Query 041908
Match_columns 883
No_of_seqs 798 out of 5542
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 20:39:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-93 4.2E-98 868.2 54.0 717 26-828 8-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.3E-74 1.5E-78 696.8 43.8 615 82-793 71-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-60 3.9E-65 574.2 51.0 601 67-797 4-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5.6E-59 1.9E-63 559.6 50.8 588 91-819 7-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.4E-56 1.2E-60 528.1 44.6 542 91-799 15-567 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-56 5.5E-61 548.4 39.8 558 88-827 24-591 (844)
7 3t6q_A CD180 antigen; protein- 100.0 1.8E-54 6.1E-59 513.3 47.1 534 69-631 14-564 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1E-54 3.5E-59 515.4 41.1 547 71-804 15-570 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.4E-52 4.7E-57 497.1 41.1 541 91-819 14-562 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.8E-52 1.6E-56 508.8 43.8 523 166-820 14-565 (844)
11 4eco_A Uncharacterized protein 100.0 6.5E-52 2.2E-56 490.8 26.7 496 28-603 28-600 (636)
12 4ecn_A Leucine-rich repeat pro 100.0 1.3E-50 4.6E-55 486.3 32.0 515 25-626 264-863 (876)
13 2z63_A TOLL-like receptor 4, v 100.0 2.4E-49 8.1E-54 466.0 39.3 524 91-801 10-540 (570)
14 2z63_A TOLL-like receptor 4, v 100.0 2.6E-48 8.8E-53 457.2 41.3 498 88-632 28-536 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-47 5E-52 448.4 37.2 485 66-631 3-514 (549)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.6E-47 5.4E-52 448.2 34.8 487 181-801 7-519 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-45 8.2E-50 437.9 42.0 518 89-798 53-586 (635)
18 4eco_A Uncharacterized protein 100.0 2E-47 7E-52 452.3 21.8 457 277-816 82-601 (636)
19 2z7x_B TOLL-like receptor 1, v 100.0 6.2E-46 2.1E-50 431.4 28.3 439 276-799 21-488 (520)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-45 3.9E-50 429.2 30.2 459 91-631 3-485 (520)
21 4ecn_A Leucine-rich repeat pro 100.0 5.9E-45 2E-49 437.3 28.0 439 276-796 323-844 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 6.9E-43 2.4E-47 416.6 44.0 495 81-630 69-583 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.8E-43 2E-47 409.8 29.4 456 90-631 33-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-42 8.9E-47 404.3 27.2 439 276-800 52-518 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2E-41 6.9E-46 386.6 29.6 376 352-801 14-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 7.4E-41 2.5E-45 378.6 23.3 423 177-798 9-435 (454)
27 1jl5_A Outer protein YOPM; leu 100.0 3E-40 1E-44 373.7 25.2 288 275-603 10-310 (454)
28 3v47_A TOLL-like receptor 5B a 100.0 2.6E-39 8.9E-44 369.1 29.1 354 349-773 31-413 (455)
29 2id5_A Lingo-1, leucine rich r 100.0 9.2E-38 3.2E-42 358.4 25.8 347 400-819 14-360 (477)
30 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-38 5.1E-43 342.6 17.9 295 26-408 2-302 (313)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-38 2.4E-42 354.6 24.0 368 284-798 26-393 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-37 1.8E-41 347.4 31.0 320 194-627 33-352 (457)
33 1o6v_A Internalin A; bacterial 100.0 2.2E-35 7.5E-40 337.0 34.7 280 420-793 110-389 (466)
34 1o6v_A Internalin A; bacterial 100.0 3E-35 1E-39 335.8 34.5 360 310-774 34-393 (466)
35 1ogq_A PGIP-2, polygalacturona 100.0 4.7E-36 1.6E-40 323.1 18.1 258 495-824 51-312 (313)
36 2id5_A Lingo-1, leucine rich r 100.0 2.5E-35 8.6E-40 338.1 24.9 347 377-797 15-361 (477)
37 3oja_B Anopheles plasmodium-re 100.0 1.2E-34 4.1E-39 341.1 27.6 335 396-819 50-384 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 1.9E-34 6.4E-39 321.7 27.8 335 395-818 43-377 (390)
39 4fmz_A Internalin; leucine ric 100.0 2.3E-32 8E-37 299.7 31.4 304 372-792 43-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 4.6E-32 1.6E-36 297.3 32.6 305 346-768 42-346 (347)
41 3o6n_A APL1; leucine-rich repe 100.0 7.2E-33 2.5E-37 308.8 24.9 333 372-794 44-376 (390)
42 3oja_B Anopheles plasmodium-re 100.0 4.1E-32 1.4E-36 319.4 26.6 312 373-772 51-362 (597)
43 1z7x_W Ribonuclease inhibitor; 100.0 4.4E-35 1.5E-39 334.8 -1.6 381 348-793 3-441 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 2.9E-31 9.8E-36 288.9 24.7 290 398-790 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 6.2E-31 2.1E-35 286.2 24.6 260 363-634 18-284 (332)
46 1xku_A Decorin; proteoglycan, 100.0 3.2E-30 1.1E-34 280.4 28.7 268 447-790 53-330 (330)
47 1xku_A Decorin; proteoglycan, 100.0 1.8E-30 6.1E-35 282.4 25.4 251 373-634 31-283 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-33 1E-37 319.7 1.6 391 276-774 3-446 (461)
49 4fcg_A Uncharacterized protein 100.0 1.4E-30 4.7E-35 282.1 16.2 281 26-339 23-315 (328)
50 2z66_A Variable lymphocyte rec 100.0 1E-28 3.5E-33 265.5 20.2 252 474-798 11-267 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 5.4E-29 1.9E-33 273.3 17.0 207 396-630 30-238 (353)
52 3ogk_B Coronatine-insensitive 100.0 1.3E-30 4.3E-35 307.8 3.6 249 372-623 163-445 (592)
53 4fcg_A Uncharacterized protein 100.0 1.9E-28 6.3E-33 265.3 20.1 226 470-793 81-315 (328)
54 2z80_A TOLL-like receptor 2, v 100.0 3.4E-29 1.2E-33 274.9 14.3 281 444-798 29-320 (353)
55 3ogk_B Coronatine-insensitive 100.0 7.8E-30 2.7E-34 301.0 7.2 407 173-604 67-527 (592)
56 3zyi_A Leucine-rich repeat-con 100.0 2.8E-27 9.6E-32 268.8 24.0 250 474-797 58-308 (452)
57 2z66_A Variable lymphocyte rec 100.0 1.1E-27 3.8E-32 257.4 19.1 249 376-629 10-263 (306)
58 3zyj_A Leucine-rich repeat-con 100.0 3.7E-27 1.3E-31 266.8 24.2 251 473-797 46-297 (440)
59 3o53_A Protein LRIM1, AGAP0063 100.0 4.4E-29 1.5E-33 269.4 6.8 268 448-798 12-282 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 9.2E-28 3.2E-32 255.1 16.6 230 473-798 14-244 (285)
61 1wwl_A Monocyte differentiatio 99.9 1.9E-29 6.4E-34 271.6 3.4 251 443-793 40-310 (312)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-27 4.6E-32 253.9 17.5 253 449-798 14-267 (285)
63 1wwl_A Monocyte differentiatio 99.9 9.8E-29 3.4E-33 266.0 6.0 253 418-770 39-311 (312)
64 3oja_A Leucine-rich immune mol 99.9 7.8E-28 2.7E-32 274.7 10.3 236 469-787 33-270 (487)
65 3zyj_A Leucine-rich repeat-con 99.9 3.3E-26 1.1E-30 259.0 23.4 229 470-769 64-293 (440)
66 3zyi_A Leucine-rich repeat-con 99.9 3.1E-26 1.1E-30 260.2 23.1 229 470-769 75-304 (452)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4.9E-26 1.7E-30 264.8 24.7 268 374-779 41-308 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-25 9.6E-30 258.4 28.0 263 423-798 41-303 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 4.4E-27 1.5E-31 253.8 11.5 269 399-775 12-283 (317)
70 2p1m_B Transport inhibitor res 99.9 2.4E-28 8.4E-33 288.4 0.1 232 295-528 61-324 (594)
71 2p1m_B Transport inhibitor res 99.9 7.8E-28 2.7E-32 284.1 3.1 429 174-625 61-542 (594)
72 3oja_A Leucine-rich immune mol 99.9 1.3E-25 4.4E-30 256.4 17.8 230 485-796 21-255 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 6.7E-25 2.3E-29 231.8 21.1 211 519-799 29-244 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 3.5E-24 1.2E-28 226.3 20.1 212 494-772 28-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.9E-23 6.6E-28 219.7 23.3 216 64-313 2-218 (270)
76 2o6q_A Variable lymphocyte rec 99.9 2.9E-23 1E-27 218.3 22.1 186 543-797 38-223 (270)
77 3rfs_A Internalin B, repeat mo 99.9 9.1E-24 3.1E-28 222.4 14.7 180 541-798 62-241 (272)
78 3rfs_A Internalin B, repeat mo 99.9 1.7E-23 5.9E-28 220.2 16.9 135 491-629 38-172 (272)
79 1p9a_G Platelet glycoprotein I 99.9 7.4E-23 2.5E-27 217.1 20.7 205 515-795 7-211 (290)
80 3goz_A Leucine-rich repeat-con 99.9 1.3E-24 4.5E-29 239.0 7.2 178 450-627 2-209 (362)
81 3goz_A Leucine-rich repeat-con 99.9 1.5E-24 5E-29 238.6 7.5 183 447-629 23-240 (362)
82 2ca6_A RAN GTPase-activating p 99.9 4.8E-25 1.6E-29 245.0 2.5 249 462-796 24-320 (386)
83 3m19_A Variable lymphocyte rec 99.9 1.2E-22 3.9E-27 211.2 16.7 212 543-827 15-232 (251)
84 2ca6_A RAN GTPase-activating p 99.9 1.9E-24 6.6E-29 240.2 3.0 189 438-626 24-256 (386)
85 2ast_B S-phase kinase-associat 99.9 1.4E-23 4.8E-28 228.7 8.7 251 471-798 48-312 (336)
86 4glp_A Monocyte differentiatio 99.9 9.9E-23 3.4E-27 218.9 13.7 209 494-793 91-308 (310)
87 4glp_A Monocyte differentiatio 99.9 8.2E-23 2.8E-27 219.6 12.6 202 541-814 90-306 (310)
88 2ast_B S-phase kinase-associat 99.9 2.2E-23 7.6E-28 227.1 7.9 198 423-624 48-257 (336)
89 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.9E-26 207.1 20.2 135 492-628 75-209 (290)
90 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.5E-26 207.4 17.3 60 706-769 172-231 (308)
91 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.8E-26 200.8 14.7 79 707-789 155-236 (239)
92 1h6u_A Internalin H; cell adhe 99.9 4.5E-21 1.5E-25 205.5 17.0 173 538-793 59-231 (308)
93 2xwt_C Thyrotropin receptor; s 99.9 2.4E-21 8.3E-26 199.7 14.4 197 495-766 32-237 (239)
94 2o6s_A Variable lymphocyte rec 99.9 6.7E-21 2.3E-25 191.8 16.6 184 67-301 7-190 (208)
95 3m19_A Variable lymphocyte rec 99.8 3.6E-20 1.2E-24 192.3 20.1 181 447-630 15-195 (251)
96 3cvr_A Invasion plasmid antige 99.8 1.6E-20 5.5E-25 215.6 14.2 134 471-627 60-193 (571)
97 3cvr_A Invasion plasmid antige 99.8 4.1E-20 1.4E-24 212.3 17.4 189 494-779 59-254 (571)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 1.7E-20 5.9E-25 190.2 11.7 159 569-799 14-173 (220)
99 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.9E-24 182.8 16.0 130 496-625 30-159 (208)
100 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.7E-24 197.1 18.0 171 449-623 12-186 (350)
101 2v9t_B SLIT homolog 2 protein 99.8 7.7E-20 2.6E-24 185.4 11.6 157 569-797 14-170 (220)
102 4ay9_X Follicle-stimulating ho 99.8 4.6E-19 1.6E-23 193.6 16.8 198 112-333 30-231 (350)
103 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 177.6 18.6 162 63-245 15-176 (229)
104 3e6j_A Variable lymphocyte rec 99.8 2.3E-18 7.7E-23 175.8 16.7 157 568-797 21-177 (229)
105 2xot_A Amphoterin-induced prot 99.8 5.8E-19 2E-23 193.6 12.0 179 546-796 22-206 (361)
106 1h6t_A Internalin B; cell adhe 99.8 2.5E-18 8.6E-23 182.3 16.4 172 539-793 43-214 (291)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-18 7.4E-23 174.6 14.9 156 545-772 14-170 (220)
108 2v9t_B SLIT homolog 2 protein 99.8 5E-18 1.7E-22 172.0 15.1 154 545-770 14-167 (220)
109 1m9s_A Internalin B; cell inva 99.7 5.5E-18 1.9E-22 196.9 15.8 169 446-628 21-189 (605)
110 1w8a_A SLIT protein; signaling 99.7 1.8E-18 6E-23 171.3 9.6 114 706-819 53-166 (192)
111 1dce_A Protein (RAB geranylger 99.7 1E-20 3.4E-25 218.8 -7.7 77 707-785 486-566 (567)
112 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.9E-22 183.3 16.3 177 67-266 18-202 (361)
113 1dce_A Protein (RAB geranylger 99.7 1.9E-20 6.6E-25 216.4 -7.1 202 469-762 348-567 (567)
114 1h6t_A Internalin B; cell adhe 99.7 2.3E-17 7.8E-22 174.9 15.8 185 402-603 29-213 (291)
115 4b8c_D Glucose-repressible alc 99.7 1.4E-18 4.7E-23 207.4 7.0 134 470-627 173-306 (727)
116 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 194.7 13.9 172 394-580 40-211 (605)
117 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.9E-22 165.0 12.3 155 563-793 41-195 (197)
118 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.2E-22 173.4 12.0 171 540-794 17-187 (263)
119 1w8a_A SLIT protein; signaling 99.7 3.8E-17 1.3E-21 161.7 12.1 156 569-797 11-167 (192)
120 4b8c_D Glucose-repressible alc 99.7 4.2E-18 1.4E-22 203.2 5.4 166 445-635 172-337 (727)
121 4ezg_A Putative uncharacterize 99.7 1.5E-16 5E-21 158.3 13.6 151 470-627 44-194 (197)
122 1xeu_A Internalin C; cellular 99.7 7.7E-17 2.6E-21 168.0 10.1 168 447-629 20-187 (263)
123 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.7E-21 156.5 9.7 93 706-798 53-145 (193)
124 3sb4_A Hypothetical leucine ri 99.6 1.8E-16 6.2E-21 171.5 10.1 285 299-595 24-326 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 4.9E-20 146.9 11.3 88 706-793 70-161 (168)
126 2je0_A Acidic leucine-rich nuc 99.6 9.5E-16 3.3E-20 144.9 8.9 82 706-787 63-148 (149)
127 2o6r_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 143.1 15.3 114 112-245 28-141 (177)
128 2o6r_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 145.1 13.0 92 706-797 51-142 (177)
129 2wfh_A SLIT homolog 2 protein 99.6 1.2E-14 4.1E-19 143.6 14.4 129 569-770 13-141 (193)
130 2je0_A Acidic leucine-rich nuc 99.6 5E-15 1.7E-19 139.9 10.9 128 494-623 17-149 (149)
131 2ell_A Acidic leucine-rich nuc 99.6 8.3E-15 2.9E-19 141.5 12.5 132 494-627 24-160 (168)
132 3sb4_A Hypothetical leucine ri 99.6 1.7E-15 6E-20 163.7 8.1 284 324-621 24-328 (329)
133 1ds9_A Outer arm dynein; leuci 99.5 1.5E-16 5E-21 158.5 -3.8 154 563-792 15-185 (198)
134 1ds9_A Outer arm dynein; leuci 99.5 5.2E-16 1.8E-20 154.5 -4.3 155 539-769 15-186 (198)
135 4fdw_A Leucine rich hypothetic 99.5 1.1E-12 3.8E-17 144.7 20.8 223 374-625 158-381 (401)
136 4fdw_A Leucine rich hypothetic 99.5 7.9E-13 2.7E-17 145.9 19.3 250 373-636 113-367 (401)
137 3g39_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 132.9 10.6 108 691-798 14-121 (170)
138 4fs7_A Uncharacterized protein 99.4 2.7E-12 9.2E-17 142.3 20.2 142 372-523 252-393 (394)
139 4fs7_A Uncharacterized protein 99.4 1.7E-12 5.8E-17 143.9 18.5 334 191-594 59-392 (394)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-13 8.5E-18 132.2 10.1 130 492-627 17-153 (176)
141 2r9u_A Variable lymphocyte rec 99.4 3.3E-13 1.1E-17 130.7 10.8 108 691-798 17-124 (174)
142 1a9n_A U2A', U2A'; complex (nu 99.4 3E-13 1E-17 131.6 9.2 131 467-603 16-153 (176)
143 3g39_A Variable lymphocyte rec 99.3 8E-12 2.7E-16 120.5 13.1 88 138-243 30-117 (170)
144 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 119.1 12.9 68 173-241 51-118 (174)
145 2ifg_A High affinity nerve gro 99.2 1.3E-11 4.3E-16 134.5 10.6 90 706-796 30-120 (347)
146 3un9_A NLR family member X1; l 99.2 1.9E-12 6.6E-17 141.4 0.7 135 445-579 71-224 (372)
147 4gt6_A Cell surface protein; l 99.2 8.5E-10 2.9E-14 122.1 21.6 109 173-285 57-169 (394)
148 4gt6_A Cell surface protein; l 99.2 1.3E-09 4.3E-14 120.7 22.6 44 218-263 53-97 (394)
149 3un9_A NLR family member X1; l 99.2 1.5E-12 5.2E-17 142.2 -2.0 187 373-579 72-283 (372)
150 2ifg_A High affinity nerve gro 99.2 5.3E-11 1.8E-15 129.5 10.0 106 710-817 11-118 (347)
151 2ra8_A Uncharacterized protein 98.9 8.6E-10 3E-14 119.2 7.8 167 557-790 163-341 (362)
152 4h09_A Hypothetical leucine ri 98.9 6E-08 2.1E-12 106.6 21.3 98 465-565 258-355 (379)
153 4h09_A Hypothetical leucine ri 98.9 1.1E-07 3.7E-12 104.6 21.6 128 466-597 213-340 (379)
154 2ra8_A Uncharacterized protein 98.7 5.9E-09 2E-13 112.7 5.8 84 540-625 250-341 (362)
155 3rw6_A Nuclear RNA export fact 98.4 1.5E-07 5E-12 96.3 5.6 66 729-796 168-237 (267)
156 3rw6_A Nuclear RNA export fact 98.4 9E-08 3.1E-12 97.9 3.0 80 705-786 168-258 (267)
157 1io0_A Tropomodulin; LRR prote 98.3 2.4E-07 8.1E-12 90.2 4.5 120 488-627 30-164 (185)
158 1io0_A Tropomodulin; LRR prote 98.3 2.2E-07 7.6E-12 90.4 3.3 114 465-578 31-163 (185)
159 3e4g_A ATP synthase subunit S, 97.6 2.3E-05 7.7E-10 74.1 3.3 33 520-552 63-95 (176)
160 3e4g_A ATP synthase subunit S, 97.5 2.9E-05 9.9E-10 73.4 2.5 84 542-625 61-150 (176)
161 3rfe_A Platelet glycoprotein I 97.0 0.00096 3.3E-08 60.0 6.5 40 756-795 32-71 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00051 1.7E-08 66.1 4.4 86 541-626 69-169 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0011 3.9E-08 59.5 6.2 57 710-768 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 96.8 0.00067 2.3E-08 65.3 4.1 18 490-507 66-83 (197)
165 2l2t_A Receptor tyrosine-prote 47.5 17 0.00057 24.9 3.1 24 851-874 14-37 (44)
166 2ks1_B Epidermal growth factor 46.3 15 0.0005 25.2 2.7 22 853-874 17-38 (44)
167 2lz0_A Uncharacterized protein 32.5 43 0.0015 27.6 4.1 42 194-237 11-52 (100)
168 2jwa_A Receptor tyrosine-prote 32.1 54 0.0018 22.4 3.6 6 867-872 32-37 (44)
169 2l9u_A Receptor tyrosine-prote 30.2 31 0.001 21.8 2.0 22 851-872 10-31 (40)
170 2k9y_A Ephrin type-A receptor 24.7 45 0.0015 22.2 2.3 10 850-859 16-25 (41)
171 2lz0_A Uncharacterized protein 24.1 87 0.003 25.7 4.5 46 100-148 8-53 (100)
172 2gx1_A Neurotoxin MAGI-5; spid 22.4 45 0.0015 19.5 1.6 19 54-72 3-21 (29)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-93 Score=868.16 Aligned_cols=717 Identities=31% Similarity=0.412 Sum_probs=573.1
Q ss_pred CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCC--
Q 041908 26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSES-- 103 (883)
Q Consensus 26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-- 103 (883)
.+.++||+|||+||+++.++ . .+++|. .+++||+|+||+|+ ++ +++.|||+++.+.|.
T Consensus 8 ~~~~~~~~all~~k~~~~~~------~-~l~~W~--~~~~~C~w~gv~C~--~~---------~v~~L~L~~~~l~g~~~ 67 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDK------N-LLPDWS--SNKNPCTFDGVTCR--DD---------KVTSIDLSSKPLNVGFS 67 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCT------T-SSTTCC--TTSCGGGSTTEEEE--TT---------EEEEEECTTSCCCEEHH
T ss_pred cCCHHHHHHHHHHHhhCCCc------c-cccCCC--CCCCCcCCcceEEC--CC---------cEEEEECCCCCcCCccC
Confidence 45789999999999999632 4 789994 35799999999998 22 799999999999998
Q ss_pred -CchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhh--hhcCCCC
Q 041908 104 -LVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNA--RICELKN 180 (883)
Q Consensus 104 -~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~--~l~~l~~ 180 (883)
+++.+.++++|+.++++.+.+.. +| +.++++++|++|||++|.+.|.+| . .++++++
T Consensus 68 ~l~~~l~~L~~L~~l~~~~~~~~~--l~-~~~~~l~~L~~L~Ls~n~l~~~~~-----------------~~~~l~~l~~ 127 (768)
T 3rgz_A 68 AVSSSLLSLTGLESLFLSNSHING--SV-SGFKCSASLTSLDLSRNSLSGPVT-----------------TLTSLGSCSG 127 (768)
T ss_dssp HHHHHTTTCTTCCEEECTTSCEEE--CC-CCCCCCTTCCEEECCSSEEEEEGG-----------------GGGGGGGCTT
T ss_pred ccChhHhccCcccccCCcCCCcCC--Cc-hhhccCCCCCEEECCCCcCCCcCC-----------------ChHHHhCCCC
Confidence 89999999999999999998754 55 589999999999999999998887 5 7899999
Q ss_pred CCEEEccCCcCCCCCCccc-cCCCCCCEEEccCCccccccChhh---hcCCCCCCEEeccCCcCccccChHhhhcCCCCc
Q 041908 181 LVELNLSWNKLDGSLPQCL-SNLTYLRVLDLTSNQLSGNLPISV---FANLTSLEYLSLSGNNFQGSFSLSVLANHSRLE 256 (883)
Q Consensus 181 L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~~---~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~ 256 (883)
|++|+|++|.+++.+|..+ .++++|++||+++|++++..| .. ++++++|++|++++|.+++.++. .++++|+
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~ 203 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV-VGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLE 203 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETH-HHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCC
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCC-hhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCC
Confidence 9999999999998888776 899999999999999997666 44 78999999999999999876653 5666666
Q ss_pred EEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccc
Q 041908 257 VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF 336 (883)
Q Consensus 257 ~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 336 (883)
+|++++|.+ .+.+|. ++.+++|++|++++|.+++.+|..+. ++++|++|++++|.
T Consensus 204 ~L~Ls~n~l-----------------------~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 204 FLDVSSNNF-----------------------STGIPF-LGDCSALQHLDISGNKLSGDFSRAIS-TCTELKLLNISSNQ 258 (768)
T ss_dssp EEECCSSCC-----------------------CSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT-TCSSCCEEECCSSC
T ss_pred EEECcCCcC-----------------------CCCCcc-cccCCCCCEEECcCCcCCCcccHHHh-cCCCCCEEECCCCc
Confidence 666555554 444444 55555555555555555555554443 55555555555555
Q ss_pred ccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchh
Q 041908 337 LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQ 416 (883)
Q Consensus 337 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~ 416 (883)
+.+..+.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.++|.+|..
T Consensus 259 l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~ 337 (768)
T 3rgz_A 259 FVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337 (768)
T ss_dssp CEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH
T ss_pred ccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH
Confidence 55433222 56777888888888888888887665688999999999888888888888899999999999888888888
Q ss_pred HhhCCCCCCEEEccCcccCCcCcccccCCC-CCCeEEccCcccCccccccccC--CCCCCEEEccCCccCCCcchhhhCC
Q 041908 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMT-QLAWLYLNDNQFTGRLEEGLLN--APSLHILDVSNNMLSGQLPHWVGNF 493 (883)
Q Consensus 417 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~ls~n~l~~~~p~~~~~l 493 (883)
.+..+++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+.. +++|++|++++|.+++.+|..++++
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred HHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 677888999999999988888888888887 8999999999988888877766 7789999999999988888889999
Q ss_pred CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEec
Q 041908 494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL 573 (883)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L 573 (883)
++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+.++++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 99999999999998888888989999999999999998888888888889999999999999888988999999999999
Q ss_pred cCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccc
Q 041908 574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653 (883)
Q Consensus 574 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 653 (883)
++|++++.+|.+++.+++|++|++++|+++|.+|..++.+++|+.||+++|+++|.+|.++............. +....
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~-~~~~~ 576 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-GKRYV 576 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC-SCEEE
T ss_pred cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc-ccccc
Confidence 99999988999999999999999999999999999999999999999999999999998776654322111000 00000
Q ss_pred ----------------cccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908 654 ----------------YTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN 717 (883)
Q Consensus 654 ----------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 717 (883)
...+.+..+. ........... .+.. .... +.. ....+.+++|+.||||+|
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-----~l~~-~~~~----g~~-~~~~~~l~~L~~LdLs~N 642 (768)
T 3rgz_A 577 YIKNDGMKKECHGAGNLLEFQGIRSE---QLNRLSTRNPC-----NITS-RVYG----GHT-SPTFDNNGSMMFLDMSYN 642 (768)
T ss_dssp EEECCSCCTTCCSSEEEEECTTCCGG---GGGGGGGTCCS-----CTTS-CEEE----EEC-CCSCSSSBCCCEEECCSS
T ss_pred ccccccccccccccccccccccccch---hhhcccccccc-----cccc-ceec----ccC-chhhhccccccEEECcCC
Confidence 0000000000 00000000000 0000 0000 000 001134688999999999
Q ss_pred cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908 718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 797 (883)
+++|.||.+|+++++|++|+||+|+++|.||..++++++|++||||+|+++|.||.++.++++|++||+|+|+|+|+||.
T Consensus 643 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCcccCCCcCCCCCCCCCCCCCCC
Q 041908 798 TKQFANFDESNYRGNLNLCGPAVLKNCSTDL 828 (883)
Q Consensus 798 ~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~ 828 (883)
++||.+|.+.+|.|||++||+|+. .|....
T Consensus 723 ~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 723 MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 999999999999999999999986 897544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-74 Score=696.84 Aligned_cols=615 Identities=30% Similarity=0.405 Sum_probs=453.6
Q ss_pred CCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCccccccc
Q 041908 82 NNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMK--VLPNLRNLEVLDLSGNGLIGSLTMQGE 159 (883)
Q Consensus 82 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 159 (883)
++++++++|+.++++.+.+.. +|+.++++++|++|+|++|.+.+. +| . .++++++|++|||++|.+.+.+|
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~-~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---- 143 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGP-VT-TLTSLGSCSGLKFLNVSSNTLDFPGK---- 143 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEE-GG-GGGGGGGCTTCCEEECCSSEEECCSS----
T ss_pred hhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCc-CC-ChHHHhCCCCCCEEECcCCccCCcCC----
Confidence 456677777777777776532 456788888888888888888765 55 3 67888888888888888776665
Q ss_pred cchhhcccccchhhhh-cCCCCCCEEEccCCcCCCCCCcc---ccCCCCCCEEEccCCccccccChhhhcCCCCCCEEec
Q 041908 160 KLELLNNKCREMNARI-CELKNLVELNLSWNKLDGSLPQC---LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSL 235 (883)
Q Consensus 160 ~L~~~~n~~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 235 (883)
..+ .++++|++|+|++|++++..|.. +.++++|++|++++|.+++.+| +.++++|++|++
T Consensus 144 -------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 207 (768)
T 3rgz_A 144 -------------VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDV 207 (768)
T ss_dssp -------------CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEEC
T ss_pred -------------HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEEC
Confidence 333 56677777777777777666655 6667777777777777765554 366777777777
Q ss_pred cCCcCccccChHhhhcCCCCcEEEccCcccccCC-CCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcC
Q 041908 236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETEN-FPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG 314 (883)
Q Consensus 236 ~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 314 (883)
++|.+++.++. ++++++|++|++++|.+.... ..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.++|
T Consensus 208 s~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 208 SSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred cCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence 77777665553 667777777777777665432 23445566777777777776666654 66777777777777777
Q ss_pred CcchHHHhcCCCCcEEEcccccccccc-cCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccc
Q 041908 315 TFPTWLLQNNTKLEFLFLFNNFLKGLL-HLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSM 393 (883)
Q Consensus 315 ~~p~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l 393 (883)
.+|..++..+++|++|++++|.+++.. .....+++|++|++++|.+.+.+|......+++|++|++++|.+++.+|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 777666544577777777777766432 2234567777777777777777776533347777777777777777777777
Q ss_pred cccC-cccEEeccCCcccCccchhHhhC-CCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCC
Q 041908 394 GYTV-RLLFLDLSSNNFSGELPKQFLTG-CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPS 471 (883)
Q Consensus 394 ~~l~-~L~~L~Ls~n~l~~~ip~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 471 (883)
..++ +|++|++++|.+++.+|..+... +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC
Confidence 7766 77777777777776666654321 566777777777777777777777777777777777777777777777777
Q ss_pred CCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeeccc
Q 041908 472 LHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551 (883)
Q Consensus 472 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~ 551 (883)
|++|++++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|++++|++++.+|.++..+++|++|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCC----------------------------------------
Q 041908 552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSN---------------------------------------- 591 (883)
Q Consensus 552 n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~---------------------------------------- 591 (883)
|+++|.+|..+.++++|+.|++++|+++|.+|..+.....
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchh
Confidence 7777777777777777777777777777777766554433
Q ss_pred ------CcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchh
Q 041908 592 ------LRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS 665 (883)
Q Consensus 592 ------L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (883)
++.++++.|.+.|.+|..+..+++|+.||+++|+++|.+|..+++
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~----------------------------- 654 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS----------------------------- 654 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG-----------------------------
T ss_pred hhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc-----------------------------
Confidence 334455668899999999999999999999999999999987754
Q ss_pred hhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908 666 AYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745 (883)
Q Consensus 666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 745 (883)
++.|+.||||+|+++|.||.+|+++++|++||||+|+++|
T Consensus 655 ----------------------------------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 655 ----------------------------------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred ----------------------------------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 4678999999999999999999999999999999999999
Q ss_pred CCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCc-Ccc
Q 041908 746 SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYND-LSG 793 (883)
Q Consensus 746 ~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~-l~g 793 (883)
.||..++++++|++||||+|+++|.||.. ..+..+....+.+|+ |+|
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999999999999999999999975 344555666677885 666
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-60 Score=574.20 Aligned_cols=601 Identities=22% Similarity=0.198 Sum_probs=441.6
Q ss_pred CccceeecCCCCC--CCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEE
Q 041908 67 CSWERIKCNVTTA--NYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLD 144 (883)
Q Consensus 67 c~w~gv~C~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~ 144 (883)
|.++.|.|....- -+..+. +++++|+|++|.+.+..+..|.++++|++|+|++|.+.+ +++..++++++|++|+
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK--LEPELCQKLPMLKVLN 79 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC--CCTTHHHHCTTCCEEE
T ss_pred eECCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc--cCHHHHhcccCcCEEE
Confidence 5566677764322 122232 688888888888888777788888888888888888877 4436788888888888
Q ss_pred CCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhh
Q 041908 145 LSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVF 224 (883)
Q Consensus 145 Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~ 224 (883)
|++|.+.+..+ ..++++++|++|+|++|++++..|..|+++++|++|++++|.+++..| ..+
T Consensus 80 L~~n~l~~l~~-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~ 141 (680)
T 1ziw_A 80 LQHNELSQLSD-----------------KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQ 141 (680)
T ss_dssp CCSSCCCCCCT-----------------TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSS
T ss_pred CCCCccCccCh-----------------hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhh
Confidence 88888765433 457888888888888888887777788888888888888888885555 677
Q ss_pred cCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCE
Q 041908 225 ANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY 304 (883)
Q Consensus 225 ~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 304 (883)
+++++|++|++++|.+++. +...+... ...+|++|++++|.+.+..|..+..+.+|+.
T Consensus 142 ~~l~~L~~L~L~~n~l~~~-~~~~~~~~---------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 142 VQLENLQELLLSNNKIQAL-KSEELDIF---------------------ANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp SCCTTCCEEECCSSCCCCB-CHHHHGGG---------------------TTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred cccccCCEEEccCCccccc-CHHHhhcc---------------------ccccccEEECCCCcccccChhhhhhhhhhhh
Confidence 8888888888888888743 33333211 1234566666777777777777788888888
Q ss_pred EEccCCCCcCCcchHHHh--cCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCC--CCcEEeC
Q 041908 305 IDLSHNNLAGTFPTWLLQ--NNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILP--ELVYLDM 380 (883)
Q Consensus 305 L~Ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~--~L~~L~L 380 (883)
++++++.+.+.....+.. ..++|+.|++++|. +.+..|..+.. ++ +|++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~-----------------------l~~~~~~~~~~-l~~~~L~~L~L 255 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-----------------------LSTTSNTTFLG-LKWTNLTMLDL 255 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-----------------------CCEECTTTTGG-GGGSCCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCc-----------------------ccccChhHhhc-cCcCCCCEEEC
Confidence 888887765332222211 22445555555444 44444444432 22 2555555
Q ss_pred CCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc-----Cc----ccccCCCCCCeE
Q 041908 381 SQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ-----IF----PKYMSMTQLAWL 451 (883)
Q Consensus 381 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-----~~----~~~~~l~~L~~L 451 (883)
++|.+++..|..++.+++|++|++++|.+.+..|.. +.++++|+.|++++|...+. +| ..+..+++|++|
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS-LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT-TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCcccccCcccccEeeCCCCccCccChhh-hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 555555555555555555555555555555333332 34555555555555443321 12 256678888888
Q ss_pred EccCcccCccccccccCCCCCCEEEccCCccCCCc--chhhhC--CCCCCEEECCCCcCCCCCCccccCCCcccEEecCC
Q 041908 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL--PHWVGN--FSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE 527 (883)
Q Consensus 452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 527 (883)
++++|++++..+..+..+++|++|++++|.+.... +..+.. .++|++|++++|++++..|..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 88888888888888888888999998888764322 122332 35899999999999988888899999999999999
Q ss_pred CcCcCccc-cccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC--ccCCccccCCCCCcEEEccCCcccc
Q 041908 528 NKLYGPLE-FSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS--GNIPPLINEDSNLRALLLRGNNLQG 604 (883)
Q Consensus 528 n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~L~~N~l~g 604 (883)
|.+.+.+| ..+..+++|++|++++|++++..+..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|++++
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 99987665 57888999999999999998888888999999999999999987 5788899999999999999999998
Q ss_pred cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhh
Q 041908 605 NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNREL 684 (883)
Q Consensus 605 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 684 (883)
..|..+..+++|+.|++++|++++..+..+.... .
T Consensus 495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~---------------------------~------------------ 529 (680)
T 1ziw_A 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGP---------------------------I------------------ 529 (680)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC---------------------------C------------------
T ss_pred CChhhhccccccCEEeCCCCCccccchhhccCCc---------------------------c------------------
Confidence 7788899999999999999998754322211000 0
Q ss_pred cceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCC
Q 041908 685 RQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSY 764 (883)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 764 (883)
.....+++|+.|||++|+++...+..|+++++|+.|+|++|++++..|..|.++++|+.|||++
T Consensus 530 ----------------~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~ 593 (680)
T 1ziw_A 530 ----------------YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593 (680)
T ss_dssp ----------------CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ----------------hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence 0002267899999999999944445699999999999999999988888899999999999999
Q ss_pred CcccccCCcccc-CCCCCcEEEccCCcCcccCCC
Q 041908 765 NKLRGQIPLELS-ELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 765 N~Lsg~ip~~l~-~l~~L~~l~ls~N~l~g~ip~ 797 (883)
|++++.+|..+. .+++|+.+++++|++.|.++.
T Consensus 594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999998888887 789999999999999999986
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.6e-59 Score=559.55 Aligned_cols=588 Identities=21% Similarity=0.184 Sum_probs=435.3
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908 91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170 (883)
Q Consensus 91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~ 170 (883)
+.+|.+++++.. +|..+. +++++|+|++|.+++ +|...|+++++|++|||++|.+.+..|
T Consensus 7 ~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------- 66 (680)
T 1ziw_A 7 EVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEP--------------- 66 (680)
T ss_dssp SEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCT---------------
T ss_pred CeeECCCCCccc-cccccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCH---------------
Confidence 356666666543 343332 456666666666554 443445555666666666655555444
Q ss_pred hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250 (883)
Q Consensus 171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~ 250 (883)
..+.++++|++|+|++|++++..+..|+++++|++|++++|+++ .+|...|+++++|++|++++|.+++..+ ..+.
T Consensus 67 --~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~ 142 (680)
T 1ziw_A 67 --ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQV 142 (680)
T ss_dssp --THHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC-CSSS
T ss_pred --HHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCc-hhhc
Confidence 44555555566666555555433334555555555555555555 3332455555555555555555543222 1222
Q ss_pred cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhh--cCCCCCEEEccCCCCcCCcchHHHhcCCCCc
Q 041908 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQ--YQYDLRYIDLSHNNLAGTFPTWLLQNNTKLE 328 (883)
Q Consensus 251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 328 (883)
+ +.+|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+ ..+++|+
T Consensus 143 ~-----------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 198 (680)
T 1ziw_A 143 Q-----------------------LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-HAIGRLF 198 (680)
T ss_dssp C-----------------------CTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-GGSSEEC
T ss_pred c-----------------------cccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh-hhhhhhh
Confidence 2 33444555555555555555543 34667777777777665444433 2455555
Q ss_pred EEEcccccccccccCCCCCCCccEEEccCCccccccchhhh--cCCCCCcEEeCCCCcCCCCCCccccccCc--ccEEec
Q 041908 329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFG--MILPELVYLDMSQNSFEGSIPPSMGYTVR--LLFLDL 404 (883)
Q Consensus 329 ~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L 404 (883)
.|++. ++.+.+.....+. ...++|+.|++++|.+++..|..+..++. |++|++
T Consensus 199 ~L~l~-----------------------~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L 255 (680)
T 1ziw_A 199 GLFLN-----------------------NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255 (680)
T ss_dssp EEECT-----------------------TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred hhhcc-----------------------ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence 55544 4444322222211 02579999999999999998999988865 999999
Q ss_pred cCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCc-----cccc----cccCCCCCCEE
Q 041908 405 SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTG-----RLEE----GLLNAPSLHIL 475 (883)
Q Consensus 405 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~~~~l~~L~~L 475 (883)
++|.+.+..|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ .+|. .+..+++|++|
T Consensus 256 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L 334 (680)
T 1ziw_A 256 SYNNLNVVGND-SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334 (680)
T ss_dssp TTSCCCEECTT-TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEE
T ss_pred CCCCcCccCcc-cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEE
Confidence 99999854444 45789999999999999999999999999999999999886554 2332 67889999999
Q ss_pred EccCCccCCCcchhhhCCCCCCEEECCCCcCCCCC--CccccC--CCcccEEecCCCcCcCccccccccCCCcCeeeccc
Q 041908 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDV--SVPLSN--LQVARILDISENKLYGPLEFSFNHSSSLWHLFLHN 551 (883)
Q Consensus 476 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~ 551 (883)
++++|.+.+..|..+.++++|++|++++|.++... ...+.. .++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414 (680)
T ss_dssp ECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCC
Confidence 99999999988999999999999999999865432 223333 35899999999999999999999999999999999
Q ss_pred Cccccccc-hhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc--ccCchhhcCCCCCCEEEcCCCcCCC
Q 041908 552 NSLNGSIP-SALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ--GNIPQQLCHLRKIAIVDISYNLLDG 628 (883)
Q Consensus 552 n~l~~~~p-~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~--g~~p~~l~~l~~L~~L~ls~N~l~~ 628 (883)
|.+++.+| ..+.++++|++|++++|++++..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++
T Consensus 415 N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence 99998776 68899999999999999999999999999999999999999987 6789999999999999999999987
Q ss_pred CCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccc
Q 041908 629 SIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY 708 (883)
Q Consensus 629 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 708 (883)
..|..+.. +++
T Consensus 495 i~~~~~~~---------------------------------------------------------------------l~~ 505 (680)
T 1ziw_A 495 INDDMLEG---------------------------------------------------------------------LEK 505 (680)
T ss_dssp CCTTTTTT---------------------------------------------------------------------CTT
T ss_pred CChhhhcc---------------------------------------------------------------------ccc
Confidence 66654432 567
Q ss_pred ccEEEccCCcCcccCc--------ccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908 709 MTGLDLSSNELTGEIP--------SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY 780 (883)
Q Consensus 709 L~~LdLs~N~l~g~ip--------~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~ 780 (883)
|+.|||++|++++..+ ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..|..+.++++
T Consensus 506 L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCC
Confidence 8999999999986522 24789999999999999999655567999999999999999999877788899999
Q ss_pred CcEEEccCCcCcccCCCCc--cCCCCCCcccCCCcCCCCCC
Q 041908 781 LAIFNVSYNDLSGPTPNTK--QFANFDESNYRGNLNLCGPA 819 (883)
Q Consensus 781 L~~l~ls~N~l~g~ip~~~--~~~~~~~~~~~gn~~lc~~~ 819 (883)
|+.|++++|++++..|... .+..+....+.|||..|..+
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 9999999999999777542 46666777889999999654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.4e-56 Score=528.08 Aligned_cols=542 Identities=22% Similarity=0.190 Sum_probs=398.7
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908 91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170 (883)
Q Consensus 91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~ 170 (883)
++++.++.++.. +|..+.. .+++|+|++|.+++ +++..|+++++|++|+|++|.+.+..|
T Consensus 15 ~~~~c~~~~l~~-iP~~l~~--~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~--------------- 74 (606)
T 3t6q_A 15 KTYNCENLGLNE-IPGTLPN--STECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHE--------------- 74 (606)
T ss_dssp TEEECTTSCCSS-CCTTSCT--TCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCEECT---------------
T ss_pred ceEECCCCCccc-CcCCCCC--cCcEEEccCCccCc--CChhHhccCccceEEECCCCccceeCh---------------
Confidence 467888777654 4555543 67888888888876 544678888888888888887766555
Q ss_pred hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250 (883)
Q Consensus 171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~ 250 (883)
..+.++++|++|+|++|++++..|..|+++++|++|++++|+++ .++...++++++|++|++++|++++ ++.
T Consensus 75 --~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~-~~~---- 146 (606)
T 3t6q_A 75 --DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISS-IKL---- 146 (606)
T ss_dssp --TTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCC-CCC----
T ss_pred --hhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccc-cCc----
Confidence 66777788888888888877777777777888888888888777 4432567777777777777777663 111
Q ss_pred cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCC--EEEccCCCCcCCcchHHHhcCCCCc
Q 041908 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLR--YIDLSHNNLAGTFPTWLLQNNTKLE 328 (883)
Q Consensus 251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~Ls~n~l~~~~p~~~~~~l~~L~ 328 (883)
+....+.+|++|++++|.+++..|..+..+++|+ .|++++|.+++..|..+ ...+
T Consensus 147 -------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~-- 203 (606)
T 3t6q_A 147 -------------------PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAV-- 203 (606)
T ss_dssp -------------------CTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCE--
T ss_pred -------------------ccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh--hhcc--
Confidence 1112233455555666666666666677777777 67777777764444332 2233
Q ss_pred EEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908 329 FLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN 408 (883)
Q Consensus 329 ~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 408 (883)
|++|++++|. .++..+.. +..++...+.-..+. .+...
T Consensus 204 ---------------------L~~L~l~~~~---~~~~~~~~-l~~~~l~~l~~~~~~-----------~~~~~------ 241 (606)
T 3t6q_A 204 ---------------------FQSLNFGGTQ---NLLVIFKG-LKNSTIQSLWLGTFE-----------DMDDE------ 241 (606)
T ss_dssp ---------------------EEEEECTTCS---CHHHHHHH-TTTCEEEEEECCCCT-----------TSCCC------
T ss_pred ---------------------ccccccCCch---hHHHHhhh-ccccchhheechhhc-----------ccccc------
Confidence 4444444443 12222221 333332222211111 01101
Q ss_pred ccCccchhHhhCCC--CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCc
Q 041908 409 FSGELPKQFLTGCV--SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQL 486 (883)
Q Consensus 409 l~~~ip~~~~~~l~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 486 (883)
.++...+.++. +|+.|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..
T Consensus 242 ---~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 242 ---DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317 (606)
T ss_dssp ---CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGG
T ss_pred ---ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCc
Confidence 11122222222 5667777777776666666777778888888888777 56777788888888888888888777
Q ss_pred chhhhCCCCCCEEECCCCcCCCCCCc-cccCCCcccEEecCCCcCcCcc--ccccccCCCcCeeecccCccccccchhhh
Q 041908 487 PHWVGNFSNLDVLLMSRNSLEGDVSV-PLSNLQVARILDISENKLYGPL--EFSFNHSSSLWHLFLHNNSLNGSIPSALF 563 (883)
Q Consensus 487 p~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 563 (883)
|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|++++..|..+.
