Query 041911
Match_columns 624
No_of_seqs 324 out of 907
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 11:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041911.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041911hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 9E-61 1.9E-65 493.3 17.9 196 426-622 10-219 (290)
2 KOG0933 Structural maintenance 99.9 8.5E-19 1.8E-23 197.5 39.7 304 14-328 153-486 (1174)
3 COG1196 Smc Chromosome segrega 99.7 4.7E-14 1E-18 172.5 48.3 117 13-133 148-275 (1163)
4 TIGR02169 SMC_prok_A chromosom 99.6 5.1E-11 1.1E-15 146.3 51.1 118 13-134 146-267 (1164)
5 TIGR02168 SMC_prok_B chromosom 99.4 4.9E-09 1.1E-13 128.7 48.7 253 16-276 151-415 (1179)
6 PRK02224 chromosome segregatio 99.4 6.7E-07 1.5E-11 107.4 59.5 52 15-74 144-195 (880)
7 TIGR02169 SMC_prok_A chromosom 99.2 4.8E-07 1.1E-11 111.4 48.6 97 47-145 169-271 (1164)
8 KOG0161 Myosin class II heavy 99.2 2E-05 4.4E-10 98.5 57.3 150 159-308 995-1144(1930)
9 PRK03918 chromosome segregatio 99.1 6.3E-05 1.4E-09 90.5 59.2 53 18-74 143-201 (880)
10 PRK01156 chromosome segregatio 99.1 5.7E-05 1.2E-09 91.2 58.7 42 14-59 143-184 (895)
11 KOG0964 Structural maintenance 99.1 1.2E-06 2.5E-11 100.5 40.9 193 28-220 157-371 (1200)
12 PRK04863 mukB cell division pr 99.1 2E-06 4.3E-11 106.6 45.5 104 28-134 283-392 (1486)
13 KOG0161 Myosin class II heavy 99.0 0.00019 4.2E-09 90.0 58.9 102 42-143 1014-1136(1930)
14 TIGR00606 rad50 rad50. This fa 98.9 0.00042 9.1E-09 86.9 53.4 25 35-59 633-657 (1311)
15 PF00261 Tropomyosin: Tropomyo 98.9 4.5E-06 9.8E-11 85.0 29.8 36 285-320 200-235 (237)
16 TIGR00606 rad50 rad50. This fa 98.8 0.0015 3.2E-08 82.1 60.6 31 360-390 1051-1081(1311)
17 PRK01156 chromosome segregatio 98.8 0.0013 2.9E-08 79.4 60.6 18 201-218 419-436 (895)
18 COG1196 Smc Chromosome segrega 98.8 0.00043 9.3E-09 85.8 49.0 63 247-309 842-904 (1163)
19 PF00261 Tropomyosin: Tropomyo 98.8 1.2E-05 2.6E-10 81.9 29.6 57 243-299 172-228 (237)
20 KOG0933 Structural maintenance 98.7 0.00044 9.4E-09 80.4 42.6 245 60-312 692-936 (1174)
21 KOG0996 Structural maintenance 98.7 0.00033 7.2E-09 82.5 41.2 130 405-555 1096-1226(1293)
22 KOG0996 Structural maintenance 98.6 0.0025 5.5E-08 75.4 45.1 51 28-78 254-307 (1293)
23 KOG0250 DNA repair protein RAD 98.4 0.0016 3.5E-08 76.8 35.9 224 85-308 209-441 (1074)
24 PF10174 Cast: RIM-binding pro 98.4 0.014 3E-07 68.6 44.4 36 257-292 468-503 (775)
25 KOG0250 DNA repair protein RAD 98.3 0.018 3.9E-07 68.4 52.0 16 444-459 840-855 (1074)
26 PHA02562 46 endonuclease subun 98.3 0.00037 8E-09 79.6 28.2 39 17-59 147-185 (562)
27 KOG0018 Structural maintenance 98.3 0.0097 2.1E-07 70.2 38.3 34 26-59 145-178 (1141)
28 KOG4674 Uncharacterized conser 98.2 0.041 8.9E-07 68.9 52.0 221 51-291 44-268 (1822)
29 PF10174 Cast: RIM-binding pro 98.2 0.03 6.5E-07 65.9 50.3 66 248-313 288-353 (775)
30 KOG0994 Extracellular matrix g 98.1 0.058 1.3E-06 64.0 41.3 62 189-250 1568-1629(1758)
31 KOG1029 Endocytic adaptor prot 98.1 0.041 8.9E-07 62.8 36.4 12 514-525 779-790 (1118)
32 PF07888 CALCOCO1: Calcium bin 98.0 0.054 1.2E-06 60.9 42.4 11 415-425 441-451 (546)
33 PHA02562 46 endonuclease subun 97.9 0.013 2.7E-07 67.1 30.8 8 458-465 496-503 (562)
34 PF07888 CALCOCO1: Calcium bin 97.9 0.073 1.6E-06 59.8 45.3 25 253-277 324-348 (546)
35 PRK04778 septation ring format 97.9 0.088 1.9E-06 60.6 45.0 203 175-377 280-501 (569)
36 PF12128 DUF3584: Protein of u 97.8 0.2 4.3E-06 62.8 67.9 49 8-56 325-374 (1201)
37 KOG0994 Extracellular matrix g 97.8 0.15 3.3E-06 60.6 40.4 150 156-312 1511-1663(1758)
38 PF05701 WEMBL: Weak chloropla 97.8 0.12 2.5E-06 59.0 49.4 38 36-73 43-83 (522)
39 PF12128 DUF3584: Protein of u 97.8 0.25 5.4E-06 61.9 57.4 25 202-226 508-532 (1201)
40 COG1579 Zn-ribbon protein, pos 97.7 0.0098 2.1E-07 60.3 22.7 62 239-300 88-149 (239)
41 PF05483 SCP-1: Synaptonemal c 97.7 0.16 3.5E-06 57.7 54.3 97 36-132 171-282 (786)
42 PRK04778 septation ring format 97.7 0.19 4E-06 58.0 50.3 46 87-132 102-147 (569)
43 KOG0971 Microtubule-associated 97.7 0.21 4.6E-06 58.2 38.9 126 185-313 305-441 (1243)
44 KOG0995 Centromere-associated 97.7 0.16 3.5E-06 56.8 44.9 59 82-140 265-323 (581)
45 PF05701 WEMBL: Weak chloropla 97.7 0.19 4.1E-06 57.2 47.9 140 172-311 283-422 (522)
46 KOG0964 Structural maintenance 97.7 0.24 5.2E-06 58.3 38.2 93 95-187 256-359 (1200)
47 COG1579 Zn-ribbon protein, pos 97.6 0.025 5.5E-07 57.3 23.7 146 181-326 21-168 (239)
48 PRK11637 AmiB activator; Provi 97.6 0.099 2.1E-06 58.0 30.7 11 587-597 388-398 (428)
49 PRK11637 AmiB activator; Provi 97.6 0.11 2.3E-06 57.7 30.8 47 88-134 80-126 (428)
50 KOG4643 Uncharacterized coiled 97.6 0.33 7.2E-06 57.4 48.1 39 339-377 503-541 (1195)
51 PRK04863 mukB cell division pr 97.6 0.53 1.2E-05 59.6 51.5 192 85-280 288-482 (1486)
52 COG1340 Uncharacterized archae 97.6 0.15 3.2E-06 53.1 36.0 82 221-302 167-248 (294)
53 PF12718 Tropomyosin_1: Tropom 97.6 0.015 3.3E-07 54.7 19.7 132 164-299 8-139 (143)
54 PF09726 Macoilin: Transmembra 97.5 0.088 1.9E-06 61.6 29.2 88 91-181 426-513 (697)
55 KOG0971 Microtubule-associated 97.4 0.43 9.4E-06 55.8 42.3 36 292-327 447-482 (1243)
56 KOG1029 Endocytic adaptor prot 97.4 0.45 9.8E-06 54.8 37.0 9 37-45 312-320 (1118)
57 PF00038 Filament: Intermediat 97.4 0.28 6.1E-06 51.9 36.5 40 241-280 210-249 (312)
58 KOG0612 Rho-associated, coiled 97.3 0.71 1.5E-05 55.9 44.7 7 492-498 1023-1029(1317)
59 KOG1003 Actin filament-coating 97.3 0.21 4.6E-06 48.7 26.5 135 160-301 64-198 (205)
60 KOG0018 Structural maintenance 97.2 0.79 1.7E-05 54.8 36.0 42 528-569 1055-1096(1141)
61 KOG0946 ER-Golgi vesicle-tethe 97.2 0.57 1.2E-05 54.4 30.5 32 200-231 801-832 (970)
62 COG0419 SbcC ATPase involved i 97.2 0.93 2E-05 55.2 59.7 34 550-586 854-887 (908)
63 PF12718 Tropomyosin_1: Tropom 97.2 0.063 1.4E-06 50.5 19.4 91 207-297 16-109 (143)
64 PF05483 SCP-1: Synaptonemal c 97.2 0.65 1.4E-05 53.0 55.0 14 46-59 220-233 (786)
65 KOG0977 Nuclear envelope prote 97.2 0.64 1.4E-05 52.5 30.2 22 38-59 89-110 (546)
66 PF01576 Myosin_tail_1: Myosin 97.1 0.0001 2.2E-09 88.1 0.0 149 165-313 133-281 (859)
67 COG1340 Uncharacterized archae 97.1 0.45 9.7E-06 49.6 34.5 83 203-285 163-245 (294)
68 PF15619 Lebercilin: Ciliary p 97.1 0.36 7.9E-06 47.7 24.3 39 244-282 154-192 (194)
69 KOG0980 Actin-binding protein 97.0 1.1 2.4E-05 52.5 33.5 73 488-562 790-905 (980)
70 PF01576 Myosin_tail_1: Myosin 97.0 0.00018 4E-09 85.9 0.0 19 60-78 132-150 (859)
71 KOG0963 Transcription factor/C 97.0 1 2.2E-05 51.0 41.1 188 35-229 74-273 (629)
72 KOG0946 ER-Golgi vesicle-tethe 97.0 1.2 2.6E-05 51.8 30.2 114 21-134 566-708 (970)
73 PF14915 CCDC144C: CCDC144C pr 96.9 0.65 1.4E-05 48.2 35.9 130 193-322 139-268 (305)
74 KOG0980 Actin-binding protein 96.8 1.6 3.5E-05 51.3 30.9 21 251-271 498-518 (980)
75 PF05667 DUF812: Protein of un 96.8 1.5 3.2E-05 50.6 34.4 47 185-231 434-480 (594)
76 KOG0995 Centromere-associated 96.8 1.3 2.8E-05 49.8 43.7 39 246-284 431-469 (581)
77 KOG1003 Actin filament-coating 96.6 0.75 1.6E-05 45.0 26.4 123 182-304 58-180 (205)
78 PF05667 DUF812: Protein of un 96.6 2 4.4E-05 49.6 33.3 48 265-312 488-535 (594)
79 PRK09039 hypothetical protein; 96.6 0.59 1.3E-05 50.4 23.5 12 295-306 189-200 (343)
80 KOG0612 Rho-associated, coiled 96.6 2.8 6.1E-05 51.0 43.6 7 52-58 465-471 (1317)
81 COG4372 Uncharacterized protei 96.6 1.4 2.9E-05 47.3 32.4 64 237-300 214-277 (499)
82 COG4372 Uncharacterized protei 96.5 1.5 3.3E-05 47.0 33.2 30 50-79 62-94 (499)
83 COG0419 SbcC ATPase involved i 96.5 3.5 7.6E-05 50.3 59.0 41 15-59 149-189 (908)
84 PF06160 EzrA: Septation ring 96.4 2.5 5.5E-05 48.6 43.1 34 343-376 387-420 (560)
85 COG5185 HEC1 Protein involved 96.4 2.1 4.5E-05 47.0 31.7 93 84-176 303-402 (622)
86 PF00038 Filament: Intermediat 96.3 1.9 4.1E-05 45.6 39.5 62 245-306 193-254 (312)
87 KOG4643 Uncharacterized coiled 96.3 3.8 8.2E-05 48.9 42.2 42 92-133 303-344 (1195)
88 KOG0962 DNA repair protein RAD 96.2 5.3 0.00011 49.4 46.6 18 578-595 1250-1267(1294)
89 COG3883 Uncharacterized protei 96.2 1.9 4.2E-05 44.4 23.3 69 160-228 35-103 (265)
90 TIGR00634 recN DNA repair prot 96.1 2.2 4.8E-05 49.1 26.1 61 17-81 141-204 (563)
91 PF15619 Lebercilin: Ciliary p 96.1 1.6 3.4E-05 43.2 24.1 41 234-274 69-109 (194)
92 KOG0999 Microtubule-associated 96.1 3.1 6.8E-05 46.5 32.6 71 239-313 176-253 (772)
93 PF10473 CENP-F_leu_zip: Leuci 96.0 1.3 2.8E-05 41.5 20.2 58 241-298 53-110 (140)
94 PF05911 DUF869: Plant protein 95.9 5.2 0.00011 47.5 28.9 63 239-301 651-713 (769)
95 PF05010 TACC: Transforming ac 95.8 2.4 5.3E-05 42.3 29.5 26 199-224 112-137 (207)
96 KOG0976 Rho/Rac1-interacting s 95.7 6 0.00013 46.2 44.5 23 102-124 118-140 (1265)
97 KOG0977 Nuclear envelope prote 95.5 6 0.00013 45.0 34.8 39 37-79 31-69 (546)
98 KOG0963 Transcription factor/C 95.4 6.4 0.00014 44.9 45.5 95 338-434 310-419 (629)
99 TIGR03185 DNA_S_dndD DNA sulfu 95.4 7.5 0.00016 45.6 40.9 13 459-471 575-587 (650)
100 COG4942 Membrane-bound metallo 95.4 5.5 0.00012 43.8 32.0 44 84-127 67-110 (420)
101 COG4942 Membrane-bound metallo 95.4 5.6 0.00012 43.7 31.5 37 518-554 319-361 (420)
102 KOG0978 E3 ubiquitin ligase in 95.1 8.8 0.00019 44.8 37.0 48 185-232 476-523 (698)
103 PF04849 HAP1_N: HAP1 N-termin 95.1 5.3 0.00012 42.1 27.4 26 110-135 96-121 (306)
104 KOG0979 Structural maintenance 95.1 11 0.00023 45.4 28.3 44 90-133 181-224 (1072)
105 PF09728 Taxilin: Myosin-like 95.1 5.7 0.00012 42.2 40.4 32 239-270 215-246 (309)
106 TIGR00634 recN DNA repair prot 95.0 9 0.0002 44.2 26.4 38 95-132 166-203 (563)
107 PF05557 MAD: Mitotic checkpoi 94.8 0.019 4.1E-07 67.9 3.3 31 576-606 687-718 (722)
108 TIGR02680 conserved hypothetic 94.8 17 0.00037 46.4 34.4 93 40-132 734-835 (1353)
109 PF05010 TACC: Transforming ac 94.5 5.7 0.00012 39.7 28.3 39 241-279 162-200 (207)
110 TIGR01843 type_I_hlyD type I s 94.5 8.9 0.00019 41.8 23.9 22 284-305 248-269 (423)
111 PF15070 GOLGA2L5: Putative go 94.5 12 0.00027 43.4 38.9 32 402-433 418-449 (617)
112 PRK10869 recombination and rep 94.4 12 0.00026 43.1 29.1 61 17-81 137-200 (553)
113 PF05622 HOOK: HOOK protein; 94.3 0.012 2.7E-07 69.4 0.0 49 35-83 261-315 (713)
114 TIGR02680 conserved hypothetic 94.3 22 0.00048 45.4 36.8 19 60-78 743-761 (1353)
115 PF08317 Spc7: Spc7 kinetochor 94.2 9.2 0.0002 40.9 30.0 25 274-298 236-260 (325)
116 PF14915 CCDC144C: CCDC144C pr 94.2 8.2 0.00018 40.3 37.4 69 154-222 142-210 (305)
117 PF05557 MAD: Mitotic checkpoi 94.1 0.35 7.5E-06 57.4 11.7 70 154-223 355-424 (722)
118 PF06160 EzrA: Septation ring 93.8 16 0.00034 42.2 49.6 30 395-424 390-419 (560)
119 TIGR03007 pepcterm_ChnLen poly 93.7 10 0.00022 42.8 22.2 17 506-522 465-481 (498)
120 KOG0976 Rho/Rac1-interacting s 93.7 18 0.00039 42.4 47.9 73 60-132 93-169 (1265)
121 PF13851 GAS: Growth-arrest sp 93.6 8.4 0.00018 38.4 24.8 53 178-230 87-139 (201)
122 PF08614 ATG16: Autophagy prot 93.5 0.93 2E-05 44.8 11.6 69 230-298 113-181 (194)
123 PF12325 TMF_TATA_bd: TATA ele 93.4 4.9 0.00011 36.7 15.1 49 160-208 65-113 (120)
124 COG3883 Uncharacterized protei 93.2 12 0.00026 38.8 25.0 77 153-229 35-111 (265)
125 PF12325 TMF_TATA_bd: TATA ele 93.1 5.7 0.00012 36.3 15.1 55 243-297 64-118 (120)
126 KOG0979 Structural maintenance 93.0 26 0.00057 42.3 33.1 71 243-313 286-356 (1072)
127 PF09728 Taxilin: Myosin-like 93.0 14 0.00031 39.2 37.1 68 245-312 207-274 (309)
128 PF07035 Mic1: Colon cancer-as 92.9 0.15 3.3E-06 49.2 4.9 82 535-620 45-132 (167)
129 PF04849 HAP1_N: HAP1 N-termin 92.9 14 0.00031 39.0 29.6 13 17-29 35-47 (306)
130 PF08614 ATG16: Autophagy prot 92.6 1.7 3.8E-05 42.8 12.2 71 220-290 117-187 (194)
131 PRK10869 recombination and rep 92.5 24 0.00053 40.6 26.2 36 97-132 164-199 (553)
132 PF10481 CENP-F_N: Cenp-F N-te 92.5 5.1 0.00011 41.2 15.1 25 501-525 271-295 (307)
133 PF10498 IFT57: Intra-flagella 92.3 7.8 0.00017 42.1 17.5 27 248-274 329-355 (359)
134 PRK11281 hypothetical protein; 92.3 38 0.00082 42.3 32.5 27 33-59 48-74 (1113)
135 TIGR03007 pepcterm_ChnLen poly 92.2 24 0.00051 39.9 23.3 61 252-312 315-378 (498)
136 TIGR01005 eps_transp_fam exopo 91.9 21 0.00046 42.6 22.4 53 261-313 345-400 (754)
137 PF15070 GOLGA2L5: Putative go 91.8 31 0.00066 40.3 40.1 15 60-74 51-65 (617)
138 PF08317 Spc7: Spc7 kinetochor 91.7 21 0.00046 38.2 30.1 26 108-133 146-171 (325)
139 TIGR01843 type_I_hlyD type I s 91.2 26 0.00055 38.2 24.3 29 285-313 242-270 (423)
140 KOG0978 E3 ubiquitin ligase in 91.0 38 0.00083 39.8 39.4 131 170-300 454-584 (698)
141 PF10481 CENP-F_N: Cenp-F N-te 90.8 11 0.00024 38.9 15.4 33 279-311 99-131 (307)
142 TIGR01005 eps_transp_fam exopo 90.6 41 0.0009 40.1 23.0 29 272-300 373-401 (754)
143 PRK12704 phosphodiesterase; Pr 90.5 19 0.0004 41.2 18.9 8 491-498 266-273 (520)
144 PF10168 Nup88: Nuclear pore c 90.1 33 0.00071 40.8 21.1 31 246-276 684-714 (717)
145 PF13851 GAS: Growth-arrest sp 90.1 22 0.00047 35.5 24.8 46 156-201 86-131 (201)
146 PRK00106 hypothetical protein; 89.6 14 0.00031 42.2 16.9 12 489-500 279-290 (535)
147 PF05911 DUF869: Plant protein 89.0 58 0.0013 39.0 31.6 167 162-328 588-758 (769)
148 PF10186 Atg14: UV radiation r 88.8 32 0.00069 35.7 19.4 9 448-456 196-204 (302)
149 TIGR03017 EpsF chain length de 88.7 43 0.00094 37.1 22.5 26 107-132 174-199 (444)
150 TIGR03319 YmdA_YtgF conserved 88.2 27 0.00059 39.9 18.1 9 491-499 260-268 (514)
151 PF09789 DUF2353: Uncharacteri 87.1 46 0.00099 35.5 24.9 37 263-299 191-227 (319)
152 PF06818 Fez1: Fez1; InterPro 87.1 34 0.00074 34.1 17.3 76 156-231 10-85 (202)
153 PF10498 IFT57: Intra-flagella 87.0 42 0.00091 36.5 17.8 33 159-191 230-262 (359)
154 KOG4593 Mitotic checkpoint pro 86.8 70 0.0015 37.4 50.3 36 408-443 607-642 (716)
155 PF11559 ADIP: Afadin- and alp 86.8 28 0.0006 32.7 17.4 66 246-311 79-148 (151)
156 PF09789 DUF2353: Uncharacteri 86.0 52 0.0011 35.1 25.4 53 261-313 126-178 (319)
157 PF15066 CAGE1: Cancer-associa 85.4 66 0.0014 35.8 27.5 28 284-311 480-507 (527)
158 PF04111 APG6: Autophagy prote 85.3 15 0.00032 39.2 13.2 10 489-498 292-301 (314)
