BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041910
(239 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94336|YHM3_SCHPO Uncharacterized FCP1 homology domain-containing protein C1271.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1271.03c PE=4 SV=1
Length = 244
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 36/205 (17%)
Query: 24 KKLLVLSPSRLLVHRAH--RANKATIPQNRMPDAINGGHLVFKRPFVEDFMKFCFERFEV 81
+KL++L + L+ RA R+ K+ +R P RP + +F+K+ F F V
Sbjct: 23 RKLVILDLNGTLLCRALAVRSEKSVYEASRNP---------IPRPGLHNFLKYIFANFSV 73
Query: 82 GIWSSAKERNVDTVLYCAMGKLKDK-LLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLW 140
++SS+K NV +L M + + K L+ W + D + K +K+L+ +W
Sbjct: 74 MVFSSSKPHNVQAMLSAIMNEEQKKALIACWTR---VDMKLTKHQFDRKVQTYKNLDTVW 130
Query: 141 QKIN---TSNKYHFNESDTLLIDDNPYKALLNPPNTSIFPEAYNPEDVNDKVLKPNG--- 194
+KI+ T +++ +T+++DD+ K +P YN V+D V K +
Sbjct: 131 EKIHHDSTGKPVSWSQYNTIIVDDSKTKCAAHP---------YNHIAVSDFVAKSHSNIP 181
Query: 195 ---ELA---KYLEGLAEAEDVQSYV 213
ELA +YL+ L +V Y+
Sbjct: 182 KDIELACVIRYLKHLKSVPNVSYYI 206
>sp|Q9XYL0|CTDS_DICDI Probable C-terminal domain small phosphatase OS=Dictyostelium
discoideum GN=fcpA PE=3 SV=1
Length = 306
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 28/153 (18%)
Query: 25 KLLVLSPSRLLVHRAHRANKATIPQNRMPDAINGG-HLVF--KRPFVEDFMKFCFERFEV 81
K LVL LVH + + P +P I G H V+ KRPFV+DF++ E+FE+
Sbjct: 137 KTLVLDLDETLVHSSFKP--VHNPDFIVPVEIEGTIHQVYVVKRPFVDDFLRAIAEKFEI 194
Query: 82 GIWSSAKERNVDTVL-YCAMGKLKDKLLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLW 140
+++++ + D VL + G++ LF +E C + K + KDL++L
Sbjct: 195 VVFTASLAKYADPVLDFLDTGRVIHYRLF---RESCHNH---------KGNYVKDLSRLG 242
Query: 141 QKINTSNKYHFNESDTLLIDDNPYKALLNPPNT 173
+ + + T+++D++P L +P N
Sbjct: 243 RDLKS----------TIIVDNSPSSYLFHPENA 265
>sp|Q09695|YA22_SCHPO Uncharacterized protein C2F7.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2F7.02c PE=1 SV=1
Length = 325
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 29/192 (15%)
Query: 24 KKLLVLSPSRLLVHRAHR-ANKATIPQNRMPDAINGGHLVFKRPFVEDFMKFCFERFEVG 82
KK L+L LVH + + A + D + V KRP V++F+K + FE+
Sbjct: 157 KKCLILDLDETLVHSSFKYIEPADFVVSIEIDGLQHDVRVVKRPGVDEFLKKMGDMFEIV 216
Query: 83 IWSSAKERNVDTVL-YCAMGKLKDKLLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLWQ 141
+++++ + D VL + LF +E C + F KDL++L +
Sbjct: 217 VFTASLAKYADPVLDMLDHSHVIRHRLF---REACCNYEGN---------FVKDLSQLGR 264
Query: 142 KINTSNKYHFNESDTLLIDDNPYKALLNPPNTSIFPEAYNPEDVNDKVLKPNGELAKYLE 201
N D+++ID++P + +P + +N D++D L +L +LE
Sbjct: 265 ----------NLEDSIIIDNSPSSYIFHPSHAVPISSWFN--DMHDMELI---DLIPFLE 309
Query: 202 GLAEAEDVQSYV 213
LA DV + +
Sbjct: 310 HLARVPDVSTVL 321
>sp|Q28EX9|UBCP1_XENTR Ubiquitin-like domain-containing CTD phosphatase 1 OS=Xenopus
tropicalis GN=ublcp1 PE=2 SV=1
Length = 318
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 75/158 (47%), Gaps = 33/158 (20%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKD---------KLLFVWDQEE 115
RP++ +F+ +E +++ IWS+ + ++ K+K+ K+ F+ D
