 (20%)
Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
E L W+ +G L++L+VL L N L+ +LP VF++LT+L LSL+ N
Sbjct: 468 ETELCWDVFEG--------LSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNR--- 515
Query: 243 SFSLSVLANH---SRLEVLQISRLQIETEN 269
L+VL+++ + LE+L ISR Q+ N
Sbjct: 516 ---LTVLSHNDLPANLEILDISRNQLLAPN 542
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 142 VLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCLS 200
+ D N G L+L + +N+R+ E LK+L LNL++NK++ +
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 201 NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN 239
L L+VL+L+ N L G L S F L + Y+ L N+
Sbjct: 312 GLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNH 349
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 25/118 (21%)
Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
LEL +N+ ++ + L + EL LS N L ++ L ++ LDLTS Q++ P
Sbjct: 74 LELKDNQITDLTP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTP 130
Query: 221 -------------------ISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259
IS A LT+L+YLS+ N L+ LAN S+L L+
Sbjct: 131 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTLR 185
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 154 LTMQGEKLELLNNKCREM---NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDL 210
LT + L+L NK + + R C NL L L ++++ +L L LDL
Sbjct: 24 LTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 211 TSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ------ 264
+ N LS +L S F L+SL+YL+L GN +Q S+ N + L+ L+I ++
Sbjct: 82 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140
Query: 265 -IETENFPWLPRFQLKVLNLR 284
I+ L ++K L+LR
Sbjct: 141 RIDFAGLTSLNELEIKALSLR 161
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 471 SLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL-QVARILDISENK 529
+L +LDVSNN L + L L +SRN L+ ++P ++L V ++ IS N+
Sbjct: 432 TLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK---TLPDASLFPVLLVMKISRNQ 484
Query: 530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIP 559
L + F+ +SL ++LH N + S P
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 13/141 (9%)
Query: 154 LTMQGEKLELLNNKCREM---NARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDL 210
LT + L+L NK + + R C NL L L ++++ +L L LDL
Sbjct: 50 LTAAMKSLDLSFNKITYIGHGDLRAC--ANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 107
Query: 211 TSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQ------ 264
+ N LS +L S F L+SL+YL+L GN +Q S+ N + L+ L+I ++
Sbjct: 108 SDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 166
Query: 265 -IETENFPWLPRFQLKVLNLR 284
I+ L ++K L+LR
Sbjct: 167 RIDFAGLTSLNELEIKALSLR 187
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 471 SLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNL-QVARILDISENK 529
+L +LDVSNN L + L L +SRN L+ ++P ++L V ++ I+ N+
Sbjct: 458 TLEVLDVSNN----NLDSFSLFLPRLQELYISRNKLK---TLPDASLFPVLLVMKIASNQ 510
Query: 530 LYGPLEFSFNHSSSLWHLFLHNNSLNGSIP 559
L + F+ +SL ++LH N + S P
Sbjct: 511 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 540
>pdb|1K0O|A Chain A, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0O|B Chain B, Crystal Structure Of A Soluble Form Of Clic1. An
Intracellular Chloride Ion Channel
pdb|1K0N|A Chain A, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0N|B Chain B, Chloride Intracellular Channel 1 (Clic1) Complexed With
Glutathione
pdb|1K0M|A Chain A, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
pdb|1K0M|B Chain B, Crystal Structure Of A Soluble Monomeric Form Of Clic1 At
1.4 Angstroms
Length = 241
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEGVDETSAEDEGVSQRKFLDGN 171
>pdb|3O3T|A Chain A, Crystal Structure Analysis Of M32a Mutant Of Human Clic1
Length = 241
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEEVDETSAEDEGVSQRKFLDGN 171
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 159 EKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG 217
++L L NN+ ++ + + L NL +L + NKL LT L LDL N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 218 NLPISVFANLTSLEYLSLSGN 238
++P F NL SL ++ L N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNN 115
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 477 VSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEF 536
++NN ++ P + NL L + N L + L LD+++N L
Sbjct: 40 LNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99