159 KOG1899 LAR transmembrane tyro 85.2 49 0.0011 38.0 17.3 35 273-307 222-256 (861)
160 COG2433 Uncharacterized conser 85.1 14 0.0003 42.3 13.1 50 85-134 417-466 (652)
161 PF12777 MT: Microtubule-bindi 84.7 62 0.0013 34.9 21.8 37 43-79 3-39 (344)
162 COG2433 Uncharacterized conser 84.3 19 0.00041 41.2 13.8 44 101-144 419-462 (652)
163 KOG4360 Uncharacterized coiled 84.0 76 0.0016 35.8 17.8 50 414-463 356-405 (596)
164 KOG0962 DNA repair protein RAD 83.9 1.3E+02 0.0028 37.9 53.7 48 207-254 402-449 (1294)
165 COG4477 EzrA Negative regulato 83.8 84 0.0018 35.7 40.5 47 316-362 353-399 (570)
166 TIGR03017 EpsF chain length de 83.7 76 0.0017 35.1 22.8 27 286-312 339-365 (444)
167 PF04111 APG6: Autophagy prote 83.3 20 0.00043 38.3 13.1 14 486-499 237-250 (314)
168 PF09730 BicD: Microtubule-ass 82.7 1.1E+02 0.0024 36.3 44.2 142 85-230 36-181 (717)
169 PRK12705 hypothetical protein; 81.7 1E+02 0.0022 35.2 24.2 38 488-525 251-288 (508)
170 PRK10246 exonuclease subunit S 81.4 1.5E+02 0.0033 37.0 41.7 293 13-313 160-478 (1047)
171 PRK11281 hypothetical protein; 80.8 1.6E+02 0.0035 36.9 33.2 12 504-515 610-621 (1113)
172 PF06008 Laminin_I: Laminin Do 80.7 73 0.0016 32.9 31.5 34 241-274 186-219 (264)
173 TIGR01000 bacteriocin_acc bact 80.3 1E+02 0.0023 34.4 23.3 27 279-305 288-314 (457)
174 COG4026 Uncharacterized protei 79.9 24 0.00052 35.4 11.1 10 274-283 197-206 (290)
175 PF13514 AAA_27: AAA domain 79.6 1.8E+02 0.0038 36.6 40.9 48 85-132 668-715 (1111)
176 smart00787 Spc7 Spc7 kinetocho 78.3 1E+02 0.0022 33.0 30.0 27 39-65 68-94 (312)
177 PF10186 Atg14: UV radiation r 77.5 92 0.002 32.2 20.4 7 543-549 274-280 (302)
178 KOG4673 Transcription factor T 77.4 1.5E+02 0.0033 34.7 42.6 39 273-311 709-747 (961)
179 COG4026 Uncharacterized protei 76.5 56 0.0012 32.9 12.6 73 241-313 129-201 (290)
180 PRK10929 putative mechanosensi 73.4 2.5E+02 0.0055 35.2 30.2 17 43-59 43-59 (1109)
181 KOG0249 LAR-interacting protei 73.0 2E+02 0.0044 33.9 21.3 54 256-309 204-257 (916)
182 PF04582 Reo_sigmaC: Reovirus 72.6 6.8 0.00015 41.6 5.6 39 241-279 113-151 (326)
183 KOG4302 Microtubule-associated 72.5 2E+02 0.0044 33.8 21.9 39 275-313 160-198 (660)
184 TIGR01000 bacteriocin_acc bact 72.4 1.7E+02 0.0036 32.8 23.5 9 297-305 292-300 (457)
185 PF00769 ERM: Ezrin/radixin/mo 71.6 1.3E+02 0.0027 31.0 17.5 53 259-311 73-125 (246)
186 KOG4438 Centromere-associated 70.7 1.8E+02 0.0038 32.3 34.7 19 334-352 383-401 (446)
187 PF11559 ADIP: Afadin- and alp 70.4 95 0.0021 29.1 17.4 47 184-230 59-105 (151)
188 KOG4360 Uncharacterized coiled 69.1 2.1E+02 0.0045 32.5 19.0 28 239-266 274-301 (596)
189 KOG0249 LAR-interacting protei 68.6 2.5E+02 0.0054 33.2 20.7 9 572-580 630-638 (916)
190 PF15290 Syntaphilin: Golgi-lo 68.5 1.2E+02 0.0027 31.6 13.3 38 245-282 129-166 (305)
191 PF05546 She9_MDM33: She9 / Md 68.3 1.3E+02 0.0029 30.0 16.5 92 179-270 34-129 (207)
192 PF14197 Cep57_CLD_2: Centroso 68.0 65 0.0014 26.4 9.3 20 285-304 43-62 (69)
193 KOG4673 Transcription factor T 67.7 2.5E+02 0.0055 33.0 41.0 31 343-373 642-672 (961)
194 PF10234 Cluap1: Clusterin-ass 67.0 1.7E+02 0.0036 30.6 19.0 65 178-242 170-234 (267)
195 PF06005 DUF904: Protein of un 66.3 75 0.0016 26.3 11.1 41 182-222 23-63 (72)
196 PF00769 ERM: Ezrin/radixin/mo 66.0 1.6E+02 0.0036 30.2 17.9 32 398-434 182-213 (246)
197 PF09738 DUF2051: Double stran 64.4 1.1E+02 0.0023 32.6 12.5 96 236-331 80-175 (302)
198 PF12777 MT: Microtubule-bindi 64.2 56 0.0012 35.2 10.8 95 153-254 218-312 (344)
199 PF12795 MscS_porin: Mechanose 63.5 1.7E+02 0.0038 29.6 26.3 47 241-287 158-204 (240)
200 COG0497 RecN ATPase involved i 63.0 2.9E+02 0.0062 31.9 27.4 24 445-468 440-463 (557)
201 PF09787 Golgin_A5: Golgin sub 62.5 2.8E+02 0.0061 31.6 30.9 42 185-226 215-260 (511)
202 KOG1962 B-cell receptor-associ 62.4 1.3E+02 0.0028 30.4 11.9 59 245-303 149-207 (216)
203 PF05278 PEARLI-4: Arabidopsis 61.6 2.1E+02 0.0045 29.9 15.4 16 196-211 164-179 (269)
204 KOG1853 LIS1-interacting prote 61.3 2E+02 0.0044 29.6 22.2 21 504-524 240-260 (333)
205 PF12329 TMF_DNA_bd: TATA elem 61.1 95 0.0021 25.8 10.4 12 163-174 12-23 (74)
206 KOG4593 Mitotic checkpoint pro 60.1 3.5E+02 0.0075 31.9 54.8 31 578-608 681-712 (716)
207 PF15397 DUF4618: Domain of un 60.0 2.2E+02 0.0048 29.6 30.9 26 116-141 79-104 (258)
208 KOG4809 Rab6 GTPase-interactin 59.7 3.2E+02 0.0069 31.3 31.1 27 38-64 254-280 (654)
209 KOG1850 Myosin-like coiled-coi 58.6 2.6E+02 0.0055 29.9 31.8 54 25-78 88-142 (391)
210 PF06785 UPF0242: Uncharacteri 57.9 2.7E+02 0.0058 29.9 19.2 30 198-227 141-170 (401)
211 PF05276 SH3BP5: SH3 domain-bi 57.1 2.3E+02 0.0051 29.0 29.5 137 207-357 86-224 (239)
212 PF05384 DegS: Sensor protein 57.0 1.9E+02 0.004 27.8 21.5 63 197-259 90-152 (159)
213 PF05335 DUF745: Protein of un 55.8 2.2E+02 0.0047 28.2 17.2 63 248-310 110-172 (188)
214 PRK09841 cryptic autophosphory 55.4 4.3E+02 0.0093 31.6 18.9 23 286-308 367-389 (726)
215 PF14992 TMCO5: TMCO5 family 54.7 2.8E+02 0.006 29.1 14.5 18 113-130 27-44 (280)
216 TIGR02231 conserved hypothetic 54.4 1.2E+02 0.0027 34.5 11.9 36 235-270 126-161 (525)
217 PF09738 DUF2051: Double stran 53.7 2.7E+02 0.0059 29.6 13.3 67 149-222 105-171 (302)
218 PRK04406 hypothetical protein; 53.1 1.2E+02 0.0026 25.3 8.5 42 183-224 10-51 (75)
219 PF12761 End3: Actin cytoskele 53.0 1.1E+02 0.0024 30.4 9.5 58 209-266 136-193 (195)
220 KOG1899 LAR transmembrane tyro 52.8 4.4E+02 0.0094 30.8 21.3 27 160-186 178-204 (861)
221 cd00176 SPEC Spectrin repeats, 52.3 2.1E+02 0.0046 27.0 22.0 20 88-107 5-24 (213)
222 PRK10929 putative mechanosensi 52.1 5.9E+02 0.013 32.1 35.1 12 504-515 589-600 (1109)
223 KOG1962 B-cell receptor-associ 52.1 2.7E+02 0.0058 28.2 12.4 36 189-224 170-205 (216)
224 PF04012 PspA_IM30: PspA/IM30 52.0 2.5E+02 0.0055 27.9 21.4 9 113-121 60-68 (221)
225 PF15254 CCDC14: Coiled-coil d 51.9 4.9E+02 0.011 31.2 20.8 21 60-80 381-401 (861)
226 PF02994 Transposase_22: L1 tr 51.8 14 0.0003 40.3 3.6 41 247-287 144-184 (370)
227 PRK09841 cryptic autophosphory 51.6 4.9E+02 0.011 31.1 16.7 25 108-132 271-295 (726)
228 COG1382 GimC Prefoldin, chaper 51.5 1.9E+02 0.0042 26.4 13.1 9 126-134 28-36 (119)
229 KOG1853 LIS1-interacting prote 51.4 2.9E+02 0.0064 28.5 21.4 43 38-80 24-66 (333)
230 TIGR01069 mutS2 MutS2 family p 51.4 4E+02 0.0087 32.2 15.9 50 45-94 501-550 (771)
231 PRK12704 phosphodiesterase; Pr 51.1 4.3E+02 0.0094 30.3 23.2 26 39-64 22-47 (520)
232 PF10805 DUF2730: Protein of u 51.1 1.5E+02 0.0032 26.4 9.3 17 214-230 44-60 (106)
233 PF14073 Cep57_CLD: Centrosome 50.9 2.5E+02 0.0054 27.5 22.3 56 246-301 119-174 (178)
234 PRK11519 tyrosine kinase; Prov 49.5 5.2E+02 0.011 30.8 17.2 20 248-267 371-390 (719)
235 PF12795 MscS_porin: Mechanose 49.2 3E+02 0.0065 27.9 24.8 16 262-277 158-173 (240)
236 PRK11519 tyrosine kinase; Prov 49.1 5.3E+02 0.012 30.7 19.3 26 286-311 367-392 (719)
237 PF10212 TTKRSYEDQ: Predicted 48.8 4.6E+02 0.01 29.9 22.1 91 258-365 424-514 (518)
238 KOG0999 Microtubule-associated 48.7 4.7E+02 0.01 30.1 37.6 46 268-313 311-356 (772)
239 PRK00409 recombination and DNA 48.0 5.8E+02 0.013 30.9 16.6 48 45-92 506-553 (782)
240 KOG0239 Kinesin (KAR3 subfamil 47.7 5.5E+02 0.012 30.5 21.2 19 566-584 622-640 (670)
241 PRK04051 rps4p 30S ribosomal p 46.4 62 0.0014 31.6 6.7 81 506-592 48-129 (177)
242 COG5139 Uncharacterized conser 45.9 41 0.00089 35.2 5.5 84 462-558 209-311 (397)
243 PF06005 DUF904: Protein of un 45.9 1.7E+02 0.0038 24.2 10.3 42 259-300 9-50 (72)
244 PF02403 Seryl_tRNA_N: Seryl-t 45.3 2.1E+02 0.0046 25.0 10.0 26 241-266 75-100 (108)
245 PF08826 DMPK_coil: DMPK coile 44.6 1.6E+02 0.0036 23.6 8.8 58 222-283 4-61 (61)
246 PRK08311 putative RNA polymera 44.6 1.4E+02 0.003 30.6 9.2 129 481-623 75-233 (237)
247 PF14726 RTTN_N: Rotatin, an a 43.4 41 0.0009 29.6 4.5 45 533-577 28-72 (98)
248 PF05529 Bap31: B-cell recepto 43.0 1.9E+02 0.0042 28.2 9.8 14 150-163 126-139 (192)
249 PF04102 SlyX: SlyX; InterPro 42.4 1.6E+02 0.0035 24.0 7.6 43 186-228 6-48 (69)
250 PF14992 TMCO5: TMCO5 family 42.3 4.3E+02 0.0094 27.8 16.4 14 551-564 243-256 (280)
251 PRK00106 hypothetical protein; 42.3 5.9E+02 0.013 29.4 23.5 9 32-40 31-39 (535)
252 PF07111 HCR: Alpha helical co 42.1 6.6E+02 0.014 29.8 45.5 112 162-273 161-275 (739)
253 PF14073 Cep57_CLD: Centrosome 41.4 3.5E+02 0.0076 26.5 21.7 16 213-228 121-136 (178)
254 PF15290 Syntaphilin: Golgi-lo 40.8 4.5E+02 0.0098 27.6 15.8 37 277-313 133-169 (305)
255 PRK15178 Vi polysaccharide exp 40.5 5.7E+02 0.012 28.7 18.4 99 205-308 286-384 (434)
256 PRK02119 hypothetical protein; 40.4 2.1E+02 0.0046 23.7 8.2 36 186-221 11-46 (73)
257 TIGR03319 YmdA_YtgF conserved 40.2 6.2E+02 0.014 29.0 23.9 14 512-525 477-490 (514)
258 PF09787 Golgin_A5: Golgin sub 39.3 6.3E+02 0.014 28.8 34.5 18 443-460 450-467 (511)
259 PF09730 BicD: Microtubule-ass 39.1 7.5E+02 0.016 29.6 47.2 34 148-181 127-160 (717)
260 PF10212 TTKRSYEDQ: Predicted 39.0 6.4E+02 0.014 28.8 22.0 36 95-130 300-337 (518)
261 PF10805 DUF2730: Protein of u 38.8 2.3E+02 0.0051 25.1 8.7 44 182-225 47-92 (106)
262 COG5283 Phage-related tail pro 38.7 9.2E+02 0.02 30.5 21.4 43 189-231 62-104 (1213)
263 PF05335 DUF745: Protein of un 37.8 4.1E+02 0.0089 26.2 17.3 28 260-287 143-170 (188)
264 TIGR01018 rpsD_arch ribosomal 37.2 1E+02 0.0022 29.8 6.4 60 533-592 69-130 (162)
265 PF12072 DUF3552: Domain of un 37.0 4.2E+02 0.0092 26.1 23.4 40 35-74 14-53 (201)
266 PF07989 Microtub_assoc: Micro 36.9 2.5E+02 0.0054 23.4 8.6 64 250-313 3-67 (75)
267 PF04912 Dynamitin: Dynamitin 36.9 6E+02 0.013 27.8 18.6 172 30-225 205-388 (388)
268 COG1842 PspA Phage shock prote 36.8 4.7E+02 0.01 26.6 21.2 170 88-258 29-222 (225)
269 PF07851 TMPIT: TMPIT-like pro 36.6 4E+02 0.0087 28.7 11.4 56 235-290 6-61 (330)
270 PF05278 PEARLI-4: Arabidopsis 36.5 5.2E+02 0.011 27.0 15.0 35 239-273 220-254 (269)
271 TIGR02977 phageshock_pspA phag 35.8 4.6E+02 0.01 26.2 22.5 183 88-271 29-218 (219)
272 PF06120 Phage_HK97_TLTM: Tail 35.5 5.7E+02 0.012 27.2 17.0 40 242-281 129-168 (301)
273 KOG3433 Protein involved in me 35.2 3.4E+02 0.0073 26.7 9.5 67 247-313 74-140 (203)
274 PF05008 V-SNARE: Vesicle tran 34.4 2.6E+02 0.0056 22.9 8.9 52 207-264 27-78 (79)
275 KOG4302 Microtubule-associated 34.3 8.5E+02 0.018 28.8 23.2 32 568-599 619-651 (660)
276 KOG2991 Splicing regulator [RN 34.3 5.5E+02 0.012 26.6 23.0 16 66-81 115-130 (330)
277 KOG1937 Uncharacterized conser 32.7 7.6E+02 0.016 27.8 29.5 18 60-77 301-318 (521)
278 KOG0972 Huntingtin interacting 32.0 6.4E+02 0.014 26.7 15.7 142 43-188 225-367 (384)
279 PF04871 Uso1_p115_C: Uso1 / p 31.7 4.3E+02 0.0093 24.6 13.7 101 234-334 2-111 (136)
280 PF02403 Seryl_tRNA_N: Seryl-t 31.5 3.5E+02 0.0077 23.6 11.3 27 245-271 34-60 (108)
281 PF03148 Tektin: Tektin family 31.4 7.3E+02 0.016 27.2 33.3 283 5-291 45-382 (384)
282 PF06810 Phage_GP20: Phage min 31.1 4.4E+02 0.0096 25.1 9.8 9 204-212 57-65 (155)
283 PF12761 End3: Actin cytoskele 31.0 3.7E+02 0.008 26.7 9.3 34 111-144 160-193 (195)
284 PLN02939 transferase, transfer 30.6 1.1E+03 0.025 29.2 26.4 201 43-262 165-398 (977)
285 PF05008 V-SNARE: Vesicle tran 30.2 3.1E+02 0.0066 22.4 8.8 31 244-274 22-52 (79)
286 cd03561 VHS VHS domain family; 30.0 3.8E+02 0.0083 24.4 9.0 75 444-527 19-117 (133)
287 PF05266 DUF724: Protein of un 30.0 5.5E+02 0.012 25.3 16.3 13 120-132 71-83 (190)
288 TIGR02894 DNA_bind_RsfA transc 29.9 3.7E+02 0.0081 25.9 8.8 54 249-302 99-152 (161)
289 PF00790 VHS: VHS domain; Int 29.6 1.7E+02 0.0036 27.1 6.6 77 444-529 24-125 (140)
290 PF07851 TMPIT: TMPIT-like pro 29.5 5.4E+02 0.012 27.8 11.0 7 573-579 305-311 (330)
291 KOG4603 TBP-1 interacting prot 29.2 5.4E+02 0.012 25.1 9.7 64 177-240 79-144 (201)
292 PF01920 Prefoldin_2: Prefoldi 29.0 3.7E+02 0.008 23.0 12.6 25 198-222 69-93 (106)
293 PRK02793 phi X174 lysis protei 28.9 3.3E+02 0.0072 22.4 8.1 34 186-219 10-43 (72)
294 PF10267 Tmemb_cc2: Predicted 28.5 8.4E+02 0.018 27.0 15.3 10 213-222 259-268 (395)
295 smart00509 TFS2N Domain in the 28.3 1.1E+02 0.0024 25.3 4.6 21 505-525 54-74 (75)
296 PF04728 LPP: Lipoprotein leuc 28.1 3E+02 0.0066 21.7 7.2 33 95-127 8-40 (56)
297 COG3074 Uncharacterized protei 27.7 3.5E+02 0.0076 22.3 10.4 38 185-222 26-63 (79)
298 TIGR02895 spore_sigI RNA polym 27.3 4.3E+02 0.0094 26.6 9.5 141 464-619 50-218 (218)
299 PF15397 DUF4618: Domain of un 27.3 7.3E+02 0.016 25.8 31.4 11 241-251 150-160 (258)
300 PRK06771 hypothetical protein; 27.1 75 0.0016 27.7 3.4 35 568-602 39-77 (93)
301 KOG2196 Nuclear porin [Nuclear 27.1 7.1E+02 0.015 25.6 17.8 67 62-128 85-151 (254)
302 PF10234 Cluap1: Clusterin-ass 26.5 7.6E+02 0.016 25.8 19.2 61 250-310 193-260 (267)
303 TIGR01010 BexC_CtrB_KpsE polys 26.5 8.2E+02 0.018 26.2 18.4 25 288-312 277-301 (362)
304 PF07111 HCR: Alpha helical co 26.4 1.2E+03 0.025 27.9 47.6 40 95-134 188-227 (739)
305 PRK00409 recombination and DNA 26.4 1.2E+03 0.026 28.2 15.8 6 68-73 153-158 (782)
306 KOG0982 Centrosomal protein Nu 26.4 9.4E+02 0.02 26.9 26.0 18 63-80 219-236 (502)
307 COG4477 EzrA Negative regulato 26.3 1E+03 0.023 27.3 46.7 62 60-121 165-228 (570)
308 PF09755 DUF2046: Uncharacteri 26.0 8.3E+02 0.018 26.1 35.2 8 66-73 27-34 (310)
309 KOG4637 Adaptor for phosphoino 25.9 9.1E+02 0.02 26.5 18.5 14 446-459 341-354 (464)
310 KOG2264 Exostosin EXT1L [Signa 25.9 4.2E+02 0.009 30.6 9.6 38 270-307 109-146 (907)
311 PF15254 CCDC14: Coiled-coil d 25.5 1.2E+03 0.027 28.0 26.5 31 276-306 509-539 (861)
312 TIGR03545 conserved hypothetic 24.9 7.5E+02 0.016 28.7 11.9 14 460-473 389-402 (555)
313 PF03683 UPF0175: Uncharacteri 24.8 74 0.0016 26.4 2.9 27 531-557 45-71 (76)
314 KOG4657 Uncharacterized conser 24.8 7.5E+02 0.016 25.2 15.7 108 196-304 35-142 (246)
315 PF04949 Transcrip_act: Transc 24.8 6.1E+02 0.013 24.1 17.7 43 268-310 84-126 (159)
316 cd00183 TFIIS_I N-terminal dom 24.1 1.4E+02 0.0031 24.6 4.5 20 505-524 56-75 (76)
317 PF15035 Rootletin: Ciliary ro 23.7 7E+02 0.015 24.4 13.6 34 280-313 86-119 (182)