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATSMKWIE-------AKMKELGVSTNSNYKITFMLDS-- 213
Query: 116 CTDSGFKSLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN-- 172
+ ++ + L K L +W K +N+++T++ DD L+NP N
Sbjct: 214 ---AAMITVHTPRRGLVDVKPLGVIWGKYGE----FYNKNNTIMFDDIGRNFLMNPQNGL 266
Query: 173 -TSIFPEAYNPEDVNDKVLKPNGELAKYLEGLAEAEDV 209
F +A+ D + ++LK L++YL+ +A+ +D+
Sbjct: 267 KIRPFMKAHLNRDKDKELLK----LSQYLKEIAQLDDL 300
>sp|Q6DI37|UBCP1_DANRE Ubiquitin-like domain-containing CTD phosphatase 1 OS=Danio rerio
GN=ublcp1 PE=2 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 59 GHLVFKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKD---KLLFVWDQEE 115
GH + RPF+ +F+ +E F++ IWS+ + +D + +G + K+ F+ D
Sbjct: 158 GHELM-RPFLHEFLTSAYEDFDIVIWSATSMKWIDAKM-KELGVTDNPNYKITFMLD--- 212
Query: 116 CTDSGFKSLEKKDKPLFFKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPNTSI 175
+ + K + K L +W K + +N +T++ DD L+NP N +
Sbjct: 213 -SAAMITVHTPKRGVVEVKPLGVIWGKYSE----FYNRKNTIMFDDIGRNFLMNPQN-GL 266
Query: 176 FPEAYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
+ +N + K +L++YL+ +A+ +D
Sbjct: 267 KIRPFMKAHLNREKDKELYKLSQYLKEIAKLDD 299
>sp|Q8DTR4|HIS3_STRMU Phosphoribosyl-AMP cyclohydrolase OS=Streptococcus mutans serotype
c (strain ATCC 700610 / UA159) GN=hisI PE=3 SV=1
Length = 109
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 122 KSLEKKDKPLFFKDLNKLWQKINTSNKYHFNES-------DTLLIDDNPYKALLNPPNTS 174
K+L+ K+ + + N+LW K +TS Y + +S DTLLI A + S
Sbjct: 40 KTLDSKEMYYWSRSRNELWHKGDTSGHYQYVKSIKTDCDQDTLLIAVEQVGAACHTGAYS 99
Query: 175 -IFPEAYNPE 183
F E YNPE
Sbjct: 100 CFFNEIYNPE 109
>sp|Q196V6|VF355_IIV3 Putative CTD phosphatase-like protein 355R OS=Invertebrate
iridescent virus 3 GN=IIV3-104L PE=3 SV=1
Length = 186
Score = 34.3 bits (77), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 62 VFKRPFVEDFMKFCFERFEVGIWSSA 87
+F+RP +++F+ + F+ F+VG+W+++
Sbjct: 50 IFERPHLQEFLDYLFKNFKVGVWTAS 75
>sp|Q5ZJJ8|UBCP1_CHICK Ubiquitin-like domain-containing CTD phosphatase 1 OS=Gallus gallus
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 34.3 bits (77), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K + ++++ +T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLIDVKPLGVIWGKFSE----YYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
A+ D + ++LK L +YL+ +A+ +D
Sbjct: 274 AHLNRDKDKELLK----LTQYLKEIAKLDD 299
>sp|Q8W3M6|UBCP_ARATH Ubiquitin-like domain-containing CTD phosphatase OS=Arabidopsis
thaliana GN=At4g06599 PE=2 SV=1
Length = 340
Score = 34.3 bits (77), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 61 LVFKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKD---KLLFVWDQEECT 117
L RP++ +F+ + +++ IWS+ + V+ + +G L + K+ + D
Sbjct: 177 LQLMRPYLHEFLTAAYAEYDIMIWSATSMKWVELKM-TELGVLNNPNYKVTALLDH---- 231
Query: 118 DSGFKSLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPNTSI- 175
+++ + +F K L +W + +N +T++ DD ++NP N
Sbjct: 232 -LAMITVQSDTRGIFDCKPLGLIWALLPE----FYNPGNTIMFDDLRRNFVMNPQNGLTI 286
Query: 176 --FPEAYNPEDVNDKVLKPNGELAKYLEGLAEAEDVQS 211
