Query 041908
Match_columns 883
No_of_seqs 798 out of 5542
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 11:57:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041908.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041908hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.9E-75 1.3E-79 723.7 50.2 585 28-819 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.6E-60 9.9E-65 590.0 41.3 516 179-816 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.6E-42 5.7E-47 347.3 -17.0 480 175-792 41-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 2E-40 4.3E-45 333.7 -12.4 477 89-627 46-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.5E-36 3.3E-41 318.8 7.2 364 231-599 81-448 (873)
6 KOG4194 Membrane glycoprotein 100.0 1.8E-36 3.9E-41 318.2 7.6 375 349-796 79-456 (873)
7 KOG0618 Serine/threonine phosp 100.0 6E-36 1.3E-40 331.2 -5.0 463 90-625 23-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2E-35 4.4E-40 327.0 -3.0 482 183-790 2-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 4.7E-33 1E-37 293.9 -0.4 326 372-798 77-410 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 7.7E-33 1.7E-37 292.3 -3.5 364 348-791 7-374 (1255)
11 KOG4237 Extracellular matrix p 99.9 1.3E-27 2.7E-32 241.6 -4.3 410 348-765 67-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-22 3.5E-27 252.5 27.4 249 372-631 557-819 (1153)
13 PLN03210 Resistant to P. syrin 99.9 2.3E-22 4.9E-27 251.2 28.4 317 364-766 580-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 5.8E-22 1.3E-26 228.9 17.0 267 373-777 201-467 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 2.9E-21 6.2E-26 223.2 17.9 269 348-755 201-469 (788)
16 KOG4237 Extracellular matrix p 99.9 4.7E-23 1E-27 208.7 -0.6 298 169-506 59-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 5.7E-20 1.2E-24 214.2 12.8 247 422-768 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.7E-24 211.4 12.6 203 373-603 178-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 7.3E-20 1.6E-24 199.1 1.2 181 426-627 2-206 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.3E-24 195.7 2.3 208 401-628 2-235 (319)
21 KOG0617 Ras suppressor protein 99.7 6.4E-19 1.4E-23 158.5 -5.0 182 540-796 31-216 (264)
22 PLN03150 hypothetical protein; 99.6 2.9E-16 6.2E-21 183.2 9.9 118 708-825 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 1.5E-17 3.2E-22 149.8 -3.7 164 444-613 31-195 (264)
24 PLN03150 hypothetical protein; 99.5 1E-13 2.3E-18 161.8 13.4 155 26-215 368-527 (623)
25 KOG0532 Leucine-rich repeat (L 99.4 1.5E-14 3.3E-19 153.9 -2.6 176 541-794 74-249 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 4.1E-13 8.9E-18 143.2 -4.0 189 499-766 80-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 3.1E-11 6.7E-16 135.2 8.5 199 498-774 97-296 (394)
28 COG4886 Leucine-rich repeat (L 99.2 2.9E-11 6.2E-16 135.4 7.0 200 521-798 96-296 (394)
29 PF14580 LRR_9: Leucine-rich r 99.0 1.5E-10 3.2E-15 110.7 4.8 127 110-260 17-147 (175)
30 KOG1259 Nischarin, modulator o 99.0 4.3E-11 9.4E-16 117.9 1.2 136 586-796 280-416 (490)
31 KOG1909 Ran GTPase-activating 99.0 6.7E-11 1.5E-15 119.8 1.2 187 420-626 90-310 (382)
32 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.3E-15 107.5 5.9 112 133-266 14-126 (175)
33 KOG1909 Ran GTPase-activating 99.0 1.7E-10 3.7E-15 116.9 1.9 242 85-360 27-310 (382)
34 KOG3207 Beta-tubulin folding c 98.9 3.6E-10 7.9E-15 117.6 2.9 195 295-508 141-340 (505)
35 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.2E-15 118.3 0.2 39 541-580 300-340 (505)
36 PF13855 LRR_8: Leucine rich r 98.8 2E-09 4.4E-14 84.4 3.4 60 708-767 2-61 (61)
37 KOG1259 Nischarin, modulator o 98.8 6E-10 1.3E-14 110.0 0.4 134 490-629 280-414 (490)
38 KOG4658 Apoptotic ATPase [Sign 98.8 2.3E-09 4.9E-14 128.0 4.6 282 84-410 519-807 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.8E-14 83.7 3.1 61 731-791 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.8 5.4E-10 1.2E-14 125.2 -1.4 85 709-796 234-322 (414)
41 PF08263 LRRNT_2: Leucine rich 98.7 1.1E-08 2.5E-13 73.2 3.9 42 29-75 2-43 (43)
42 KOG0531 Protein phosphatase 1, 98.7 2.1E-09 4.5E-14 120.5 -0.8 248 372-632 71-323 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 7.3E-08 1.6E-12 115.3 7.0 129 325-456 523-652 (889)
44 KOG4579 Leucine-rich repeat (L 98.5 9.3E-09 2E-13 90.2 -3.0 91 707-800 77-167 (177)
45 KOG1859 Leucine-rich repeat pr 98.4 6E-09 1.3E-13 114.7 -7.3 87 174-265 204-291 (1096)
46 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.7E-13 112.3 -6.8 119 164-289 172-292 (1096)
47 KOG2120 SCF ubiquitin ligase, 98.2 4.5E-08 9.7E-13 97.1 -5.2 35 275-311 337-374 (419)
48 KOG2120 SCF ubiquitin ligase, 98.1 1.4E-07 3E-12 93.7 -4.2 155 350-504 187-348 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.0 4E-06 8.8E-11 82.5 4.2 93 135-240 27-132 (388)
50 KOG2982 Uncharacterized conser 98.0 1.2E-06 2.5E-11 87.3 0.3 64 175-238 93-156 (418)
51 COG5238 RNA1 Ran GTPase-activa 98.0 3.4E-06 7.3E-11 83.0 2.9 141 87-241 29-198 (388)
52 KOG2982 Uncharacterized conser 97.9 5E-06 1.1E-10 82.9 2.3 84 227-310 70-156 (418)
53 KOG4579 Leucine-rich repeat (L 97.9 1.3E-06 2.8E-11 77.0 -1.5 60 566-627 53-113 (177)
54 PF12799 LRR_4: Leucine Rich r 97.9 7.9E-06 1.7E-10 58.5 2.4 35 733-768 3-37 (44)
55 PF12799 LRR_4: Leucine Rich r 97.9 9.8E-06 2.1E-10 58.0 2.7 38 707-745 1-38 (44)
56 PRK15386 type III secretion pr 97.8 7E-05 1.5E-09 80.7 9.6 75 539-625 49-123 (426)
57 KOG4341 F-box protein containi 97.8 1.7E-06 3.6E-11 90.4 -3.0 211 174-384 159-383 (483)
58 KOG3665 ZYG-1-like serine/thre 97.8 9.8E-06 2.1E-10 94.8 2.0 148 88-256 122-278 (699)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.7E-10 94.0 1.1 206 89-331 61-281 (699)
60 PRK15386 type III secretion pr 97.5 0.00026 5.7E-09 76.4 8.3 136 442-601 48-188 (426)
61 KOG1644 U2-associated snRNP A' 97.4 0.00024 5.2E-09 67.5 5.2 87 175-262 60-149 (233)
62 KOG4341 F-box protein containi 97.4 1.5E-05 3.3E-10 83.4 -3.4 38 540-577 399-437 (483)
63 KOG1644 U2-associated snRNP A' 97.3 0.00043 9.3E-09 65.8 5.7 87 178-267 41-127 (233)
64 PF13306 LRR_5: Leucine rich r 97.0 0.0012 2.5E-08 60.8 5.5 8 543-550 104-111 (129)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00056 1.2E-08 68.0 3.1 87 107-216 38-129 (260)
66 PF13306 LRR_5: Leucine rich r 96.9 0.0024 5.3E-08 58.6 6.6 10 468-477 79-88 (129)
67 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.6E-08 65.7 2.0 104 135-259 40-149 (260)
68 KOG1947 Leucine rich repeat pr 95.9 0.0014 3E-08 75.6 -1.4 36 299-334 187-223 (482)
69 KOG2123 Uncharacterized conser 95.8 0.00046 9.9E-09 68.7 -4.9 84 178-266 18-101 (388)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0033 7.2E-08 37.4 0.6 18 757-775 2-19 (22)
71 PF00560 LRR_1: Leucine Rich R 95.7 0.004 8.7E-08 37.0 0.6 19 709-728 2-20 (22)
72 KOG2123 Uncharacterized conser 95.5 0.001 2.3E-08 66.2 -3.7 82 175-259 37-123 (388)
73 KOG1947 Leucine rich repeat pr 95.4 0.0029 6.3E-08 73.0 -1.2 15 539-553 359-373 (482)
74 KOG4308 LRR-containing protein 92.7 0.0013 2.8E-08 74.0 -11.1 87 541-627 203-303 (478)
75 KOG0473 Leucine-rich repeat pr 92.1 0.0086 1.9E-07 58.3 -4.6 84 706-792 41-124 (326)
76 PF13504 LRR_7: Leucine rich r 91.4 0.13 2.8E-06 28.3 1.4 13 204-216 2-14 (17)
77 KOG4308 LRR-containing protein 91.0 0.0032 6.9E-08 70.9 -10.5 187 398-604 88-304 (478)
78 KOG0473 Leucine-rich repeat pr 90.6 0.0052 1.1E-07 59.7 -7.8 92 129-241 33-124 (326)
79 PF13504 LRR_7: Leucine rich r 90.2 0.17 3.6E-06 27.9 1.1 12 709-720 3-14 (17)
80 smart00369 LRR_TYP Leucine-ric 90.1 0.29 6.3E-06 30.3 2.4 21 203-224 2-22 (26)
81 smart00370 LRR Leucine-rich re 90.1 0.29 6.3E-06 30.3 2.4 21 203-224 2-22 (26)
82 smart00369 LRR_TYP Leucine-ric 86.7 0.46 1E-05 29.4 1.7 13 756-768 3-15 (26)
83 smart00370 LRR Leucine-rich re 86.7 0.46 1E-05 29.4 1.7 13 756-768 3-15 (26)
84 PF13516 LRR_6: Leucine Rich r 83.6 0.17 3.8E-06 30.6 -1.3 15 755-769 2-16 (24)
85 smart00365 LRR_SD22 Leucine-ri 76.0 2.1 4.5E-05 26.6 1.7 15 754-768 1-15 (26)
86 KOG3864 Uncharacterized conser 71.0 0.73 1.6E-05 44.6 -1.8 34 566-599 151-185 (221)
87 KOG3864 Uncharacterized conser 68.9 0.93 2E-05 43.8 -1.5 83 180-262 102-185 (221)
88 smart00364 LRR_BAC Leucine-ric 66.7 3.7 8.1E-05 25.4 1.3 12 733-744 4-15 (26)
89 PF02439 Adeno_E3_CR2: Adenovi 65.1 9.7 0.00021 25.8 3.1 29 847-875 6-34 (38)
90 smart00368 LRR_RI Leucine rich 62.3 5.7 0.00012 25.1 1.6 14 755-768 2-15 (28)
91 TIGR00864 PCC polycystin catio 51.6 7.1 0.00015 52.4 1.4 36 761-796 1-36 (2740)
92 PF15102 TMEM154: TMEM154 prot 46.6 9.8 0.00021 34.8 1.1 23 855-877 66-88 (146)
93 KOG4242 Predicted myosin-I-bin 44.9 82 0.0018 35.0 7.8 110 324-434 164-280 (553)
94 PF07204 Orthoreo_P10: Orthore 44.7 18 0.00039 30.0 2.2 29 847-875 41-69 (98)
95 KOG3763 mRNA export factor TAP 40.9 21 0.00046 40.2 2.8 14 373-386 270-283 (585)
96 KOG4242 Predicted myosin-I-bin 39.7 43 0.00094 37.1 4.8 252 372-627 164-453 (553)
97 PF01299 Lamp: Lysosome-associ 36.6 25 0.00053 37.6 2.5 28 853-880 277-304 (306)
98 PF08374 Protocadherin: Protoc 34.4 24 0.00051 34.6 1.7 25 846-870 36-60 (221)
99 KOG3763 mRNA export factor TAP 33.5 29 0.00063 39.2 2.4 43 371-413 242-286 (585)
100 PF08093 Toxin_23: Magi 5 toxi 30.7 40 0.00086 21.4 1.6 18 54-71 3-20 (30)
101 PRK00523 hypothetical protein; 28.8 32 0.00068 27.3 1.2 27 853-879 8-34 (72)
102 PF04478 Mid2: Mid2 like cell 26.6 23 0.0005 32.7 0.2 8 853-860 56-63 (154)
103 TIGR00864 PCC polycystin catio 26.1 38 0.00082 46.1 2.0 33 713-745 1-33 (2740)
104 PRK01844 hypothetical protein; 24.2 41 0.00089 26.7 1.1 22 858-879 12-33 (72)
105 smart00367 LRR_CC Leucine-rich 24.0 53 0.0011 20.1 1.4 11 203-213 2-12 (26)
106 PF12191 stn_TNFRSF12A: Tumour 22.7 40 0.00086 29.9 0.9 21 859-879 90-110 (129)
107 PTZ00382 Variant-specific surf 20.9 43 0.00094 28.6 0.8 17 853-869 71-87 (96)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.9e-75 Score=723.68 Aligned_cols=585 Identities=33% Similarity=0.536 Sum_probs=460.2
Q ss_pred cHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchh
Q 041908 28 LDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPL 107 (883)
Q Consensus 28 ~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 107 (883)
.++|++||++||+++.++ .+.+.+| +. ..+||.|.||+|+.. .+++.|||++|.+.+.++..
T Consensus 27 ~~~~~~~l~~~~~~~~~~------~~~~~~w-~~-~~~~c~w~gv~c~~~----------~~v~~L~L~~~~i~~~~~~~ 88 (968)
T PLN00113 27 HAEELELLLSFKSSINDP------LKYLSNW-NS-SADVCLWQGITCNNS----------SRVVSIDLSGKNISGKISSA 88 (968)
T ss_pred CHHHHHHHHHHHHhCCCC------cccCCCC-CC-CCCCCcCcceecCCC----------CcEEEEEecCCCccccCChH
Confidence 568999999999998532 4567899 33 478999999999753 26899999999999999999
Q ss_pred hcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEcc
Q 041908 108 LTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLS 187 (883)
Q Consensus 108 l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls 187 (883)
+..+++|++|+|++|++.+. +|...+.++++|++|+|++|.+.+.+| .+.+++|++|+|+
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p-------------------~~~l~~L~~L~Ls 148 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIP-------------------RGSIPNLETLDLS 148 (968)
T ss_pred HhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccC-------------------ccccCCCCEEECc
Confidence 99999999999999999876 886556689999999999999988776 2457888888888
Q ss_pred CCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCccccc
Q 041908 188 WNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIET 267 (883)
Q Consensus 188 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~ 267 (883)
+|.+++.+|..++++++|++|++++|.+.+.+| ..++++++|++|++++|.+++.+|
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p---------------------- 205 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSLTNLTSLEFLTLASNQLVGQIP---------------------- 205 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCC-hhhhhCcCCCeeeccCCCCcCcCC----------------------
Confidence 888888888888888888888888888887788 677888888888887777665433
Q ss_pred CCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCC
Q 041908 268 ENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSK 347 (883)
Q Consensus 268 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 347 (883)
..+..+++|++|++++|.+.+.+|..+. ++++
T Consensus 206 --------------------------~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~--------------------- 237 (968)
T PLN00113 206 --------------------------RELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTS--------------------- 237 (968)
T ss_pred --------------------------hHHcCcCCccEEECcCCccCCcCChhHh-cCCC---------------------
Confidence 3444455555556666655555555432 2222
Q ss_pred CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEE
Q 041908 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM 427 (883)
Q Consensus 348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 427 (883)
|++|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus 238 --L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~------------ 302 (968)
T PLN00113 238 --LNHLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE------------ 302 (968)
T ss_pred --CCEEECcCceeccccChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh------------
Confidence 222222223333333444433 55666666666666656666666666666666666655555444
Q ss_pred EccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCC
Q 041908 428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE 507 (883)
Q Consensus 428 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 507 (883)
.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++
T Consensus 303 -------------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 303 -------------LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred -------------hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence 4445556666666666666666666666777777777777777777777777777777777777777
Q ss_pred CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcccc
Q 041908 508 GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN 587 (883)
Q Consensus 508 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 587 (883)
+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|++++.+|..+.