318 KOG1937 Uncharacterized conser 23.3 1.1E+03 0.024 26.6 34.8 41 182-222 387-427 (521)
319 PRK11546 zraP zinc resistance 23.1 5.3E+02 0.012 24.3 8.5 27 202-228 58-84 (143)
320 KOG1793 Uncharacterized conser 23.1 1.3E+02 0.0029 32.9 5.1 60 462-524 212-290 (417)
321 COG4487 Uncharacterized protei 23.0 1.1E+03 0.024 26.4 25.3 19 507-525 377-395 (438)
322 PF10267 Tmemb_cc2: Predicted 22.5 1.1E+03 0.023 26.2 15.6 25 50-74 53-77 (395)
323 KOG4809 Rab6 GTPase-interactin 22.5 1.2E+03 0.027 26.8 31.5 12 31-42 174-185 (654)
324 KOG2005 26S proteasome regulat 22.3 6.6E+02 0.014 29.8 10.5 119 485-603 217-368 (878)
325 KOG2264 Exostosin EXT1L [Signa 22.2 6.1E+02 0.013 29.3 10.0 8 454-461 366-373 (907)
326 PF13514 AAA_27: AAA domain 22.0 1.6E+03 0.036 28.2 51.3 9 449-457 978-986 (1111)
327 PF08172 CASP_C: CASP C termin 21.8 5E+02 0.011 26.8 8.8 33 195-227 3-35 (248)
328 KOG1850 Myosin-like coiled-coi 21.6 1E+03 0.022 25.6 35.3 98 202-299 226-323 (391)
329 TIGR03752 conj_TIGR03752 integ 21.2 1.1E+03 0.023 26.8 11.7 40 189-228 64-103 (472)
330 TIGR03752 conj_TIGR03752 integ 21.2 1.2E+03 0.025 26.5 12.0 6 532-537 367-372 (472)
331 TIGR00414 serS seryl-tRNA synt 21.1 7.2E+02 0.016 27.6 10.6 24 502-525 292-315 (418)
332 COG2117 Predicted subunit of t 21.1 85 0.0019 30.3 2.8 62 528-604 11-88 (198)
333 PF09755 DUF2046: Uncharacteri 21.1 1E+03 0.022 25.4 35.1 12 62-73 30-41 (310)
334 cd07627 BAR_Vps5p The Bin/Amph 21.0 8.3E+02 0.018 24.3 27.8 44 60-103 12-55 (216)
335 PF11570 E2R135: Coiled-coil r 20.8 6.8E+02 0.015 23.2 14.4 25 182-206 82-106 (136)
336 PF05791 Bacillus_HBL: Bacillu 20.7 7.9E+02 0.017 23.9 17.6 36 39-74 46-81 (184)
337 KOG2991 Splicing regulator [RN 20.5 9.7E+02 0.021 24.9 24.0 26 262-287 272-297 (330)
338 PF13094 CENP-Q: CENP-Q, a CEN 20.5 7E+02 0.015 23.4 9.1 67 207-273 22-88 (160)
339 PF02183 HALZ: Homeobox associ 20.3 3.7E+02 0.008 20.1 5.5 43 181-223 2-44 (45)
340 KOG4460 Nuclear pore complex, 20.3 1.4E+03 0.03 26.5 18.2 168 78-247 568-737 (741)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=9e-61 Score=493.34 Aligned_cols=196 Identities=38% Similarity=0.607 Sum_probs=184.5
Q ss_pred hhHHHHHHHHHH---------HHHhhH---hhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchhhHhHHHHHH
Q 041911 426 LREKEFDSIRKA---------VEDHSK---NLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCIL 493 (624)
Q Consensus 426 ~~~~q~~~~~~~---------~~~~~~---~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cil 493 (624)
....++..+|.. +.+|.+ ++|.++|+||++|||||+||||||+|||+++++. ++++++.++||+||+
T Consensus 10 ~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~-~~~~~~~~~r~~cil 88 (290)
T PF07899_consen 10 KPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKN-KKDSKLVDVRRACIL 88 (290)
T ss_pred chHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCcccc-ccCcchhhHHHHHHH
Confidence 456788999987 333333 5999999999999999999999999999999866 677788999999999
Q ss_pred HHHhhhhcCCCCCHhHHHHHHHHHHHHHHhh-hhhccChHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhccchHHHH
Q 041911 494 LLEQLSTVAPEINAQVRDEAMKVAGEWKKKM-RVAVENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFC 572 (624)
Q Consensus 494 LLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~~-~~~~~~~~ea~~fL~lla~ygl~s~fd~~el~~l~~~v~~~~~~~~L~ 572 (624)
|||+|+.++|.++|+|+++|+++|.+||++| +.+++++++|||||||||+|||+|+||.|||++||.+|++|+|||+||
T Consensus 89 LLE~L~~~~~~is~~vke~A~~lA~~WK~~l~~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~Lv~~va~~~~a~~L~ 168 (290)
T PF07899_consen 89 LLEQLMRISPEISPEVKEEAKKLAEEWKSKLDGVNNENSLEALGFLQLLAAFGIVSEFDEDELLKLVVSVARRKQAPELC 168 (290)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCccccCHHHHHHHHHHhcchHhhHHHH
Confidence 9999999999999999999999999999999 777889999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCCCCCCCcccchhhhhCC
Q 041911 573 QTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGM 622 (624)
Q Consensus 573 ~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~f~p~~llk~y~~~~ 622 (624)
++|||++||||||+ ||++|+||+||+|||+|||+|+|||||||++||+++
T Consensus 169 ~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~ 219 (290)
T PF07899_consen 169 RSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDS 219 (290)
T ss_pred HHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999975
No 2
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=8.5e-19 Score=197.53 Aligned_cols=304 Identities=13% Similarity=0.229 Sum_probs=268.9
Q ss_pred hhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHH----------H
Q 041911 14 VAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK----QSNYVDVKIRLLDQRAKEI----------E 79 (624)
Q Consensus 14 ~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r----l~~Eie~kl~~L~~qa~~~----------e 79 (624)
+.--||.+++ .|+||||||+||+.+|+.|.++|++++.+|.+ +-.||.|.+.+||.+-..+ +
T Consensus 153 VLNMKp~EIL----sMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle 228 (1174)
T KOG0933|consen 153 VLNMKPSEIL----SMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILPRLEKLREERSQYLEYQKINRDLE 228 (1174)
T ss_pred hhcCCcHHHH----HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446888888 99999999999999999999999999999999 8899999999999984433 3
Q ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH----HHHHHHHHHH-HHHHHH
Q 041911 80 SKEI-----KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES----LNIKKEELSS-VEEWIN 149 (624)
Q Consensus 80 ~~~~-----e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~----l~~k~~eL~e-l~e~~~ 149 (624)
++.+ +|.........+...+......+..+.........++..++.++..+... +++....|+. +....+
T Consensus 229 ~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~ 308 (1174)
T KOG0933|consen 229 RLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQN 308 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 3322 45566667778889999999999999999999999999999999998775 4444456666 666677
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911 150 KCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229 (624)
Q Consensus 150 eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~ 229 (624)
...+..+.+..+...|....++++.+.+.+.+....+..+++.+......+...+....+....++..++.++++.+|++
T Consensus 309 ~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~S 388 (1174)
T KOG0933|consen 309 EITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLS 388 (1174)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 230 LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR 309 (624)
Q Consensus 230 ~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ 309 (624)
+.+ .+-.+|++|+..++..+..+.+++.+..++++|+.++++..++++.++..++..-.++++..+.+++.+.
T Consensus 389 s~~-------~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~ 461 (1174)
T KOG0933|consen 389 SNE-------DEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLK 461 (1174)
T ss_pred cCc-------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 974 3788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH------HHHhhhhhHHhhhHH
Q 041911 310 KYIE------ELSQDLASKDKQLKF 328 (624)
Q Consensus 310 kele------~~~~el~sk~~~~~~ 328 (624)
+.+. .+.+.|.-+..++.+
T Consensus 462 ~~l~~l~~~~~~~e~l~q~~~~l~~ 486 (1174)
T KOG0933|consen 462 KRLQSLGYKIGQEEALKQRRAKLHE 486 (1174)
T ss_pred HHHHhcCCCcchHHHHHHHHHHHHH
Confidence 9986 566777666666643
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.75 E-value=4.7e-14 Score=172.53 Aligned_cols=117 Identities=22% Similarity=0.319 Sum_probs=81.6
Q ss_pred hhhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH---H--
Q 041911 13 RVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI---K-- 84 (624)
Q Consensus 13 ~~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~---e-- 84 (624)
.++..||+++| .||||||||++|+.|+.+|+.+|+.|+.|+++ ++.||++++++|+.|+..+.+|.. +
T Consensus 148 ~i~~~kp~err----~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~ 223 (1163)
T COG1196 148 EIINAKPEERR----KLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELR 223 (1163)
T ss_pred HHHcCCHHHHH----HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35679999999 79999999999999999999999999999999 999999999999999999988733 2
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911 85 ---LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES 133 (624)
Q Consensus 85 ---~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~ 133 (624)
+..+...+..+...+......+..+...+..+...+.....++..++..
T Consensus 224 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 275 (1163)
T COG1196 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE 275 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333334444444444444444433333333333333333333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.61 E-value=5.1e-11 Score=146.29 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred hhhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH-HHHHH
Q 041911 13 RVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI-KLVFV 88 (624)
Q Consensus 13 ~~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~-e~~~~ 88 (624)
.++..+|...| .+|+++|||..|..+..+|...|..+..++.+ .+.++.+++++|+++...++++.. +....
T Consensus 146 ~~~~~~~~~r~----~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~ 221 (1164)
T TIGR02169 146 DFISMSPVERR----KIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKR 221 (1164)
T ss_pred HHHCCCHHHHH----HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788877 88999999999999999999999999999988 778888888888877666555422 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911 89 EKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL 134 (624)
Q Consensus 89 ~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l 134 (624)
...+......+......+..+...+..+..++..+..++..+...+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~ 267 (1164)
T TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRL 267 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333333444444444444444444444444444444444333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.44 E-value=4.9e-09 Score=128.75 Aligned_cols=253 Identities=22% Similarity=0.276 Sum_probs=122.2
Q ss_pred ccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHH-----
Q 041911 16 ESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEI---KLVF----- 87 (624)
Q Consensus 16 ~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~---e~~~----- 87 (624)
..+|..++ .+|++++|+..|..++..+...|..+.. ++.+++.++.+|+.|+..+++|.. +|..
T Consensus 151 ~~~~~~~~----~~~~~~~~~~~~~~~~~~t~~nL~r~~d----~l~el~~ql~~L~~q~~~a~~~~~~~~~~~~l~~~l 222 (1179)
T TIGR02168 151 EAKPEERR----AIFEEAAGISKYKERRKETERKLERTRE----NLDRLEDILNELERQLKSLERQAEKAERYKELKAEL 222 (1179)
T ss_pred cCCHHHHH----HHHHHHccHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44787777 9999999999999877666655544433 667888999999999888877633 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Q 041911 88 VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVE----EWINKCQAYQKELQLLKN 163 (624)
Q Consensus 88 ~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~----e~~~eL~~~~~~l~~~~~ 163 (624)
....+..+...+......+..+...+..+..++..+..++..+...+......+..+. .....+......+.....
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~ 302 (1179)
T TIGR02168 223 RELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ 302 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2223334445555555555555555555555555555555555544433333332221 111222233333333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHH
Q 041911 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE 243 (624)
Q Consensus 164 ~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~ 243 (624)
.+......+..+...+..+...+......+..+...+..+...+......+......+......+......+.....+..
T Consensus 303 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 382 (1179)
T TIGR02168 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333333333333333223333333333
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 041911 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENE 276 (624)
Q Consensus 244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~eke 276 (624)
.+..++..+...+..+...+..+...+..+..+
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 415 (1179)
T TIGR02168 383 TLRSKVAQLELQIASLNNEIERLEARLERLEDR 415 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=99.37 E-value=6.7e-07 Score=107.44 Aligned_cols=52 Identities=4% Similarity=-0.089 Sum_probs=28.8
Q ss_pred hccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 15 AESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQR 74 (624)
Q Consensus 15 ~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~q 74 (624)
...+|...+ .||+++.||..|+.-+. .+..+...+.++...+..++..++.+
T Consensus 144 l~~~p~~R~----~ii~~l~~l~~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (880)
T PRK02224 144 INATPSDRQ----DMIDDLLQLGKLEEYRE----RASDARLGVERVLSDQRGSLDQLKAQ 195 (880)
T ss_pred HcCCHHHHH----HHHHHHhCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666 88889999988865333 33333333343334444444444443
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.23 E-value=4.8e-07 Score=111.39 Aligned_cols=97 Identities=18% Similarity=0.146 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhH
Q 041911 47 EEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI---KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCEL 120 (624)
Q Consensus 47 ~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~---e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Ei 120 (624)
...+..+..+|.+ .+.++..++.+|+.|+..++++.. +|..+...+ ....+......+..+...+..+..++
T Consensus 169 ~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 246 (1164)
T TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK--REYEGYELLKEKEALERQKEAIERQL 246 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888988 999999999999999999887754 344333333 23344455556666666677777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 121 HLKENELNSLSESLNIKKEELSSVE 145 (624)
Q Consensus 121 e~le~el~~le~~l~~k~~eL~el~ 145 (624)
..+..++..+...+......+....