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 77888888888888888888866654 4788888999999999888766 66788889999999999999888888899
Q ss_pred cCCCCCEEeccCCcCCccCCcc-ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCC-C--cccccccc
Q 041908 564 QSSQLMTLDLRDNEFSGNIPPL-INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI-P--SCFTNIWP 639 (883)
Q Consensus 564 ~~~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~-p--~~~~~~~~ 639 (883)
.+++|+.|++++|++++..|.. +..+++|++|++++|++++..|..+..+++|+.|++++|++++.. | ..+
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----- 472 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL----- 472 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG-----
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh-----
Confidence 9999999999999998876654 889999999999999999888999999999999999999887521 1 111
Q ss_pred cccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcC
Q 041908 640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL 719 (883)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 719 (883)
..+++|+.|||++|++
T Consensus 473 ----------------------------------------------------------------~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 473 ----------------------------------------------------------------QTLGRLEILVLSFCDL 488 (606)
T ss_dssp ----------------------------------------------------------------GGCTTCCEEECTTSCC
T ss_pred ----------------------------------------------------------------ccCCCccEEECCCCcc
Confidence 1267899999999999
Q ss_pred cccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908 720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK 799 (883)
Q Consensus 720 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~ 799 (883)
++.+|..|+.+++|+.|+|++|++++.+|..+++++.| .|||++|++++.+|..+..+++|+.+++++|+++|.++..+
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 99999999999999999999999999999999999999 99999999999999999999999999999999999888554
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-56 Score=548.41 Aligned_cols=558 Identities=19% Similarity=0.199 Sum_probs=380.4
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccc
Q 041908 88 KQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNK 167 (883)
Q Consensus 88 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~ 167 (883)
+++++|||++|.+.+..+..|.++++|++|+|++|...+. +++..|.++++|++|+|++|.+.+..|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~~~~p------------ 90 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIYFLHP------------ 90 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCCEECT------------
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCcccCH------------
Confidence 4566666666666655555566666666666666644433 433455555555555555555554444
Q ss_pred ccchhhhhcCCCCCCEEEccCCcCCCCCCcc--ccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccC
Q 041908 168 CREMNARICELKNLVELNLSWNKLDGSLPQC--LSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245 (883)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~ 245 (883)
..+.++++|++|+|++|.+++.+|.. ++++++|++|++++|.+++..+...|+++++|++|++++|.+++.
T Consensus 91 -----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~-- 163 (844)
T 3j0a_A 91 -----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV-- 163 (844)
T ss_dssp -----TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC--
T ss_pred -----hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee--
Confidence 44555555555555555555444433 555555555555555555332223455555555555555555432
Q ss_pred hHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcC--CCCCEEEccCCCCcCCcchHHHhc
Q 041908 246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQ--YDLRYIDLSHNNLAGTFPTWLLQN 323 (883)
Q Consensus 246 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~~ 323 (883)
.+..+..+ ++|+.|++++|.+.+..|..+. .
T Consensus 164 ----------------------------------------------~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~-~ 196 (844)
T 3j0a_A 164 ----------------------------------------------CEHELEPLQGKTLSFFSLAANSLYSRVSVDWG-K 196 (844)
T ss_dssp ----------------------------------------------CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC-S
T ss_pred ----------------------------------------------CHHHcccccCCccceEECCCCccccccccchh-h
Confidence 23333333 4555555555555544433211 1
Q ss_pred CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcC--CCCCcEEeCCCCcCCCCCCccccccCcccE
Q 041908 324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI--LPELVYLDMSQNSFEGSIPPSMGYTVRLLF 401 (883)
Q Consensus 324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 401 (883)
+++ +.....|++|++++|.+.+..+..+... .+.++.+.++.+.+...
T Consensus 197 ~~~-----------------~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~------------- 246 (844)
T 3j0a_A 197 CMN-----------------PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG------------- 246 (844)
T ss_dssp SSC-----------------TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS-------------
T ss_pred cCC-----------------ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc-------------
Confidence 110 0011134555555555555554444321 24567777765433211
Q ss_pred EeccCCcccCccchhHhhC--CCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccC
Q 041908 402 LDLSSNNFSGELPKQFLTG--CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479 (883)
Q Consensus 402 L~Ls~n~l~~~ip~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 479 (883)
+..+.+.+ .....+.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|++++..|..|..+++|++|++++
T Consensus 247 --~~~~~l~~-~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 247 --FGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp --SSCSSSTT-GGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred --ccccccCC-CChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 11223321 22222233 36899999999999888888888999999999999999988888899999999999999
Q ss_pred CccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccc
Q 041908 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIP 559 (883)
Q Consensus 480 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 559 (883)
|.+++..|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+++. ..+++|+.|++++|+++ .+|
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence 999988888999999999999999999888888899999999999999998753 23778999999999998 566
Q ss_pred hhhhcCCCCCEEeccCCcCCccC-CccccCCCCCcEEEccCCcccccCch-hhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908 560 SALFQSSQLMTLDLRDNEFSGNI-PPLINEDSNLRALLLRGNNLQGNIPQ-QLCHLRKIAIVDISYNLLDGSIPSCFTNI 637 (883)
Q Consensus 560 ~~~~~~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~~p~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 637 (883)
.. ..+++.|++++|++++.. +..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+.....-
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 43 467999999999998642 23456889999999999999865443 45668999999999999875433211000
Q ss_pred cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN 717 (883)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 717 (883)
. ...+++|+.|||++|
T Consensus 475 --------------------------------------------------------------~--~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 475 --------------------------------------------------------------V--FEGLSHLQVLYLNHN 490 (844)
T ss_dssp --------------------------------------------------------------C--SSCBCCEECCCCCHH
T ss_pred --------------------------------------------------------------h--hcCcccccEEECCCC
Confidence 0 012578899999999
Q ss_pred cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908 718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 797 (883)
+|++.+|..|+++++|+.|+|++|+|++.+|..+. ++|+.|||++|+|++.+|..+. +|+.+++++|++.|.++.
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL 565 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence 99999999999999999999999999988888776 8999999999999999998764 788999999999998875
Q ss_pred CccCCCCCCcccCCCcCCCCCCCCCCCCCC
Q 041908 798 TKQFANFDESNYRGNLNLCGPAVLKNCSTD 827 (883)
Q Consensus 798 ~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~ 827 (883)
.+ |......+|..+||.+....|..+
T Consensus 566 ~~----f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 566 ST----FINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp CS----HHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred HH----HHHHHHhcCcccccccccCccCCc
Confidence 43 222223467778887777778653
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-54 Score=513.31 Aligned_cols=534 Identities=18% Similarity=0.134 Sum_probs=464.3
Q ss_pred cceeecCCCCCC--CCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q 041908 69 WERIKCNVTTAN--YNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146 (883)
Q Consensus 69 w~gv~C~~~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls 146 (883)
+..+.|...... +..+ .+++++||+++|.+.+..|..|+++++|++|+|++|.+.+ +++..|+++++|++|+|+
T Consensus 14 ~~~~~c~~~~l~~iP~~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--IHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTS--CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcccCcCCC--CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccce--eChhhccCccccCeeeCC
Confidence 456788754331 2223 2479999999999999889999999999999999999987 444789999999999999
Q ss_pred CCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcC
Q 041908 147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFAN 226 (883)
Q Consensus 147 ~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 226 (883)
+|.+.+..| ..++++++|++|++++|++++..|..++++++|++|++++|++++ ++...+..
T Consensus 90 ~n~l~~~~~-----------------~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~ 151 (606)
T 3t6q_A 90 ANPLIFMAE-----------------TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFP 151 (606)
T ss_dssp TCCCSEECT-----------------TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCC
T ss_pred CCcccccCh-----------------hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccc-cCcccccC
Confidence 999988777 789999999999999999998778889999999999999999994 42235666
Q ss_pred CCCCCEEeccCCcCccccChHhhhcCCCCc--EEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCE
Q 041908 227 LTSLEYLSLSGNNFQGSFSLSVLANHSRLE--VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRY 304 (883)
Q Consensus 227 l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 304 (883)
+++|++|++++|.++ .++...++.+++|+ .|++++|.+....+..+...+|++|++++|. .++..+..+.+++.
T Consensus 152 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l 227 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTI 227 (606)
T ss_dssp CTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEE
T ss_pred CcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch---hHHHHhhhccccch
Confidence 999999999999998 45567899999999 8999999999888877777899999999997 45666777766655
Q ss_pred EEccCCCCc----CCcchHHHhcCC--CCcEEEcccccccccccC-CCCCCCccEEEccCCccccccchhhhcCCCCCcE
Q 041908 305 IDLSHNNLA----GTFPTWLLQNNT--KLEFLFLFNNFLKGLLHL-PDSKRDLLHLVISNNNFIGMLPDNFGMILPELVY 377 (883)
Q Consensus 305 L~Ls~n~l~----~~~p~~~~~~l~--~L~~L~L~~n~l~~~~~~-~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~ 377 (883)
..+....+. ..++...+..+. +|+.|++++|.+++++.. ...+++|++|++++|.+. .+|..+.. +++|++
T Consensus 228 ~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~ 305 (606)
T 3t6q_A 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKK 305 (606)
T ss_dssp EEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCE
T ss_pred hheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCE
Confidence 555433222 123333333443 799999999999887654 457899999999999987 78887765 899999
Q ss_pred EeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcC--cccccCCCCCCeEEccC
Q 041908 378 LDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQI--FPKYMSMTQLAWLYLND 455 (883)
Q Consensus 378 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~ 455 (883)
|++++|.+++..|..+..+++|++|++++|.+.+.+|...+..+++|++|++++|.+.+.. +..+..+++|++|++++
T Consensus 306 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 306 LVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp EECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCS
T ss_pred EECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCC
Confidence 9999999998888899999999999999999998999887889999999999999998876 77889999999999999
Q ss_pred cccCccccccccCCCCCCEEEccCCccCCCcch-hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc-
Q 041908 456 NQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPH-WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP- 533 (883)
Q Consensus 456 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~- 533 (883)
|++.+..|..+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccc
Confidence 999999999999999999999999999877654 489999999999999999999999999999999999999999873
Q ss_pred --cccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908 534 --LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC 611 (883)
Q Consensus 534 --~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~ 611 (883)
.+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++| +|++++|++++..|..+.
T Consensus 466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 23568899999999999999999889999999999999999999999999999999999 999999999999999999
Q ss_pred CCCCCCEEEcCCCcCCCCCC
Q 041908 612 HLRKIAIVDISYNLLDGSIP 631 (883)
Q Consensus 612 ~l~~L~~L~ls~N~l~~~~p 631 (883)
.+++|+.+++++|++.+..+
T Consensus 545 ~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 545 ILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHHTSSEEECTTCCEECSGG
T ss_pred cCCCCCEEeCCCCCccccCC
Confidence 99999999999999987655
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-54 Score=515.36 Aligned_cols=547 Identities=20% Similarity=0.159 Sum_probs=367.1
Q ss_pred eeecCCCCC--CCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q 041908 71 RIKCNVTTA--NYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN 148 (883)
Q Consensus 71 gv~C~~~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n 148 (883)
.|.|....- -+..+ .+++++|++++|.+.+..+..|.++++|++|+|++|.+++ +++..|.++++|++|+|++|
T Consensus 15 ~~~c~~~~l~~ip~~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET--IEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp EEECTTSCCSSCCTTS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTC
T ss_pred ceEccCCCcccCCCCC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc--cCHHHhhchhhcCEeECCCC
Confidence 577765322 12222 3789999999999988888889999999999999999887 55478999999999999999
Q ss_pred CCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCC
Q 041908 149 GLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANL 227 (883)
Q Consensus 149 ~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l 227 (883)
.+.+..| ..++++++|++|+|++|++++..+..++++++|++|++++|.+++ .+| ..++++
T Consensus 91 ~l~~~~p-----------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l 152 (606)
T 3vq2_A 91 PIQSFSP-----------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLP-AYFSNL 152 (606)
T ss_dssp CCCCCCT-----------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCC-GGGGTC
T ss_pred cccccCh-----------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceech-HhHhhc
Confidence 9887767 778899999999999999987777889999999999999999885 578 789999
Q ss_pred CCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEc
Q 041908 228 TSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL 307 (883)
Q Consensus 228 ~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 307 (883)
++|++|++++|++++. +...++.+++|+. .+++|++++|.+++..+..+... +|++|++
T Consensus 153 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~-------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L 211 (606)
T 3vq2_A 153 TNLVHVDLSYNYIQTI-TVNDLQFLRENPQ-------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTL 211 (606)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTHHHHHCTT-------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEE
T ss_pred CCCCEEEccCCcceec-Chhhhhhhhcccc-------------------ccceeeccCCCcceeCcccccCc-eeeeeec
Confidence 9999999999998854 3344544444331 12234444444444333333333 5666666
Q ss_pred cCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC
Q 041908 308 SHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG 387 (883)
Q Consensus 308 s~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 387 (883)
++|.+++......+.+++.|+.+++..+.+..... +. .+....+.
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-------l~-------~~~~~~~~--------------------- 256 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN-------LE-------IFEPSIME--------------------- 256 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC-------CS-------CCCGGGGT---------------------
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCc-------cc-------ccChHHhh---------------------
Confidence 66666533333333466666666554433322110 00 00001111
Q ss_pred CCCccccccCcccEEec-cCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccc
Q 041908 388 SIPPSMGYTVRLLFLDL-SSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGL 466 (883)
Q Consensus 388 ~~p~~l~~l~~L~~L~L-s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 466 (883)
.+..+ .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+| .+
T Consensus 257 ----~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~ 325 (606)
T 3vq2_A 257 ----GLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL 325 (606)
T ss_dssp ----TGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC
T ss_pred ----hhhhc-cHhheeccccccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC
Confidence 11111 2333444 33334333332 2233333333333333321 11 223334444444444444 2333 22
Q ss_pred cCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc--cccccccCCCc
Q 041908 467 LNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP--LEFSFNHSSSL 544 (883)
Q Consensus 467 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L 544 (883)
.+++|++|++++|. ..+.. .+..+++|++|++++|++++. .+..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~------------------------~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNK------------------------GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp -CCSSCCEEEEESCS------------------------SCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred -CCCccceeeccCCc------------------------Cccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence 44444555554443 32222 344555566666666655544 24556666677
Q ss_pred CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCC
Q 041908 545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY 623 (883)
Q Consensus 545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~ 623 (883)
++|++++|.+++ +|..+..+++|+.|++++|++++..| ..+..+++|++|++++|++++..|..+..+++|+.|++++
T Consensus 379 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 379 RHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp CEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred cEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCC
Confidence 777777777663 55667777788888888888777766 5777788888888888888877888888888888888888
Q ss_pred CcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccc
Q 041908 624 NLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK 702 (883)
Q Consensus 624 N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (883)
|++++. +|..+..
T Consensus 458 n~l~~~~~~~~~~~------------------------------------------------------------------ 471 (606)
T 3vq2_A 458 NSFKDNTLSNVFAN------------------------------------------------------------------ 471 (606)
T ss_dssp CEEGGGEECSCCTT------------------------------------------------------------------
T ss_pred CcCCCcchHHhhcc------------------------------------------------------------------
Confidence 887763 4443322
Q ss_pred ccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC-CC
Q 041908 703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN-YL 781 (883)
Q Consensus 703 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~-~L 781 (883)
+++|+.|||++|++++.+|..++.+++|++|+|++|++++.+|..++++++|+.|||++|+++ .+|..+..++ +|
T Consensus 472 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L 547 (606)
T 3vq2_A 472 ---TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSL 547 (606)
T ss_dssp ---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTC
T ss_pred ---CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccC
Confidence 567889999999999999999999999999999999999999999999999999999999999 6788899987 59
Q ss_pred cEEEccCCcCcccCCCCccCCCC
Q 041908 782 AIFNVSYNDLSGPTPNTKQFANF 804 (883)
Q Consensus 782 ~~l~ls~N~l~g~ip~~~~~~~~ 804 (883)
+++++++|++.|.+|..+...++
T Consensus 548 ~~l~l~~N~~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 548 AFFNLTNNSVACICEHQKFLQWV 570 (606)
T ss_dssp CEEECCSCCCCCSSTTHHHHTTT
T ss_pred cEEEccCCCcccCCccHHHHHHH
Confidence 99999999999998875544443
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.4e-52 Score=497.15 Aligned_cols=541 Identities=20% Similarity=0.167 Sum_probs=390.5
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908 91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170 (883)
Q Consensus 91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~ 170 (883)
++++.+++++.. +|..+. ++|++|+|++|.+++ ++...|.++++|++|++++|.+.+..|
T Consensus 14 ~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~i~~--------------- 73 (606)
T 3vq2_A 14 ITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIED--------------- 73 (606)
T ss_dssp TEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCCEECT---------------
T ss_pred CceEccCCCccc-CCCCCC--CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCcccccCH---------------
Confidence 467777777655 344333 567777777777665 444566666666666666666655444
Q ss_pred hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250 (883)
Q Consensus 171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~ 250 (883)
..+.++++|++|+|++|++++..|..|+++++|++|++++|.++ .+|...++++++|++|++++|.+++
T Consensus 74 --~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-------- 142 (606)
T 3vq2_A 74 --KAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHS-------- 142 (606)
T ss_dssp --TTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSSCCCC--------
T ss_pred --HHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCCcccc--------
Confidence 55666666666666666666555666666666666666666666 3332445555555555555555441
Q ss_pred cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEE
Q 041908 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFL 330 (883)
Q Consensus 251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 330 (883)
..+|..++.+++|++|++++|.+++..|..+. .+++|+
T Consensus 143 ---------------------------------------~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~-- 180 (606)
T 3vq2_A 143 ---------------------------------------CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ-FLRENP-- 180 (606)
T ss_dssp ---------------------------------------CCCCGGGGTCTTCCEEECCSSCCCEECTTTTH-HHHHCT--
T ss_pred ---------------------------------------eechHhHhhcCCCCEEEccCCcceecChhhhh-hhhccc--
Confidence 13466777888888888888888754444322 222111
Q ss_pred EcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCC-CCCCccccccCcccEEeccCCcc
Q 041908 331 FLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFE-GSIPPSMGYTVRLLFLDLSSNNF 409 (883)
Q Consensus 331 ~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l 409 (883)
..++++++++|.+.+..+..+. ..+|++|++++|.+. +.+|..+..++.|+.+++..+.+
T Consensus 181 -----------------~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 181 -----------------QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp -----------------TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred -----------------cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 0133555555655543333332 225555555555554 23344455555555555443332
Q ss_pred cCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEc-cCcccCccccccccCCCCCCEEEccCCccCCCcch
Q 041908 410 SGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL-NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPH 488 (883)
Q Consensus 410 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 488 (883)
.+.. .+. .+....+..+..+ .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+|
T Consensus 242 ~~~~---------~l~-------~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~- 301 (606)
T 3vq2_A 242 KDER---------NLE-------IFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE- 301 (606)
T ss_dssp TTSC---------CCS-------CCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-
T ss_pred ccCC---------ccc-------ccChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-
Confidence 2100 000 0011112222222 4667777 77888888887 888999999999999997 566
Q ss_pred hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccc--cchhhhcCC
Q 041908 489 WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS--IPSALFQSS 566 (883)
Q Consensus 489 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~~~~~~ 566 (883)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|+..+.+ .+..+++|++|++++|.+++. +|..+..++
T Consensus 302 ~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~ 376 (606)
T 3vq2_A 302 DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376 (606)
T ss_dssp CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS
T ss_pred hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC
Confidence 788999999999999999 6777 45 9999999999999765544 577899999999999999876 488999999
Q ss_pred CCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCC
Q 041908 567 QLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGD 645 (883)
Q Consensus 567 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~ 645 (883)
+|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|+.|++++|++++..|..+..
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------- 446 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------- 446 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT---------
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC---------
Confidence 99999999999985 67889999999999999999998888 68999999999999999998877765533
Q ss_pred CCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcc-cCc
Q 041908 646 PFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG-EIP 724 (883)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g-~ip 724 (883)
+++|+.|++++|++++ .+|
T Consensus 447 ------------------------------------------------------------l~~L~~L~l~~n~l~~~~~~ 466 (606)
T 3vq2_A 447 ------------------------------------------------------------LTSLNTLKMAGNSFKDNTLS 466 (606)
T ss_dssp ------------------------------------------------------------CTTCCEEECTTCEEGGGEEC
T ss_pred ------------------------------------------------------------CCCCCEEECCCCcCCCcchH
Confidence 5678999999999998 478
Q ss_pred ccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC-ccCC-
Q 041908 725 SAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT-KQFA- 802 (883)
Q Consensus 725 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~- 802 (883)
..++.+++|++|+|++|++++.+|..++++++|++|||++|++++.+|..+.++++|+.|++++|+++. +|.. ..+.
T Consensus 467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~ 545 (606)
T 3vq2_A 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPK 545 (606)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCT
T ss_pred HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999994 6765 2332
Q ss_pred CCCCcccCCCcCCCCCC
Q 041908 803 NFDESNYRGNLNLCGPA 819 (883)
Q Consensus 803 ~~~~~~~~gn~~lc~~~ 819 (883)
++....+.|||..|..+
T Consensus 546 ~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 546 SLAFFNLTNNSVACICE 562 (606)
T ss_dssp TCCEEECCSCCCCCSST
T ss_pred cCcEEEccCCCcccCCc
Confidence 34555788999998654
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-52 Score=508.81 Aligned_cols=523 Identities=19% Similarity=0.200 Sum_probs=372.8
Q ss_pred ccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccC
Q 041908 166 NKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245 (883)
Q Consensus 166 n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~ 245 (883)
+.++.+|. -.++|++|+|++|.+++..|..|+++++|++|+|++|...+.++...|+++++|++|+|++|.+++..|
T Consensus 14 ~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 34455554 346677777777777766666777777777777777755556644667777777777777777664323
Q ss_pred hHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchh--hhcCCCCCEEEccCCCCcCCcchHHHhc
Q 041908 246 LSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSF--LQYQYDLRYIDLSHNNLAGTFPTWLLQN 323 (883)
Q Consensus 246 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~~ 323 (883)
..+.++++|++|++++|.+ ++.+|.. +..+++|++|++++|.+++..|...+.+
T Consensus 91 -~~~~~l~~L~~L~Ls~n~l-----------------------~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 146 (844)
T 3j0a_A 91 -DAFQGLFHLFELRLYFCGL-----------------------SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK 146 (844)
T ss_dssp -TSSCSCSSCCCEECTTCCC-----------------------SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred -hHccCCcccCEeeCcCCCC-----------------------CcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence 4455555555555544444 3333222 4445555555555555543333222234
Q ss_pred CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCC--CCCcEEeCCCCcCCCCCCccccccCc---
Q 041908 324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMIL--PELVYLDMSQNSFEGSIPPSMGYTVR--- 398 (883)
Q Consensus 324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~--- 398 (883)
+++|++|++++|.++ +..+..+.. + ++|+.|+++.|.+.+..|..++.+++
T Consensus 147 L~~L~~L~Ls~N~i~-----------------------~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIF-----------------------LVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp CSSCCEEEEESSCCC-----------------------CCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCCEEECCCCcCC-----------------------eeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccc
Confidence 444444444443333 223333321 2 34444444444444444444333333
Q ss_pred ---ccEEeccCCcccCccchhHhhC--CCCCCEEEcc---------CcccCCcCcccccCC--CCCCeEEccCcccCccc
Q 041908 399 ---LLFLDLSSNNFSGELPKQFLTG--CVSLAFMNVS---------HNYFGGQIFPKYMSM--TQLAWLYLNDNQFTGRL 462 (883)
Q Consensus 399 ---L~~L~Ls~n~l~~~ip~~~~~~--l~~L~~L~Ls---------~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~ 462 (883)
|++|++++|.+++.++..+... ..+++.+.++ .+.+.+.....+..+ ++|+.|++++|.+.+..
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 5555555555554444443322 1344555544 233333333444443 78999999999999999
Q ss_pred cccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCC
Q 041908 463 EEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSS 542 (883)
Q Consensus 463 ~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 542 (883)
+..+..+++|+.|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..|..++
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999999988888899999
Q ss_pred CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccC-chhhcCCCCCCEEEc
Q 041908 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI-PQQLCHLRKIAIVDI 621 (883)
Q Consensus 543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~-p~~l~~l~~L~~L~l 621 (883)
+|+.|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.- +..+..+++|+.|++
T Consensus 363 ~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 363 KLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 99999999999984 33 3789999999999999 56654 467999999999998642 345678999999999
Q ss_pred CCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccc
Q 041908 622 SYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY 701 (883)
Q Consensus 622 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (883)
++|++++..+....
T Consensus 434 s~N~l~~~~~~~~~------------------------------------------------------------------ 447 (844)
T 3j0a_A 434 NQNRFSSCSGDQTP------------------------------------------------------------------ 447 (844)
T ss_dssp ESCCCCCCCSSSSS------------------------------------------------------------------
T ss_pred CCCccccccccccc------------------------------------------------------------------
Confidence 99999865433110
Q ss_pred cccccccccEEEccCCcCc-----ccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcccc
Q 041908 702 KGGVLEYMTGLDLSSNELT-----GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELS 776 (883)
Q Consensus 702 ~~~~l~~L~~LdLs~N~l~-----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~ 776 (883)
..+++|+.|+|++|.++ +..|..|.++++|++|+|++|++++.+|..|+++++|+.|||++|+|++..|..+.
T Consensus 448 --~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 448 --SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp --CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred --ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 11467899999999997 45567789999999999999999999999999999999999999999988887776
Q ss_pred CCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcCCCCCCC
Q 041908 777 ELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPAV 820 (883)
Q Consensus 777 ~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~~ 820 (883)
++|+.||+++|+++|.+|.. |..+....+.|||..|..+.
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred --ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 89999999999999999865 45666677899999996543
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.5e-52 Score=490.83 Aligned_cols=496 Identities=17% Similarity=0.179 Sum_probs=334.2
Q ss_pred cHHHHHHHHHhhhcCCcCCcc--cccCCccCCCCCCCCCCCCcc---ceeecCCCCCCCCCCcCCCCCCEEECCCCCCCC
Q 041908 28 LDNERIGLLEIKTFIKSVSDM--QFADAILVSWVDNRTSDCCSW---ERIKCNVTTANYNNNGSLKQLKILNIGFNSFSE 102 (883)
Q Consensus 28 ~~~~~~all~~k~~~~~~~~~--~~~~~~l~sW~~~~~~~cc~w---~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 102 (883)
...|++||.++|+++..+... +.+.....+| +. +++||.| .||+|+.. .+++.|+|+++++.|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W-~~-~~~~c~w~~~~GV~C~~~----------~~V~~L~L~~~~l~g 95 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANW-NF-NKELDMWGAQPGVSLNSN----------GRVTGLSLEGFGASG 95 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCC-CC-SSCGGGTTCCTTEEECTT----------CCEEEEECTTSCCEE
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCC-CC-CCCcccccCCCCeEEcCC----------CCEEEEEecCcccCC
Confidence 457999999999998654211 0012345689 33 4799999 99999754 279999999999999
Q ss_pred CCchhhcCCCCCCEEeCCCCCCCCC-----------CCCCCCCCCCCCCCEEECCCCCCCCccccccccc----------
Q 041908 103 SLVPLLTSLTSLTSLFLEGNNLGVG-----------FKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKL---------- 161 (883)
Q Consensus 103 ~~~~~l~~l~~L~~L~Ls~n~l~~~-----------~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L---------- 161 (883)
.+|+.++++++|++|+|++|.+... .+|. . .+..|+ +++++|.+.+.+|..+..+
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~-~--~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~ 171 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD-E--QKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ 171 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCH-H--HHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchH-H--HHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence 9999999999999999999976211 0221 1 144566 7777777777666444321
Q ss_pred ---------------h--hhcccccchhhhhcCCCCCCEEEccCCcCCCC-----------------CCcccc--CCCCC
Q 041908 162 ---------------E--LLNNKCREMNARICELKNLVELNLSWNKLDGS-----------------LPQCLS--NLTYL 205 (883)
Q Consensus 162 ---------------~--~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L 205 (883)
. ...|+++++|..++++++|++|+|++|.+++. +|+.++ ++++|
T Consensus 172 ~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 172 QKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp SCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 1 11456667777788888888888888888875 788877 88888
Q ss_pred CEEEccCCccccccChhhhcCCCCCCEEeccCCc-Ccc-ccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEc
Q 041908 206 RVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN-FQG-SFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNL 283 (883)
Q Consensus 206 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-l~g-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L 283 (883)
++|++++|.+.|.+| ..++++++|++|++++|+ ++| .+|. .++++. ....+++|++|++
T Consensus 252 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~~l~~~~lp~-~~~~L~-----------------~~~~l~~L~~L~L 312 (636)
T 4eco_A 252 TDVEVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKD-DWQALA-----------------DAPVGEKIQIIYI 312 (636)
T ss_dssp CEEEEECCTTCSSCC-TTTTTCSSCCEEECTTCTTSCHHHHHH-HHHHHH-----------------HSGGGGTCCEEEC
T ss_pred CEEEecCCcCCccCh-HHHhcCCCCCEEECcCCCCCccccchH-HHHhhh-----------------ccccCCCCCEEEC
Confidence 888888888887888 778888888888888887 776 5663 333330 0001124455555
Q ss_pred ccCcCCccCch--hhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCC-ccEEEccCCcc
Q 041908 284 RRCNISGTIPS--FLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRD-LLHLVISNNNF 360 (883)
Q Consensus 284 ~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-L~~L~ls~n~l 360 (883)
++|.++ .+|. .++.+++|++|++++|.++|.+| . +..+++|++|++++|.++.++.....+++ |++|++++|.+
T Consensus 313 ~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 313 GYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC
T ss_pred CCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC
Confidence 666666 5666 77788888888888888887777 3 34677777777777777755444445666 77777777776
Q ss_pred ccccchhhhc-CCCCCcEEeCCCCcCCCCCCcccc-------ccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCc
Q 041908 361 IGMLPDNFGM-ILPELVYLDMSQNSFEGSIPPSMG-------YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHN 432 (883)
Q Consensus 361 ~~~~p~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 432 (883)
. .+|..+.. .+++|++|++++|.+++.+|..+. .+++|++|++++|.++ .+|..++..+++|++|++++|
T Consensus 390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSS
T ss_pred c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCC
Confidence 6 56665532 123677777777777777777666 6667777777777777 677766666677777777777
Q ss_pred ccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhh--CCCCCCEEECCCCcCCCCC
Q 041908 433 YFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG--NFSNLDVLLMSRNSLEGDV 510 (883)
Q Consensus 433 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~L~L~~n~l~~~~ 510 (883)
+++ .+|....... +..+.++++|++|++++|.++ .+|..+. .+++|++|++++|++++ +
T Consensus 468 ~l~-~i~~~~~~~~----------------~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 468 MLT-EIPKNSLKDE----------------NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp CCS-BCCSSSSEET----------------TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred CCC-CcCHHHhccc----------------cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 666 3332211100 001122336777777777776 5666665 67777777777777776 6
Q ss_pred CccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCC
Q 041908 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDS 590 (883)
Q Consensus 511 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 590 (883)
|..+.++++|+.|++++|+ ++++|++.+.+|..+.++++|++|+|++|++ +.+|..+. +
T Consensus 529 p~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~ 587 (636)
T 4eco_A 529 PTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--P 587 (636)
T ss_dssp CCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--T
T ss_pred ChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--C
Confidence 6667777777777776664 4556666666777777777777777777777 46666554 6
Q ss_pred CCcEEEccCCccc
Q 041908 591 NLRALLLRGNNLQ 603 (883)
Q Consensus 591 ~L~~L~L~~N~l~ 603 (883)
+|++|++++|++.
T Consensus 588 ~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 588 NISVLDIKDNPNI 600 (636)
T ss_dssp TCCEEECCSCTTC
T ss_pred cCCEEECcCCCCc
Confidence 7777777777665
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-50 Score=486.25 Aligned_cols=515 Identities=16% Similarity=0.157 Sum_probs=312.5
Q ss_pred CCCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCC---CCCC--Ccc------------ceeecCCCCCCCCCCcCC
Q 041908 25 KSCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNR---TSDC--CSW------------ERIKCNVTTANYNNNGSL 87 (883)
Q Consensus 25 ~~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~---~~~c--c~w------------~gv~C~~~~~~~~~l~~l 87 (883)
.++..+|++||++||+++.++ +|.... ..+| |.| .||+|+..
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~---------- 322 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN---------- 322 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT----------
T ss_pred cccchHHHHHHHHHHHHcCCC-----------CCCcCCCcccccCCccccccccccccccCcCceEecCC----------
Confidence 345678999999999999432 673221 1355 999 99999862
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEeC-CCCCCCCCCCCCCCCCC---CCCCC--E---------EEC-CCCCCC
Q 041908 88 KQLKILNIGFNSFSESLVPLLTSLTSLTSLFL-EGNNLGVGFKPMKVLPN---LRNLE--V---------LDL-SGNGLI 151 (883)
Q Consensus 88 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~ip~~~l~~---l~~L~--~---------L~L-s~n~l~ 151 (883)
.+++.|+|+++++.|.+|+.++++++|++|+| ++|.+.|. .|...... +...+ . ++. ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 27999999999999999999999999999999 88877764 33211110 00000 0 000 000000
Q ss_pred Ccc-----------------ccccccchh--hcccccchhhhhcCCCCCCEEEccCCcCCC-----------------CC
Q 041908 152 GSL-----------------TMQGEKLEL--LNNKCREMNARICELKNLVELNLSWNKLDG-----------------SL 195 (883)
Q Consensus 152 ~~~-----------------~~~l~~L~~--~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-----------------~~ 195 (883)
+.+ ...+..+.+ ..|++.++|..++++++|++|+|++|++++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 000 011112222 246677778999999999999999999998 38
Q ss_pred Ccccc--CCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCc-Ccc-ccChHhhhcCCCCcEEEccCcccccCCCC
Q 041908 196 PQCLS--NLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNN-FQG-SFSLSVLANHSRLEVLQISRLQIETENFP 271 (883)
Q Consensus 196 p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-l~g-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 271 (883)
|+.++ ++++|++|+|++|.+.+.+| ..++++++|++|++++|+ ++| .+|.. +.+++ ..
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~----------------~~ 543 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKAD-WTRLA----------------DD 543 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHH----------------HC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHH-HHhhh----------------hc
Confidence 88877 99999999999999888899 788999999999999998 887 66642 33322 01
Q ss_pred CCCCccceEEEcccCcCCccCch--hhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCC
Q 041908 272 WLPRFQLKVLNLRRCNISGTIPS--FLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRD 349 (883)
Q Consensus 272 ~~~~~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 349 (883)
....++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+| . +..+++|+.|++++|.+..++.....+++
T Consensus 544 ~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~ 619 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTD 619 (876)
T ss_dssp TTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEECCSSCCSCCCTTSCEECT
T ss_pred ccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEECcCCccccchHHHhhccc
Confidence 112234555666666666 5666 6777777777777777777 666 2 33566666666666666544333334444
Q ss_pred -ccEEEccCCccccccchhhhcCC--CCCcEEeCCCCcCCCCCCccc---c--ccCcccEEeccCCcccCccchhHhhCC
Q 041908 350 -LLHLVISNNNFIGMLPDNFGMIL--PELVYLDMSQNSFEGSIPPSM---G--YTVRLLFLDLSSNNFSGELPKQFLTGC 421 (883)
Q Consensus 350 -L~~L~ls~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l---~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l 421 (883)
|++|++++|.+. .+|..+.. + ++|+.|++++|++.+.+|... . .+++|+.|++++|.+. .+|..++..+
T Consensus 620 ~L~~L~Ls~N~L~-~lp~~~~~-~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l 696 (876)
T 4ecn_A 620 QVEGLGFSHNKLK-YIPNIFNA-KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATG 696 (876)
T ss_dssp TCCEEECCSSCCC-SCCSCCCT-TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTT
T ss_pred cCCEEECcCCCCC-cCchhhhc-cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccC
Confidence 555555555554 44443322 2 225555555555554333211 1 1224455555555554 4444444444
Q ss_pred CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhh--CCCCCCEE
Q 041908 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG--NFSNLDVL 499 (883)
Q Consensus 422 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~L 499 (883)
++|+.|++++|.++ .+|..+.... +..+.++++|+.|++++|.++ .+|..+. .+++|+.|
T Consensus 697 ~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 697 SPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEE
T ss_pred CCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEE
Confidence 44444444444443 2221111000 000112235666666666655 4555554 55666666
Q ss_pred ECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC
Q 041908 500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS 579 (883)
Q Consensus 500 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~ 579 (883)
++++|++++ +|..+..+++|+.|++++|+ ++++|++.+.+|..+.++++|+.|+|++|++
T Consensus 759 ~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L- 818 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI- 818 (876)
T ss_dssp ECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred EeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-
Confidence 666666655 45555566666666665554 4455777777777777778888888888887
Q ss_pred ccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcC
Q 041908 580 GNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLL 626 (883)
Q Consensus 580 ~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l 626 (883)
+.+|..+. ++|+.|+|++|++...-+..++....+..+.+.+|+.
T Consensus 819 ~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 819 RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 56777654 5788888888877765556665555555556666554
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-49 Score=466.04 Aligned_cols=524 Identities=19% Similarity=0.161 Sum_probs=347.5
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908 91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170 (883)
Q Consensus 91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~ 170 (883)
++.+.++.++.. +|..+. +++++|+|++|.+++ ++...|.++++|++|||++|.+.+..+
T Consensus 10 ~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~i~~--------------- 69 (570)
T 2z63_A 10 ITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQTIED--------------- 69 (570)
T ss_dssp TEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCCEECT---------------
T ss_pred cEEEeCCCCccc-cCCCcc--ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCCccCc---------------
Confidence 345555544433 233221 345555555555544 333345555555555555554443322
Q ss_pred hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhh
Q 041908 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLA 250 (883)
Q Consensus 171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~ 250 (883)
..+.++++|++|+|++|++++..|..|+++++|++|++++|+++ .+|...++++++|++|++++|.++
T Consensus 70 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~--------- 137 (570)
T 2z63_A 70 --GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ--------- 137 (570)
T ss_dssp --TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCC---------
T ss_pred --ccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCCccc---------
Confidence 33444455555555555544444444444555555555555444 333223444444444444444433
Q ss_pred cCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCc-cCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcE
Q 041908 251 NHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISG-TIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEF 329 (883)
Q Consensus 251 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~ 329 (883)
+ .+|..+..+++|++|++++|.+++..|..+. .+++|..
T Consensus 138 ---------------------------------------~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~ 177 (570)
T 2z63_A 138 ---------------------------------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPL 177 (570)
T ss_dssp ---------------------------------------CCCCCGGGGGCTTCCEEECTTSCCCEECGGGGH-HHHTCTT
T ss_pred ---------------------------------------eecChhhhcccCCCCEEeCcCCccceecHHHcc-chhccch
Confidence 2 2456666677777777777777643333322 3333300
Q ss_pred EEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC-CCCccccccCcccEEeccCCc
Q 041908 330 LFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG-SIPPSMGYTVRLLFLDLSSNN 408 (883)
Q Consensus 330 L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~ 408 (883)
..+++++++|.+.+..|..+. ..+|++|++++|.... .++..+..++.++.+.+....
T Consensus 178 -------------------~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~ 236 (570)
T 2z63_A 178 -------------------LNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236 (570)
T ss_dssp -------------------CCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred -------------------hhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeecccc
Confidence 002344444444444444433 2356677776664321 234445555555555544322
Q ss_pred ccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCc-ccCccccccccCCCCCCEEEccCCccCCCcc
Q 041908 409 FSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN-QFTGRLEEGLLNAPSLHILDVSNNMLSGQLP 487 (883)
Q Consensus 409 l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 487 (883)
+.. ...++ .+... ....+..+ .++.+++.++ .+.+..|..+..+++|++|++++|.+. .+|
T Consensus 237 ~~~---------~~~l~--~~~~~-----~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~ 298 (570)
T 2z63_A 237 FRN---------EGNLE--KFDKS-----ALEGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK 298 (570)
T ss_dssp CCC---------CSSCE--ECCTT-----TTGGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCC
T ss_pred ccC---------chhhh--hcchh-----hhcccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhh
Confidence 210 00111 00111 11111111 3566777776 667777788888888888888888887 577
Q ss_pred hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccccc--chhhhcC
Q 041908 488 HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI--PSALFQS 565 (883)
Q Consensus 488 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~~ 565 (883)
..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+
T Consensus 299 ~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 372 (570)
T 2z63_A 299 DFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372 (570)
T ss_dssp BCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTC
T ss_pred hhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccccc
Confidence 778777 8889999888887 4454 4678889999999988776664 67889999999999988654 7889999
Q ss_pred CCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCC
Q 041908 566 SQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEG 644 (883)
Q Consensus 566 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~ 644 (883)
++|++|++++|++++..+. +..+++|++|++++|++.+..| ..+..+++|+.|++++|.+++..|..+..
T Consensus 373 ~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------- 443 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-------- 443 (570)
T ss_dssp SCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT--------
T ss_pred CccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc--------
Confidence 9999999999999965444 8999999999999999998766 57889999999999999998776655432
Q ss_pred CCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc-ccC
Q 041908 645 DPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT-GEI 723 (883)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-g~i 723 (883)
+++|+.|+|++|+++ +.+
T Consensus 444 -------------------------------------------------------------l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 444 -------------------------------------------------------------LSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp -------------------------------------------------------------CTTCCEEECTTCEEGGGEE
T ss_pred -------------------------------------------------------------CCcCcEEECcCCcCccccc
Confidence 567899999999998 689
Q ss_pred cccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccC
Q 041908 724 PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF 801 (883)
Q Consensus 724 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 801 (883)
|..++.+++|++|+|++|++++.+|..|+++++|++|++++|++++.+|..+.++++|+.+++++|+++|.+|..+.+
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987554
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.6e-48 Score=457.21 Aligned_cols=498 Identities=21% Similarity=0.198 Sum_probs=415.2
Q ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccc
Q 041908 88 KQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNK 167 (883)
Q Consensus 88 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~ 167 (883)
+++++||+++|.+.+..+..|.++++|++|+|++|.+.+ ++...|+++++|++|+|++|.+.+..|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--i~~~~~~~l~~L~~L~L~~n~l~~~~~------------ 93 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLAL------------ 93 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECT------------
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc--cCcccccCchhCCEEeCcCCcCCccCH------------
Confidence 579999999999999888899999999999999999987 665789999999999999999987666
Q ss_pred ccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccCh
Q 041908 168 CREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSL 246 (883)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~ 246 (883)
..+.++++|++|++++|++++..+..++++++|++|++++|.+++ .+| ..|+++++|++|++++|++++ ++.
T Consensus 94 -----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~~-~~~ 166 (570)
T 2z63_A 94 -----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQS-IYC 166 (570)
T ss_dssp -----TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCCE-ECG
T ss_pred -----hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccce-ecH
Confidence 778999999999999999997666679999999999999999985 478 789999999999999999984 444
Q ss_pred HhhhcCCCC----cEEEccCcccccCCCCCCCCccceEEEcccCcCC-ccCchhhhcCCCCCEEEccCCCCcCCcchHHH
Q 041908 247 SVLANHSRL----EVLQISRLQIETENFPWLPRFQLKVLNLRRCNIS-GTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLL 321 (883)
Q Consensus 247 ~~l~~l~~L----~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 321 (883)
..++.+++| +.+++++|.+....+..+...+|++|++++|... ..++..+..+++++..++....+..
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~------- 239 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN------- 239 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC-------
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC-------
Confidence 667777777 7888888887766655555557777777776543 2345556666666665554332221
Q ss_pred hcCCCCcEEEcccccccccccCCCCCCCccEEEccCC-ccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCccc
Q 041908 322 QNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNN-NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLL 400 (883)
Q Consensus 322 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n-~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 400 (883)
...++ .+....+.+.. --.++.++++++ .+.+..|..+.. +++|++|++++|.++ .+|..+..+ +|+
T Consensus 240 --~~~l~--~~~~~~~~~l~-----~l~l~~l~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~-~l~~~~~~~-~L~ 307 (570)
T 2z63_A 240 --EGNLE--KFDKSALEGLC-----NLTIEEFRLAYLDYYLDDIIDLFNC-LTNVSSFSLVSVTIE-RVKDFSYNF-GWQ 307 (570)
T ss_dssp --CSSCE--ECCTTTTGGGG-----GSEEEEEEEEETTEEESCSTTTTGG-GTTCSEEEEESCEEC-SCCBCCSCC-CCS
T ss_pred --chhhh--hcchhhhcccc-----ccchhhhhhhcchhhhhhchhhhcC-cCcccEEEecCccch-hhhhhhccC-Ccc
Confidence 01111 01111111110 113567777777 677777877765 899999999999998 688888888 999
Q ss_pred EEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccc--cccccCCCCCCEEEcc
Q 041908 401 FLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRL--EEGLLNAPSLHILDVS 478 (883)
Q Consensus 401 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls 478 (883)
+|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|+++
T Consensus 308 ~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~ 381 (570)
T 2z63_A 308 HLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381 (570)
T ss_dssp EEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred EEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence 9999999998 7776 4689999999999998877655 67899999999999998664 6788899999999999
Q ss_pred CCccCCCcchhhhCCCCCCEEECCCCcCCCCCC-ccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc-c
Q 041908 479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN-G 556 (883)
Q Consensus 479 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~ 556 (883)
+|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +
T Consensus 382 ~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 382 FNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp SCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 999986544 49999999999999999998766 56889999999999999999999999999999999999999998 6
Q ss_pred ccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCc
Q 041908 557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPS 632 (883)
Q Consensus 557 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 632 (883)
.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7899999999999999999999999899999999999999999999998888899999999999999999998875
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-47 Score=448.44 Aligned_cols=485 Identities=18% Similarity=0.177 Sum_probs=309.7
Q ss_pred CCccceeecCCCCCCCCCC--cCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEE
Q 041908 66 CCSWERIKCNVTTANYNNN--GSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143 (883)
Q Consensus 66 cc~w~gv~C~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L 143 (883)
.|.|.|+ |+....+...+ .-.++|++|++++|.+.+..|..|.++++|++|+|++|++.+ ++++.|+++++|++|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHL 79 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE--ECTTTTTTCTTCCEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc--cChhhccccccCCEE
Confidence 4999998 86543211111 112456666666666655555556666666666666666554 333455566666666
Q ss_pred ECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCccccccChh
Q 041908 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVLDLTSNQLSGNLPIS 222 (883)
Q Consensus 144 ~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~ 222 (883)
|+++|.+.+..+ ..++++++|++|+|++|.+++ ..|..++++++|++|++++|.+.+.+|..
