BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041910
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 23/165 (13%)
Query: 46 TIPQNRMPDAINGGHLVFKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKD 105
T+ +R P A G L+ RP++ +F+ +E +++ IWS+ R ++ + D
Sbjct: 150 TLFDHRSP-AETGTELM--RPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVASND 206
Query: 106 --KLLFVWDQEECTDSGFKSLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDN 162
K++F D + S+ ++ + K L +W +N S+T++ DD
Sbjct: 207 NYKVMFYLDS-----TAMISVHVPERGVVDVKPLGVIWALYK-----QYNSSNTIMFDDI 256
Query: 163 PYKALLNPPN---TSIFPEAYNPEDVNDKVLKPNGELAKYLEGLA 204
L+NP + F +A+ + ++LK L+ YL +A
Sbjct: 257 RRNFLMNPKSGLKIRPFRQAHLNRGTDTELLK----LSDYLRKIA 297
>pdb|1H4J|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|E Chain E, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
pdb|1H4J|G Chain G, Methylobacterium Extorquens Methanol Dehydrogenase D303e
Mutant
Length = 599
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 DDYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQNRMPDAINGGH 60
D++E A N++ LS K G +KLL +V+ R + A + N++ D +N
Sbjct: 300 DEWEYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN--- 356
Query: 61 LVFK 64
VFK
Sbjct: 357 -VFK 359
>pdb|1W6S|A Chain A, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
pdb|1W6S|C Chain C, The High Resolution Structure Of Methanol Dehydrogenase
From Methylobacterium Extorquens
Length = 599
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 DDYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQNRMPDAINGGH 60
D+++ A N++ LS K G +KLL +V+ R + A + N++ D +N
Sbjct: 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN--- 356
Query: 61 LVFK 64
VFK
Sbjct: 357 -VFK 359
>pdb|1H4I|A Chain A, Methylobacterium Extorquens Methanol Dehydrogenase
pdb|1H4I|C Chain C, Methylobacterium Extorquens Methanol Dehydrogenase
Length = 599
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 1 DDYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQNRMPDAINGGH 60
D+++ A N++ LS K G +KLL +V+ R + A + N++ D +N
Sbjct: 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVN--- 356
Query: 61 LVFK 64
VFK
Sbjct: 357 -VFK 359
>pdb|3OWU|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OWU|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OWU|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OWU|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida With Bound
Equilenin
pdb|3OX9|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
pdb|3OX9|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
pdb|3OX9|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
pdb|3OX9|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SF86C-Cn From P. Putida
Length = 131
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3OWY|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|E Chain E, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|F Chain F, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|G Chain G, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
pdb|3OWY|H Chain H, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM105C- Cn From P. Putida With Bound
Equilenin
Length = 131
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3OWS|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OWS|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OWS|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OWS|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida With Bound
Equilenin
pdb|3OXA|A Chain A, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
pdb|3OXA|B Chain B, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
pdb|3OXA|C Chain C, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
pdb|3OXA|D Chain D, Crystal Structure Of Ketosteroid Isomerase
D40nC69SC81SC97SM116C- Cn From P. Putida
Length = 131
Score = 30.4 bits (67), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1E3R|A Chain A, Crystal Structure Of Ketosteroid Isomerase Mutant D40n
(D38n Ti Numbering) From Pseudomonas Putida Complexed
With Androsten-3beta-Ol-17-One
pdb|1E3R|B Chain B, Crystal Structure Of Ketosteroid Isomerase Mutant D40n
(D38n Ti Numbering) From Pseudomonas Putida Complexed
With Androsten-3beta-Ol-17-One
pdb|1OGX|A Chain A, High Resolution Crystal Structure Of Ketosteroid Isomerase
Mutant D40n(D38n, Ti Numbering) From Pseudomonas Putida
Complexed With Equilenin At 2.0 A Resolution.