Query: 537 SFNHSSSLWHLFLHNN 552
+F++ SL H++L+NN
Sbjct: 100 AFDNLKSLTHIYLYNN 115
>pdb|1RK4|A Chain A, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
pdb|1RK4|B Chain B, Crystal Structure Of A Soluble Dimeric Form Of Oxidised
Clic1
Length = 243
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 98 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 147
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 148 SPLPEEVDETSAEDEGVSQRKFLDGN 173
>pdb|3UVH|A Chain A, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
pdb|3UVH|B Chain B, Crystal Structure Analysis Of E81m Mutant Of Human Clic1
Length = 241
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEEVDETSAEDEGVSQRKFLDGN 171
>pdb|3SWL|A Chain A, Crystal Structure Analysis Of H74a Mutant Of Human Clic1
Length = 236
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 91 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 140
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 141 SPLPEEVDETSAEDEGVSQRKFLDGN 166
>pdb|3TGZ|A Chain A, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
pdb|3TGZ|B Chain B, Crystal Structure Analysis Of W35fH207W MUTANT OF HUMAN
CLIC1
Length = 241
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEEVDETSAEDEGVSQRKFLDGN 171
>pdb|3QR6|A Chain A, Crystal Structure Analysis Of H185f Mutant Of Human Clic1
Length = 241
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEEVDETSAEDEGVSQRKFLDGN 171
>pdb|3P90|A Chain A, Crystal Structure Analysis Of H207f Mutant Of Human Clic1
Length = 241
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEEVDETSAEDEGVSQRKFLDGN 171
>pdb|3P8W|A Chain A, Crystal Structure Analysis Of R29mE81M DOUBLE MUTANT OF
HUMAN CLIC1
Length = 241
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 96 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 145
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 146 SPLPEEVDETSAEDEGVSQRKFLDGN 171
>pdb|4IQA|A Chain A, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
pdb|4IQA|B Chain B, Crystal Structure Analysis Of The E228l Mutant Of Human
Clic1
Length = 236
Score = 34.7 bits (78), Expect = 0.22, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 424 LAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLS 483
LA +N N G IF K+ + + + LNDN LE+GLL A L V +N L+
Sbjct: 91 LAALNPESNTAGLDIFAKFSAYIKNSNPALNDN-----LEKGLLKA-----LKVLDNYLT 140
Query: 484 GQLPHWVGNFSNLDVLLMSRNSLEGD 509
LP V S D + R L+G+
Sbjct: 141 SPLPEEVDETSAEDEGVSQRKFLDGN 166
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 161 LELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP 220
L+L N + ++A I + L L L+ N L LP + NL+ LRVLDL+ N+L+ +LP
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLP 286
Query: 221 ISV----------------------FANLTSLEYLSLSGNNFQGSFSLSVLANHS 253
+ F NL +L++L + GN + F L +L S
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF-LKILTEKS 340
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 130 PMKVLPNLRNLEVLDLSGNGL----------IGSLTMQGEKLELLNNKCREMNARICELK 179
P V L L L LS NGL G+ +++ L+L N M++ L+
Sbjct: 44 PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK--YLDLSFNGVITMSSNFLGLE 101
Query: 180 NLVELNLSWNKL----DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235
L L+ + L + S+ L NL YL + T +++ N +F L+SLE L +
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI-SHTHTRVAFN---GIFNGLSSLEVLKM 157
Query: 236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIE 266
+GN+FQ +F + L L +S+ Q+E
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 208 LDLTSNQLSGNLPISVFANLTSLEYLSLSGN--NFQGSFSLSVLANHSRLEVLQISRLQI 265
L+L SN+L +LP VF LT L LSLS N +F+G S S S L+ L +S +
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-LKYLDLSFNGV 90
Query: 266 ETENFPWLPRFQLKVLNLRRCNIS--GTIPSFLQYQYDLRYIDLSHNNLAGTF 316
T + +L QL+ L+ + N+ FL + +L Y+D+SH + F
Sbjct: 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTRVAF 142
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQ 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
+L + +N + P N+ L VL L N LS LP +F N L LS+S NN +
Sbjct: 97 KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLER 155
Query: 243 SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302
+ A S L+ LQ+S ++ + +P +L N+S + S L +
Sbjct: 156 IEDDTFQATTS-LQNLQLSSNRLTHVDLSLIP-------SLFHANVSYNLLSTLAIPIAV 207
Query: 303 RYIDLSHNNL 312
+D SHN++
Sbjct: 208 EELDASHNSI 217