T Consensus 80 ~Ls~n~l~~~~~-----------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 142 (549)
T 2z81_A 80 DLSDNHLSSLSS-----------------SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142 (549)
T ss_dssp ECTTSCCCSCCH-----------------HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred ECCCCccCccCH-----------------HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh
Confidence 666665554443 445555566666666655554 23445555555555555555533345434
Q ss_pred hhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCC
Q 041908 223 VFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302 (883)
Q Consensus 223 ~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 302 (883)
.++++++|++|++++|++++ ..|..+..+++|
T Consensus 143 ~~~~l~~L~~L~L~~n~l~~------------------------------------------------~~~~~l~~l~~L 174 (549)
T 2z81_A 143 DFAGLTSLNELEIKALSLRN------------------------------------------------YQSQSLKSIRDI 174 (549)
T ss_dssp TTTTCCEEEEEEEEETTCCE------------------------------------------------ECTTTTTTCSEE
T ss_pred hhhcccccCeeeccCCcccc------------------------------------------------cChhhhhccccC
Confidence 45555555555555555543 333444444444
Q ss_pred CEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccc----cCCCCCCCccEEEccCCccccccchhhh---cCCCCC
Q 041908 303 RYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLL----HLPDSKRDLLHLVISNNNFIGMLPDNFG---MILPEL 375 (883)
Q Consensus 303 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~L~~L~ls~n~l~~~~p~~~~---~~l~~L 375 (883)
++|++++|.+. .+|.+++..+++|++|++++|.+++.. .....+++|++|++++|.+.+..+..+. ..+++|
T Consensus 175 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 175 HHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred ceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 44444444443 444444444555555555555554432 1122455666666666666655444332 225677
Q ss_pred cEEeCCCCcCCCCC------CccccccCcccEEeccCCcccCc-----cchhHhhCCCCCCEEEccCcccCCcCcccc-c
Q 041908 376 VYLDMSQNSFEGSI------PPSMGYTVRLLFLDLSSNNFSGE-----LPKQFLTGCVSLAFMNVSHNYFGGQIFPKY-M 443 (883)
Q Consensus 376 ~~L~L~~n~l~~~~------p~~l~~l~~L~~L~Ls~n~l~~~-----ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~ 443 (883)
+.+++++|.+.+.. ...+..+.+|+.|++.++.+... ++. ++....+|+.|++++|.+. .+|..+ .
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~-~~~~~~~L~~L~l~~n~l~-~ip~~~~~ 331 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-VYSLLEKVKRITVENSKVF-LVPCSFSQ 331 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH-HHHHSTTCCEEEEESSCCC-CCCHHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchh-hhhhcccceEEEeccCccc-cCCHHHHh
Confidence 77777777665421 12345566777777777765421 111 1234567888888888776 345444 4
Q ss_pred CCCCCCeEEccCcccCccccc---cccCCCCCCEEEccCCccCCCcc--hhhhCCCCCCEEECCCCcCCCCCCccccCCC
Q 041908 444 SMTQLAWLYLNDNQFTGRLEE---GLLNAPSLHILDVSNNMLSGQLP--HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQ 518 (883)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 518 (883)
.+++|++|++++|++++.+|. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 678888888888888876643 36677888888888888875432 45788888999999998888 5677788888
Q ss_pred cccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEcc
Q 041908 519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLR 598 (883)
Q Consensus 519 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 598 (883)
+|++|++++|++++.. ..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|+|+
T Consensus 411 ~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls 481 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKIS 481 (549)
T ss_dssp TCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECC
T ss_pred cccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecC
Confidence 8999999999886432 222 258999999999998643 47889999999999998 6776 4678999999999
Q ss_pred CCcccccCchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP 631 (883)
Q Consensus 599 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p 631 (883)
+|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 482 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999888889999999999999999988776
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.6e-47 Score=448.16 Aligned_cols=487 Identities=18% Similarity=0.195 Sum_probs=356.1
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEc
Q 041908 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQI 260 (883)
Q Consensus 181 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L 260 (883)
....++++++++ .+|..+. ++|++|++++|++++..| ..|+++++|++|++++|++++ ++...+.++++|+
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~---- 77 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINT-IEGDAFYSLGSLE---- 77 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCC----
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCc-cChhhccccccCC----
Confidence 334566677776 5665553 677777777777774444 667777777777777777663 2223333333333
Q ss_pred cCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcC-CcchHHHhcCCCCcEEEcccccccc
Q 041908 261 SRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAG-TFPTWLLQNNTKLEFLFLFNNFLKG 339 (883)
Q Consensus 261 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~ 339 (883)
+|++++|.+++..|..++.+++|++|++++|.+++ .+|..
T Consensus 78 -------------------~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------------------- 118 (549)
T 2z81_A 78 -------------------HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-------------------- 118 (549)
T ss_dssp -------------------EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCS--------------------
T ss_pred -------------------EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhh--------------------
Confidence 33334444444455556666666666666666653 12222
Q ss_pred cccCCCCCCCccEEEccCCccccccch-hhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHh
Q 041908 340 LLHLPDSKRDLLHLVISNNNFIGMLPD-NFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFL 418 (883)
Q Consensus 340 ~~~~~~~~~~L~~L~ls~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~ 418 (883)
...+++|++|++++|.+.+.+|. .+. .+++|++|++++|.+++..|..++.+++|++|+++.|.+. .+|..++
T Consensus 119 ----~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~ 192 (549)
T 2z81_A 119 ----FPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFA 192 (549)
T ss_dssp ----CTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHH
T ss_pred ----hhccCCccEEECCCCccccccCHhhhh-cccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhH
Confidence 23455566666666664455553 444 4888889999999888888888888889999999988886 7777777
Q ss_pred hCCCCCCEEEccCcccCCcC---cccccCCCCCCeEEccCcccCccccc----cccCCCCCCEEEccCCccCCCc-----
Q 041908 419 TGCVSLAFMNVSHNYFGGQI---FPKYMSMTQLAWLYLNDNQFTGRLEE----GLLNAPSLHILDVSNNMLSGQL----- 486 (883)
Q Consensus 419 ~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~ls~n~l~~~~----- 486 (883)
..+++|++|++++|++++.. ......+++|+.|++++|.+++..+. .+..+++|+.+++++|.+.+..
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 272 (549)
T 2z81_A 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272 (549)
T ss_dssp HSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC
T ss_pred hhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccccc
Confidence 78889999999999888752 12234577899999999988765443 3456788999999999876531
Q ss_pred -chhhhCCCCCCEEECCCCcCCCC-----CCccccCCCcccEEecCCCcCcCcccccc-ccCCCcCeeecccCccccccc
Q 041908 487 -PHWVGNFSNLDVLLMSRNSLEGD-----VSVPLSNLQVARILDISENKLYGPLEFSF-NHSSSLWHLFLHNNSLNGSIP 559 (883)
Q Consensus 487 -p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p 559 (883)
...+..+.+|+.|++.++.+... ++..+....+|+.|++++|++. .+|..+ ..+++|++|++++|++++.+|
T Consensus 273 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~ 351 (549)
T 2z81_A 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYL 351 (549)
T ss_dssp TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHH
T ss_pred chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccc
Confidence 12345678889999888876532 2222334567899999999886 455544 578899999999999988775
Q ss_pred hh---hhcCCCCCEEeccCCcCCccCC--ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccc
Q 041908 560 SA---LFQSSQLMTLDLRDNEFSGNIP--PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF 634 (883)
Q Consensus 560 ~~---~~~~~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 634 (883)
.. +..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ +|.+
T Consensus 352 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~- 428 (549)
T 2z81_A 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC- 428 (549)
T ss_dssp HHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT-
T ss_pred cchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch-
Confidence 43 6778899999999999986432 45788899999999999998 688888889999999999998763 2221
Q ss_pred ccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEc
Q 041908 635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDL 714 (883)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 714 (883)
..++|+.|||
T Consensus 429 ----------------------------------------------------------------------~~~~L~~L~L 438 (549)
T 2z81_A 429 ----------------------------------------------------------------------IPQTLEVLDV 438 (549)
T ss_dssp ----------------------------------------------------------------------SCTTCSEEEC
T ss_pred ----------------------------------------------------------------------hcCCceEEEC
Confidence 1246889999
Q ss_pred cCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCccc
Q 041908 715 SSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGP 794 (883)
Q Consensus 715 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ 794 (883)
++|++++.+ +.+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..+..+++|+.|++++|+++|.
T Consensus 439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 439 SNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 999999754 57899999999999999 6776 57899999999999999999999999999999999999999999
Q ss_pred CCCCccC
Q 041908 795 TPNTKQF 801 (883)
Q Consensus 795 ip~~~~~ 801 (883)
+|....+
T Consensus 513 ~~~~~~l 519 (549)
T 2z81_A 513 CPRIDYL 519 (549)
T ss_dssp HHHHHHH
T ss_pred CccHHHH
Confidence 9854433
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-45 Score=437.89 Aligned_cols=518 Identities=21% Similarity=0.177 Sum_probs=326.7
Q ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccc
Q 041908 89 QLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKC 168 (883)
Q Consensus 89 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~ 168 (883)
++++|||++|.|++..+..|.++++|++|+|++|++++ +|..+|.++++|++|+|++|++.+..+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~~l~~------------- 117 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLAL------------- 117 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCCEECG-------------
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCCCCCH-------------
Confidence 56666666666655555556666666666666666554 444455556666666666555543332
Q ss_pred cchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccChH
Q 041908 169 REMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSLS 247 (883)
Q Consensus 169 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~ 247 (883)
..|.++++|++|+|++|++++..+..|+++++|++|++++|.+++ .+| ..++.+++|++|++++|++++.
T Consensus 118 ----~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~N~l~~~---- 188 (635)
T 4g8a_A 118 ----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQSI---- 188 (635)
T ss_dssp ----GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCSSCCCEE----
T ss_pred ----HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccCcccccc----
Confidence 345555555555555555554444455555555555555555542 233 4445555555555555555421
Q ss_pred hhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCC----CCCEEEccCCCCcCCcchHHHhc
Q 041908 248 VLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQY----DLRYIDLSHNNLAGTFPTWLLQN 323 (883)
Q Consensus 248 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~----~L~~L~Ls~n~l~~~~p~~~~~~ 323 (883)
.+..+..+. ....++++.|.+. .++...+
T Consensus 189 --------------------------------------------~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-- 221 (635)
T 4g8a_A 189 --------------------------------------------YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-- 221 (635)
T ss_dssp --------------------------------------------CGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTT--
T ss_pred --------------------------------------------ccccccchhhhhhhhhhhhcccCccc-ccCcccc--
Confidence 122222111 2345666666665 3333222
Q ss_pred CCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcC------CCCCCccccccC
Q 041908 324 NTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF------EGSIPPSMGYTV 397 (883)
Q Consensus 324 l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l------~~~~p~~l~~l~ 397 (883)
....++.+++.+|.....++......+..++...+..+.. .......+....
T Consensus 222 ----------------------~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 222 ----------------------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp ----------------------TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred ----------------------cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 2223344555555444333333333355555554433222 112222333344
Q ss_pred cccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEc
Q 041908 398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477 (883)
Q Consensus 398 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 477 (883)
.+...++..+...... ......+..+.+++.+.+.++.+....+ +.....|+.|++
T Consensus 280 ~l~~~~l~~~~~~~~~----------------------~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l 335 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYL----------------------DGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLEL 335 (635)
T ss_dssp GSEEEEEEEECCCSCE----------------------EECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEE
T ss_pred chhhhhhhhhhhcccc----------------------cchhhhhhhhcccccccccccccccccc--cccchhhhhhhc
Confidence 4444444333221110 0112223344556666666665553322 344566777777
Q ss_pred cCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC--ccccccccCCCcCeeecccCccc
Q 041908 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG--PLEFSFNHSSSLWHLFLHNNSLN 555 (883)
Q Consensus 478 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~ 555 (883)
.+|.+.+..+ ..+..|+.+++..|..... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..|...
T Consensus 336 ~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~ 410 (635)
T 4g8a_A 336 VNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI 410 (635)
T ss_dssp ESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE
T ss_pred ccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc
Confidence 7777664332 2356677777777765542 234467778888888877653 33445566778888888888876
Q ss_pred cccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC-CCCcc
Q 041908 556 GSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG-SIPSC 633 (883)
Q Consensus 556 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~-~~p~~ 633 (883)
+ ++..+..+++|+.++++.|+.....+ ..+..+++++.++++.|++.+..|..+..++.|+.|++++|++.. .+|..
T Consensus 411 ~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~ 489 (635)
T 4g8a_A 411 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 489 (635)
T ss_dssp E-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred c-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh
Confidence 3 45567788889999998888776554 457788999999999999998888889999999999999997543 23333
Q ss_pred cccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEE
Q 041908 634 FTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLD 713 (883)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 713 (883)
+. .+++|+.||
T Consensus 490 ~~---------------------------------------------------------------------~l~~L~~L~ 500 (635)
T 4g8a_A 490 FT---------------------------------------------------------------------ELRNLTFLD 500 (635)
T ss_dssp CT---------------------------------------------------------------------TCTTCCEEE
T ss_pred hh---------------------------------------------------------------------hccccCEEE
Confidence 32 257889999
Q ss_pred ccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCC-CCCcEEEccCCcCc
Q 041908 714 LSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSEL-NYLAIFNVSYNDLS 792 (883)
Q Consensus 714 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l-~~L~~l~ls~N~l~ 792 (883)
|++|+|++.+|..|+++++|++|+|++|+|++.+|..|+++++|++|||++|+|++.+|..+..+ ++|++|++++|+++
T Consensus 501 Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999998 68999999999999
Q ss_pred ccCCCC
Q 041908 793 GPTPNT 798 (883)
Q Consensus 793 g~ip~~ 798 (883)
|.+...
T Consensus 581 C~C~~~ 586 (635)
T 4g8a_A 581 CTCEHQ 586 (635)
T ss_dssp CSGGGH
T ss_pred ccCCcH
Confidence 987643
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-47 Score=452.29 Aligned_cols=457 Identities=16% Similarity=0.186 Sum_probs=283.4
Q ss_pred cceEEEcccCcCCccCchhhhcCCCCCEEEccCCCC------cC------CcchHHHhcCCCCcEEEcccccccccccCC
Q 041908 277 QLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNL------AG------TFPTWLLQNNTKLEFLFLFNNFLKGLLHLP 344 (883)
Q Consensus 277 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l------~~------~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~ 344 (883)
+++.|+|+++.+.|.+|..++.+++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+.+...
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGGG
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchhh
Confidence 678889999999999999999999999999999976 33 455543 23344 555555444332110
Q ss_pred C--CCCCccEEEccCCccccccchhhhcCCCCCcEEeCC--CCcCCCCCCccccccCcccEEeccCCcccCc--------
Q 041908 345 D--SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMS--QNSFEGSIPPSMGYTVRLLFLDLSSNNFSGE-------- 412 (883)
Q Consensus 345 ~--~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~--~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-------- 412 (883)
. .+..+..+++....+.. .....++.+.+. .|++++ +|..++++++|++|++++|.++|.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 0 00111111111100000 001122222222 455665 666666666666666666666653
Q ss_pred ---------cchhHh-hCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcc-cCc-cccccccCC------CCCCE
Q 041908 413 ---------LPKQFL-TGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQ-FTG-RLEEGLLNA------PSLHI 474 (883)
Q Consensus 413 ---------ip~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~ 474 (883)
+|..+. ..+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 665541 156677777777777766677667777777777777776 666 666666554 67777
Q ss_pred EEccCCccCCCcch--hhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCC-cCeeeccc
Q 041908 475 LDVSNNMLSGQLPH--WVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSS-LWHLFLHN 551 (883)
Q Consensus 475 L~ls~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-L~~L~L~~ 551 (883)
|++++|.++ .+|. .++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 777777777 6666 67777777777777777776666 6777777777777777776 56666767766 77777777
Q ss_pred CccccccchhhhcCC--CCCEEeccCCcCCccCCcccc-------CCCCCcEEEccCCcccccCch-hhcCCCCCCEEEc
Q 041908 552 NSLNGSIPSALFQSS--QLMTLDLRDNEFSGNIPPLIN-------EDSNLRALLLRGNNLQGNIPQ-QLCHLRKIAIVDI 621 (883)
Q Consensus 552 n~l~~~~p~~~~~~~--~L~~L~Ls~N~l~~~~p~~l~-------~l~~L~~L~L~~N~l~g~~p~-~l~~l~~L~~L~l 621 (883)
|.++ .+|..+..++ +|++|++++|++++.+|..+. .+++|++|++++|+++ .+|. .+..+++|+.|++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEEC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEEC
Confidence 7776 6666665543 677777777777777777666 6667777777777777 3444 3445777777777
Q ss_pred CCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccc
Q 041908 622 SYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESY 701 (883)
Q Consensus 622 s~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (883)
++|+++ .+|........ +
T Consensus 465 s~N~l~-~i~~~~~~~~~----------------------~--------------------------------------- 482 (636)
T 4eco_A 465 MGNMLT-EIPKNSLKDEN----------------------E--------------------------------------- 482 (636)
T ss_dssp CSSCCS-BCCSSSSEETT----------------------E---------------------------------------
T ss_pred CCCCCC-CcCHHHhcccc----------------------c---------------------------------------
Confidence 777776 55543211000 0
Q ss_pred cccccccccEEEccCCcCcccCccccc--ccccCCeeeCCCCcCCcCCCccccCcCCCCEEEC------CCCcccccCCc
Q 041908 702 KGGVLEYMTGLDLSSNELTGEIPSAIG--YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDL------SYNKLRGQIPL 773 (883)
Q Consensus 702 ~~~~l~~L~~LdLs~N~l~g~ip~~l~--~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdL------s~N~Lsg~ip~ 773 (883)
....+++|+.|||++|+++ .+|..+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 0011345666777777776 5666665 66777777777777765 6666667777777766 44666666777
Q ss_pred cccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcCCC
Q 041908 774 ELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLNLC 816 (883)
Q Consensus 774 ~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc 816 (883)
.+.++++|+.|++++|++ +.||.... ..+....+.+|+..|
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred HHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 776677777777777777 55665421 334444455665555
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.2e-46 Score=431.37 Aligned_cols=439 Identities=19% Similarity=0.200 Sum_probs=369.4
Q ss_pred ccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEc
Q 041908 276 FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI 355 (883)
Q Consensus 276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 355 (883)
.+|++|++++|.+.+..|..+..+++|++|++++|++++..|..+ .++++|++|++++|.++.++.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence 578888888888888888899999999999999999986556655 4899999999999999987655 7899999999
Q ss_pred cCCcccc-ccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcc--cEEeccCCcc--cCccchhHhhCCC-CCCEEEc
Q 041908 356 SNNNFIG-MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL--LFLDLSSNNF--SGELPKQFLTGCV-SLAFMNV 429 (883)
Q Consensus 356 s~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~ip~~~~~~l~-~L~~L~L 429 (883)
++|.+.+ .+|..++. +++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+ ..+. ....+++
T Consensus 98 ~~N~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l 172 (520)
T 2z7x_B 98 SFNAFDALPICKEFGN-MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVF 172 (520)
T ss_dssp CSSCCSSCCCCGGGGG-CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEEC
T ss_pred cCCccccccchhhhcc-CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc-cccccceEEEEe
Confidence 9999987 57888876 9999999999999986 457778888 9999999999 76777654 2333 3446788
Q ss_pred cCcccCCcCcc-cccCCCCCCeEEccCcc-------cCccccccccCCCCCCEEEccCCccCCCcchhhh---CCCCCCE
Q 041908 430 SHNYFGGQIFP-KYMSMTQLAWLYLNDNQ-------FTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVG---NFSNLDV 498 (883)
Q Consensus 430 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~ 498 (883)
++|.+.+.++. .+..+++|+.+++++|. +.+.+| .+..+++|+.|++++|.+++..+..+. ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 88988776554 56789999999999997 777776 788899999999999998764333222 2569999
Q ss_pred EECCCCcCCCCCCccc-----cCCCcccEEecCCCcCcCccc-cccccC---CCcCeeecccCccccccchhhhcCCCCC
Q 041908 499 LLMSRNSLEGDVSVPL-----SNLQVARILDISENKLYGPLE-FSFNHS---SSLWHLFLHNNSLNGSIPSALFQSSQLM 569 (883)
Q Consensus 499 L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~~---~~L~~L~L~~n~l~~~~p~~~~~~~~L~ 569 (883)
|++++|+++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|+
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~ 327 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFL 327 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCC
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCccc
Confidence 9999999999999988 8999999999999998 445 344333 57999999999987432 126789999
Q ss_pred EEeccCCcCCccCCccccCCCCCcEEEccCCcccc--cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908 570 TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647 (883)
Q Consensus 570 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 647 (883)
+|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|+.||+++|++++.+|....
T Consensus 328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~------------ 395 (520)
T 2z7x_B 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC------------ 395 (520)
T ss_dssp EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC------------
T ss_pred EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh------------
Confidence 99999999999999999999999999999999997 6778899999999999999999876664310
Q ss_pred CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI 727 (883)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 727 (883)
..+++|+.|+|++|++++.+|..+
T Consensus 396 --------------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 396 --------------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp --------------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSC
T ss_pred --------------------------------------------------------ccCccCCEEECcCCCCCcchhhhh
Confidence 115678999999999999998877
Q ss_pred cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc-ccCCCCCcEEEccCCcCcccCCCCc
Q 041908 728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNTK 799 (883)
Q Consensus 728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~-l~~l~~L~~l~ls~N~l~g~ip~~~ 799 (883)
. ++|++|+|++|+++ .+|..+..+++|++|||++|++++ +|.. +..+++|+.|++++|+++|.++..+
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchH
Confidence 5 79999999999999 889888899999999999999994 6665 8999999999999999999887543
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=429.17 Aligned_cols=459 Identities=19% Similarity=0.176 Sum_probs=278.8
Q ss_pred CEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccc
Q 041908 91 KILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCRE 170 (883)
Q Consensus 91 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~ 170 (883)
++||+++|++.. +|..+. ++|++|+|++|.+.+ ++...+.++++|++|+|++|++.+..|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------------- 62 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQYLDI--------------- 62 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCCEEEG---------------
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccc--cChhhccccccccEEecCCCccCCcCh---------------
Confidence 467788777774 555554 677777777777766 443567777777777777777766555
Q ss_pred hhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccChHhh
Q 041908 171 MNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSLSVL 249 (883)
Q Consensus 171 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l 249 (883)
..+.++++|++|+|++|+++ .+|.. .+++|++|++++|++++ .+| ..|+++++|++|++++|.+++ ..+
T Consensus 63 --~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~----~~~ 132 (520)
T 2z7x_B 63 --SVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPIC-KEFGNMSQLKFLGLSTTHLEK----SSV 132 (520)
T ss_dssp --GGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCC-GGGGGCTTCCEEEEEESSCCG----GGG
T ss_pred --HHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccch-hhhccCCcceEEEecCcccch----hhc
Confidence 66777777777777777777 45554 67777777777777774 355 567777777777777777764 234
Q ss_pred hcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcC--CccCchhhhcCC-CCCEEEccCCCCcCCcchHHHhcCCC
Q 041908 250 ANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI--SGTIPSFLQYQY-DLRYIDLSHNNLAGTFPTWLLQNNTK 326 (883)
Q Consensus 250 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~~l~~ 326 (883)
..+++| +|++|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+.++++
T Consensus 133 ~~l~~L---------------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~ 191 (520)
T 2z7x_B 133 LPIAHL---------------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191 (520)
T ss_dssp GGGTTS---------------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSE
T ss_pred cccccc---------------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccc
Confidence 444444 125555555555 455555554443 23345666676666666655556677
Q ss_pred CcEEEccccc-------ccccccCCCCCCCccEEEccCCccccccchhhhc--CCCCCcEEeCCCCcCCCCCCccc----
Q 041908 327 LEFLFLFNNF-------LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGM--ILPELVYLDMSQNSFEGSIPPSM---- 393 (883)
Q Consensus 327 L~~L~L~~n~-------l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~~p~~l---- 393 (883)
|+.|++++|. +.+..+....+++|++|++++|.+.+..+..+.. ..++|++|++++|+++|.+|..+
T Consensus 192 L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 7777776665 3332222335566777777777666543333211 14578888888888887888777
Q ss_pred -cccCcccEEeccCCcccCccchhHhhCC---CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCC
Q 041908 394 -GYTVRLLFLDLSSNNFSGELPKQFLTGC---VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA 469 (883)
Q Consensus 394 -~~l~~L~~L~Ls~n~l~~~ip~~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 469 (883)
+.+++|+.+++++|.+ .+|...+..+ .+|+.|++++|.+..... ...+++|++|++++|++++.+|..+..+
T Consensus 272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 347 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHL 347 (520)
T ss_dssp SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCC
T ss_pred cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccC
Confidence 7788888888888887 5663222222 456777776666544321 1345555555555555555555555555
Q ss_pred CCCCEEEccCCccCC--CcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCee
Q 041908 470 PSLHILDVSNNMLSG--QLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHL 547 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 547 (883)
++|++|++++|.+++ .+|..++.+++|++|++++|++++.+|.. .+..+++|++|
T Consensus 348 ~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-----------------------~~~~l~~L~~L 404 (520)
T 2z7x_B 348 TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-----------------------DCSWTKSLLSL 404 (520)
T ss_dssp SSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-----------------------SCCCCTTCCEE
T ss_pred CCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-----------------------hhccCccCCEE
Confidence 555555555555553 33444555555555555555555433322 23444555555
Q ss_pred ecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchh-hcCCCCCCEEEcCCCcC
Q 041908 548 FLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ-LCHLRKIAIVDISYNLL 626 (883)
Q Consensus 548 ~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~-l~~l~~L~~L~ls~N~l 626 (883)
++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++
T Consensus 405 ~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 405 NMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp ECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence 5555555544444332 45666666666666 55655556666666666666666 34443 66667777777777777
Q ss_pred CCCCC
Q 041908 627 DGSIP 631 (883)
Q Consensus 627 ~~~~p 631 (883)
++..+
T Consensus 481 ~c~c~ 485 (520)
T 2z7x_B 481 DCSCP 485 (520)
T ss_dssp CCCHH
T ss_pred cccCC
Confidence 66544
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.9e-45 Score=437.35 Aligned_cols=439 Identities=18% Similarity=0.230 Sum_probs=349.5
Q ss_pred ccceEEEcccCcCCccCchhhhcCCCCCEEEc-cCCCCcCCcchHHHhcCCCCc-----EEEc----------ccccccc
Q 041908 276 FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDL-SHNNLAGTFPTWLLQNNTKLE-----FLFL----------FNNFLKG 339 (883)
Q Consensus 276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~p~~~~~~l~~L~-----~L~L----------~~n~l~~ 339 (883)
..++.|+|+++.+.|.+|+.++.+++|++|+| ++|.++|..|.........+. .+.. ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46889999999999999999999999999999 888887764422100000000 0000 0000000
Q ss_pred --------cc---cC-CCCCCCccEEEccC--CccccccchhhhcCCCCCcEEeCCCCcCCC-----------------C
Q 041908 340 --------LL---HL-PDSKRDLLHLVISN--NNFIGMLPDNFGMILPELVYLDMSQNSFEG-----------------S 388 (883)
Q Consensus 340 --------~~---~~-~~~~~~L~~L~ls~--n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-----------------~ 388 (883)
.+ .+ ......++.+.+.. |.+.+ +|..++. +++|++|+|++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhc-CCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 00 01223344444443 78888 8988876 8999999999999998 3
Q ss_pred CCcccc--ccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcc-cCC-cCcccccCCC-------CCCeEEccCcc
Q 041908 389 IPPSMG--YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY-FGG-QIFPKYMSMT-------QLAWLYLNDNQ 457 (883)
Q Consensus 389 ~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~ 457 (883)
+|..++ .+++|++|++++|.+.+.+|..+ ..+++|+.|++++|+ +++ .+|..+..++ +|++|++++|+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 888877 99999999999999999999765 689999999999998 888 7887666655 99999999999
Q ss_pred cCccccc--cccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCc-ccEEecCCCcCcCcc
Q 041908 458 FTGRLEE--GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQV-ARILDISENKLYGPL 534 (883)
Q Consensus 458 l~~~~~~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~ 534 (883)
++ .+|. .+..+++|+.|++++|.++ .+| .++.+++|++|++++|+++ .+|..+..+++ |+.|++++|++. .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 99 7888 8999999999999999998 888 8999999999999999999 88888999999 999999999998 67
Q ss_pred ccccccCCC--cCeeecccCccccccchh---hh--cCCCCCEEeccCCcCCccCCccc-cCCCCCcEEEccCCcccccC
Q 041908 535 EFSFNHSSS--LWHLFLHNNSLNGSIPSA---LF--QSSQLMTLDLRDNEFSGNIPPLI-NEDSNLRALLLRGNNLQGNI 606 (883)
Q Consensus 535 ~~~~~~~~~--L~~L~L~~n~l~~~~p~~---~~--~~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~~ 606 (883)
|..+..++. |+.|++++|++++.+|.. +. .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 777766644 999999999999876632 22 3458999999999999 566654 58899999999999999 77
Q ss_pred chhhcCC--------CCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccC
Q 041908 607 PQQLCHL--------RKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSG 678 (883)
Q Consensus 607 p~~l~~l--------~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 678 (883)
|..+... ++|+.|+|++|+++ .+|..+..
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------ 749 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------ 749 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence 7765443 38999999999998 66654420
Q ss_pred CChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCC------CcCCcCCCcccc
Q 041908 679 EDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSH------NHLSGSIPRSFS 752 (883)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~------N~l~g~ip~~l~ 752 (883)
..+++|+.|||++|+|++ +|..++.+++|+.|+|++ |++.+.+|..++
T Consensus 750 -------------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 750 -------------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp -------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred -------------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 115788999999999997 899999999999999977 889999999999
Q ss_pred CcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCC
Q 041908 753 NLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTP 796 (883)
Q Consensus 753 ~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip 796 (883)
++++|+.|||++|++ +.+|..+. ++|+.||+++|++...-+
T Consensus 804 ~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 804 TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 999999999999999 79999876 599999999999876444
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.9e-43 Score=416.62 Aligned_cols=495 Identities=20% Similarity=0.168 Sum_probs=378.0
Q ss_pred CCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCcccccccc
Q 041908 81 YNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEK 160 (883)
Q Consensus 81 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 160 (883)
+.++.++++|++|||++|.+.+..+.+|.++++|++|+|++|++++ +|...|.++++|++|+|++|++++..+
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~Ls~N~l~~l~~----- 141 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLEN----- 141 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEECTTSCCCCSTT-----
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEECCCCcCCCCCh-----
Confidence 3468899999999999999999888899999999999999999987 776789999999999999999987654
Q ss_pred chhhcccccchhhhhcCCCCCCEEEccCCcCCC-CCCccccCCCCCCEEEccCCccccccChhhhcCCCCC----CEEec
Q 041908 161 LELLNNKCREMNARICELKNLVELNLSWNKLDG-SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSL----EYLSL 235 (883)
Q Consensus 161 L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L----~~L~L 235 (883)
..++++++|++|+|++|.+++ .+|..++.+++|++|++++|++++ ++...+..+.++ ..+++
T Consensus 142 ------------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 142 ------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp ------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCEEEC
T ss_pred ------------hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhhhhc
Confidence 568999999999999999976 468889999999999999999994 443666655443 36777
Q ss_pred cCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCcc-CchhhhcCCCCCEEEccCCCCcC
Q 041908 236 SGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGT-IPSFLQYQYDLRYIDLSHNNLAG 314 (883)
Q Consensus 236 ~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~ 314 (883)
+.|.++. ++... .....++.+++.+|..... .+..+..+..++...+..+...+
T Consensus 209 s~n~l~~-i~~~~------------------------~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 209 SLNPMNF-IQPGA------------------------FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp TTCCCCE-ECTTT------------------------TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred ccCcccc-cCccc------------------------ccchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 7777663 33222 2222344555555544322 23345556666655554322111
Q ss_pred -----CcchHHHhcCCCCcEEEcccccccc----cccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcC
Q 041908 315 -----TFPTWLLQNNTKLEFLFLFNNFLKG----LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385 (883)
Q Consensus 315 -----~~p~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 385 (883)
......+.....+....+..+.... .........+++.+.+.++.+....+.. ....++.|++.+|.+
T Consensus 264 ~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 264 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNCKF 340 (635)
T ss_dssp SCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG---SCCCCSEEEEESCEE
T ss_pred ccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc---cchhhhhhhcccccc
Confidence 1111112234445555544433221 1122235667788888888776543322 267888999988888
Q ss_pred CCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCC--cCcccccCCCCCCeEEccCcccCcccc
Q 041908 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGG--QIFPKYMSMTQLAWLYLNDNQFTGRLE 463 (883)
Q Consensus 386 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~ 463 (883)
.+..+ ..+..|+.+++..|.+....+ ...+++|+.+++++|.+.. ..+..+..+.+|+.+++..|.... .+
T Consensus 341 ~~~~~---~~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~ 413 (635)
T 4g8a_A 341 GQFPT---LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MS 413 (635)
T ss_dssp SSCCC---CBCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-EC
T ss_pred cCcCc---ccchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cc
Confidence 74433 345678888888887763332 2468889999999988754 345556678899999999998874 45
Q ss_pred ccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCc-CccccccccC
Q 041908 464 EGLLNAPSLHILDVSNNMLSGQLP-HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY-GPLEFSFNHS 541 (883)
Q Consensus 464 ~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~ 541 (883)
..+..+++|+.++++.+......+ ..+..+.+++.++++.|.+.+..+..+..++.|+.|++++|.+. +..|..|..+
T Consensus 414 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l 493 (635)
T 4g8a_A 414 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493 (635)
T ss_dssp SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc
Confidence 567788999999999888765443 45788999999999999999999999999999999999999754 4577889999
Q ss_pred CCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCC-CCCCEEE
Q 041908 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL-RKIAIVD 620 (883)
Q Consensus 542 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l-~~L~~L~ 620 (883)
++|++|+|++|++++..|..|.++++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+ ++|+.|+
T Consensus 494 ~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence 999999999999999889999999999999999999999888999999999999999999999999999988 6899999
Q ss_pred cCCCcCCCCC
Q 041908 621 ISYNLLDGSI 630 (883)
Q Consensus 621 ls~N~l~~~~ 630 (883)
+++|++....
T Consensus 574 L~~Np~~C~C 583 (635)
T 4g8a_A 574 LTQNDFACTC 583 (635)
T ss_dssp CTTCCBCCSG
T ss_pred eeCCCCcccC
Confidence 9999998653
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.8e-43 Score=409.83 Aligned_cols=456 Identities=21% Similarity=0.233 Sum_probs=272.1
Q ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhccccc
Q 041908 90 LKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCR 169 (883)
Q Consensus 90 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~ 169 (883)
.+++|++++++.+ +|..+. ++|++|+|++|.+.+ +|...|.++++|++|+|++|.+.+..|
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------- 93 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISE--LRMPDISFLSELRVLRLSHNRIRSLDF-------------- 93 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCC--CCGGGTTTCTTCCEEECCSCCCCEECT--------------
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccc--cChhhhccCCCccEEECCCCCCCcCCH--------------
Confidence 4789999988886 565554 788888888888876 554678888888888888888876655
Q ss_pred chhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc-ccChhhhcCCCCCCEEeccCCcCccccChHh
Q 041908 170 EMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG-NLPISVFANLTSLEYLSLSGNNFQGSFSLSV 248 (883)
Q Consensus 170 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~ 248 (883)
..+.++++|++|+|++|+++ .+|.. .+++|++|++++|++++ .+| ..|+++++|++|++++|++++ . .
T Consensus 94 ---~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p-~~~~~l~~L~~L~L~~n~l~~-~---~ 162 (562)
T 3a79_B 94 ---HVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVC-KEFGNLTKLTFLGLSAAKFRQ-L---D 162 (562)
T ss_dssp ---TTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCC-GGGGGCTTCCEEEEECSBCCT-T---T
T ss_pred ---HHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCch-HhhcccCcccEEecCCCcccc-C---c
Confidence 66778888888888888887 56655 78888888888888874 234 578888888888888887764 1 2
Q ss_pred hhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcC--CccCchhhhcCC--CCCEEEccCCCCcCCcchHHHhcC
Q 041908 249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNI--SGTIPSFLQYQY--DLRYIDLSHNNLAGTFPTWLLQNN 324 (883)
Q Consensus 249 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~p~~~~~~l 324 (883)
+..+++| +|++|++++|.+ ++..|..+..+. .+ .+++++|.+.+.++...+..+
T Consensus 163 ~~~l~~L---------------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l 220 (562)
T 3a79_B 163 LLPVAHL---------------------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNAL 220 (562)
T ss_dssp TGGGTTS---------------------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSE
T ss_pred hhhhhhc---------------------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhccccc
Confidence 3333433 224445555555 444454444433 22 445566666655555544455
Q ss_pred CCCcEEEcccccc-----cccccCCCCCCCccEEEccCCcccccc----chhhhcCCCCCcEEeCCCCcCCCCCCccc--
Q 041908 325 TKLEFLFLFNNFL-----KGLLHLPDSKRDLLHLVISNNNFIGML----PDNFGMILPELVYLDMSQNSFEGSIPPSM-- 393 (883)
Q Consensus 325 ~~L~~L~L~~n~l-----~~~~~~~~~~~~L~~L~ls~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-- 393 (883)
++|+.+++++|.. .+.......+++|+.++++++.+.+.. +.... .++|++|++++|.++|.+|..+
T Consensus 221 ~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~ 298 (562)
T 3a79_B 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVEYLNIYNLTITERIDREEFT 298 (562)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT--TSSEEEEEEEEEEECSCCCCCCCC
T ss_pred ceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh--cccccEEEEeccEeeccccchhhh
Confidence 6666666666531 111111123455555555555544322 22221 3577888888887777777766
Q ss_pred ---cccCcccEEeccCCcccCccchhHhhC---CCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCcccccccc
Q 041908 394 ---GYTVRLLFLDLSSNNFSGELPKQFLTG---CVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL 467 (883)
Q Consensus 394 ---~~l~~L~~L~Ls~n~l~~~ip~~~~~~---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 467 (883)
..++.|+.++++.+.+ .+|...+.. ..+|++|++++|.+..... ...+
T Consensus 299 ~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l---------------------- 352 (562)
T 3a79_B 299 YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSP---------------------- 352 (562)
T ss_dssp CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSC----------------------
T ss_pred cccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCC----------------------
Confidence 5666666666666665 455332211 1445555555555432211 1234
Q ss_pred CCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCC--CCccccCCCcccEEecCCCcCcCcccc-ccccCCCc
Q 041908 468 NAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGD--VSVPLSNLQVARILDISENKLYGPLEF-SFNHSSSL 544 (883)
Q Consensus 468 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L 544 (883)
++|++|++++|.+++.+|..++++++|++|++++|++++. +|..+.++++|++|++++|++++.+|. .+..+++|
T Consensus 353 --~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 353 --SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp --CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred --CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 4455555555555444444455555555555555555442 123345555555555555555543332 34555566
Q ss_pred CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchh-hcCCCCCCEEEcCC
Q 041908 545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQ-LCHLRKIAIVDISY 623 (883)
Q Consensus 545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~-l~~l~~L~~L~ls~ 623 (883)
++|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCS
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecC
Confidence 6666666666555444332 46667777777666 46665556677777777777776 45544 66777777777777
Q ss_pred CcCCCCCC
Q 041908 624 NLLDGSIP 631 (883)
Q Consensus 624 N~l~~~~p 631 (883)
|++.+..|
T Consensus 507 N~~~c~c~ 514 (562)
T 3a79_B 507 NPWDCTCP 514 (562)
T ss_dssp CCBCCCHH
T ss_pred CCcCCCcc
Confidence 77766554
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-42 Score=404.26 Aligned_cols=439 Identities=18% Similarity=0.213 Sum_probs=341.0
Q ss_pred ccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEc
Q 041908 276 FQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVI 355 (883)
Q Consensus 276 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~l 355 (883)
.++++|++++|.+++..|..+..+++|++|++++|++++..|..+ .++++|++|++++|.++.++.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF-LFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT-TTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh-CCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 467777777777777777788888888888888888875445444 4788888888888888766544 6788888888
Q ss_pred cCCcccc-ccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcc--cEEeccCCcc--cCccchhHhhCCC-CCCEEEc
Q 041908 356 SNNNFIG-MLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRL--LFLDLSSNNF--SGELPKQFLTGCV-SLAFMNV 429 (883)
Q Consensus 356 s~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~l--~~~ip~~~~~~l~-~L~~L~L 429 (883)
++|.+.+ .+|..+.. +++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+ ..+. ..-.+++
T Consensus 129 s~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l-~~l~~~~l~l~l 203 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGN-LTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL-QIPNTTVLHLVF 203 (562)
T ss_dssp CSSCCSBCCCCGGGGG-CTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE-EECCEEEEEEEE
T ss_pred CCCCccccCchHhhcc-cCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc-cccCcceEEEEe
Confidence 8888876 44667765 88899999998888753 34555555 8899998888 66666543 2222 1225677
Q ss_pred cCcccCCcCcc-cccCCCCCCeEEccCcc-----cCccccccccCCCCCCEEEccCCccCCC----cchhhhCCCCCCEE
Q 041908 430 SHNYFGGQIFP-KYMSMTQLAWLYLNDNQ-----FTGRLEEGLLNAPSLHILDVSNNMLSGQ----LPHWVGNFSNLDVL 499 (883)
Q Consensus 430 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L 499 (883)
+.|.+.+.++. .+..+++|+.+++++|+ +.+. ...+..++.|+.|+++++.+.+. ++..+ ..++|++|
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L 281 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYL 281 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEE
Confidence 88887775543 45678889999999885 2222 23567788899999988877653 22222 24589999
Q ss_pred ECCCCcCCCCCCccc-----cCCCcccEEecCCCcCcCccc-cccc---cCCCcCeeecccCccccccchhhhcCCCCCE
Q 041908 500 LMSRNSLEGDVSVPL-----SNLQVARILDISENKLYGPLE-FSFN---HSSSLWHLFLHNNSLNGSIPSALFQSSQLMT 570 (883)
Q Consensus 500 ~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~---~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 570 (883)
++++|.++|.+|..+ .+++.|+.++++.+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 357 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTF 357 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCE
T ss_pred EEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceE
Confidence 999999999899887 7788888888888877 334 2221 1257999999999986432 1267899999
Q ss_pred EeccCCcCCccCCccccCCCCCcEEEccCCcccc--cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCC
Q 041908 571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFN 648 (883)
Q Consensus 571 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 648 (883)
|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|....
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------------- 424 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------------- 424 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-------------
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-------------
Confidence 9999999999999999999999999999999997 4467799999999999999999886765321
Q ss_pred CcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc
Q 041908 649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG 728 (883)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 728 (883)
..+++|+.|+|++|++++.+|..+.
T Consensus 425 -------------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~ 449 (562)
T 3a79_B 425 -------------------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP 449 (562)
T ss_dssp -------------------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred -------------------------------------------------------cCcccCCEEECCCCCCCcchhhhhc
Confidence 1156789999999999999888765
Q ss_pred ccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc-ccCCCCCcEEEccCCcCcccCCCCcc
Q 041908 729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNTKQ 800 (883)
Q Consensus 729 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~-l~~l~~L~~l~ls~N~l~g~ip~~~~ 800 (883)
++|++|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|+.|++++|+++|.+|..+.
T Consensus 450 --~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 450 --PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp --TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred --CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 78999999999999 78888889999999999999999 46665 99999999999999999999886544
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-41 Score=386.63 Aligned_cols=376 Identities=19% Similarity=0.225 Sum_probs=314.9
Q ss_pred EEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccC
Q 041908 352 HLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSH 431 (883)
Q Consensus 352 ~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~ 431 (883)
.++.+++.+. .+|. + .++|++|++++|.+++..|..+..+++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 14 ~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp EEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3444444443 4454 2 467888888888888777888888888888888888887777777678888888888888
Q ss_pred cccCCcCcccccCCCCCCeEEccCcccCcccccc--ccCCCCCCEEEccCCccCCCcchh-hhCCCCCCEEECCCCcCCC
Q 041908 432 NYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEG--LLNAPSLHILDVSNNMLSGQLPHW-VGNFSNLDVLLMSRNSLEG 508 (883)
Q Consensus 432 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~ 508 (883)
|.+++..|..+..+++|++|++++|++++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|++++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 8888888888888999999999999988765554 888899999999999998877766 7889999999999999998
Q ss_pred CCCccccCC--CcccEEecCCCcCcCcccccc--------ccCCCcCeeecccCccccccchhhhcC---CCCCEEeccC
Q 041908 509 DVSVPLSNL--QVARILDISENKLYGPLEFSF--------NHSSSLWHLFLHNNSLNGSIPSALFQS---SQLMTLDLRD 575 (883)
Q Consensus 509 ~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~p~~~~~~---~~L~~L~Ls~ 575 (883)
..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|++++..|..+... ++|+.|++++
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 888888776 688999999999887655433 355789999999999998888887765 8899999999
Q ss_pred CcCCccC----------CccccC--CCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccC
Q 041908 576 NEFSGNI----------PPLINE--DSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEE 643 (883)
Q Consensus 576 N~l~~~~----------p~~l~~--l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~ 643 (883)
|.+.+.. +..+.. .++|++|++++|++++.+|..+..+++|+.|++++|++++..|..+..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------- 321 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------- 321 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-------
Confidence 8665432 222222 368999999999999999999999999999999999998776665532
Q ss_pred CCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccC
Q 041908 644 GDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEI 723 (883)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~i 723 (883)
+++|+.|||++|++++..