T Consensus 370 ~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 449 (968)
T PLN00113 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449 (968)
T ss_pred eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc
Confidence 77777777777778888888888777777777888888888888888888888888888888899999888888888888
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhh
Q 041908 588 EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAY 667 (883)
Q Consensus 588 ~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (883)
.+++|+.|++++|++.|.+|..+ ..++|+.||+++|++++.+|..+.+
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~------------------------------- 497 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS------------------------------- 497 (968)
T ss_pred cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-------------------------------
Confidence 88899999999999988888765 4588999999999999888876533
Q ss_pred ccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC
Q 041908 668 YNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI 747 (883)
Q Consensus 668 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 747 (883)
++.|+.|||++|+++|.+|..++++++|++|+|++|.++|.+
T Consensus 498 --------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 539 (968)
T PLN00113 498 --------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539 (968)
T ss_pred --------------------------------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccC
Confidence 457889999999999999999999999999999999999999
Q ss_pred CccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcCCCCCC
Q 041908 748 PRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPA 819 (883)
Q Consensus 748 p~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~ 819 (883)
|..++++++|+.|||++|+++|.+|..+.++++|+.+++++|+++|.+|..++|.+|.+.+|.||+++||.+
T Consensus 540 p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.6e-60 Score=589.97 Aligned_cols=516 Identities=32% Similarity=0.534 Sum_probs=461.4
Q ss_pred CCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEE
Q 041908 179 KNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258 (883)
Q Consensus 179 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L 258 (883)
.+++.|+|++|.+++.+|..+..+++|++|+|++|+++|.+|...+.++++|++|++++|.++|.+|.. .++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~----- 140 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIP----- 140 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc---ccC-----
Confidence 478899999999999999999999999999999999998999666679999999999999998877632 222
Q ss_pred EccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccccc
Q 041908 259 QISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLK 338 (883)
Q Consensus 259 ~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 338 (883)
+|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+. ++++|+
T Consensus 141 ------------------~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~---------- 191 (968)
T PLN00113 141 ------------------NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLE---------- 191 (968)
T ss_pred ------------------CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCC----------
Confidence 466677777777778888889999999999999998888887664 455444
Q ss_pred ccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHh
Q 041908 339 GLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL 418 (883)
Q Consensus 339 ~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~ 418 (883)
+|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..+
T Consensus 192 -------------~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l- 256 (968)
T PLN00113 192 -------------FLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL- 256 (968)
T ss_pred -------------eeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH-
Confidence 5555555556677777765 8899999999999988899889999999999999999988888765
Q ss_pred hCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCE
Q 041908 419 TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDV 498 (883)
Q Consensus 419 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 498 (883)
..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 68899999999999999888989999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcC
Q 041908 499 LLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF 578 (883)
Q Consensus 499 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l 578 (883)
|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l 416 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSF 416 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccc
Q 041908 579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV 658 (883)
Q Consensus 579 ~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+.
T Consensus 417 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~----------------------- 473 (968)
T PLN00113 417 SGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG----------------------- 473 (968)
T ss_pred eeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-----------------------
Confidence 999999999999999999999999999999999999999999999999988876431
Q ss_pred ccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeC
Q 041908 659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNL 738 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 738 (883)
.++|+.|||++|+++|.+|..++++++|+.|+|
T Consensus 474 -----------------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 506 (968)
T PLN00113 474 -----------------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506 (968)
T ss_pred -----------------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEEC
Confidence 246788999999999999999999999999999
Q ss_pred CCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC-ccCCCCCCcccCCCcCCC
Q 041908 739 SHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT-KQFANFDESNYRGNLNLC 816 (883)
Q Consensus 739 s~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~gn~~lc 816 (883)
++|++++.+|..++++++|++|||++|+++|.+|..+.++++|+.||+++|+++|.+|.. ..+..+....+.+|+..+
T Consensus 507 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred cCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 999999999999999999999999999999999999999999999999999999999975 344445555667777554
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-42 Score=347.26 Aligned_cols=480 Identities=27% Similarity=0.377 Sum_probs=321.6
Q ss_pred hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCC
Q 041908 175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR 254 (883)
Q Consensus 175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~ 254 (883)
...-..|+.|.+++|.+. .+.+.+.++..|.+|++++|+++ ++| .+++.+..++.|+.++|+++ .+|. ..+.+.+
T Consensus 41 wW~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~ 115 (565)
T KOG0472|consen 41 WWEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS 115 (565)
T ss_pred hhhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence 444556778888888877 45556778888888888888888 777 67888888888888888876 4553 3444444
Q ss_pred CcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccc
Q 041908 255 LEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFN 334 (883)
Q Consensus 255 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~ 334 (883)
|..++.+.| .+. .+|+.++.+..|+.++..+|+++ +.|..++ ++.+|..+++.+
T Consensus 116 l~~l~~s~n-----------------------~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~ 169 (565)
T KOG0472|consen 116 LVKLDCSSN-----------------------ELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEG 169 (565)
T ss_pred hhhhhcccc-----------------------cee-ecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccc
Confidence 444444333 332 35566777778888888888887 6777665 666666666666
Q ss_pred ccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccc
Q 041908 335 NFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELP 414 (883)
Q Consensus 335 n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip 414 (883)
|+++..++....+ +.|++||...|-++ .+|+.++.+.+|+-|++..|++. .+|
T Consensus 170 n~l~~l~~~~i~m-------------------------~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 170 NKLKALPENHIAM-------------------------KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred cchhhCCHHHHHH-------------------------HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 6665543322234 44455554444443 44444555555555555555554 444
Q ss_pred hhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCC
Q 041908 415 KQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFS 494 (883)
Q Consensus 415 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~ 494 (883)
. |.+|..|+++.++.|++.-...+....++++..||+++|++. ..|+.+.-+.+|++||+|+|.++ .+|..++++
T Consensus 223 e--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl- 297 (565)
T KOG0472|consen 223 E--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL- 297 (565)
T ss_pred C--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-
Confidence 2 244455555555555444322222235556666666666665 55666666667777777777776 456667776
Q ss_pred CCCEEECCCCcCCCCCCccccCCC--cccEEe-------cCCCc---------CcCccccccccCCCcCeeecccCcccc
Q 041908 495 NLDVLLMSRNSLEGDVSVPLSNLQ--VARILD-------ISENK---------LYGPLEFSFNHSSSLWHLFLHNNSLNG 556 (883)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~-------Ls~n~---------l~~~~~~~~~~~~~L~~L~L~~n~l~~ 556 (883)
.|+.|.+.||.+...-.+.+..-+ -|++|. ++.-. ..+..| ......+.+.|++++-+++
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt- 375 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLT- 375 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccc-
Confidence 677777777765421111111000 011110 11100 011111 1234557889999999998
Q ss_pred ccchhhhcCCC---CCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcc
Q 041908 557 SIPSALFQSSQ---LMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSC 633 (883)
Q Consensus 557 ~~p~~~~~~~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 633 (883)
.+|...+.... ...++++.|++. ++|..+..+..+.+.-+..|+..+-+|..++.+++|..|++++|.+. .+|..
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence 77887766555 889999999998 78888877777665555555555589999999999999999998774 55654
Q ss_pred cccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEE
Q 041908 634 FTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLD 713 (883)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 713 (883)
++. +..|+.||
T Consensus 454 ~~~---------------------------------------------------------------------lv~Lq~Ln 464 (565)
T KOG0472|consen 454 MGS---------------------------------------------------------------------LVRLQTLN 464 (565)
T ss_pred hhh---------------------------------------------------------------------hhhhheec
Confidence 432 34588999
Q ss_pred ccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCc
Q 041908 714 LSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792 (883)
Q Consensus 714 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~ 792 (883)
+|+|+|. .+|..+..+..|+.+-.++|++....|+.+++|.+|..|||.+|.+. .||+.++++++|+.|++++|+|+
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999998 99999999999998888889999777777999999999999999998 79999999999999999999999
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2e-40 Score=333.71 Aligned_cols=477 Identities=28% Similarity=0.360 Sum_probs=356.3
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccc
Q 041908 89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKC 168 (883)
Q Consensus 89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~ 168 (883)
.++.+++++|.+.. +.+.+.++..|++|++++|++.. .| .+++.+..++.|+.++|++.
T Consensus 46 ~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~~--lp-~aig~l~~l~~l~vs~n~ls----------------- 104 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLSQ--LP-AAIGELEALKSLNVSHNKLS----------------- 104 (565)
T ss_pred chhhhhhccCchhh-ccHhhhcccceeEEEeccchhhh--CC-HHHHHHHHHHHhhcccchHh-----------------
Confidence 46778899988754 56678889999999999999876 77 48889999999998888773
Q ss_pred cchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHh
Q 041908 169 REMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSV 248 (883)
Q Consensus 169 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~ 248 (883)
.+|..++.+.+|+.|+.++|.+. .+|+.++.+..|..++..+|+++ ++| +.++++.+|..|++.+|++. ..|+..
T Consensus 105 -~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~-~l~~~~ 179 (565)
T KOG0472|consen 105 -ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLK-ALPENH 179 (565)
T ss_pred -hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchh-hCCHHH
Confidence 34478888999999999999988 68888999999999999999998 888 77888999999999999988 566565
Q ss_pred hhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCc
Q 041908 249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLE 328 (883)
Q Consensus 249 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 328 (883)
+. ++.|++|+...|.++..++....+.+|+.|++..|++. ..| .|..|..|+++.++.|.+. .+|.....+++++
T Consensus 180 i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l- 254 (565)
T KOG0472|consen 180 IA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSL- 254 (565)
T ss_pred HH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccc-
Confidence 55 88888888777776665555555555555555555554 233 4555555555555555555 5555555444444
Q ss_pred EEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908 329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN 408 (883)
Q Consensus 329 ~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 408 (883)
.+||+.+|++. ..|+.+.. +.+|++||+++|.++ ..|..++++ .|+.|.+.+|.
T Consensus 255 ----------------------~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 255 ----------------------LVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ----------------------eeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc
Confidence 44555555544 45676654 778889999999888 677788888 88999999998
Q ss_pred ccCccchhHhhCCCC--CCEE-------EccCccc--------CCcCcccccCCCCCCeEEccCcccCccccccccCC--
Q 041908 409 FSGELPKQFLTGCVS--LAFM-------NVSHNYF--------GGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA-- 469 (883)
Q Consensus 409 l~~~ip~~~~~~l~~--L~~L-------~Ls~n~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-- 469 (883)
+. +|-..+..+-+. |++| .++...- .....+....+.+.+.|++++-+++....+.|..-
T Consensus 309 lr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~ 387 (565)
T KOG0472|consen 309 LR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKS 387 (565)
T ss_pred hH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhh
Confidence 86 554443321110 1111 1111100 01112223345678889999988885444444322
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
.-.+..+++.|++. .+|..+..+..+.+.-+..|+..+.+|..++.+++|..|++++|.+. .+|..++.+..|+.|++
T Consensus 388 ~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Lnl 465 (565)
T KOG0472|consen 388 EIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNL 465 (565)
T ss_pred cceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecc
Confidence 23788999999998 78888877777665444444555688999999999999999998774 57778888889999999
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
+.|+|. .+|..+..+..++.+-.++|++....|+.+.++.+|..|+|.+|.+. .+|..++++.+|++|++.+|+|.
T Consensus 466 S~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 466 SFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999998 88999888888999999999999777777999999999999999998 78999999999999999999997
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-36 Score=318.76 Aligned_cols=364 Identities=24% Similarity=0.216 Sum_probs=201.7
Q ss_pred CEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCC
Q 041908 231 EYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHN 310 (883)
Q Consensus 231 ~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 310 (883)
+.|++++|++. .+....|.++++|+.+++.+|.++..+.-.....+|+.|+|.+|.|+..-.+.+..++.|+.||||.|
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc
Confidence 33455555444 34444445555555555555554444333344446788888888888777788888888999999998
Q ss_pred CCcCCcchHHHhcCCCCcEEEcccccccccccC-CCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCC
Q 041908 311 NLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHL-PDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSI 389 (883)
Q Consensus 311 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 389 (883)
.++ .+|..-+..-.++++|+|++|.++.+... ...+.+|.+|.|+.|.++. +|.-.++.+++|+.|+|..|++.-.-
T Consensus 160 ~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 160 LIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhccccceeeeh
Confidence 888 67765554456677777777777665322 1244455555555555543 33333333555666666555554222
Q ss_pred CccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCC
Q 041908 390 PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA 469 (883)
Q Consensus 390 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 469 (883)
-..|.++++|+.|.+..|+++ .+.+..|.++.++++|+|+.|++...-...+.+++.|+.|++++|.|...-++++..+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 334555555555555555555 4444445555555555555555555444445555555555555555555555555555
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcccc---ccccCCCcCe
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEF---SFNHSSSLWH 546 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~L~~ 546 (883)
++|++|+|++|.++..-+..|..+..|++|.|++|+++..--..|..+.+|+.|||++|.++..+.. .|.++++|++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 5555555555555554455555555555555555555543334445555555555555555443322 3444555555
Q ss_pred eecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccC
Q 041908 547 LFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG 599 (883)
Q Consensus 547 L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 599 (883)
|++.+|++...--.+|..+..|+.|||.+|.|-..-|..|..+ .|++|.+..
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 5555555553223345555555555555555555555555554 555555443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-36 Score=318.23 Aligned_cols=375 Identities=23% Similarity=0.221 Sum_probs=309.2
Q ss_pred CccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEE
Q 041908 349 DLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMN 428 (883)
Q Consensus 349 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 428 (883)
.-+.|++++|.+...-+..|.. +++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ ++..+-+..++.|+.||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~n-l~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYN-LPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccccCcHHHHhc-CCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 4456777777777666666654 889999999999888 77876666667999999999888 66666667888899999
Q ss_pred ccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCC
Q 041908 429 VSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG 508 (883)
Q Consensus 429 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 508 (883)
||.|.++.+..+.|..-.++++|+|++|+|+..-...|..+.+|..|.|+.|.++...+..|.+++.|+.|+|..|+|.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 99998888777777777789999999999988877888888899999999999986666777889999999999998875
Q ss_pred CCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccC
Q 041908 509 DVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINE 588 (883)
Q Consensus 509 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~ 588 (883)
.--..|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-..++.+++.|+.|+||+|.|...-++.+.-
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 44566888899999999999998888888888899999999999988777778889999999999999998888888888
Q ss_pred CCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhc
Q 041908 589 DSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYY 668 (883)
Q Consensus 589 l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (883)
+++|++|+|++|+++..-++.|..+..|+.|+|++|++...--..|
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---------------------------------- 361 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---------------------------------- 361 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH----------------------------------
Confidence 8999999999999987778888889999999999998752111110
Q ss_pred cccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcc---cccccccCCeeeCCCCcCCc
Q 041908 669 NSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS---AIGYLQELHALNLSHNHLSG 745 (883)
Q Consensus 669 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g 745 (883)
..+++|.+|||++|.|++.|-+ .|.+|+.|+.|+|-+|++..
T Consensus 362 -----------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~ 406 (873)
T KOG4194|consen 362 -----------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS 406 (873)
T ss_pred -----------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee
Confidence 1257888999999999887764 47789999999999999997
Q ss_pred CCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 041908 746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796 (883)
Q Consensus 746 ~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip 796 (883)
+....|..+..||.|||.+|.|..+-|.+|..+ .|+.|-+..-.+-|-+-
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 777889999999999999999998899999988 88888887777666443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=6e-36 Score=331.19 Aligned_cols=463 Identities=27% Similarity=0.309 Sum_probs=240.1
Q ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccccc
Q 041908 90 LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR 169 (883)
Q Consensus 90 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~ 169 (883)
++.|++..|.+-....+.+.+.-+|+.||+++|.+.. .| ..+..+.+|+.|+++.|.+.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~--fp-~~it~l~~L~~ln~s~n~i~------------------ 81 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISS--FP-IQITLLSHLRQLNLSRNYIR------------------ 81 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccccc--CC-chhhhHHHHhhcccchhhHh------------------
Confidence 5555666555444334444444446666666666544 44 34555666666666655542
Q ss_pred chhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhh
Q 041908 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249 (883)
Q Consensus 170 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l 249 (883)
..|.+..++.+|++|.|.+|.+. ..|..+..+++|++||++.|.+. .+| ..+..++.++.+..++|... ..+
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~-----~~l 153 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKI-----QRL 153 (1081)
T ss_pred hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhh-----hhh
Confidence 23355666666666666666665 56666666666666666666666 666 55666666666666666211 011
Q ss_pred hcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcE
Q 041908 250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEF 329 (883)
Q Consensus 250 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 329 (883)
+.. .++.+++..|.+.+.++..+..+.+ .|||++|.+. ... ..++.+|+.
T Consensus 154 g~~------------------------~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~ 203 (1081)
T KOG0618|consen 154 GQT------------------------SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEV 203 (1081)
T ss_pred ccc------------------------cchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhh
Confidence 111 1444555555555555555555544 5666666554 111 124555666
Q ss_pred EEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcc
Q 041908 330 LFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNF 409 (883)
Q Consensus 330 L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 409 (883)
+....|++..+. ...++++.|+.+.|.+....+.-. ..+|++++++.|+++ .+|.+++.+.+|+.++...|++
T Consensus 204 l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~~p~---p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 204 LHCERNQLSELE---ISGPSLTALYADHNPLTTLDVHPV---PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred hhhhhcccceEE---ecCcchheeeeccCcceeeccccc---cccceeeecchhhhh-cchHHHHhcccceEecccchhH
Confidence 666665554432 234555666666666553222211 345666666666665 4456666666666666666666
Q ss_pred cCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCC-CCEEEccCCccCCCcch
Q 041908 410 SGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS-LHILDVSNNMLSGQLPH 488 (883)
Q Consensus 410 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~ls~n~l~~~~p~ 488 (883)
+ .+|..++ ...+|+.|.+.+|.+.. +|+....+++|++|+|..|++....+..+..... |+.|+.+.|++.. .|.
T Consensus 277 ~-~lp~ri~-~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~ 352 (1081)
T KOG0618|consen 277 V-ALPLRIS-RITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPS 352 (1081)
T ss_pred H-hhHHHHh-hhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-ccc
Confidence 4 5555543 45556666666665543 3344445566666666666665333322222222 4444444444442 221
Q ss_pred -hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCC
Q 041908 489 -WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQ 567 (883)
Q Consensus 489 -~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~ 567 (883)
.=...+.|+.|++.+|.++...-..+.+.++|++|+|++|++.......+.++..|++|+|++|+++ .+|..+.++..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence 1112344555555555555544444555555555555555554333334455555555555555555 45555555555
Q ss_pred CCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCc
Q 041908 568 LMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625 (883)
Q Consensus 568 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~ 625 (883)
|++|...+|++. .+| .+..++.|+.+|++.|+++...-..-...++|++||+++|.