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNF 240
L EL+L+ L LP L L+ L+ L L++N+ IS +N SL +LS+ GN
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISA-SNFPSLTHLSIKGNTK 337
Query: 241 QGSFSLSVLANHSRLEVLQISRLQIETEN 269
+ L N L L +S IET +
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSD 366
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 85/196 (43%), Gaps = 19/196 (9%)
Query: 134 LPNLRNLEVLDLSGNGLIGSLT---MQGEKLELLNN-----KCREMNARICELKNLVELN 185
L NL +L+ L+LS N + T + +LELL+ K ++ + L L LN
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQL-SGNL-PISVFANLTSLEYLSLSGNNF--- 240
LS + LD S Q L L+ L+L N GN+ + L LE L LS +
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 241 -QGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ 299
Q +F+ + NH L +++ IE L + LNL +IS +PS L
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEA-----LSHLKGIYLNLASNHISIILPSLLPIL 546
Query: 300 YDLRYIDLSHNNLAGT 315
R I+L N L T
Sbjct: 547 SQQRTINLRQNPLDCT 562
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 27/197 (13%)
Query: 124 LGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVE 183
LG G L NL NL LDLS + + S C + R L +L
Sbjct: 341 LGTG-----CLENLENLRELDLSHDDIETS-------------DCCNLQLR--NLSHLQS 380
Query: 184 LNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
LNLS+N+ + L +LDL +L S F NL L+ L+LS + S
Sbjct: 381 LNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440
Query: 244 ----FSLSVLANHSRLEVLQISRLQIE-TENFPWLPRFQLKVLNLRRCNISGTIPSFLQY 298
F H L+ + I+ T + L R ++ VL+ C++S
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF--CDLSSIDQHAFTS 498
Query: 299 QYDLRYIDLSHNNLAGT 315
+ ++DLSHN L +
Sbjct: 499 LKMMNHVDLSHNRLTSS 515
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRL 255
P N+ L VL L N LS LP +F N L LS+S NN + + A S L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-L 173
Query: 256 EVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL 312
+ LQ+S ++ + +P +L N+S + S L + +D SHN++
Sbjct: 174 QNLQLSSNRLTHVDLSLIP-------SLFHANVSYNLLSTLAIPIAVEELDASHNSI 223
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANND 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 102 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 160
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 161 LT-ELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 136 NLRNLEVLDLSGN-------GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSW 188
+L +L L L+GN G L+ + + + N N I LK L ELN++
Sbjct: 76 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 135
Query: 189 NKLDG-SLPQCLSNLTYLRVLDLTSNQL 215
N + LP+ SNLT L LDL+SN++
Sbjct: 136 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.1 bits (74), Expect = 0.75, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237
L L LNL+ N+L LT L L L NQL ++P+ VF NL SL ++ L
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSLTHIYLFN 121
Query: 238 N 238
N
Sbjct: 122 N 122
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 136 NLRNLEVLDLSGN-------GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSW 188
+L +L L L+GN G L+ + + + N N I LK L ELN++
Sbjct: 75 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 134
Query: 189 NKLDG-SLPQCLSNLTYLRVLDLTSNQL 215
N + LP+ SNLT L LDL+SN++
Sbjct: 135 NLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLN-APSLHILDVSNNM 481
+L ++VS N + +L LYL N+ L GLL P L L ++NN
Sbjct: 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159
Query: 482 LSGQLPHWVGN-FSNLDVLLMSRNSL 506
L+ +LP + N NLD LL+ NSL
Sbjct: 160 LT-ELPAGLLNGLENLDTLLLQENSL 184
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGN-LPISVFANLTSLEYLSLS 236
L +L+ L L +N+ + L L VL LT L G L + F LTSLE L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 237 GNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRR 285
NN + S N R VL ++ ++++ L FQ K L R
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
+L +L L+ N+++ LT+L+ L L +NQL ++P +F LTSL+ + L N
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 357
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGN-LPISVFANLTSLEYLSLS 236
L +L+ L L +N+ + L L VL LT L G L + F LTSLE L L
Sbjct: 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137
Query: 237 GNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRR 285
NN + S N R VL ++ ++++ L FQ K L R
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
E + +LS +K+ L S+ T L L L N+++ + + F LT L L+LS