T Consensus 322 --------------------------------------------------------------l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 322 --------------------------------------------------------------LTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp --------------------------------------------------------------CTTCCEEECCSSCCCEEC
T ss_pred --------------------------------------------------------------cccCCEEECCCCccCCcC
Confidence 467899999999999888
Q ss_pred cccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccC
Q 041908 724 PSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQF 801 (883)
Q Consensus 724 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~ 801 (883)
|..++.+++|++|+|++|++++.+|..|+.+++|++|||++|++++..+..+..+++|+.|++++|+++|.+|....+
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred hhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999999999999999999999999999999999999999999877778899999999999999999999976544
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.4e-41 Score=378.63 Aligned_cols=423 Identities=22% Similarity=0.286 Sum_probs=220.1
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCc
Q 041908 177 ELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLE 256 (883)
Q Consensus 177 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~ 256 (883)
+.++|++|++++|.+ |.+|++++++++|++|++++|.++|.+| ..++++++|+.+++..|.. .+
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~l~l~~c~~------------~~-- 72 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAP-PGNGEQREMAVSRLRDCLD------------RQ-- 72 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSC-TTSCCCHHHHHHHHHHHHH------------HT--
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCC-cccccchhcchhhhhhhhc------------cC--
Confidence 357888888888888 6888888888888888888888888888 6777777776665554421 12
Q ss_pred EEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEccccc
Q 041908 257 VLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNF 336 (883)
Q Consensus 257 ~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 336 (883)
+++|++++|.+++ +|. ..++|++|++++|.+++ +|. ..++|++|++++|.
T Consensus 73 ---------------------l~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 73 ---------------------AHELELNNLGLSS-LPE---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNN 122 (454)
T ss_dssp ---------------------CSEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSC
T ss_pred ---------------------CCEEEecCCcccc-CCC---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCc
Confidence 3344444444443 122 12466666666666664 553 23455555555555
Q ss_pred ccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchh
Q 041908 337 LKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQ 416 (883)
Q Consensus 337 l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~ 416 (883)
+++++.. .++|++|++++|++++ +| .++.+++|++|++++|+++ .+|..
T Consensus 123 l~~l~~~----------------------------~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~ 171 (454)
T 1jl5_A 123 LKALSDL----------------------------PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL 171 (454)
T ss_dssp CSCCCSC----------------------------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC
T ss_pred cCcccCC----------------------------CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC
Confidence 5443211 1345555555555553 44 3555555555555555555 24432
Q ss_pred HhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCC
Q 041908 417 FLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNL 496 (883)
Q Consensus 417 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 496 (883)
..+|++|++++|++++ +| .+..+++|++|++++|++++ +|.. .++|++|++++|.+. .+|. ++.+++|
T Consensus 172 ----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L 239 (454)
T 1jl5_A 172 ----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFL 239 (454)
T ss_dssp ----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred ----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCC
Confidence 2356666666666655 23 45666666777777766664 3322 246777777777776 5563 6777777
Q ss_pred CEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCC
Q 041908 497 DVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDN 576 (883)
Q Consensus 497 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N 576 (883)
++|++++|++++ +|.. +++|+.|++++|++.+ +|.. +++|++|++++|++++ +|.. .++|+.|++++|
T Consensus 240 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N 307 (454)
T 1jl5_A 240 TTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSN 307 (454)
T ss_dssp CEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSS
T ss_pred CEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCC
Confidence 777777777775 3332 3677778888887766 3332 3678888888888875 2211 257888888888
Q ss_pred cCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccc
Q 041908 577 EFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTL 656 (883)
Q Consensus 577 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 656 (883)
++++ ++.. .++|++|++++|++++ +|.. +++|+.|++++|++++ +|. .
T Consensus 308 ~l~~-i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~-~---------------------- 355 (454)
T 1jl5_A 308 EIRS-LCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE-L---------------------- 355 (454)
T ss_dssp CCSE-ECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC-C----------------------
T ss_pred cCCc-ccCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc-h----------------------
Confidence 8885 2221 2578899999998886 6654 5788999999998873 443 0
Q ss_pred ccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcc--cCcccccccccCC
Q 041908 657 VVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTG--EIPSAIGYLQELH 734 (883)
Q Consensus 657 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~ 734 (883)
+++|+.||+++|++++ .+|.+++.+
T Consensus 356 -------------------------------------------------l~~L~~L~L~~N~l~~l~~ip~~l~~L---- 382 (454)
T 1jl5_A 356 -------------------------------------------------PQNLKQLHVEYNPLREFPDIPESVEDL---- 382 (454)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCSSCCCCCTTCCEE----
T ss_pred -------------------------------------------------hhhccEEECCCCCCCcCCCChHHHHhh----
Confidence 3567889999999998 788776543
Q ss_pred eeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc--cCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 735 ALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG--QIPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 735 ~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg--~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
+.|.+.|.+|.. +++|+.||+++|+++| .+|.+ ++.|.+++|.+.+++|..
T Consensus 383 ----~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 383 ----RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp ----ECCC----------------------------------------------------------
T ss_pred ----hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 457888888874 5789999999999998 77765 455678899999887754
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3e-40 Score=373.70 Aligned_cols=288 Identities=25% Similarity=0.253 Sum_probs=129.5
Q ss_pred CccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCC-------------cEEEcccccccccc
Q 041908 275 RFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKL-------------EFLFLFNNFLKGLL 341 (883)
Q Consensus 275 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L-------------~~L~L~~n~l~~~~ 341 (883)
...|++|++++|.+ +.+|..++++++|++|++++|.+.|.+|..+. ++++| ++|++++|.+++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 34678888888888 78888899999999999999998888888664 55555 55555555555543
Q ss_pred cCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCC
Q 041908 342 HLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGC 421 (883)
Q Consensus 342 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l 421 (883)
.. .++|++|++++|.+.+ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +|. +..+
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp~--~~~l 152 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LPE--LQNS 152 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CCC--CTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Ccc--cCCC
Confidence 32 2455555555555554 3321 3455555555555542 2211 1355555555555552 442 3445
Q ss_pred CCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEEC
Q 041908 422 VSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLM 501 (883)
Q Consensus 422 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 501 (883)
++|++|++++|++++ +|.. .++|++|++++|++++ +| .+..+++|++|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 555555555555543 2221 2345555555555544 23 34455555555555555543 2221 134555555
Q ss_pred CCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCcc
Q 041908 502 SRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGN 581 (883)
Q Consensus 502 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~ 581 (883)
++|.++ .+| .+..+++|++|++++|++++ +|. .+++|++|++++|++++ +|.. .++|+.|++++|++++.
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 555554 333 24455555555555555443 121 12344555555555443 3322 24455555555554431
Q ss_pred CCccccCCCCCcEEEccCCccc
Q 041908 582 IPPLINEDSNLRALLLRGNNLQ 603 (883)
Q Consensus 582 ~p~~l~~l~~L~~L~L~~N~l~ 603 (883)
|.. .++|++|++++|+++
T Consensus 293 -~~~---~~~L~~L~l~~N~l~ 310 (454)
T 1jl5_A 293 -SEL---PPNLYYLNASSNEIR 310 (454)
T ss_dssp -SCC---CTTCCEEECCSSCCS
T ss_pred -cCc---CCcCCEEECcCCcCC
Confidence 110 134445555555444
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.6e-39 Score=369.15 Aligned_cols=354 Identities=21% Similarity=0.237 Sum_probs=237.0
Q ss_pred CccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCC-CccccccCcccEEeccCCcccCccchhHhhCCCCCCEE
Q 041908 349 DLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSI-PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFM 427 (883)
Q Consensus 349 ~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 427 (883)
+|++|++++|.+.+..|..+.. +++|++|++++|.+.+.+ +..|..+++|++|++++|++++..|.. +.++++|++|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA-FNGLANLEVL 108 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSS-CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT-TTTCTTCCEE
T ss_pred ccCEEEecCCccCcCChhHhcc-CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh-ccCcccCCEE
Confidence 3444444444444444444432 455555555555544333 234455555555555555554332332 2445555555
Q ss_pred EccCcccCCcCccc--ccCCCCCCeEEccCcccCcccccc-ccCCCCCCEEEccCCccCCCcchhhhCC--CCCCEEECC
Q 041908 428 NVSHNYFGGQIFPK--YMSMTQLAWLYLNDNQFTGRLEEG-LLNAPSLHILDVSNNMLSGQLPHWVGNF--SNLDVLLMS 502 (883)
Q Consensus 428 ~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~ 502 (883)
++++|.+++..+.. +..+++|++|++++|++++..|.. +..+++|++|++++|.+++..|..+..+ .+|+.|+++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 55555555433332 555555666666666655554543 4555666666666666665555555544 456666666
Q ss_pred CCcCCCCCCcc--------ccCCCcccEEecCCCcCcCccccccccC---CCcCeeecccCccccc----------cchh
Q 041908 503 RNSLEGDVSVP--------LSNLQVARILDISENKLYGPLEFSFNHS---SSLWHLFLHNNSLNGS----------IPSA 561 (883)
Q Consensus 503 ~n~l~~~~~~~--------l~~l~~L~~L~Ls~n~l~~~~~~~~~~~---~~L~~L~L~~n~l~~~----------~p~~ 561 (883)
+|.+.+..+.. +..+++|+.|++++|++.+..|..+... ++|+.|++++|...+. .+..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 66665443332 2244566666666666666555544332 5666666666644322 1222
Q ss_pred hh--cCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccc
Q 041908 562 LF--QSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWP 639 (883)
Q Consensus 562 ~~--~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 639 (883)
+. ..++|+.|++++|++++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--- 345 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN--- 345 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT---
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC---
Confidence 22 2368999999999999999999999999999999999999988999999999999999999997665554432
Q ss_pred cccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcC
Q 041908 640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL 719 (883)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 719 (883)
+++|+.|||++|++
T Consensus 346 ------------------------------------------------------------------l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 346 ------------------------------------------------------------------LDKLEVLDLSYNHI 359 (455)
T ss_dssp ------------------------------------------------------------------CTTCCEEECCSSCC
T ss_pred ------------------------------------------------------------------cccCCEEECCCCcc
Confidence 56789999999999
Q ss_pred cccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCc
Q 041908 720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPL 773 (883)
Q Consensus 720 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~ 773 (883)
++.+|..|+.+++|++|+|++|++++..+..++.+++|+.|+|++|++++.+|.
T Consensus 360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999988888889999999999999999998873
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.2e-38 Score=358.36 Aligned_cols=347 Identities=18% Similarity=0.133 Sum_probs=276.3
Q ss_pred cEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccC
Q 041908 400 LFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSN 479 (883)
Q Consensus 400 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 479 (883)
+.++.+++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555555 555433 24666777777777666666777778888888888888877777888888888888888
Q ss_pred CccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccc
Q 041908 480 NMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIP 559 (883)
Q Consensus 480 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 559 (883)
|.+++..+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 88876655667888888888888888888778888888888888888888888878888888888999999888887666
Q ss_pred hhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccc
Q 041908 560 SALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWP 639 (883)
Q Consensus 560 ~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 639 (883)
..+.++++|+.|++++|++.+..+..+..+++|++|++++|++.+.+|.......+|+.|++++|++++..+..+.
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---- 245 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR---- 245 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT----
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc----
Confidence 7788889999999999999888778888889999999999888888888777777899999999988742222221
Q ss_pred cccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcC
Q 041908 640 WMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNEL 719 (883)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l 719 (883)
.+++|+.|||++|++
T Consensus 246 -----------------------------------------------------------------~l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 246 -----------------------------------------------------------------HLVYLRFLNLSYNPI 260 (477)
T ss_dssp -----------------------------------------------------------------TCTTCCEEECCSSCC
T ss_pred -----------------------------------------------------------------CccccCeeECCCCcC
Confidence 156788899999999
Q ss_pred cccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908 720 TGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK 799 (883)
Q Consensus 720 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~ 799 (883)
++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.|.++..+
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~ 340 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW 340 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH
T ss_pred CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh
Confidence 98888888999999999999999998889999999999999999999998777788888999999999999998877655
Q ss_pred cCCCCCCcccCCCcCCCCCC
Q 041908 800 QFANFDESNYRGNLNLCGPA 819 (883)
Q Consensus 800 ~~~~~~~~~~~gn~~lc~~~ 819 (883)
.+.+.....+.|+...|..|
T Consensus 341 ~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 341 VFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp HHTTTTSSCCTTCCCBEEES
T ss_pred HHhhhhccccCccCceeCCc
Confidence 44444445667777778544
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.5e-38 Score=342.62 Aligned_cols=295 Identities=26% Similarity=0.462 Sum_probs=207.9
Q ss_pred CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCCCCCCCCCCc--cceeecCCCCCCCCCCcCCCCCCEEECCCCCCCC-
Q 041908 26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWVDNRTSDCCS--WERIKCNVTTANYNNNGSLKQLKILNIGFNSFSE- 102 (883)
Q Consensus 26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~~~~~~~cc~--w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~- 102 (883)
.|.++|++||++||+++.++ . .+++|. . +++||. |.||+|+..+. ..++++|+|++|.+.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~------~-~l~~W~-~-~~~~C~~~w~gv~C~~~~~-------~~~l~~L~L~~~~l~~~ 65 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNP------T-TLSSWL-P-TTDCCNRTWLGVLCDTDTQ-------TYRVNNLDLSGLNLPKP 65 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCC------G-GGTTCC-T-TSCTTTTCSTTEEECCSSS-------CCCEEEEEEECCCCSSC
T ss_pred CCCHHHHHHHHHHHHhcCCc------c-cccCCC-C-CCCCCcCCCcceEeCCCCC-------CceEEEEECCCCCccCC
Confidence 59999999999999999532 2 689993 3 478998 99999986431 1379999999999998
Q ss_pred -CCchhhcCCCCCCEEeCCC-CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCC
Q 041908 103 -SLVPLLTSLTSLTSLFLEG-NNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKN 180 (883)
Q Consensus 103 -~~~~~l~~l~~L~~L~Ls~-n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~ 180 (883)
.+|+.++++++|++|+|++ |.+.+. +| ..++++++|++|++++|.+.+.+| ..+.++++
T Consensus 66 ~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p-~~l~~l~~L~~L~Ls~n~l~~~~p-----------------~~~~~l~~ 126 (313)
T 1ogq_A 66 YPIPSSLANLPYLNFLYIGGINNLVGP-IP-PAIAKLTQLHYLYITHTNVSGAIP-----------------DFLSQIKT 126 (313)
T ss_dssp EECCGGGGGCTTCSEEEEEEETTEESC-CC-GGGGGCTTCSEEEEEEECCEEECC-----------------GGGGGCTT
T ss_pred cccChhHhCCCCCCeeeCCCCCccccc-CC-hhHhcCCCCCEEECcCCeeCCcCC-----------------HHHhCCCC
Confidence 8899999999999999995 888776 77 578888999999998888887777 77888888
Q ss_pred CCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCC-CCCEEeccCCcCccccChHhhhcCCCCcEEE
Q 041908 181 LVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLT-SLEYLSLSGNNFQGSFSLSVLANHSRLEVLQ 259 (883)
Q Consensus 181 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~-~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~ 259 (883)
|++|+|++|.+++.+|..++++++|++|++++|++++.+| ..++.++ +|++|++++|++++.+|. .+..++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~------ 198 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN------ 198 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC------
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC-HHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc------
Confidence 8888888888888888888888888888888888888888 6777777 888888888887765552 233322
Q ss_pred ccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccc
Q 041908 260 ISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKG 339 (883)
Q Consensus 260 L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 339 (883)
|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|.
T Consensus 199 ------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------- 239 (313)
T 1ogq_A 199 ------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--------------------- 239 (313)
T ss_dssp ------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---------------------
T ss_pred ------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---------------------
Confidence 23333344444444555555555555555555555543332
Q ss_pred cccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCc
Q 041908 340 LLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNN 408 (883)
Q Consensus 340 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 408 (883)
...+++|++|++++|.+.+.+|..+.. +++|++|++++|++++.+|.. +.+++|+.+++++|.
T Consensus 240 ----~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 ----VGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ----CCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ----ccccCCCCEEECcCCcccCcCChHHhc-CcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 112344444555555555555555543 555666666666555555543 555555555555554
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.9e-38 Score=354.61 Aligned_cols=368 Identities=19% Similarity=0.147 Sum_probs=214.0
Q ss_pred ccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccc
Q 041908 284 RRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGM 363 (883)
Q Consensus 284 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~ 363 (883)
..+...+..+..++.+++|++|++++|.+++ +| . +..+++|++|++++|.+++++ ...+++|++|++++|.+.+.
T Consensus 26 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 26 AAFEMQATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp HHTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC
T ss_pred HhcCcCcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee
Confidence 3344455556677788888888888888884 45 3 347777888877777776652 33445555555555555442
Q ss_pred cchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCccccc
Q 041908 364 LPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM 443 (883)
Q Consensus 364 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 443 (883)
| +. .+++|++|++++|++++ +| ++.+++|++|++++|++++ ++ +.
T Consensus 101 -~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~---------------------------l~ 145 (457)
T 3bz5_A 101 -D--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID---------------------------VS 145 (457)
T ss_dssp -C--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC---------------------------CT
T ss_pred -e--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec---------------------------cc
Confidence 2 22 24555555555555543 22 4455555555555555542 22 33
Q ss_pred CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523 (883)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 523 (883)
.+++|++|++++|+..+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++|++++. .+..+++|+.|
T Consensus 146 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L 217 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL 217 (457)
T ss_dssp TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence 4444444444444333333 23444555555555555553 23 44555555555555555543 24555555555
Q ss_pred ecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908 524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ 603 (883)
Q Consensus 524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 603 (883)
++++|++++ +| +..+++|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|++.
T Consensus 218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQL 277 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTC
T ss_pred ECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccC
Confidence 555555555 23 445555555555555555432 234455555555544 2344555555555
Q ss_pred ccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhh
Q 041908 604 GNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRE 683 (883)
Q Consensus 604 g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 683 (883)
|.+| +..+++|+.|++++|+..+.+|.....+.
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~--------------------------------------------- 310 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT--------------------------------------------- 310 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS---------------------------------------------
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcce---------------------------------------------
Confidence 5555 34556666666666665555543221110
Q ss_pred hcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECC
Q 041908 684 LRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLS 763 (883)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs 763 (883)
.+.....++|+.|+|++|+|+| +| ++.+++|+.|++++|++++ ++.|+.|+++
T Consensus 311 ----------------~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~ 363 (457)
T 3bz5_A 311 ----------------ELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPAL 363 (457)
T ss_dssp ----------------CCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGG
T ss_pred ----------------EechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------cccccccccc
Confidence 0000113567889999999997 43 8899999999999999986 2456677899
Q ss_pred CCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 764 YNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 764 ~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
+|+++|. .++..|..+++++|+++|.||..
T Consensus 364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 9999987 24456778899999999999965
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.3e-37 Score=347.35 Aligned_cols=320 Identities=20% Similarity=0.213 Sum_probs=163.8
Q ss_pred CCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCC
Q 041908 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWL 273 (883)
Q Consensus 194 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 273 (883)
..+..++++++|++|++++|.++ .+| .++.+++|++|++++|++++ ++ ++.+++|++|
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L--------------- 90 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYL--------------- 90 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEE---------------
T ss_pred ccccChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEE---------------
Confidence 34445556666666666666666 344 35666666666666666553 22 3333333333
Q ss_pred CCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEE
Q 041908 274 PRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHL 353 (883)
Q Consensus 274 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L 353 (883)
++++|.+++. + ++.+++|++|++++|++++ +| +..+++|++|++++|.+++++ ...
T Consensus 91 --------~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~--l~~------- 146 (457)
T 3bz5_A 91 --------ACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID--VSH------- 146 (457)
T ss_dssp --------ECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC--CTT-------
T ss_pred --------ECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec--ccc-------
Confidence 2333333322 1 4566777788888887774 44 235666666666666555431 112
Q ss_pred EccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcc
Q 041908 354 VISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY 433 (883)
Q Consensus 354 ~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 433 (883)
+++|++|++++|+..+.+ .++.+++|++|++++|++++ +| +..+++|+.|++++|.
T Consensus 147 ------------------l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 147 ------------------NTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp ------------------CTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSC
T ss_pred ------------------CCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCc
Confidence 445555555555433333 24455555555555555552 33 2344555555555555
Q ss_pred cCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCcc
Q 041908 434 FGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVP 513 (883)
Q Consensus 434 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 513 (883)
+++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++.. ++.+++|+.|++++|
T Consensus 203 l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------- 264 (457)
T 3bz5_A 203 ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------- 264 (457)
T ss_dssp CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------
T ss_pred CCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------
Confidence 5443 24445555555555555554 23 445555555555555555432 234455555555443
Q ss_pred ccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCc
Q 041908 514 LSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLR 593 (883)
Q Consensus 514 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 593 (883)
+|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|. ..++|+.|++++| ++|+
T Consensus 265 -----~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~ 321 (457)
T 3bz5_A 265 -----DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLV 321 (457)
T ss_dssp -----CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCC
T ss_pred -----CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCC
Confidence 23345555555555544 23455555555555555555543 2233444443333 3555
Q ss_pred EEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908 594 ALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 594 ~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
+|++++|++++ ++ ++.+++|+.||+++|+++
T Consensus 322 ~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 322 YLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp EEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred EEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence 55555555554 22 555555555555555554
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-35 Score=337.01 Aligned_cols=280 Identities=23% Similarity=0.286 Sum_probs=160.9
Q ss_pred CCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEE
Q 041908 420 GCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVL 499 (883)
Q Consensus 420 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 499 (883)
.+++|++|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+..+ +.++++|++|
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L 182 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERL 182 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEE
Confidence 34444444444444433221 34444455555555544432 1 24445555555554 23332211 5555555555
Q ss_pred ECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCC
Q 041908 500 LMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFS 579 (883)
Q Consensus 500 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~ 579 (883)
++++|.+++. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|++++. +.+..+++|+.|++++|+++
T Consensus 183 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 183 DISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 5555555432 224555556666666665555444 44555666666666666532 34556666666666666666
Q ss_pred ccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccc
Q 041908 580 GNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVE 659 (883)
Q Consensus 580 ~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (883)
+..| +..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~------------------------- 305 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I------------------------- 305 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--G-------------------------
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--h-------------------------
Confidence 5433 5666667777777776665333 6666777777777776654222 1
Q ss_pred cccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCC
Q 041908 660 HFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLS 739 (883)
Q Consensus 660 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls 739 (883)
..+++|+.|+|++|++++..| ++.+++|+.|+++
T Consensus 306 --------------------------------------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 306 --------------------------------------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 339 (466)
T ss_dssp --------------------------------------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECC
T ss_pred --------------------------------------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECC
Confidence 114566777777777776555 5677777777777
Q ss_pred CCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908 740 HNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793 (883)
Q Consensus 740 ~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g 793 (883)
+|++++. ..++++++|+.|++++|++++.+| +..+++|+.|++++|++++
T Consensus 340 ~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 340 NNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 7777754 356777777777777777776665 6677777777777777776
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3e-35 Score=335.84 Aligned_cols=360 Identities=23% Similarity=0.300 Sum_probs=305.8
Q ss_pred CCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCC
Q 041908 310 NNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSI 389 (883)
Q Consensus 310 n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 389 (883)
+.+.+.++.. .+++++.|++.++.+..++. ...+++|++|++++|.+.+..| +. .+++|++|++++|.+++..
T Consensus 34 ~~~~~~i~~~---~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 34 TNVTDTVSQT---DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LK-NLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp SSTTSEECHH---HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCCCCCG
T ss_pred cccccccChh---HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hh-ccccCCEEECCCCccccCh
Confidence 4444455542 56789999999999987653 4578999999999999987654 54 4999999999999998654
Q ss_pred CccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCC
Q 041908 390 PPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNA 469 (883)
Q Consensus 390 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 469 (883)
+ ++.+++|++|++++|.+. .++. +..+++|++|++++|.+.+. +.+..+++|++|++. |.+.+..+ +..+
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~~--~~~l 176 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP--LANL 176 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCGG--GTTC
T ss_pred h--hcCCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCchh--hccC
Confidence 4 999999999999999998 4554 57899999999999999874 358899999999996 55654433 8899
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
++|++|++++|.+.+. + .+..+++|++|++++|.+++..| +..+++|+.|++++|++.+. ..+..+++|+.|++
T Consensus 177 ~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI-S-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp TTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECcCCcCCCC-h-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 9999999999999854 3 48899999999999999998766 77899999999999999875 35788999999999
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCC
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS 629 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~ 629 (883)
++|.+++..| +..+++|+.|++++|++++..+ +..+++|++|++++|++.+..| +..+++|+.|++++|++++.
T Consensus 251 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 251 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 9999987654 8899999999999999997544 8899999999999999997544 88999999999999999865
Q ss_pred CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccc
Q 041908 630 IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM 709 (883)
Q Consensus 630 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 709 (883)
.| +. .+++|
T Consensus 325 ~~--~~---------------------------------------------------------------------~l~~L 333 (466)
T 1o6v_A 325 SP--VS---------------------------------------------------------------------SLTKL 333 (466)
T ss_dssp GG--GG---------------------------------------------------------------------GCTTC
T ss_pred hh--hc---------------------------------------------------------------------cCccC
Confidence 44 11 15788
Q ss_pred cEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcc
Q 041908 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLE 774 (883)
Q Consensus 710 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~ 774 (883)
+.|++++|++++. ..++.+++|+.|++++|++++.+| ++.+++|+.|++++|++++ +|..
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 9999999999965 478999999999999999999888 8999999999999999997 3443
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.7e-36 Score=323.11 Aligned_cols=258 Identities=31% Similarity=0.528 Sum_probs=216.0
Q ss_pred CCCEEECCCCcCCC--CCCccccCCCcccEEecCC-CcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEE
Q 041908 495 NLDVLLMSRNSLEG--DVSVPLSNLQVARILDISE-NKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL 571 (883)
Q Consensus 495 ~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 571 (883)
+++.|++++|.+++ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45556666666655 5566666666666666663 66666667777777777888888888877788888888888888
Q ss_pred eccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCC-CCCEEEcCCCcCCCCCCcccccccccccCCCCCCCc
Q 041908 572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR-KIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGF 650 (883)
Q Consensus 572 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~ 650 (883)
++++|++++.+|..+..+++|++|++++|+++|.+|..+..++ +|+.|++++|++++.+|..+..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------- 196 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------- 196 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence 8888888888888888888888888888888888888888887 8888898888888777765533
Q ss_pred ccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccccc
Q 041908 651 VFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYL 730 (883)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 730 (883)
++ |+.|||++|++++.+|..++.+
T Consensus 197 -------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l 220 (313)
T 1ogq_A 197 -------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSD 220 (313)
T ss_dssp -------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTT
T ss_pred -------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcC
Confidence 23 7889999999999999999999
Q ss_pred ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccC
Q 041908 731 QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYR 810 (883)
Q Consensus 731 ~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~ 810 (883)
++|+.|+|++|++++.+|. +..+++|++|||++|+++|.+|..+..+++|+.|++++|+++|.+|...++..+....+.
T Consensus 221 ~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp SCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred CCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhc
Confidence 9999999999999988777 889999999999999999999999999999999999999999999999888888888999
Q ss_pred CCcCCCCCCCCCCC
Q 041908 811 GNLNLCGPAVLKNC 824 (883)
Q Consensus 811 gn~~lc~~~~~~~c 824 (883)
||+.+||.|+. .|
T Consensus 300 ~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 300 NNKCLCGSPLP-AC 312 (313)
T ss_dssp SSSEEESTTSS-CC
T ss_pred CCCCccCCCCC-CC
Confidence 99999998865 46
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-35 Score=338.09 Aligned_cols=347 Identities=20% Similarity=0.174 Sum_probs=241.9
Q ss_pred EEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCc
Q 041908 377 YLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDN 456 (883)
Q Consensus 377 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 456 (883)
.++.+++.++ .+|..+. +.++.|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4444455444 3443332 35555566665555 333333355666666666666666555666666666777777777
Q ss_pred ccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcccc
Q 041908 457 QFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEF 536 (883)
Q Consensus 457 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 536 (883)
++++..+..|.++++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..|.++++|+.|++++|++++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 66655555566677777777777777766666677777777777777777766666777777777777777777766666
Q ss_pred ccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCC
Q 041908 537 SFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKI 616 (883)
Q Consensus 537 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L 616 (883)
.+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|.......+|++|++++|++++..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 67777777777777777776666677777888888888877777777666666688888888888885444678888888
Q ss_pred CEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecc
Q 041908 617 AIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKN 696 (883)
Q Consensus 617 ~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 696 (883)
+.|++++|++++..+..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~------------------------------------------------------------ 270 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHE------------------------------------------------------------ 270 (477)
T ss_dssp CEEECCSSCCCEECTTSCTT------------------------------------------------------------
T ss_pred CeeECCCCcCCccChhhccc------------------------------------------------------------
Confidence 88888888877544433321
Q ss_pred ccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCcccc
Q 041908 697 RYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELS 776 (883)
Q Consensus 697 ~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~ 776 (883)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+...
T Consensus 271 ---------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~- 340 (477)
T 2id5_A 271 ---------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW- 340 (477)
T ss_dssp ---------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-
T ss_pred ---------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-
Confidence 4678889999999998888889999999999999999998888888999999999999999886543211
Q ss_pred CCCCCcEEEccCCcCcccCCC
Q 041908 777 ELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 777 ~l~~L~~l~ls~N~l~g~ip~ 797 (883)
-......+++..+...|..|.
T Consensus 341 ~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 341 VFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp HHTTTTSSCCTTCCCBEEESG
T ss_pred HHhhhhccccCccCceeCCch
Confidence 112233455666766666664
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-34 Score=341.09 Aligned_cols=335 Identities=22% Similarity=0.215 Sum_probs=272.8
Q ss_pred cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEE
Q 041908 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL 475 (883)
Q Consensus 396 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 475 (883)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456777777777776 6777777778888888888888877777778888888888888888888877778888888888
Q ss_pred EccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccc
Q 041908 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLN 555 (883)
Q Consensus 476 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 555 (883)
++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 88888888665566788888888888888888888888888888888888888887653 455678888999988887
Q ss_pred cccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccc
Q 041908 556 GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFT 635 (883)
Q Consensus 556 ~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 635 (883)
+. ...++|+.|++++|.++... ..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++.+|..+.
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~-~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVR-GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEE-CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----cCCchhheeeccCCcccccc-ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 42 34467999999999988543 322 3689999999999987 47788999999999999999877776553
Q ss_pred cccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEcc
Q 041908 636 NIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLS 715 (883)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 715 (883)
. +++|+.|+|+
T Consensus 276 ~---------------------------------------------------------------------l~~L~~L~Ls 286 (597)
T 3oja_B 276 K---------------------------------------------------------------------MQRLERLYIS 286 (597)
T ss_dssp T---------------------------------------------------------------------CSSCCEEECT
T ss_pred C---------------------------------------------------------------------ccCCCEEECC
Confidence 3 4678999999
Q ss_pred CCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccC
Q 041908 716 SNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPT 795 (883)
Q Consensus 716 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~i 795 (883)
+|++++ +|..++.+++|+.|+|++|.++ .+|..++.+++|+.|||++|++++.. +..+++|+.|++++|+++|.+
T Consensus 287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence 999995 6777888999999999999999 67888999999999999999998653 667789999999999999975
Q ss_pred CCCccCCCCCCcccCCCcCCCCCC
Q 041908 796 PNTKQFANFDESNYRGNLNLCGPA 819 (883)
Q Consensus 796 p~~~~~~~~~~~~~~gn~~lc~~~ 819 (883)
+. ..+.++....+.+++..|+.+
T Consensus 362 ~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 362 LR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp HH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred HH-HHHHHHhhhccccccccCCcc
Confidence 43 346677777889999999863
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-34 Score=321.66 Aligned_cols=335 Identities=22% Similarity=0.217 Sum_probs=270.1
Q ss_pred ccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCE
Q 041908 395 YTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHI 474 (883)
Q Consensus 395 ~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 474 (883)
.+++++.|++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3567788888888876 777777778888888888888888777777888888888888888888887888888888889
Q ss_pred EEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcc
Q 041908 475 LDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSL 554 (883)
Q Consensus 475 L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 554 (883)
|++++|.++...+..+.++++|++|++++|++++..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 99988888855445568888899999999988888888888888999999999888765 245677889999999888
Q ss_pred ccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccc
Q 041908 555 NGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF 634 (883)
Q Consensus 555 ~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 634 (883)
++. ...++|+.|++++|+++.. |.. ..++|++|++++|++++. ..+..+++|+.|++++|.+++..|..+
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 742 3346899999999998854 433 247899999999999863 578889999999999999887666544
Q ss_pred ccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEc
Q 041908 635 TNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDL 714 (883)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdL 714 (883)
.. +++|+.|+|
T Consensus 269 ~~---------------------------------------------------------------------l~~L~~L~L 279 (390)
T 3o6n_A 269 VK---------------------------------------------------------------------MQRLERLYI 279 (390)
T ss_dssp TT---------------------------------------------------------------------CSSCCEEEC
T ss_pred cc---------------------------------------------------------------------cccCCEEEC
Confidence 32 467899999
Q ss_pred cCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCccc
Q 041908 715 SSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGP 794 (883)
Q Consensus 715 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ 794 (883)
++|++++ +|..++.+++|++|+|++|+++ .+|..++.+++|+.|||++|++++. | +..+++|+.|++++|+++|.
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 9999984 6777788999999999999999 5677899999999999999999865 3 67788999999999999985
Q ss_pred CCCCccCCCCCCcccCCCcCCCCC
Q 041908 795 TPNTKQFANFDESNYRGNLNLCGP 818 (883)
Q Consensus 795 ip~~~~~~~~~~~~~~gn~~lc~~ 818 (883)
... ..+..+....+.+++..|+.
T Consensus 355 ~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 355 SLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred hHH-HHHHHHHhhcccccCceecc
Confidence 433 34455666667788877764
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.3e-32 Score=299.69 Aligned_cols=304 Identities=21% Similarity=0.302 Sum_probs=179.9
Q ss_pred CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL 451 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 451 (883)
+++|++|++++|.+. .++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.++.. +.
T Consensus 43 l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~---------- 105 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SA---------- 105 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GG----------
T ss_pred cccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hH----------
Confidence 566666666666665 333 3556666666666666665 3333 34555555555555555432 23
Q ss_pred EccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCc
Q 041908 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531 (883)
Q Consensus 452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 531 (883)
+..+++|++|++++|.+.+. +. +..+++|++|++++|.....++. +..+++|++|++++|.+.
T Consensus 106 --------------~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 106 --------------LQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp --------------GTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred --------------HcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcC
Confidence 44445555555555554432 22 44555555555555543333322 455555555555555554
Q ss_pred CccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC 611 (883)
Q Consensus 532 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~ 611 (883)
+..+ +..+++|++|++++|.+++ ++. +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +.
T Consensus 169 ~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 169 DVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp CCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred Cchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 4333 4555566666666666653 222 5566666666666666664433 5666667777777776664332 66
Q ss_pred CCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEE
Q 041908 612 HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVK 691 (883)
Q Consensus 612 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 691 (883)
.+++|+.|++++|.+++. + .+
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~-~~--------------------------------------------------------- 261 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI-N-AV--------------------------------------------------------- 261 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-G-GG---------------------------------------------------------
T ss_pred cCCCCCEEECCCCccCCC-h-hH---------------------------------------------------------
Confidence 677777777777766531 1 11
Q ss_pred EeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccC
Q 041908 692 FMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771 (883)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~i 771 (883)
..+++|+.|++++|++++. | .+..+++|+.|+|++|.+++..|..++.+++|+.|++++|++++..
T Consensus 262 ------------~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 327 (347)
T 4fmz_A 262 ------------KDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327 (347)
T ss_dssp ------------TTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG
T ss_pred ------------hcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc
Confidence 1145677777777777743 3 4677777888888888887777777777888888888888877665
Q ss_pred CccccCCCCCcEEEccCCcCc
Q 041908 772 PLELSELNYLAIFNVSYNDLS 792 (883)
Q Consensus 772 p~~l~~l~~L~~l~ls~N~l~ 792 (883)
| +..+++|+.|++++|+++
T Consensus 328 ~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 328 P--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp G--GGGCTTCSEESSSCC---
T ss_pred C--hhhhhccceeehhhhccc
Confidence 5 677777888888887764
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.6e-32 Score=297.35 Aligned_cols=305 Identities=21% Similarity=0.328 Sum_probs=214.6
Q ss_pred CCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCC
Q 041908 346 SKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLA 425 (883)
Q Consensus 346 ~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~ 425 (883)
.+++|++|++++|.+.. +|. +.. +++|++|++++|.+++ ++. +..+++|++|++++|.++ .++. +..+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~~-~~~-~~~-~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-IQG-IEY-LTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCCC-CTT-GGG-CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCS
T ss_pred hcccccEEEEeCCcccc-chh-hhh-cCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchH--HcCCCcCC
Confidence 57899999999999864 443 544 8999999999999985 444 899999999999999998 5653 57888888
Q ss_pred EEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCc
Q 041908 426 FMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS 505 (883)
Q Consensus 426 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 505 (883)
+|++++|.+.+..+ +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 88888888775432 55666666666666644433332 4555555555555555553322 4445555555555554
Q ss_pred CCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcc
Q 041908 506 LEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPL 585 (883)
Q Consensus 506 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~ 585 (883)
+. +..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+
T Consensus 189 l~------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 189 IE------------------------DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CC------------------------CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cc------------------------cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 44 3322 4455556666666666553322 5666677777777777764333
Q ss_pred ccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchh
Q 041908 586 INEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAIS 665 (883)
Q Consensus 586 l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (883)
+..+++|++|++++|++++. +.+..+++|+.|++++|++++. | .+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~------------------------------- 283 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VL------------------------------- 283 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GG-------------------------------
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hh-------------------------------
Confidence 66777777777777777652 4577778888888888877642 1 11
Q ss_pred hhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCc
Q 041908 666 AYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSG 745 (883)
Q Consensus 666 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 745 (883)
..+++|+.|++++|++++..|..++.+++|++|+|++|++++
T Consensus 284 --------------------------------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 284 --------------------------------------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp --------------------------------------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred --------------------------------------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 115678999999999998999999999999999999999998
Q ss_pred CCCccccCcCCCCEEECCCCccc
Q 041908 746 SIPRSFSNLKMIESMDLSYNKLR 768 (883)
Q Consensus 746 ~ip~~l~~l~~L~~LdLs~N~Ls 768 (883)
..| ++.+++|+.||+++|+++
T Consensus 326 ~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG--GGGCTTCSEESSSCC---
T ss_pred ccC--hhhhhccceeehhhhccc
Confidence 777 899999999999999986
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.2e-33 Score=308.79 Aligned_cols=333 Identities=19% Similarity=0.142 Sum_probs=231.3
Q ss_pred CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL 451 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 451 (883)
+++++.|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 345555555555555322223455555555555555555 3333334555666666666666665555556666677777
Q ss_pred EccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCc
Q 041908 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLY 531 (883)
Q Consensus 452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 531 (883)
++++|+++...+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 7777776654444456677777777777777766666677777777777777777654 2455677777888877765
Q ss_pred CccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908 532 GPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC 611 (883)
Q Consensus 532 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~ 611 (883)
+. ...++|++|++++|.++.. |.. ..++|+.|++++|++++. .++..+++|++|++++|++++..|..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 42 2345788888888888743 433 247899999999999864 5788899999999999999988899999
Q ss_pred CCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEE
Q 041908 612 HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVK 691 (883)
Q Consensus 612 ~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 691 (883)
.+++|+.|++++|++++. |..+
T Consensus 270 ~l~~L~~L~L~~n~l~~~-~~~~--------------------------------------------------------- 291 (390)
T 3o6n_A 270 KMQRLERLYISNNRLVAL-NLYG--------------------------------------------------------- 291 (390)
T ss_dssp TCSSCCEEECCSSCCCEE-ECSS---------------------------------------------------------
T ss_pred ccccCCEEECCCCcCccc-Cccc---------------------------------------------------------
Confidence 999999999999988642 2111
Q ss_pred EeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccC
Q 041908 692 FMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQI 771 (883)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~i 771 (883)
..+++|+.|||++|+++ .+|..++.+++|+.|+|++|++++. | ++.+++|+.|++++|++++.-
T Consensus 292 ------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 292 ------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 12578999999999999 7788899999999999999999855 3 788999999999999998754
Q ss_pred CccccCCCCCcEEEccCCcCccc
Q 041908 772 PLELSELNYLAIFNVSYNDLSGP 794 (883)
Q Consensus 772 p~~l~~l~~L~~l~ls~N~l~g~ 794 (883)
...+ +..+....+..+...+.
T Consensus 356 ~~~~--~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 356 LRAL--FRNVARPAVDDADQHCK 376 (390)
T ss_dssp HHHH--TTTCCTTTBCCCCSCCC
T ss_pred HHHH--HHHHHhhcccccCceec
Confidence 3322 22333333445544443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-32 Score=319.43 Aligned_cols=312 Identities=18% Similarity=0.151 Sum_probs=219.8
Q ss_pred CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY 452 (883)
Q Consensus 373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 452 (883)
++++.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 44555555555554333333445555555555555554 23322234555555555555555555555556666666666
Q ss_pred ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908 453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532 (883)
Q Consensus 453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 532 (883)
+++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 6666666555555566777777777777777666666777777777777777776542 4456677777777777654
Q ss_pred ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908 533 PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH 612 (883)
Q Consensus 533 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~ 612 (883)
. ...++|+.|++++|.++. +|..+ .++|+.|+|++|.+++ +.++..+++|+.|+|++|.+++.+|..+..
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2 234578888888888763 33322 3689999999999986 367888999999999999999888999999
Q ss_pred CCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908 613 LRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF 692 (883)
Q Consensus 613 l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 692 (883)
+++|+.|++++|.+++. |..+
T Consensus 277 l~~L~~L~Ls~N~l~~l-~~~~---------------------------------------------------------- 297 (597)
T 3oja_B 277 MQRLERLYISNNRLVAL-NLYG---------------------------------------------------------- 297 (597)
T ss_dssp CSSCCEEECTTSCCCEE-ECSS----------------------------------------------------------
T ss_pred ccCCCEEECCCCCCCCC-Cccc----------------------------------------------------------
Confidence 99999999999988752 2211
Q ss_pred eeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908 693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP 772 (883)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip 772 (883)
..+++|+.|||++|.++ .+|..++.+++|+.|+|++|.+++. | ++.+++|+.|+|++|++++..+
T Consensus 298 -----------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 298 -----------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp -----------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred -----------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 12578899999999999 7888899999999999999999965 3 7788999999999999997644
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.4e-35 Score=334.80 Aligned_cols=381 Identities=18% Similarity=0.143 Sum_probs=240.9
Q ss_pred CCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCC----CCCccccccCcccEEeccCCcccCccchhHhhCCC-
Q 041908 348 RDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEG----SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCV- 422 (883)
Q Consensus 348 ~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~- 422 (883)
++|++|++++|++.......+...+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566777777776654444433347888888888888774 34566777788888888888887555556656666
Q ss_pred ---CCCEEEccCcccCC----cCcccccCCCCCCeEEccCcccCcccccccc-----CCCCCCEEEccCCccCCC----c
Q 041908 423 ---SLAFMNVSHNYFGG----QIFPKYMSMTQLAWLYLNDNQFTGRLEEGLL-----NAPSLHILDVSNNMLSGQ----L 486 (883)
Q Consensus 423 ---~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~ 486 (883)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 3466677788888888888887654333222 245688888888877753 3
Q ss_pred chhhhCCCCCCEEECCCCcCCCCCCcccc-----CCCcccEEecCCCcCcCc----cccccccCCCcCeeecccCccccc
Q 041908 487 PHWVGNFSNLDVLLMSRNSLEGDVSVPLS-----NLQVARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNSLNGS 557 (883)
Q Consensus 487 p~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~ 557 (883)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 55566677888888888877654333332 245777777777777663 355556667777777777776643
Q ss_pred cch-----hhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCcccccCchhhcC-----CCCCCEEEcCC
Q 041908 558 IPS-----ALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGNIPQQLCH-----LRKIAIVDISY 623 (883)
Q Consensus 558 ~p~-----~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~-----l~~L~~L~ls~ 623 (883)
... .+..+++|++|++++|++++. ++..+..+++|++|++++|++.+..+..+.. .++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 221 122467777777777777753 4556666777777777777776544444332 25777777777
Q ss_pred CcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccc
Q 041908 624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG 703 (883)
Q Consensus 624 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (883)
|.+++.....+... .
T Consensus 323 n~l~~~~~~~l~~~-----------------------------------------------------------------l 337 (461)
T 1z7x_W 323 CSFTAACCSHFSSV-----------------------------------------------------------------L 337 (461)
T ss_dssp SCCBGGGHHHHHHH-----------------------------------------------------------------H
T ss_pred CCCchHHHHHHHHH-----------------------------------------------------------------H
Confidence 76653211100000 0
Q ss_pred cccccccEEEccCCcCcccCcccccc-----cccCCeeeCCCCcCCc----CCCccccCcCCCCEEECCCCcccccCCcc
Q 041908 704 GVLEYMTGLDLSSNELTGEIPSAIGY-----LQELHALNLSHNHLSG----SIPRSFSNLKMIESMDLSYNKLRGQIPLE 774 (883)
Q Consensus 704 ~~l~~L~~LdLs~N~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~ 774 (883)
..+++|+.|||++|++++..+..+.. .+.|++|+|++|++++ .+|..+..+++|++|||++|++++.-...
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHH
Confidence 01356677777777777655554443 4577777777777775 66777777777777777777776541111
Q ss_pred cc-----CCCCCcEEEccCCcCcc
Q 041908 775 LS-----ELNYLAIFNVSYNDLSG 793 (883)
Q Consensus 775 l~-----~l~~L~~l~ls~N~l~g 793 (883)
+. ....|+.|++.++.+..