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 555555555555 344 44555555555555555542221111112455555555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2e-35 Score=327.05 Aligned_cols=482 Identities=28% Similarity=0.383 Sum_probs=325.0
Q ss_pred EEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccC
Q 041908 183 ELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISR 262 (883)
Q Consensus 183 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~ 262 (883)
.+|++.+.+. .+|..+-.-..++.|+++.|.+- ..|.+.+.+.-+|+.|++++|++. .+|. .+..+..|+.|.++.
T Consensus 2 ~vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~ 77 (1081)
T KOG0618|consen 2 HVDASDEQLE-LIPEQILNNEALQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSR 77 (1081)
T ss_pred CcccccccCc-ccchhhccHHHHHhhhccccccc-cCchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccch
Confidence 3566777766 67766665555888888888766 556556666666888888888776 5553 456667777777777
Q ss_pred cccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccccccccc
Q 041908 263 LQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLH 342 (883)
Q Consensus 263 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~ 342 (883)
|.+...+........|+++.|.+|.+. ..|..+..+.+|++||++.|++. .+|..+. .++.++.+..++|
T Consensus 78 n~i~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N------- 147 (1081)
T KOG0618|consen 78 NYIRSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNN------- 147 (1081)
T ss_pred hhHhhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcc-------
Confidence 776666555555566666666666655 45666666666666666666665 5555543 4555555555554
Q ss_pred CCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCC
Q 041908 343 LPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCV 422 (883)
Q Consensus 343 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~ 422 (883)
.....++. ..++.+++..|.+.+.++..+..++. .|||.+|.+. ... ...+.
T Consensus 148 ----------------~~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~ 199 (1081)
T KOG0618|consen 148 ----------------EKIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLA 199 (1081)
T ss_pred ----------------hhhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhcc
Confidence 11111111 12555666666666666555555544 5666666654 221 24556
Q ss_pred CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECC
Q 041908 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMS 502 (883)
Q Consensus 423 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 502 (883)
+|+.+....|++.... -.-++|+.|+.++|.++...+. ....+|+++++++|+++ .+|++++.+.+|+.++..
T Consensus 200 ~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN 272 (1081)
T ss_pred chhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence 6666666666654321 1345677777777777633222 12357888888888887 566888888888888888
Q ss_pred CCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcC-C-CCCEEeccCCcCCc
Q 041908 503 RNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-S-QLMTLDLRDNEFSG 580 (883)
Q Consensus 503 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-~-~L~~L~Ls~N~l~~ 580 (883)
+|+++ .+|..+...++|+.|++..|.+.- +|....+.++|++|+|..|++. .+|+.+..- . .|+.|..+.|++..
T Consensus 273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~ 349 (1081)
T KOG0618|consen 273 HNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST 349 (1081)
T ss_pred chhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc
Confidence 88884 667777778888888888888754 3445566778888888888886 566654432 2 36777778887773
Q ss_pred cCCcc-ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccc
Q 041908 581 NIPPL-INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE 659 (883)
Q Consensus 581 ~~p~~-l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (883)
.|.. =...+.|+.|++.+|.++...-+.+.+.++|++|+|++|++. .+|+..-
T Consensus 350 -lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~------------------------ 403 (1081)
T KOG0618|consen 350 -LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKL------------------------ 403 (1081)
T ss_pred -cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHH------------------------
Confidence 3321 133567888899999998887778888888999999999885 4554221
Q ss_pred cccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCC
Q 041908 660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLS 739 (883)
Q Consensus 660 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 739 (883)
..++.|++|+||+|+++ .+|.++..+..|++|..-
T Consensus 404 --------------------------------------------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 404 --------------------------------------------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred --------------------------------------------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 11456788899999998 888888889999999999
Q ss_pred CCcCCcCCCccccCcCCCCEEECCCCccccc-CCccccCCCCCcEEEccCCc
Q 041908 740 HNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ-IPLELSELNYLAIFNVSYND 790 (883)
Q Consensus 740 ~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~-ip~~l~~l~~L~~l~ls~N~ 790 (883)
+|++. ..| ++..+++|+.+|+|.|+|+-. +|..+. -++|++||+++|.
T Consensus 439 sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 439 SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 99888 566 788899999999999998743 343333 2788999999886
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.7e-33 Score=293.92 Aligned_cols=326 Identities=26% Similarity=0.350 Sum_probs=239.5
Q ss_pred CCCCcEEeCCCCcCC-CCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCe
Q 041908 372 LPELVYLDMSQNSFE-GSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAW 450 (883)
Q Consensus 372 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 450 (883)
+|.|+.+.+..|++. .-+|..+..+..|+.||||+|++. +.|.. +..-.++-.
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~-------------------------LE~AKn~iV 130 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN-------------------------LEYAKNSIV 130 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchh-------------------------hhhhcCcEE
Confidence 556666666666554 234555555555666666666555 45544 344455556
Q ss_pred EEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcC
Q 041908 451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKL 530 (883)
Q Consensus 451 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 530 (883)
|+|++|+|..+....|.+++.|-+||+|+|++. .+|+.+..+..|++|+|++|.+.-.--..+..+++|++|.+++.+-
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 666666666444445566777777777777776 6666777788888888888876543333455677888888887754
Q ss_pred c-CccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchh
Q 041908 531 Y-GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ 609 (883)
Q Consensus 531 ~-~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~ 609 (883)
+ ..+|.++..+.+|..+|++.|.+. .+|+.+.++++|+.|+||+|+|+ .+....+...+|++|+++.|+++ .+|+.
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence 4 467888999999999999999998 78999999999999999999999 45566677789999999999999 89999
Q ss_pred hcCCCCCCEEEcCCCcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhccee
Q 041908 610 LCHLRKIAIVDISYNLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRV 688 (883)
Q Consensus 610 l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 688 (883)
++.++.|+.|.+.+|+++-. ||+.+++
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGK---------------------------------------------------- 314 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGK---------------------------------------------------- 314 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhh----------------------------------------------------
Confidence 99999999999999988632 4544433
Q ss_pred EEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908 689 EVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768 (883)
Q Consensus 689 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls 768 (883)
+..|+.+..++|.+. .+|+.+..+..|+.|+|++|++. ..|+.+.-|+.|+.|||..|.--
T Consensus 315 -----------------L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 315 -----------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred -----------------hhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 456777888999998 99999999999999999999998 88999999999999999999644
Q ss_pred ccCCccccCCCCCcEEEccCC-----cCcccCCCC
Q 041908 769 GQIPLELSELNYLAIFNVSYN-----DLSGPTPNT 798 (883)
Q Consensus 769 g~ip~~l~~l~~L~~l~ls~N-----~l~g~ip~~ 798 (883)
-..|.-=..-++|+.-|+.+- ++.|..|.+
T Consensus 376 VMPPKP~da~~~lefYNIDFSLq~QlrlAG~~pas 410 (1255)
T KOG0444|consen 376 VMPPKPNDARKKLEFYNIDFSLQHQLRLAGQMPAS 410 (1255)
T ss_pred cCCCCcchhhhcceeeecceehhhHHhhccCCccc
Confidence 222321111245665444432 467766643
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7.7e-33 Score=292.30 Aligned_cols=364 Identities=23% Similarity=0.323 Sum_probs=311.6
Q ss_pred CCccEEEccCCccc-cccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCE
Q 041908 348 RDLLHLVISNNNFI-GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAF 426 (883)
Q Consensus 348 ~~L~~L~ls~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 426 (883)
+-.+-.|+++|.++ +.+|..... +++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+ ..++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence 33456788888888 578888866 899999999999987 89999999999999999999987 555444 57899999
Q ss_pred EEccCcccCC-cCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCc
Q 041908 427 MNVSHNYFGG-QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505 (883)
Q Consensus 427 L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 505 (883)
+++.+|++.. -+|+.+..+..|..|||++|+++ ..|..+...+++-+|++|+|+|..+....|.+++.|-+|||++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 9999998853 37888889999999999999998 778888889999999999999984444556789999999999999
Q ss_pred CCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc-cccchhhhcCCCCCEEeccCCcCCccCCc
Q 041908 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN-GSIPSALFQSSQLMTLDLRDNEFSGNIPP 584 (883)
Q Consensus 506 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~ 584 (883)
+. .+|..+..+..|++|+|++|.+.-.--..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..|+
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPe 239 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPE 239 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchH
Confidence 98 56667899999999999999886544445566788899999987744 358999999999999999999998 7899
Q ss_pred cccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccch
Q 041908 585 LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAI 664 (883)
Q Consensus 585 ~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (883)
.+-++.+|+.|+|++|+|+ .+........+|++|++|.|+++ .+|+++.+
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK---------------------------- 289 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK---------------------------- 289 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh----------------------------
Confidence 9999999999999999998 55666677788999999999997 56766544
Q ss_pred hhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc-ccCcccccccccCCeeeCCCCcC
Q 041908 665 SAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT-GEIPSAIGYLQELHALNLSHNHL 743 (883)
Q Consensus 665 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l 743 (883)
++.|+.|++.+|+++ .-||..||.|.+|+++..++|.+
T Consensus 290 -----------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 290 -----------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred -----------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 456777888899886 36899999999999999999999
Q ss_pred CcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908 744 SGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL 791 (883)
Q Consensus 744 ~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l 791 (883)
. ..|+.+.....|+.|.|++|+|. ..|.++--|+-|++||+..|+=
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 8 89999999999999999999998 6899999999999999999953
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-27 Score=241.59 Aligned_cols=410 Identities=20% Similarity=0.197 Sum_probs=229.2
Q ss_pred CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccC-CcccCccchhHhhCCCCCCE
Q 041908 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSS-NNFSGELPKQFLTGCVSLAF 426 (883)
Q Consensus 348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~ip~~~~~~l~~L~~ 426 (883)
+..++++|..|+++. +|+..++.+++|+.|||++|+|+..-|..|.++.+|..|-+.+ |+|+ .+|...|.++.+++.
T Consensus 67 ~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 355678888888874 4444444589999999999999988899999999988887777 8887 899999999999999
Q ss_pred EEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCC------------CcchhhhCCC
Q 041908 427 MNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSG------------QLPHWVGNFS 494 (883)
Q Consensus 427 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~------------~~p~~~~~l~ 494 (883)
|.+.-|++.......|..++++..|.+.+|.+.......|..+.+++.+.+..|.+.. ..|..++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9999999998888889999999999999999885555578888889999988887421 1222233322
Q ss_pred CCCEEECCCCcCCCCCCccccC-CCcccEEecCCCcCcCccc-cccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908 495 NLDVLLMSRNSLEGDVSVPLSN-LQVARILDISENKLYGPLE-FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD 572 (883)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 572 (883)
...-..+.+.++..+-+..|.. ...+..--.+.+...+.-| ..|..+++|++|+|++|++++.-+.+|.....+++|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 2222223333332222221111 1111111111222222222 2355555566666666665555555555555566666
Q ss_pred ccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCC----CC-
Q 041908 573 LRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD----PF- 647 (883)
Q Consensus 573 Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~----~~- 647 (883)
|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|..|++-.|++...---.+ +..|+.... +-
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w--l~~Wlr~~~~~~~~~C 382 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW--LGEWLRKKSVVGNPRC 382 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH--HHHHHhhCCCCCCCCC
Confidence 66665554444455555566666666666655555555555566666655555532211110 001111111 00
Q ss_pred --CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcc
Q 041908 648 --NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS 725 (883)
Q Consensus 648 --~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~ 725 (883)
.+.+......--.+++......+..........+.......+++..++.....++.++....+++++.+|.++ .+|.
T Consensus 383 q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~ 461 (498)
T KOG4237|consen 383 QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPD 461 (498)
T ss_pred CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCH
Confidence 0000000000000011111111111111111122222233444445555555666666666666777777776 6665
Q ss_pred cccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCC
Q 041908 726 AIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYN 765 (883)
Q Consensus 726 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N 765 (883)
+ .+.+| .+|||+|+++..--..|.++++|.+|-||+|
T Consensus 462 ~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 462 E--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred H--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 5 45555 6666666666555555666666666666554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.6e-22 Score=252.48 Aligned_cols=249 Identities=19% Similarity=0.226 Sum_probs=134.1
Q ss_pred CCCCcEEeCCCCc------CCCCCCccccccC-cccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccC
Q 041908 372 LPELVYLDMSQNS------FEGSIPPSMGYTV-RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMS 444 (883)
Q Consensus 372 l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 444 (883)
+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|++.. ++..+..
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~~~~~~ 632 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LWDGVHS 632 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-ccccccc
Confidence 5566666554432 1223444444433 4666666666554 555543 34566666666665542 3444455
Q ss_pred CCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEe
Q 041908 445 MTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD 524 (883)
Q Consensus 445 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 524 (883)
+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..++.+++|+.|++++|..-+.+|..+ ++++|+.|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 66666666666544444443 4555666666666665555566666666666666666654444555443 556666666
Q ss_pred cCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC-------ccCCccccCCCCCcEEEc
Q 041908 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS-------GNIPPLINEDSNLRALLL 597 (883)
Q Consensus 525 Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~-------~~~p~~l~~l~~L~~L~L 597 (883)
+++|...+.+|.. ..+|+.|++++|.++ .+|..+ .+++|+.|++.++... ...|......++|+.|++
T Consensus 711 Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L 785 (1153)
T PLN03210 711 LSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL 785 (1153)
T ss_pred CCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeC
Confidence 6666544444432 245666666666654 455443 3555666665553211 111111222355666666
Q ss_pred cCCcccccCchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908 598 RGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP 631 (883)
Q Consensus 598 ~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p 631 (883)
++|...+.+|.+++++++|+.|++++|...+.+|
T Consensus 786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred CCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 6666655666666666666666666654433444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=2.3e-22 Score=251.15 Aligned_cols=317 Identities=21% Similarity=0.212 Sum_probs=206.8
Q ss_pred cchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCccccc
Q 041908 364 LPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM 443 (883)
Q Consensus 364 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 443 (883)
+|..+....++|+.|++.++.+. .+|..+ ...+|+.|++.+|++. .++..+ ..+++|+.|+++++.....+| .+.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls 654 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLS 654 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccc
Confidence 44444332234666666666554 445444 3456666666666654 444443 455666666666554333333 355
Q ss_pred CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523 (883)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 523 (883)
.+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|...+.+|.. ..+|+.|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 56666666666665555666666666666677766665444555544 5666777777666554444432 3456667
Q ss_pred ecCCCcCcCccccccccCCCcCeeecccCcc-------ccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEE
Q 041908 524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSL-------NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALL 596 (883)
Q Consensus 524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l-------~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 596 (883)
++++|.+. .+|..+ .+++|++|.+.++.. ....|.....+++|+.|++++|...+.+|.+++++++|+.|+
T Consensus 731 ~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 731 DLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred ecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 77776654 334333 355666666655321 111122233457889999999988888898899999999999
Q ss_pred ccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccc
Q 041908 597 LRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIF 676 (883)
Q Consensus 597 L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 676 (883)
+++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~------------------------------------------- 844 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI------------------------------------------- 844 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-------------------------------------------
Confidence 99887666788766 7889999999987654333321
Q ss_pred cCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCC-CcCCcCCCccccCcC
Q 041908 677 SGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH-NHLSGSIPRSFSNLK 755 (883)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~ 755 (883)
.++++.|+|++|.++ .+|.+++.+++|+.|+|++ |++. .+|..+..++
T Consensus 845 -----------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~ 893 (1153)
T PLN03210 845 -----------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLK 893 (1153)
T ss_pred -----------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCccccccc
Confidence 246788999999998 7898999999999999988 5566 5777888999
Q ss_pred CCCEEECCCCc
Q 041908 756 MIESMDLSYNK 766 (883)
Q Consensus 756 ~L~~LdLs~N~ 766 (883)
.|+.|+++++.
T Consensus 894 ~L~~L~l~~C~ 904 (1153)
T PLN03210 894 HLETVDFSDCG 904 (1153)
T ss_pred CCCeeecCCCc
Confidence 99999999874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=5.8e-22 Score=228.93 Aligned_cols=267 Identities=27% Similarity=0.337 Sum_probs=153.3
Q ss_pred CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY 452 (883)
Q Consensus 373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 452 (883)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|+++.
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lts---------------- 256 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS---------------- 256 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCc----------------
Confidence 34567788888777 5666554 36777777777776 4553 23445555555554443
Q ss_pred ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908 453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532 (883)
Q Consensus 453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 532 (883)
+|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++++
T Consensus 257 ---------LP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 257 ---------LPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred ---------ccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc
Confidence 2211 234555555555554 23332 1345555666665553 232 12456666666666654
Q ss_pred ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH 612 (883)
Q Consensus 533 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~ 612 (883)
. |.. ..+|+.|++++|+++ .+|.. ..+|+.|+|++|++++ +|.. ..+|+.|++++|+++ .+|..
T Consensus 317 L-p~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l--- 380 (788)
T PRK15387 317 L-PAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL--- 380 (788)
T ss_pred C-CCC---cccccccccccCccc-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---
Confidence 2 221 224566666666665 34431 1467777777777773 4443 245666777777776 35543
Q ss_pred CCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908 613 LRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF 692 (883)
Q Consensus 613 l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 692 (883)
..+|+.|++++|++++ +|..
T Consensus 381 ~~~L~~LdLs~N~Lt~-LP~l----------------------------------------------------------- 400 (788)
T PRK15387 381 PSGLKELIVSGNRLTS-LPVL----------------------------------------------------------- 400 (788)
T ss_pred ccccceEEecCCcccC-CCCc-----------------------------------------------------------
Confidence 2456677777776653 3321
Q ss_pred eeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908 693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP 772 (883)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip 772 (883)
.+.|+.||+|+|+|+ .+|... .+|+.|+|++|+|+ .+|..+.++++|+.|||++|+|+|.+|
T Consensus 401 -------------~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 401 -------------PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -------------ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHH
Confidence 124566777777776 456432 34666777777776 567777777777777777777777766
Q ss_pred ccccC
Q 041908 773 LELSE 777 (883)
Q Consensus 773 ~~l~~ 777 (883)
..+..