F +A+ D + +++K L +YL +AE D+ S
Sbjct: 287 KPFRKAHANRDTDQELVK----LTQYLLTIAELSDLSS 320
>sp|B8EBN0|SELU_SHEB2 tRNA 2-selenouridine synthase OS=Shewanella baltica (strain OS223)
GN=selU PE=3 SV=1
Length = 368
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 49 QNRMPDAINGGHLVFKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKDKLL 108
Q+ AI GH + P + +R E W+S + N + LYC G L+ +L
Sbjct: 58 QSGQQAAIALGHSLVNGPIKQ-------QRIEA--WASYVKANPNAYLYCFRGGLRSQLT 108
Query: 109 FVWDQEECTD-----SGFKSLEK 126
W +E C + G+K+L +
Sbjct: 109 QQWLKEACVEVPYIQGGYKALRQ 131
>sp|Q641F1|UBCP1_XENLA Ubiquitin-like domain-containing CTD phosphatase 1 OS=Xenopus
laevis GN=ublcp1 PE=2 SV=1
Length = 318
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLSSAYEDYDIVIWSATSMKWIEAKMKELGVTTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K +++++T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLVDVKPLGVIWGKYGE----FYSKNNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAEDV 209
A+ D + +++K L++YL+ +A+ +D+
Sbjct: 274 AHLNRDKDKELVK----LSQYLKEIAQLDDL 300
>sp|Q7VYD0|RS2_BORPE 30S ribosomal protein S2 OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=rpsB PE=3 SV=1
Length = 249
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 84 WSSAKERNVDTVLYCAMGKLKDKLLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLWQKI 143
W N TV ++ +LKD V D GF+ + KK+ LF ++L+KL + I
Sbjct: 94 WLGGMLTNFKTV-KSSIKRLKDMEAMV------ADGGFERMTKKEGLLFQRELDKLNKSI 146
Query: 144 NTSNKYHFNESDTLLIDDNPYKAL-------LNPPNTSIFPEAYNPEDVNDKVLKPNGE- 195
+ D L + D Y + L P ++ ++P+ + D V+ N +
Sbjct: 147 GGIKDMN-GLPDALFVIDVGYHKIAVAEAKVLGIPVVAVVDTNHSPDGI-DHVIPGNDDS 204
Query: 196 ---LAKYLEGLAEA------EDVQSYVKENAFGQ 220
+A Y +G+A+A +++ V+E GQ
Sbjct: 205 ARAIALYAKGMADAVLEGREQNINGLVEEIGEGQ 238
>sp|Q7WA60|RS2_BORPA 30S ribosomal protein S2 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rpsB PE=3 SV=1
Length = 249
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 84 WSSAKERNVDTVLYCAMGKLKDKLLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLWQKI 143
W N TV ++ +LKD V D GF+ + KK+ LF ++L+KL + I
Sbjct: 94 WLGGMLTNFKTV-KSSIKRLKDMEAMV------ADGGFERMTKKEGLLFQRELDKLNKSI 146
Query: 144 NTSNKYHFNESDTLLIDDNPYKAL-------LNPPNTSIFPEAYNPEDVNDKVLKPNGE- 195
+ D L + D Y + L P ++ ++P+ + D V+ N +
Sbjct: 147 GGIKDMN-GLPDALFVIDVGYHKIAVAEAKVLGIPVVAVVDTNHSPDGI-DHVIPGNDDS 204
Query: 196 ---LAKYLEGLAEA------EDVQSYVKENAFGQ 220
+A Y +G+A+A +++ V+E GQ
Sbjct: 205 ARAIALYAKGMADAVLEGREQNINGLVEEIGEGQ 238
>sp|Q7WJ94|RS2_BORBR 30S ribosomal protein S2 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rpsB PE=3 SV=1
Length = 249
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 26/154 (16%)
Query: 84 WSSAKERNVDTVLYCAMGKLKDKLLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLWQKI 143
W N TV ++ +LKD V D GF+ + KK+ LF ++L+KL + I
Sbjct: 94 WLGGMLTNFKTV-KSSIKRLKDMEAMV------ADGGFERMTKKEGLLFQRELDKLNKSI 146
Query: 144 NTSNKYHFNESDTLLIDDNPYKAL-------LNPPNTSIFPEAYNPEDVNDKVLKPNGE- 195
+ D L + D Y + L P ++ ++P+ + D V+ N +