T Consensus 418 l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTCCCCH
T ss_pred HHHHhccCCcchhheeecccccCH
Confidence 11 12345556555555443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=2.9e-31 Score=288.85 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=166.9
Q ss_pred cccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEc
Q 041908 398 RLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDV 477 (883)
Q Consensus 398 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 477 (883)
+++.++++++.+. .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5677777777766 666543 245566666666655554555555555555555555555555555555555555555
Q ss_pred cCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccc
Q 041908 478 SNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGS 557 (883)
Q Consensus 478 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 557 (883)
++|.++ .+|..+. ++|++|++++|++++..+..+.++++|+.|++++|.+.. .+.
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~ 164 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN----------------------SGF 164 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG----------------------GGS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc----------------------CCC
Confidence 555554 3333332 455555555555554444444455555555555554431 113
Q ss_pred cchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908 558 IPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI 637 (883)
Q Consensus 558 ~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 637 (883)
.|..+..+ +|+.|++++|++++ +|..+. ++|++|++++|++++..|..+..+++|+.|++++|++++..|..+..
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~- 239 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF- 239 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-
T ss_pred CcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-
Confidence 33344444 55555555555553 333332 45666666666666555556666666666666666665544433321
Q ss_pred cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN 717 (883)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 717 (883)
+++|+.|||++|
T Consensus 240 --------------------------------------------------------------------l~~L~~L~L~~N 251 (332)
T 2ft3_A 240 --------------------------------------------------------------------LPTLRELHLDNN 251 (332)
T ss_dssp --------------------------------------------------------------------CTTCCEEECCSS
T ss_pred --------------------------------------------------------------------CCCCCEEECCCC
Confidence 345667777777
Q ss_pred cCcccCcccccccccCCeeeCCCCcCCcCCCccccCc------CCCCEEECCCCccc--ccCCccccCCCCCcEEEccCC
Q 041908 718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL------KMIESMDLSYNKLR--GQIPLELSELNYLAIFNVSYN 789 (883)
Q Consensus 718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~~LdLs~N~Ls--g~ip~~l~~l~~L~~l~ls~N 789 (883)
+++ .+|..++.+++|++|+|++|++++..+..|... ..|+.|++++|.++ +..|.++..++.|+.+++++|
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 777 667777777777777777777776666666543 56777888888776 566677777778888888776
Q ss_pred c
Q 041908 790 D 790 (883)
Q Consensus 790 ~ 790 (883)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.2e-31 Score=286.23 Aligned_cols=260 Identities=24% Similarity=0.305 Sum_probs=215.5
Q ss_pred ccchhhhcCCC-----CCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc
Q 041908 363 MLPDNFGMILP-----ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ 437 (883)
Q Consensus 363 ~~p~~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 437 (883)
.+|..+...+| +++.++++++.++ .+|..+. ++|++|++++|.+. .++...+.++++|++|++++|.+++.
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCcc
Confidence 45554443333 7999999999998 6777663 68999999999998 56555568999999999999999998
Q ss_pred CcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCC--CCCCcccc
Q 041908 438 IFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLE--GDVSVPLS 515 (883)
Q Consensus 438 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~~~~l~ 515 (883)
.+..+..+++|++|++++|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++ +..+..+.
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 8999999999999999999998 4555443 89999999999999777778999999999999999996 47777888
Q ss_pred CCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 041908 516 NLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL 595 (883)
Q Consensus 516 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 595 (883)
.+ +|+.|++++|++++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 171 ~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLREL 246 (332)
T ss_dssp SC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEE
T ss_pred CC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEE
Confidence 88 99999999999987 444433 689999999999987777888889999999999999998777788889999999
Q ss_pred EccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccc
Q 041908 596 LLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCF 634 (883)
Q Consensus 596 ~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~ 634 (883)
++++|+++ .+|..+..+++|+.|++++|++++..+..|
T Consensus 247 ~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 247 HLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp ECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred ECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 99999988 788888888999999999888876554444
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.2e-30 Score=280.42 Aligned_cols=268 Identities=21% Similarity=0.252 Sum_probs=177.9
Q ss_pred CCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecC
Q 041908 447 QLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS 526 (883)
Q Consensus 447 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 526 (883)
.+++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|+++. +|..+. ++|+.|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence 44455555555554444455555555555555555555555555556666666666665552 333322 566666666
Q ss_pred CCcCcCccccccccCCCcCeeecccCcccc--ccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccc
Q 041908 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNG--SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG 604 (883)
Q Consensus 527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 604 (883)
+|++.+..+..+..+++|+.|++++|.++. ..+..+..+++|++|++++|+++. +|..+. ++|++|++++|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 666666555566666667777777766642 456667777778888888877774 555443 678888888888887
Q ss_pred cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhh
Q 041908 605 NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNREL 684 (883)
Q Consensus 605 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 684 (883)
..|..+..+++|+.|++++|++++..|..+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------ 238 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------ 238 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------------------------
Confidence 77777888888888888888776544433321
Q ss_pred cceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCc------CCCC
Q 041908 685 RQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL------KMIE 758 (883)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l------~~L~ 758 (883)
+++|+.|||++|+++ .+|..+..+++|++|+|++|++++..+..|... ..|+
T Consensus 239 ---------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~ 296 (330)
T 1xku_A 239 ---------------------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296 (330)
T ss_dssp ---------------------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS
T ss_pred ---------------------CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc
Confidence 456778888888888 778788888888888888888887776666543 6788
Q ss_pred EEECCCCcccc--cCCccccCCCCCcEEEccCCc
Q 041908 759 SMDLSYNKLRG--QIPLELSELNYLAIFNVSYND 790 (883)
Q Consensus 759 ~LdLs~N~Lsg--~ip~~l~~l~~L~~l~ls~N~ 790 (883)
.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 297 ~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 297 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ceEeecCcccccccCccccccccceeEEEecccC
Confidence 88888888763 556777888888888888874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-30 Score=282.43 Aligned_cols=251 Identities=20% Similarity=0.239 Sum_probs=194.5
Q ss_pred CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY 452 (883)
Q Consensus 373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 452 (883)
.+++.++++++.++ .+|..+. +.+++|++++|+++ .++...+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 36888999988887 5665553 67888999999888 55555567888888888888888888788888888888888
Q ss_pred ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCC--CCCccccCCCcccEEecCCCcC
Q 041908 453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEG--DVSVPLSNLQVARILDISENKL 530 (883)
Q Consensus 453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l 530 (883)
+++|+++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 8888887 4454443 688888888888887777778888888888888888853 6667788888888888888887
Q ss_pred cCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhh
Q 041908 531 YGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQL 610 (883)
Q Consensus 531 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l 610 (883)
.+. |..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+
T Consensus 184 ~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TTI-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CSC-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred ccC-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 653 33332 67888888888888777777888888888888888888777777778888888888888887 677777
Q ss_pred cCCCCCCEEEcCCCcCCCCCCccc
Q 041908 611 CHLRKIAIVDISYNLLDGSIPSCF 634 (883)
Q Consensus 611 ~~l~~L~~L~ls~N~l~~~~p~~~ 634 (883)
..+++|+.|++++|++++..+..|
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ccCCCcCEEECCCCcCCccChhhc
Confidence 778888888888888775444433
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.9e-33 Score=319.68 Aligned_cols=391 Identities=16% Similarity=0.111 Sum_probs=225.5
Q ss_pred ccceEEEcccCcCCccCch-hhhcCCCCCEEEccCCCCcCC----cchHHHhcCCCCcEEEcccccccccccCCCCCCCc
Q 041908 276 FQLKVLNLRRCNISGTIPS-FLQYQYDLRYIDLSHNNLAGT----FPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDL 350 (883)
Q Consensus 276 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L 350 (883)
++|++|++++|.++..... .+..+++|++|++++|.+++. ++..+ ..+++|++|++++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~---------------- 65 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRS---------------- 65 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTT----------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCC----------------
Confidence 3677888888877654433 366777788888888777632 23322 2445555554444
Q ss_pred cEEEccCCccccccchhhhcCCC----CCcEEeCCCCcCCC----CCCccccccCcccEEeccCCcccCccchhHhh---
Q 041908 351 LHLVISNNNFIGMLPDNFGMILP----ELVYLDMSQNSFEG----SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLT--- 419 (883)
Q Consensus 351 ~~L~ls~n~l~~~~p~~~~~~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~--- 419 (883)
|.+.+..+..+...++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+..
T Consensus 66 -------n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 66 -------NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp -------CCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -------CcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 4444433434433344 57777777777763 44666777777777777777776433333222
Q ss_pred -CCCCCCEEEccCcccCCcC----cccccCCCCCCeEEccCcccCcccccccc-----CCCCCCEEEccCCccCCCcchh
Q 041908 420 -GCVSLAFMNVSHNYFGGQI----FPKYMSMTQLAWLYLNDNQFTGRLEEGLL-----NAPSLHILDVSNNMLSGQLPHW 489 (883)
Q Consensus 420 -~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~p~~ 489 (883)
..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++....
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 217 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR- 217 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-
Confidence 2345666666666555432 22233344555555555544432222221 123444444444444432000
Q ss_pred hhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCcc-----ccccccCCCcCeeecccCccccc----cch
Q 041908 490 VGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPL-----EFSFNHSSSLWHLFLHNNSLNGS----IPS 560 (883)
Q Consensus 490 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~~~----~p~ 560 (883)
.++..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+++. ++.
T Consensus 218 -------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 218 -------------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp -------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred -------------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 02333444445555555555443321 11122355666666666666643 566
Q ss_pred hhhcCCCCCEEeccCCcCCccCCccccC-----CCCCcEEEccCCccccc----CchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908 561 ALFQSSQLMTLDLRDNEFSGNIPPLINE-----DSNLRALLLRGNNLQGN----IPQQLCHLRKIAIVDISYNLLDGSIP 631 (883)
Q Consensus 561 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~-----l~~L~~L~L~~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~~~~p 631 (883)
.+..+++|++|++++|++++..+..+.. .++|++|++++|.+++. ++..+..+++|+.||+++|++++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 6666777777777777776543333322 25788888888887755 46667777888888888887765433
Q ss_pred cccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccE
Q 041908 632 SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG 711 (883)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 711 (883)
..+.... . ...+.|+.
T Consensus 359 ~~l~~~l---------------------------------------------------------------~-~~~~~L~~ 374 (461)
T 1z7x_W 359 RELCQGL---------------------------------------------------------------G-QPGSVLRV 374 (461)
T ss_dssp HHHHHHH---------------------------------------------------------------T-STTCCCCE
T ss_pred HHHHHHH---------------------------------------------------------------c-CCCCceEE
Confidence 3221100 0 01357888
Q ss_pred EEccCCcCcc----cCcccccccccCCeeeCCCCcCCcCCCcccc-----CcCCCCEEECCCCcccccCCcc
Q 041908 712 LDLSSNELTG----EIPSAIGYLQELHALNLSHNHLSGSIPRSFS-----NLKMIESMDLSYNKLRGQIPLE 774 (883)
Q Consensus 712 LdLs~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~-----~l~~L~~LdLs~N~Lsg~ip~~ 774 (883)
|||++|++++ .+|..+..+++|++|+|++|++++.-...+. ....|+.|++.++......+..
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 9999999986 7888888899999999999999865222222 2346778888777776544443
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.4e-30 Score=282.08 Aligned_cols=281 Identities=18% Similarity=0.195 Sum_probs=236.2
Q ss_pred CCcHHHHHHHHHhhhcCCcCCcccccCCccCCCC--CCCCCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCC
Q 041908 26 SCLDNERIGLLEIKTFIKSVSDMQFADAILVSWV--DNRTSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSES 103 (883)
Q Consensus 26 ~c~~~~~~all~~k~~~~~~~~~~~~~~~l~sW~--~~~~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 103 (883)
.+..+|++||++||+++..+ +.+.+.+|. .....++|.|.|+.|+..... ......+++++|+|++|.+. .
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~-----~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~-l~~~~~~~l~~L~L~~n~l~-~ 95 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNAD-----RNRWHSAWRQANSNNPQIETRTGRALKATADL-LEDATQPGRVALELRSVPLP-Q 95 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHC-----CTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHH-HHHHTSTTCCEEEEESSCCS-S
T ss_pred ccCchHHHHHHHHHHhccCC-----chhhhhhhcccccccccccccCCcchhhhHHH-HhcccccceeEEEccCCCch-h
Confidence 35678999999999988432 234567883 123468999999999632100 00012468999999999998 6
Q ss_pred CchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCE
Q 041908 104 LVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVE 183 (883)
Q Consensus 104 ~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~ 183 (883)
+|+.++++++|++|+|++|.+. . +| ..++++++|++|+|++|.+. .+| ..+.++++|++
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~-~-lp-~~~~~l~~L~~L~Ls~n~l~-~lp-----------------~~l~~l~~L~~ 154 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM-E-LP-DTMQQFAGLETLTLARNPLR-ALP-----------------ASIASLNRLRE 154 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC-C-CC-SCGGGGTTCSEEEEESCCCC-CCC-----------------GGGGGCTTCCE
T ss_pred cChhhhhCCCCCEEECCCCCcc-c-hh-HHHhccCCCCEEECCCCccc-cCc-----------------HHHhcCcCCCE
Confidence 7888999999999999999998 3 88 58999999999999999997 666 78999999999
Q ss_pred EEccCCcCCCCCCccccC---------CCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCC
Q 041908 184 LNLSWNKLDGSLPQCLSN---------LTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSR 254 (883)
Q Consensus 184 L~Ls~n~l~~~~p~~l~~---------l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~ 254 (883)
|+|++|++.+.+|..+.. +++|++|++++|.++ .+| ..++++++|++|++++|++++ ++. .+..+++
T Consensus 155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~ 230 (328)
T 4fcg_A 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP-ASIANLQNLKSLKIRNSPLSA-LGP-AIHHLPK 230 (328)
T ss_dssp EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCC-GGGGGCTTCCEEEEESSCCCC-CCG-GGGGCTT
T ss_pred EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cch-HhhcCCCCCCEEEccCCCCCc-Cch-hhccCCC
Confidence 999999999999988765 999999999999999 899 779999999999999999995 554 5889999
Q ss_pred CcEEEccCcccccCCC-CCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcc
Q 041908 255 LEVLQISRLQIETENF-PWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLF 333 (883)
Q Consensus 255 L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 333 (883)
|++|++++|.+....+ .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.++. ++++|+.+++.
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~-~L~~L~~l~l~ 309 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA-QLPANCIILVP 309 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG-GSCTTCEEECC
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh-hccCceEEeCC
Confidence 9999999988776554 455678999999999999999999999999999999999999999999876 88999998888
Q ss_pred cccccc
Q 041908 334 NNFLKG 339 (883)
Q Consensus 334 ~n~l~~ 339 (883)
.+.+..
T Consensus 310 ~~~~~~ 315 (328)
T 4fcg_A 310 PHLQAQ 315 (328)
T ss_dssp GGGSCC
T ss_pred HHHHHH
Confidence 776554
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1e-28 Score=265.53 Aligned_cols=252 Identities=23% Similarity=0.235 Sum_probs=187.1
Q ss_pred EEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc--cccccccCCCcCeeeccc
Q 041908 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP--LEFSFNHSSSLWHLFLHN 551 (883)
Q Consensus 474 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~L~~L~L~~ 551 (883)
.++.+++.++ .+|..+. ++|++|++++|+++...+..+.++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455555444 3343222 4556666666666544444455666666666666666532 244555566777777777
Q ss_pred CccccccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC-C
Q 041908 552 NSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG-S 629 (883)
Q Consensus 552 n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~-~ 629 (883)
|.++ .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..+..+++|+.|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7776 456667777888888888888876544 567788888888888888887778888888888888888888765 3
Q ss_pred CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccc
Q 041908 630 IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYM 709 (883)
Q Consensus 630 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 709 (883)
+|..+.. +++|
T Consensus 167 ~~~~~~~---------------------------------------------------------------------l~~L 177 (306)
T 2z66_A 167 LPDIFTE---------------------------------------------------------------------LRNL 177 (306)
T ss_dssp ECSCCTT---------------------------------------------------------------------CTTC
T ss_pred chhHHhh---------------------------------------------------------------------CcCC
Confidence 4433321 4678
Q ss_pred cEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC-CCcEEEccC
Q 041908 710 TGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN-YLAIFNVSY 788 (883)
Q Consensus 710 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~-~L~~l~ls~ 788 (883)
+.|||++|++++..|..++.+++|++|+|++|++++..+..++.+++|+.|||++|++++.+|..+..++ +|++|++++
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 8999999999988888999999999999999999988888899999999999999999999999999884 899999999
Q ss_pred CcCcccCCCC
Q 041908 789 NDLSGPTPNT 798 (883)
Q Consensus 789 N~l~g~ip~~ 798 (883)
|+++|.++..
T Consensus 258 N~~~~~c~~~ 267 (306)
T 2z66_A 258 NDFACTCEHQ 267 (306)
T ss_dssp CCEECSGGGH
T ss_pred CCeecccChH
Confidence 9999876643
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.4e-29 Score=273.33 Aligned_cols=207 Identities=18% Similarity=0.106 Sum_probs=105.8
Q ss_pred cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEE
Q 041908 396 TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHIL 475 (883)
Q Consensus 396 l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 475 (883)
++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 333444555666555 5554331 244444444444443333334444444444444444444444444444444444
Q ss_pred EccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccc-cccccCCCcCeeecccCc-
Q 041908 476 DVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLE-FSFNHSSSLWHLFLHNNS- 553 (883)
Q Consensus 476 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~~~~L~~L~L~~n~- 553 (883)
++++|.++ +..+..+.++++|++|++++|++.+..+ ..+..+++|++|++++|.
T Consensus 106 ~Ls~n~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~ 161 (353)
T 2z80_A 106 DLSYNYLS------------------------NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161 (353)
T ss_dssp ECCSSCCS------------------------SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCcCC------------------------cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcc
Confidence 44444444 3333334444444444444444443222 244455555555555552
Q ss_pred cccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCC
Q 041908 554 LNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSI 630 (883)
Q Consensus 554 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~ 630 (883)
+++..+..+.++++|++|++++|++++..|..+..+++|++|++++|++....+..+..+++|+.|++++|++++..
T Consensus 162 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 162 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 44333455666666666666666666666666666667777777777665322223344666777777777666443
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.3e-30 Score=307.85 Aligned_cols=249 Identities=13% Similarity=0.055 Sum_probs=112.3
Q ss_pred CCCCcEEeCCCCcCCCC----CCccccccCcccEEeccCCcccC----ccchhHhhCCCCCCEEEccCcccCCcCccccc
Q 041908 372 LPELVYLDMSQNSFEGS----IPPSMGYTVRLLFLDLSSNNFSG----ELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYM 443 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 443 (883)
+++|++|++++|.+++. ++.....+++|++|++++|.+++ .++ .++..+++|+.|++++|.+.+ ++..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 45555555555554433 22233344555555555555541 111 112344555555555554443 334444
Q ss_pred CCCCCCeEEccCcccC---ccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCC-ccccCCCc
Q 041908 444 SMTQLAWLYLNDNQFT---GRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQV 519 (883)
Q Consensus 444 ~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~ 519 (883)
.+++|++|+++..... +..+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 4555555555432211 12223344445555555555322 2444555555555555555555433222 22344555
Q ss_pred ccEEecCCCcCcCccccccccCCCcCeeeccc-----------Ccccccc-chhhhcCCCCCEEeccCCcCCccCCcccc
Q 041908 520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHN-----------NSLNGSI-PSALFQSSQLMTLDLRDNEFSGNIPPLIN 587 (883)
Q Consensus 520 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~~-p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~ 587 (883)
|+.|+++++...+.++.....+++|++|++++ |.+++.. +.....+++|++|+++.|++++..+..++
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 55555552211122222224445555555552 3343321 22233455555555555555554444443
Q ss_pred C-CCCCcEEEcc----CCccccc-----CchhhcCCCCCCEEEcCC
Q 041908 588 E-DSNLRALLLR----GNNLQGN-----IPQQLCHLRKIAIVDISY 623 (883)
Q Consensus 588 ~-l~~L~~L~L~----~N~l~g~-----~p~~l~~l~~L~~L~ls~ 623 (883)
. +++|+.|+++ .|.+++. ++..+..+++|+.|++++
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 3 5555555553 4444432 233344455555555543
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.9e-28 Score=265.33 Aligned_cols=226 Identities=19% Similarity=0.259 Sum_probs=159.9
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|++++|.+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l------------------- 139 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL------------------- 139 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-------------------
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-------------------
Confidence 45666666666665 45555555666666666666555 4555555555555555555544
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCcCCccCCccc---------cCCCCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLI---------NEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD 620 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l---------~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ 620 (883)
+ .+|..+.++++|++|++++|++.+.+|..+ ..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 140 -----~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 140 -----R-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212 (328)
T ss_dssp -----C-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE
T ss_pred -----c-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE
Confidence 4 444455555555555555555555555444 34788888888888887 7787888888888888
Q ss_pred cCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccc
Q 041908 621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES 700 (883)
Q Consensus 621 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (883)
+++|++++ +|..+..
T Consensus 213 L~~N~l~~-l~~~l~~---------------------------------------------------------------- 227 (328)
T 4fcg_A 213 IRNSPLSA-LGPAIHH---------------------------------------------------------------- 227 (328)
T ss_dssp EESSCCCC-CCGGGGG----------------------------------------------------------------
T ss_pred ccCCCCCc-Cchhhcc----------------------------------------------------------------
Confidence 88888874 4433321
Q ss_pred ccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908 701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY 780 (883)
Q Consensus 701 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~ 780 (883)
+++|+.|||++|++.+.+|..++.+++|++|+|++|++.+.+|..++++++|+.|||++|++.|.+|..+.++++
T Consensus 228 -----l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 228 -----LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp -----CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred -----CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 467788888888888888888888999999999998888889988999999999999999999999999999999
Q ss_pred CcEEEccCCcCcc
Q 041908 781 LAIFNVSYNDLSG 793 (883)
Q Consensus 781 L~~l~ls~N~l~g 793 (883)
|+.++++.|.+..
T Consensus 303 L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 303 NCIILVPPHLQAQ 315 (328)
T ss_dssp TCEEECCGGGSCC
T ss_pred ceEEeCCHHHHHH
Confidence 9998888765543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=3.4e-29 Score=274.92 Aligned_cols=281 Identities=17% Similarity=0.178 Sum_probs=235.5
Q ss_pred CCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908 444 SMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523 (883)
Q Consensus 444 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 523 (883)
.++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3445556777888877 4555443 589999999999987666689999999999999999998888889999999999
Q ss_pred ecCCCcCcCccccccccCCCcCeeecccCccccccch--hhhcCCCCCEEeccCC-cCCccCCccccCCCCCcEEEccCC
Q 041908 524 DISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS--ALFQSSQLMTLDLRDN-EFSGNIPPLINEDSNLRALLLRGN 600 (883)
Q Consensus 524 ~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~--~~~~~~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~N 600 (883)
++++|++++..+..+..+++|++|++++|++++ +|. .+..+++|++|++++| .+++..|..++.+++|++|++++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 999999998777778999999999999999984 554 7889999999999999 477777788999999999999999
Q ss_pred cccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCC
Q 041908 601 NLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGED 680 (883)
Q Consensus 601 ~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 680 (883)
++++..|..+..+++|+.|++++|+++ .+|..+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~--------------------------------------------- 218 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV--------------------------------------------- 218 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH---------------------------------------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccc-cchhhhh---------------------------------------------
Confidence 999999999999999999999999874 2222110
Q ss_pred hhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc---ccccCCeeeCCCCcCCc----CCCccccC
Q 041908 681 NRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG---YLQELHALNLSHNHLSG----SIPRSFSN 753 (883)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g----~ip~~l~~ 753 (883)
..+++|+.|||++|++++..+..+. ....++.++|++|.+++ .+|..++.
T Consensus 219 -----------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 219 -----------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp -----------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred -----------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 1156789999999999987665543 45678889999999887 47889999
Q ss_pred cCCCCEEECCCCcccccCCcc-ccCCCCCcEEEccCCcCcccCCCC
Q 041908 754 LKMIESMDLSYNKLRGQIPLE-LSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 754 l~~L~~LdLs~N~Lsg~ip~~-l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
+++|+.|||++|+++ .+|.. +.++++|++|++++|+++|.+|.-
T Consensus 276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred ccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence 999999999999999 56665 589999999999999999988843
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.8e-30 Score=301.05 Aligned_cols=407 Identities=15% Similarity=0.111 Sum_probs=203.5
Q ss_pred hhhcCCCCCCEEEccCCcC---CCCCCcccc------------CCCCCCEEEccCCccccccChhhhcC-CC-CCCEEec
Q 041908 173 ARICELKNLVELNLSWNKL---DGSLPQCLS------------NLTYLRVLDLTSNQLSGNLPISVFAN-LT-SLEYLSL 235 (883)
Q Consensus 173 ~~l~~l~~L~~L~Ls~n~l---~~~~p~~l~------------~l~~L~~L~Ls~n~l~~~ip~~~~~~-l~-~L~~L~L 235 (883)
..+..+++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+ ..+.. ++ +|++|++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL-DRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCCEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH-HHHHHhccccCcEEEC
Confidence 4456788899999988642 123443333 67888888888887775544 44544 33 4888888
Q ss_pred cCCc-CccccChHhhhcCCCCcEEEccCcccccCCCCC-----CCCccceEEEcccCcCC----ccCchhhhcCCCCCEE
Q 041908 236 SGNN-FQGSFSLSVLANHSRLEVLQISRLQIETENFPW-----LPRFQLKVLNLRRCNIS----GTIPSFLQYQYDLRYI 305 (883)
Q Consensus 236 ~~n~-l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-----~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L 305 (883)
++|. ++...-.....++++|++|++++|.+......+ ..+++|++|++++|.++ +.++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 8776 221111122346777777777777654332111 12234555555555544 1223333444555555
Q ss_pred EccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEEeCCCCcC
Q 041908 306 DLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSF 385 (883)
Q Consensus 306 ~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 385 (883)
++++|.+.+ +|..+ ..+++|+.|+++....... .+..+..+. .+++|+.|+++++..
T Consensus 226 ~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~--------------------~~~~~~~l~-~~~~L~~L~l~~~~~ 282 (592)
T 3ogk_B 226 KVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIG--------------------MPEKYMNLV-FPRKLCRLGLSYMGP 282 (592)
T ss_dssp ECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTT--------------------CTTSSSCCC-CCTTCCEEEETTCCT
T ss_pred eccCccHHH-HHHHH-hhhhHHHhhcccccccccc--------------------hHHHHHHhh-ccccccccCccccch
Confidence 555554442 33222 2444444444443111000 011122222 255666666665432
Q ss_pred CCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccC----------
Q 041908 386 EGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLND---------- 455 (883)
Q Consensus 386 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~---------- 455 (883)
+.+|..+..+++|++|++++|.+++.....++..+++|+.|+++++...+.++.....+++|++|++++
T Consensus 283 -~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 283 -NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp -TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred -hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 245555666666777777666655444434445666666666662222222222224456666666662
Q ss_pred -cccCcc-ccccccCCCCCCEEEccCCccCCCcchhhhC-CCCCCEEECC----CCcCCCC-----CCccccCCCcccEE
Q 041908 456 -NQFTGR-LEEGLLNAPSLHILDVSNNMLSGQLPHWVGN-FSNLDVLLMS----RNSLEGD-----VSVPLSNLQVARIL 523 (883)
Q Consensus 456 -n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L 523 (883)
+.+++. ++.....+++|++|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++..+.++++|+.|
T Consensus 362 ~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L 441 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441 (592)
T ss_dssp TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEE
Confidence 344432 1222334566666666666666555555544 6666666664 4444432 12223445555555
Q ss_pred ecCCCc--CcCcccccc-ccCCCcCeeecccCccccc-cchhhhcCCCCCEEeccCCcCCcc-CCccccCCCCCcEEEcc
Q 041908 524 DISENK--LYGPLEFSF-NHSSSLWHLFLHNNSLNGS-IPSALFQSSQLMTLDLRDNEFSGN-IPPLINEDSNLRALLLR 598 (883)
Q Consensus 524 ~Ls~n~--l~~~~~~~~-~~~~~L~~L~L~~n~l~~~-~p~~~~~~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~L~ 598 (883)
++++|. +++..+..+ ..+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++.....+++|++|+++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls 521 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQ 521 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECc
Confidence 554332 333333222 2244555555555555432 233344455555555555555433 22223345555555555
Q ss_pred CCcccc
Q 041908 599 GNNLQG 604 (883)
Q Consensus 599 ~N~l~g 604 (883)
+|++++
T Consensus 522 ~n~it~ 527 (592)
T 3ogk_B 522 GYRASM 527 (592)
T ss_dssp SCBCCT
T ss_pred CCcCCH
Confidence 555543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.8e-27 Score=268.77 Aligned_cols=250 Identities=20% Similarity=0.163 Sum_probs=177.1
Q ss_pred EEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCc
Q 041908 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS 553 (883)
Q Consensus 474 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 553 (883)
.++.++..++ .+|..+. +++++|++++|++++..+..|.++++|+.|++++|++++..+..|..+++|++|+|++|+
T Consensus 58 ~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 4444444444 3343222 355555555555555555555556666666666666655555556666666666666666
Q ss_pred cccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCc
Q 041908 554 LNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPS 632 (883)
Q Consensus 554 l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~ 632 (883)
+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|+..+.++ ..+..+++|+.|++++|++++. |.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc
Confidence 664444556666777777777777776555667777777777777744433444 3577788888888888877632 21
Q ss_pred ccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEE
Q 041908 633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGL 712 (883)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 712 (883)
+ ..+++|+.|
T Consensus 214 -~---------------------------------------------------------------------~~l~~L~~L 223 (452)
T 3zyi_A 214 -L---------------------------------------------------------------------TPLVGLEEL 223 (452)
T ss_dssp -C---------------------------------------------------------------------TTCTTCCEE
T ss_pred -c---------------------------------------------------------------------cccccccEE
Confidence 1 115678899
Q ss_pred EccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCc
Q 041908 713 DLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS 792 (883)
Q Consensus 713 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~ 792 (883)
||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+.|++++|++.
T Consensus 224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 99999999888999999999999999999999999999999999999999999999888888899999999999999998
Q ss_pred ccCCC
Q 041908 793 GPTPN 797 (883)
Q Consensus 793 g~ip~ 797 (883)
|.+..
T Consensus 304 CdC~~ 308 (452)
T 3zyi_A 304 CDCDI 308 (452)
T ss_dssp CSTTT
T ss_pred CCCCc
Confidence 87653
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.1e-27 Score=257.42 Aligned_cols=249 Identities=20% Similarity=0.189 Sum_probs=166.0
Q ss_pred cEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCc--CcccccCCCCCCeEEc
Q 041908 376 VYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQ--IFPKYMSMTQLAWLYL 453 (883)
Q Consensus 376 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 453 (883)
+.++.+++.++ .+|..+. ++|++|++++|.++ .+|..++..+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 34555555554 3443332 45666666666665 55555555566666666666665522 2344455667777777
Q ss_pred cCcccCccccccccCCCCCCEEEccCCccCCCcc-hhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908 454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP-HWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532 (883)
Q Consensus 454 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 532 (883)
++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 777766 345556677777777777777765443 467777777777777777777777777777777777777777765
Q ss_pred -ccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc
Q 041908 533 -PLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC 611 (883)
Q Consensus 533 -~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~ 611 (883)
..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 4566677777777777777777766666777777777777777777766666677777777777777777777777777
Q ss_pred CCC-CCCEEEcCCCcCCCC
Q 041908 612 HLR-KIAIVDISYNLLDGS 629 (883)
Q Consensus 612 ~l~-~L~~L~ls~N~l~~~ 629 (883)
.++ +|+.|++++|++++.
T Consensus 245 ~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCTTCCEEECTTCCEECS
T ss_pred hhhccCCEEEccCCCeecc
Confidence 663 677777777776543
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=266.79 Aligned_cols=251 Identities=22% Similarity=0.193 Sum_probs=186.1
Q ss_pred CEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccC
Q 041908 473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552 (883)
Q Consensus 473 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n 552 (883)
+.++.++..++ .+|..+. ++++.|++++|++++..+..|.++++|++|++++|.+.+..+..|..+++|++|+|++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 44555555554 4444332 45666666666666665666666666666666666666666666666677777777777
Q ss_pred ccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCC
Q 041908 553 SLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIP 631 (883)
Q Consensus 553 ~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p 631 (883)
++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|+..+.++ ..+..+++|+.|++++|+++ .+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc
Confidence 7765445566777777777777777776666677777788888887754444444 46778888888888888776 223
Q ss_pred cccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccE
Q 041908 632 SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG 711 (883)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 711 (883)
. + ..+++|+.
T Consensus 202 ~-~---------------------------------------------------------------------~~l~~L~~ 211 (440)
T 3zyj_A 202 N-L---------------------------------------------------------------------TPLIKLDE 211 (440)
T ss_dssp C-C---------------------------------------------------------------------TTCSSCCE
T ss_pred c-c---------------------------------------------------------------------CCCcccCE
Confidence 1 1 11567889
Q ss_pred EEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL 791 (883)
Q Consensus 712 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l 791 (883)
|||++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999988899999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred cccCCC
Q 041908 792 SGPTPN 797 (883)
Q Consensus 792 ~g~ip~ 797 (883)
.|.+..
T Consensus 292 ~CdC~l 297 (440)
T 3zyj_A 292 NCNCDI 297 (440)
T ss_dssp ECSSTT
T ss_pred cCCCCc
Confidence 887653
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=4.4e-29 Score=269.40 Aligned_cols=268 Identities=21% Similarity=0.194 Sum_probs=217.1
Q ss_pred CCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCC
Q 041908 448 LAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISE 527 (883)
Q Consensus 448 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 527 (883)
++..+++.+.+...+...+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4555666666665555556667788888888888887777888888888888888888876554 78888888999988
Q ss_pred CcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc
Q 041908 528 NKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP 607 (883)
Q Consensus 528 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p 607 (883)
|++++.. ..++|++|++++|++++..+.. +++|++|++++|++++..|..++.+++|++|++++|++++..|
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 8887543 2368999999999988665443 5789999999999998888888899999999999999998777
Q ss_pred hhhc-CCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcc
Q 041908 608 QQLC-HLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQ 686 (883)
Q Consensus 608 ~~l~-~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 686 (883)
..+. .+++|+.|++++|.+++. |..
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~~----------------------------------------------------- 187 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KGQ----------------------------------------------------- 187 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-ECC-----------------------------------------------------
T ss_pred HHHhhccCcCCEEECCCCcCccc-ccc-----------------------------------------------------
Confidence 7764 789999999999988642 110
Q ss_pred eeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCc
Q 041908 687 RVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK 766 (883)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 766 (883)
..+++|+.|||++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.||+++|+
T Consensus 188 -----------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 188 -----------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp -----------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCC
T ss_pred -----------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCC
Confidence 015678999999999995 4556999999999999999999 578889999999999999999
Q ss_pred cc-ccCCccccCCCCCcEEEcc-CCcCcccCCCC
Q 041908 767 LR-GQIPLELSELNYLAIFNVS-YNDLSGPTPNT 798 (883)
Q Consensus 767 Ls-g~ip~~l~~l~~L~~l~ls-~N~l~g~ip~~ 798 (883)
++ +.+|..+..+++|+.++++ .+.++|..|..
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 99 8888899999999999999 45677766543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.2e-28 Score=255.13 Aligned_cols=230 Identities=20% Similarity=0.168 Sum_probs=122.0
Q ss_pred CEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccC
Q 041908 473 HILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552 (883)
Q Consensus 473 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n 552 (883)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---------------- 74 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA---------------- 74 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT----------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh----------------
Confidence 45555555555 334322 34555555555555554444455555555555555555444444
Q ss_pred ccccccchhhhcCCCCCEEeccCCc-CCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCC
Q 041908 553 SLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIP 631 (883)
Q Consensus 553 ~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p 631 (883)
.+..+++|++|++++|+ +++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+
T Consensus 75 --------~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 75 --------AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp --------TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred --------hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 44444555555555554 443334445555555555555555554444555555555555555555543322
Q ss_pred cccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccE
Q 041908 632 SCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTG 711 (883)
Q Consensus 632 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 711 (883)
..+.. +++|+.
T Consensus 147 ~~~~~---------------------------------------------------------------------l~~L~~ 157 (285)
T 1ozn_A 147 DTFRD---------------------------------------------------------------------LGNLTH 157 (285)
T ss_dssp TTTTT---------------------------------------------------------------------CTTCCE
T ss_pred hHhcc---------------------------------------------------------------------CCCccE
Confidence 22211 344555
Q ss_pred EEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcC
Q 041908 712 LDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDL 791 (883)
Q Consensus 712 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l 791 (883)
|+|++|++++..+..+..+++|+.|+|++|.+++..|..|+++++|+.||+++|++++..|..+..+++|+.|++++|++
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 66666666544444556666666666666666665566666666666666666666655445556666666666666666
Q ss_pred cccCCCC
Q 041908 792 SGPTPNT 798 (883)
Q Consensus 792 ~g~ip~~ 798 (883)
.|.++..
T Consensus 238 ~c~~~~~ 244 (285)
T 1ozn_A 238 VCDCRAR 244 (285)
T ss_dssp ECSGGGH
T ss_pred cCCCCcH
Confidence 6555543
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.9e-29 Score=271.64 Aligned_cols=251 Identities=20% Similarity=0.231 Sum_probs=162.0
Q ss_pred cCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCcc-CCCcchhhh-------CCCCCCEEECCCCcCCCCCCccc
Q 041908 443 MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNML-SGQLPHWVG-------NFSNLDVLLMSRNSLEGDVSVPL 514 (883)
Q Consensus 443 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~l 514 (883)
+..++|+++++++|.+ .+|..+... |+.|++++|.+ .+.+|..+. ++++|++|++++|++++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666666 444433322 55555665555 223444333 44555555555555554444433
Q ss_pred cCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcC-----CCCCEEeccCCcCCccCCccccCC
Q 041908 515 SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQS-----SQLMTLDLRDNEFSGNIPPLINED 589 (883)
Q Consensus 515 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~-----~~L~~L~Ls~N~l~~~~p~~l~~l 589 (883)
.+..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..++.+
T Consensus 116 ----------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 116 ----------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp ----------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred ----------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 004555555555666655544 5555554 677777777777777666777777
Q ss_pred CCCcEEEccCCccccc--Cchhh--cCCCCCCEEEcCCCcCCCC--CCcccccccccccCCCCCCCcccccccccccccc
Q 041908 590 SNLRALLLRGNNLQGN--IPQQL--CHLRKIAIVDISYNLLDGS--IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPA 663 (883)
Q Consensus 590 ~~L~~L~L~~N~l~g~--~p~~l--~~l~~L~~L~ls~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (883)
++|++|++++|++.|. +|..+ ..+++|+.|++++|++++. ++..+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------------------------- 224 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---------------------------- 224 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH----------------------------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH----------------------------
Confidence 7888888888877665 23344 6778888888888877521 010000
Q ss_pred hhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCc-ccccccccCCeeeCCCCc
Q 041908 664 ISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIP-SAIGYLQELHALNLSHNH 742 (883)
Q Consensus 664 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~ 742 (883)
..+++|+.|||++|++++.+| ..+..+++|++|+|++|+
T Consensus 225 ----------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 225 ----------------------------------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp ----------------------------------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred ----------------------------------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 114677888888888887775 456677888888888888
Q ss_pred CCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908 743 LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793 (883)
Q Consensus 743 l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g 793 (883)
|+ .+|..+. ++|++|||++|++++. |. +..+++|++|++++|++++
T Consensus 265 l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 265 LK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 88 7777776 7888888888888876 55 7888888888888888876
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.3e-27 Score=253.89 Aligned_cols=253 Identities=20% Similarity=0.205 Sum_probs=181.1
Q ss_pred CeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCC
Q 041908 449 AWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISEN 528 (883)
Q Consensus 449 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 528 (883)
+.++.+++.++. +|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678899988884 45443 578999999999999877788999999999999999999888999999999999999999
Q ss_pred c-CcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc
Q 041908 529 K-LYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP 607 (883)
Q Consensus 529 ~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p 607 (883)
. +.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..+..++.+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 666556666666666666666666665555555555556666665555554444444455555555555554443222
Q ss_pred hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcce
Q 041908 608 QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQR 687 (883)
Q Consensus 608 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 687 (883)
..+..
T Consensus 171 ~~~~~--------------------------------------------------------------------------- 175 (285)
T 1ozn_A 171 RAFRG--------------------------------------------------------------------------- 175 (285)
T ss_dssp TTTTT---------------------------------------------------------------------------
T ss_pred HHhcC---------------------------------------------------------------------------
Confidence 22222
Q ss_pred eEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcc
Q 041908 688 VEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKL 767 (883)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~L 767 (883)
+++|+.|+|++|++++..|..++.+++|+.|+|++|++++..|..++.+++|+.|++++|++
T Consensus 176 ------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 176 ------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp ------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred ------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 34566777777777777788888888888888888888877777788888888888888888
Q ss_pred cccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 768 RGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 768 sg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
++..+.. .-...++.+..+.|.+.|..|..
T Consensus 238 ~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 238 VCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp ECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred cCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 7655432 11133455567788888888864
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=9.8e-29 Score=266.02 Aligned_cols=253 Identities=20% Similarity=0.199 Sum_probs=179.0
Q ss_pred hhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccC-cccccccc-------CCCCCCEEEccCCccCCCcchh
Q 041908 418 LTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFT-GRLEEGLL-------NAPSLHILDVSNNMLSGQLPHW 489 (883)
Q Consensus 418 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~ls~n~l~~~~p~~ 489 (883)
+.+.++|+.+++++|.+ .+|..+... |+.|++++|++. ..+|..+. .+++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34567899999999999 667766544 999999999994 55666555 7899999999999999999987
Q ss_pred h--hCCCCCCEEECCCCcCCCCCCccccCC-----CcccEEecCCCcCcCccccccccCCCcCeeecccCcccccc--ch
Q 041908 490 V--GNFSNLDVLLMSRNSLEGDVSVPLSNL-----QVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI--PS 560 (883)
Q Consensus 490 ~--~~l~~L~~L~L~~n~l~~~~~~~l~~l-----~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~--p~ 560 (883)
+ ..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..+..+..+++|++|++++|++.+.+ |.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8899999999999999987 7666655 56666666666665555555555555555555555554331 22
Q ss_pred hhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccc--cCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908 561 ALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG--NIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNI 637 (883)
Q Consensus 561 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 637 (883)
.+ .++.+++|++|++++|++++ .++ ..+..+++|+.||+++|++++.+|....
T Consensus 194 ~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 249 (312)
T 1wwl_A 194 AL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC-- 249 (312)
T ss_dssp HS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC--
T ss_pred HH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh--
Confidence 22 11455556666666665552 222 2335667777777777777765542110
Q ss_pred cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN 717 (883)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 717 (883)
..+++|+.|||++|
T Consensus 250 ------------------------------------------------------------------~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 250 ------------------------------------------------------------------DWPSQLNSLNLSFT 263 (312)
T ss_dssp ------------------------------------------------------------------CCCTTCCEEECTTS
T ss_pred ------------------------------------------------------------------hhcCCCCEEECCCC
Confidence 01456788888888
Q ss_pred cCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908 718 ELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770 (883)
Q Consensus 718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ 770 (883)
+|+ .+|..+. ++|++|+|++|+|++. |. +..+++|+.|||++|++++.
T Consensus 264 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 264 GLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred ccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 888 7777776 7888888888888866 65 88888888889988888753
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7.8e-28 Score=274.70 Aligned_cols=236 Identities=22% Similarity=0.202 Sum_probs=174.0
Q ss_pred CCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeee
Q 041908 469 APSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLF 548 (883)
Q Consensus 469 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 548 (883)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3467777777777777667777777777777777777776554 7777777777777777765433 25778888
Q ss_pred cccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc-CCCCCCEEEcCCCcCC
Q 041908 549 LHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC-HLRKIAIVDISYNLLD 627 (883)
Q Consensus 549 L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~-~l~~L~~L~ls~N~l~ 627 (883)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|++|+|++|.+++.+|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888887765543 346788888888888877777788888888888888888877777775 6788888888888776
Q ss_pred CCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccc
Q 041908 628 GSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLE 707 (883)
Q Consensus 628 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 707 (883)
+..+. ..++
T Consensus 183 ~~~~~-----------------------------------------------------------------------~~l~ 191 (487)
T 3oja_A 183 DVKGQ-----------------------------------------------------------------------VVFA 191 (487)
T ss_dssp EEECC-----------------------------------------------------------------------CCCT
T ss_pred ccccc-----------------------------------------------------------------------ccCC
Confidence 43111 0145
Q ss_pred cccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc-ccCCccccCCCCCcEEEc
Q 041908 708 YMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR-GQIPLELSELNYLAIFNV 786 (883)
Q Consensus 708 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls-g~ip~~l~~l~~L~~l~l 786 (883)
+|+.|||++|+|++.+| .++.+++|+.|+|++|.+++ +|..++.+++|+.||+++|.++ +.+|..+..++.|+.+++
T Consensus 192 ~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 192 KLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp TCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 67788888888886444 47788888888888888885 6777888888888888888887 667777777777777777
Q ss_pred c
Q 041908 787 S 787 (883)
Q Consensus 787 s 787 (883)
+
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 5
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=258.99 Aligned_cols=229 Identities=26% Similarity=0.263 Sum_probs=137.8
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34455555555554444444555555555555555555444444555555555555555555444444555555555555
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCc-CCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG 628 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~ 628 (883)
++|++++..+..|.++++|++|++++|+ +....+..+.++++|++|++++|+++ .+| .+..+++|+.|++++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 5555554444455555666666666533 33222334566666666666666665 344 35666677777777776665
Q ss_pred CCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccc
Q 041908 629 SIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY 708 (883)
Q Consensus 629 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 708 (883)
..|..|.. +++
T Consensus 222 ~~~~~~~~---------------------------------------------------------------------l~~ 232 (440)
T 3zyj_A 222 IRPGSFQG---------------------------------------------------------------------LMH 232 (440)
T ss_dssp ECTTTTTT---------------------------------------------------------------------CTT
T ss_pred cChhhhcc---------------------------------------------------------------------Ccc
Confidence 54544322 356
Q ss_pred ccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908 709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769 (883)
Q Consensus 709 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg 769 (883)
|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 6777777777777777777888888888888888887777777888888888888887753
No 66
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.1e-26 Score=260.16 Aligned_cols=229 Identities=23% Similarity=0.235 Sum_probs=141.5
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
+++++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555555444555555555555555555555555555555555555555555555544445555555555555
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCc-CCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG 628 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~ 628 (883)
++|++++..+..|.++++|+.|++++|+ +....+..+..+++|++|++++|++++ +| .+..+++|+.|++++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcc
Confidence 5555554444455566666666666533 332223345666666666666666663 33 35666677777777777665
Q ss_pred CCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccc
Q 041908 629 SIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEY 708 (883)
Q Consensus 629 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 708 (883)
..|..|.. +++
T Consensus 233 ~~~~~~~~---------------------------------------------------------------------l~~ 243 (452)
T 3zyi_A 233 IRPGSFHG---------------------------------------------------------------------LSS 243 (452)
T ss_dssp ECGGGGTT---------------------------------------------------------------------CTT
T ss_pred cCcccccC---------------------------------------------------------------------ccC
Confidence 54544322 356
Q ss_pred ccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908 709 MTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769 (883)
Q Consensus 709 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg 769 (883)
|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 244 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 6777788888877777778888888888888888887777777888888888888887764
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=4.9e-26 Score=264.84 Aligned_cols=268 Identities=26% Similarity=0.337 Sum_probs=154.6
Q ss_pred CCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEc
Q 041908 374 ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL 453 (883)
Q Consensus 374 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 453 (883)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~----------------- 95 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS----------------- 95 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-----------------
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-----------------
Confidence 5777777777776 5565554 56777777777666 4554 24455555555554442
Q ss_pred cCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc
Q 041908 454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533 (883)
Q Consensus 454 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 533 (883)
+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|.. +++|++|++++|++++.