T Consensus 463 ~~L~~ 467 (788)
T PRK15387 463 QALRE 467 (788)
T ss_pred HHHHH
Confidence 66533
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.9e-21 Score=223.23 Aligned_cols=269 Identities=26% Similarity=0.342 Sum_probs=179.4
Q ss_pred CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEE
Q 041908 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM 427 (883)
Q Consensus 348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 427 (883)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++ .+|. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----ccccccee
Confidence 34568999999997 6888774 58999999999998 56653 589999999999998 6774 24677888
Q ss_pred EccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCC
Q 041908 428 NVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE 507 (883)
Q Consensus 428 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 507 (883)
++++|.+... |. ..++|+.|++++|+++. +|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|+++
T Consensus 268 ~Ls~N~L~~L-p~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhhh-hh---chhhcCEEECcCCcccc-cccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc
Confidence 8888877642 22 12456666666666663 3321 3456666666666653 3321 123445555555554
Q ss_pred CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcccc
Q 041908 508 GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN 587 (883)
Q Consensus 508 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 587 (883)
+ +|. ...+|+.|+|++|+++ .+|.. ..+|+.|++++|++++ +|..
T Consensus 336 ~-LP~---------------------------lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l-- 380 (788)
T PRK15387 336 S-LPT---------------------------LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL-- 380 (788)
T ss_pred c-ccc---------------------------cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc--
Confidence 2 221 1124555555555555 34432 2356666777777663 5543
Q ss_pred CCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhh
Q 041908 588 EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAY 667 (883)
Q Consensus 588 ~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (883)
..+|+.|++++|++++ +|.. .++|+.|++++|++++ +|..
T Consensus 381 -~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---------------------------------- 420 (788)
T PRK15387 381 -PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---------------------------------- 420 (788)
T ss_pred -ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc----------------------------------
Confidence 2457777778777773 5543 3568888888888863 4431
Q ss_pred ccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC
Q 041908 668 YNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI 747 (883)
Q Consensus 668 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 747 (883)
+..|+.|+|++|+|+ .+|..+++++.|+.|+|++|.|+|.+
T Consensus 421 --------------------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 421 --------------------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred --------------------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 123567999999998 88999999999999999999999998
Q ss_pred CccccCcC
Q 041908 748 PRSFSNLK 755 (883)
Q Consensus 748 p~~l~~l~ 755 (883)
|..+..+.
T Consensus 462 ~~~L~~l~ 469 (788)
T PRK15387 462 LQALREIT 469 (788)
T ss_pred HHHHHHHh
Confidence 88875543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=4.7e-23 Score=208.69 Aligned_cols=298 Identities=20% Similarity=0.168 Sum_probs=181.2
Q ss_pred cchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccC-CcCccccChH
Q 041908 169 REMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG-NNFQGSFSLS 247 (883)
Q Consensus 169 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~-n~l~g~~~~~ 247 (883)
.++|..+. +.-++++|..|+|+...|.+|+.+++|+.|||++|+|+ .|..++|.++++|..|-+.+ |+|+ .+|..
T Consensus 59 ~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~ 134 (498)
T KOG4237|consen 59 TEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKG 134 (498)
T ss_pred ccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhh
Confidence 34444332 35577888888888777778888888888888888888 55558888888877776666 7777 67777
Q ss_pred hhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCC
Q 041908 248 VLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL 327 (883)
Q Consensus 248 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L 327 (883)
.|+++..|+.|.+ .-|++.-...+.|..+++|..|.+.+|.+. .++...+..+..+
T Consensus 135 ~F~gL~slqrLll-----------------------Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i 190 (498)
T KOG4237|consen 135 AFGGLSSLQRLLL-----------------------NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAI 190 (498)
T ss_pred HhhhHHHHHHHhc-----------------------ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhcc
Confidence 7777776665544 444455556778888889999999988887 7777666678888
Q ss_pred cEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCcccccc-CcccEEeccC
Q 041908 328 EFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT-VRLLFLDLSS 406 (883)
Q Consensus 328 ~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~ 406 (883)
+.+.+..|.+...-..+ .+.. ++ ...|..++. .....-..+.+.++...-+..|... ..+..=-.+.
T Consensus 191 ~tlhlA~np~icdCnL~----wla~-~~------a~~~ietsg-arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~ 258 (498)
T KOG4237|consen 191 KTLHLAQNPFICDCNLP----WLAD-DL------AMNPIETSG-ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE 258 (498)
T ss_pred chHhhhcCccccccccc----hhhh-HH------hhchhhccc-ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc
Confidence 88888777643221111 1100 00 011111111 1222222222333322222222111 1111111222
Q ss_pred CcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCc
Q 041908 407 NNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL 486 (883)
Q Consensus 407 n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 486 (883)
+...+..|...|.++++|+.|++++|+++++-+..|.....+++|+|..|++...-...|.++..|+.|+|.+|+|+...
T Consensus 259 d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 259 DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 33334556666667777777777777777766666777777777777777766555556666777777777777777666
Q ss_pred chhhhCCCCCCEEECCCCcC
Q 041908 487 PHWVGNFSNLDVLLMSRNSL 506 (883)
Q Consensus 487 p~~~~~l~~L~~L~L~~n~l 506 (883)
|.+|..+..|.+|.+-.|.+
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccccceeeeeehccCcc
Confidence 77777777777777666654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=5.7e-20 Score=214.21 Aligned_cols=247 Identities=23% Similarity=0.346 Sum_probs=154.0
Q ss_pred CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEEC
Q 041908 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM 501 (883)
Q Consensus 422 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 501 (883)
.+...|+++++.++. +|..+ .+.|+.|++++|+++. +|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 346778888877774 34433 2467888888888774 444432 47888888888777 4565443 46777888
Q ss_pred CCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc
Q 041908 502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN 581 (883)
Q Consensus 502 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~ 581 (883)
++|.+. .+|..+. .+|+.|++++|++.. +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-
Confidence 888776 4555443 467777777777763 454332 36777777777776 3554432 357777777777763
Q ss_pred CCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccc
Q 041908 582 IPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHF 661 (883)
Q Consensus 582 ~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (883)
+|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 319 LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--------------------------- 365 (754)
T PRK15370 319 LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--------------------------- 365 (754)
T ss_pred CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---------------------------
Confidence 444332 567777777777764 565543 56777777777665 233211
Q ss_pred cchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCC
Q 041908 662 PAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHN 741 (883)
Q Consensus 662 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 741 (883)
.+.|+.|||++|+|+ .+|..+. ..|+.|++++|
T Consensus 366 --------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N 398 (754)
T PRK15370 366 --------------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRN 398 (754)
T ss_pred --------------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccC
Confidence 134566777777777 4555544 25677777777
Q ss_pred cCCcCCCccc----cCcCCCCEEECCCCccc
Q 041908 742 HLSGSIPRSF----SNLKMIESMDLSYNKLR 768 (883)
Q Consensus 742 ~l~g~ip~~l----~~l~~L~~LdLs~N~Ls 768 (883)
+|+ .+|..+ +.++.+..|++.+|.++
T Consensus 399 ~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 399 NLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Ccc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 776 444433 33466677777777766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.2e-19 Score=211.45 Aligned_cols=203 Identities=23% Similarity=0.302 Sum_probs=110.8
Q ss_pred CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY 452 (883)
Q Consensus 373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 452 (883)
.+...|+++++.++ .+|..+. +.|+.|++++|+++ .+|..++ .+|+.|++++|+++. +|..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence 45788999999888 5676553 57899999999998 7887653 478888888887764 34333 23566677
Q ss_pred ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908 453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532 (883)
Q Consensus 453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 532 (883)
+++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|+++.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc
Confidence 7766666 3444432 35666666666665 3454332 356666666665553 232221 244555555555543
Q ss_pred ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ 603 (883)
Q Consensus 533 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 603 (883)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++
T Consensus 319 -LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 319 -LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred -CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 22111 1344444444444442 333332 34444444444444 2333221 33444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=7.3e-20 Score=199.13 Aligned_cols=181 Identities=24% Similarity=0.235 Sum_probs=83.9
Q ss_pred EEEccCcccCC-cCcccccCCCCCCeEEccCcccCcc----ccccccCCCCCCEEEccCCccCC------CcchhhhCCC
Q 041908 426 FMNVSHNYFGG-QIFPKYMSMTQLAWLYLNDNQFTGR----LEEGLLNAPSLHILDVSNNMLSG------QLPHWVGNFS 494 (883)
Q Consensus 426 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~------~~p~~~~~l~ 494 (883)
.|+|..+.+++ .....+..+..|++++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35566666652 2333344455566666666665432 33344445556666666655541 1223344455
Q ss_pred CCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccc----ccchhhhcC-CCCC
Q 041908 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNG----SIPSALFQS-SQLM 569 (883)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~-~~L~ 569 (883)
+|++|++++|.+.+..+..+..+.. . ++|++|++++|++++ .+...+..+ ++|+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 5555555555554333333322222 0 124444444444431 122233333 4555
Q ss_pred EEeccCCcCCcc----CCccccCCCCCcEEEccCCccccc----CchhhcCCCCCCEEEcCCCcCC
Q 041908 570 TLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGN----IPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 570 ~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.++
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 555555555522 222334444555555555555521 2223334445556666555554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2e-19 Score=195.69 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=135.0
Q ss_pred EEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc----CcccccCCCCCCeEEccCcccCc------cccccccCCC
Q 041908 401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ----IFPKYMSMTQLAWLYLNDNQFTG------RLEEGLLNAP 470 (883)
Q Consensus 401 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~ 470 (883)
.|+|..+.+++.--..++..+.+|+.++++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 5788888887544445567788899999999998653 44456677889999999998872 3445677789
Q ss_pred CCCEEEccCCccCCCcchhhhCCCC---CCEEECCCCcCCCC----CCccccCC-CcccEEecCCCcCcCccccccccCC
Q 041908 471 SLHILDVSNNMLSGQLPHWVGNFSN---LDVLLMSRNSLEGD----VSVPLSNL-QVARILDISENKLYGPLEFSFNHSS 542 (883)
Q Consensus 471 ~L~~L~ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~~----~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~ 542 (883)
+|+.|++++|.+.+..+..+..+.. |++|++++|++++. +...+..+ ++|+.|++++|.+++....
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~------ 155 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE------ 155 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH------
Confidence 9999999999998777777766655 88888888887632 22233344 5555566655555432111
Q ss_pred CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCccccc----CchhhcCCC
Q 041908 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGN----IPQQLCHLR 614 (883)
Q Consensus 543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~----~p~~l~~l~ 614 (883)
.++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..++
T Consensus 156 --------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 156 --------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred --------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 1233344455566666666665532 222334445666666666666532 233455566
Q ss_pred CCCEEEcCCCcCCC
Q 041908 615 KIAIVDISYNLLDG 628 (883)
Q Consensus 615 ~L~~L~ls~N~l~~ 628 (883)
+|+.|++++|++++
T Consensus 222 ~L~~L~ls~n~l~~ 235 (319)
T cd00116 222 SLEVLNLGDNNLTD 235 (319)
T ss_pred CCCEEecCCCcCch
Confidence 77777777776653
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.68 E-value=6.4e-19 Score=158.51 Aligned_cols=182 Identities=25% Similarity=0.480 Sum_probs=154.5
Q ss_pred cCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEE
Q 041908 540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIV 619 (883)
Q Consensus 540 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L 619 (883)
.+...+.|.|++|+++ .+|+.+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4457788889999998 78888999999999999999998 68889999999999999999988 789999999999999
Q ss_pred EcCCCcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccc
Q 041908 620 DISYNLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRY 698 (883)
Q Consensus 620 ~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 698 (883)
|+++|++... +|..|..
T Consensus 108 dltynnl~e~~lpgnff~-------------------------------------------------------------- 125 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFY-------------------------------------------------------------- 125 (264)
T ss_pred hccccccccccCCcchhH--------------------------------------------------------------
Confidence 9999988642 3443321
Q ss_pred ccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCC
Q 041908 699 ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSEL 778 (883)
Q Consensus 699 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l 778 (883)
++.|..|+|+.|.+. .+|..++.+++|+.|.+..|.+- ..|.+++.+++|+.|.+.+|+++ .+|++++++
T Consensus 126 -------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 126 -------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred -------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhh
Confidence 356677999999998 89999999999999999999998 78999999999999999999998 788888876
Q ss_pred CCC---cEEEccCCcCcccCC
Q 041908 779 NYL---AIFNVSYNDLSGPTP 796 (883)
Q Consensus 779 ~~L---~~l~ls~N~l~g~ip 796 (883)
.-. +.+.+.+|++.-+|.
T Consensus 196 ~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 196 DLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhHHHHhhhhCCCCChHH
Confidence 533 456777888876654
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=2.9e-16 Score=183.20 Aligned_cols=118 Identities=37% Similarity=0.664 Sum_probs=106.4
Q ss_pred cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEcc
Q 041908 708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVS 787 (883)
Q Consensus 708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls 787 (883)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCc--cCCCCCCcccCCCcCCCCCCCCCCCC
Q 041908 788 YNDLSGPTPNTK--QFANFDESNYRGNLNLCGPAVLKNCS 825 (883)
Q Consensus 788 ~N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~~~~~c~ 825 (883)
+|+++|.+|..- .+.......+.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 22233455789999999987666774
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-17 Score=149.83 Aligned_cols=164 Identities=27% Similarity=0.466 Sum_probs=130.6
Q ss_pred CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523 (883)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 523 (883)
+++..+.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4566677777777777 45556777788888888888887 67777888888888888888776 677888888888888
Q ss_pred ecCCCcCcC-ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcc
Q 041908 524 DISENKLYG-PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNL 602 (883)
Q Consensus 524 ~Ls~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l 602 (883)
|+.+|++.. ..|..|..++.|+.|+|++|.+. .+|..++++++|+.|.+..|.+. .+|..++.++.|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 888887764 56777777888888888888887 78888888899999999888887 6888888888899999999988
Q ss_pred cccCchhhcCC
Q 041908 603 QGNIPQQLCHL 613 (883)
Q Consensus 603 ~g~~p~~l~~l 613 (883)
+ .+|..++++
T Consensus 186 ~-vlppel~~l 195 (264)
T KOG0617|consen 186 T-VLPPELANL 195 (264)
T ss_pred e-ecChhhhhh
Confidence 8 677766654
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=1e-13 Score=161.80 Aligned_cols=155 Identities=25% Similarity=0.347 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCC----ccceeecCCCCCCCCCCcCCCCCCEEECCCCCCC
Q 041908 26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCC----SWERIKCNVTTANYNNNGSLKQLKILNIGFNSFS 101 (883)
Q Consensus 26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc----~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~ 101 (883)
.+.++|.+||+++|+.+..+ . ..+|. +..|| .|.||.|...... ....++.|+|++|.+.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~------~--~~~W~---g~~C~p~~~~w~Gv~C~~~~~~-----~~~~v~~L~L~~n~L~ 431 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLP------L--RFGWN---GDPCVPQQHPWSGADCQFDSTK-----GKWFIDGLGLDNQGLR 431 (623)
T ss_pred ccCchHHHHHHHHHHhcCCc------c--cCCCC---CCCCCCcccccccceeeccCCC-----CceEEEEEECCCCCcc
Confidence 45678999999999988432 1 24793 23443 7999999632110 0124778888888888
Q ss_pred CCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCC
Q 041908 102 ESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNL 181 (883)
Q Consensus 102 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L 181 (883)
+.+|+.++.+++|++|+|++|.+.+. +| ..++.+++|++|||++|.+.|.+| ..++++++|
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP-~~~~~l~~L~~LdLs~N~lsg~iP-----------------~~l~~L~~L 492 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGN-IP-PSLGSITSLEVLDLSYNSFNGSIP-----------------ESLGQLTSL 492 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCc-CC-hHHhCCCCCCEEECCCCCCCCCCc-----------------hHHhcCCCC
Confidence 88888888888888888888887775 66 466777777777777777776666 666666677
Q ss_pred CEEEccCCcCCCCCCccccCC-CCCCEEEccCCcc
Q 041908 182 VELNLSWNKLDGSLPQCLSNL-TYLRVLDLTSNQL 215 (883)
Q Consensus 182 ~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l 215 (883)
++|+|++|+++|.+|..++.+ .++..+++.+|..
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 777777777666666666542 3455666666543
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.40 E-value=1.5e-14 Score=153.92 Aligned_cols=176 Identities=30% Similarity=0.498 Sum_probs=144.4
Q ss_pred CCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 041908 541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD 620 (883)
Q Consensus 541 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ 620 (883)
+..-...|++.|++. ++|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ .+|..+|.|+ |+.|-
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 344456788888887 78888888888888888888887 78888888889999999999988 7888888887 88888
Q ss_pred cCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccc
Q 041908 621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES 700 (883)
Q Consensus 621 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (883)
+++|+++ .+|..++
T Consensus 150 ~sNNkl~-~lp~~ig----------------------------------------------------------------- 163 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIG----------------------------------------------------------------- 163 (722)
T ss_pred EecCccc-cCCcccc-----------------------------------------------------------------
Confidence 8988886 4444332
Q ss_pred ccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908 701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY 780 (883)
Q Consensus 701 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~ 780 (883)
.+..|..||.|.|++. .+|..++++.+|+.|++.+|++. ..|.++..|+ |..||+|+|+++ .||..|.+|+.