pdb|1OGX|B Chain B, High Resolution Crystal Structure Of Ketosteroid Isomerase
Mutant D40n(D38n, Ti Numbering) From Pseudomonas Putida
Complexed With Equilenin At 2.0 A Resolution.
pdb|2PZV|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2PZV|B Chain B, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2PZV|C Chain C, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2PZV|D Chain D, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound Phenol
pdb|2INX|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound 2,6-Difluorophenol
pdb|3CPO|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n With Bound
2-Fluorophenol
pdb|3VGN|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound
3-Fluoro-4-Nitrophenol
pdb|3VGN|B Chain B, Crystal Structure Of Ketosteroid Isomerase D40n From
Pseudomonas Putida (Pksi) With Bound
3-Fluoro-4-Nitrophenol
Length = 131
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1CQS|A Chain A, Crystal Structure Of D103e Mutant With Equilenineof Ksi In
Pseudomonas Putida
pdb|1CQS|B Chain B, Crystal Structure Of D103e Mutant With Equilenineof Ksi In
Pseudomonas Putida
Length = 131
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3FZW|A Chain A, Crystal Structure Of Ketosteroid Isomerase D40n-D103n From
Pseudomonas Putida (Pksi) With Bound Equilenin
pdb|3FZW|B Chain B, Crystal Structure Of Ketosteroid Isomerase D40n-D103n From
Pseudomonas Putida (Pksi) With Bound Equilenin
Length = 131
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX
pdb|1UAA|B Chain B, E. Coli Rep HelicaseDNA COMPLEX
Length = 673
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 47 IPQNRMPDAINGGHLVFKRPFVEDFMKFC 75
+ QNR+P I+GG F RP ++D + +
Sbjct: 362 LMQNRIPYKISGGTSFFSRPEIKDLLAYL 390
>pdb|1GS3|A Chain A, High Resolution Crystal Structure Of Pi Delta-5-3-
Ketosteroid Isomerase Mutants Y30fY55FY115F D38N
(Y32fY57FY119FD40N, PI NUMBERING)COMPLEXED WITH
Equilenin At 2.1 A Resolution
Length = 131
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ EN FGQPP++ F+ + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMFADDATVENPFGQPPIHGREQIAAFFRQGLG 62
>pdb|1LRW|A Chain A, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
pdb|1LRW|C Chain C, Crystal Structure Of Methanol Dehydrogenase From P.
Denitrificans
Length = 600
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 1 DDYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQNRMPDAIN 57
D+++ A N++ LS + G +KLL +V+ R N I ++M D +N
Sbjct: 300 DEWDYAGVNVMMLSEQEDKQGQMRKLLTHPDRNGIVYTLDRTNGDLISADKMDDTVN 356
>pdb|1W6Y|A Chain A, Crystal Structure Of A Mutant W92a In Ketosteroid
Isomerase (Ksi) From Pseudomonas Putida Biotype B
Length = 131
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1OHO|A Chain A, Crystal Structure Of Ketosteroid Isomerase Y16fD40N MUTANT
Complexed With Equilenin
Length = 131
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+++E L + D+++ V+ EN FGQPP++ FY + +
Sbjct: 10 QGLMARFIE-LVDVGDIEAIVQMYADDATVENPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1VZZ|A Chain A, Crystal Structure Of Mutant Enzyme Y32fD103L OF
Ketosteroid Isomerase From Pseudomonas Putida Biotype B
pdb|1VZZ|B Chain B, Crystal Structure Of Mutant Enzyme Y32fD103L OF
Ketosteroid Isomerase From Pseudomonas Putida Biotype B
Length = 131
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMFADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1W00|A Chain A, Crystal Structure Of Mutant Enzyme D103l Of Ketosteroid
Isomerase From Pseudomonas Putida Biotype B
pdb|1W00|B Chain B, Crystal Structure Of Mutant Enzyme D103l Of Ketosteroid
Isomerase From Pseudomonas Putida Biotype B
Length = 131
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|1DMQ|A Chain A, Crystal Structure Of Mutant Enzyme Y32f Of Ketosteroid
Isomerase From Pseudomonas Putida Biotype B
Length = 131