Sbjct: 147 GGIKDMN-GLPDALFVIDVGYHKIAVAEAKVLGIPVVAVVDTNHSPDGI-DHVIPGNDDS 204
Query: 196 ---LAKYLEGLAEA------EDVQSYVKENAFGQ 220
+A Y +G+A+A +++ V+E GQ
Sbjct: 205 ARAIALYAKGMADAVLEGREQNINGLVEEIGEGQ 238
>sp|Q8WVY7|UBCP1_HUMAN Ubiquitin-like domain-containing CTD phosphatase 1 OS=Homo sapiens
GN=UBLCP1 PE=1 SV=2
Length = 318
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K + +++ +T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLIDVKPLGVIWGKFSE----FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
A+ D + ++LK L +YL+ +A+ +D
Sbjct: 274 AHLNRDKDKELLK----LTQYLKEIAKLDD 299
>sp|Q2KJD7|UBCP1_BOVIN Ubiquitin-like domain-containing CTD phosphatase 1 OS=Bos taurus
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K + +++ +T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLIDVKPLGVIWGKFSE----FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
A+ D + ++LK L +YL+ +A+ +D
Sbjct: 274 AHLNRDKDKELLK----LTQYLKEIAKLDD 299
>sp|Q5R4C4|UBCP1_PONAB Ubiquitin-like domain-containing CTD phosphatase 1 OS=Pongo abelii
GN=UBLCP1 PE=2 SV=1
Length = 318
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K + +++ +T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLIDVKPLGVIWGKFSE----FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
A+ D + +LK L +YL+ +A+ +D
Sbjct: 274 AHLNRDKDKGLLK----LTQYLKEIAKLDD 299
>sp|Q1R084|SELU_CHRSD tRNA 2-selenouridine synthase OS=Chromohalobacter salexigens
(strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=selU
PE=3 SV=1
Length = 361
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 81 VGIWSSAKERNVDTVLYCAMGKLKDKLLFVWDQEEC-----TDSGFKSLEK 126
V W + ER+ D V+YC G L+ ++ W QE G+K++ +
Sbjct: 77 VAAWRAFAERHPDAVIYCFRGGLRSRIAQQWLQEAGITLPRIQGGWKAMRQ 127
>sp|Q54GB2|CTSL2_DICDI CTD small phosphatase-like protein 2 OS=Dictyostelium discoideum
GN=ctdspl2 PE=3 SV=1
Length = 567
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 28/161 (17%)
Query: 57 NGGHLVF--KRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKDKLLFVWDQE 114
N + VF KRPF E+F+ + FEV I+++++E + +L M +K+ + ++
Sbjct: 422 NTEYQVFAKKRPFFEEFLHKVSDIFEVIIFTASQEVYANKLL--NMIDPNNKIKYRLYRD 479
Query: 115 ECTDSGFKSLEKKDKPLFFKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPNTS 174
C L KD + +DL ++ N+ + F + + P S
Sbjct: 480 SCVYVDGNYL--KDLSVLGRDLKQVVIIDNSPQSFGFQVDNGI-------------PIES 524
Query: 175 IFPEAYNPEDVNDKVLKPNGELAKYLEGLAEAEDVQSYVKE 215
F ED NDK L +L +LE L EDV+ ++++
Sbjct: 525 WF------EDENDKELL---QLVPFLESLTNVEDVRPHIRD 556
>sp|A9BMN2|RS2_DELAS 30S ribosomal protein S2 OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=rpsB PE=3 SV=1
Length = 250
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 118 DSGFKSLEKKDKPLFFKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKAL------LNPP 171
++G +++ KK++ +F ++L KL + I + +ID +K L P
Sbjct: 121 EAGLEAMSKKEQLMFVRELEKLEKDIGGIQDMNSLPDAIFVIDVGFHKIAVAEAKKLGIP 180
Query: 172 NTSIFPEAYNPEDVNDKVLKPNGELAK----YLEGLAEA 206
+ +NPE + D V+ N + AK Y +G+A+A
Sbjct: 181 LVGVVDSNHNPEGI-DYVIPGNDDSAKAVQLYAQGIADA 218