T Consensus 164 ----~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~ 235 (722)
T KOG0532|consen 164 ----LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRH 235 (722)
T ss_pred ----cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhh
Confidence 1356677899999988 88888999999999999999998 5677777665 778999999998 78999999999
Q ss_pred CcEEEccCCcCccc
Q 041908 781 LAIFNVSYNDLSGP 794 (883)
Q Consensus 781 L~~l~ls~N~l~g~ 794 (883)
|++|-|.+|+|.-+
T Consensus 236 Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 236 LQVLQLENNPLQSP 249 (722)
T ss_pred heeeeeccCCCCCC
Confidence 99999999998864
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=4.1e-13 Score=143.21 Aligned_cols=189 Identities=21% Similarity=0.323 Sum_probs=122.2
Q ss_pred EECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcC
Q 041908 499 LLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEF 578 (883)
Q Consensus 499 L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l 578 (883)
.+++.|++. ++|..++.+..|+.+.+..|.+ ..+|..+..+..|+.++|+.|+++ .+|..++.++ |+.|-+++|++
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 344444443 3444444444444444444444 234445555555666666666665 5666666664 77888888887
Q ss_pred CccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccc
Q 041908 579 SGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVV 658 (883)
Q Consensus 579 ~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (883)
+ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+..+
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L--------------------- 211 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL--------------------- 211 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC---------------------
Confidence 7 67777777778888888888877 67778888888888888887775 233322211
Q ss_pred ccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeC
Q 041908 659 EHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNL 738 (883)
Q Consensus 659 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~L 738 (883)
.|..||+|+|+++ .||.+|..|+.|++|-|
T Consensus 212 -------------------------------------------------pLi~lDfScNkis-~iPv~fr~m~~Lq~l~L 241 (722)
T KOG0532|consen 212 -------------------------------------------------PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQL 241 (722)
T ss_pred -------------------------------------------------ceeeeecccCcee-ecchhhhhhhhheeeee
Confidence 2466888888888 88888888888888888
Q ss_pred CCCcCCcCCCcccc---CcCCCCEEECCCCc
Q 041908 739 SHNHLSGSIPRSFS---NLKMIESMDLSYNK 766 (883)
Q Consensus 739 s~N~l~g~ip~~l~---~l~~L~~LdLs~N~ 766 (883)
.+|.|. ..|..+. ...=-++|+..-.+
T Consensus 242 enNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 242 ENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 888888 5565543 22334566666554
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.19 E-value=3.1e-11 Score=135.17 Aligned_cols=199 Identities=32% Similarity=0.486 Sum_probs=121.1
Q ss_pred EEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCC-CcCeeecccCccccccchhhhcCCCCCEEeccCC
Q 041908 498 VLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS-SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN 576 (883)
Q Consensus 498 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N 576 (883)
.+++..|.+...+. .+...+.++.|++.+|.++...+ ...... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 45555555532222 23334556666666666654333 233332 6777777777776 55566777777777777777
Q ss_pred cCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccc
Q 041908 577 EFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL 656 (883)
Q Consensus 577 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (883)
+++ .+|...+..++|+.|++++|++. .+|........|+.+++++|+.. .++..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~---------------------- 228 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSL---------------------- 228 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhh----------------------
Confidence 777 45555546677777777777777 56665555566777777777521 111111
Q ss_pred ccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCee
Q 041908 657 VVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHAL 736 (883)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 736 (883)
..+..+..+.+++|++. .+|..++.++.++.|
T Consensus 229 -----------------------------------------------~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L 260 (394)
T COG4886 229 -----------------------------------------------SNLKNLSGLELSNNKLE-DLPESIGNLSNLETL 260 (394)
T ss_pred -----------------------------------------------hhcccccccccCCceee-eccchhcccccccee
Confidence 11334455667777776 446667777777777
Q ss_pred eCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc
Q 041908 737 NLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE 774 (883)
Q Consensus 737 ~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~ 774 (883)
++++|.++. ++. ++.+.+++.||+++|.++..+|..
T Consensus 261 ~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 261 DLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 777777773 333 777777777777777777665544
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=2.9e-11 Score=135.42 Aligned_cols=200 Identities=32% Similarity=0.475 Sum_probs=162.3
Q ss_pred cEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCC-CCCEEeccCCcCCccCCccccCCCCCcEEEccC
Q 041908 521 RILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS-QLMTLDLRDNEFSGNIPPLINEDSNLRALLLRG 599 (883)
Q Consensus 521 ~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 599 (883)
..++++.|.+...+. .+...+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus 96 ~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 357888887743333 2344578999999999998 6777777774 9999999999998 5667789999999999999
Q ss_pred CcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCC
Q 041908 600 NNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGE 679 (883)
Q Consensus 600 N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 679 (883)
|+++ .+|...+.++.|+.|++++|+++ .+|...
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~--------------------------------------------- 205 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI--------------------------------------------- 205 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhh---------------------------------------------
Confidence 9998 67777768899999999999986 233211
Q ss_pred ChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCE
Q 041908 680 DNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIES 759 (883)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 759 (883)
+....|++|++++|.+. .++..+..+..+..|.+++|++. .+|..++.+++++.
T Consensus 206 ------------------------~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~ 259 (394)
T COG4886 206 ------------------------ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLET 259 (394)
T ss_pred ------------------------hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccce
Confidence 01345788999999765 67778999999999999999998 44788999999999
Q ss_pred EECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 760 MDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 760 LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
|++++|+++. ++. +..+.+++.|++++|.++...|..
T Consensus 260 L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 260 LDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred eccccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence 9999999994 444 889999999999999999877754
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.5e-10 Score=110.68 Aligned_cols=127 Identities=32% Similarity=0.405 Sum_probs=36.9
Q ss_pred CCCCCCEEeCCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccC
Q 041908 110 SLTSLTSLFLEGNNLGVGFKPMKVLP-NLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSW 188 (883)
Q Consensus 110 ~l~~L~~L~Ls~n~l~~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~ 188 (883)
+..++++|+|.+|.++. | +.++ .+.+|+.|||++|.+... +.+..+++|++|++++
T Consensus 17 n~~~~~~L~L~~n~I~~--I--e~L~~~l~~L~~L~Ls~N~I~~l-------------------~~l~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST--I--ENLGATLDKLEVLDLSNNQITKL-------------------EGLPGLPRLKTLDLSN 73 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---------------------TT----TT--EEE--S
T ss_pred ccccccccccccccccc--c--cchhhhhcCCCEEECCCCCCccc-------------------cCccChhhhhhcccCC
Confidence 33445556666665543 2 2344 355666666666655432 2344556666666666
Q ss_pred CcCCCCCCccc-cCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccc--cChHhhhcCCCCcEEEc
Q 041908 189 NKLDGSLPQCL-SNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS--FSLSVLANHSRLEVLQI 260 (883)
Q Consensus 189 n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~--~~~~~l~~l~~L~~L~L 260 (883)
|+|+. +++.+ ..+++|++|++++|+|..--....++.+++|++|++.+|.++.. .....+..+++|+.||-
T Consensus 74 N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 74 NRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp S---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66653 33333 24566666666666655211113455666666666666666522 11234556666666654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=4.3e-11 Score=117.93 Aligned_cols=136 Identities=24% Similarity=0.250 Sum_probs=98.2
Q ss_pred ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchh
Q 041908 586 INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS 665 (883)
Q Consensus 586 l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (883)
+...+.|++++|++|.|+ .+.++..-++.++.|++|+|.+... .++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-----~nL---------------------------- 325 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-----QNL---------------------------- 325 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-----hhh----------------------------
Confidence 344466788888888887 5667777778888888888877511 000
Q ss_pred hhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908 666 AYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745 (883)
Q Consensus 666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 745 (883)
.-+++|+.||||+|.++ .+-.+=..|-+.++|+|+.|.+..
T Consensus 326 --------------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 326 --------------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred --------------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh
Confidence 11567888888888887 444444566778888999998864
Q ss_pred CCCccccCcCCCCEEECCCCcccccC-CccccCCCCCcEEEccCCcCcccCC
Q 041908 746 SIPRSFSNLKMIESMDLSYNKLRGQI-PLELSELNYLAIFNVSYNDLSGPTP 796 (883)
Q Consensus 746 ~ip~~l~~l~~L~~LdLs~N~Lsg~i-p~~l~~l~~L~~l~ls~N~l~g~ip 796 (883)
. ..++.|-+|+.||+++|++.... -..+++|+-|+.+.+-+|++++.+.
T Consensus 367 L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 367 L--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred h--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 3 45788888999999999886432 2467888888999999999988443
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=6.7e-11 Score=119.81 Aligned_cols=187 Identities=21% Similarity=0.293 Sum_probs=88.6
Q ss_pred CCCCCCEEEccCcccCCcCccc----ccCCCCCCeEEccCcccCccc-------------cccccCCCCCCEEEccCCcc
Q 041908 420 GCVSLAFMNVSHNYFGGQIFPK----YMSMTQLAWLYLNDNQFTGRL-------------EEGLLNAPSLHILDVSNNML 482 (883)
Q Consensus 420 ~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-------------~~~~~~l~~L~~L~ls~n~l 482 (883)
+++.|++++||+|.+....++. +..+..|++|+|.+|.+.-.- ......-+.|+++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 4445555555555554433332 234556666666666554111 11123345677777777766
Q ss_pred CCC----cchhhhCCCCCCEEECCCCcCCCC----CCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcc
Q 041908 483 SGQ----LPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554 (883)
Q Consensus 483 ~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 554 (883)
... +...|...+.|+.+.+..|.|... +...+..+++|++|||.+|-++......
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~----------------- 232 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA----------------- 232 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-----------------
Confidence 432 223455556666666666655421 1123445555555555555554221111
Q ss_pred ccccchhhhcCCCCCEEeccCCcCCccCCccc-----cCCCCCcEEEccCCccccc----CchhhcCCCCCCEEEcCCCc
Q 041908 555 NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI-----NEDSNLRALLLRGNNLQGN----IPQQLCHLRKIAIVDISYNL 625 (883)
Q Consensus 555 ~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~g~----~p~~l~~l~~L~~L~ls~N~ 625 (883)
+...+..+++|+.|++++|.+...-...+ ...++|+.|.+.+|.++.. +...+...+.|..|+|++|.
T Consensus 233 ---LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 233 ---LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ---HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 12223333444444444444443222111 1235555555555555421 22233445666666666666
Q ss_pred C
Q 041908 626 L 626 (883)
Q Consensus 626 l 626 (883)
+
T Consensus 310 l 310 (382)
T KOG1909|consen 310 L 310 (382)
T ss_pred c
Confidence 6
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=4.3e-10 Score=107.46 Aligned_cols=112 Identities=29% Similarity=0.369 Sum_probs=39.3
Q ss_pred CCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhc-CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEcc
Q 041908 133 VLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARIC-ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLT 211 (883)
Q Consensus 133 ~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 211 (883)
.+.+..++++|+|++|.+... +.++ .+.+|+.|+|++|.|+. + +.+..+++|++|+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I-------------------e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~ 72 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI-------------------ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLS 72 (175)
T ss_dssp -----------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--
T ss_pred ccccccccccccccccccccc-------------------cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccC
Confidence 466677788999999887532 3454 47788999999998884 3 357788899999999
Q ss_pred CCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccc
Q 041908 212 SNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIE 266 (883)
Q Consensus 212 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~ 266 (883)
+|+++ .++......+++|++|++++|++...-....++.+++|++|++.+|++.
T Consensus 73 ~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 73 NNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99988 6762223468889999999998874434455677777777777777664
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.97 E-value=1.7e-10 Score=116.91 Aligned_cols=242 Identities=24% Similarity=0.221 Sum_probs=135.6
Q ss_pred cCCCCCCEEECCCCCCCCC----CchhhcCCCCCCEEeCCCCCCCCC---CCC------CCCCCCCCCCCEEECCCCCCC
Q 041908 85 GSLKQLKILNIGFNSFSES----LVPLLTSLTSLTSLFLEGNNLGVG---FKP------MKVLPNLRNLEVLDLSGNGLI 151 (883)
Q Consensus 85 ~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~---~ip------~~~l~~l~~L~~L~Ls~n~l~ 151 (883)
.....+++++||+|.|... +.+.+.+-+.|+..++++-- +|- .+| .+++...++|++||||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456789999999998643 56667788899998888642 221 023 123456678899999998886
Q ss_pred CccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCC-------------CccccCCCCCCEEEccCCccccc
Q 041908 152 GSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSL-------------PQCLSNLTYLRVLDLTSNQLSGN 218 (883)
Q Consensus 152 ~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-------------p~~l~~l~~L~~L~Ls~n~l~~~ 218 (883)
...+ ..+..-+.++..|++|.|.+|.+.-.- ....+.-++|+++..+.|++. .
T Consensus 106 ~~g~-------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle-n 171 (382)
T KOG1909|consen 106 PKGI-------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE-N 171 (382)
T ss_pred ccch-------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc-c
Confidence 5443 233345677888888888888774211 112344567777777777765 3
Q ss_pred cCh----hhhcCCCCCCEEeccCCcCc--cc-cChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCcc
Q 041908 219 LPI----SVFANLTSLEYLSLSGNNFQ--GS-FSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT 291 (883)
Q Consensus 219 ip~----~~~~~l~~L~~L~L~~n~l~--g~-~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 291 (883)
-+. ..|...+.|+.+.+..|.+. |. .-...+..++.|++|||..|.++..... .
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~-------------------~ 232 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV-------------------A 232 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-------------------H
Confidence 221 34556667777777777654 11 2223455666666666655554432110 1
Q ss_pred CchhhhcCCCCCEEEccCCCCcCC----cchHHHhcCCCCcEEEccccccccccc-----CCCCCCCccEEEccCCcc
Q 041908 292 IPSFLQYQYDLRYIDLSHNNLAGT----FPTWLLQNNTKLEFLFLFNNFLKGLLH-----LPDSKRDLLHLVISNNNF 360 (883)
Q Consensus 292 ~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~L~~L~ls~n~l 360 (883)
+...+..+++|+.|++++|.+... +-..+....+.|++|.+.+|.++.-.. .....+.|+.|++++|.+
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 122333444455555555444321 112222234555555555555442210 011356666677777766
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.6e-10 Score=117.61 Aligned_cols=195 Identities=22% Similarity=0.173 Sum_probs=103.6
Q ss_pred hhhcCCCCCEEEccCCCCcCCcc-hHHHhcCCCCcEEEcccccccccccCC--CCCCCccEEEccCCccccccchhhhcC
Q 041908 295 FLQYQYDLRYIDLSHNNLAGTFP-TWLLQNNTKLEFLFLFNNFLKGLLHLP--DSKRDLLHLVISNNNFIGMLPDNFGMI 371 (883)
Q Consensus 295 ~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~L~~L~ls~n~l~~~~p~~~~~~ 371 (883)
....|++++.|||++|-+....| ..+.+.+++|+.|+++.|++.....-. ..++.|+.|.++.|.++..--..+...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 45567777777777776653222 123446677777777777665432211 245667777777777664433333334
Q ss_pred CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccch-hHhhCCCCCCEEEccCcccCCcCcccccCCCCCCe
Q 041908 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPK-QFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAW 450 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 450 (883)
+|+|+.|++..|.....-......+..|++|||++|++. ..+. .....++.|..|+++.+.+...-.+...
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~------- 292 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE------- 292 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCcc-------
Confidence 677777777777422222233344556777777777665 2221 1223455555555555554432111110
Q ss_pred EEccCcccCccccccccCCCCCCEEEccCCccCCC-cchhhhCCCCCCEEECCCCcCCC
Q 041908 451 LYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQ-LPHWVGNFSNLDVLLMSRNSLEG 508 (883)
Q Consensus 451 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~ 508 (883)
.-+-...+++|++|++..|++... .-..+..+++|+.|.+..|.++.
T Consensus 293 -----------s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 293 -----------SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred -----------chhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 000123346677777777776421 11224445667777777776654
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.9e-10 Score=118.35 Aligned_cols=39 Identities=18% Similarity=0.108 Sum_probs=19.3
Q ss_pred CCCcCeeecccCccccccc--hhhhcCCCCCEEeccCCcCCc
Q 041908 541 SSSLWHLFLHNNSLNGSIP--SALFQSSQLMTLDLRDNEFSG 580 (883)
Q Consensus 541 ~~~L~~L~L~~n~l~~~~p--~~~~~~~~L~~L~Ls~N~l~~ 580 (883)
.++|+.|++..|++. ..+ ..+..+.+|+.|.+..|.++.
T Consensus 300 f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 300 FPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence 345555555555553 111 123344556666666666653
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2e-09 Score=84.45 Aligned_cols=60 Identities=42% Similarity=0.593 Sum_probs=36.2
Q ss_pred cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcc
Q 041908 708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767 (883)
Q Consensus 708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~L 767 (883)
+|+.|++++|+|+...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445566666666666666666655555666666666666666654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6e-10 Score=110.02 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=104.3
Q ss_pred hhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCC
Q 041908 490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLM 569 (883)
Q Consensus 490 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~ 569 (883)
+.....|+++||++|.|+ .+.++..-.++++.|++|+|.+.... .+..+++|+.|||++|.++ .+..+-..+-+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence 344467888999999887 45666777788999999999886543 3677888999999999887 5666666778889
Q ss_pred EEeccCCcCCccCCccccCCCCCcEEEccCCcccccC-chhhcCCCCCCEEEcCCCcCCCC
Q 041908 570 TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI-PQQLCHLRKIAIVDISYNLLDGS 629 (883)
Q Consensus 570 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~-p~~l~~l~~L~~L~ls~N~l~~~ 629 (883)
+|.|+.|.+... +.++.+-+|..|++++|+|...- -..+++++.|+.+.|.+|++.+.