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMFADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|2D0V|A Chain A, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|D Chain D, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
pdb|2D0V|I Chain I, Crystal Structure Of Methanol Dehydrogenase From
Hyphomicrobium Denitrificans
Length = 597
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 1 DDYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQNRMPDAINGGH 60
D+++ A N++ LS G K+KLL +V+ R N I +++ D +N
Sbjct: 300 DEWDFAGVNVIMLSEQTDKTGKKRKLLTHPDRNGIVYTLDRENGDLISADKLDDTVN--- 356
Query: 61 LVFK 64
VFK
Sbjct: 357 -VFK 359
>pdb|1E3V|A Chain A, Crystal Structure Of Ketosteroid Isomerase From Psedomonas
Putida Complexed With Deoxycholate
pdb|1E3V|B Chain B, Crystal Structure Of Ketosteroid Isomerase From Psedomonas
Putida Complexed With Deoxycholate
pdb|1OH0|A Chain A, Crystal Structure Of Ketosteroid Isomerase Complexed With
Equilenin
pdb|1OH0|B Chain B, Crystal Structure Of Ketosteroid Isomerase Complexed With
Equilenin
pdb|1OPY|A Chain A, Ksi
Length = 131
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3VSY|A Chain A, High-resolution Crystal Structure Of Wild-type Ksi In The
Apo Form At Neutral Ph
pdb|3VSY|B Chain B, High-resolution Crystal Structure Of Wild-type Ksi In The
Apo Form At Neutral Ph
Length = 132
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 11 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 63
>pdb|3RGR|A Chain A, Crystal Structure Of Ketosteroid Isomerase M116a From
Pseudomonas Putida
Length = 131
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3SED|A Chain A, Crystal Structure Of Ketosteroid Isomerase Variant M105a
From Pseudomonos Putida
Length = 125
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 8 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 60
>pdb|1C7H|A Chain A, Crystal Structure Of A Mutant R75a In Ketosteroid
Isomerase From Psedomonas Putida Biotype B
Length = 131
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 193 NGELAKYLEGLAEAEDVQSYVK--------ENAFGQPPVNSSHPDWRFYCKSVS 238
G +A+Y+E L + D+++ V+ E+ FGQPP++ FY + +
Sbjct: 10 QGLMARYIE-LVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFYRQGLG 62
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 5 EAKDNI----LELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATI 47
E +D I E +ID++ GP +K L++SP+ + H A A +
Sbjct: 239 EGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVV 285
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 5 EAKDNI----LELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATI 47
E +D I E +ID++ GP +K L++SP+ + H A A +
Sbjct: 239 EGRDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVV 285
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 28/116 (24%)
Query: 2 DYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQ--------NRMP 53
D EEA D ++ L P KK LVLSP + H A A +++
Sbjct: 272 DLEEAADRVMML--------PAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVT 323
Query: 54 DAINGGHLVFKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKDKLLF 109
G L F P ED + WS ++R +D + G+ ++++F
Sbjct: 324 IVPRGRALGFMMPRREDMLH----------WS--RKRLLDQIAVALAGRAAEEIVF 367
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 28/116 (24%)
Query: 2 DYEEAKDNILELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQ--------NRMP 53
D EEA D ++ L P KK LVLSP + H A A +++
Sbjct: 263 DLEEAADRVMML--------PAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVT 314
Query: 54 DAINGGHLVFKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKDKLLF 109
G L F P ED + WS ++R +D + G+ ++++F
Sbjct: 315 IVPRGRALGFMMPRREDMLH----------WS--RKRLLDQIAVALAGRAAEEIVF 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,927,223
Number of Sequences: 62578
Number of extensions: 338303
Number of successful extensions: 809
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 31
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)