T Consensus 247 ~~~~~~~~~l~~~l~~~~~~~~~~~ 271 (1164)
T TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIE 271 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776666655544444443
No 8
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.16 E-value=2e-05 Score=98.48 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=77.0
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHH
Q 041911 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLERE 238 (624)
Q Consensus 159 ~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~ 238 (624)
..+.+.+.....+...+.+....++..+++.+..+...+............+..++....+.+..+...+......+...
T Consensus 995 ~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kk 1074 (1930)
T KOG0161|consen 995 RELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKK 1074 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444445555
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEI 308 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~ 308 (624)
..++..+..++.+....+..+...+.++...|..+..+++.......++++....+..+++....+++..
T Consensus 1075 e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1075 ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555666666666665555555544
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=99.13 E-value=6.3e-05 Score=90.54 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred chHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHH
Q 041911 18 KKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK------QSNYVDVKIRLLDQR 74 (624)
Q Consensus 18 k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r------l~~Eie~kl~~L~~q 74 (624)
.|...+ .+|+++.|+..|+.-+..+..........+.. -+.++..++..++.+
T Consensus 143 ~~~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~ 201 (880)
T PRK03918 143 SDESRE----KVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKE 201 (880)
T ss_pred CcHHHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 354444 78999999999999888887777776666666 234455555555544
No 10
>PRK01156 chromosome segregation protein; Provisional
Probab=99.13 E-value=5.7e-05 Score=91.18 Aligned_cols=42 Identities=5% Similarity=0.158 Sum_probs=30.6
Q ss_pred hhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911 14 VAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 14 ~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r 59 (624)
++...|...+ .+|+++.||..|..-++.+...+...+..+..
T Consensus 143 l~~~~~~~r~----~~ld~~~~~~~~~~~~~~~~~~~~~~~~ei~~ 184 (895)
T PRK01156 143 LISGDPAQRK----KILDEILEINSLERNYDKLKDVIDMLRAEISN 184 (895)
T ss_pred HHhCCHHHHH----HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777 77888889999998777777666666665444
No 11
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.13 E-value=1.2e-06 Score=100.47 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=108.7
Q ss_pred HHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 041911 28 MAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI--------KLVFVEKKIEDCN 96 (624)
Q Consensus 28 ~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~--------e~~~~~~~lee~~ 96 (624)
.|..|.|||+-|+.|+++.++.|+.|.++=.. ++..|+.+|..|+.+-++++.|.+ +|..+...+.+..
T Consensus 157 ~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~ 236 (1200)
T KOG0964|consen 157 ELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEIN 236 (1200)
T ss_pred HHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHH
Confidence 68899999999999999999999999987776 999999999999999888887732 4666666677777
Q ss_pred HHHHHHHHHHHHHHcH-------hhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHH
Q 041911 97 GELECKEKELGLVQKX-------IGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKEL----QLLKNLI 165 (624)
Q Consensus 97 ~~Le~~e~~l~~l~~~-------I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l----~~~~~~i 165 (624)
..+..+.......-.. +.....++..+..++..++..+..+..+.+.+......+....+.+ ..+..+|
T Consensus 237 ~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i 316 (1200)
T KOG0964|consen 237 GELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQI 316 (1200)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHh
Confidence 7766666654433333 3333333333333333333333333232222222222222222222 2222222
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 041911 166 KECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKS 220 (624)
Q Consensus 166 eE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~ 220 (624)
.--..........++.+...|.++..++....-.+..+..+-......|..++..
T Consensus 317 ~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~ 371 (1200)
T KOG0964|consen 317 TGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQK 371 (1200)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 2222233333334444555555555555555555554444444444444444433
No 12
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.11 E-value=2e-06 Score=106.63 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=70.4
Q ss_pred HHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 041911 28 MAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESKEI---KLVFVEKKIEDCNGELEC 101 (624)
Q Consensus 28 ~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~~~---e~~~~~~~lee~~~~Le~ 101 (624)
.|||||||++ .+|.+|.++|..++.|+.+ ++.||.+++.+|+.++..+..+.. ++......+..+...+..
T Consensus 283 ~liEEAag~r---~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeE 359 (1486)
T PRK04863 283 VHLEEALELR---RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEE 359 (1486)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998855 9999999999999999999 899999999999999888877633 222333444444444444
Q ss_pred HHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911 102 KEKELGLVQKXIGECNCELHLKENELNSLSESL 134 (624)
Q Consensus 102 ~e~~l~~l~~~I~ele~Eie~le~el~~le~~l 134 (624)
+...+......+.++...+..+..++..++..+
T Consensus 360 Lee~Lee~eeeLeeleeeleeleeEleelEeeL 392 (1486)
T PRK04863 360 LEERLEEQNEVVEEADEQQEENEARAEAAEEEV 392 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444433
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.05 E-value=0.00019 Score=90.03 Aligned_cols=102 Identities=22% Similarity=0.232 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHH-----------H-------HHHHHHHHHHHHHHHHHHH
Q 041911 42 QWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIES-----------K-------EIKLVFVEKKIEDCNGELE 100 (624)
Q Consensus 42 rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~-----------~-------~~e~~~~~~~lee~~~~Le 100 (624)
.+......|+.++..+++ ...++++...+|..+...+.. + ..++.....+++.....+.
T Consensus 1014 ~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~ 1093 (1930)
T KOG0161|consen 1014 AKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVA 1093 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333344444444444444 666666666666665311110 0 0122233334444444444
Q ss_pred HHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Q 041911 101 CKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS 143 (624)
Q Consensus 101 ~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e 143 (624)
.+...+..+...|.++..+++.-+...+.++.....+..++.+
T Consensus 1094 ~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1094 QLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333333333
No 14
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=0.00042 Score=86.87 Aligned_cols=25 Identities=12% Similarity=0.031 Sum_probs=15.7
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911 35 SVLLFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 35 GI~~y~~rk~eA~k~L~~te~nL~r 59 (624)
++.-|...-..+...++....++..
T Consensus 633 ~~~~~~~~L~~~~~~l~~~~~~~~~ 657 (1311)
T TIGR00606 633 GSQDEESDLERLKEEIEKSSKQRAM 657 (1311)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666655443
No 15
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.86 E-value=4.5e-06 Score=85.03 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041911 285 DSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLA 320 (624)
Q Consensus 285 ~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~ 320 (624)
...+.++..+..+|...+..+..++.+|+..+.+|.
T Consensus 200 ~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~ 235 (237)
T PF00261_consen 200 KKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELN 235 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333344444444444444444444444444443
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=0.0015 Score=82.11 Aligned_cols=31 Identities=10% Similarity=0.125 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q 041911 360 EVELKKNQLNLVQHESNLVQTRTIGYLKEFK 390 (624)
Q Consensus 360 e~e~k~~~~~~~~~~~~~~~~~~~~~~k~~~ 390 (624)
.+...-..+......+.+......|.++.++
T Consensus 1051 ~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1051 QMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555556665544
No 17
>PRK01156 chromosome segregation protein; Provisional
Probab=98.80 E-value=0.0013 Score=79.40 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041911 201 SSIQTLIEDYEEVLRDKE 218 (624)
Q Consensus 201 e~l~~eieel~eele~kE 218 (624)
..+...+..+...+....
T Consensus 419 ~~l~~~i~~l~~~i~~l~ 436 (895)
T PRK01156 419 QDISSKVSSLNQRIRALR 436 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.78 E-value=0.00043 Score=85.77 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR 309 (624)
Q Consensus 247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ 309 (624)
.++..+...+...+..++.+...+..+..+.......+...+.+...+.+++......+..+.
T Consensus 842 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333333
No 19
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.78 E-value=1.2e-05 Score=81.94 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 243 ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299 (624)
Q Consensus 243 ~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle 299 (624)
..|+.++..+..+|..+++..+.....+..++.++...+.+|...+..+..+..+|+
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444443
No 20
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=0.00044 Score=80.37 Aligned_cols=245 Identities=15% Similarity=0.195 Sum_probs=124.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKE 139 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~ 139 (624)
-+..++.+|..|+.++.++..+..+|......+.-+..+++.-.-. .+.+.+..+..++...+.++......+.....
T Consensus 692 el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~--~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~ 769 (1174)
T KOG0933|consen 692 ELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFH--KLLDDLKELLEEVEESEQQIKEKERALKKCED 769 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777666555554444444444333322211 22233333333333333333333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041911 140 ELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEK 219 (624)
Q Consensus 140 eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe 219 (624)
++..++....+ --..-...+.++.+++.....+.++-....+..+..+..++.+.+.++..+......+...+.
T Consensus 770 ~i~~lE~~~~d------~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 770 KISTLEKKMKD------AKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred HHHHHHHHHhH------hhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221111110 111233344444444444444555555555555556666666666666666666666666666
Q ss_pred hHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 220 SYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299 (624)
Q Consensus 220 ~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle 299 (624)
.+..+...+......+.....+......++++....+....+++.......+-+..+...-+-+.+....++..+..+-.
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~ 923 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA 923 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH
Confidence 66666666666666666666666666666666666666666666666555555555555545455555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 041911 300 LKKRELNEIRKYI 312 (624)
Q Consensus 300 ~k~~ele~~~kel 312 (624)
..++.++.+.++.
T Consensus 924 ~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 924 NARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555544443
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=0.00033 Score=82.55 Aligned_cols=130 Identities=21% Similarity=0.281 Sum_probs=74.6
Q ss_pred HHhhHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhHhhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchh
Q 041911 405 DRSQDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDV 484 (624)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~ 484 (624)
+.+.++..+...+..||-+++.--...+...+.+..-++---.||.++|..=+---+-+...|-. .|+.+.
T Consensus 1096 ~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLkemYQmIT~-------GGdAeL-- 1166 (1293)
T KOG0996|consen 1096 GVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMITL-------GGDAEL-- 1166 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCccee--
Confidence 46777888888888888887777766666666655555545567888777655554544444431 122221
Q ss_pred hHhHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHHHHHHhhhhhc-cChHHHHHHHHHHHHhcCCCCCChHHH
Q 041911 485 SIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMRVAV-ENSLEVLGFLHLLAAYRLAPAFDGEEL 555 (624)
Q Consensus 485 ~~~r~~cilLLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~~~~~~-~~~~ea~~fL~lla~ygl~s~fd~~el 555 (624)
=|+.+|.+.+-.|..+|+ ---..||.--.-.| +..|-.+||.--|--|-=-+-|==|||
T Consensus 1167 --------ElVDslDPFseGV~FSVr----PpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPlYVMDEI 1226 (1293)
T KOG0996|consen 1167 --------ELVDSLDPFSEGVMFSVR----PPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEI 1226 (1293)
T ss_pred --------EeeccCCCcccCceEEee----CchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCceehhhH
Confidence 122234333222332322 11247996544444 467888888777777776666644554
No 22
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=0.0025 Score=75.43 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=35.9
Q ss_pred HHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Q 041911 28 MAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEI 78 (624)
Q Consensus 28 ~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~ 78 (624)
..+|+.-||.+|..--++..+.+......... .+.=.++....|+.--..+
T Consensus 254 EYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~a 307 (1293)
T KOG0996|consen 254 EYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEA 307 (1293)
T ss_pred HHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 78899999999999999888888876666555 4444444555555543343
No 23
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.38 E-value=0.0016 Score=76.83 Aligned_cols=224 Identities=18% Similarity=0.279 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH------HHHHHHHHHH--HHHHHHHHHHHHH
Q 041911 85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES------LNIKKEELSS--VEEWINKCQAYQK 156 (624)
Q Consensus 85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~------l~~k~~eL~e--l~e~~~eL~~~~~ 156 (624)
+..+...+..+...+......+......|..+.+.+...+..+..++.- +..+...+.. +.....++.....
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~ 288 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEE 288 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666666666666666666666666654432 2223333333 3344445555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhH
Q 041911 157 ELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLE 236 (624)
Q Consensus 157 ~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie 236 (624)
.+......++++..+++.....+.++...+.+.++++..+..+...-..+++...+.+..+..........+......|.
T Consensus 289 ~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~ 368 (1074)
T KOG0250|consen 289 EIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIR 368 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666555555555555555555555555555555555555555555555544445445544444444
Q ss_pred HHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 237 REKKELELTQSSIKELSVKF-HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEI 308 (624)
Q Consensus 237 ~~~~el~~le~ql~el~~eL-~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~ 308 (624)
........++.++.++.... ..+..++.+...+++.+.++++..+..+.++..+...+..++...+.+...+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555555555555555554 4444444444444444444444444444444444444444444444333333
No 24
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.36 E-value=0.014 Score=68.64 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 257 HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK 292 (624)
Q Consensus 257 ~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~ 292 (624)
.....++..+..++..++.++.+..-.+...+.++.
T Consensus 468 e~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s 503 (775)
T PF10174_consen 468 ETYQKELKELKAKLESLQKELSEKELQLEDAKEEAS 503 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHH
Confidence 333344444444444444444444333333333333
No 25
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.33 E-value=0.018 Score=68.38 Aligned_cols=16 Identities=0% Similarity=-0.228 Sum_probs=11.1
Q ss_pred hhHHhHHHHhhhCCCh
Q 041911 444 NLLLQFFDTVKRARDP 459 (624)
Q Consensus 444 ~l~~e~~~Al~~a~dP 459 (624)
.+..+.|.|...||.-
T Consensus 840 ~~~e~~~ka~~~cp~~ 855 (1074)
T KOG0250|consen 840 PRAEEDQKARTECPEE 855 (1074)
T ss_pred chhhhCchhhhhCccc
Confidence 5667777777777754
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.30 E-value=0.00037 Score=79.63 Aligned_cols=39 Identities=5% Similarity=-0.035 Sum_probs=26.4
Q ss_pred cchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911 17 SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 17 ~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r 59 (624)
.++...+ .+++...|+..|..-...+-..+...+..+..
T Consensus 147 ~~~~er~----~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~ 185 (562)
T PHA02562 147 LSAPARR----KLVEDLLDISVLSEMDKLNKDKIRELNQQIQT 185 (562)
T ss_pred CChHhHH----HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 88899999999977665555555555555554
No 27
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=0.0097 Score=70.16 Aligned_cols=34 Identities=3% Similarity=0.154 Sum_probs=30.5
Q ss_pred HHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911 26 FDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 26 ~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r 59 (624)
+..|||+.+|=..|+...++....+.+.+.....
T Consensus 145 lt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~ 178 (1141)
T KOG0018|consen 145 LTALFEEISGSIELKPEYEELKYEMAKAEETTTG 178 (1141)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 4499999999999999999999999988888877
No 28
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.24 E-value=0.041 Score=68.92 Aligned_cols=221 Identities=19% Similarity=0.189 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHH
Q 041911 51 DLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSL 130 (624)
Q Consensus 51 ~~te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~l 130 (624)
.++.-+-++...++++++..|.. ++..+..+...+...+..+...+..+......+...+.......+.+......+
T Consensus 44 ~k~~v~~eq~~~~~ekK~~~l~q---~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~ 120 (1822)
T KOG4674|consen 44 GKTEVNHEQQLSELEKKILRLEQ---RLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSEL 120 (1822)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34444444466666666666666 333343444444555555555555555555555544544444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041911 131 SESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDY 210 (624)
Q Consensus 131 e~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel 210 (624)
..+-..+ .+.+.....++..+...+..+..++......+.+++....+. +..--+.+-....+
T Consensus 121 ~~qkr~l----------~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~-------~s~~vs~q~k~~rl 183 (1822)
T KOG4674|consen 121 QEQKRQL----------MELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQET-------QSEDVSSQLKEERL 183 (1822)
T ss_pred HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4322111 112222222333333333333333333333333333333332 22222233333333
Q ss_pred HHHHHHHHHhHHHHHHHHHhhHHhhHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 211 EEVLRDKEKSYGEVKKSLVLCETKLEREKKE----LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDS 286 (624)
Q Consensus 211 ~eele~kEe~l~~l~~~I~~~e~~ie~~~~e----l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~ 286 (624)
..+...++....-+.+.+....+.+...+.+ ...++..+.++...+..+.+....+..+++++.+.++.....+..
T Consensus 184 ~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~ 263 (1822)
T KOG4674|consen 184 EQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSK 263 (1822)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333333 555556666666666666666666666666666666666666665
Q ss_pred HHHHH
Q 041911 287 MRKQQ 291 (624)
Q Consensus 287 ~~~e~ 291 (624)
.....
T Consensus 264 ~k~t~ 268 (1822)
T KOG4674|consen 264 LKDTA 268 (1822)
T ss_pred HHhhh
Confidence 55544
No 29
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.20 E-value=0.03 Score=65.87 Aligned_cols=66 Identities=14% Similarity=0.351 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 248 SIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 248 ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
++..+..+|.....++..+..++.++..........+...+..+.....+-+..+.+++.+..+++
T Consensus 288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle 353 (775)
T PF10174_consen 288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLE 353 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444433
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.06 E-value=0.058 Score=63.96 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHH
Q 041911 189 REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIK 250 (624)
Q Consensus 189 ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~ 250 (624)
....++........++..|......+...+..+..++.+.+..+.........+..+...+.
T Consensus 1568 V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1568 VVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444443333333333333333333
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.041 Score=62.85 Aligned_cols=12 Identities=17% Similarity=0.047 Sum_probs=6.3
Q ss_pred HHHHHHHHHhhh
Q 041911 514 MKVAGEWKKKMR 525 (624)
Q Consensus 514 ~~lA~~Wk~~~~ 525 (624)
..+|..|-..+.