>sp|Q5SI82|FTSH_THET8 ATP-dependent zinc metalloprotease FtsH OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=ftsH PE=1 SV=1
Length = 624
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 11 LELSIDKLNLGPKKKLLVLSPSRLLVHRAHRANKATIPQ--------NRMPDAINGGHLV 62
LE + D++ +GP KK LVLSP + H A A +++ G L
Sbjct: 389 LEEAADRVMMGPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRALG 448
Query: 63 FKRPFVEDFMKFCFERFEVGIWSSAKERNVDTVLYCAMGKLKDKLLF 109
F P ED + WS ++R +D + G+ ++++F
Sbjct: 449 FMMPRREDMLH----------WS--RKRLLDQIAVALAGRAAEEIVF 483
>sp|Q8BGR9|UBCP1_MOUSE Ubiquitin-like domain-containing CTD phosphatase 1 OS=Mus musculus
GN=Ublcp1 PE=1 SV=1
Length = 318
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K + +++ +T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLIDVKPLGVIWGKFSE----FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
A+ D + +++K L +YL+ +A+ +D
Sbjct: 274 AHLNRDKDKELVK----LTQYLKEIAKLDD 299
>sp|Q5FWT7|UBCP1_RAT Ubiquitin-like domain-containing CTD phosphatase 1 OS=Rattus
norvegicus GN=Ublcp1 PE=2 SV=1
Length = 318
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/150 (20%), Positives = 70/150 (46%), Gaps = 19/150 (12%)
Query: 65 RPFVEDFMKFCFERFEVGIWSSAKERNVDTVL--YCAMGKLKDKLLFVWDQEECTDSGFK 122
RP++ +F+ +E +++ IWS+ + ++ + K+ F+ D +
Sbjct: 163 RPYLHEFLTSAYEDYDIVIWSATNMKWIEAKMKELGVSTNANYKITFMLDS-----AAMI 217
Query: 123 SLEKKDKPLF-FKDLNKLWQKINTSNKYHFNESDTLLIDDNPYKALLNPPN---TSIFPE 178
++ + L K L +W K + +++ +T++ DD L+NP N F +
Sbjct: 218 TVHTPRRGLIDVKPLGVIWGKFSE----FYSKKNTIMFDDIGRNFLMNPQNGLKIRPFMK 273
Query: 179 AYNPEDVNDKVLKPNGELAKYLEGLAEAED 208
A+ D + +++K L +YL+ +A+ +D
Sbjct: 274 AHLNRDKDKELVK----LTQYLKEIAKLDD 299
>sp|Q54UW0|Y0785_DICDI UPF0746 protein DDB_G0280785 OS=Dictyostelium discoideum
GN=DDB_G0280785 PE=3 SV=1
Length = 972
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 97 YCAMGKLKDKLLFVWDQEECTDSGFKSLEKKDKPLFFKDLNKLWQKI 143
Y ++GKL + D++E D F++ +D+ LFFKD N++W++I
Sbjct: 572 YPSIGKLIGDYCHLIDKKEILDFYFQNY--RDECLFFKDQNEIWKQI 616
>sp|Q07800|PSR1_YEAST Phosphatase PSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PSR1 PE=1 SV=1
Length = 427
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 24 KKLLVLSPSRLLVHRAHRANKAT--IPQNRMPDAINGGHLVFKRPFVEDFMKFCFERFEV 81
KK L+L LVH + + ++ + + D ++ + V KRP VE+F++ + FEV
Sbjct: 257 KKCLILDLDETLVHSSFKYLRSADFVLSVEIDDQVHNVY-VIKRPGVEEFLERVGKLFEV 315
Query: 82 GIWSSAKERNVDTVL 96
+++++ R D +L
Sbjct: 316 VVFTASVSRYGDPLL 330
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,322,201
Number of Sequences: 539616
Number of extensions: 4243828
Number of successful extensions: 10242
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10223
Number of HSP's gapped (non-prelim): 39
length of query: 239
length of database: 191,569,459
effective HSP length: 114
effective length of query: 125
effective length of database: 130,053,235
effective search space: 16256654375
effective search space used: 16256654375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)