T Consensus 356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999988743 56777888999999999887422 23578889999999999998754
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.82 E-value=2.3e-09 Score=128.03 Aligned_cols=282 Identities=24% Similarity=0.271 Sum_probs=162.7
Q ss_pred CcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccc
Q 041908 84 NGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNN--LGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKL 161 (883)
Q Consensus 84 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L 161 (883)
..+...+|+..+-+|.+... +.. ..++.|++|-+.+|. +.. ++.+.|..++.|++|||++|.=.+.+|
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~--is~~ff~~m~~LrVLDLs~~~~l~~LP------ 588 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLE--ISGEFFRSLPLLRVLDLSGNSSLSKLP------ 588 (889)
T ss_pred ccchhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhh--cCHHHHhhCcceEEEECCCCCccCcCC------
Confidence 33445677788777776432 111 234479999998886 433 554568889999999999987767776
Q ss_pred hhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCc
Q 041908 162 ELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241 (883)
Q Consensus 162 ~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 241 (883)
..++.+-+|++|+|+++.+. .+|..++++.+|.+|++..+.-...+| .....+++|++|.+......
T Consensus 589 -----------~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~ 655 (889)
T KOG4658|consen 589 -----------SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALS 655 (889)
T ss_pred -----------hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccc
Confidence 89999999999999999998 799999999999999999887654566 66777999999999776522
Q ss_pred -cccChHhhhcCCCCcEEEccCcccccCCCCCCCCccc----eEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCc
Q 041908 242 -GSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQL----KVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTF 316 (883)
Q Consensus 242 -g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 316 (883)
+..-...+.++..|+.+....... ...........| +.+.+.++.. ...+..+..+.+|+.|.+.++.+....
T Consensus 656 ~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 656 NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCchhh
Confidence 122223444555555544432221 000011111111 1222222221 123344555666666666666554211
Q ss_pred chHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCcccccc
Q 041908 317 PTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYT 396 (883)
Q Consensus 317 p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 396 (883)
..+ ....+.++ .++++..+.+.++..... +.+. ...++|+.|.+..+.....+.+....+
T Consensus 734 ~~~----~~~~~~~~--------------~f~~l~~~~~~~~~~~r~-l~~~-~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 734 IEW----EESLIVLL--------------CFPNLSKVSILNCHMLRD-LTWL-LFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred ccc----ccccchhh--------------hHHHHHHHHhhccccccc-cchh-hccCcccEEEEecccccccCCCHHHHh
Confidence 111 01111110 011222222222222111 1111 125777888887777665665566666
Q ss_pred CcccEEeccCCccc
Q 041908 397 VRLLFLDLSSNNFS 410 (883)
Q Consensus 397 ~~L~~L~Ls~n~l~ 410 (883)
..++.+.+..+.+.
T Consensus 794 ~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 794 LELKELILPFNKLE 807 (889)
T ss_pred hhcccEEecccccc
Confidence 66666555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=2.7e-09 Score=83.74 Aligned_cols=61 Identities=41% Similarity=0.561 Sum_probs=57.4
Q ss_pred ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908 731 QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL 791 (883)
Q Consensus 731 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l 791 (883)
++|++|++++|+++...+..|.++++|++||+++|+++...|.+|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999988778999999999999999999998889999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=5.4e-10 Score=125.24 Aligned_cols=85 Identities=24% Similarity=0.278 Sum_probs=57.9
Q ss_pred ccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc---CCcc-ccCCCCCcEE
Q 041908 709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ---IPLE-LSELNYLAIF 784 (883)
Q Consensus 709 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~---ip~~-l~~l~~L~~l 784 (883)
|+.+++++|++. .++..+..+..+..|+++.|+++.. ..+.....+..+.++.|.+... .... ......+..+
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 567788888887 5556667777888888888887754 3355666777777777776522 1121 4556677788
Q ss_pred EccCCcCcccCC
Q 041908 785 NVSYNDLSGPTP 796 (883)
Q Consensus 785 ~ls~N~l~g~ip 796 (883)
.+.+|......+
T Consensus 311 ~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 311 TLELNPIRKISS 322 (414)
T ss_pred ccccCccccccc
Confidence 888887777555
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.72 E-value=1.1e-08 Score=73.15 Aligned_cols=42 Identities=31% Similarity=0.710 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCccceeecC
Q 041908 29 DNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCN 75 (883)
Q Consensus 29 ~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~w~gv~C~ 75 (883)
++|++||++||+++..+ +.+.+.+|......+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~-----~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNND-----PSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-S-----C-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccc-----cCcccccCCCcCCCCCeeeccEEeC
Confidence 68999999999999642 2468999943223799999999996
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.70 E-value=2.1e-09 Score=120.49 Aligned_cols=248 Identities=23% Similarity=0.226 Sum_probs=160.7
Q ss_pred CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL 451 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 451 (883)
+..++.+.+..|.+.. +-..+..+++|+.|++.+|++. .+... ...+++|++|++++|.|+... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 4555555566666552 2333556667777777777766 33331 245677777777777776543 33456668888
Q ss_pred EccCcccCccccccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcC
Q 041908 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP-HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKL 530 (883)
Q Consensus 452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 530 (883)
++.+|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 8888887743 334557888888888888875433 2 46788888888988887642 2344455566668888887
Q ss_pred cCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccccc---Cc
Q 041908 531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN---IP 607 (883)
Q Consensus 531 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~---~p 607 (883)
+...+.......+|+.+++++|.+. .++..+..+..+..+++.+|++... ..+.....+..+....|++... ..
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 6544321111113889999999887 4445667788899999999988754 2344556677777777776532 11
Q ss_pred hh-hcCCCCCCEEEcCCCcCCCCCCc
Q 041908 608 QQ-LCHLRKIAIVDISYNLLDGSIPS 632 (883)
Q Consensus 608 ~~-l~~l~~L~~L~ls~N~l~~~~p~ 632 (883)
.. ....+.++.+.+..|......+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccccccCcccccccc
Confidence 11 45667788888888877655443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.57 E-value=7.3e-08 Score=115.32 Aligned_cols=129 Identities=26% Similarity=0.297 Sum_probs=75.7
Q ss_pred CCCcEEEcccccccccccCCCCCCCccEEEccCCcc-ccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEe
Q 041908 325 TKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNF-IGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLD 403 (883)
Q Consensus 325 ~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l-~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 403 (883)
...+...+-+|.+..+... ..++.|++|-+..|.- ...++..++..++.|+.||+++|.--+.+|..++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3444555555544433211 1333566666666642 3345555545567777777776665566777777777777777
Q ss_pred ccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCc
Q 041908 404 LSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456 (883)
Q Consensus 404 Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 456 (883)
+++..+. .+|..+ ..+..|.+|++..+.-...++.....+++|++|.+..-
T Consensus 602 L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 7777766 666665 46666777777666544444455555666776666544
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.47 E-value=9.3e-09 Score=90.22 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=69.1
Q ss_pred ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEc
Q 041908 707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNV 786 (883)
Q Consensus 707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~l 786 (883)
+..+.|+|++|+|+ .+|.++..++.|+.||++.|.|. ..|+.+..|.+|.+||.-.|.+. +||..+---+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 45677888899888 88888888999999999999888 56777788888888888888886 66655432234455666
Q ss_pred cCCcCcccCCCCcc
Q 041908 787 SYNDLSGPTPNTKQ 800 (883)
Q Consensus 787 s~N~l~g~ip~~~~ 800 (883)
.++++.+..|...|
T Consensus 154 gnepl~~~~~~klq 167 (177)
T KOG4579|consen 154 GNEPLGDETKKKLQ 167 (177)
T ss_pred cCCcccccCccccc
Confidence 77788877776544
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=6e-09 Score=114.70 Aligned_cols=87 Identities=33% Similarity=0.368 Sum_probs=40.9
Q ss_pred hhcCCCCCCEEEccCCcCCCCCCc-cccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcC
Q 041908 174 RICELKNLVELNLSWNKLDGSLPQ-CLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANH 252 (883)
Q Consensus 174 ~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l 252 (883)
.+..|++|++|||++|.+. .+|. ....+. |+.|.+++|.++ ++- .+.+|++|+.||+++|-+.+.-....+..+
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL~--gie~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hhh--hHHhhhhhhccchhHhhhhcchhhhHHHHH
Confidence 4445555555555555554 2221 122222 555555555554 333 345555555555555555443333334444
Q ss_pred CCCcEEEccCccc
Q 041908 253 SRLEVLQISRLQI 265 (883)
Q Consensus 253 ~~L~~L~L~~~~~ 265 (883)
..|+.|+|.+|.+
T Consensus 279 s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 279 SSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHhhcCCcc
Confidence 4455555555443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.2e-08 Score=112.27 Aligned_cols=119 Identities=28% Similarity=0.273 Sum_probs=92.8
Q ss_pred hcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccc
Q 041908 164 LNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGS 243 (883)
Q Consensus 164 ~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~ 243 (883)
.+|.+..+..++.-++.|++|||++|+++.. +.+..+++|++|||+.|.+. .+|.-....+. |+.|.+++|.++.
T Consensus 172 syN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 172 SYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT- 246 (1096)
T ss_pred chhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-
Confidence 3777777778888899999999999999854 37888999999999999999 88844444555 9999999999873
Q ss_pred cChHhhhcCCCCcEEEccCcccccCC--CCCCCCccceEEEcccCcCC
Q 041908 244 FSLSVLANHSRLEVLQISRLQIETEN--FPWLPRFQLKVLNLRRCNIS 289 (883)
Q Consensus 244 ~~~~~l~~l~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~n~l~ 289 (883)
...+.++++|+.||+++|-+.... .+...+..|++|+|.+|.+.
T Consensus 247 --L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 247 --LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred --hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 235788999999999998876532 23344456777778777664
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.5e-08 Score=97.14 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=20.5
Q ss_pred CccceEEEcccCcCCccCchh---hhcCCCCCEEEccCCC
Q 041908 275 RFQLKVLNLRRCNISGTIPSF---LQYQYDLRYIDLSHNN 311 (883)
Q Consensus 275 ~~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~ 311 (883)
...|++|.++.|.. .+|.. +...+.|.+||+.++-
T Consensus 337 f~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 34455666666543 34443 3566778888877653
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=1.4e-07 Score=93.72 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=75.5
Q ss_pred ccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCC-cccCccchhHhhCCCCCCEEE
Q 041908 350 LLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSN-NFSGELPKQFLTGCVSLAFMN 428 (883)
Q Consensus 350 L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~ 428 (883)
|+++|+++-.++..--..+...|.+|+.|.+.++++...+...+....+|+.|+++.+ .++..--.-++..|+.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4444554444433222223233667777777777777666666677777777777765 333222233456677777777
Q ss_pred ccCcccCCcCcccc--cCCCCCCeEEccCcccC---ccccccccCCCCCCEEEccCCc-cCCCcchhhhCCCCCCEEECC
Q 041908 429 VSHNYFGGQIFPKY--MSMTQLAWLYLNDNQFT---GRLEEGLLNAPSLHILDVSNNM-LSGQLPHWVGNFSNLDVLLMS 502 (883)
Q Consensus 429 Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~L~ 502 (883)
++.|.+........ .--++|+.|+++++.-. ..+..-...+++|..||+++|. ++...-..|..++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 77765543321110 01234555555554211 0111112334555555555443 222222334444455555544
Q ss_pred CC
Q 041908 503 RN 504 (883)
Q Consensus 503 ~n 504 (883)
.|
T Consensus 347 RC 348 (419)
T KOG2120|consen 347 RC 348 (419)
T ss_pred hh
Confidence 44
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=4e-06 Score=82.45 Aligned_cols=93 Identities=26% Similarity=0.324 Sum_probs=52.2
Q ss_pred CCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcC---CCCCC-------ccccCCCC
Q 041908 135 PNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL---DGSLP-------QCLSNLTY 204 (883)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~p-------~~l~~l~~ 204 (883)
..+..+..+|||+|.|...-. +.+...+.+-.+|+..+++.-.. ...++ +++.+|++
T Consensus 27 ~~~d~~~evdLSGNtigtEA~-------------e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~ 93 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAM-------------EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPR 93 (388)
T ss_pred HhhcceeEEeccCCcccHHHH-------------HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCc
Confidence 345666777777776644322 11113344556667666665311 11122 23456777
Q ss_pred CCEEEccCCccccccCh---hhhcCCCCCCEEeccCCcC
Q 041908 205 LRVLDLTSNQLSGNLPI---SVFANLTSLEYLSLSGNNF 240 (883)
Q Consensus 205 L~~L~Ls~n~l~~~ip~---~~~~~l~~L~~L~L~~n~l 240 (883)
|+..+||+|.+....|. +.++.-+.|++|.+++|.+
T Consensus 94 l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 94 LQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 77777777776655552 2355666777777777765
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=1.2e-06 Score=87.30 Aligned_cols=64 Identities=33% Similarity=0.359 Sum_probs=30.0
Q ss_pred hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCC
Q 041908 175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN 238 (883)
Q Consensus 175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n 238 (883)
+.+++.|++|+|+.|.+...|...=..+.+|++|-|.+..+...--...+..+|.++.|.++.|
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 4456666666666665553322111234455555555554432222233444455555555544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=3.4e-06 Score=82.98 Aligned_cols=141 Identities=19% Similarity=0.236 Sum_probs=78.9
Q ss_pred CCCCCEEECCCCCCCCC----CchhhcCCCCCCEEeCCCCCCCCC--CCC------CCCCCCCCCCCEEECCCCCCCCcc
Q 041908 87 LKQLKILNIGFNSFSES----LVPLLTSLTSLTSLFLEGNNLGVG--FKP------MKVLPNLRNLEVLDLSGNGLIGSL 154 (883)
Q Consensus 87 l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~--~ip------~~~l~~l~~L~~L~Ls~n~l~~~~ 154 (883)
+..++.+|||+|.|... +...+.+-.+|+..++++-..... .+| ..++.+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 55678888998888754 444555667788877776422110 011 124556777777777777776655
Q ss_pred ccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCC----CCc---------cccCCCCCCEEEccCCccccccCh
Q 041908 155 TMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGS----LPQ---------CLSNLTYLRVLDLTSNQLSGNLPI 221 (883)
Q Consensus 155 ~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~---------~l~~l~~L~~L~Ls~n~l~~~ip~ 221 (883)
| ..+..-++.-+.|++|.+++|.+.-. +-. ...+-|.|++.+...|++. ..|.
T Consensus 109 ~-------------e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~ 174 (388)
T COG5238 109 P-------------EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSK 174 (388)
T ss_pred c-------------hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcH
Confidence 5 22224456667777777777765311 111 1223466666666666655 3331
Q ss_pred h----hhcCCCCCCEEeccCCcCc
Q 041908 222 S----VFANLTSLEYLSLSGNNFQ 241 (883)
Q Consensus 222 ~----~~~~l~~L~~L~L~~n~l~ 241 (883)
. .+..-.+|+.+.+..|.|.
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcC
Confidence 1 1222245566666665554
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=5e-06 Score=82.92 Aligned_cols=84 Identities=25% Similarity=0.248 Sum_probs=46.0
Q ss_pred CCCCCEEeccCCcCccccC-hHhhhcCCCCcEEEccCcccccCCCCC-CCCccceEEEcccCcCCcc-CchhhhcCCCCC
Q 041908 227 LTSLEYLSLSGNNFQGSFS-LSVLANHSRLEVLQISRLQIETENFPW-LPRFQLKVLNLRRCNISGT-IPSFLQYQYDLR 303 (883)
Q Consensus 227 l~~L~~L~L~~n~l~g~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~ 303 (883)
.+.++.|||.+|.++.--. ...+.+++.|+.|+++.|++....... .+..+|++|-|.+..+.-. ....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4556666666666652111 123556666666666666655544333 4555677777766665422 223444555556
Q ss_pred EEEccCC
Q 041908 304 YIDLSHN 310 (883)
Q Consensus 304 ~L~Ls~n 310 (883)
.|.+|.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666555
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=1.3e-06 Score=77.03 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=30.1
Q ss_pred CCCCEEeccCCcCCccCCccc-cCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908 566 SQLMTLDLRDNEFSGNIPPLI-NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 566 ~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
..|+..+|++|.+.. +|..| ...+.++.|++++|+++ .+|+.+..++.|+.++++.|++.
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 344444555555552 23222 33345555555555555 45555555555555555555553
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=7.9e-06 Score=58.52 Aligned_cols=35 Identities=37% Similarity=0.669 Sum_probs=14.5
Q ss_pred CCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908 733 LHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768 (883)
Q Consensus 733 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls 768 (883)
|++|+|++|+|+ .+|..+++|++|+.||+++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 444444444444 23333444444444444444443
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=9.8e-06 Score=58.05 Aligned_cols=38 Identities=39% Similarity=0.670 Sum_probs=32.9
Q ss_pred ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908 707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745 (883)
Q Consensus 707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 745 (883)
++|++|++++|+|+ .+|.++++|++|++|++++|+++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 36899999999999 778889999999999999999984
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=7e-05 Score=80.71 Aligned_cols=75 Identities=13% Similarity=0.263 Sum_probs=44.4
Q ss_pred ccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCE
Q 041908 539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI 618 (883)
Q Consensus 539 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~ 618 (883)
..+.+++.|++++|.++ .+|. -..+|+.|.++++.--..+|..+ .++|++|++++|.....+|. +|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 34567778888888776 4551 23467888887754333556544 24677777777732224443 3555
Q ss_pred EEcCCCc
Q 041908 619 VDISYNL 625 (883)
Q Consensus 619 L~ls~N~ 625 (883)
|+++.+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6665543
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=1.7e-06 Score=90.41 Aligned_cols=211 Identities=19% Similarity=0.062 Sum_probs=105.0
Q ss_pred hhcCCCCCCEEEccCCc-CCCCCCccc-cCCCCCCEEEccCC-ccccccChhhhcCCCCCCEEeccCCc-CccccChHhh
Q 041908 174 RICELKNLVELNLSWNK-LDGSLPQCL-SNLTYLRVLDLTSN-QLSGNLPISVFANLTSLEYLSLSGNN-FQGSFSLSVL 249 (883)
Q Consensus 174 ~l~~l~~L~~L~Ls~n~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~ip~~~~~~l~~L~~L~L~~n~-l~g~~~~~~l 249 (883)
....++++++|++.++. ++...-..+ ..+++|++|++..| .++...-......+++|++|+++.+. ++|.--....