T Consensus 779 a~~ad~~~~~~n 790 (1118)
T KOG1029|consen 779 AVVADTKNESAN 790 (1118)
T ss_pred eeecccccchhh
Confidence 345566665543
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.99 E-value=0.054 Score=60.88 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHHHHHhhhh
Q 041911 415 REFEERVKEFE 425 (624)
Q Consensus 415 ~~~~~~~~~~~ 425 (624)
..+..+|+.++
T Consensus 441 QeL~~yi~~Le 451 (546)
T PF07888_consen 441 QELLEYIERLE 451 (546)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 33
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.92 E-value=0.013 Score=67.08 Aligned_cols=8 Identities=50% Similarity=0.833 Sum_probs=4.3
Q ss_pred ChhhHHHH
Q 041911 458 DPALLVLH 465 (624)
Q Consensus 458 dPa~lVLd 465 (624)
+|.-++||
T Consensus 496 ~~~~lilD 503 (562)
T PHA02562 496 DTNLLILD 503 (562)
T ss_pred CcCeEEEe
Confidence 55555554
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.91 E-value=0.073 Score=59.83 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=9.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHH
Q 041911 253 SVKFHSEEEKLELLHRKVRLHENEV 277 (624)
Q Consensus 253 ~~eL~~~e~eleq~~~ki~~~ekel 277 (624)
-++|+...-+..++..++......+
T Consensus 324 ~aeLh~aRLe~aql~~qLad~~l~l 348 (546)
T PF07888_consen 324 MAELHQARLEAAQLKLQLADASLEL 348 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3334444444444444343333333
No 35
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.90 E-value=0.088 Score=60.61 Aligned_cols=203 Identities=15% Similarity=0.226 Sum_probs=96.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHh----------hHHHHHHHHH
Q 041911 175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETK----------LEREKKELEL 244 (624)
Q Consensus 175 lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~----------ie~~~~el~~ 244 (624)
....+..+...|+.+-..++.-......+......+...+....+....+..++...... +.....++..
T Consensus 280 ~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~ 359 (569)
T PRK04778 280 AEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLES 359 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHH
Confidence 333444455555555555554455555555555555555555555555555555544433 3334444444
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDL----- 319 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el----- 319 (624)
+..++..+...+......+......+..+..++...+.+.......+.++.++-...+..++..+..+.+....+
T Consensus 360 Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 360 LEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444444444444444444555555555555555555555444444444444444444444444444433110000
Q ss_pred h----hHHhhhHHHHhhhhhhhHHHHHHHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 041911 320 A----SKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNL 377 (624)
Q Consensus 320 ~----sk~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~~ 377 (624)
- +--..+..+..+++...+++...---+..+++.+......++.-..+.+.......+
T Consensus 440 pgip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~ 501 (569)
T PRK04778 440 PGLPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENATL 501 (569)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011222222333334444444455666666666666666666666666555443
No 36
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.84 E-value=0.2 Score=62.76 Aligned_cols=49 Identities=18% Similarity=0.315 Sum_probs=23.9
Q ss_pred hhhhhhhhccchHhhhh-hHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHH
Q 041911 8 ISEELRVAESKKETLRR-SFDMAHSQANSVLLFTVQWKDLEEHFDLTKKS 56 (624)
Q Consensus 8 ~~~~~~~~~~k~~~~r~-~~~~liEEAAGI~~y~~rk~eA~k~L~~te~n 56 (624)
+.++|..++.+...|-+ -|..++..++-...|..+.......++....+
T Consensus 325 ~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~ 374 (1201)
T PF12128_consen 325 IKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSK 374 (1201)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555543 35555555555555555554444444433333
No 37
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.82 E-value=0.15 Score=60.63 Aligned_cols=150 Identities=13% Similarity=0.177 Sum_probs=68.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Q 041911 156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEE---REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE 232 (624)
Q Consensus 156 ~~l~~~~~~ieE~~kele~lekeleele~~Iee---ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e 232 (624)
.++..+...|.+....+.....-+......|.. +...-.......+.++...+...+.++..+.-....+..|....
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455566666666666666655555544444332 22222333333333444444444444444444444444444333
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 233 TKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 233 ~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
..+...+..+..+..+..+++.-+..+...+..++..++.++.+....-.+.....+...+...+....+..+
T Consensus 1591 -------~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~ 1663 (1758)
T KOG0994|consen 1591 -------RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGL 1663 (1758)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444555555555555544444444444444444444444444433333
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.81 E-value=0.12 Score=58.95 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=21.6
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHH
Q 041911 36 VLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQ 73 (624)
Q Consensus 36 I~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~ 73 (624)
+..|+.+...+.+.=..+-.-|.. ++.++..+|..-..
T Consensus 43 l~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~ 83 (522)
T PF05701_consen 43 LAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQA 83 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666555555555555555555 66666666665543
No 39
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.78 E-value=0.25 Score=61.88 Aligned_cols=25 Identities=8% Similarity=0.183 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 041911 202 SIQTLIEDYEEVLRDKEKSYGEVKK 226 (624)
Q Consensus 202 ~l~~eieel~eele~kEe~l~~l~~ 226 (624)
.+...+......+.....++..+..
T Consensus 508 ~a~~~l~~~~~~~~~~~~~~~~l~~ 532 (1201)
T PF12128_consen 508 QAEEELRQARRELEELRAQIAELQR 532 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334443333
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.74 E-value=0.0098 Score=60.26 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 300 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~ 300 (624)
..+...|...+..+..+..+++.++..+..++.++++++.....++...+..+.+....++.
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~ 149 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE 149 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666666666666666666666665555555555444444443
No 41
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.71 E-value=0.16 Score=57.69 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=56.3
Q ss_pred hhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHH--------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 041911 36 VLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIR--------LLDQRAKEIESKEI----KLVFVEKKIEDCNGELE 100 (624)
Q Consensus 36 I~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~--------~L~~qa~~~e~~~~----e~~~~~~~lee~~~~Le 100 (624)
+..|+.-|+++..-.-.-..||++ -..++.-+-+ +|+.....+..+.. ++-.....+..+...+.
T Consensus 171 ~~~yE~EREET~qly~~l~~niekMi~aFEeLR~qAEn~r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~ 250 (786)
T PF05483_consen 171 MKKYEYEREETRQLYMDLNENIEKMIAAFEELRVQAENDRQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLK 250 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 557888888888888888888888 2333332221 33333333333222 33344455556666666
Q ss_pred HHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 101 CKEKELGLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 101 ~~e~~l~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
.++..+..+...+.+....+..++........
T Consensus 251 eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E 282 (786)
T PF05483_consen 251 EKENKIKDLLLLLQESQDKCNQLEEKTKEQHE 282 (786)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666555444433
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.69 E-value=0.19 Score=57.95 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 87 FVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 87 ~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
.....+..+...+...+.++..+.+.+..+...-......+..+..
T Consensus 102 ~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~ 147 (569)
T PRK04778 102 KAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKD 147 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444433
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.68 E-value=0.21 Score=58.24 Aligned_cols=126 Identities=13% Similarity=0.306 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHH-----------HHHHHHHHHHHHHH
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREK-----------KELELTQSSIKELS 253 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~-----------~el~~le~ql~el~ 253 (624)
.+.+....++...-+.+-+..+-+.++.+++.+.+++.++.+.++-....++..+ ..++.+-.++++.-
T Consensus 305 emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdal 384 (1243)
T KOG0971|consen 305 EMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDAL 384 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444445555555555555555555444444333322 23333345566666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 254 VKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 254 ~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.+|.++...-.+-..+. .++++.++.++...++.-+.+..+++-.+..+..++..++
T Consensus 385 VrLRDlsA~ek~d~qK~---~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 385 VRLRDLSASEKQDHQKL---QKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHhcchHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555444443333 6666677777777777777777777777777777777765
No 44
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.16 Score=56.75 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHH
Q 041911 82 EIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEE 140 (624)
Q Consensus 82 ~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~e 140 (624)
.+.+..++.++..+.................+..+..+++..+.+++.+......+...
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~ 323 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQ 323 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666554444333
No 45
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.66 E-value=0.19 Score=57.24 Aligned_cols=140 Identities=14% Similarity=0.232 Sum_probs=62.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHH
Q 041911 172 IELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKE 251 (624)
Q Consensus 172 le~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~e 251 (624)
+.....++...+..|.....++..++....++..++.....++.............+.+....+.....++.........
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 44444444444455555555555555555555555555555555555555555555555555555555555444333333
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 252 LSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 252 l~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
.......+...++++.........+......++...+.++...--.+...+..+....++
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke 422 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKE 422 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 46
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.65 E-value=0.24 Score=58.31 Aligned_cols=93 Identities=18% Similarity=0.077 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH-------H----HHHHHHHHHHHHHHHHHHh
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS-------V----EEWINKCQAYQKELQLLKN 163 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e-------l----~e~~~eL~~~~~~l~~~~~ 163 (624)
....+......+..+...+.+++..+..+..+.+++..+.....+..-. + .-...+-......+....+
T Consensus 256 ~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ 335 (1200)
T KOG0964|consen 256 YIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKD 335 (1200)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHH
Confidence 3344444555555555566666666666666555555442111111111 1 1111111222234445566
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 041911 164 LIKECCDEIELREKKVGEVQRSIE 187 (624)
Q Consensus 164 ~ieE~~kele~lekeleele~~Ie 187 (624)
.|++...++..+......+...-.
T Consensus 336 ki~e~~~EL~~I~Pky~~l~~ee~ 359 (1200)
T KOG0964|consen 336 KIEEKKDELSKIEPKYNSLVDEEK 359 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHhHHH
Confidence 666666666666665555443333
No 47
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.63 E-value=0.025 Score=57.33 Aligned_cols=146 Identities=18% Similarity=0.343 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHH--HHHHHHHHHhhhh
Q 041911 181 EVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELT--QSSIKELSVKFHS 258 (624)
Q Consensus 181 ele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~l--e~ql~el~~eL~~ 258 (624)
++...+......+...+.++..+...+.....+++..+.++..++..|.....++.+.+..+.+. +.++..+..++..
T Consensus 21 rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ 100 (239)
T COG1579 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQI 100 (239)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33334444444455555555555555555555555555555555555555555555555444332 4555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 041911 259 EEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQL 326 (624)
Q Consensus 259 ~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk~~~~ 326 (624)
+......+...+.++..+++....++...+.......+.+...+..++.-...+......+.++..++
T Consensus 101 ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L 168 (239)
T COG1579 101 AKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555544444444444444444444
No 48
>PRK11637 AmiB activator; Provisional
Probab=97.61 E-value=0.099 Score=58.01 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=5.6
Q ss_pred hhhcCCchhHH
Q 041911 587 SITAEGRSSSS 597 (624)
Q Consensus 587 li~~g~~i~Av 597 (624)
-|..|+.|-.|
T Consensus 388 ~V~~G~~ig~~ 398 (428)
T PRK11637 388 QVRAGQPIALV 398 (428)
T ss_pred EECCCCeEEee
Confidence 45555555433
No 49
>PRK11637 AmiB activator; Provisional
Probab=97.60 E-value=0.11 Score=57.71 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911 88 VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL 134 (624)
Q Consensus 88 ~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l 134 (624)
+...+..+...+...+.++..+...|..++.+|..++.++......+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444443
No 50
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.56 E-value=0.33 Score=57.35 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=22.6
Q ss_pred HHHHHHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhhh
Q 041911 339 EFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNL 377 (624)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~~ 377 (624)
++..+.-.+.-.+.++..|.--++...++++.....+..
T Consensus 503 elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~ 541 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGN 541 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444445555666666766677777776665544443
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.55 E-value=0.53 Score=59.65 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 041911 85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNL 164 (624)
Q Consensus 85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ 164 (624)
.-.+..+...+...+...+.++.++.+.+.++...+..++.+.+....++......+ ....++......+..+...
T Consensus 288 Aag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~l----r~q~ei~~l~~~LeELee~ 363 (1486)
T PRK04863 288 ALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL----RQQEKIERYQADLEELEER 363 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 335556777788888888888888888888888888888888888888765433211 1122333333444444444
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH---HhhHHHHHH
Q 041911 165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE---TKLEREKKE 241 (624)
Q Consensus 165 ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e---~~ie~~~~e 241 (624)
+.+....+......+..+...+...+..+..++..+..+...+..++.++...+..+..+.+.-.-+. =..+.....
T Consensus 364 Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~ 443 (1486)
T PRK04863 364 LEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDW 443 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 44444455555555555555555555555555555555555555555555555555554444322221 112334445
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041911 242 LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESL 280 (624)
Q Consensus 242 l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~ 280 (624)
+..+..++.+....+..++.++..+...+..+.+.....
T Consensus 444 LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l 482 (1486)
T PRK04863 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLV 482 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666665555555555555555555554443
No 52
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.55 E-value=0.15 Score=53.15 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 221 YGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 300 (624)
Q Consensus 221 l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~ 300 (624)
+.++....+.....|....++..++-.++..+-.+......+.+.++.++-.....+.+.+.++...++++.++.+.+..
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~ 246 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKA 246 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444455556666666666666666666666666666666666666666666666666666665554
Q ss_pred HH
Q 041911 301 KK 302 (624)
Q Consensus 301 k~ 302 (624)
.+
T Consensus 247 l~ 248 (294)
T COG1340 247 LR 248 (294)
T ss_pred HH
Confidence 43
No 53
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.55 E-value=0.015 Score=54.66 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHH
Q 041911 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELE 243 (624)
Q Consensus 164 ~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~ 243 (624)
........++.++..+..++.....++.+|.+++.....+...++.+...+......+.......... +....-+.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~----E~l~rriq 83 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA----EQLNRRIQ 83 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH----HHHHhhHH
Confidence 33333344444444444444444445555555444444444444444444444443333332222211 12233344
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299 (624)
Q Consensus 244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle 299 (624)
.++.++......|......+.++..+.+|.++++...+.+....+..+.++...+.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555555555555556666666666666666666666555555555555444433
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.50 E-value=0.088 Score=61.64 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 91 KIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCD 170 (624)
Q Consensus 91 ~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~k 170 (624)
++..+..+|...++.-++++.+|..+...-..+..++.+++.+.+.++..+..+. .........+..+..++.++.+
T Consensus 426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~---~aRq~DKq~l~~LEkrL~eE~~ 502 (697)
T PF09726_consen 426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV---QARQQDKQSLQQLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444434444444444444433333333321 1222222333444455555555
Q ss_pred HHHHHHHhHHH
Q 041911 171 EIELREKKVGE 181 (624)
Q Consensus 171 ele~lekelee 181 (624)
....+++++.+
T Consensus 503 ~R~~lEkQL~e 513 (697)
T PF09726_consen 503 QRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 55
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.43 E-value=0.43 Score=55.76 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhH
Q 041911 292 KKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLK 327 (624)
Q Consensus 292 ~~l~kEle~k~~ele~~~kele~~~~el~sk~~~~~ 327 (624)
+.++..|..+.-.++.+.+.+++.+.+|+--+...+
T Consensus 447 E~MV~qLtdknlnlEekVklLeetv~dlEalee~~E 482 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNE 482 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777788888888777766665554443
No 56
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.45 Score=54.77 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=5.0
Q ss_pred hhhHhhHHH
Q 041911 37 LLFTVQWKD 45 (624)
Q Consensus 37 ~~y~~rk~e 45 (624)
..|+++|++
T Consensus 312 ~TFEDKrke 320 (1118)
T KOG1029|consen 312 VTFEDKRKE 320 (1118)
T ss_pred cchhhhhHH
Confidence 456666554
No 57
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.36 E-value=0.28 Score=51.86 Aligned_cols=40 Identities=33% Similarity=0.392 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESL 280 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~ 280 (624)
.+......+..+...+.++.+++..+......++..+...
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~l 249 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLREL 249 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHH
Confidence 3333344444444444444444444444444444444433
No 58
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.33 E-value=0.71 Score=55.85 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=3.2
Q ss_pred HHHHHhh
Q 041911 492 ILLLEQL 498 (624)
Q Consensus 492 ilLLe~l 498 (624)
++-|.++
T Consensus 1023 v~~L~ql 1029 (1317)
T KOG0612|consen 1023 VMELSQL 1029 (1317)
T ss_pred HHHHHHH
Confidence 4444444
No 59
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.27 E-value=0.21 Score=48.68 Aligned_cols=135 Identities=24% Similarity=0.279 Sum_probs=82.0
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHH
Q 041911 160 LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREK 239 (624)
Q Consensus 160 ~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~ 239 (624)
....++.+.+.-.+.......+.-..+.-++.+|.......+.....+.++..++... .+.+.+.+..-+...
T Consensus 64 ~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~-------~~nlk~l~~~ee~~~ 136 (205)
T KOG1003|consen 64 AQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRIL-------DSNLKSLSAKEEKLE 136 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhHHHHHHHHHHHHh
Confidence 3333333333333333333333334444444444444444444444444444444444 444444444444556
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 240 KELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 301 (624)
Q Consensus 240 ~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k 301 (624)
.....|..+++.+..+|...++.-+.....+..+++.+...++.+...+..+.....+|+-.
T Consensus 137 q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 137 QKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888888888888888888888888888887777777766666543
No 60
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.25 E-value=0.79 Score=54.79 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=31.2
Q ss_pred ccChHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhccchH
Q 041911 528 VENSLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAP 569 (624)
Q Consensus 528 ~~~~~ea~~fL~lla~ygl~s~fd~~el~~l~~~v~~~~~~~ 569 (624)
|+..+.|+|+|--+-+|.=++-|=-||+-.-+....--+.|.
T Consensus 1055 GEKTvAaLALLFaihsy~PaPFfvlDEiDAALDntNi~kvas 1096 (1141)
T KOG0018|consen 1055 GEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVAS 1096 (1141)
T ss_pred cHHHHHHHHHHHHhccCCCCCceehhhHHHHhhhccHHHHHH
Confidence 457899999999999999999998888765554444334443
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.57 Score=54.37 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911 200 ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC 231 (624)
Q Consensus 200 ~e~l~~eieel~eele~kEe~l~~l~~~I~~~ 231 (624)
+.....+..++..++...+++++++...++..
T Consensus 801 l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~ 832 (970)
T KOG0946|consen 801 LSEESTRLQELQSELTQLKEQIQTLLERTSAA 832 (970)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555556666666666665555554
No 62
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.23 E-value=0.93 Score=55.22 Aligned_cols=34 Identities=24% Similarity=0.205 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHhhhccchHHHHhhhCCCCCchhHHH
Q 041911 550 FDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQC 586 (624)
Q Consensus 550 fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~v~ 586 (624)
.|.+-+..++..+-..... .+.+|.+.++|.+.+
T Consensus 854 LD~e~l~~l~~~l~~i~~~---~~qiiIISH~eel~e 887 (908)
T COG0419 854 LDEERLEKLAEILEELLSD---GRQIIIISHVEELKE 887 (908)
T ss_pred CCHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHHH
Confidence 3677777666655543322 667788888888775
No 63
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.21 E-value=0.063 Score=50.52 Aligned_cols=91 Identities=22% Similarity=0.326 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 041911 207 IEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE---KLELLHRKVRLHENEVESLEQK 283 (624)
Q Consensus 207 ieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~---eleq~~~ki~~~ekel~~~~~e 283 (624)
.+.+...+..++........+|.+...++...+.++..++.++.++...+...+. ..+++..+|..++.++..-...
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~ 95 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKK 95 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333344444444444444444444433 2334555555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 041911 284 LDSMRKQQKKYFDD 297 (624)
Q Consensus 284 l~~~~~e~~~l~kE 297 (624)
|..+...++.....