T Consensus 96 --------lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l 156 (622)
T 3g06_A 96 --------LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL 156 (622)
T ss_dssp --------CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC
T ss_pred --------CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc
Confidence 222 33445555555555543 222 34455555555555553 2221 25555566665555442
Q ss_pred cccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCC
Q 041908 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL 613 (883)
Q Consensus 534 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l 613 (883)
|. .+.+|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. .++|+.|++++|.++ .+|.. +
T Consensus 157 -~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~ 220 (622)
T 3g06_A 157 -PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---P 220 (622)
T ss_dssp -CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---C
T ss_pred -CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---C
Confidence 21 23456666666666653 44 334667777777777664 4432 356677777777666 34432 3
Q ss_pred CCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEe
Q 041908 614 RKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFM 693 (883)
Q Consensus 614 ~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 693 (883)
++|+.|++++|++++ +|..
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~~------------------------------------------------------------ 239 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPVL------------------------------------------------------------ 239 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC------------------------------------------------------------
T ss_pred CCCCEEEccCCccCc-CCCC------------------------------------------------------------
Confidence 566677777776653 2210
Q ss_pred eccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCc
Q 041908 694 AKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPL 773 (883)
Q Consensus 694 ~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~ 773 (883)
+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..++++++|+.|||++|++++.+|.
T Consensus 240 ------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 240 ------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 245666777777776 4554 4566777777777777 5666777777777777777777777766
Q ss_pred cccCCC
Q 041908 774 ELSELN 779 (883)
Q Consensus 774 ~l~~l~ 779 (883)
.+..++
T Consensus 303 ~l~~L~ 308 (622)
T 3g06_A 303 ALREIT 308 (622)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 655443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.8e-25 Score=258.44 Aligned_cols=263 Identities=27% Similarity=0.273 Sum_probs=210.8
Q ss_pred CCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECC
Q 041908 423 SLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMS 502 (883)
Q Consensus 423 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 502 (883)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4556666666655 3344333 678888888888874 444 4689999999999998 4665 67999999999
Q ss_pred CCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccC
Q 041908 503 RNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNI 582 (883)
Q Consensus 503 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~ 582 (883)
+|++++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++|++++ +
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 9999864 33 56889999999999987 4432 4799999999999984 554 34789999999999995 6
Q ss_pred CccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccccccccccccc
Q 041908 583 PPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFP 662 (883)
Q Consensus 583 p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (883)
| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++. +|..
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~----------------------------- 219 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL----------------------------- 219 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC-----------------------------
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC-----------------------------
Confidence 6 457899999999999985 5543 4789999999998863 3221
Q ss_pred chhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCc
Q 041908 663 AISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNH 742 (883)
Q Consensus 663 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 742 (883)
+++|+.|+|++|+|++ +| ..+++|+.|+|++|+
T Consensus 220 -------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 220 -------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNR 252 (622)
T ss_dssp -------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSC
T ss_pred -------------------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCC
Confidence 3568999999999995 77 456889999999999
Q ss_pred CCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 743 LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 743 l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|..
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 99 5666 6789999999999999 78999999999999999999999988864
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4.4e-27 Score=253.75 Aligned_cols=269 Identities=20% Similarity=0.186 Sum_probs=157.3
Q ss_pred ccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEcc
Q 041908 399 LLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVS 478 (883)
Q Consensus 399 L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 478 (883)
++..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444555555554 4444455555666666666666666555566666666666666666665443 6666677777777
Q ss_pred CCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCcccccc
Q 041908 479 NNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSI 558 (883)
Q Consensus 479 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 558 (883)
+|.+++. + ..++|++|++++|++++..+. .+++|+.|++++|++++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 7766532 2 235666666666666644332 2345566666666665555555555555555555555555444
Q ss_pred chhhh-cCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccc
Q 041908 559 PSALF-QSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNI 637 (883)
Q Consensus 559 p~~~~-~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 637 (883)
+..+. .+++|++|++++|++++. | . ...+++|+.|++++|++++. |..+.
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~------------------------~-~~~l~~L~~L~Ls~N~l~~l-~~~~~-- 211 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K------------------------G-QVVFAKLKTLDLSSNKLAFM-GPEFQ-- 211 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E------------------------C-CCCCTTCCEEECCSSCCCEE-CGGGG--
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c------------------------c-ccccccCCEEECCCCcCCcc-hhhhc--
Confidence 44432 445555555555555432 1 1 11245555555555555422 11111
Q ss_pred cccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCC
Q 041908 638 WPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSN 717 (883)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 717 (883)
.+++|+.|||++|
T Consensus 212 -------------------------------------------------------------------~l~~L~~L~L~~N 224 (317)
T 3o53_A 212 -------------------------------------------------------------------SAAGVTWISLRNN 224 (317)
T ss_dssp -------------------------------------------------------------------GGTTCSEEECTTS
T ss_pred -------------------------------------------------------------------ccCcccEEECcCC
Confidence 1345666777777
Q ss_pred cCcccCcccccccccCCeeeCCCCcCC-cCCCccccCcCCCCEEECC-CCcccccCCccc
Q 041908 718 ELTGEIPSAIGYLQELHALNLSHNHLS-GSIPRSFSNLKMIESMDLS-YNKLRGQIPLEL 775 (883)
Q Consensus 718 ~l~g~ip~~l~~l~~L~~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs-~N~Lsg~ip~~l 775 (883)
+++ .+|..+..+++|+.|+|++|.++ +.+|..++.++.|+.|+++ .+.++|..|...
T Consensus 225 ~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~ 283 (317)
T 3o53_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC 283 (317)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred ccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence 776 46666777777777788877777 6677777777778888877 456677666543
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=2.4e-28 Score=288.39 Aligned_cols=232 Identities=17% Similarity=0.117 Sum_probs=100.4
Q ss_pred hhhcCCCCCEEEccCCCCcCCc---c-----------hHHHhcCCCCcEEEccccccccccc--CCCCCCCccEEEccCC
Q 041908 295 FLQYQYDLRYIDLSHNNLAGTF---P-----------TWLLQNNTKLEFLFLFNNFLKGLLH--LPDSKRDLLHLVISNN 358 (883)
Q Consensus 295 ~l~~l~~L~~L~Ls~n~l~~~~---p-----------~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~L~~L~ls~n 358 (883)
.+..+++|++|+++++.....+ | ..+...+++|++|++++|.+++... +...+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 4455666666666665421111 1 1122345555555555555443211 1113455555555555
Q ss_pred -ccccccchhhhcCCCCCcEEeCCCCcCCCCCCcccc----ccCcccEEeccCCc--ccCccchhHhhCCCCCCEEEccC
Q 041908 359 -NFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMG----YTVRLLFLDLSSNN--FSGELPKQFLTGCVSLAFMNVSH 431 (883)
Q Consensus 359 -~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~ip~~~~~~l~~L~~L~Ls~ 431 (883)
.+.......+...+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 222221222222256666666666665543333222 34466666666654 11111112223345555555555
Q ss_pred cccCCcCcccccCCCCCCeEEccCc-------ccCccccccccCCCCCCEE-EccCCccCCCcchhhhCCCCCCEEECCC
Q 041908 432 NYFGGQIFPKYMSMTQLAWLYLNDN-------QFTGRLEEGLLNAPSLHIL-DVSNNMLSGQLPHWVGNFSNLDVLLMSR 503 (883)
Q Consensus 432 n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L-~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 503 (883)
|...+.++..+..+++|++|++..+ .+.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 5211113444445555555553332 2222 22244455555555 2222211 12333333445555555555
Q ss_pred CcCCCCCC-ccccCCCcccEEecCCC
Q 041908 504 NSLEGDVS-VPLSNLQVARILDISEN 528 (883)
Q Consensus 504 n~l~~~~~-~~l~~l~~L~~L~Ls~n 528 (883)
|.+++... ..+..+++|+.|++++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 55432211 11234455555555544
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.8e-28 Score=284.09 Aligned_cols=429 Identities=15% Similarity=0.087 Sum_probs=258.7
Q ss_pred hhcCCCCCCEEEccCCcCCC---CCCc------------cccCCCCCCEEEccCCccccccChhhhc-CCCCCCEEeccC
Q 041908 174 RICELKNLVELNLSWNKLDG---SLPQ------------CLSNLTYLRVLDLTSNQLSGNLPISVFA-NLTSLEYLSLSG 237 (883)
Q Consensus 174 ~l~~l~~L~~L~Ls~n~l~~---~~p~------------~l~~l~~L~~L~Ls~n~l~~~ip~~~~~-~l~~L~~L~L~~ 237 (883)
.+..+++|++|+++++.... ..|. ....+++|++|++++|.+++..+ ..+. .+++|++|++++
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL-ELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHCTTCCEEEEES
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH-HHHHHhCCCCcEEeCCC
Confidence 45667888999888875321 1111 12357788888888888776555 3443 688888888888
Q ss_pred C-cCccccChHhhhcCCCCcEEEccCcccccCCCC-----CCCCccceEEEcccCc--CCcc-CchhhhcCCCCCEEEcc
Q 041908 238 N-NFQGSFSLSVLANHSRLEVLQISRLQIETENFP-----WLPRFQLKVLNLRRCN--ISGT-IPSFLQYQYDLRYIDLS 308 (883)
Q Consensus 238 n-~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-----~~~~~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls 308 (883)
| .++.........++++|++|++++|.+...... ...+++|++|++++|. +... ++.....+++|++|+++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence 8 444222223445788888888888776543321 1134467777777665 2211 12223445677777777
Q ss_pred CCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcCCCCCcEE-eCCCCcCCC
Q 041908 309 HNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMILPELVYL-DMSQNSFEG 387 (883)
Q Consensus 309 ~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~l~~L~~L-~L~~n~l~~ 387 (883)
+|...+.+|..+ ..+++|+.|+++.+.. ++..+.+.+ ++..+. .+++|+.| .+.+... +
T Consensus 220 ~~~~~~~l~~~~-~~~~~L~~L~l~~~~~----------------~~~~~~~~~-l~~~l~-~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 220 RAVPLEKLATLL-QRAPQLEELGTGGYTA----------------EVRPDVYSG-LSVALS-GCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp TTSCHHHHHHHH-HHCTTCSEEECSBCCC----------------CCCHHHHHH-HHHHHH-TCTTCCEEECCBTCCG-G
T ss_pred CCCcHHHHHHHH-hcCCcceEcccccccC----------------ccchhhHHH-HHHHHh-cCCCcccccCCcccch-h
Confidence 663222344433 3566666666544321 012222222 333443 36777777 3433322 2
Q ss_pred CCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcc-cccCCCCCCeEEccC---------cc
Q 041908 388 SIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFP-KYMSMTQLAWLYLND---------NQ 457 (883)
Q Consensus 388 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~---------n~ 457 (883)
.++..+..+++|++|++++|.+++.....+...+++|++|++++| +...... ....+++|++|++.+ +.
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 445455566777777777777664444444557777777777776 3322111 223467777777733 34
Q ss_pred cCcccccccc-CCCCCCEEEccCCccCCCcchhhh-CCCCCCEEECC--C----CcCCCCC-----CccccCCCcccEEe
Q 041908 458 FTGRLEEGLL-NAPSLHILDVSNNMLSGQLPHWVG-NFSNLDVLLMS--R----NSLEGDV-----SVPLSNLQVARILD 524 (883)
Q Consensus 458 l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~L~--~----n~l~~~~-----~~~l~~l~~L~~L~ 524 (883)
+++.....+. .+++|++|+++.|.+++..+..+. .+++|++|+++ + +.+++.. +..+..+++|+.|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 4433222232 378888888888888765555554 47888888888 3 4454221 11255678888888
Q ss_pred cCCCcCcCcccccccc-CCCcCeeecccCccccccchhh-hcCCCCCEEeccCCcCCccCCc-cccCCCCCcEEEccCCc
Q 041908 525 ISENKLYGPLEFSFNH-SSSLWHLFLHNNSLNGSIPSAL-FQSSQLMTLDLRDNEFSGNIPP-LINEDSNLRALLLRGNN 601 (883)
Q Consensus 525 Ls~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~p~~~-~~~~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~N~ 601 (883)
+++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+
T Consensus 439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 876 565555444544 7788889998888876655555 6688899999999888654433 44557888999999888
Q ss_pred ccccCchhh-cCCCCCCEEEcCCCc
Q 041908 602 LQGNIPQQL-CHLRKIAIVDISYNL 625 (883)
Q Consensus 602 l~g~~p~~l-~~l~~L~~L~ls~N~ 625 (883)
++......+ ..++.|+...+..+.
T Consensus 518 ~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 518 VSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp CBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCC
Confidence 864434444 456777666665543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-25 Score=256.37 Aligned_cols=230 Identities=21% Similarity=0.209 Sum_probs=198.7
Q ss_pred CcchhhhCC----CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccch
Q 041908 485 QLPHWVGNF----SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPS 560 (883)
Q Consensus 485 ~~p~~~~~l----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 560 (883)
.+|..+..+ ++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|+.|+|++|.+++..+
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 345555554 489999999999999989999999999999999999998776 8899999999999999985432
Q ss_pred hhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccccccc
Q 041908 561 ALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPW 640 (883)
Q Consensus 561 ~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~ 640 (883)
.++|+.|++++|.+++..+. .+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---- 166 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---- 166 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----
T ss_pred ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----
Confidence 38999999999999987654 4588999999999999999999999999999999999998876655421
Q ss_pred ccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc
Q 041908 641 MEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT 720 (883)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 720 (883)
.+++|+.|||++|.|+
T Consensus 167 ----------------------------------------------------------------~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 167 ----------------------------------------------------------------SSDTLEHLNLQYNFIY 182 (487)
T ss_dssp ----------------------------------------------------------------GTTTCCEEECTTSCCC
T ss_pred ----------------------------------------------------------------hCCcccEEecCCCccc
Confidence 1568899999999999
Q ss_pred ccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCc-ccCC
Q 041908 721 GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLS-GPTP 796 (883)
Q Consensus 721 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~-g~ip 796 (883)
+..+ +..+++|+.|+|++|.+++.+| .++.+++|+.|||++|++++ +|..+..+++|+.|++++|++. +.+|
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 7633 4469999999999999997555 59999999999999999996 7888999999999999999998 4443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6.7e-25 Score=231.85 Aligned_cols=211 Identities=24% Similarity=0.246 Sum_probs=141.2
Q ss_pred cccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEcc
Q 041908 519 VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLR 598 (883)
Q Consensus 519 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 598 (883)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34455555555544444444555555555555555554444455556666666666666665555666666666666666
Q ss_pred CCcccccCchhhcCCCCCCEEEcCCCcCCCC-CCcccccccccccCCCCCCCcccccccccccccchhhhcccccccccc
Q 041908 599 GNNLQGNIPQQLCHLRKIAIVDISYNLLDGS-IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFS 677 (883)
Q Consensus 599 ~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 677 (883)
+|++.+..+..+..+++|+.|++++|++++. +|..+..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 6666655555566666777777777766542 3443322
Q ss_pred CCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCC----eeeCCCCcCCcCCCccccC
Q 041908 678 GEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELH----ALNLSHNHLSGSIPRSFSN 753 (883)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~----~L~Ls~N~l~g~ip~~l~~ 753 (883)
+++|+.|||++|++++..+..+..++.|+ .|++++|.+++..+..+..
T Consensus 148 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~ 199 (276)
T 2z62_A 148 ----------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (276)
T ss_dssp ----------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred ----------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence 45677788888888777777777777776 7888999988666655544
Q ss_pred cCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908 754 LKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK 799 (883)
Q Consensus 754 l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~ 799 (883)
.+|+.|||++|++++..+..+..+++|+.|++++|+++|.+|.-.
T Consensus 200 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~ 244 (276)
T 2z62_A 200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 244 (276)
T ss_dssp -CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred -CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchH
Confidence 479999999999997777778889999999999999999888653
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=3.5e-24 Score=226.33 Aligned_cols=212 Identities=21% Similarity=0.198 Sum_probs=157.5
Q ss_pred CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEec
Q 041908 494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL 573 (883)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L 573 (883)
++|++|++++|++++..+..+.++++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555556666666666666666666655556667777777777777777666667777888888888
Q ss_pred cCCcCCccCCccccCCCCCcEEEccCCcccc-cCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCccc
Q 041908 574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQG-NIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVF 652 (883)
Q Consensus 574 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~ 652 (883)
++|++++..+..++.+++|++|++++|++++ .+|..+..+++|+.|++++|++++..+..+..+.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------------- 173 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------------- 173 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH--------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh--------------
Confidence 8888887666678888888888888888876 3688888888888888888888765444433210
Q ss_pred ccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccccccccc-EEEccCCcCcccCcccccccc
Q 041908 653 GYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMT-GLDLSSNELTGEIPSAIGYLQ 731 (883)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~g~ip~~l~~l~ 731 (883)
.++.+. .||+++|++++..+..+. ..
T Consensus 174 ----------------------------------------------------~L~~l~l~L~ls~n~l~~~~~~~~~-~~ 200 (276)
T 2z62_A 174 ----------------------------------------------------QMPLLNLSLDLSLNPMNFIQPGAFK-EI 200 (276)
T ss_dssp ----------------------------------------------------TCTTCCEEEECCSSCCCEECTTSSC-SC
T ss_pred ----------------------------------------------------hccccceeeecCCCcccccCccccC-CC
Confidence 022233 799999999966665554 45
Q ss_pred cCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908 732 ELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP 772 (883)
Q Consensus 732 ~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip 772 (883)
+|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 89999999999998877788999999999999999997654
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.9e-23 Score=219.68 Aligned_cols=216 Identities=25% Similarity=0.295 Sum_probs=159.4
Q ss_pred CCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEE
Q 041908 64 SDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143 (883)
Q Consensus 64 ~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L 143 (883)
.++|.|.|+.|.... ..++++++++.+.. +|..+. +.|++|+|++|++.. +|...+.++++|++|
T Consensus 2 ~~~C~~~~~~C~c~~----------~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L 66 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN----------NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSS--LPSKAFHRLTKLRLL 66 (270)
T ss_dssp CCCBGGGTCSBEEET----------TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSC--CCTTSSSSCTTCCEE
T ss_pred CccCCCCCCCCEeCC----------CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCe--eCHHHhcCCCCCCEE
Confidence 479999999996432 46889999999886 565554 689999999999987 666789999999999
Q ss_pred ECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhh
Q 041908 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISV 223 (883)
Q Consensus 144 ~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~ 223 (883)
++++|.+.+..+ ..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|...
T Consensus 67 ~l~~n~l~~i~~-----------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 128 (270)
T 2o6q_A 67 YLNDNKLQTLPA-----------------GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRV 128 (270)
T ss_dssp ECCSSCCSCCCT-----------------TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTT
T ss_pred ECCCCccCeeCh-----------------hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHH
Confidence 999998875443 45678999999999999999777777899999999999999999 555477
Q ss_pred hcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCC-CCCCccceEEEcccCcCCccCchhhhcCCCC
Q 041908 224 FANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFP-WLPRFQLKVLNLRRCNISGTIPSFLQYQYDL 302 (883)
Q Consensus 224 ~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 302 (883)
|+++++|++|++++|.++ .++...+..+++|++|++++|.+...... +..+++|++|++++|.+++..+..+..+++|
T Consensus 129 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 899999999999999988 45656677777777777766665544332 2233445555555555444444444444455
Q ss_pred CEEEccCCCCc
Q 041908 303 RYIDLSHNNLA 313 (883)
Q Consensus 303 ~~L~Ls~n~l~ 313 (883)
++|++++|.+.
T Consensus 208 ~~L~l~~N~~~ 218 (270)
T 2o6q_A 208 KMLQLQENPWD 218 (270)
T ss_dssp CEEECCSSCBC
T ss_pred CEEEecCCCee
Confidence 55555554443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=2.9e-23 Score=218.27 Aligned_cols=186 Identities=24% Similarity=0.258 Sum_probs=141.7
Q ss_pred CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcC
Q 041908 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS 622 (883)
Q Consensus 543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls 622 (883)
++++|++++|++++..+..|.++++|++|++++|+++...+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 55666666666654444456666677777777777665444555667777777777777776555666777777777777
Q ss_pred CCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccc
Q 041908 623 YNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK 702 (883)
Q Consensus 623 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (883)
+|++++..|..|..
T Consensus 118 ~n~l~~~~~~~~~~------------------------------------------------------------------ 131 (270)
T 2o6q_A 118 RNQLKSLPPRVFDS------------------------------------------------------------------ 131 (270)
T ss_dssp SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCccCeeCHHHhCc------------------------------------------------------------------
Confidence 77776554443322
Q ss_pred ccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCc
Q 041908 703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLA 782 (883)
Q Consensus 703 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~ 782 (883)
+++|+.|+|++|++++..+..|+.+++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+
T Consensus 132 ---l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 132 ---LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 46788899999998866666788999999999999999988888899999999999999999987777889999999
Q ss_pred EEEccCCcCcccCCC
Q 041908 783 IFNVSYNDLSGPTPN 797 (883)
Q Consensus 783 ~l~ls~N~l~g~ip~ 797 (883)
.|++++|++.|.++.
T Consensus 209 ~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 209 MLQLQENPWDCTCNG 223 (270)
T ss_dssp EEECCSSCBCCSSSS
T ss_pred EEEecCCCeeCCCcc
Confidence 999999999998764
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=9.1e-24 Score=222.35 Aligned_cols=180 Identities=26% Similarity=0.271 Sum_probs=127.3
Q ss_pred CCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEE
Q 041908 541 SSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVD 620 (883)
Q Consensus 541 ~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ 620 (883)
+++|++|++++|.+++ + +.+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|+
T Consensus 62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 3344444444444432 1 2445556666666666666655555566666666666666666655555566677777777
Q ss_pred cCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccc
Q 041908 621 ISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYES 700 (883)
Q Consensus 621 ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (883)
+++|++++..|..+..
T Consensus 140 L~~n~l~~~~~~~~~~---------------------------------------------------------------- 155 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDK---------------------------------------------------------------- 155 (272)
T ss_dssp CCSSCCCCCCTTTTTT----------------------------------------------------------------
T ss_pred CCCCccCccCHHHhcc----------------------------------------------------------------
Confidence 7777766544433221
Q ss_pred ccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCC
Q 041908 701 YKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNY 780 (883)
Q Consensus 701 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~ 780 (883)
+++|+.|+|++|++++..|..++.+++|++|+|++|++++.+|..++.+++|+.|+|++|++++..| .
T Consensus 156 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~ 223 (272)
T 3rfs_A 156 -----LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------G 223 (272)
T ss_dssp -----CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------T
T ss_pred -----CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------H
Confidence 4567888888888887777778889999999999999998888888999999999999999987654 6
Q ss_pred CcEEEccCCcCcccCCCC
Q 041908 781 LAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 781 L~~l~ls~N~l~g~ip~~ 798 (883)
|+.+++++|.++|.+|..
T Consensus 224 l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp THHHHHHHHHTGGGBBCT
T ss_pred HHHHHHHHHhCCCcccCc
Confidence 888999999999999965
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.7e-23 Score=220.23 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=70.6
Q ss_pred hCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCE
Q 041908 491 GNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT 570 (883)
Q Consensus 491 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 570 (883)
..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3445555555555555421 1244555555555555555442 24445555555555555555444444555555555
Q ss_pred EeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCC
Q 041908 571 LDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGS 629 (883)
Q Consensus 571 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~ 629 (883)
|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 55555555544444455555555555555555544444455555555555555555543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=7.4e-23 Score=217.06 Aligned_cols=205 Identities=21% Similarity=0.198 Sum_probs=145.0
Q ss_pred cCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcE
Q 041908 515 SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRA 594 (883)
Q Consensus 515 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 594 (883)
.++++++.+++++|.++. +|..+ .++++.|++++|.+++..|..+..+++|+.|++++|++++..+ . +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCE
Confidence 344445555555555443 22222 1356666666666665556666666777777777777664322 2 56677777
Q ss_pred EEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccc
Q 041908 595 LLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNL 674 (883)
Q Consensus 595 L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 674 (883)
|++++|+++ .+|..+..+++|+.|++++|++++..|..|..
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 777777776 56777777777788888888777554444322
Q ss_pred cccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCc
Q 041908 675 IFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNL 754 (883)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l 754 (883)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+
T Consensus 123 -------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 123 -------------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp -------------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred -------------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 4567888888888887767778888899999999999987767777889
Q ss_pred CCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccC
Q 041908 755 KMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPT 795 (883)
Q Consensus 755 ~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~i 795 (883)
++|+.|+|++|+++ .+|..+..+..|+.+++++|++.|.+
T Consensus 172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 99999999999998 67888888888999999999988765
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.3e-24 Score=238.98 Aligned_cols=178 Identities=24% Similarity=0.188 Sum_probs=97.6
Q ss_pred eEEccCcccCccccccccCCCCCCEEEccCCccCCCcc----hhhhCCC-CCCEEECCCCcCCCCCCccccCC-----Cc
Q 041908 450 WLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLP----HWVGNFS-NLDVLLMSRNSLEGDVSVPLSNL-----QV 519 (883)
Q Consensus 450 ~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~~ 519 (883)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35667777777777666666667777777777766555 5566666 67777777777766655555543 66
Q ss_pred ccEEecCCCcCcCccccccc----cC-CCcCeeecccCccccccchhhhc-----CCCCCEEeccCCcCCccCC----cc
Q 041908 520 ARILDISENKLYGPLEFSFN----HS-SSLWHLFLHNNSLNGSIPSALFQ-----SSQLMTLDLRDNEFSGNIP----PL 585 (883)
Q Consensus 520 L~~L~Ls~n~l~~~~~~~~~----~~-~~L~~L~L~~n~l~~~~p~~~~~-----~~~L~~L~Ls~N~l~~~~p----~~ 585 (883)
|++|++++|++++..+..+. .+ ++|++|++++|++++..+..+.. +++|++|+|++|++++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 66666666666554444322 22 45566666666555444433322 2455555555555553222 22
Q ss_pred ccCCC-CCcEEEccCCcccccCchhhc----CC-CCCCEEEcCCCcCC
Q 041908 586 INEDS-NLRALLLRGNNLQGNIPQQLC----HL-RKIAIVDISYNLLD 627 (883)
Q Consensus 586 l~~l~-~L~~L~L~~N~l~g~~p~~l~----~l-~~L~~L~ls~N~l~ 627 (883)
+..++ +|++|+|++|++++..+..++ .+ ++|+.||+++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 22332 555555555555544433222 22 34555555555443
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.5e-24 Score=238.60 Aligned_cols=183 Identities=21% Similarity=0.206 Sum_probs=96.6
Q ss_pred CCCeEEccCcccCcccc----ccccCCC-CCCEEEccCCccCCCcchhhhCC-----CCCCEEECCCCcCCCCCCcccc-
Q 041908 447 QLAWLYLNDNQFTGRLE----EGLLNAP-SLHILDVSNNMLSGQLPHWVGNF-----SNLDVLLMSRNSLEGDVSVPLS- 515 (883)
Q Consensus 447 ~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~- 515 (883)
+|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 34444444444443333 3344444 45555555555554444444442 5555555555555544443322
Q ss_pred ---CC-CcccEEecCCCcCcCcccccc----cc-CCCcCeeecccCcccccc----chhhhcCC-CCCEEeccCCcCCcc
Q 041908 516 ---NL-QVARILDISENKLYGPLEFSF----NH-SSSLWHLFLHNNSLNGSI----PSALFQSS-QLMTLDLRDNEFSGN 581 (883)
Q Consensus 516 ---~l-~~L~~L~Ls~n~l~~~~~~~~----~~-~~~L~~L~L~~n~l~~~~----p~~~~~~~-~L~~L~Ls~N~l~~~ 581 (883)
.+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++.. +..+...+ +|++|+|++|++++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 22 555556666555554444332 22 246666666666666432 33334444 677777777777665
Q ss_pred CCcccc----CC-CCCcEEEccCCccccc----CchhhcC-CCCCCEEEcCCCcCCCC
Q 041908 582 IPPLIN----ED-SNLRALLLRGNNLQGN----IPQQLCH-LRKIAIVDISYNLLDGS 629 (883)
Q Consensus 582 ~p~~l~----~l-~~L~~L~L~~N~l~g~----~p~~l~~-l~~L~~L~ls~N~l~~~ 629 (883)
.+..+. .+ ++|++|+|++|++++. ++..+.. .++|+.||+++|++++.
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 554332 33 4777777777777652 4444544 34777777777776643
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.8e-25 Score=245.04 Aligned_cols=249 Identities=18% Similarity=0.237 Sum_probs=153.5
Q ss_pred ccccccCCCCCCEEEccCCccCCCcch----hhhCCCCCCEEECCCCc---CCCCCCccccCCCcccEEecCCCcCcCcc
Q 041908 462 LEEGLLNAPSLHILDVSNNMLSGQLPH----WVGNFSNLDVLLMSRNS---LEGDVSVPLSNLQVARILDISENKLYGPL 534 (883)
Q Consensus 462 ~~~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 534 (883)
++..+..+++|++|++++|.+++..+. .+..+++|++|++++|. +++.+|..+. .+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LL 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------HH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------HH
Confidence 334455556666666666666544332 24455666666666542 2233333220 00
Q ss_pred ccccccCCCcCeeecccCcccc----ccchhhhcCCCCCEEeccCCcCCccCCcccc----CC---------CCCcEEEc
Q 041908 535 EFSFNHSSSLWHLFLHNNSLNG----SIPSALFQSSQLMTLDLRDNEFSGNIPPLIN----ED---------SNLRALLL 597 (883)
Q Consensus 535 ~~~~~~~~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~----~l---------~~L~~L~L 597 (883)
...+..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..+..+. .+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 0112445555666666665554 3555666666666666666666543332222 22 67777777
Q ss_pred cCCccc-ccCc---hhhcCCCCCCEEEcCCCcCCCC-----CCcccccccccccCCCCCCCcccccccccccccchhhhc
Q 041908 598 RGNNLQ-GNIP---QQLCHLRKIAIVDISYNLLDGS-----IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYY 668 (883)
Q Consensus 598 ~~N~l~-g~~p---~~l~~l~~L~~L~ls~N~l~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (883)
++|+++ +.+| ..+..+++|+.|++++|+++.. +|..+
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l---------------------------------- 212 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL---------------------------------- 212 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG----------------------------------
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh----------------------------------
Confidence 777776 3444 3566677777777777766410 00000
Q ss_pred cccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCc----ccCcccccccccCCeeeCCCCcCC
Q 041908 669 NSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELT----GEIPSAIGYLQELHALNLSHNHLS 744 (883)
Q Consensus 669 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~ 744 (883)
..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.++
T Consensus 213 -----------------------------------~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 213 -----------------------------------AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp -----------------------------------GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred -----------------------------------hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 11466778888888886 567778888888888888888888
Q ss_pred cC----CCcccc--CcCCCCEEECCCCcccc----cCCccc-cCCCCCcEEEccCCcCcccCC
Q 041908 745 GS----IPRSFS--NLKMIESMDLSYNKLRG----QIPLEL-SELNYLAIFNVSYNDLSGPTP 796 (883)
Q Consensus 745 g~----ip~~l~--~l~~L~~LdLs~N~Lsg----~ip~~l-~~l~~L~~l~ls~N~l~g~ip 796 (883)
+. +|..+. .+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 76 566663 38888888888888887 477777 567888888888888887664
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.2e-22 Score=211.22 Aligned_cols=212 Identities=20% Similarity=0.209 Sum_probs=156.4
Q ss_pred CcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcC
Q 041908 543 SLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDIS 622 (883)
Q Consensus 543 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls 622 (883)
..++++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4456666666665 4555443 577888888888887777778888888888888888887777778888888888888
Q ss_pred CCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccc
Q 041908 623 YNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYK 702 (883)
Q Consensus 623 ~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (883)
+|++++..|..|..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 88887554443322
Q ss_pred ccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCc
Q 041908 703 GGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLA 782 (883)
Q Consensus 703 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~ 782 (883)
+++|+.|+|++|+|++..+..|+.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|+
T Consensus 106 ---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 106 ---LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 46788899999999977777788999999999999999988887899999999999999999988888899999999
Q ss_pred EEEccCCcCcccCCCCccCCCC------CCcccCCCcCCCCCCCCCCCCCC
Q 041908 783 IFNVSYNDLSGPTPNTKQFANF------DESNYRGNLNLCGPAVLKNCSTD 827 (883)
Q Consensus 783 ~l~ls~N~l~g~ip~~~~~~~~------~~~~~~gn~~lc~~~~~~~c~~~ 827 (883)
.|++++|+++|..+....+..| ......|+. +|+.+....|...
T Consensus 183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred EEEeeCCceeCCccccHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 9999999999875433222111 011123443 6766666677643
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.9e-24 Score=240.17 Aligned_cols=189 Identities=16% Similarity=0.181 Sum_probs=116.8
Q ss_pred CcccccCCCCCCeEEccCcccCcccc----ccccCCCCCCEEEccCCc---cCCCcchhh-------hCCCCCCEEECCC
Q 041908 438 IFPKYMSMTQLAWLYLNDNQFTGRLE----EGLLNAPSLHILDVSNNM---LSGQLPHWV-------GNFSNLDVLLMSR 503 (883)
Q Consensus 438 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~ls~n~---l~~~~p~~~-------~~l~~L~~L~L~~ 503 (883)
++..+..+++|++|++++|.+....+ ..+..+++|++|++++|. +++.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45566778999999999999987644 447789999999999964 455566655 6778888888888
Q ss_pred CcCCC----CCCccccCCCcccEEecCCCcCcCccccccc----cC---------CCcCeeecccCccc-cccc---hhh
Q 041908 504 NSLEG----DVSVPLSNLQVARILDISENKLYGPLEFSFN----HS---------SSLWHLFLHNNSLN-GSIP---SAL 562 (883)
Q Consensus 504 n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~----~~---------~~L~~L~L~~n~l~-~~~p---~~~ 562 (883)
|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|+++ +.+| ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88876 3555667777777777777777544333322 22 55666666666654 2333 244
Q ss_pred hcCCCCCEEeccCCcCCc-----cCCccccCCCCCcEEEccCCccc----ccCchhhcCCCCCCEEEcCCCcC
Q 041908 563 FQSSQLMTLDLRDNEFSG-----NIPPLINEDSNLRALLLRGNNLQ----GNIPQQLCHLRKIAIVDISYNLL 626 (883)
Q Consensus 563 ~~~~~L~~L~Ls~N~l~~-----~~p~~l~~l~~L~~L~L~~N~l~----g~~p~~l~~l~~L~~L~ls~N~l 626 (883)
..+++|++|++++|+++. ..|..+..+++|++|+|++|.++ +.+|..+..+++|+.|++++|.+
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence 455555555555555552 12224445555555555555553 33444444444444444444433
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.4e-23 Score=228.66 Aligned_cols=251 Identities=18% Similarity=0.198 Sum_probs=189.0
Q ss_pred CCCEEEccCCccCCCcchhhhCC--CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc-cccccccCCCcCee
Q 041908 471 SLHILDVSNNMLSGQLPHWVGNF--SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP-LEFSFNHSSSLWHL 547 (883)
Q Consensus 471 ~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~L~~L 547 (883)
.++.+++++|.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 4555665 7788888888887776555 45678888888888887765 66677888888888
Q ss_pred ecccCccccccchhhhcCCCCCEEeccCC-cCCcc-CCccccCCCCCcEEEccCC-ccccc-CchhhcCCC-CCCEEEcC
Q 041908 548 FLHNNSLNGSIPSALFQSSQLMTLDLRDN-EFSGN-IPPLINEDSNLRALLLRGN-NLQGN-IPQQLCHLR-KIAIVDIS 622 (883)
Q Consensus 548 ~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~L~~N-~l~g~-~p~~l~~l~-~L~~L~ls 622 (883)
++++|.+++..|..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888888788888888888999999888 67753 6666788888999999998 88764 677788888 99999999
Q ss_pred CCc--CC-CCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccc
Q 041908 623 YNL--LD-GSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYE 699 (883)
Q Consensus 623 ~N~--l~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (883)
+|. ++ +.+|..+
T Consensus 204 ~~~~~~~~~~l~~~~----------------------------------------------------------------- 218 (336)
T 2ast_B 204 GYRKNLQKSDLSTLV----------------------------------------------------------------- 218 (336)
T ss_dssp SCGGGSCHHHHHHHH-----------------------------------------------------------------
T ss_pred CCcccCCHHHHHHHH-----------------------------------------------------------------
Confidence 884 33 1111111
Q ss_pred cccccccccccEEEccCCc-CcccCcccccccccCCeeeCCCCc-CCcCCCccccCcCCCCEEECCCCcccccCCccccC
Q 041908 700 SYKGGVLEYMTGLDLSSNE-LTGEIPSAIGYLQELHALNLSHNH-LSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSE 777 (883)
Q Consensus 700 ~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~ 777 (883)
..+++|+.|+|++|. +++..+..++.+++|++|+|++|. ++......++++++|+.|++++| ++. ..+..
T Consensus 219 ----~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~ 290 (336)
T 2ast_B 219 ----RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQL 290 (336)
T ss_dssp ----HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHH
T ss_pred ----hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHH
Confidence 125788999999999 788888899999999999999995 33222236888999999999999 332 23344
Q ss_pred CC-CCcEEEccCCcCcccCCCC
Q 041908 778 LN-YLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 778 l~-~L~~l~ls~N~l~g~ip~~ 798 (883)
+. .+..|++++|+++|..|..
T Consensus 291 l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 291 LKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp HHHHSTTSEESCCCSCCTTCSS
T ss_pred HHhhCcceEEecccCccccCCc
Confidence 42 3677789999999988854
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=9.9e-23 Score=218.93 Aligned_cols=209 Identities=17% Similarity=0.145 Sum_probs=122.7
Q ss_pred CCCCEEECCCCcCCCCCCccc--cCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEE
Q 041908 494 SNLDVLLMSRNSLEGDVSVPL--SNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL 571 (883)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 571 (883)
++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..+.. ....+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~--------------------~~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWL--------------------AELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSH--------------------HHHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhh--------------------HHHHhhhccCCCEE
Confidence 446666666666655555544 44555555555555444322200 00223345666666
Q ss_pred eccCCcCCccCCccccCCCCCcEEEccCCccccc--Cc--hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908 572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN--IP--QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647 (883)
Q Consensus 572 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~--~p--~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 647 (883)
++++|++++..|..++.+++|++|+|++|++.+. ++ ..+..+++|++|++++|+++. +|.....+
T Consensus 151 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l---------- 219 (310)
T 4glp_A 151 SIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAAL---------- 219 (310)
T ss_dssp EEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHH----------
T ss_pred EeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHH----------
Confidence 6666666655556666666666666666665542 21 223456667777777776641 11100000
Q ss_pred CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI 727 (883)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 727 (883)
...+++|++|||++|++++.+|..+
T Consensus 220 -------------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 220 -------------------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp -------------------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred -------------------------------------------------------HhcCCCCCEEECCCCCCCccchhhH
Confidence 0114566777777777777767666
Q ss_pred ccc---ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908 728 GYL---QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793 (883)
Q Consensus 728 ~~l---~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g 793 (883)
+.+ ++|++|+|++|+|+ .+|..+. ++|+.|||++|+|++. |. +..+++|+.|++++|+++.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 666 57778888888887 5666664 6788888888888763 33 4666778888888887764
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.2e-23 Score=219.55 Aligned_cols=202 Identities=21% Similarity=0.263 Sum_probs=160.8
Q ss_pred CCCcCeeecccCccccccchhh--hcCCCCCEEeccCCcCCccCC----ccccCCCCCcEEEccCCcccccCchhhcCCC
Q 041908 541 SSSLWHLFLHNNSLNGSIPSAL--FQSSQLMTLDLRDNEFSGNIP----PLINEDSNLRALLLRGNNLQGNIPQQLCHLR 614 (883)
Q Consensus 541 ~~~L~~L~L~~n~l~~~~p~~~--~~~~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~ 614 (883)
+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|++.+..|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3568888888888887777777 778888888888888887655 3445789999999999999988889999999
Q ss_pred CCCEEEcCCCcCCCC--CCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908 615 KIAIVDISYNLLDGS--IPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF 692 (883)
Q Consensus 615 ~L~~L~ls~N~l~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 692 (883)
+|++||+++|++.+. ++....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~--------------------------------------------------------- 192 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALC--------------------------------------------------------- 192 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSC---------------------------------------------------------
T ss_pred CCCEEECCCCCCccchhhhHHHh---------------------------------------------------------
Confidence 999999999998642 111000
Q ss_pred eeccccccccccccccccEEEccCCcCcccCcc----cccccccCCeeeCCCCcCCcCCCccccCc---CCCCEEECCCC
Q 041908 693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIPS----AIGYLQELHALNLSHNHLSGSIPRSFSNL---KMIESMDLSYN 765 (883)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l---~~L~~LdLs~N 765 (883)
...+++|++|+|++|+++ .+|. .++.+++|++|+|++|++++.+|..++.+ ++|++|+|++|
T Consensus 193 ----------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 193 ----------PHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp ----------TTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred ----------hhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 012578899999999997 3333 35788999999999999999989888887 69999999999
Q ss_pred cccccCCccccCCCCCcEEEccCCcCcccCCCCccCCCCCCcccCCCcC
Q 041908 766 KLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTKQFANFDESNYRGNLN 814 (883)
Q Consensus 766 ~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~gn~~ 814 (883)
+++ .+|..+. ++|+.||+++|++++. |.-..+..+....+.||+-
T Consensus 262 ~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 262 GLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred CCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCC
Confidence 999 7788775 7999999999999983 4334455555556677763
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.2e-23 Score=227.07 Aligned_cols=198 Identities=16% Similarity=0.137 Sum_probs=106.8
Q ss_pred CCCEEEccCcccCCcCcccccCC--CCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCC-cchhhhCCCCCCEE
Q 041908 423 SLAFMNVSHNYFGGQIFPKYMSM--TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQ-LPHWVGNFSNLDVL 499 (883)
Q Consensus 423 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L 499 (883)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777776665 2334444 5666777777766655544 33566666666666666544 55556666666666
Q ss_pred ECCCCcCCCCCCccccCCCcccEEecCCC-cCcCc-cccccccCCCcCeeecccC-ccccc-cchhhhcCC-CCCEEecc
Q 041908 500 LMSRNSLEGDVSVPLSNLQVARILDISEN-KLYGP-LEFSFNHSSSLWHLFLHNN-SLNGS-IPSALFQSS-QLMTLDLR 574 (883)
Q Consensus 500 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~~~-~L~~L~Ls 574 (883)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666665555555555666666666665 34432 3333444555555555555 55433 344445555 55555555
Q ss_pred CC--cCC-ccCCccccCCCCCcEEEccCCc-ccccCchhhcCCCCCCEEEcCCC
Q 041908 575 DN--EFS-GNIPPLINEDSNLRALLLRGNN-LQGNIPQQLCHLRKIAIVDISYN 624 (883)
Q Consensus 575 ~N--~l~-~~~p~~l~~l~~L~~L~L~~N~-l~g~~p~~l~~l~~L~~L~ls~N 624 (883)
+| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 55 233 2333444444455555555554 34344444444444444444444
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.4e-21 Score=207.13 Aligned_cols=135 Identities=25% Similarity=0.274 Sum_probs=77.3
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEE
Q 041908 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTL 571 (883)
Q Consensus 492 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 571 (883)
.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence 3444444444444444 233344444555555555555554444455555555555555555554444445556666666
Q ss_pred eccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCC
Q 041908 572 DLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDG 628 (883)
Q Consensus 572 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~ 628 (883)
+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+.+|+.+++++|++..