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 34567888888888775 222111122 35788888888885 34422221234567888888888764 3331111345
Q ss_pred hcCCCCcEEEccCcccccCC---CCCCCCccceEEEcccCcCCccCc--hhhhcCCCCCEEEccCCCC-cCCcchHHHhc
Q 041908 250 ANHSRLEVLQISRLQIETEN---FPWLPRFQLKVLNLRRCNISGTIP--SFLQYQYDLRYIDLSHNNL-AGTFPTWLLQN 323 (883)
Q Consensus 250 ~~l~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~Ls~n~l-~~~~p~~~~~~ 323 (883)
.+++.++.+.+.+|.-.... .....+..+.++++..|....... ..-..+..|+.++.+++.. +...-..+.++
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~ 318 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH 318 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence 55666666655544321110 011122234555555654321111 1123466777777777543 32333345556
Q ss_pred CCCCcEEEcccccc-cc--cccCCCCCCCccEEEccCCcccccc-chhhhcCCCCCcEEeCCCCc
Q 041908 324 NTKLEFLFLFNNFL-KG--LLHLPDSKRDLLHLVISNNNFIGML-PDNFGMILPELVYLDMSQNS 384 (883)
Q Consensus 324 l~~L~~L~L~~n~l-~~--~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~~l~~L~~L~L~~n~ 384 (883)
..+|++|.++.++- +. +..+..+++.|+.+++..+...... -......++.|+.+.++.|.
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 77777777776652 11 1112234555555555555432211 11122234555555555443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=9.8e-06 Score=94.84 Aligned_cols=148 Identities=26% Similarity=0.340 Sum_probs=71.3
Q ss_pred CCCCEEECCCCCC-CCCCchhhcC-CCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhc
Q 041908 88 KQLKILNIGFNSF-SESLVPLLTS-LTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLN 165 (883)
Q Consensus 88 ~~L~~L~Ls~n~l-~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~ 165 (883)
.+|++||+++... ....|..++. +|+|++|.+++-.+....+- ....++++|+.||+|+.+++..
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl------------ 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL------------ 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc------------
Confidence 3566666666442 2223344433 56666666666554332111 1334566666666666655332
Q ss_pred ccccchhhhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCccccccC------hhhhcCCCCCCEEeccCC
Q 041908 166 NKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVLDLTSNQLSGNLP------ISVFANLTSLEYLSLSGN 238 (883)
Q Consensus 166 n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip------~~~~~~l~~L~~L~L~~n 238 (883)
..++++++|+.|.+.+=.+.. ..-..+.+|++|++||+|..... ..+ .+.-..||+|+.||.+++
T Consensus 189 -------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 189 -------SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred -------HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCc
Confidence 345556666666555544432 11123455666666666654432 111 011123556666666665
Q ss_pred cCccccChHhhhcCCCCc
Q 041908 239 NFQGSFSLSVLANHSRLE 256 (883)
Q Consensus 239 ~l~g~~~~~~l~~l~~L~ 256 (883)
.+.+.+-...+...++|+
T Consensus 261 di~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 261 DINEEILEELLNSHPNLQ 278 (699)
T ss_pred chhHHHHHHHHHhCccHh
Confidence 555433333333333333
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.67 E-value=1.2e-05 Score=93.99 Aligned_cols=206 Identities=24% Similarity=0.284 Sum_probs=110.5
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCC-C--C----------CCCCCCCEEECCCCCCCCccc
Q 041908 89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMK-V--L----------PNLRNLEVLDLSGNGLIGSLT 155 (883)
Q Consensus 89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~-~--l----------~~l~~L~~L~Ls~n~l~~~~~ 155 (883)
+++..++.+.......-..+.... |+.|.|.+-.....+.-.. . + ..-.+|++||+++.....
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s--- 136 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS--- 136 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh---
Confidence 445555555544444444444444 7777776543322100000 0 0 012567777777754321
Q ss_pred cccccchhhcccccchhhhhcC-CCCCCEEEccCCcCCCC-CCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEE
Q 041908 156 MQGEKLELLNNKCREMNARICE-LKNLVELNLSWNKLDGS-LPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYL 233 (883)
Q Consensus 156 ~~l~~L~~~~n~~~~~~~~l~~-l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 233 (883)
.+.+..++. +|+|+.|.+++-.+... .-.-..++++|..||+|+.+++ .+ ..+++|++|+.|
T Consensus 137 -------------~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 137 -------------NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVL 200 (699)
T ss_pred -------------ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHH
Confidence 112244443 77788887777655422 1223456777888888887777 44 367777777777
Q ss_pred eccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCc
Q 041908 234 SLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLA 313 (883)
Q Consensus 234 ~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 313 (883)
.+.+-.+...-....+-++++|++||+|........ .+....-+.-..+++|+.||.|++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-----------------~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-----------------KIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccch-----------------HHHHHHHHhcccCccccEEecCCcchh
Confidence 777766654333445666777777777654432211 000000111224678888888887777
Q ss_pred CCcchHHHhcCCCCcEEE
Q 041908 314 GTFPTWLLQNNTKLEFLF 331 (883)
Q Consensus 314 ~~~p~~~~~~l~~L~~L~ 331 (883)
+.+-+.+...-++|+.+.
T Consensus 264 ~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 264 EEILEELLNSHPNLQQIA 281 (699)
T ss_pred HHHHHHHHHhCccHhhhh
Confidence 666555554455555443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.52 E-value=0.00026 Score=76.38 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=85.2
Q ss_pred ccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCC-cCCCCCCccccCCCcc
Q 041908 442 YMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRN-SLEGDVSVPLSNLQVA 520 (883)
Q Consensus 442 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L 520 (883)
+..+.+++.|++++|.++. +|. -.++|+.|.+++|.-...+|..+ .++|++|++++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 3456889999999998774 452 23469999998865544667655 358899999988 443 4443 46
Q ss_pred cEEecCCCcCc--CccccccccCCCcCeeecccCccc--cccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEE
Q 041908 521 RILDISENKLY--GPLEFSFNHSSSLWHLFLHNNSLN--GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALL 596 (883)
Q Consensus 521 ~~L~Ls~n~l~--~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 596 (883)
+.|+++.+... +.+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|+
T Consensus 115 e~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 115 RSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSIT 183 (426)
T ss_pred ceEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEE
Confidence 77777766542 2233 35677777543311 011211 1257888998888765 3444333 5788888
Q ss_pred ccCCc
Q 041908 597 LRGNN 601 (883)
Q Consensus 597 L~~N~ 601 (883)
++.|.
T Consensus 184 ls~n~ 188 (426)
T PRK15386 184 LHIEQ 188 (426)
T ss_pred ecccc
Confidence 87763
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00024 Score=67.48 Aligned_cols=87 Identities=30% Similarity=0.392 Sum_probs=40.2
Q ss_pred hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccC-hhhhcCCCCCCEEeccCCcCccc--cChHhhhc
Q 041908 175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP-ISVFANLTSLEYLSLSGNNFQGS--FSLSVLAN 251 (883)
Q Consensus 175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~L~~n~l~g~--~~~~~l~~ 251 (883)
+..++.|..|.|++|+|+.+-|.--.-+++|+.|.|.+|.+. .+. ...+..++.|++|.+-+|..+.. .-...+..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~k 138 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYK 138 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcccCceeEEEEe
Confidence 444555555555555555333332233445555555555544 111 11344555566666655554411 11123444
Q ss_pred CCCCcEEEccC
Q 041908 252 HSRLEVLQISR 262 (883)
Q Consensus 252 l~~L~~L~L~~ 262 (883)
+++|+.||..+
T Consensus 139 lp~l~~LDF~k 149 (233)
T KOG1644|consen 139 LPSLRTLDFQK 149 (233)
T ss_pred cCcceEeehhh
Confidence 55555555443
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.35 E-value=1.5e-05 Score=83.40 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=20.0
Q ss_pred cCCCcCeeecccCccc-cccchhhhcCCCCCEEeccCCc
Q 041908 540 HSSSLWHLFLHNNSLN-GSIPSALFQSSQLMTLDLRDNE 577 (883)
Q Consensus 540 ~~~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~Ls~N~ 577 (883)
....|+.+.|+++..+ ...-+.+..+++|+.+++-.++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 3445555666665532 2223344556666666666654
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.29 E-value=0.00043 Score=65.84 Aligned_cols=87 Identities=26% Similarity=0.302 Sum_probs=59.2
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcE
Q 041908 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV 257 (883)
Q Consensus 178 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~ 257 (883)
+.+...+||++|.+.. -+.|..++.|.+|.+++|+|+ .|....-.-+++|+.|.|.+|++..--...-+..+++|+.
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3466788888888752 234777888888888888888 5553444556778888888888763333344666667777
Q ss_pred EEccCccccc
Q 041908 258 LQISRLQIET 267 (883)
Q Consensus 258 L~L~~~~~~~ 267 (883)
|.+-+|+++.
T Consensus 118 Ltll~Npv~~ 127 (233)
T KOG1644|consen 118 LTLLGNPVEH 127 (233)
T ss_pred eeecCCchhc
Confidence 6666665543
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.98 E-value=0.0012 Score=60.77 Aligned_cols=8 Identities=13% Similarity=0.136 Sum_probs=2.3
Q ss_pred CcCeeecc
Q 041908 543 SLWHLFLH 550 (883)
Q Consensus 543 ~L~~L~L~ 550 (883)
.++.+.+.
T Consensus 104 ~l~~i~~~ 111 (129)
T PF13306_consen 104 NLKEINIP 111 (129)
T ss_dssp T--EEE-T
T ss_pred CceEEEEC
Confidence 44444444
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00056 Score=67.99 Aligned_cols=87 Identities=31% Similarity=0.340 Sum_probs=49.2
Q ss_pred hhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCC--CCCCccccccccchhhcccccchhhhhcCCCCCCEE
Q 041908 107 LLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN--GLIGSLTMQGEKLELLNNKCREMNARICELKNLVEL 184 (883)
Q Consensus 107 ~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n--~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L 184 (883)
..-.+..|+.|.+.+..++.. ..+..|++|+.|++|.| +..+.++ .....+++|++|
T Consensus 38 l~d~~~~le~ls~~n~gltt~----~~~P~Lp~LkkL~lsdn~~~~~~~l~-----------------vl~e~~P~l~~l 96 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTL----TNFPKLPKLKKLELSDNYRRVSGGLE-----------------VLAEKAPNLKVL 96 (260)
T ss_pred ccccccchhhhhhhccceeec----ccCCCcchhhhhcccCCcccccccce-----------------ehhhhCCceeEE
Confidence 334445555566666655432 35666777777777777 4433332 233445777777
Q ss_pred EccCCcCCCCCCcc---ccCCCCCCEEEccCCccc
Q 041908 185 NLSWNKLDGSLPQC---LSNLTYLRVLDLTSNQLS 216 (883)
Q Consensus 185 ~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~ 216 (883)
+|+.|++.. ++. +..+.+|..||+..|..+
T Consensus 97 ~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 97 NLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred eecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 777777652 222 344555666666666544
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.87 E-value=0.0024 Score=58.61 Aligned_cols=10 Identities=30% Similarity=0.590 Sum_probs=3.8
Q ss_pred CCCCCCEEEc
Q 041908 468 NAPSLHILDV 477 (883)
Q Consensus 468 ~l~~L~~L~l 477 (883)
.+++|+.+++
T Consensus 79 ~~~~l~~i~~ 88 (129)
T PF13306_consen 79 NCTNLKNIDI 88 (129)
T ss_dssp T-TTECEEEE
T ss_pred cccccccccc
Confidence 3344444444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.0012 Score=65.74 Aligned_cols=104 Identities=25% Similarity=0.305 Sum_probs=64.3
Q ss_pred CCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCC--cCCCCCCccccCCCCCCEEEccC
Q 041908 135 PNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWN--KLDGSLPQCLSNLTYLRVLDLTS 212 (883)
Q Consensus 135 ~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~ 212 (883)
..+..|+.|.+.+..++.. ..+..+++|++|.+|.| ++.+.++....++++|++|++++
T Consensus 40 d~~~~le~ls~~n~gltt~-------------------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-------------------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred ccccchhhhhhhccceeec-------------------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC
Confidence 3455666666655555332 44666788888888888 66666665566678888888888
Q ss_pred Ccccc--ccChhhhcCCCCCCEEeccCCcCcccc--ChHhhhcCCCCcEEE
Q 041908 213 NQLSG--NLPISVFANLTSLEYLSLSGNNFQGSF--SLSVLANHSRLEVLQ 259 (883)
Q Consensus 213 n~l~~--~ip~~~~~~l~~L~~L~L~~n~l~g~~--~~~~l~~l~~L~~L~ 259 (883)
|++.. +++ .+..+.+|..|++.+|..+..- ....+.-+++|++|+
T Consensus 101 Nki~~lstl~--pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 101 NKIKDLSTLR--PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred Cccccccccc--hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 87761 222 3556667778888777655311 112344455555554
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.91 E-value=0.0014 Score=75.62 Aligned_cols=36 Identities=22% Similarity=-0.052 Sum_probs=16.1
Q ss_pred CCCCCEEEccCCCCcCCc-chHHHhcCCCCcEEEccc
Q 041908 299 QYDLRYIDLSHNNLAGTF-PTWLLQNNTKLEFLFLFN 334 (883)
Q Consensus 299 l~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~L~~ 334 (883)
++.|+.+.+.++.-.... -..+...++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 456666666555322111 112223455555555554
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.82 E-value=0.00046 Score=68.66 Aligned_cols=84 Identities=27% Similarity=0.260 Sum_probs=61.6
Q ss_pred CCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcE
Q 041908 178 LKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEV 257 (883)
Q Consensus 178 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~ 257 (883)
+.+.+.|++-+|.++.+ .-..+++.|++|.||-|.|+ ++. .+..|++|++|+|..|.|...-....+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 55677788888887743 23457888888888888888 554 57888888888888888874434456777777877
Q ss_pred EEccCcccc
Q 041908 258 LQISRLQIE 266 (883)
Q Consensus 258 L~L~~~~~~ 266 (883)
|.|..|...
T Consensus 93 LWL~ENPCc 101 (388)
T KOG2123|consen 93 LWLDENPCC 101 (388)
T ss_pred HhhccCCcc
Confidence 777766543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.78 E-value=0.0033 Score=37.37 Aligned_cols=18 Identities=44% Similarity=0.639 Sum_probs=7.9
Q ss_pred CCEEECCCCcccccCCccc
Q 041908 757 IESMDLSYNKLRGQIPLEL 775 (883)
Q Consensus 757 L~~LdLs~N~Lsg~ip~~l 775 (883)
|++|||++|+++ .||.++
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 344433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.004 Score=37.02 Aligned_cols=19 Identities=53% Similarity=0.732 Sum_probs=8.9
Q ss_pred ccEEEccCCcCcccCccccc
Q 041908 709 MTGLDLSSNELTGEIPSAIG 728 (883)
Q Consensus 709 L~~LdLs~N~l~g~ip~~l~ 728 (883)
|++|||++|+|+ .||.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 344555555554 4444443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.50 E-value=0.001 Score=66.18 Aligned_cols=82 Identities=30% Similarity=0.273 Sum_probs=60.3
Q ss_pred hcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccC-hhhhcCCCCCCEEeccCCcCccccCh----Hhh
Q 041908 175 ICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLP-ISVFANLTSLEYLSLSGNNFQGSFSL----SVL 249 (883)
Q Consensus 175 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~L~~n~l~g~~~~----~~l 249 (883)
..+++.|+.|.||-|+|+..- .+..|++|++|+|..|.|. .+. ...+.++++|+.|.|..|.-.|..+. ..+
T Consensus 37 c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 456888888999988887543 3778888999999998887 443 23567888899999988876654432 356
Q ss_pred hcCCCCcEEE
Q 041908 250 ANHSRLEVLQ 259 (883)
Q Consensus 250 ~~l~~L~~L~ 259 (883)
.-+++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6777777665
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.41 E-value=0.0029 Score=72.97 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=8.4
Q ss_pred ccCCCcCeeecccCc
Q 041908 539 NHSSSLWHLFLHNNS 553 (883)
Q Consensus 539 ~~~~~L~~L~L~~n~ 553 (883)
..++.++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 445555555555555
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.65 E-value=0.0013 Score=73.95 Aligned_cols=87 Identities=26% Similarity=0.265 Sum_probs=47.9
Q ss_pred CCCcCeeecccCcccccc----chhhhcCCC-CCEEeccCCcCCcc----CCccccCC-CCCcEEEccCCcccccCc---
Q 041908 541 SSSLWHLFLHNNSLNGSI----PSALFQSSQ-LMTLDLRDNEFSGN----IPPLINED-SNLRALLLRGNNLQGNIP--- 607 (883)
Q Consensus 541 ~~~L~~L~L~~n~l~~~~----p~~~~~~~~-L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~L~~N~l~g~~p--- 607 (883)
..++++|++++|.++... ...+...++ +..+++.+|++.+. ....+..+ ..++.++++.|.|+..-.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 445666666666655221 122333334 55567777766643 12233333 556777777777764433
Q ss_pred -hhhcCCCCCCEEEcCCCcCC
Q 041908 608 -QQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 608 -~~l~~l~~L~~L~ls~N~l~ 627 (883)
..+..++.++.+.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 33445667777777777665
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.15 E-value=0.0086 Score=58.28 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=69.4
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN 785 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ 785 (883)
+...+.||+|.|++. ..-..|.-++.|..||+|.|++. ..|..++.+..+..+++..|.++ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 456678999999887 55566777888888999999887 77888898888999998888887 6788888888898888
Q ss_pred ccCCcCc
Q 041908 786 VSYNDLS 792 (883)
Q Consensus 786 ls~N~l~ 792 (883)
+-.|.|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 8888764
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.38 E-value=0.13 Score=28.29 Aligned_cols=13 Identities=54% Similarity=0.851 Sum_probs=4.5
Q ss_pred CCCEEEccCCccc
Q 041908 204 YLRVLDLTSNQLS 216 (883)
Q Consensus 204 ~L~~L~Ls~n~l~ 216 (883)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.98 E-value=0.0032 Score=70.90 Aligned_cols=187 Identities=22% Similarity=0.169 Sum_probs=97.3
Q ss_pred cccEEeccCCcccCccchhH---hhCCCCCCEEEccCcccCCcCcccc----cCC-CCCCeEEccCcccCccccccccCC
Q 041908 398 RLLFLDLSSNNFSGELPKQF---LTGCVSLAFMNVSHNYFGGQIFPKY----MSM-TQLAWLYLNDNQFTGRLEEGLLNA 469 (883)
Q Consensus 398 ~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~~l 469 (883)
.+..+++.+|.+.......+ +...+.|+.|+++.|.+.+.-...+ ... ..+++|++..|.++..-.