T Consensus 96 L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 96 LKETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 54444444433333
No 64
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.20 E-value=0.65 Score=52.98 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 041911 46 LEEHFDLTKKSLEK 59 (624)
Q Consensus 46 A~k~L~~te~nL~r 59 (624)
+.-+++..+.....
T Consensus 220 ~~~k~~~leeey~~ 233 (786)
T PF05483_consen 220 DYEKFEDLEEEYKK 233 (786)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 65
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.18 E-value=0.64 Score=52.50 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=16.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHH
Q 041911 38 LFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 38 ~y~~rk~eA~k~L~~te~nL~r 59 (624)
+|..-...|.+-++.+.....+
T Consensus 89 ~ye~El~~ar~~l~e~~~~ra~ 110 (546)
T KOG0977|consen 89 KYEAELATARKLLDETARERAK 110 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHH
Confidence 7888888888888887666554
No 66
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.14 E-value=0.0001 Score=88.06 Aligned_cols=149 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHH
Q 041911 165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELEL 244 (624)
Q Consensus 165 ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~ 244 (624)
+.++..+++.+.+....+++.-......+.++...++.+..........+..++..+..+...+......+.........
T Consensus 133 ~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~k 212 (859)
T PF01576_consen 133 VAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAK 212 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444455555555444444444445555555555555555555555555555555
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
+...+.++...|...+..+.++.....++..++......+..-.+.-..+.+.+...+.+++.+...++
T Consensus 213 L~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqle 281 (859)
T PF01576_consen 213 LQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLE 281 (859)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 566666666666666666666666666666666666655555555555555555555555555555544
No 67
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.13 E-value=0.45 Score=49.62 Aligned_cols=83 Identities=19% Similarity=0.296 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 203 IQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ 282 (624)
Q Consensus 203 l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~ 282 (624)
+..++..+........+.+..+...+......+.....+...+.....++-.++-...+..+++..++..+.+++.....
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555554444444444444444444444444444444444444444444444444444
Q ss_pred HHH
Q 041911 283 KLD 285 (624)
Q Consensus 283 el~ 285 (624)
.+.
T Consensus 243 ~ik 245 (294)
T COG1340 243 KIK 245 (294)
T ss_pred HHH
Confidence 433
No 68
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.08 E-value=0.36 Score=47.75 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ 282 (624)
Q Consensus 244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~ 282 (624)
.+..++..-..+...+......+..+|.++...++++..
T Consensus 154 ~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKer 192 (194)
T PF15619_consen 154 SFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKER 192 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555555555555555555555555543
No 69
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.03 E-value=1.1 Score=52.53 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhhc-------------------CC--------CCCHhHHHHHHHHHHHHHHhhhhhc-------cChH-
Q 041911 488 RRSCILLLEQLSTV-------------------AP--------EINAQVRDEAMKVAGEWKKKMRVAV-------ENSL- 532 (624)
Q Consensus 488 r~~cilLLe~l~~~-------------------~p--------~~~~~v~~~A~~lA~~Wk~~~~~~~-------~~~~- 532 (624)
-.+|..||++.+.. +| .++..+.-.|+.+| |=.+.-+++ .++.
T Consensus 790 L~~ct~lm~aI~~Lv~as~~lQ~EIVasgrgsas~~eFY~kNsrWTEGLISAaKAVa--~aatvLVeaAdkvV~~~gkfE 867 (980)
T KOG0980|consen 790 LSACTALMEAIMALVKASRELQTEIVASGRGSASPNEFYKKNSRWTEGLISAAKAVA--WAATVLVEAADKVVTGTGKFE 867 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcCchhHHHHHHHHHHH--HHHHHHHHHhhhHhcCCCCcH
Confidence 34799999998741 22 35556666676555 555544332 1111
Q ss_pred -------H-HHHHHHHHHHhcCCCCCChHHHHHHHHHh
Q 041911 533 -------E-VLGFLHLLAAYRLAPAFDGEELESLLCIV 562 (624)
Q Consensus 533 -------e-a~~fL~lla~ygl~s~fd~~el~~l~~~v 562 (624)
| |-.-.||||+-.+..+|+.--+-+|=...
T Consensus 868 eLIVas~EIAAsTaQLVaASrVKA~k~S~~ld~L~~as 905 (980)
T KOG0980|consen 868 ELIVASQEIAASTAQLVAASRVKADKDSKKLDALEVAS 905 (980)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhccccchhhHHHHHHH
Confidence 1 23457999999999999888877775443
No 70
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.97 E-value=0.00018 Score=85.94 Aligned_cols=19 Identities=5% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKEI 78 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~ 78 (624)
.+.++..+++.|.+....+
T Consensus 132 ~~~eL~eqle~lqk~k~~l 150 (859)
T PF01576_consen 132 AVAELNEQLEQLQKQKAKL 150 (859)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555543333
No 71
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.96 E-value=1 Score=51.03 Aligned_cols=188 Identities=14% Similarity=0.085 Sum_probs=83.7
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 35 SVLLFTVQWKDLEEHFDLTKKSLEK------QSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGL 108 (624)
Q Consensus 35 GI~~y~~rk~eA~k~L~~te~nL~r------l~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~ 108 (624)
+|--...|=+.|+..+-.+-..|-. ++..+.+.+.+++.-..+.+++. ..+......+...+.+-..
T Consensus 74 EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk-------~~lee~~~el~~~k~qq~~ 146 (629)
T KOG0963|consen 74 EIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELK-------EELEEVNNELADLKTQQVT 146 (629)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHH-------HHHHHHHHHHhhhhhhHHH
Confidence 3344456777888888888888887 77777777777766222333332 2222333333333333223
Q ss_pred HHcHhhhHHHhHhHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHH-
Q 041911 109 VQKXIGECNCELHLKENELNSLSESL-NIKKEELSS-VEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRS- 185 (624)
Q Consensus 109 l~~~I~ele~Eie~le~el~~le~~l-~~k~~eL~e-l~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~- 185 (624)
+......+.+.-..+...+...-... ....+...+ ...+.+.......++..+...+..+...+.....++......
T Consensus 147 v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~ 226 (629)
T KOG0963|consen 147 VRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKY 226 (629)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 32222222222222222222111000 000011111 111222223333444444444444444444444444433333
Q ss_pred ---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911 186 ---IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229 (624)
Q Consensus 186 ---Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~ 229 (624)
...+..++.-...+++.++..|-.++.+++.+..++........
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 33344555555555666666666666666666665555544433
No 72
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=1.2 Score=51.78 Aligned_cols=114 Identities=13% Similarity=-0.002 Sum_probs=53.8
Q ss_pred hhhhhHHHHHHhhhhhhhhHhh-----HHHHHHHHHHHHHH----HHH---------HHHHHHHhHHHHHHH-------H
Q 041911 21 TLRRSFDMAHSQANSVLLFTVQ-----WKDLEEHFDLTKKS----LEK---------QSNYVDVKIRLLDQR-------A 75 (624)
Q Consensus 21 ~~r~~~~~liEEAAGI~~y~~r-----k~eA~k~L~~te~n----L~r---------l~~Eie~kl~~L~~q-------a 75 (624)
-.|..+-.+|..+-|=--|-.| |.++-.+....++- ... +..+++..+.++-.- .
T Consensus 566 ~~r~~~~~lItkrvGke~f~srL~~lsr~e~ysra~~kqq~~l~~~~k~~lD~~f~kL~kele~~i~k~ls~~~eee~~~ 645 (970)
T KOG0946|consen 566 VSRSDVYQLITKRVGKENFISRLQRLSRHELYSRASMKQQPQLKSNTKLALDFEFKKLFKELEGLIAKLLSSKTEEEEQT 645 (970)
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHhhHhHHHHHHhhccCccCCCCchhhhhHHHHHHHHHHHHHHHHHhcCCCccchhh
Confidence 4566777888888887666554 44444443333322 111 444544444443321 1
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911 76 KEIESK----EIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL 134 (624)
Q Consensus 76 ~~~e~~----~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l 134 (624)
..++++ ......+...+.+....++..++...++.-..++++.++...-.+.+++..+.
T Consensus 646 ~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~ 708 (970)
T KOG0946|consen 646 QLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL 708 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 11223444455555555555555555555444444444444444444444443
No 73
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=96.93 E-value=0.65 Score=48.24 Aligned_cols=130 Identities=17% Similarity=0.242 Sum_probs=76.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041911 193 LAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRL 272 (624)
Q Consensus 193 l~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~ 272 (624)
+..+....+.+..++...+....+++..+.-....++.+.-.++....++...+.|+++++.-...-+..+.....+-..
T Consensus 139 ~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes 218 (305)
T PF14915_consen 139 VSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQES 218 (305)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555554555666666666777777776666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 041911 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASK 322 (624)
Q Consensus 273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk 322 (624)
++.++-....+-...+.++....+....+++-+-.++..|...+..|.+.
T Consensus 219 ~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae 268 (305)
T PF14915_consen 219 LEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAE 268 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 66666555555555556666666666666666666666665666665544
No 74
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=96.84 E-value=1.6 Score=51.29 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=7.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q 041911 251 ELSVKFHSEEEKLELLHRKVR 271 (624)
Q Consensus 251 el~~eL~~~e~eleq~~~ki~ 271 (624)
.++.++..+..++..++..+.
T Consensus 498 ~l~~El~~l~~e~~~lq~~~~ 518 (980)
T KOG0980|consen 498 SLRQELALLLIELEELQRTLS 518 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.81 E-value=1.5 Score=50.63 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC 231 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~ 231 (624)
.......+......++..+...+.++..++..+++.+..+...+...
T Consensus 434 ~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 434 KASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333344444444445555555555555555555555555544443
No 76
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.81 E-value=1.3 Score=49.83 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 246 QSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKL 284 (624)
Q Consensus 246 e~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el 284 (624)
.+++.+...++..++..+.+..--|..+...+....-++
T Consensus 431 ~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el 469 (581)
T KOG0995|consen 431 SEELHEAENELETLQEHFSNKASTIEEKIQILGEIELEL 469 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333333333333
No 77
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=96.65 E-value=0.75 Score=44.96 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 041911 182 VQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEE 261 (624)
Q Consensus 182 le~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~ 261 (624)
.+..+...+.++...+.-.+.+....++....+...+..+.....+....+..+.....++.-+..-++.+...-..+..
T Consensus 58 dEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q 137 (205)
T KOG1003|consen 58 LEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQ 137 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhh
Confidence 33344444444444444444444455555555555555555444444444333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 262 KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRE 304 (624)
Q Consensus 262 eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~e 304 (624)
..+.+...|..+.-++++-.......++.+..|.++.+..+..
T Consensus 138 ~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~k 180 (205)
T KOG1003|consen 138 KEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEK 180 (205)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHh
Confidence 3344444444444444444444444444444444444444433
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.62 E-value=2 Score=49.59 Aligned_cols=48 Identities=4% Similarity=0.144 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 265 LLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 265 q~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
.+..+|-..-+-+.-...++.+.-.+...+.+++......++..=...
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334555555555566666666666666666666666665555444433
No 79
>PRK09039 hypothetical protein; Validated
Probab=96.62 E-value=0.59 Score=50.37 Aligned_cols=12 Identities=8% Similarity=0.199 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 041911 295 FDDVELKKRELN 306 (624)
Q Consensus 295 ~kEle~k~~ele 306 (624)
..+|...+.++-
T Consensus 189 ~~~l~~~~~~~~ 200 (343)
T PRK09039 189 VQELNRYRSEFF 200 (343)
T ss_pred HHHHHHhHHHHH
Confidence 344444444443
No 80
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.60 E-value=2.8 Score=51.00 Aligned_cols=7 Identities=43% Similarity=0.387 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 041911 52 LTKKSLE 58 (624)
Q Consensus 52 ~te~nL~ 58 (624)
.+..+|+
T Consensus 465 ~~~keL~ 471 (1317)
T KOG0612|consen 465 EMDKELE 471 (1317)
T ss_pred HHHHHHH
Confidence 3333333
No 81
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.60 E-value=1.4 Score=47.29 Aligned_cols=64 Identities=9% Similarity=0.231 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 237 REKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 300 (624)
Q Consensus 237 ~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~ 300 (624)
....++............++....+.+++....|......|...+.++...+.+..-+..+++-
T Consensus 214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~ 277 (499)
T COG4372 214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQ 277 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555556666666666666666666666666666665555444444444444333
No 82
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.53 E-value=1.5 Score=46.96 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=20.0
Q ss_pred HHHHHHHHHH---HHHHHHHhHHHHHHHHHHHH
Q 041911 50 FDLTKKSLEK---QSNYVDVKIRLLDQRAKEIE 79 (624)
Q Consensus 50 L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e 79 (624)
|--.+.|+.. -++.|.|+|..++.+...+.
T Consensus 62 lf~~~~~lr~gVfqlddi~~qlr~~rtel~~a~ 94 (499)
T COG4372 62 LFLLNRNLRSGVFQLDDIRPQLRALRTELGTAQ 94 (499)
T ss_pred HHHhhhhHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344566666 56778888888888755443
No 83
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.45 E-value=3.5 Score=50.31 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=26.5
Q ss_pred hccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911 15 AESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 15 ~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r 59 (624)
..++|.+.. .|+.+.-|+-.|+.-...+-......+..++.
T Consensus 149 l~~~~~er~----~il~~l~~l~~~e~~~~~l~e~~~~~~~~~e~ 189 (908)
T COG0419 149 LKSKPKERK----EILDELFGLEKYEKLSELLKEVIKEAKAKIEE 189 (908)
T ss_pred HhcCcHHHH----HHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555 67777778888777666666666555555555
No 84
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.45 E-value=2.5 Score=48.64 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=14.2
Q ss_pred HHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhh
Q 041911 343 KKKELSSIEKTIAECSKEVELKKNQLNLVQHESN 376 (624)
Q Consensus 343 ~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~ 376 (624)
.+.+++..+..+.+....|..-++.-......|.
T Consensus 387 ~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~ 420 (560)
T PF06160_consen 387 QLEEIEEEQEEINESLQSLRKDEKEAREKLQKLK 420 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443333333
No 85
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=96.39 E-value=2.1 Score=47.03 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 041911 84 KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS-------VEEWINKCQAYQK 156 (624)
Q Consensus 84 e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e-------l~e~~~eL~~~~~ 156 (624)
.|+.++.....+......++.+...--..+..+..+|...+.++..++..++++...+.. ++....+...+..
T Consensus 303 k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~r 382 (622)
T COG5185 303 KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTR 382 (622)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666666666677777777777777777666555555532 3333334444445
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 041911 157 ELQLLKNLIKECCDEIELRE 176 (624)
Q Consensus 157 ~l~~~~~~ieE~~kele~le 176 (624)
.++.+..++.++.+.+-...
T Consensus 383 eL~~i~~~~~~L~k~V~~~~ 402 (622)
T COG5185 383 ELDKINIQSDKLTKSVKSRK 402 (622)
T ss_pred HHHHhcchHHHHHHHHHhHH
Confidence 55555555555555544433
No 86
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.30 E-value=1.9 Score=45.58 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELN 306 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele 306 (624)
|..++.++..........+......+..+...+.+...++.+.+..+..+.+.+...+..+.
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 34455555544444444444444444444445544444444444444444444444443333
No 87
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.28 E-value=3.8 Score=48.94 Aligned_cols=42 Identities=14% Similarity=0.033 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911 92 IEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES 133 (624)
Q Consensus 92 lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~ 133 (624)
+-.+..++..++...+..+..++++..+..++..+..++...
T Consensus 303 iiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~ 344 (1195)
T KOG4643|consen 303 IIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQ 344 (1195)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334555555555555555555566666666555555555444
No 88
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=96.16 E-value=5.3 Score=49.43 Aligned_cols=18 Identities=0% Similarity=-0.193 Sum_probs=10.9
Q ss_pred CCCchhHHHhhhcCCchh
Q 041911 578 GDKVPGLQCSITAEGRSS 595 (624)
Q Consensus 578 ~~k~~~~v~li~~g~~i~ 595 (624)
..+.-+||.+|..+.|.+
T Consensus 1250 ITHDE~fv~~i~~~~~~e 1267 (1294)
T KOG0962|consen 1250 ITHDEDFVQLLGRSAYPE 1267 (1294)
T ss_pred eehHHHHHHHhhhcccch
Confidence 345556777666665554
No 89
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=1.9 Score=44.42 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=32.1
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041911 160 LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL 228 (624)
Q Consensus 160 ~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I 228 (624)
...+.+.+..+....+..+++.+...+++....+.+.+.++...+..+..++.+|....++|..+..-+
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444444444444433
No 90
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.15 E-value=2.2 Score=49.15 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=48.5
Q ss_pred cchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH
Q 041911 17 SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESK 81 (624)
Q Consensus 17 ~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~ 81 (624)
.+|...| .|+++.||+..+..+...+..++......+.+ -..++..+++.|+-|..+++..
T Consensus 141 ~~~~~~~----~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~ 204 (563)
T TIGR00634 141 FRPDEQR----QLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA 204 (563)
T ss_pred cCHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 5677777 89999999988888888888888888888887 3456777777777777766654
No 91
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.14 E-value=1.6 Score=43.24 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911 234 KLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE 274 (624)
Q Consensus 234 ~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~e 274 (624)
.+..+...+..+.++..+++.++...+.++..+...+.|+.
T Consensus 69 Evr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~ 109 (194)
T PF15619_consen 69 EVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLK 109 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444445555555555544444444433
No 92
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=3.1 Score=46.52 Aligned_cols=71 Identities=20% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLD-------SMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~-------~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
+.+-=+++.++..++.. .-+++.+.-.|..++.+++=....+. -+++++++-+.-+..-+.+-.++.++
T Consensus 176 EEENIsLQKqVs~LR~s----QVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE 251 (772)
T KOG0999|consen 176 EEENISLQKQVSNLRQS----QVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE 251 (772)
T ss_pred HHhcchHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444556666555444 66666666666666666555544443 23455555555555555666667777
Q ss_pred HH
Q 041911 312 IE 313 (624)
Q Consensus 312 le 313 (624)
++
T Consensus 252 L~ 253 (772)
T KOG0999|consen 252 LS 253 (772)
T ss_pred HH
Confidence 75
No 93
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.05 E-value=1.3 Score=41.47 Aligned_cols=58 Identities=16% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV 298 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEl 298 (624)
++..+..++..+..++..++.++..+...-..+.+.+.....++...+.-+..+.+-+
T Consensus 53 eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 53 EIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444444444444444455555555554444555554444444443333333333333
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=95.95 E-value=5.2 Score=47.52 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 301 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k 301 (624)
..++.+-......+...+..++++..++..+|..++.++...+.--.........+.-++...
