BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041911
         (624 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RPU|A Chain A, Crystal Structure Of The Muke-Mukf Complex
 pdb|3RPU|B Chain B, Crystal Structure Of The Muke-Mukf Complex
 pdb|3RPU|X Chain X, Crystal Structure Of The Muke-Mukf Complex
          Length = 460

 Score = 30.0 bits (66), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 297 DVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAE 356
           D  +++RE + +R     LS  L+    +LK    + E+   EF W +   + ++ ++AE
Sbjct: 132 DYYIRQREFSTLR-----LSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAE 186

Query: 357 CSKEVELKKNQLN 369
               ++L +  ++
Sbjct: 187 IFDSIDLTQRLMD 199


>pdb|3EUH|A Chain A, Crystal Structure Of The Muke-Mukf Complex
 pdb|3EUH|B Chain B, Crystal Structure Of The Muke-Mukf Complex
          Length = 440

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 297 DVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAE 356
           D  +++RE + +R     LS  L+    +LK    + E+   EF W +   + ++ ++AE
Sbjct: 112 DYYIRQREFSTLR-----LSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPLKYSVAE 166

Query: 357 CSKEVELKKNQLN 369
               ++L +  ++
Sbjct: 167 IFDSIDLTQRLMD 179


>pdb|3QO5|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
          Length = 485

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 13/100 (13%)

Query: 287 MRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSI-------EDCSKE 339
           ++  QKK  D VEL    + E +++++ L  DL   +K+L  VQ+ I       ED +K+
Sbjct: 18  IKASQKKRGDSVELVDEIIAEYKEWVK-LRFDLDEHNKKLNSVQKEIGKRFKAKED-AKD 75

Query: 340 FQWKKKELSSIEKTI----AECSKEVELKKNQLNLVQHES 375
              +K++LS+ +K I    AE  K +  K NQ+  + HES
Sbjct: 76  LIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHES 115


>pdb|3QNE|A Chain A, Candida Albicans Seryl-Trna Synthetase
 pdb|3QO7|A Chain A, Crystal Structure Of The Seryl-Trna Synthetase From
           Candida Albicans
 pdb|3QO8|A Chain A, Crystal Structure Of Seryl-Trna Synthetase From Candida
           Albicans
          Length = 485

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 13/100 (13%)

Query: 287 MRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSI-------EDCSKE 339
           ++  QKK  D VEL    + E +++++ L  DL   +K+L  VQ+ I       ED +K+
Sbjct: 18  IKASQKKRGDSVELVDEIIAEYKEWVK-LRFDLDEHNKKLNSVQKEIGKRFKAKED-AKD 75

Query: 340 FQWKKKELSSIEKTI----AECSKEVELKKNQLNLVQHES 375
              +K++LS+ +K I    AE  K +  K NQ+  + HES
Sbjct: 76  LIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHES 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,023,103
Number of Sequences: 62578
Number of extensions: 540539
Number of successful extensions: 1907
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 179
length of query: 624
length of database: 14,973,337
effective HSP length: 105
effective length of query: 519
effective length of database: 8,402,647
effective search space: 4360973793
effective search space used: 4360973793
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)