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331
Query: 237 GNNFQGSFSLSVLANHSRLEVLQISRLQIET---ENFPWLPRFQ 277
NF GS + N +LEVL +S I ++F LP +
Sbjct: 332 -QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 24/105 (22%)
Query: 520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS 579
+ D+S++K++ L+ F+H + L L L N +N +A + + L+ L+L N F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FL 335
Query: 580 GNIPPLINEDSXXXXXXXXXXXXXXXIPQQLCHLRKIAIVDISYN 624
G+I + E+ L K+ ++D+SYN
Sbjct: 336 GSIDSRMFEN-----------------------LDKLEVLDLSYN 357
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 134 LPNLRNLEVLDLSGNGLIGSLTMQG-EKLELLN---NKCREMNARICELKNLVELNLSWN 189
L L+ + L LS N + ++ G E L +L+ N +++ L EL +S+N
Sbjct: 45 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 104
Query: 190 KLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
++ SL + L LRVL +++N+++ I A L LE L L+GN + +
Sbjct: 105 QI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 162
Query: 250 ANHSRLEVLQ 259
+ R+EV++
Sbjct: 163 TSEYRIEVVK 172
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 134 LPNLRNLEVLDLSGNGLIGSLTMQG-EKLELLN---NKCREMNARICELKNLVELNLSWN 189
L L+ + L LS N + ++ G E L +L+ N +++ L EL +S+N
Sbjct: 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103
Query: 190 KLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249
++ SL + L LRVL +++N+++ I A L LE L L+GN + +
Sbjct: 104 QI-ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161
Query: 250 ANHSRLEVLQ 259
+ R+EV++
Sbjct: 162 TSEYRIEVVK 171
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 61/168 (36%), Gaps = 1/168 (0%)
Query: 413 LPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-PS 471
+P C +L + + N G + +T L L L+DN ++
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531
LH L + L P + L L + N+L+ +L L + N++
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS 579
E +F SL L LH N + P A +LMTL L N S
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 43/183 (23%), Positives = 71/183 (38%), Gaps = 6/183 (3%)
Query: 346 SKRDLLHLVISNNNFIGMLPDNF-GMILPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXX 404
S R+L L + +N G+ F G+ L E LD+S N+ + P+ +
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLE--QLDLSDNAQLRVVDPTTFRGLGHLHTLH 110
Query: 405 XXXXXXGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEE 464
EL G +L ++ + N + + L L+L+ N+ E
Sbjct: 111 LDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEH 170
Query: 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE---GDVSVPLSNLQVAR 521
SL L + N ++ PH + L L + N+L +V VPL +LQ R
Sbjct: 171 AFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLR 230
Query: 522 ILD 524
+ D
Sbjct: 231 LND 233
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 126 VGFKPMKVLPNLRNLEVLDLSGNGLIG-------SLTMQGEKLELLNN-KCREMNARICE 177
+ + P + RNL +L L N L G LT+ E+L+L +N + R ++
Sbjct: 43 ISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL-EQLDLSDNAQLRVVDPTTFR 101
Query: 178 -LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLS 236
L +L L+L L P L L+ L L N L LP + F +L +L +L L
Sbjct: 102 GLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLH 160
Query: 237 GNN--------FQGSFSLSVLANH 252
GN F+G SL L H
Sbjct: 161 GNRIPSVPEHAFRGLHSLDRLLLH 184
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 136 NLRNLEVLDLSGNGLIGSLTMQG-------EKLELLNNKCREMNARICE-LKNLVELNLS 187
+LR+LE+L LS N L+ + + LEL +N+ + + E L L EL L
Sbjct: 57 HLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 188 WNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLS 247
N ++ + + LR LDL + + + F L +L YL+L N + +L+
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
Query: 248 VLANHSRLEVLQIS--RLQ-IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY 304
L RLE L++S RL I +F L L+ L L ++ + L
Sbjct: 176 ALV---RLEELELSGNRLDLIRPGSFQGLT--SLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 305 IDLSHNNL 312
++LSHNNL
Sbjct: 231 LNLSHNNL 238
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 189 NKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
N++ P LT L LDL +NQL+ LP VF LT L LSL+ N +
Sbjct: 40 NRITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 17/188 (9%)
Query: 136 NLRNLEVLDLSGNGLIGSLTMQG-------EKLELLNNKCREMNARICE-LKNLVELNLS 187
+LR+LE+L LS N L+ + + LEL +N+ + + E L L EL L
Sbjct: 57 HLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 188 WNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLS 247