T Consensus 651 E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 651 ETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 344444455555555666666666666666666666666555444333333344444444443
No 95
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=95.77 E-value=2.4 Score=42.33 Aligned_cols=26 Identities=35% Similarity=0.653 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041911 199 NISSIQTLIEDYEEVLRDKEKSYGEV 224 (624)
Q Consensus 199 e~e~l~~eieel~eele~kEe~l~~l 224 (624)
.-+.+...+.+....+...+.+++++
T Consensus 112 NEE~Lkk~~~ey~~~l~~~eqry~aL 137 (207)
T PF05010_consen 112 NEETLKKCIEEYEERLKKEEQRYQAL 137 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444333333333
No 96
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.67 E-value=6 Score=46.15 Aligned_cols=23 Identities=22% Similarity=0.099 Sum_probs=8.2
Q ss_pred HHHHHHHHHcHhhhHHHhHhHHH
Q 041911 102 KEKELGLVQKXIGECNCELHLKE 124 (624)
Q Consensus 102 ~e~~l~~l~~~I~ele~Eie~le 124 (624)
.+.+.+.+++-|..++..+.+.+
T Consensus 118 lE~ekq~lQ~ti~~~q~d~ke~e 140 (1265)
T KOG0976|consen 118 LEMEKQKLQDTIQGAQDDKKENE 140 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 97
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.50 E-value=6 Score=44.96 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=19.7
Q ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041911 37 LLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIE 79 (624)
Q Consensus 37 ~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e 79 (624)
+-+..-|..=-+.|...+..|...+ .++..|+.|...++
T Consensus 31 s~ir~sR~rEK~El~~LNDRLA~YI----ekVR~LEaqN~~L~ 69 (546)
T KOG0977|consen 31 SPIRDSREREKKELQELNDRLAVYI----EKVRFLEAQNRKLE 69 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3344444444445555555555422 35677777655543
No 98
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.43 E-value=6.4 Score=44.89 Aligned_cols=95 Identities=22% Similarity=0.335 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhHhHHHHHHhhHHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh-----------hhhhhhhh----hhhh
Q 041911 338 KEFQWKKKELSSIEKTIAECSKEVELKKNQLNLVQHESNLVQTRTIGYLKEFK-----------EKEKHFDS----LKKG 402 (624)
Q Consensus 338 k~~~~~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~~~~~~~~~~~~~~k~~~-----------~k~~~~~~----~~~~ 402 (624)
+..+.++-++...+++++.-..++|-.+++|+++ .+.+--.+++- .+|.++ .-.+-|+| +++.
T Consensus 310 ~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELs-iLk~ief~~se~a~~~~~~~~~leslLl~knr~ 387 (629)
T KOG0963|consen 310 EEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELS-ILKAIEFGDSEEANDEDETAKTLESLLLEKNRK 387 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHH-HHHHhhcCCcccccccccccchHHHHHHHHHhh
Confidence 3445666666667777777777777777777665 23221111110 111110 00022333 6677
Q ss_pred HHHHhhHHHHhHHHHHHHHhhhhhhHHHHHHH
Q 041911 403 LEDRSQDLEVKEREFEERVKEFELREKEFDSI 434 (624)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 434 (624)
|....-.|.+.+-.|.+++-+...+-.++...
T Consensus 388 lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~ 419 (629)
T KOG0963|consen 388 LQNENASLRVANSGLSGRITELSKKGEELEAK 419 (629)
T ss_pred hhHHHHHHhccccccchhHHHHHhhhhhhHHH
Confidence 77777777777777877777776666666543
No 99
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.41 E-value=7.5 Score=45.60 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=6.4
Q ss_pred hhhHHHHHhcCcC
Q 041911 459 PALLVLHAMSGFY 471 (624)
Q Consensus 459 Pa~lVLd~i~~f~ 471 (624)
|.-+|+|.--|++
T Consensus 575 ~~p~iiD~p~~~l 587 (650)
T TIGR03185 575 RLPVIIDTPLGRL 587 (650)
T ss_pred CCCEEEcCCcccc
Confidence 4445555554444
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.37 E-value=5.5 Score=43.76 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHH
Q 041911 84 KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENEL 127 (624)
Q Consensus 84 e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el 127 (624)
.+......+..+...+......+..+...|..++..+..++.+-
T Consensus 67 ~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 67 QLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444
No 101
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.35 E-value=5.6 Score=43.72 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=17.9
Q ss_pred HHHHHhhhh-hccChH-----HHHHHHHHHHHhcCCCCCChHH
Q 041911 518 GEWKKKMRV-AVENSL-----EVLGFLHLLAAYRLAPAFDGEE 554 (624)
Q Consensus 518 ~~Wk~~~~~-~~~~~~-----ea~~fL~lla~ygl~s~fd~~e 554 (624)
..||.++.. +.|+.+ ...-|---+-+||++--.|..+
T Consensus 319 ~~wkG~vi~a~~Ga~V~A~AdG~VvyA~~l~GYG~vvIldhG~ 361 (420)
T COG4942 319 LRWKGMVIGASAGATVKAIADGRVVYADWLRGYGLVVILDHGG 361 (420)
T ss_pred ccccceEEecCCCCeeeeecCceEEechhhccCceEEEEEcCC
Confidence 457777643 223322 2223444455677665554443
No 102
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=8.8 Score=44.83 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE 232 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e 232 (624)
++.+.+...=.+-.+...+...+..+..+...++..+.++...+....
T Consensus 476 el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~ 523 (698)
T KOG0978|consen 476 ELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLE 523 (698)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555555555554444443
No 103
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.11 E-value=5.3 Score=42.12 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=12.2
Q ss_pred HcHhhhHHHhHhHHHHHHHHHHHHHH
Q 041911 110 QKXIGECNCELHLKENELNSLSESLN 135 (624)
Q Consensus 110 ~~~I~ele~Eie~le~el~~le~~l~ 135 (624)
......+...+......+.+++..+.
T Consensus 96 ~~~~~~le~~L~~~~e~v~qLrHeL~ 121 (306)
T PF04849_consen 96 SERNEALEEQLGAALEQVEQLRHELS 121 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555555555543
No 104
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.08 E-value=11 Score=45.44 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911 90 KKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES 133 (624)
Q Consensus 90 ~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~ 133 (624)
..+..+..+...++...+.-..-+..+..++..++.+++.+...
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555555555555444
No 105
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=95.06 E-value=5.7 Score=42.22 Aligned_cols=32 Identities=16% Similarity=0.387 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKV 270 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki 270 (624)
...+..|.+...++..-|.....-+.....++
T Consensus 215 r~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Em 246 (309)
T PF09728_consen 215 REQLNLYSEKFEEFQDTLNKSNEVFETFKKEM 246 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444444444444444444443333333
No 106
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=94.99 E-value=9 Score=44.16 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
+...+......+..+.........++..+..+++.++.
T Consensus 166 ~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~ 203 (563)
T TIGR00634 166 LYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEE 203 (563)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444444444
No 107
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.83 E-value=0.019 Score=67.89 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=23.4
Q ss_pred CCCCCchhHHH-hhhcCCchhHHHHHHHhcCC
Q 041911 576 GFGDKVPGLQC-SITAEGRSSSSMLVGTSAPT 606 (624)
Q Consensus 576 gl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~ 606 (624)
+|+..+++.|+ -|...+.|+|.=-+.+..|.
T Consensus 687 ~~~~~~~~~i~~~v~~~~siP~FLaalTlel~ 718 (722)
T PF05557_consen 687 EFSPELEDLIEFWVEERNSIPAFLAALTLELF 718 (722)
T ss_dssp CCHHCTHHHHHHHTTTS--HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 57788999999 99999999997777666554
No 108
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.79 E-value=17 Score=46.38 Aligned_cols=93 Identities=12% Similarity=0.171 Sum_probs=42.3
Q ss_pred HhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 40 TVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESK------EIKLVFVEKKIEDCNGELECKEKELGLVQ 110 (624)
Q Consensus 40 ~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~------~~e~~~~~~~lee~~~~Le~~e~~l~~l~ 110 (624)
..|..-=.++|...+..|.+ -+.+++.++..|..+...+... ...+.-....+......+......+....
T Consensus 734 ~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~ 813 (1353)
T TIGR02680 734 AARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAA 813 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443334445544444444 4444444444444433333211 11333344444455555555555555555
Q ss_pred cHhhhHHHhHhHHHHHHHHHHH
Q 041911 111 KXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 111 ~~I~ele~Eie~le~el~~le~ 132 (624)
..+......+.....++...-.
T Consensus 814 ~~l~~a~~~~~~a~~~l~~aaa 835 (1353)
T TIGR02680 814 RKAAAAAAAWKQARRELERDAA 835 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555444444
No 109
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.53 E-value=5.7 Score=39.71 Aligned_cols=39 Identities=28% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVES 279 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~ 279 (624)
++..++..++-...++.+++..+++...+...+.+=+..
T Consensus 162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDe 200 (207)
T PF05010_consen 162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDE 200 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555444443333
No 110
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.50 E-value=8.9 Score=41.84 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041911 284 LDSMRKQQKKYFDDVELKKREL 305 (624)
Q Consensus 284 l~~~~~e~~~l~kEle~k~~el 305 (624)
+.....++......+...+..+
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 111
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.49 E-value=12 Score=43.44 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=16.1
Q ss_pred hHHHHhhHHHHhHHHHHHHHhhhhhhHHHHHH
Q 041911 402 GLEDRSQDLEVKEREFEERVKEFELREKEFDS 433 (624)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 433 (624)
.|+++..++=...-.+.++|-.+|..--|+-+
T Consensus 418 kLq~~f~~~~~e~adl~e~~e~le~~~~ql~~ 449 (617)
T PF15070_consen 418 KLQSRFMDLMEEKADLKERVEKLEHRFIQLSG 449 (617)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence 34445554444444555555555555555543
No 112
>PRK10869 recombination and repair protein; Provisional
Probab=94.45 E-value=12 Score=43.09 Aligned_cols=61 Identities=15% Similarity=0.113 Sum_probs=47.7
Q ss_pred cchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHH
Q 041911 17 SKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEIESK 81 (624)
Q Consensus 17 ~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~e~~ 81 (624)
.+|...+ .|+++.||+..+......+-..+..+...+.+ -..+...+++-|+-|..+++..
T Consensus 137 l~~~~~~----~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~ 200 (553)
T PRK10869 137 LKPEHQK----TLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEF 200 (553)
T ss_pred cCHHHHH----HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Confidence 5677777 89999999988888888888888888888887 3456666777777776666654
No 113
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.28 E-value=0.012 Score=69.36 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHH
Q 041911 35 SVLLFTVQWKDLEEHFDLTKKSLEK------QSNYVDVKIRLLDQRAKEIESKEI 83 (624)
Q Consensus 35 GI~~y~~rk~eA~k~L~~te~nL~r------l~~Eie~kl~~L~~qa~~~e~~~~ 83 (624)
...-|+.+-....+.+.+.+...+. -...+.-.++-|+..|.++.++..
T Consensus 261 ~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~ 315 (713)
T PF05622_consen 261 QRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLEN 315 (713)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445665555555555555555544 334444555556665555555433
No 114
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.27 E-value=22 Score=45.43 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=11.0
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKEI 78 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~ 78 (624)
.+.||+..+..|..+...+
T Consensus 743 ri~el~~~IaeL~~~i~~l 761 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAEL 761 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666654433
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.24 E-value=9.2 Score=40.92 Aligned_cols=25 Identities=24% Similarity=0.651 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 274 ENEVESLEQKLDSMRKQQKKYFDDV 298 (624)
Q Consensus 274 ekel~~~~~el~~~~~e~~~l~kEl 298 (624)
+.++......+.....+...+..++
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 116
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=94.23 E-value=8.2 Score=40.35 Aligned_cols=69 Identities=14% Similarity=0.272 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 154 YQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 154 ~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~ 222 (624)
+...-..+..++.....+..+++.++-.....+.++.-.++..+.++...+-++.++..-...-+..+.
T Consensus 142 lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~ 210 (305)
T PF14915_consen 142 LKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN 210 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 333334455555555555555555555566666666666666666666666666555554444443333
No 117
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.11 E-value=0.35 Score=57.36 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 041911 154 YQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223 (624)
Q Consensus 154 ~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~ 223 (624)
+..+++.+...+..+...+..+..++..+...+......+.........++.+..-...+++.+...+.+
T Consensus 355 L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s 424 (722)
T PF05557_consen 355 LTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKS 424 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444444444444444444444433333333333333333333333333333333333
No 118
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.85 E-value=16 Score=42.20 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=15.9
Q ss_pred hhhhhhhhHHHHhhHHHHhHHHHHHHHhhh
Q 041911 395 HFDSLKKGLEDRSQDLEVKEREFEERVKEF 424 (624)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (624)
.++.....|...+..+...|+.-...+..|
T Consensus 390 ~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~ 419 (560)
T PF06160_consen 390 EIEEEQEEINESLQSLRKDEKEAREKLQKL 419 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666665554444444
No 119
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.74 E-value=10 Score=42.77 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=8.1
Q ss_pred CHhHHHHHHHHHHHHHH
Q 041911 506 NAQVRDEAMKVAGEWKK 522 (624)
Q Consensus 506 ~~~v~~~A~~lA~~Wk~ 522 (624)
++..+..++.--..|=-
T Consensus 465 ~~~~~~~~~~~~~~~~~ 481 (498)
T TIGR03007 465 TPEERRRRRRRLAAFLA 481 (498)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 44555455544444433
No 120
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.70 E-value=18 Score=42.44 Aligned_cols=73 Identities=12% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKEIE----SKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~e----~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
.+.+++.++..++.|...+. +++-+...++..+..+..++...+.++......+..+..+++....++..+-.
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~ 169 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGE 169 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44555555555555533331 11223333444444444444444444444444444444444444444433333
No 121
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.63 E-value=8.4 Score=38.36 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 178 KVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 178 eleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
.+..++..+...+..+..+..+++.+...+..+..+...+.........++..
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555556666666666666666666666655555555544444444
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.49 E-value=0.93 Score=44.79 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=36.8
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 230 LCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDV 298 (624)
Q Consensus 230 ~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEl 298 (624)
.....|.....+...+..++.++...+..+.+-.+.+..++..+.-++...+.++...+.++..|+.-+
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444555555555555555555555555555555555555555566666666666666554
No 123
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.38 E-value=4.9 Score=36.68 Aligned_cols=49 Identities=12% Similarity=0.257 Sum_probs=24.8
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911 160 LLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIE 208 (624)
Q Consensus 160 ~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eie 208 (624)
.....++.+..++..+..+...+-.-+.++...++.++.++..++.-+.
T Consensus 65 ~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 65 ALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444555565566666655555554433
No 124
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.19 E-value=12 Score=38.78 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911 153 AYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229 (624)
Q Consensus 153 ~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~ 229 (624)
.....+............+++.+..++.++...+.+..+.++..+.++..++.+|+.+...|....+-+......+.
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq 111 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ 111 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555566666666666666666666666666666666666555555555444433
No 125
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.13 E-value=5.7 Score=36.27 Aligned_cols=55 Identities=15% Similarity=0.301 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 243 ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDD 297 (624)
Q Consensus 243 ~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kE 297 (624)
.....++..+..++..++..++.+..=++.+..++++++.++...+.-+...+.+
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~~ 118 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQIDQ 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666667777777777777777777888888877777777666655543
No 126
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.03 E-value=26 Score=42.31 Aligned_cols=71 Identities=23% Similarity=0.297 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 243 ELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 243 ~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.....+++.....+....+.......++...+.++......+.++++....+++.++..++.+...|.++.
T Consensus 286 ~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 286 KETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33344555555555566666666666667777777777777777777777777777777777777777775
No 127
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=93.00 E-value=14 Score=39.22 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
+..+..+++..|..-...+++-+.-+.-...-+.....++...-+.+..+.+|-...+...+....-|
T Consensus 207 ~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l 274 (309)
T PF09728_consen 207 LKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKAL 274 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444433
No 128
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.94 E-value=0.15 Score=49.17 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCCCChHHHHHHHHHhhh-c----cchHHHHhhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCCCC
Q 041911 535 LGFLHLLAAYRLAPAFDGEELESLLCIVAQ-H----RQAPKFCQTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQ 608 (624)
Q Consensus 535 ~~fL~lla~ygl~s~fd~~el~~l~~~v~~-~----~~~~~L~~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~ 608 (624)
.+.|+.+..|++.+ |...+..++.+.+. + .-+-..++.||..+ ..+|+ |+.+|++++|++||..++-++.
T Consensus 45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 46777888888876 45666666655543 2 22445555555443 24667 9999999999999999999999
Q ss_pred CCCcccchhhhh
Q 041911 609 PVPGPMNLPQYT 620 (624)
Q Consensus 609 f~p~~llk~y~~ 620 (624)
+||..+|.+=..
T Consensus 121 ~~~~~fLeAA~~ 132 (167)
T PF07035_consen 121 VPARKFLEAAAN 132 (167)
T ss_pred CCHHHHHHHHHH
Confidence 999887765433
No 129
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.90 E-value=14 Score=38.96 Aligned_cols=13 Identities=8% Similarity=0.138 Sum_probs=7.6
Q ss_pred cchHhhhhhHHHH
Q 041911 17 SKKETLRRSFDMA 29 (624)
Q Consensus 17 ~k~~~~r~~~~~l 29 (624)
+-|....-+|+++
T Consensus 35 ls~~~~~~~l~y~ 47 (306)
T PF04849_consen 35 LSPEQIEETLRYF 47 (306)
T ss_pred CCHHHHHHHHHHH
Confidence 4555555566666
No 130
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.64 E-value=1.7 Score=42.84 Aligned_cols=71 Identities=21% Similarity=0.268 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 220 SYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ 290 (624)
Q Consensus 220 ~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e 290 (624)
.+..+...+.....++.....++..+..-+..+..++.++.-++..+..++..++.+-..+-.++.....+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444555555555555555555555555666666665555544433
No 131
>PRK10869 recombination and repair protein; Provisional
Probab=92.50 E-value=24 Score=40.61 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 97 GELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 97 ~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
..+.....++..+.....+...++.-++-+++.++.
T Consensus 164 ~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 164 QLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444445555555444
No 132
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=92.45 E-value=5.1 Score=41.21 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=19.8
Q ss_pred cCCCCCHhHHHHHHHHHHHHHHhhh
Q 041911 501 VAPEINAQVRDEAMKVAGEWKKKMR 525 (624)
Q Consensus 501 ~~p~~~~~v~~~A~~lA~~Wk~~~~ 525 (624)
.+|..+++..+..+..-.+.+++|.