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 66666666544445566667777777777766 566666666677777777777654
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.5e-21 Score=207.43 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=36.5
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccc
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRG 769 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg 769 (883)
+++|+.|+|++|++++..| +..+++|+.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3455666666666663332 5666666666666666665442 6666666666666666654
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.7e-21 Score=200.83 Aligned_cols=79 Identities=20% Similarity=0.168 Sum_probs=41.7
Q ss_pred cccc-EEEccCCcCcccCcccccccccCCeeeCCCCc-CCcCCCccccCc-CCCCEEECCCCcccccCCccccCCCCCcE
Q 041908 707 EYMT-GLDLSSNELTGEIPSAIGYLQELHALNLSHNH-LSGSIPRSFSNL-KMIESMDLSYNKLRGQIPLELSELNYLAI 783 (883)
Q Consensus 707 ~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip~~l~~l-~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~ 783 (883)
++|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|+.+ ++|+.||+++|++++ +|.. .+++|+.
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~ 230 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKE 230 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSE
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCce
Confidence 3445 5555555555 333332222556666666663 655555556666 666666666666653 3322 3445555
Q ss_pred EEccCC
Q 041908 784 FNVSYN 789 (883)
Q Consensus 784 l~ls~N 789 (883)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 665544
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=4.5e-21 Score=205.45 Aligned_cols=173 Identities=17% Similarity=0.307 Sum_probs=127.3
Q ss_pred cccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCC
Q 041908 538 FNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIA 617 (883)
Q Consensus 538 ~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~ 617 (883)
+..+++|++|++++|.+++ ++. +..+++|++|++++|++++. + .+..+++|++|++++|++++ ++. +..+++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 132 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQ 132 (308)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCC
T ss_pred hhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCC
Confidence 4444555555555555553 222 56666666666666666642 2 46667777777777777764 333 67777788
Q ss_pred EEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccc
Q 041908 618 IVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNR 697 (883)
Q Consensus 618 ~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 697 (883)
.|++++|++++..+ +
T Consensus 133 ~L~l~~n~l~~~~~--l--------------------------------------------------------------- 147 (308)
T 1h6u_A 133 VLYLDLNQITNISP--L--------------------------------------------------------------- 147 (308)
T ss_dssp EEECCSSCCCCCGG--G---------------------------------------------------------------
T ss_pred EEECCCCccCcCcc--c---------------------------------------------------------------
Confidence 88888887764322 1
Q ss_pred cccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccC
Q 041908 698 YESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSE 777 (883)
Q Consensus 698 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~ 777 (883)
..+++|+.|+|++|++++. |. +..+++|+.|+|++|++++..| +..+++|+.|+|++|++++..| +..
T Consensus 148 ------~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 148 ------AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp ------GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred ------cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence 1156788999999999854 44 8999999999999999997654 8999999999999999997654 899
Q ss_pred CCCCcEEEccCCcCcc
Q 041908 778 LNYLAIFNVSYNDLSG 793 (883)
Q Consensus 778 l~~L~~l~ls~N~l~g 793 (883)
+++|+.|++++|++++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 9999999999999987
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.4e-21 Score=199.70 Aligned_cols=197 Identities=18% Similarity=0.139 Sum_probs=137.3
Q ss_pred CCCEEECCCCcCCCCCCccccCCCcccEEecCCCc-CcCccccccccCCCcCeeeccc-CccccccchhhhcCCCCCEEe
Q 041908 495 NLDVLLMSRNSLEGDVSVPLSNLQVARILDISENK-LYGPLEFSFNHSSSLWHLFLHN-NSLNGSIPSALFQSSQLMTLD 572 (883)
Q Consensus 495 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~p~~~~~~~~L~~L~ 572 (883)
+|++|++++|++++..+..+.++++|++|++++|+ +++..+..|..+++|++|++++ |++++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555444455556666666666664 5444444566666777777776 666655455666777777777
Q ss_pred ccCCcCCccCCccccCCCCCc---EEEccCC-cccccCchhhcCCCCCC-EEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908 573 LRDNEFSGNIPPLINEDSNLR---ALLLRGN-NLQGNIPQQLCHLRKIA-IVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647 (883)
Q Consensus 573 Ls~N~l~~~~p~~l~~l~~L~---~L~L~~N-~l~g~~p~~l~~l~~L~-~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 647 (883)
+++|++++ +|. +..+++|+ +|++++| ++++..+..+..+++|+ .|++++|+++ .+|.....
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~----------- 177 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN----------- 177 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT-----------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcC-----------
Confidence 77777775 555 66677776 8888888 77766666788888888 8888888876 44432110
Q ss_pred CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCc-CcccCccc
Q 041908 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNE-LTGEIPSA 726 (883)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~-l~g~ip~~ 726 (883)
.++|+.|+|++|+ +++..+..
T Consensus 178 ----------------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 178 ----------------------------------------------------------GTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp ----------------------------------------------------------TCEEEEEECTTCTTCCEECTTT
T ss_pred ----------------------------------------------------------CCCCCEEEcCCCCCcccCCHHH
Confidence 1467889999995 99777788
Q ss_pred cccc-ccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCc
Q 041908 727 IGYL-QELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNK 766 (883)
Q Consensus 727 l~~l-~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 766 (883)
|.++ ++|+.|+|++|++++. |.. .+++|+.|+++++.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred hhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 9999 9999999999999954 443 67889999998763
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=6.7e-21 Score=191.79 Aligned_cols=184 Identities=30% Similarity=0.351 Sum_probs=132.6
Q ss_pred CccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q 041908 67 CSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLS 146 (883)
Q Consensus 67 c~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls 146 (883)
|.|.+|.|.............++|++|++++|.+.+..+..+.++++|++|++++|++++ +|...+.++++|++|+++
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS--LPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc--cChhhcCCCCCcCEEECC
Confidence 899999998654322223335678888888888887666677888888888888888875 665567788888888888
Q ss_pred CCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcC
Q 041908 147 GNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFAN 226 (883)
Q Consensus 147 ~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~ 226 (883)
+|.+.+..+ ..+..+++|++|++++|++++..+..+.++++|++|++++|+++ .+|...+..
T Consensus 85 ~n~l~~~~~-----------------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 146 (208)
T 2o6s_A 85 TNQLQSLPN-----------------GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 146 (208)
T ss_dssp SSCCCCCCT-----------------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT
T ss_pred CCcCCccCH-----------------hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhcc
Confidence 887765444 45677788888888888887666666777888888888888877 455456777
Q ss_pred CCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCCCCCCCccceEEEcccCcCCccCchhhhcCCC
Q 041908 227 LTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRRCNISGTIPSFLQYQYD 301 (883)
Q Consensus 227 l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 301 (883)
+++|++|++++|.+.+..+ +|+.|+++.|.++|.+|..++.++.
T Consensus 147 l~~L~~L~l~~N~~~~~~~-------------------------------~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDCTCP-------------------------------GIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTCCEEECCSCCBCCCTT-------------------------------TTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CCCccEEEecCCCeecCCC-------------------------------CHHHHHHHHHhCCceeeccCccccC
Confidence 7778888877777664322 3555666777777777776665544
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=3.6e-20 Score=192.30 Aligned_cols=181 Identities=19% Similarity=0.176 Sum_probs=132.9
Q ss_pred CCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecC
Q 041908 447 QLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS 526 (883)
Q Consensus 447 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 526 (883)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666665 3343332 467777777777776666667777777777777777777666667777777777777
Q ss_pred CCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccC
Q 041908 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI 606 (883)
Q Consensus 527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~ 606 (883)
+|++++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..++.+++|++|+|++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777766667777777888888888777555556677888888888888888666667888888888888888888777
Q ss_pred chhhcCCCCCCEEEcCCCcCCCCC
Q 041908 607 PQQLCHLRKIAIVDISYNLLDGSI 630 (883)
Q Consensus 607 p~~l~~l~~L~~L~ls~N~l~~~~ 630 (883)
+..+..+++|+.|++++|++++..
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHHhCCCCCCEEEeeCCceeCCc
Confidence 777888888888888888887653
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.6e-20 Score=215.65 Aligned_cols=134 Identities=28% Similarity=0.382 Sum_probs=81.7
Q ss_pred CCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecc
Q 041908 471 SLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLH 550 (883)
Q Consensus 471 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~ 550 (883)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 67777777777765 55544 256777777777776 444 345666777777776665 444 433 66666666
Q ss_pred cCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908 551 NNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 551 ~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|++++|+++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 666664 454 45666666666666664 444 34566666666666664 554 43 55666666666655
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=4.1e-20 Score=212.30 Aligned_cols=189 Identities=24% Similarity=0.337 Sum_probs=136.5
Q ss_pred CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEec
Q 041908 494 SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDL 573 (883)
Q Consensus 494 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L 573 (883)
.+++.|++++|.+++ +|..+. ++|++|++++|+++ .+| ..+++|+.|++++|++++ +|. +.. +|+.|++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 388899999998887 565553 77888888888887 455 346788888888888876 666 544 7888888
Q ss_pred cCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccc
Q 041908 574 RDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFG 653 (883)
Q Consensus 574 s~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~ 653 (883)
++|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|++++ +|. +.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------ 179 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------ 179 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence 8888886 555 56788888888888875 565 46778888888887765 443 21
Q ss_pred cccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccccccccC
Q 041908 654 YTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQEL 733 (883)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 733 (883)
++|+.|||++|+|+ .+|. +.. +|
T Consensus 180 -----------------------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L 202 (571)
T 3cvr_A 180 -----------------------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RN 202 (571)
T ss_dssp -----------------------------------------------------TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred -----------------------------------------------------CCCCEEECcCCCCC-chhh-HHH--hh
Confidence 34677888888887 6666 554 66
Q ss_pred -------CeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC
Q 041908 734 -------HALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN 779 (883)
Q Consensus 734 -------~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~ 779 (883)
+.|+|++|+|+ .+|..+..+++|+.|||++|++++.+|..+..++
T Consensus 203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77888888887 5677777788888888888888877777766543
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=190.16 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=127.4
Q ss_pred CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc-hhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908 569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP-QQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647 (883)
Q Consensus 569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 647 (883)
+.+++++|.++ .+|..+. ..+++|++++|++++..| ..+..+++|+.|++++|++++..|..|..
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 46677777766 3555443 345677777777776644 34677788888888888777554443322
Q ss_pred CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI 727 (883)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 727 (883)
+++|+.|||++|++++..|..|
T Consensus 80 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 80 ----------------------------------------------------------ASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSSCCCCCCGGGG
T ss_pred ----------------------------------------------------------CCCCCEEECCCCccCccCHhHh
Confidence 4678889999999998888889
Q ss_pred cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCCCc
Q 041908 728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPNTK 799 (883)
Q Consensus 728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~ 799 (883)
+.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|+.|++++|+++|.++..+
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 173 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAW 173 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHH
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999887543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=182.79 Aligned_cols=130 Identities=22% Similarity=0.159 Sum_probs=50.7
Q ss_pred CCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccC
Q 041908 496 LDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD 575 (883)
Q Consensus 496 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~ 575 (883)
|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC
Confidence 33333333333333333333333333333333333333232333333333444444433322222333444444444444
Q ss_pred CcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCc
Q 041908 576 NEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNL 625 (883)
Q Consensus 576 N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~ 625 (883)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 44443333334444444444444444443333333444444444444443
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.7e-19 Score=197.12 Aligned_cols=171 Identities=17% Similarity=0.098 Sum_probs=81.5
Q ss_pred CeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCC-ccccCCCcccE-EecC
Q 041908 449 AWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVS-VPLSNLQVARI-LDIS 526 (883)
Q Consensus 449 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~-L~Ls 526 (883)
++++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|++.+.+| ..|.++++++. +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44555666665 344433 2456666666666653333455666666666666666544333 23455554433 3344
Q ss_pred CCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccC-CcCCccCCccccCCC-CCcEEEccCCcccc
Q 041908 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRD-NEFSGNIPPLINEDS-NLRALLLRGNNLQG 604 (883)
Q Consensus 527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~-N~l~~~~p~~l~~l~-~L~~L~L~~N~l~g 604 (883)
.|++....|..|..+++|++|++++|++++..+..+....++..+++.+ +++....+..+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 4555555455555555555555555555543333344444445555533 334333333333332 3444555555554
Q ss_pred cCchhhcCCCCCCEEEcCC
Q 041908 605 NIPQQLCHLRKIAIVDISY 623 (883)
Q Consensus 605 ~~p~~l~~l~~L~~L~ls~ 623 (883)
.+|.......+|+.+++++
T Consensus 168 ~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp EECTTSSTTEEEEEEECTT
T ss_pred CCChhhccccchhHHhhcc
Confidence 2333222333444444443
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7.7e-20 Score=185.37 Aligned_cols=157 Identities=21% Similarity=0.258 Sum_probs=112.7
Q ss_pred CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCC
Q 041908 569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFN 648 (883)
Q Consensus 569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 648 (883)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..+..+++|+.|++++|++++..|..|..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 34555555555 3444432 45666666666666555556666666666677666666554544322
Q ss_pred CcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc
Q 041908 649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG 728 (883)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 728 (883)
+++|+.|||++|+|++..+..|.
T Consensus 79 ---------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 79 ---------------------------------------------------------LRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp ---------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTT
T ss_pred ---------------------------------------------------------CcCCCEEECCCCcCCccCHhHcc
Confidence 35667778888888755555578
Q ss_pred ccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908 729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 729 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 797 (883)
.+++|++|+|++|++++..|..|+.+++|+.|||++|++++..|..+..+++|+.|++++|++.|.++.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 888888888888888888888888888999999999999888878888888899999999998886653
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.6e-19 Score=193.62 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=123.6
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCE-EEccCCc
Q 041908 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVE-LNLSWNK 190 (883)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~-L~Ls~n~ 190 (883)
+++++|+|++|+++. +|..+|.++++|++|+|++|++.+.+|. ..+.+++++++ +.++.|+
T Consensus 30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----------------~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEA----------------DVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECT----------------TSBCSCTTCCEEEEEEETT
T ss_pred CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccCh----------------hHhhcchhhhhhhcccCCc
Confidence 456666777776664 6655677777777777777776655541 23566666654 4555677
Q ss_pred CCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCC-cCccccChHhhhcCC-CCcEEEccCcccccC
Q 041908 191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGN-NFQGSFSLSVLANHS-RLEVLQISRLQIETE 268 (883)
Q Consensus 191 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n-~l~g~~~~~~l~~l~-~L~~L~L~~~~~~~~ 268 (883)
++...|..|..+++|++|++++|+++ .+|...+....++..|++.++ ++. .++...+..+. .++.|++++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred ccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCC
Confidence 77666677777777777777777777 455355556666777777553 343 45544454443 466666666666655
Q ss_pred CCCCCCCccceEEEccc-CcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcc
Q 041908 269 NFPWLPRFQLKVLNLRR-CNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLF 333 (883)
Q Consensus 269 ~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~ 333 (883)
....+...+|+++++.+ |.++...+..|..+++|++||+++|+++ .+|... +.+|+.|.+.
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l 231 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRAR 231 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECT
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhc
Confidence 55555556777777765 4444333446677777777777777777 566532 3444444443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.3e-18 Score=177.63 Aligned_cols=162 Identities=31% Similarity=0.406 Sum_probs=137.6
Q ss_pred CCCCCccceeecCCCCCCCCCCcCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCE
Q 041908 63 TSDCCSWERIKCNVTTANYNNNGSLKQLKILNIGFNSFSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEV 142 (883)
Q Consensus 63 ~~~cc~w~gv~C~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~ 142 (883)
+...|+|++|.|...........-.++|++|+|++|.+.+..+..+..+++|++|+|++|.+.. +|...+..+++|++
T Consensus 15 ~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~ 92 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTV 92 (229)
T ss_dssp TTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCE
T ss_pred CCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCE
Confidence 3678999999997643321112234889999999999999889999999999999999999976 77677899999999
Q ss_pred EECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChh
Q 041908 143 LDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPIS 222 (883)
Q Consensus 143 L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~ 222 (883)
|+|++|++.+..+ ..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 93 L~Ls~N~l~~l~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~ 153 (229)
T 3e6j_A 93 LDLGTNQLTVLPS-----------------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG 153 (229)
T ss_dssp EECCSSCCCCCCT-----------------TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTT
T ss_pred EECCCCcCCccCh-----------------hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHH
Confidence 9999999986655 56788999999999999998 78889999999999999999999 66657
Q ss_pred hhcCCCCCCEEeccCCcCccccC
Q 041908 223 VFANLTSLEYLSLSGNNFQGSFS 245 (883)
Q Consensus 223 ~~~~l~~L~~L~L~~n~l~g~~~ 245 (883)
.+..+++|++|++++|.+.+..+
T Consensus 154 ~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHhCCCCCCEEEeeCCCccCCcc
Confidence 79999999999999999886553
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.3e-18 Score=175.78 Aligned_cols=157 Identities=23% Similarity=0.263 Sum_probs=121.5
Q ss_pred CCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908 568 LMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647 (883)
Q Consensus 568 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 647 (883)
.+.++.++++++ .+|..+. ++|++|+|++|++++..|..+..+++|+.|++++|++++..+..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 345666666665 4554443 66777777777777766777777777777777777775433332221
Q ss_pred CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI 727 (883)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 727 (883)
+++|+.|||++|+|++..+..|
T Consensus 87 ----------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~ 108 (229)
T 3e6j_A 87 ----------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVF 108 (229)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSSCCCCCCTTTT
T ss_pred ----------------------------------------------------------CCCcCEEECCCCcCCccChhHh
Confidence 4677888999999987777778
Q ss_pred cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908 728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 797 (883)
..+++|++|+|++|+|+ .+|..+..+++|+.|||++|+|++..+..+..+++|+.|++++|++.|.++.
T Consensus 109 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 89999999999999999 7888899999999999999999987778889999999999999999998773
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=5.8e-19 Score=193.64 Aligned_cols=179 Identities=25% Similarity=0.213 Sum_probs=109.1
Q ss_pred eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCcccc-CCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCC
Q 041908 546 HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLIN-EDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN 624 (883)
Q Consensus 546 ~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N 624 (883)
.++++++.++ .+|..+. ..++.|+|++|++++..+..+. .+++|++|+|++|++++..|..|..+++|+.|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4444444444 3443332 2456666666666655555555 6666666666666666555566666666666666666
Q ss_pred cCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccc
Q 041908 625 LLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704 (883)
Q Consensus 625 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (883)
++++..+..|..
T Consensus 99 ~l~~~~~~~~~~-------------------------------------------------------------------- 110 (361)
T 2xot_A 99 HLHTLDEFLFSD-------------------------------------------------------------------- 110 (361)
T ss_dssp CCCEECTTTTTT--------------------------------------------------------------------
T ss_pred cCCcCCHHHhCC--------------------------------------------------------------------
Confidence 665433322211
Q ss_pred ccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccc---cCcCCCCEEECCCCcccccCCccccCCCC-
Q 041908 705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSF---SNLKMIESMDLSYNKLRGQIPLELSELNY- 780 (883)
Q Consensus 705 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~- 780 (883)
+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++.
T Consensus 111 -l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 111 -LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp -CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred -CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 3556677777777776666777777777777777777775444444 55777777777777777655556666665
Q ss_pred -CcEEEccCCcCcccCC
Q 041908 781 -LAIFNVSYNDLSGPTP 796 (883)
Q Consensus 781 -L~~l~ls~N~l~g~ip 796 (883)
++.|++++|++.|.+.
T Consensus 190 ~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 190 VKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHTTEECCSSCEECCHH
T ss_pred hcceEEecCCCccCCcC
Confidence 3667777777776543
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.5e-18 Score=182.31 Aligned_cols=172 Identities=20% Similarity=0.326 Sum_probs=112.0
Q ss_pred ccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCE
Q 041908 539 NHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAI 618 (883)
Q Consensus 539 ~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~ 618 (883)
..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|++++|++++ + ..+..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 345566666666666653 33 35666677777777777665433 6666777777777777664 2 23666777777
Q ss_pred EEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccc
Q 041908 619 VDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRY 698 (883)
Q Consensus 619 L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 698 (883)
|++++|++++. + .+
T Consensus 117 L~L~~n~i~~~-~-~l---------------------------------------------------------------- 130 (291)
T 1h6t_A 117 LSLEHNGISDI-N-GL---------------------------------------------------------------- 130 (291)
T ss_dssp EECTTSCCCCC-G-GG----------------------------------------------------------------
T ss_pred EECCCCcCCCC-h-hh----------------------------------------------------------------
Confidence 77777766542 1 11
Q ss_pred ccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCC
Q 041908 699 ESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSEL 778 (883)
Q Consensus 699 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l 778 (883)
..+++|+.|++++|++++. ..++.+++|+.|+|++|++++..| ++.+++|+.|++++|++++ +| .+..+
T Consensus 131 -----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l 199 (291)
T 1h6t_A 131 -----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGL 199 (291)
T ss_dssp -----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTC
T ss_pred -----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccC
Confidence 1145667777777777754 457777777777777777776554 7777777777777777775 33 36777
Q ss_pred CCCcEEEccCCcCcc
Q 041908 779 NYLAIFNVSYNDLSG 793 (883)
Q Consensus 779 ~~L~~l~ls~N~l~g 793 (883)
++|+.|++++|+++.
T Consensus 200 ~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 200 KNLDVLELFSQECLN 214 (291)
T ss_dssp TTCSEEEEEEEEEEC
T ss_pred CCCCEEECcCCcccC
Confidence 777777777777765
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=174.64 Aligned_cols=156 Identities=21% Similarity=0.225 Sum_probs=122.4
Q ss_pred CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCC-ccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCC
Q 041908 545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIP-PLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISY 623 (883)
Q Consensus 545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~ 623 (883)
+.+++++|.++ .+|..+. ..+++|++++|++++..| ..+..+++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666665 3554432 346777777777776644 4467788888888888888877777788888888888888
Q ss_pred CcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccc
Q 041908 624 NLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKG 703 (883)
Q Consensus 624 N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (883)
|++++..|..|..
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------------------------- 103 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------------------------- 103 (220)
T ss_dssp SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred CccCccCHhHhcC-------------------------------------------------------------------
Confidence 8887655544422
Q ss_pred cccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCC
Q 041908 704 GVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIP 772 (883)
Q Consensus 704 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip 772 (883)
+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|+.+++|+.|+|++|.+++..+
T Consensus 104 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 104 --LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp --CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred --CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 4678889999999998889999999999999999999999999999999999999999999997655
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5e-18 Score=171.99 Aligned_cols=154 Identities=23% Similarity=0.236 Sum_probs=126.9
Q ss_pred CeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCC
Q 041908 545 WHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYN 624 (883)
Q Consensus 545 ~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N 624 (883)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666665 4555443 57888888888888777778888888999999999888888888899999999999999
Q ss_pred cCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeecccccccccc
Q 041908 625 LLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGG 704 (883)
Q Consensus 625 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (883)
+++...+..|..
T Consensus 91 ~l~~l~~~~f~~-------------------------------------------------------------------- 102 (220)
T 2v9t_B 91 KITELPKSLFEG-------------------------------------------------------------------- 102 (220)
T ss_dssp CCCCCCTTTTTT--------------------------------------------------------------------
T ss_pred cCCccCHhHccC--------------------------------------------------------------------
Confidence 887443332221
Q ss_pred ccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908 705 VLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770 (883)
Q Consensus 705 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ 770 (883)
+++|+.|+|++|+|++..|..|+.+++|++|+|++|+|++..+..|..+++|+.|+|++|+++..
T Consensus 103 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 103 -LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred -CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 56789999999999988899999999999999999999998888899999999999999999854
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.5e-18 Score=196.92 Aligned_cols=169 Identities=22% Similarity=0.265 Sum_probs=123.8
Q ss_pred CCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEec
Q 041908 446 TQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDI 525 (883)
Q Consensus 446 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 525 (883)
..+..+.+..+.+....+ +..++.|+.|++++|.+.. +| .+..+++|+.|+|++|++++..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345556677777665544 3457788888888888874 44 47888888888888888887555 778888888888
Q ss_pred CCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccccc
Q 041908 526 SENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGN 605 (883)
Q Consensus 526 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ 605 (883)
++|.+.+. + .+..+++|+.|+|++|.+++ + +.+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+.
T Consensus 95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC-T-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC-h-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 88888763 2 56777788888888888774 3 3577777888888888887754 5677777777777777777765
Q ss_pred CchhhcCCCCCCEEEcCCCcCCC
Q 041908 606 IPQQLCHLRKIAIVDISYNLLDG 628 (883)
Q Consensus 606 ~p~~l~~l~~L~~L~ls~N~l~~ 628 (883)
.| +..+++|+.|+|++|++++
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB
T ss_pred hh--hccCCCCCEEECcCCCCCC
Confidence 55 7777777777777777654
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.8e-18 Score=171.33 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=90.4
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN 785 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ 785 (883)
+++|+.|||++|+|++.+|..|+.+++|++|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45677888888888888888888888899999999999888888888899999999999999988888888888999999
Q ss_pred ccCCcCcccCCCCccCCCCCCcccCCCcCCCCCC
Q 041908 786 VSYNDLSGPTPNTKQFANFDESNYRGNLNLCGPA 819 (883)
Q Consensus 786 ls~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~~~ 819 (883)
+++|+++|.++..+...++....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999887754333333333455666667654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=1e-20 Score=218.76 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=41.6
Q ss_pred ccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC-CccccCcCCCCEEECCCCcccccCCcc---ccCCCCCc
Q 041908 707 EYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI-PRSFSNLKMIESMDLSYNKLRGQIPLE---LSELNYLA 782 (883)
Q Consensus 707 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~Lsg~ip~~---l~~l~~L~ 782 (883)
++|+.|||++|+|++ +| .++.+++|++|+|++|+|++.+ |..++.+++|+.|||++|++++.+|.. +..+++|+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 344555555555553 44 5555566666666666665554 555666666666666666665544321 12245555
Q ss_pred EEE
Q 041908 783 IFN 785 (883)
Q Consensus 783 ~l~ 785 (883)
.||
T Consensus 564 ~L~ 566 (567)
T 1dce_A 564 SIL 566 (567)
T ss_dssp EEE
T ss_pred ccC
Confidence 554
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=183.29 Aligned_cols=177 Identities=24% Similarity=0.297 Sum_probs=144.7
Q ss_pred CccceeecCCCCCC--CCCCcCCCCCCEEECCCCCCCCCCchhhc-CCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEE
Q 041908 67 CSWERIKCNVTTAN--YNNNGSLKQLKILNIGFNSFSESLVPLLT-SLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVL 143 (883)
Q Consensus 67 c~w~gv~C~~~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L 143 (883)
|.|..+.|...... +..+ .+.+++|+|++|.+.+..+..+. ++++|++|+|++|++++ ++...|.++++|++|
T Consensus 18 C~~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~--i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF--ISSEAFVPVPNLRYL 93 (361)
T ss_dssp EETTEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE--ECTTTTTTCTTCCEE
T ss_pred ECCCEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc--cChhhccCCCCCCEE
Confidence 88999999754321 2222 35689999999999987777787 99999999999999987 665789999999999
Q ss_pred ECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhh
Q 041908 144 DLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISV 223 (883)
Q Consensus 144 ~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~ 223 (883)
+|++|++.+..+ ..+..+++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|...
T Consensus 94 ~Ls~N~l~~~~~-----------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 155 (361)
T 2xot_A 94 DLSSNHLHTLDE-----------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155 (361)
T ss_dssp ECCSSCCCEECT-----------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGG
T ss_pred ECCCCcCCcCCH-----------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHH
Confidence 999999876554 56888999999999999999888899999999999999999999 788566
Q ss_pred h---cCCCCCCEEeccCCcCccccChHhhhcCCCC--cEEEccCcccc
Q 041908 224 F---ANLTSLEYLSLSGNNFQGSFSLSVLANHSRL--EVLQISRLQIE 266 (883)
Q Consensus 224 ~---~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L--~~L~L~~~~~~ 266 (883)
| ..+++|++|+|++|+++ .++...+..++.+ +.|++++|.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred hcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 6 67999999999999998 6777778777763 66666666543
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=1.9e-20 Score=216.38 Aligned_cols=202 Identities=20% Similarity=0.170 Sum_probs=148.1
Q ss_pred CCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCc-------------CCCCCCccccCCCcccEEe-cCCCcCcCcc
Q 041908 469 APSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNS-------------LEGDVSVPLSNLQVARILD-ISENKLYGPL 534 (883)
Q Consensus 469 l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~~~ 534 (883)
++.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+.+|..+..+++|+.|+ ++.|.+
T Consensus 348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~---- 422 (567)
T 1dce_A 348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL---- 422 (567)
T ss_dssp TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH----
T ss_pred CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc----
Confidence 445555555555554 455555555555555554432 3445555566666666666 444432
Q ss_pred ccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCC
Q 041908 535 EFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLR 614 (883)
Q Consensus 535 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~ 614 (883)
..|+.+.+++|.+++ +|. ..|+.|+|++|++++ +|. ++.+++|+.|+|++|+++ .+|..++.++
T Consensus 423 -------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 -------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp -------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred -------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 245555666666653 222 359999999999996 676 999999999999999999 8899999999
Q ss_pred CCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEee
Q 041908 615 KIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMA 694 (883)
Q Consensus 615 ~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 694 (883)
+|+.|+|++|++++ +| .+..
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~---------------------------------------------------------- 506 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVAN---------------------------------------------------------- 506 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTT----------------------------------------------------------
T ss_pred CCCEEECCCCCCCC-Cc-ccCC----------------------------------------------------------
Confidence 99999999999986 55 3322
Q ss_pred ccccccccccccccccEEEccCCcCcccC-cccccccccCCeeeCCCCcCCcCCCcc---ccCcCCCCEEEC
Q 041908 695 KNRYESYKGGVLEYMTGLDLSSNELTGEI-PSAIGYLQELHALNLSHNHLSGSIPRS---FSNLKMIESMDL 762 (883)
Q Consensus 695 ~~~~~~~~~~~l~~L~~LdLs~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~ip~~---l~~l~~L~~LdL 762 (883)
+++|+.|||++|+|++.+ |..++.+++|+.|+|++|.+++.+|.. +..+++|+.||+
T Consensus 507 -----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 -----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 578899999999999887 999999999999999999999876632 345899999975
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2.3e-17 Score=174.93 Aligned_cols=185 Identities=19% Similarity=0.213 Sum_probs=95.5
Q ss_pred EeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCc
Q 041908 402 LDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNM 481 (883)
Q Consensus 402 L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 481 (883)
+.+..+.+.+..+. ..+++|+.|++++|.+... +.+..+++|++|++++|++++..+ +..+++|++|++++|.
T Consensus 29 ~~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEECH---HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHhcCCCcccccch---hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 34445554433232 2456667777776666543 235556666666666666665433 5556666666666666
Q ss_pred cCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchh
Q 041908 482 LSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSA 561 (883)
Q Consensus 482 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 561 (883)
+++ +| .+..+++|++|++++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..|
T Consensus 102 l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-- 173 (291)
T 1h6t_A 102 VKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 173 (291)
T ss_dssp CCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--
Confidence 653 22 255566666666666665542 2345555555555555555443 234444455555555555543222
Q ss_pred hhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCccc
Q 041908 562 LFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQ 603 (883)
Q Consensus 562 ~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 603 (883)
+..+++|+.|++++|++++ +| .+..+++|+.|++++|+++
T Consensus 174 l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 4444455555555554443 22 2444444444444444444
No 115
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=1.4e-18 Score=207.37 Aligned_cols=134 Identities=23% Similarity=0.209 Sum_probs=43.0
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
+.++.|++.+|.+.. .+.. .|+.++|+.|.+.+ ++++.|.+. ..+..+..++.|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~-----~l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQA-----LLQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhh-----HhhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 457788888887764 3332 33444455544432 122222222 22333444444555555
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
++|.+. .+|..+..+++|++|+|++|+++ .+|..++.+++|++|+|++|+|+ .+|..++.+++|+.|+|++|.++
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC
Confidence 555544 44444445555555555555555 44544555555555555555555 44555555555555555555543
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1e-17 Score=194.66 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=89.2
Q ss_pred cccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCC
Q 041908 394 GYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLH 473 (883)
Q Consensus 394 ~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 473 (883)
..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. | .+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCC
Confidence 34444444444444443 3332 2344444444444444444322 44455555555555555432 2 345555555
Q ss_pred EEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCc
Q 041908 474 ILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNS 553 (883)
Q Consensus 474 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 553 (883)
.|++++|.+.+ + ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 55555555553 2 2355555666666666655543 345555566666666666555544 5555566666666666
Q ss_pred cccccchhhhcCCCCCEEeccCCcCCc
Q 041908 554 LNGSIPSALFQSSQLMTLDLRDNEFSG 580 (883)
Q Consensus 554 l~~~~p~~~~~~~~L~~L~Ls~N~l~~ 580 (883)
+++. +.+..+++|+.|+|++|++++
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5532 245556666666666666554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.7e-17 Score=165.04 Aligned_cols=155 Identities=15% Similarity=0.218 Sum_probs=106.8
Q ss_pred hcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccccccccc
Q 041908 563 FQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWME 642 (883)
Q Consensus 563 ~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~ 642 (883)
..+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|+.|++++|++++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 44456666666666666 344 4666666666666666554 2345666777777777777766544433321
Q ss_pred CCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCccc
Q 041908 643 EGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGE 722 (883)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ 722 (883)
+++|+.|+|++|++++.
T Consensus 111 ---------------------------------------------------------------l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 111 ---------------------------------------------------------------LTSLTLLDISHSAHDDS 127 (197)
T ss_dssp ---------------------------------------------------------------CTTCCEEECCSSBCBGG
T ss_pred ---------------------------------------------------------------CCCCCEEEecCCccCcH
Confidence 45677888888888877
Q ss_pred CcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcc
Q 041908 723 IPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSG 793 (883)
Q Consensus 723 ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g 793 (883)
.|..++.+++|++|+|++|.+.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 88888888888888888887333556 58888888888888888886 34 67888888889988888765
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.5e-17 Score=173.38 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=128.4
Q ss_pred cCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEE
Q 041908 540 HSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIV 619 (883)
Q Consensus 540 ~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L 619 (883)
.+.++..+++++|.+++ ++ .+..+++|+.|++++|+++. +| .+..+++|++|++++|++++..| +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 34456667777777763 33 46677788888888888773 44 67778888888888888875433 7788888888
Q ss_pred EcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccc
Q 041908 620 DISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYE 699 (883)
Q Consensus 620 ~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (883)
++++|++++ +|..
T Consensus 91 ~L~~N~l~~-l~~~------------------------------------------------------------------ 103 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI------------------------------------------------------------------ 103 (263)
T ss_dssp ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred ECCCCccCC-cCcc------------------------------------------------------------------
Confidence 888888764 2210
Q ss_pred cccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCC
Q 041908 700 SYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN 779 (883)
Q Consensus 700 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~ 779 (883)
. .++|+.|+|++|++++ +| .++.+++|+.|+|++|++++. | .++.+++|+.|||++|++++. ..+..++
T Consensus 104 ----~-~~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~ 172 (263)
T 1xeu_A 104 ----P-SACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLK 172 (263)
T ss_dssp ----C-CSSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred ----c-cCcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCC
Confidence 0 1457888899998885 44 588888999999999998865 4 688889999999999999876 6788888
Q ss_pred CCcEEEccCCcCccc
Q 041908 780 YLAIFNVSYNDLSGP 794 (883)
Q Consensus 780 ~L~~l~ls~N~l~g~ 794 (883)
+|+.|++++|++++.
T Consensus 173 ~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 173 KVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCEEEEEEEEEECC
T ss_pred CCCEEeCCCCcccCC
Confidence 899999999988875
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.8e-17 Score=161.68 Aligned_cols=156 Identities=23% Similarity=0.303 Sum_probs=110.9
Q ss_pred CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCch-hhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCC
Q 041908 569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQ-QLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPF 647 (883)
Q Consensus 569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~-~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~ 647 (883)
+++++++|+++ .+|..+.. +|++|++++|++++..+. .+..+++|++|++++|++++..|..|..
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 56677777765 45654432 677777777777755553 3777778888888888877766655432
Q ss_pred CCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCcccc
Q 041908 648 NGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAI 727 (883)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 727 (883)
+++|+.|||++|+|++..|..|
T Consensus 77 ----------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~ 98 (192)
T 1w8a_A 77 ----------------------------------------------------------ASHIQELQLGENKIKEISNKMF 98 (192)
T ss_dssp ----------------------------------------------------------CTTCCEEECCSCCCCEECSSSS
T ss_pred ----------------------------------------------------------cccCCEEECCCCcCCccCHHHh
Confidence 4567888888888888888888
Q ss_pred cccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccCCC
Q 041908 728 GYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPTPN 797 (883)
Q Consensus 728 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 797 (883)
+++++|++|+|++|++++.+|..|+.+++|++|||++|++++..+...- ...++...+..+...|..|.
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGGCBBCSST
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCCCCCCCCCCCCh
Confidence 8899999999999999998899999999999999999999887653210 01122234445555555554
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=4.2e-18 Score=203.20 Aligned_cols=166 Identities=18% Similarity=0.213 Sum_probs=91.1
Q ss_pred CCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEe
Q 041908 445 MTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILD 524 (883)
Q Consensus 445 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 524 (883)
.+.++.|+|.+|.+... +. ..|+.++|+.|.+.+. ++..|.+. ..+..+..++.|+.|+
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~~--------------~~~~n~~~-~~~~~~~~l~~L~~L~ 230 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDED--------------DDIENRMV-MPKDSKYDDQLWHALD 230 (727)
T ss_dssp -----------------------------------------------------------------------CCCCCCEEE
T ss_pred CCccceEEeeCCCCCcc-hh-----hHhhcCccCcccccCc--------------ccccccee-cChhhhccCCCCcEEE
Confidence 35678899999888753 32 2356667776665532 23334443 4455666777777777
Q ss_pred cCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccc
Q 041908 525 ISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQG 604 (883)
Q Consensus 525 Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g 604 (883)
|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.++++|++|+|++|+|+ .+|..++.+++|++|+|++|.++
T Consensus 231 Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~- 306 (727)
T 4b8c_D 231 LSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT- 306 (727)
T ss_dssp CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-
T ss_pred CCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-
Confidence 7777776 44545557778888888888887 77888888888888888888888 67888888888888888888886
Q ss_pred cCchhhcCCCCCCEEEcCCCcCCCCCCcccc
Q 041908 605 NIPQQLCHLRKIAIVDISYNLLDGSIPSCFT 635 (883)
Q Consensus 605 ~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 635 (883)
.+|..|+.+++|+.|+|++|++++.+|..+.
T Consensus 307 ~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 307 TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 6787788888888888888888877776553
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=1.5e-16 Score=158.32 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=84.2
Q ss_pred CCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeec
Q 041908 470 PSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFL 549 (883)
Q Consensus 470 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L 549 (883)
++|++|++++|.+. .+| .+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44445555555444 333 34445555555555554332 224555555555555555555555555555666666666
Q ss_pred ccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCC
Q 041908 550 HNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 550 ~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
++|++++..|..+..+++|++|++++|++.+.+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 6666665556666666666666666666222344 46666666666666666664 33 5666677777777777654
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=7.7e-17 Score=168.02 Aligned_cols=168 Identities=22% Similarity=0.279 Sum_probs=92.6
Q ss_pred CCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecC
Q 041908 447 QLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDIS 526 (883)
Q Consensus 447 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 526 (883)
++..+++++|.+++.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|++++..+ +..+++|+.|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444445555544322 2344455555555555554 233 35555555555555555554333 5555555555555
Q ss_pred CCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccC
Q 041908 527 ENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNI 606 (883)
Q Consensus 527 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~ 606 (883)
+|++++..+ +.. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. | .+..+++|++|++++|++++.
T Consensus 94 ~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKNLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSCCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 555554322 111 566666666666654 22 456666666666666666643 2 456666666666666666654
Q ss_pred chhhcCCCCCCEEEcCCCcCCCC
Q 041908 607 PQQLCHLRKIAIVDISYNLLDGS 629 (883)
Q Consensus 607 p~~l~~l~~L~~L~ls~N~l~~~ 629 (883)
..+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 4566666666666666666544
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=156.50 Aligned_cols=93 Identities=24% Similarity=0.257 Sum_probs=78.9
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN 785 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ 785 (883)
+++|+.|||++|+|++..|..|.++++|++|+|++|+|++..|..|+.+++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45667788888888877777888899999999999999988888899999999999999999977777788999999999
Q ss_pred ccCCcCcccCCCC
Q 041908 786 VSYNDLSGPTPNT 798 (883)
Q Consensus 786 ls~N~l~g~ip~~ 798 (883)
+++|++.|.+...
T Consensus 133 L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 133 IGANPLYCDCNMQ 145 (193)
T ss_dssp CCSSCEECSGGGH
T ss_pred eCCCCeecCCcCH
Confidence 9999998866543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=1.8e-16 Score=171.48 Aligned_cols=285 Identities=12% Similarity=0.062 Sum_probs=127.1
Q ss_pred CCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCccEEEccCCccccccchhhhcC-------
Q 041908 299 QYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDLLHLVISNNNFIGMLPDNFGMI------- 371 (883)
Q Consensus 299 l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~------- 371 (883)
+.+++.|.++++- .+.-...+...+++|+.|+|++|.+.........++.+..+.+..+ .+|+..+..
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 4466777776542 1111122222267777777777777632222222222333444433 233333333
Q ss_pred -CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcc----cCCcCcccccCCC
Q 041908 372 -LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNY----FGGQIFPKYMSMT 446 (883)
Q Consensus 372 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~----l~~~~~~~~~~l~ 446 (883)
+++|+.|++.+ .++..-+..|.++++|+.+++++|.+. .++...|.++.++..+....+. ........|.++.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 66666666666 555444455666666666666666665 5555555555555555444321 1111122233333
Q ss_pred CCC-eEEccCcccCccccccc----cCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCccc
Q 041908 447 QLA-WLYLNDNQFTGRLEEGL----LNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVAR 521 (883)
Q Consensus 447 ~L~-~L~L~~n~l~~~~~~~~----~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 521 (883)
.|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+++++++|+++...+..|.+|++|+
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 443 22222211 111110 1123344444433311100111111245555555555555544444455555555
Q ss_pred EEecCCCcCcCccccccccCCCcC-eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEE
Q 041908 522 ILDISENKLYGPLEFSFNHSSSLW-HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRAL 595 (883)
Q Consensus 522 ~L~Ls~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 595 (883)
.+++.+| +....+.+|.++++|+ .+++.+ +++..-+.+|.+|++|+.+++++|+++...+..|.++++|+.+
T Consensus 254 ~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 254 KIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred EEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 5555554 4333344444554454 555444 3332333444444444444444444443333444444444444
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.4e-15 Score=146.94 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=61.1
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCC-CccccCcCCCCEEECCCCcccccCC---ccccCCCCC
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSI-PRSFSNLKMIESMDLSYNKLRGQIP---LELSELNYL 781 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~Lsg~ip---~~l~~l~~L 781 (883)
+++|+.|||++|++++.+|..++.+++|++|+|++|++++.. +..++.+++|+.||+++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 355666777777777666666666777777777777777542 2667777777777777777776554 466777777
Q ss_pred cEEEccCCcCcc
Q 041908 782 AIFNVSYNDLSG 793 (883)
Q Consensus 782 ~~l~ls~N~l~g 793 (883)
++|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 777777777654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=9.5e-16 Score=144.91 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=59.0
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcC-CCccccCcCCCCEEECCCCcccccCC---ccccCCCCC
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGS-IPRSFSNLKMIESMDLSYNKLRGQIP---LELSELNYL 781 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~Lsg~ip---~~l~~l~~L 781 (883)
+++|+.|||++|++++.+|..++.+++|++|+|++|++++. .|..++.+++|++||+++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 45566777777777766777777777777777777777763 34677777777777777777776655 467777777
Q ss_pred cEEEcc
Q 041908 782 AIFNVS 787 (883)
Q Consensus 782 ~~l~ls 787 (883)
+.||++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 777776
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=7.7e-15 Score=143.12 Aligned_cols=114 Identities=34% Similarity=0.374 Sum_probs=75.7
Q ss_pred CCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcC
Q 041908 112 TSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKL 191 (883)
Q Consensus 112 ~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l 191 (883)
++|++|++++|++.+ +|...+.++++|++|++++|.+.+..+ ..+..+++|++|++++|++
T Consensus 28 ~~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 28 SSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSQNQIQSLPD-----------------GVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTCSEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCCCCT-----------------TTTTTCTTCCEEECCSSCC
T ss_pred CCCcEEEeCCCcccE--eCHHHhcCcccccEEECCCCcceEeCh-----------------hHccCCCccCEEECCCCCc
Confidence 455666666666554 444455666666666666666654433 4456677777777777777
Q ss_pred CCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccC
Q 041908 192 DGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFS 245 (883)
Q Consensus 192 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~ 245 (883)
++..+..+..+++|++|++++|+++ .+|...+..+++|++|++++|.+.+..+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7665666677777777777777777 5664556777778888888887776554
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=4.1e-15 Score=145.08 Aligned_cols=92 Identities=23% Similarity=0.255 Sum_probs=75.9
Q ss_pred cccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEE
Q 041908 706 LEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFN 785 (883)
Q Consensus 706 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ 785 (883)
+++|+.|+|++|++++..+..++.+++|++|+|++|++++..+..++.+++|++|||++|++++..+..+..+++|+.|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 35677788888888766666678888899999999999887777788899999999999999876666678888999999
Q ss_pred ccCCcCcccCCC
Q 041908 786 VSYNDLSGPTPN 797 (883)
Q Consensus 786 ls~N~l~g~ip~ 797 (883)
+++|+++|.+|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 999999988774
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=143.61 Aligned_cols=129 Identities=22% Similarity=0.355 Sum_probs=105.7
Q ss_pred CEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCcccccccccccCCCCCC
Q 041908 569 MTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFN 648 (883)
Q Consensus 569 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~ 648 (883)
+++++++|+++ .+|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|.+++..|..|..