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~------ 161 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGA------ 161 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccch------
Confidence 36777888887764433222 2345566666777766653221111 111 234444444444442211
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCC----CCCc----cccCCCcccEEecCCCcCcCccc----cc
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG----DVSV----PLSNLQVARILDISENKLYGPLE----FS 537 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~----~l~~l~~L~~L~Ls~n~l~~~~~----~~ 537 (883)
+.+.+.+.....++.++++.|.+.. .++. .+....++++|++++|.++...- ..
T Consensus 162 --------------~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~ 227 (478)
T KOG4308|consen 162 --------------APLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEV 227 (478)
T ss_pred --------------HHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHH
Confidence 0222333334444444444444321 1111 12235566666776666552211 12
Q ss_pred cccCCC-cCeeecccCccccc----cchhhhcC-CCCCEEeccCCcCCccCC----ccccCCCCCcEEEccCCcccc
Q 041908 538 FNHSSS-LWHLFLHNNSLNGS----IPSALFQS-SQLMTLDLRDNEFSGNIP----PLINEDSNLRALLLRGNNLQG 604 (883)
Q Consensus 538 ~~~~~~-L~~L~L~~n~l~~~----~p~~~~~~-~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g 604 (883)
+...+. +.++++..|++.+. ..+.+..+ ..+++++++.|.|+..-. ..+..++.++++.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 233334 66688888877643 23334444 567888888888876543 344566788888888888864
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.55 E-value=0.0052 Score=59.74 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEE
Q 041908 129 KPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVL 208 (883)
Q Consensus 129 ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 208 (883)
+|...+.....-+.||++.|++...- ..+.-++.|..||++.|.+. ..|..++.+..++.+
T Consensus 33 ~~v~ei~~~kr~tvld~~s~r~vn~~------------------~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~ 93 (326)
T KOG0473|consen 33 IPVREIASFKRVTVLDLSSNRLVNLG------------------KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNA 93 (326)
T ss_pred cchhhhhccceeeeehhhhhHHHhhc------------------cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHH
Confidence 44445555666666666666552211 23444566666777777665 567777777777777
Q ss_pred EccCCccccccChhhhcCCCCCCEEeccCCcCc
Q 041908 209 DLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241 (883)
Q Consensus 209 ~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 241 (883)
++..|..+ ..| .+++..+.++++++-+|.+.
T Consensus 94 ~~~~n~~~-~~p-~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 94 ASHKNNHS-QQP-KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred Hhhccchh-hCC-ccccccCCcchhhhccCcch
Confidence 77777766 667 56777777777777776654
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.17 E-value=0.17 Score=27.86 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=4.4
Q ss_pred ccEEEccCCcCc
Q 041908 709 MTGLDLSSNELT 720 (883)
Q Consensus 709 L~~LdLs~N~l~ 720 (883)
|+.|||++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444555555444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.09 E-value=0.29 Score=30.30 Aligned_cols=21 Identities=57% Similarity=0.805 Sum_probs=12.4
Q ss_pred CCCCEEEccCCccccccChhhh
Q 041908 203 TYLRVLDLTSNQLSGNLPISVF 224 (883)
Q Consensus 203 ~~L~~L~Ls~n~l~~~ip~~~~ 224 (883)
++|++|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5664443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.09 E-value=0.29 Score=30.30 Aligned_cols=21 Identities=57% Similarity=0.805 Sum_probs=12.4
Q ss_pred CCCCEEEccCCccccccChhhh
Q 041908 203 TYLRVLDLTSNQLSGNLPISVF 224 (883)
Q Consensus 203 ~~L~~L~Ls~n~l~~~ip~~~~ 224 (883)
++|++|+|++|+++ .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5664443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.72 E-value=0.46 Score=29.40 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=5.7
Q ss_pred CCCEEECCCCccc
Q 041908 756 MIESMDLSYNKLR 768 (883)
Q Consensus 756 ~L~~LdLs~N~Ls 768 (883)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.72 E-value=0.46 Score=29.40 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=5.7
Q ss_pred CCCEEECCCCccc
Q 041908 756 MIESMDLSYNKLR 768 (883)
Q Consensus 756 ~L~~LdLs~N~Ls 768 (883)
+|++|+|++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=83.60 E-value=0.17 Score=30.64 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=6.7
Q ss_pred CCCCEEECCCCcccc
Q 041908 755 KMIESMDLSYNKLRG 769 (883)
Q Consensus 755 ~~L~~LdLs~N~Lsg 769 (883)
++|++|||++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.98 E-value=2.1 Score=26.56 Aligned_cols=15 Identities=47% Similarity=0.733 Sum_probs=11.0
Q ss_pred cCCCCEEECCCCccc
Q 041908 754 LKMIESMDLSYNKLR 768 (883)
Q Consensus 754 l~~L~~LdLs~N~Ls 768 (883)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 456778888888775
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.98 E-value=0.73 Score=44.56 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=15.6
Q ss_pred CCCCEEeccCCc-CCccCCccccCCCCCcEEEccC
Q 041908 566 SQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRG 599 (883)
Q Consensus 566 ~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~ 599 (883)
++|+.|+|++|. ||..--.++..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 345555555443 4433333444555555555443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.89 E-value=0.93 Score=43.85 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=47.3
Q ss_pred CCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhc-CCCCCCEEeccCCcCccccChHhhhcCCCCcEE
Q 041908 180 NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFA-NLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVL 258 (883)
Q Consensus 180 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L 258 (883)
.++.+|-++..|...--+.+.+++.++.|.+.+|.--+..-.+-++ -.++|+.|++++|.=-.+-....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3566777777666555556667777777777776422111111111 246777777777652224444556666666666
Q ss_pred EccC
Q 041908 259 QISR 262 (883)
Q Consensus 259 ~L~~ 262 (883)
.+..
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5544
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=66.71 E-value=3.7 Score=25.39 Aligned_cols=12 Identities=50% Similarity=0.780 Sum_probs=5.8
Q ss_pred CCeeeCCCCcCC
Q 041908 733 LHALNLSHNHLS 744 (883)
Q Consensus 733 L~~L~Ls~N~l~ 744 (883)
|+.|+.|+|+|+
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444445555444
No 89
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=65.06 E-value=9.7 Score=25.84 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=15.5
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 041908 847 VAFNWSFAVSYVTVIVGLLALLFLNSYWH 875 (883)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (883)
..+.+++.+|+++.+..++...+++|+.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34455666666666555555444444433
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=62.32 E-value=5.7 Score=25.08 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=8.9
Q ss_pred CCCCEEECCCCccc
Q 041908 755 KMIESMDLSYNKLR 768 (883)
Q Consensus 755 ~~L~~LdLs~N~Ls 768 (883)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45666777776664
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=51.62 E-value=7.1 Score=52.39 Aligned_cols=36 Identities=22% Similarity=0.113 Sum_probs=18.2
Q ss_pred ECCCCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 041908 761 DLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796 (883)
Q Consensus 761 dLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip 796 (883)
||++|+|+...+..|..+++|+.|+|++|++.|-|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 345555554444444555555555555555555444
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=46.64 E-value=9.8 Score=34.79 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHhhccccce
Q 041908 855 VSYVTVIVGLLALLFLNSYWHRQ 877 (883)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~ 877 (883)
+.++++++.+++++++.||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 55555555555556666777764
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=44.88 E-value=82 Score=35.04 Aligned_cols=110 Identities=18% Similarity=0.061 Sum_probs=48.6
Q ss_pred CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhh--cCCCCCcEEeCCCCcCCCCCCccccc---cCc
Q 041908 324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG--MILPELVYLDMSQNSFEGSIPPSMGY---TVR 398 (883)
Q Consensus 324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~---l~~ 398 (883)
-+.+++++++.|.+..-..+--. ...--+.++.|..+...-..+. ..-..+.+++++.|.....+|..+.. ...
T Consensus 164 npr~r~~dls~npi~dkvpihl~-~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLP-QPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred cchhhhhccCCCcccccCCcccc-CCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 34566777777766443211100 0000144445544332211110 00124667777777766666654322 234
Q ss_pred ccEEeccCCcccCc--cchhHhhCCCCCCEEEccCccc
Q 041908 399 LLFLDLSSNNFSGE--LPKQFLTGCVSLAFMNVSHNYF 434 (883)
Q Consensus 399 L~~L~Ls~n~l~~~--ip~~~~~~l~~L~~L~Ls~n~l 434 (883)
++.++.+.-.+.-. ....++...+.++..+++.|..
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 55555555443211 1112222334566666666543
No 94
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=44.72 E-value=18 Score=30.02 Aligned_cols=29 Identities=0% Similarity=-0.117 Sum_probs=20.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHhhcccc
Q 041908 847 VAFNWSFAVSYVTVIVGLLALLFLNSYWH 875 (883)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (883)
.|.|++.|.|++++++++..+.+++.+|+
T Consensus 41 yWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 41 YWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 57777888888877777666666666665
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.89 E-value=21 Score=40.24 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=7.2
Q ss_pred CCCcEEeCCCCcCC
Q 041908 373 PELVYLDMSQNSFE 386 (883)
Q Consensus 373 ~~L~~L~L~~n~l~ 386 (883)
..|++|-+.+|++.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 34555555555554
No 96
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=39.66 E-value=43 Score=37.07 Aligned_cols=252 Identities=17% Similarity=0.056 Sum_probs=133.8
Q ss_pred CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHh--hCCCCCCEEEccCcccCCcCccccc---CCC
Q 041908 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL--TGCVSLAFMNVSHNYFGGQIFPKYM---SMT 446 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~ 446 (883)
-+.+++++++.|.+....|..+..-.. -+.++.|..+...-..+. .+-..+.+++++.|.....+|.... .-.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 467889999999988777765543221 155666655432211111 2234578888888888777665432 223
Q ss_pred CCCeEEccCcccCc---cccccccCCCCCCEEEccCCccCC----Ccchh----hhCCCCCCEEECCCCcCCCCCCccc-
Q 041908 447 QLAWLYLNDNQFTG---RLEEGLLNAPSLHILDVSNNMLSG----QLPHW----VGNFSNLDVLLMSRNSLEGDVSVPL- 514 (883)
Q Consensus 447 ~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~ls~n~l~~----~~p~~----~~~l~~L~~L~L~~n~l~~~~~~~l- 514 (883)
.++.++.+...++- .-+-....-+.++..+++.|..+- .++.+ +..-.++ .|++.++....+-+..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 45666666554431 112223344577777787776531 22222 2333455 66666655432221111
Q ss_pred -----cCCCcccEEecCCCcCcCc--cccccccCCCcCeeecccCccccccchh--hhcCCCCCEEeccCCcCCc-cCCc
Q 041908 515 -----SNLQVARILDISENKLYGP--LEFSFNHSSSLWHLFLHNNSLNGSIPSA--LFQSSQLMTLDLRDNEFSG-NIPP 584 (883)
Q Consensus 515 -----~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~p~~--~~~~~~L~~L~Ls~N~l~~-~~p~ 584 (883)
..-+.=.++|+..|...+. ....+.+- .+++|.++.|.+.|+.-+. ...-+..+.+++..-.-.- -++.
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~-R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~ 399 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQ-RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSS 399 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccce-eeeEeeccccccccccccccceeeccccccccccccCCceecccc
Confidence 0001113355555544321 11122222 4889999999888776543 3344667777776543210 0111
Q ss_pred ccc--------CCCCCcEEEccCCcccccCchh---hcCCCCCCEEEcCCCcCC
Q 041908 585 LIN--------EDSNLRALLLRGNNLQGNIPQQ---LCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 585 ~l~--------~l~~L~~L~L~~N~l~g~~p~~---l~~l~~L~~L~ls~N~l~ 627 (883)
... ...-+..+.++.|++....-.. +..-+.+..||+++|...
T Consensus 400 ~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 400 TEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred ccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 111 1123667888888877443332 344577888999988653
No 97
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=36.58 E-value=25 Score=37.61 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHHHhhccccceeee
Q 041908 853 FAVSYVTVIVGLLALLFLNSYWHRQWFF 880 (883)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (883)
||+.+++.++++++.+++.||+.++.|+
T Consensus 277 VG~~La~lvlivLiaYli~Rrr~~~gYq 304 (306)
T PF01299_consen 277 VGAALAGLVLIVLIAYLIGRRRSRAGYQ 304 (306)
T ss_pred HHHHHHHHHHHHHHhheeEecccccccc
Confidence 4444444444444444445555555443
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=34.38 E-value=24 Score=34.57 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=15.3
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHh
Q 041908 846 MVAFNWSFAVSYVTVIVGLLALLFL 870 (883)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (883)
+..+++++.+|.++|++++++.+++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 4555666666777666666555544
No 99
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.50 E-value=29 Score=39.20 Aligned_cols=43 Identities=28% Similarity=0.268 Sum_probs=24.2
Q ss_pred CCCCCcEEeCCCCcCCCCCCcccc--ccCcccEEeccCCcccCcc
Q 041908 371 ILPELVYLDMSQNSFEGSIPPSMG--YTVRLLFLDLSSNNFSGEL 413 (883)
Q Consensus 371 ~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~i 413 (883)
..|+|+.|+|++|...-....++. ....|++|.+.+|.+....
T Consensus 242 ~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 367778888887722111111222 2235778888888876443
No 100
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=30.71 E-value=40 Score=21.40 Aligned_cols=18 Identities=33% Similarity=1.025 Sum_probs=10.2
Q ss_pred ccCCCCCCCCCCCCccce
Q 041908 54 ILVSWVDNRTSDCCSWER 71 (883)
Q Consensus 54 ~l~sW~~~~~~~cc~w~g 71 (883)
.+..|.-.++.+||.|.-
T Consensus 3 ~l~~~~Cssdk~CCg~tp 20 (30)
T PF08093_consen 3 VLTFWRCSSDKDCCGWTP 20 (30)
T ss_dssp C-SSSB-SSCCCCCTT--
T ss_pred EeeceeecCCcccccCcc
Confidence 355674455679999983
No 101
>PRK00523 hypothetical protein; Provisional
Probab=28.77 E-value=32 Score=27.30 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHhhccccceee
Q 041908 853 FAVSYVTVIVGLLALLFLNSYWHRQWF 879 (883)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (883)
+++++++.++++++.+++-|++..+|+
T Consensus 8 I~l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 8 LGLGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444454555555555554
No 102
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=26.62 E-value=23 Score=32.68 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=3.0
Q ss_pred hhhhhHHH
Q 041908 853 FAVSYVTV 860 (883)
Q Consensus 853 ~~~~~~~~ 860 (883)
||+|..++
T Consensus 56 VGVGg~il 63 (154)
T PF04478_consen 56 VGVGGPIL 63 (154)
T ss_pred ecccHHHH
Confidence 33333333
No 103
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.07 E-value=38 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=27.7
Q ss_pred EccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908 713 DLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745 (883)
Q Consensus 713 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 745 (883)
||++|+|+-..+..|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999995556678889999999999998864
No 104
>PRK01844 hypothetical protein; Provisional
Probab=24.17 E-value=41 Score=26.67 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhccccceee
Q 041908 858 VTVIVGLLALLFLNSYWHRQWF 879 (883)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~ 879 (883)
++.++++++.+++-|++..+|+
T Consensus 12 ~~li~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 12 VALVAGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555544443
No 105
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.96 E-value=53 Score=20.07 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=5.2
Q ss_pred CCCCEEEccCC
Q 041908 203 TYLRVLDLTSN 213 (883)
Q Consensus 203 ~~L~~L~Ls~n 213 (883)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34444444444
No 106
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=22.66 E-value=40 Score=29.93 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccceee
Q 041908 859 TVIVGLLALLFLNSYWHRQWF 879 (883)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~ 879 (883)
+++.++.++++++|..|+..|
T Consensus 90 lVl~llsg~lv~rrcrrr~~~ 110 (129)
T PF12191_consen 90 LVLALLSGFLVWRRCRRREKF 110 (129)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHhhhhccccC
Confidence 334444566666666655554
No 107
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.94 E-value=43 Score=28.61 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHHHHHH
Q 041908 853 FAVSYVTVIVGLLALLF 869 (883)
Q Consensus 853 ~~~~~~~~~~~~~~~~~ 869 (883)
++++.++++.+++++++
T Consensus 71 i~vg~~~~v~~lv~~l~ 87 (96)
T PTZ00382 71 ISVAVVAVVGGLVGFLC 87 (96)
T ss_pred EEeehhhHHHHHHHHHh
Confidence 33333333333333443
Done!