N ++ + + LR LDL + + + F L +L YL+L N + +L+
Sbjct: 116 NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLT 175
Query: 248 VLANHSRLEVLQIS--RLQ-IETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY 304
L RLE L++S RL I +F L L+ L L ++ + L
Sbjct: 176 ALV---RLEELELSGNRLDLIRPGSFQGLT--SLRKLWLMHAQVATIERNAFDDLKSLEE 230
Query: 305 IDLSHNNL 312
++LSHNNL
Sbjct: 231 LNLSHNNL 238
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
+ + E+ L N + P S LR +DL++NQ+S P F L SL L L GN
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
P LT L LDL +NQL+ LP VF LT L LSL+ N +
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 99
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 196 PQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241
P LT L LDL +NQL+ LP VF LT L LSL+ N +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQLK 91
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 141 EVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGSLPQCL 199
E+ +S +GL G L KLEL N+ + E ++ EL L NK+ +
Sbjct: 40 ELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98
Query: 200 SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250
L L+ L+L NQ+S +P S F +L SL L+L+ N F + L+ A
Sbjct: 99 LGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNCHLAWFA 148
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 210 LTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQI-ETE 268
++S+ L G LP V L + + N F+G+ S ++ LQ+ +I E
Sbjct: 44 ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------SHIQELQLGENKIKEIS 94
Query: 269 NFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310
N +L QLK LNL IS +P ++ L ++L+ N
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 4.2, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 3/156 (1%)
Query: 372 LPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMNVSH 431
L L LD+S N+ S+ P+ + + EL G +L ++ +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138
Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
N + + L L+L+ N+ + E SL L + N ++ PH
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 492 NFSNLDVLLMSRNSLEG---DVSVPLSNLQVARILD 524
+ L L + N+L + PL LQ R+ D
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 58/156 (37%), Gaps = 3/156 (1%)
Query: 372 LPELVYLDMSQNSFEGSIPPSMGYTVRXXXXXXXXXXXXGELPKQFLTGCVSLAFMNVSH 431
L L LD+S N+ S+ P+ + + EL G +L ++ +
Sbjct: 78 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 137
Query: 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG 491
N + + L L+L+ N+ + E SL L + N ++ PH
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 492 NFSNLDVLLMSRNSLEG---DVSVPLSNLQVARILD 524
+ L L + N+L + PL LQ R+ D
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND 233
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 136 NLRNLEVLDLSGNGL-----IGSLTMQGEKLELL----NNKCREMNARICE-LKNLVELN 185
+L LE L L N L I +T Q + L+ L N+ + C K+L+ LN
Sbjct: 346 HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 186 LSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQG 242
+S N L ++ +CL ++VLDL SN++ +P V L +L+ L+++ N +
Sbjct: 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQV-VKLEALQELNVASNQLKS 458
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 21/115 (18%)
Query: 130 PMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICE-LKNLVELNLSW 188
P +L ++RNL L+L N EM + + + L+NL +
Sbjct: 139 PANLLTDMRNLSHLELRAN-------------------IEEMPSHLFDDLENLESIEFGS 179
Query: 189 NKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243
NKL + L+ L+L SNQL ++P +F LTSL+ + L N + S
Sbjct: 180 NKLRQMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 233
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238
+ + E+ L N + P S LR +DL++NQ+S P F L SL L L GN
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN 90
Query: 239 NF 240
Sbjct: 91 KI 92
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,679,733
Number of Sequences: 62578
Number of extensions: 910161
Number of successful extensions: 2571
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1681
Number of HSP's gapped (non-prelim): 529
length of query: 883
length of database: 14,973,337
effective HSP length: 107
effective length of query: 776
effective length of database: 8,277,491
effective search space: 6423333016
effective search space used: 6423333016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)