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 56777777777 4565443 57888888888887 67788888888888888888887665554432
Q ss_pred CcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccCCcCcccCccccc
Q 041908 649 GFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIG 728 (883)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 728 (883)
+++|+.|||++|+|++..|..|+
T Consensus 77 ---------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 77 ---------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp ---------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTT
T ss_pred ---------------------------------------------------------CCCCCEEECCCCccCEeCHHHhC
Confidence 46788999999999988888899
Q ss_pred ccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908 729 YLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770 (883)
Q Consensus 729 ~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ 770 (883)
.+++|++|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 999999999999999987777899999999999999999864
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=5e-15 Score=139.90 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=83.7
Q ss_pred CCCCEEECCCCcCC-CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908 494 SNLDVLLMSRNSLE-GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD 572 (883)
Q Consensus 494 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 572 (883)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44444455555555555555555544 4455666777777777777666677777777778888
Q ss_pred ccCCcCCcc-CCccccCCCCCcEEEccCCcccccCc---hhhcCCCCCCEEEcCC
Q 041908 573 LRDNEFSGN-IPPLINEDSNLRALLLRGNNLQGNIP---QQLCHLRKIAIVDISY 623 (883)
Q Consensus 573 Ls~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~~p---~~l~~l~~L~~L~ls~ 623 (883)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 877777753 34667777888888888888876555 4677788888887763
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=8.3e-15 Score=141.51 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=97.4
Q ss_pred CCCCEEECCCCcCC-CCCCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEe
Q 041908 494 SNLDVLLMSRNSLE-GDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLD 572 (883)
Q Consensus 494 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 572 (883)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 45555566666666677776666655 4566777888888888888776777777788888888
Q ss_pred ccCCcCCccC-CccccCCCCCcEEEccCCcccccCc---hhhcCCCCCCEEEcCCCcCC
Q 041908 573 LRDNEFSGNI-PPLINEDSNLRALLLRGNNLQGNIP---QQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 573 Ls~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~~p---~~l~~l~~L~~L~ls~N~l~ 627 (883)
+++|++++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888642 2677888888888888888886554 47888888888888888775
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.7e-15 Score=163.71 Aligned_cols=284 Identities=15% Similarity=0.134 Sum_probs=181.4
Q ss_pred CCCCcEEEcccccccc-cccCCCCCCCccEEEccCCccc--cccchhhhcCCCCCcEEeCCCCcCCCCCCccccc-----
Q 041908 324 NTKLEFLFLFNNFLKG-LLHLPDSKRDLLHLVISNNNFI--GMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGY----- 395 (883)
Q Consensus 324 l~~L~~L~L~~n~l~~-~~~~~~~~~~L~~L~ls~n~l~--~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~----- 395 (883)
+++++.|.++++--.. +..+...+++|++|+|++|++. ...+.. ++.++.+.+..|.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~----~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT----YPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS----SGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccc----ccccccccccccccC---HHHhccccccc
Confidence 4567888887642110 1111112677888888888776 221111 233444444444322 234555
Q ss_pred ---cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEccCccc----CccccccccC
Q 041908 396 ---TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYLNDNQF----TGRLEEGLLN 468 (883)
Q Consensus 396 ---l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~ 468 (883)
+++|+.|++.+ .++ .|+...|.+|++|+.+++++|.+....+..|..+.++..+.+..+.. .......|.+
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 78888888877 666 67777777788888888888777766666676666666665544221 1222334445
Q ss_pred CCCCC-EEEccCCccCCCcchhhh----CCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCC
Q 041908 469 APSLH-ILDVSNNMLSGQLPHWVG----NFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSS 543 (883)
Q Consensus 469 l~~L~-~L~ls~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 543 (883)
+..|+ .+.+... +.++..+. ...+++.+.+.++-...........+++|+.+++++|+++...+.+|.++++
T Consensus 175 ~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 175 GEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp SCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred ccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence 55555 4444332 22333222 2345666666554211111111123788999999999888777788999999
Q ss_pred cCeeecccCccccccchhhhcCCCCC-EEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEc
Q 041908 544 LWHLFLHNNSLNGSIPSALFQSSQLM-TLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDI 621 (883)
Q Consensus 544 L~~L~L~~n~l~~~~p~~~~~~~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~l 621 (883)
|+++++.+| ++..-+.+|.+|++|+ .+++.+ +++...+..|.+|++|+.+++++|+++..-+.+|.++++|+.++.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999888 6655567788999999 999988 777666788999999999999999998766778999999988763
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=1.5e-16 Score=158.48 Aligned_cols=154 Identities=21% Similarity=0.296 Sum_probs=100.2
Q ss_pred hcCCCCCEEeccCCcCCccCCc------cccCCCCCcEEEccCCcccccCchhhcCCCCCCEEEcCCCcCCCCCCccccc
Q 041908 563 FQSSQLMTLDLRDNEFSGNIPP------LINEDSNLRALLLRGNNLQGNIPQQLCHLRKIAIVDISYNLLDGSIPSCFTN 636 (883)
Q Consensus 563 ~~~~~L~~L~Ls~N~l~~~~p~------~l~~l~~L~~L~L~~N~l~g~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 636 (883)
.....++.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+.
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~- 90 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA- 90 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-
Confidence 3344555555555555555444 55666666666666666664 45 5666666666666666665 3332211
Q ss_pred ccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEEEccC
Q 041908 637 IWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGLDLSS 716 (883)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~ 716 (883)
.+++|+.|||++
T Consensus 91 --------------------------------------------------------------------~~~~L~~L~L~~ 102 (198)
T 1ds9_A 91 --------------------------------------------------------------------VADTLEELWISY 102 (198)
T ss_dssp --------------------------------------------------------------------HHHHCSEEEEEE
T ss_pred --------------------------------------------------------------------cCCcCCEEECcC
Confidence 135677788888
Q ss_pred CcCcccCcccccccccCCeeeCCCCcCCcCCC-ccccCcCCCCEEECCCCcccccCCcc----------ccCCCCCcEEE
Q 041908 717 NELTGEIPSAIGYLQELHALNLSHNHLSGSIP-RSFSNLKMIESMDLSYNKLRGQIPLE----------LSELNYLAIFN 785 (883)
Q Consensus 717 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~Lsg~ip~~----------l~~l~~L~~l~ 785 (883)
|++++ +| .++.+++|++|+|++|++++..+ ..++.+++|++|++++|++++.+|.. +..+++|+.||
T Consensus 103 N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 103 NQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88875 45 57788888888888888875433 46788888888888888888776653 67778888776
Q ss_pred ccCCcCc
Q 041908 786 VSYNDLS 792 (883)
Q Consensus 786 ls~N~l~ 792 (883)
+|.++
T Consensus 181 --~~~i~ 185 (198)
T 1ds9_A 181 --GMPVD 185 (198)
T ss_dssp --CGGGT
T ss_pred --CcccC
Confidence 45444
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=5.2e-16 Score=154.47 Aligned_cols=155 Identities=22% Similarity=0.209 Sum_probs=125.3
Q ss_pred ccCCCcCeeecccCccccccch------hhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908 539 NHSSSLWHLFLHNNSLNGSIPS------ALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCH 612 (883)
Q Consensus 539 ~~~~~L~~L~L~~n~l~~~~p~------~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~ 612 (883)
.....++.++++.+.++|.+|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445666666666666666665 89999999999999999986 67 8888999999999999998 68888888
Q ss_pred CCCCCEEEcCCCcCCCCCCcccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEE
Q 041908 613 LRKIAIVDISYNLLDGSIPSCFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKF 692 (883)
Q Consensus 613 l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 692 (883)
+++|+.|++++|++++ +| .+.
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~--------------------------------------------------------- 112 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIE--------------------------------------------------------- 112 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHH---------------------------------------------------------
T ss_pred CCcCCEEECcCCcCCc-CC-ccc---------------------------------------------------------
Confidence 8999999999999875 22 111
Q ss_pred eeccccccccccccccccEEEccCCcCcccCc-ccccccccCCeeeCCCCcCCcCCCcc----------ccCcCCCCEEE
Q 041908 693 MAKNRYESYKGGVLEYMTGLDLSSNELTGEIP-SAIGYLQELHALNLSHNHLSGSIPRS----------FSNLKMIESMD 761 (883)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~----------l~~l~~L~~Ld 761 (883)
.+++|+.|||++|++++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.||
T Consensus 113 ------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 ------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 14678999999999985433 47899999999999999999887764 88999999998
Q ss_pred CCCCcccc
Q 041908 762 LSYNKLRG 769 (883)
Q Consensus 762 Ls~N~Lsg 769 (883)
+|.++.
T Consensus 181 --~~~i~~ 186 (198)
T 1ds9_A 181 --GMPVDV 186 (198)
T ss_dssp --CGGGTT
T ss_pred --CcccCH
Confidence 777764
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=1.1e-12 Score=144.73 Aligned_cols=223 Identities=10% Similarity=0.089 Sum_probs=109.0
Q ss_pred CCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEEc
Q 041908 374 ELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLYL 453 (883)
Q Consensus 374 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 453 (883)
+|+.+.+.. .++..-+..|.++++|+.++++.|+++ .++...|. +.+|+.+.+..+ +...-...|.++++|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 455555554 344333445556666666666666555 55555443 455555555532 43333444555555555555
Q ss_pred cCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCc
Q 041908 454 NDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGP 533 (883)
Q Consensus 454 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 533 (883)
..+ ++..-..+|.+ .+|+.+.+. +.++..-..+|.+|++|+.+.+.+|.+.. +.....
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~~~I 291 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFND-------------------DPEAMI 291 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCC-------------------CTTCEE
T ss_pred CCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccC-------------------CcccEE
Confidence 543 33333334444 455666553 23332334455555555555555544430 000012
Q ss_pred cccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhcCC
Q 041908 534 LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLCHL 613 (883)
Q Consensus 534 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~l 613 (883)
.+.+|.+|++|+.+.+.+ .++..-..+|.+|++|+.++|..| ++..-+.+|.++ +|+.+++.+|.+....+..|.++
T Consensus 292 ~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 292 HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 233444555555555542 243333344555555555555433 443444555555 66666666665554444455555
Q ss_pred C-CCCEEEcCCCc
Q 041908 614 R-KIAIVDISYNL 625 (883)
Q Consensus 614 ~-~L~~L~ls~N~ 625 (883)
+ .++.+.+..+.
T Consensus 369 ~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 369 PDDITVIRVPAES 381 (401)
T ss_dssp CTTCCEEEECGGG
T ss_pred CCCccEEEeCHHH
Confidence 3 45566655543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=7.9e-13 Score=145.89 Aligned_cols=250 Identities=8% Similarity=0.010 Sum_probs=164.4
Q ss_pred CCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeEE
Q 041908 373 PELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWLY 452 (883)
Q Consensus 373 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 452 (883)
..++.+.+.++ ++..-...|.++ +|+.+.+..+ +. .|+...|.++ +|+.+.+.. .+.......|.++++|+.++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44444444432 222223334443 4555655544 33 4555545443 466666654 44444445566666677777
Q ss_pred ccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcC
Q 041908 453 LNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYG 532 (883)
Q Consensus 453 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 532 (883)
+.+|+++......|. +.+|+.+.+..+ +...-..+|.+|++|+.+++..+ ++......|.+ .+|+.+.+. +.+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 766666654444454 467777777644 44444566777777777777764 44444555666 678888883 44655
Q ss_pred ccccccccCCCcCeeecccCccc-----cccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCc
Q 041908 533 PLEFSFNHSSSLWHLFLHNNSLN-----GSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIP 607 (883)
Q Consensus 533 ~~~~~~~~~~~L~~L~L~~n~l~-----~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p 607 (883)
....+|.+|++|+.+++.+|.+. ..-+..|.+|++|+.+++. +.++..-...|.+|++|+.+.+..| ++..-+
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 56678888888999988887764 3446789999999999999 4577666788999999999999665 665557
Q ss_pred hhhcCCCCCCEEEcCCCcCCCCCCccccc
Q 041908 608 QQLCHLRKIAIVDISYNLLDGSIPSCFTN 636 (883)
Q Consensus 608 ~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 636 (883)
.+|.++ +|+.+++++|.+....+..|..
T Consensus 340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~ 367 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYG 367 (401)
T ss_dssp TSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred HhCCCC-CCCEEEEcCCCCcccccccccC
Confidence 789999 9999999999876554444443
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.4e-13 Score=132.90 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=96.6
Q ss_pred EEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908 691 KFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770 (883)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ 770 (883)
..+..+.+..++....+.++.|||++|+|++..|..|+.+++|++|+|++|+|++..|..|+.+++|++|||++|+|++.
T Consensus 14 l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~ 93 (170)
T 3g39_A 14 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93 (170)
T ss_dssp EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence 34455666667766678999999999999988899999999999999999999988888899999999999999999988
Q ss_pred CCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 771 IPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 771 ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
.|..+..+++|+.|++++|+++|.++..
T Consensus 94 ~~~~~~~l~~L~~L~L~~N~~~c~c~~l 121 (170)
T 3g39_A 94 PRGAFDNLKSLTHIWLLNNPWDCACSDI 121 (170)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCTTBGGG
T ss_pred CHHHhcCCCCCCEEEeCCCCCCCCchhH
Confidence 8888999999999999999999988744
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.7e-12 Score=142.30 Aligned_cols=142 Identities=14% Similarity=0.066 Sum_probs=78.7
Q ss_pred CCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccccCCCCCCeE
Q 041908 372 LPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKYMSMTQLAWL 451 (883)
Q Consensus 372 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 451 (883)
+..++.+.+..+... .....|..+..++.+...... ++...+.++.+|+.+.+..+ +..+-...|.++++|+.+
T Consensus 252 ~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i 325 (394)
T 4fs7_A 252 CTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI 325 (394)
T ss_dssp CSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence 555555555544332 333445555566655554432 33444556666666666543 333334456666666666
Q ss_pred EccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEE
Q 041908 452 YLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARIL 523 (883)
Q Consensus 452 ~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 523 (883)
++.++ ++..-..+|.++++|+.+++..+ ++..-..+|.+|++|+.+++..+ ++ .+..+|.++++|+.+
T Consensus 326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 66543 44444556667777777777655 44344556777777777777544 22 223456667766654
No 139
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=1.7e-12 Score=143.92 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=158.2
Q ss_pred CCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCccccChHhhhcCCCCcEEEccCcccccCCC
Q 041908 191 LDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRLQIETENF 270 (883)
Q Consensus 191 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 270 (883)
++..-..+|.++++|+.+.+..+ ++ .|+..+|.++++|+.+++..+ ++ .++...+.++++|+.+.+..+-......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecce
Confidence 44445567889999999999754 66 787788999999999999754 44 5666778888888877665432211111
Q ss_pred CCCCCccceEEEcccCcCCccCchhhhcCCCCCEEEccCCCCcCCcchHHHhcCCCCcEEEcccccccccccCCCCCCCc
Q 041908 271 PWLPRFQLKVLNLRRCNISGTIPSFLQYQYDLRYIDLSHNNLAGTFPTWLLQNNTKLEFLFLFNNFLKGLLHLPDSKRDL 350 (883)
Q Consensus 271 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~L 350 (883)
.+..+ .+....... .........|..+++|+.+.+.++.. .++...+.++++|+.+.+..+ ++
T Consensus 135 aF~~~-~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~------------ 197 (394)
T 4fs7_A 135 AFKGC-DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LK------------ 197 (394)
T ss_dssp TTTTC-CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CC------------
T ss_pred eeecc-cccccccCc-cccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ce------------
Confidence 22222 122221111 11112234455566666666654321 344444444555554444332 11
Q ss_pred cEEEccCCccccccchhhhcCCCCCcEEeCCCCcCCCCCCccccccCcccEEeccCCcccCccchhHhhCCCCCCEEEcc
Q 041908 351 LHLVISNNNFIGMLPDNFGMILPELVYLDMSQNSFEGSIPPSMGYTVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVS 430 (883)
Q Consensus 351 ~~L~ls~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 430 (883)
.++...+..+..|+.+.+..+... +........+|+.+.+.... . .+....+.++..++.+.+.
T Consensus 198 ------------~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~ 261 (394)
T 4fs7_A 198 ------------IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQ 261 (394)
T ss_dssp ------------EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEEC
T ss_pred ------------EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcC
Confidence 112222222444444444433221 12222233444544443321 1 2333333444444444444
Q ss_pred CcccCCcCcccccCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCC
Q 041908 431 HNYFGGQIFPKYMSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDV 510 (883)
Q Consensus 431 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 510 (883)
.+.. . .....|..+..++.+....+.+. ..+|..+.+|+.+.+..+ ++...
T Consensus 262 ~~~~------------------------~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~ 312 (394)
T 4fs7_A 262 NNKL------------------------R-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIG 312 (394)
T ss_dssp CTTC------------------------E-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEEC
T ss_pred CCcc------------------------e-eeccccccccccceeccCceeec---cccccccccccccccccc-cceec
Confidence 3321 1 22223333444444444333221 123444444444444332 33233
Q ss_pred CccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCC
Q 041908 511 SVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDS 590 (883)
Q Consensus 511 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~ 590 (883)
..+|.++.+|+.+++.++ ++.....+|.+|++|+.+.+..+ ++..-..+|.+|++|+.+++..+ ++ .+...|.+++
T Consensus 313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~ 388 (394)
T 4fs7_A 313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTT 388 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTC
T ss_pred hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCC
Confidence 334455555555555432 33333445555555666655544 43333445666666666666543 12 2234555666
Q ss_pred CCcE
Q 041908 591 NLRA 594 (883)
Q Consensus 591 ~L~~ 594 (883)
+|+.
T Consensus 389 ~L~~ 392 (394)
T 4fs7_A 389 KFKW 392 (394)
T ss_dssp EEEE
T ss_pred CCcE
Confidence 6554
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.5e-13 Score=132.15 Aligned_cols=130 Identities=16% Similarity=0.101 Sum_probs=79.0
Q ss_pred CCCCCCEEECCCCcCCCCCCccccCCC-cccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhhhcCCCCCE
Q 041908 492 NFSNLDVLLMSRNSLEGDVSVPLSNLQ-VARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSSQLMT 570 (883)
Q Consensus 492 ~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 570 (883)
++.+|++|++++|+++.. +. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 344444444444444422 22 22222 555555555555443 34555666666666666666443344567777777
Q ss_pred EeccCCcCCccCCc--cccCCCCCcEEEccCCcccccCchh----hcCCCCCCEEEcCCCcCC
Q 041908 571 LDLRDNEFSGNIPP--LINEDSNLRALLLRGNNLQGNIPQQ----LCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 571 L~Ls~N~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~~p~~----l~~l~~L~~L~ls~N~l~ 627 (883)
|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||++.|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777777775 3454 6777778888888888877 45553 777888888888877653
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=3.3e-13 Score=130.70 Aligned_cols=108 Identities=20% Similarity=0.207 Sum_probs=95.5
Q ss_pred EEeeccccccccccccccccEEEccCCcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccccc
Q 041908 691 KFMAKNRYESYKGGVLEYMTGLDLSSNELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQ 770 (883)
Q Consensus 691 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ 770 (883)
..+..+.+..++....+.|+.|+|++|+|++.+|..|+++++|++|+|++|+|++..+..|+++++|++|||++|+|++.
T Consensus 17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l 96 (174)
T 2r9u_A 17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96 (174)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence 34555666677777778999999999999998899999999999999999999987777789999999999999999987
Q ss_pred CCccccCCCCCcEEEccCCcCcccCCCC
Q 041908 771 IPLELSELNYLAIFNVSYNDLSGPTPNT 798 (883)
Q Consensus 771 ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 798 (883)
.|..+..+++|+.|++++|++.+.++.-
T Consensus 97 ~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 97 PRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred CHHHhccccCCCEEEeCCCCcccccccH
Confidence 7777999999999999999999876643
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3e-13 Score=131.59 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=82.7
Q ss_pred cCCCCCCEEEccCCccCCCcchhhhCC-CCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcC
Q 041908 467 LNAPSLHILDVSNNMLSGQLPHWVGNF-SNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLW 545 (883)
Q Consensus 467 ~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 545 (883)
..+++|+.|++++|.++ .+|. +..+ ++|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 34455566666666555 2333 3333 3666666666666653 4566666677777777766654444446667777
Q ss_pred eeecccCccccccch--hhhcCCCCCEEeccCCcCCccCCcc----ccCCCCCcEEEccCCccc
Q 041908 546 HLFLHNNSLNGSIPS--ALFQSSQLMTLDLRDNEFSGNIPPL----INEDSNLRALLLRGNNLQ 603 (883)
Q Consensus 546 ~L~L~~n~l~~~~p~--~~~~~~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~N~l~ 603 (883)
+|++++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|++|++++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777774 4554 6677777777777777776 34553 677777888888777665
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=8e-12 Score=120.48 Aligned_cols=88 Identities=30% Similarity=0.332 Sum_probs=56.3
Q ss_pred CCCCEEECCCCCCCCccccccccchhhcccccchhhhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 041908 138 RNLEVLDLSGNGLIGSLTMQGEKLELLNNKCREMNARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSG 217 (883)
Q Consensus 138 ~~L~~L~Ls~n~l~~~~~~~l~~L~~~~n~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 217 (883)
++|++|+|++|.+.+..| ..+..+++|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus 30 ~~l~~L~L~~N~i~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~- 91 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEP-----------------GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK- 91 (170)
T ss_dssp TTCSEEECCSSCCCCCCT-----------------TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCcEEEcCCCcCCccCh-----------------hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC-
Confidence 555666666665555444 45566666666666666666555555666777777777777776
Q ss_pred ccChhhhcCCCCCCEEeccCCcCccc
Q 041908 218 NLPISVFANLTSLEYLSLSGNNFQGS 243 (883)
Q Consensus 218 ~ip~~~~~~l~~L~~L~L~~n~l~g~ 243 (883)
.+|...|.++++|++|++++|.++..
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 45535567777777777777776644
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.5e-11 Score=119.05 Aligned_cols=68 Identities=34% Similarity=0.430 Sum_probs=40.1
Q ss_pred hhhcCCCCCCEEEccCCcCCCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccCCcCc
Q 041908 173 ARICELKNLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSGNNFQ 241 (883)
Q Consensus 173 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 241 (883)
..+..+++|++|+|++|++++..+..|.++++|++|+|++|+++ .+|...|..+++|++|++++|.+.
T Consensus 51 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 51 GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred HHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 44555555666666666655444444556666666666666666 455344666666666666666665
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.3e-11 Score=134.49 Aligned_cols=90 Identities=22% Similarity=0.206 Sum_probs=82.7
Q ss_pred cccccEEEccC-CcCcccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEE
Q 041908 706 LEYMTGLDLSS-NELTGEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIF 784 (883)
Q Consensus 706 l~~L~~LdLs~-N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l 784 (883)
+++|+.|||++ |+|++..|..|++|++|+.|+|++|+|++.+|..|++|++|+.|||++|+|++..|..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 46789999996 999988889999999999999999999999999999999999999999999987777777776 9999
Q ss_pred EccCCcCcccCC
Q 041908 785 NVSYNDLSGPTP 796 (883)
Q Consensus 785 ~ls~N~l~g~ip 796 (883)
++++|++.+.+.
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999998765
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=1.9e-12 Score=141.40 Aligned_cols=135 Identities=20% Similarity=0.145 Sum_probs=61.0
Q ss_pred CCCCCeEEccCcccCccccccc----c-CCCCCCEEEccCCccCCCcchhh-hCCCCCCEEECCCCcCCCCCCccc----
Q 041908 445 MTQLAWLYLNDNQFTGRLEEGL----L-NAPSLHILDVSNNMLSGQLPHWV-GNFSNLDVLLMSRNSLEGDVSVPL---- 514 (883)
Q Consensus 445 l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~l---- 514 (883)
++.|+.|++++|.++......+ . ..++|++|++++|.++......+ ..+++|++|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3456677777777664332222 2 12466666666666653222222 223455566666665543222222
Q ss_pred -cCCCcccEEecCCCcCcCc----cccccccCCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCC
Q 041908 515 -SNLQVARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFS 579 (883)
Q Consensus 515 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~ 579 (883)
...++|+.|+|++|.++.. ++..+...++|++|+|++|.+++. ++..+..+++|++|+|++|.++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1234455555555554331 112223344444444444444322 1233333444444444444444
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.19 E-value=8.5e-10 Score=122.10 Aligned_cols=109 Identities=12% Similarity=0.177 Sum_probs=71.9
Q ss_pred hhhcCCC-CCCEEEccCCcCCCCCCccccCCCCCCEEEccCCc---cccccChhhhcCCCCCCEEeccCCcCccccChHh
Q 041908 173 ARICELK-NLVELNLSWNKLDGSLPQCLSNLTYLRVLDLTSNQ---LSGNLPISVFANLTSLEYLSLSGNNFQGSFSLSV 248 (883)
Q Consensus 173 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~---l~~~ip~~~~~~l~~L~~L~L~~n~l~g~~~~~~ 248 (883)
.+|.+++ .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++ .|+..+|.++.+|+.+.+..+ ++ .++...
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~a 132 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT-EIDSEA 132 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS-EECTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc-eehhhh
Confidence 4566664 5888888754 665667788888889888887763 55 677678888888888777554 33 455567
Q ss_pred hhcCCCCcEEEccCcccccCCCCCCCCccceEEEccc
Q 041908 249 LANHSRLEVLQISRLQIETENFPWLPRFQLKVLNLRR 285 (883)
Q Consensus 249 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~ 285 (883)
+..+.+|+.+.+...........+..+..|+.+.+..
T Consensus 133 F~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhcccccccccceeeeecccceecccccccccccc
Confidence 7778888887776543333333344444555555543
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=1.3e-09 Score=120.71 Aligned_cols=44 Identities=16% Similarity=0.227 Sum_probs=30.2
Q ss_pred ccChhhhcCCC-CCCEEeccCCcCccccChHhhhcCCCCcEEEccCc
Q 041908 218 NLPISVFANLT-SLEYLSLSGNNFQGSFSLSVLANHSRLEVLQISRL 263 (883)
Q Consensus 218 ~ip~~~~~~l~-~L~~L~L~~n~l~g~~~~~~l~~l~~L~~L~L~~~ 263 (883)
.|+..+|.++. .|+.+.+-.+ ++ .|....|.++++|+.+.+..+
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n 97 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDN 97 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGG
T ss_pred EcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCC
Confidence 56667787774 5888887543 44 566677777787777776554
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.5e-12 Score=142.20 Aligned_cols=187 Identities=15% Similarity=0.079 Sum_probs=79.2
Q ss_pred CCCcEEeCCCCcCCCCCCccccc-----cCcccEEeccCCcccCccchhHhhCCCCCCEEEccCcccCCcCcccc-----
Q 041908 373 PELVYLDMSQNSFEGSIPPSMGY-----TVRLLFLDLSSNNFSGELPKQFLTGCVSLAFMNVSHNYFGGQIFPKY----- 442 (883)
Q Consensus 373 ~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----- 442 (883)
+.|+.|++++|.++......+.. .++|++|+|++|.++......+...+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45566666666555322222221 14566666666655433233333333444555555554433222211
Q ss_pred cCCCCCCeEEccCcccCccccccccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCC----CCccccCCC
Q 041908 443 MSMTQLAWLYLNDNQFTGRLEEGLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQ 518 (883)
Q Consensus 443 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~ 518 (883)
...++|++|+|++|.++..... .++..+..+++|++|+|++|.++.. ++..+...+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 1123344444444444321100 1222233344444444444444321 122333444
Q ss_pred cccEEecCCCcCcCc----cccccccCCCcCeeecccCccccccchhhhcCC-----CCCEEe--ccCCcCC
Q 041908 519 VARILDISENKLYGP----LEFSFNHSSSLWHLFLHNNSLNGSIPSALFQSS-----QLMTLD--LRDNEFS 579 (883)
Q Consensus 519 ~L~~L~Ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~-----~L~~L~--Ls~N~l~ 579 (883)
+|+.|+|++|.+++. +...+...++|++|+|++|.++......+.... .|+.+. +..|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 555555555555432 222233445666666666666544444443331 155665 5555554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=5.3e-11 Score=129.49 Aligned_cols=106 Identities=22% Similarity=0.254 Sum_probs=91.2
Q ss_pred cEEEccCC-cCcccCcccccccccCCeeeCCC-CcCCcCCCccccCcCCCCEEECCCCcccccCCccccCCCCCcEEEcc
Q 041908 710 TGLDLSSN-ELTGEIPSAIGYLQELHALNLSH-NHLSGSIPRSFSNLKMIESMDLSYNKLRGQIPLELSELNYLAIFNVS 787 (883)
Q Consensus 710 ~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls 787 (883)
..+|++++ +|+ .||. |+.+++|+.|+|++ |+|++..|..|++|++|+.|||++|+|++.+|..|.+|++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35799998 899 6888 99999999999996 99999988999999999999999999999999999999999999999
Q ss_pred CCcCcccCCCCccCCCCCCcccCCCcCCCC
Q 041908 788 YNDLSGPTPNTKQFANFDESNYRGNLNLCG 817 (883)
Q Consensus 788 ~N~l~g~ip~~~~~~~~~~~~~~gn~~lc~ 817 (883)
+|+|++..|.......+....+.+|+.-|.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 999998655443333355556678887775
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=8.6e-10 Score=119.23 Aligned_cols=167 Identities=14% Similarity=0.188 Sum_probs=112.2
Q ss_pred ccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEccCCcccccCchhhc--CCCCCCEEEcCCC--cCCCCCCc
Q 041908 557 SIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLLRGNNLQGNIPQQLC--HLRKIAIVDISYN--LLDGSIPS 632 (883)
Q Consensus 557 ~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~--~l~~L~~L~ls~N--~l~~~~p~ 632 (883)
.+...+..+++|+.|+|++|.-. .++. +. +++|+.|++..|.+.......++ .+++|+.|+|+.+ ...+...
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~- 238 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD- 238 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC-
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchh-
Confidence 45567778899999999887311 2333 33 78999999999888755445554 7899999998642 2211100
Q ss_pred ccccccccccCCCCCCCcccccccccccccchhhhccccccccccCCChhhhcceeEEEEeeccccccccccccccccEE
Q 041908 633 CFTNIWPWMEEGDPFNGFVFGYTLVVEHFPAISAYYNSTLNLIFSGEDNRELRQRVEVKFMAKNRYESYKGGVLEYMTGL 712 (883)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 712 (883)
+..+. ..+.+..+++|+.|
T Consensus 239 -~~~l~------------------------------------------------------------~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 239 -MNVFR------------------------------------------------------------PLFSKDRFPNLKWL 257 (362)
T ss_dssp -GGGTG------------------------------------------------------------GGSCTTTCTTCCEE
T ss_pred -HHHHH------------------------------------------------------------HHHhcCCCCCcCEE
Confidence 00000 00111236789999
Q ss_pred EccCCcCcccCccccc---ccccCCeeeCCCCcCCcC----CCccccCcCCCCEEECCCCcccccCCccccC-CCCCcEE
Q 041908 713 DLSSNELTGEIPSAIG---YLQELHALNLSHNHLSGS----IPRSFSNLKMIESMDLSYNKLRGQIPLELSE-LNYLAIF 784 (883)
Q Consensus 713 dLs~N~l~g~ip~~l~---~l~~L~~L~Ls~N~l~g~----ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~-l~~L~~l 784 (883)
+|++|.+.+..+..+. .+++|++|+||+|.+++. ++..+.++++|+.|||++|.++...-..+.. + ...+
T Consensus 258 ~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~ 335 (362)
T 2ra8_A 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKI 335 (362)
T ss_dssp EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEE
T ss_pred eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEE
Confidence 9999999866554443 588999999999999874 4555677899999999999987543333432 2 3567
Q ss_pred EccCCc
Q 041908 785 NVSYND 790 (883)
Q Consensus 785 ~ls~N~ 790 (883)
++++|+
T Consensus 336 ~~~~~~ 341 (362)
T 2ra8_A 336 DVSDSQ 341 (362)
T ss_dssp ECCSBC
T ss_pred EecCCc
Confidence 888776
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.91 E-value=6e-08 Score=106.60 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=45.9
Q ss_pred cccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCc
Q 041908 465 GLLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSL 544 (883)
Q Consensus 465 ~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L 544 (883)
+|.++.+|+.+.+..+ +......+|.+|++|+.+.+.++.++......|.+|.+|+.+++..+ ++.....+|.+|++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3444444444444332 22122234455555555555555444444445555555555555433 333334456666666
Q ss_pred CeeecccCccccccchhhhcC
Q 041908 545 WHLFLHNNSLNGSIPSALFQS 565 (883)
Q Consensus 545 ~~L~L~~n~l~~~~p~~~~~~ 565 (883)
+.+.+..+ ++..-..+|.++
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTS
T ss_pred CEEEECCc-cCEEchhHhhCC
Confidence 66666443 332233445444
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.87 E-value=1.1e-07 Score=104.57 Aligned_cols=128 Identities=12% Similarity=0.118 Sum_probs=53.8
Q ss_pred ccCCCCCCEEEccCCccCCCcchhhhCCCCCCEEECCCCcCCCCCCccccCCCcccEEecCCCcCcCccccccccCCCcC
Q 041908 466 LLNAPSLHILDVSNNMLSGQLPHWVGNFSNLDVLLMSRNSLEGDVSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLW 545 (883)
Q Consensus 466 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 545 (883)
+..+..|+.+.+..+ +......++.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +......+|.++++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444555544333 11122333444555555554433 32223334444445555544332 2222233444444555
Q ss_pred eeecccCccccccchhhhcCCCCCEEeccCCcCCccCCccccCCCCCcEEEc
Q 041908 546 HLFLHNNSLNGSIPSALFQSSQLMTLDLRDNEFSGNIPPLINEDSNLRALLL 597 (883)
Q Consensus 546 ~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 597 (883)
.+.+.++.++..-..+|.+|.+|+.++|..+ ++..-..+|.+|++|+.+.+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 5555444444333334444455555554332 33222334444444444444
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=5.9e-09 Score=112.68 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=56.3
Q ss_pred cCCCcCeeecccCccccccchhhh---cCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCCcccccCchhhcC
Q 041908 540 HSSSLWHLFLHNNSLNGSIPSALF---QSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGNNLQGNIPQQLCH 612 (883)
Q Consensus 540 ~~~~L~~L~L~~n~l~~~~p~~~~---~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~~p~~l~~ 612 (883)
.+++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467888888888887755444444 356788888888888764 3344456788888888888877544444443
Q ss_pred -CCCCCEEEcCCCc
Q 041908 613 -LRKIAIVDISYNL 625 (883)
Q Consensus 613 -l~~L~~L~ls~N~ 625 (883)
+ ...++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3557777765
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=1.5e-07 Score=96.30 Aligned_cols=66 Identities=26% Similarity=0.317 Sum_probs=34.0
Q ss_pred ccccCCeeeCCCCcCCc--CCCccccCcCCCCEEECCCCcccccCCccccCCC--CCcEEEccCCcCcccCC
Q 041908 729 YLQELHALNLSHNHLSG--SIPRSFSNLKMIESMDLSYNKLRGQIPLELSELN--YLAIFNVSYNDLSGPTP 796 (883)
Q Consensus 729 ~l~~L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~Lsg~ip~~l~~l~--~L~~l~ls~N~l~g~ip 796 (883)
+++.|++|+||+|+|++ .+|..++.+++|+.|||++|+|++. .++..+. .|+.|++++|++++.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 44555555555555555 3344455555555555555555543 2222232 55555555555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=9e-08 Score=97.88 Aligned_cols=80 Identities=25% Similarity=0.273 Sum_probs=67.7
Q ss_pred ccccccEEEccCCcCcc--cCcccccccccCCeeeCCCCcCCcCCCccccCcC--CCCEEECCCCcccccCCc-------
Q 041908 705 VLEYMTGLDLSSNELTG--EIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLK--MIESMDLSYNKLRGQIPL------- 773 (883)
Q Consensus 705 ~l~~L~~LdLs~N~l~g--~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~Lsg~ip~------- 773 (883)
.++.|+.||||+|+|++ .+|..++.+++|+.|+|++|+|++. ..+..++ +|+.|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47899999999999998 5677888999999999999999976 4466666 999999999999998873
Q ss_pred cccCCCCCcEEEc
Q 041908 774 ELSELNYLAIFNV 786 (883)
Q Consensus 774 ~l~~l~~L~~l~l 786 (883)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3677888888763
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.34 E-value=2.4e-07 Score=90.18 Aligned_cols=120 Identities=15% Similarity=0.224 Sum_probs=65.1
Q ss_pred hhhhCCCCCCEEECCCC-cCCCC----CCccccCCCcccEEecCCCcCcCccccccccCCCcCeeecccCccccccchhh
Q 041908 488 HWVGNFSNLDVLLMSRN-SLEGD----VSVPLSNLQVARILDISENKLYGPLEFSFNHSSSLWHLFLHNNSLNGSIPSAL 562 (883)
Q Consensus 488 ~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 562 (883)
..+...+.|++|+|++| .+... +...+...++|++|+|++|.+...... .+...+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~--------------------~l~~~L 89 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAF--------------------ALAEML 89 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHH--------------------HHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHH--------------------HHHHHH
Confidence 34555666677776666 55432 122233344445555554444321111 123344
Q ss_pred hcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEc--cCCccccc----CchhhcCCCCCCEEEcCCCcCC
Q 041908 563 FQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLL--RGNNLQGN----IPQQLCHLRKIAIVDISYNLLD 627 (883)
Q Consensus 563 ~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L--~~N~l~g~----~p~~l~~l~~L~~L~ls~N~l~ 627 (883)
...++|++|+|++|.|++. +...+...++|++|+| ++|.+... +...+...++|+.|++++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4456666666666666643 3344555666777777 66776643 3344555677888888777663
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.31 E-value=2.2e-07 Score=90.38 Aligned_cols=114 Identities=14% Similarity=0.158 Sum_probs=54.4
Q ss_pred cccCCCCCCEEEccCC-ccCCC----cchhhhCCCCCCEEECCCCcCCCC----CCccccCCCcccEEecCCCcCcCc--
Q 041908 465 GLLNAPSLHILDVSNN-MLSGQ----LPHWVGNFSNLDVLLMSRNSLEGD----VSVPLSNLQVARILDISENKLYGP-- 533 (883)
Q Consensus 465 ~~~~l~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~-- 533 (883)
.+...+.|++|++++| .+... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444556666666665 55421 233444556666666666666532 122233345555666666555432
Q ss_pred --cccccccCCCcCeeec--ccCccccc----cchhhhcCCCCCEEeccCCcC
Q 041908 534 --LEFSFNHSSSLWHLFL--HNNSLNGS----IPSALFQSSQLMTLDLRDNEF 578 (883)
Q Consensus 534 --~~~~~~~~~~L~~L~L--~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l 578 (883)
+...+...++|++|+| ++|.++.. +...+...++|++|+|++|.+
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 1223333444555555 44554432 222333344455555555544
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=2.3e-05 Score=74.12 Aligned_cols=33 Identities=6% Similarity=-0.068 Sum_probs=14.1
Q ss_pred ccEEecCCCcCcCccccccccCCCcCeeecccC
Q 041908 520 ARILDISENKLYGPLEFSFNHSSSLWHLFLHNN 552 (883)
Q Consensus 520 L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~L~~n 552 (883)
|+.||++++.++..--..+..+++|++|+|++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 444444444443332233344444444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.53 E-value=2.9e-05 Score=73.37 Aligned_cols=84 Identities=6% Similarity=-0.040 Sum_probs=69.4
Q ss_pred CCcCeeecccCccccccchhhhcCCCCCEEeccCCc-CCccCCccccCC----CCCcEEEccCCc-ccccCchhhcCCCC
Q 041908 542 SSLWHLFLHNNSLNGSIPSALFQSSQLMTLDLRDNE-FSGNIPPLINED----SNLRALLLRGNN-LQGNIPQQLCHLRK 615 (883)
Q Consensus 542 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~g~~p~~l~~l~~ 615 (883)
..|+.||+++|.++..--..+..+++|+.|+|++|. +++.--..++.+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 489999999999987766778899999999999995 776544455554 479999999985 87655566888999
Q ss_pred CCEEEcCCCc
Q 041908 616 IAIVDISYNL 625 (883)
Q Consensus 616 L~~L~ls~N~ 625 (883)
|+.|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999985
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.01 E-value=0.00096 Score=60.01 Aligned_cols=40 Identities=20% Similarity=0.078 Sum_probs=23.2
Q ss_pred CCCEEECCCCcccccCCccccCCCCCcEEEccCCcCcccC
Q 041908 756 MIESMDLSYNKLRGQIPLELSELNYLAIFNVSYNDLSGPT 795 (883)
Q Consensus 756 ~L~~LdLs~N~Lsg~ip~~l~~l~~L~~l~ls~N~l~g~i 795 (883)
+|+.|||++|+|+...+..|..+++|+.|+|++|++.+.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 3555566666665544455556666666666666666533
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00051 Score=66.15 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCcCeeecccCccccc----cchhhhcCCCCCEEeccCCcCCcc----CCccccCCCCCcEEEccCC---cccc----c
Q 041908 541 SSSLWHLFLHNNSLNGS----IPSALFQSSQLMTLDLRDNEFSGN----IPPLINEDSNLRALLLRGN---NLQG----N 605 (883)
Q Consensus 541 ~~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~L~~N---~l~g----~ 605 (883)
-+.|+.|+|++|.+... +...+...+.|+.|+|++|.|++. +-..+...+.|++|+|++| .+.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 34555555555555422 334455556777777777777643 2233445566777887754 3332 2
Q ss_pred CchhhcCCCCCCEEEcCCCcC
Q 041908 606 IPQQLCHLRKIAIVDISYNLL 626 (883)
Q Consensus 606 ~p~~l~~l~~L~~L~ls~N~l 626 (883)
+.+.+..-+.|+.|+++.|..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 345566677888888876643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0011 Score=59.51 Aligned_cols=57 Identities=26% Similarity=0.345 Sum_probs=48.8
Q ss_pred cEEEccCCcCc-ccCcccccccccCCeeeCCCCcCCcCCCccccCcCCCCEEECCCCccc
Q 041908 710 TGLDLSSNELT-GEIPSAIGYLQELHALNLSHNHLSGSIPRSFSNLKMIESMDLSYNKLR 768 (883)
Q Consensus 710 ~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~Ls 768 (883)
+.+|.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46999999997 46776543 46899999999999888888999999999999999886
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.84 E-value=0.00067 Score=65.30 Aligned_cols=18 Identities=6% Similarity=0.241 Sum_probs=8.1
Q ss_pred hhCCCCCCEEECCCCcCC
Q 041908 490 VGNFSNLDVLLMSRNSLE 507 (883)
Q Consensus 490 ~~~l~~L~~L~L~~n~l~ 507 (883)
+..-+.|+.|+|++|++.
T Consensus 66 L~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HTTCSCCCEEECTTSCCB
T ss_pred HhhCCCcCEEEccCCCCC
Confidence 333344444444444443
No 165
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.52 E-value=17 Score=24.91 Aligned_cols=24 Identities=4% Similarity=-0.125 Sum_probs=8.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccc
Q 041908 851 WSFAVSYVTVIVGLLALLFLNSYW 874 (883)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~ 874 (883)
.++..|.++++.++.+..++.|+.
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehHHHHHHHHHHHHHHHHhhhh
Confidence 334333333333333333333333
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=46.27 E-value=15 Score=25.22 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHHHHHHHhhccc
Q 041908 853 FAVSYVTVIVGLLALLFLNSYW 874 (883)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~ 874 (883)
+..|.++++.++++..++.|+.
T Consensus 17 VVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 3333333333333333444433
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.53 E-value=43 Score=27.61 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=20.8
Q ss_pred CCCccccCCCCCCEEEccCCccccccChhhhcCCCCCCEEeccC
Q 041908 194 SLPQCLSNLTYLRVLDLTSNQLSGNLPISVFANLTSLEYLSLSG 237 (883)
Q Consensus 194 ~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~ 237 (883)
.-..+|.++++|+.+.+-.+ ++ .|...+|.++.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33344555555555555443 22 34444555555555555543
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.10 E-value=54 Score=22.41 Aligned_cols=6 Identities=0% Similarity=0.213 Sum_probs=2.4
Q ss_pred HHHhhc
Q 041908 867 LLFLNS 872 (883)
Q Consensus 867 ~~~~~~ 872 (883)
+++++|
T Consensus 32 ~~~~RR 37 (44)
T 2jwa_A 32 GILIKR 37 (44)
T ss_dssp HHHHHH
T ss_pred Hhheeh
Confidence 334443
No 169
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=30.23 E-value=31 Score=21.77 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=12.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhc
Q 041908 851 WSFAVSYVTVIVGLLALLFLNS 872 (883)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~ 872 (883)
..+.+|.+++|.++...+.+.|
T Consensus 10 lt~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEc
Confidence 3455666666666655444444
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=24.71 E-value=45 Score=22.22 Aligned_cols=10 Identities=30% Similarity=0.032 Sum_probs=4.1
Q ss_pred hhhhhhhhHH
Q 041908 850 NWSFAVSYVT 859 (883)
Q Consensus 850 ~~~~~~~~~~ 859 (883)
..++++|++.
T Consensus 16 ~~~vv~Gv~l 25 (41)
T 2k9y_A 16 IGGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EeehhHHHHH
Confidence 3344444443
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.05 E-value=87 Score=25.73 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=30.8
Q ss_pred CCCCCchhhcCCCCCCEEeCCCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q 041908 100 FSESLVPLLTSLTSLTSLFLEGNNLGVGFKPMKVLPNLRNLEVLDLSGN 148 (883)
Q Consensus 100 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ip~~~l~~l~~L~~L~Ls~n 148 (883)
+...-...|.+|++|+.+.+-.+- +. |...+|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v-~~--Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI-GL--LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS-SC--CCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCch-he--EcHHHHhccCCccEEEEcCC
Confidence 334445567778888888876652 22 44568888888888887654
No 172
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=22.36 E-value=45 Score=19.50 Aligned_cols=19 Identities=26% Similarity=0.863 Sum_probs=12.6
Q ss_pred ccCCCCCCCCCCCCcccee
Q 041908 54 ILVSWVDNRTSDCCSWERI 72 (883)
Q Consensus 54 ~l~sW~~~~~~~cc~w~gv 72 (883)
.+.-|.-.....||.|.-.
T Consensus 3 kltfw~ck~~keccgwn~c 21 (29)
T 2gx1_A 3 KLTFWKCKNKKECCGWNAC 21 (29)
T ss_dssp BCSSSCCSSTTSBSSCCCB
T ss_pred EeEEEEecCCccccccccc
Confidence 3556854445789999843
Done!