T Consensus 271 ~~~s~~s~l~dQLK~qNQEL~ski~ 295 (307)
T PF10481_consen 271 FSNSSSSQLLDQLKAQNQELRSKIN 295 (307)
T ss_pred CCCCCchHHHHHHHHHhHHHHHHHH
Confidence 3667788888888888888888874
No 133
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.29 E-value=7.8 Score=42.06 Aligned_cols=27 Identities=4% Similarity=0.233 Sum_probs=16.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911 248 SIKELSVKFHSEEEKLELLHRKVRLHE 274 (624)
Q Consensus 248 ql~el~~eL~~~e~eleq~~~ki~~~e 274 (624)
-+-.++.-+..+.+++.++..+|+-++
T Consensus 329 Plv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 334455556666777777777776544
No 134
>PRK11281 hypothetical protein; Provisional
Probab=92.28 E-value=38 Score=42.28 Aligned_cols=27 Identities=22% Similarity=0.216 Sum_probs=12.7
Q ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHH
Q 041911 33 ANSVLLFTVQWKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 33 AAGI~~y~~rk~eA~k~L~~te~nL~r 59 (624)
+++...-+...+.+...+..|-..++.
T Consensus 48 ~~~~~~~~~~~k~~~~~l~~tL~~L~q 74 (1113)
T PRK11281 48 LNKQKLLEAEDKLVQQDLEQTLALLDK 74 (1113)
T ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHH
Confidence 444333333344455555555555554
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.24 E-value=24 Score=39.86 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 252 LSVKFHSEEEKLELLHRKVRLHENEVESLEQKLD---SMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 252 l~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~---~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
+...+...+.++..+..++..+..++...+.++. ..+.++..+..+++..+..++.....+
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ 378 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRR 378 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555544444444433 445566666666666666666555554
No 136
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.95 E-value=21 Score=42.57 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 261 EKLELLHRKVRLHENEVESLEQKLD---SMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 261 ~eleq~~~ki~~~ekel~~~~~el~---~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.++.........++.++...+.++. ..+.++..+..+.+..+.-++.+....+
T Consensus 345 ~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~ 400 (754)
T TIGR01005 345 MQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYR 400 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444433333332 3345555666666666666665555443
No 137
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.84 E-value=31 Score=40.29 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=8.4
Q ss_pred HHHHHHHhHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQR 74 (624)
Q Consensus 60 l~~Eie~kl~~L~~q 74 (624)
-+.+++.+|..|+.+
T Consensus 51 ~V~eLE~sL~eLk~q 65 (617)
T PF15070_consen 51 RVQELERSLSELKNQ 65 (617)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555555555555
No 138
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.70 E-value=21 Score=38.16 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=10.1
Q ss_pred HHHcHhhhHHHhHhHHHHHHHHHHHH
Q 041911 108 LVQKXIGECNCELHLKENELNSLSES 133 (624)
Q Consensus 108 ~l~~~I~ele~Eie~le~el~~le~~ 133 (624)
-+......+...+..+..+...+...
T Consensus 146 ll~gl~~~L~~~~~~L~~D~~~L~~~ 171 (325)
T PF08317_consen 146 LLEGLKEGLEENLELLQEDYAKLDKQ 171 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444443333
No 139
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.25 E-value=26 Score=38.24 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 285 DSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 285 ~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.....+......++...+.++...+..+.
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777777777777665
No 140
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=90.97 E-value=38 Score=39.76 Aligned_cols=131 Identities=9% Similarity=0.112 Sum_probs=55.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHH
Q 041911 170 DEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSI 249 (624)
Q Consensus 170 kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql 249 (624)
.+++.+...++.++.++..+-.++.......-.+-............+.+....+...+.............++.+++++
T Consensus 454 ~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~ 533 (698)
T KOG0978|consen 454 SEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQE 533 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333333333333444444444444444444444333333444444444444
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 250 KELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 300 (624)
Q Consensus 250 ~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~ 300 (624)
.-+......+..++......+....+........+...+-++......++-
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~ 584 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQ 584 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333333333333333333333
No 141
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.82 E-value=11 Score=38.86 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 279 SLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 279 ~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
..+..+.+.+++++.+..++...+.+++.-+..
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333344444444444444444443333
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.56 E-value=41 Score=40.13 Aligned_cols=29 Identities=10% Similarity=0.300 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 272 LHENEVESLEQKLDSMRKQQKKYFDDVEL 300 (624)
Q Consensus 272 ~~ekel~~~~~el~~~~~e~~~l~kEle~ 300 (624)
..+.++.+++.+.+..+.-+..++..++.
T Consensus 373 ~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e 401 (754)
T TIGR01005 373 EQQVDLDALQRDAAAKRQLYESYLTNYRQ 401 (754)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666665555544
No 143
>PRK12704 phosphodiesterase; Provisional
Probab=90.46 E-value=19 Score=41.24 Aligned_cols=8 Identities=50% Similarity=0.584 Sum_probs=3.6
Q ss_pred HHHHHHhh
Q 041911 491 CILLLEQL 498 (624)
Q Consensus 491 cilLLe~l 498 (624)
-..-|+.|
T Consensus 266 a~~~l~~l 273 (520)
T PRK12704 266 ARLALEKL 273 (520)
T ss_pred HHHHHHHH
Confidence 33444444
No 144
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.12 E-value=33 Score=40.81 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 041911 246 QSSIKELSVKFHSEEEKLELLHRKVRLHENE 276 (624)
Q Consensus 246 e~ql~el~~eL~~~e~eleq~~~ki~~~eke 276 (624)
..|...++.-|.....+++++.++|+++.+.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666666666655544
No 145
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.09 E-value=22 Score=35.47 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNIS 201 (624)
Q Consensus 156 ~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e 201 (624)
..+......+....+++..+.-+.+.+...+...+.+.+.+...+.
T Consensus 86 ~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 86 QSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444443
No 146
>PRK00106 hypothetical protein; Provisional
Probab=89.60 E-value=14 Score=42.20 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhh
Q 041911 489 RSCILLLEQLST 500 (624)
Q Consensus 489 ~~cilLLe~l~~ 500 (624)
..--.-|+.|..
T Consensus 279 eiAr~~le~Li~ 290 (535)
T PRK00106 279 EIARMTLESLIK 290 (535)
T ss_pred HHHHHHHHHHHH
Confidence 335555666653
No 147
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.00 E-value=58 Score=38.95 Aligned_cols=167 Identities=23% Similarity=0.263 Sum_probs=87.3
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHH
Q 041911 162 KNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKE 241 (624)
Q Consensus 162 ~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~e 241 (624)
.....+...+++.+......++..+.....++...+..+......+..++.++....+.-....+++......+......
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~ 667 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETR 667 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444455555555555555555555566666666666666666666666666666666666655554444444444
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHh
Q 041911 242 LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKY---FDDVELKKR-ELNEIRKYIEELSQ 317 (624)
Q Consensus 242 l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l---~kEle~k~~-ele~~~kele~~~~ 317 (624)
+...+..+..+..++..++.+++.-..--.....++...+.++.+........ ..++..++. ++-..-..|.++.+
T Consensus 668 ~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLAECQe 747 (769)
T PF05911_consen 668 LKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLAECQE 747 (769)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555544444444455555555555554432111 222233322 44444455556666
Q ss_pred hhhhHHhhhHH
Q 041911 318 DLASKDKQLKF 328 (624)
Q Consensus 318 el~sk~~~~~~ 328 (624)
=+.+--||+++
T Consensus 748 TI~sLGkQLks 758 (769)
T PF05911_consen 748 TIASLGKQLKS 758 (769)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
No 148
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.80 E-value=32 Score=35.65 Aligned_cols=9 Identities=0% Similarity=-0.027 Sum_probs=4.4
Q ss_pred hHHHHhhhC
Q 041911 448 QFFDTVKRA 456 (624)
Q Consensus 448 e~~~Al~~a 456 (624)
++.+||...
T Consensus 196 ~isaALgyv 204 (302)
T PF10186_consen 196 EISAALGYV 204 (302)
T ss_pred HHHHHHHHH
Confidence 444555544
No 149
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.70 E-value=43 Score=37.06 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=10.9
Q ss_pred HHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 107 GLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 107 ~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
.-+..++..++.++...+..+...+.
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr~ 199 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQQ 199 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 150
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.18 E-value=27 Score=39.86 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=4.7
Q ss_pred HHHHHHhhh
Q 041911 491 CILLLEQLS 499 (624)
Q Consensus 491 cilLLe~l~ 499 (624)
--+-|+.|.
T Consensus 260 a~~~l~~li 268 (514)
T TIGR03319 260 ARMALEKLI 268 (514)
T ss_pred HHHHHHHHH
Confidence 445555554
No 151
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=87.09 E-value=46 Score=35.54 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 263 LELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299 (624)
Q Consensus 263 leq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle 299 (624)
++.+.++-..+..++...+.+...++..+..+-.=++
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555544444444
No 152
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.09 E-value=34 Score=34.05 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=43.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911 156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC 231 (624)
Q Consensus 156 ~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~ 231 (624)
.++.++..++.+...++.....+|-.+...+.+....+.........+.........+++..+.+++....++...
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lL 85 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELL 85 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHh
Confidence 3455666666666666666666666666666665555555555555555555555555555555555444444443
No 153
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.00 E-value=42 Score=36.52 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=13.1
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041911 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREK 191 (624)
Q Consensus 159 ~~~~~~ieE~~kele~lekeleele~~Ieeke~ 191 (624)
..+.+.+++....++.+..++...-..|...++
T Consensus 230 ~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 230 KSIESALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444433333333333
No 154
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.84 E-value=70 Score=37.37 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=23.9
Q ss_pred hHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHhhH
Q 041911 408 QDLEVKEREFEERVKEFELREKEFDSIRKAVEDHSK 443 (624)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~ 443 (624)
+++++.++.+...--=|..+-.+|...|.++--|.-
T Consensus 607 ~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gyki 642 (716)
T KOG4593|consen 607 KEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKI 642 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 456666666655444478888888888888655543
No 155
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.79 E-value=28 Score=32.73 Aligned_cols=66 Identities=21% Similarity=0.431 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 041911 246 QSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQ----KKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 246 e~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~----~~l~kEle~k~~ele~~~ke 311 (624)
..++.++..++..+.....++...+.++...++....++.+.+..+ ..+..|+..++.+++.++..
T Consensus 79 ~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 79 KEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444443333222 34445555555555555443
No 156
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=85.99 E-value=52 Score=35.12 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 261 EKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 261 ~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.+.+.+...++-+..++...+.++.+.-.+-+++..|.+..+..+..++.++.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667777888888888888888889999999999999998888876
No 157
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.39 E-value=66 Score=35.77 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 284 LDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 284 l~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
|..++++-+.+..++=+.+.+|+..+++
T Consensus 480 LdlLkrEKe~~EqefLslqeEfQk~eke 507 (527)
T PF15066_consen 480 LDLLKREKETREQEFLSLQEEFQKHEKE 507 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444
No 158
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.28 E-value=15 Score=39.23 Aligned_cols=10 Identities=30% Similarity=0.428 Sum_probs=6.3
Q ss_pred HHHHHHHHhh
Q 041911 489 RSCILLLEQL 498 (624)
Q Consensus 489 ~~cilLLe~l 498 (624)
.||-++|-.|
T Consensus 292 ~AlK~lLtnl 301 (314)
T PF04111_consen 292 KALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4577776655
No 159
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.23 E-value=49 Score=38.03 Aligned_cols=35 Identities=20% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNE 307 (624)
Q Consensus 273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~ 307 (624)
...+--.++..+++.+.++..+...+..|..+...
T Consensus 222 ~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 222 VVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR 256 (861)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence 33333344444444444444444444444443333
No 160
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=85.10 E-value=14 Score=42.28 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911 85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL 134 (624)
Q Consensus 85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l 134 (624)
...+...+..+...++.++.+...++..+.+++.+++.++.++..+...+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666665554
No 161
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=84.73 E-value=62 Score=34.88 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041911 43 WKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIE 79 (624)
Q Consensus 43 k~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e 79 (624)
-...+.+|..|...+..+-.++..+-..|.....+++
T Consensus 3 l~~GL~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e 39 (344)
T PF12777_consen 3 LENGLDKLKETEEQVEEMQEELEEKQPELEEKQKEAE 39 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666644444333333333333333
No 162
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=84.33 E-value=19 Score=41.23 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 101 CKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSV 144 (624)
Q Consensus 101 ~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el 144 (624)
.....+..+...+..++.+++.++..+..++..+..+..+|..+
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444443333334333
No 163
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.97 E-value=76 Score=35.76 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhHhhHHhHHHHhhhCCChhhHH
Q 041911 414 EREFEERVKEFELREKEFDSIRKAVEDHSKNLLLQFFDTVKRARDPALLV 463 (624)
Q Consensus 414 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~l~~e~~~Al~~a~dPa~lV 463 (624)
.++..+-|..+.-...|...+|..++-.-.+-++..+.+.+..+--++|+
T Consensus 356 q~~I~e~ve~i~~ts~q~a~l~~~l~i~~~ny~~~~~tv~~~~v~tp~lq 405 (596)
T KOG4360|consen 356 QKRIFETVEQINETSQQMAELPEVLVIPGSNYSSQQQTVARLQVQTPKLQ 405 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhccchhHH
Confidence 34455556667777888888888865555555555555555444444433
No 164
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=83.93 E-value=1.3e+02 Score=37.92 Aligned_cols=48 Identities=13% Similarity=0.213 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q 041911 207 IEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSV 254 (624)
Q Consensus 207 ieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~ 254 (624)
+......+....+.+.++++++......+.....++........++..
T Consensus 402 ~~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (1294)
T KOG0962|consen 402 FGGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKK 449 (1294)
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555666666555555454444444444333333333
No 165
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=83.83 E-value=84 Score=35.68 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=22.1
Q ss_pred HhhhhhHHhhhHHHHhhhhhhhHHHHHHHHHhhHhHHHHHHhhHHHH
Q 041911 316 SQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAECSKEVE 362 (624)
Q Consensus 316 ~~el~sk~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~e 362 (624)
.++|+|-++.+..+-..++....-+...+..++++.+.+..+.++-+
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~ 399 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQE 399 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34444444455444444444444444455555555555544444333
No 166
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.71 E-value=76 Score=35.10 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 286 SMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 286 ~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
....++..+..+++..+..++.+-..+
T Consensus 339 ~~~~~~~~L~r~~~~~~~~y~~ll~r~ 365 (444)
T TIGR03017 339 RQRDEMSVLQRDVENAQRAYDAAMQRY 365 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666665555443
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.28 E-value=20 Score=38.29 Aligned_cols=14 Identities=14% Similarity=0.332 Sum_probs=8.3
Q ss_pred HhHHHHHHHHHhhh
Q 041911 486 IIRRSCILLLEQLS 499 (624)
Q Consensus 486 ~~r~~cilLLe~l~ 499 (624)
....+++.+|.|+.
T Consensus 237 ~Fd~am~~~L~~~~ 250 (314)
T PF04111_consen 237 KFDKAMVAFLDCLQ 250 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHH
Confidence 34456666666664
No 168
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.67 E-value=1.1e+02 Score=36.28 Aligned_cols=142 Identities=19% Similarity=0.176 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 041911 85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLN-IKKEELSSVEEWINKCQAYQKELQLL-- 161 (624)
Q Consensus 85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~-~k~~eL~el~e~~~eL~~~~~~l~~~-- 161 (624)
+..++..+..+...+.....+.+++.....++....+.++.+...++..+. .+..+. .++.++..+..+--.+
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~----rll~dyselEeENislQK 111 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREA----RLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHH
Confidence 334444444445555555555555555555555555555555555555541 111111 1222222222222222
Q ss_pred -HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 162 -KNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 162 -~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
-+.+.+-+-+++.+..++..++.++.-+..++++...-.+-+..++++.-..+..-.++-..+..++..
T Consensus 112 qvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 112 QVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334566677777777777777666666665555555555555444444444444455554443
No 169
>PRK12705 hypothetical protein; Provisional
Probab=81.67 E-value=1e+02 Score=35.15 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhcCCCCCHhHHHHHHHHHHHHHHhhh
Q 041911 488 RRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKKMR 525 (624)
Q Consensus 488 r~~cilLLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~~~ 525 (624)
|..-.+-|+.|...++-.+..+-+-+..+-..+-..+.
T Consensus 251 reia~~~l~~Li~dgri~p~rIeevv~~~~~~~~~~i~ 288 (508)
T PRK12705 251 REIARLTLEKLLADGRIHPARIEEYVQKANEEFKQKIY 288 (508)
T ss_pred hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 44455566666655554444454444444444544443
No 170
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=81.39 E-value=1.5e+02 Score=36.96 Aligned_cols=293 Identities=10% Similarity=0.082 Sum_probs=0.0
Q ss_pred hhhccchHhhhhhHHHHHHhhhhhhhh-------HhhHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHH
Q 041911 13 RVAESKKETLRRSFDMAHSQANSVLLF-------TVQWKDLEEHFDLTKKSLEK-------QSNYVDVKIRLLDQRAKEI 78 (624)
Q Consensus 13 ~~~~~k~~~~r~~~~~liEEAAGI~~y-------~~rk~eA~k~L~~te~nL~r-------l~~Eie~kl~~L~~qa~~~ 78 (624)
.+..+++.+.+ .|+++..||..| ..+..++...+...+..+.. -..++...+..+..+....
T Consensus 160 ~fl~a~~~eR~----~il~~l~g~~~y~~~~~~l~er~k~~~~~l~~l~~~l~~~~~ls~e~~~~l~~~~~~l~~~~~~~ 235 (1047)
T PRK10246 160 AFLNAKPKERA----ELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQL 235 (1047)
T ss_pred HHHhCChHHHH----HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 041911 79 ESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES--LNIKKEELSSVEEWINKCQAYQK 156 (624)
Q Consensus 79 e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~--l~~k~~eL~el~e~~~eL~~~~~ 156 (624)
......+......+.....-.. .+.........+.............+... ......-+..+......+.....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~~~~~~~~~~~~~~L~~~e~a~~l~~~~~~~~~~~~~~~~~~~ 311 (1047)
T PRK10246 236 LTAQQQQQQSLNWLTRLDELQQ----EASRRQQALQQALAAEEKAQPQLAALSLAQPARQLRPHWERIQEQSAALAHTRQ 311 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchhhCchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 157 ELQLLKNLIKECCDEIELRE----KKVGEVQRSIEEREKQLAYKQRNISSIQT--LIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 157 ~l~~~~~~ieE~~kele~le----keleele~~Ieeke~el~~lq~e~e~l~~--eieel~eele~kEe~l~~l~~~I~~ 230 (624)
.+......+........... .........+......+.....-...... ........+......+..+...+..
T Consensus 312 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~ 391 (1047)
T PRK10246 312 QIEEVNTRLQSTMALRARIRHHAAKQSAELQAQQQSLNTWLAEHDRFRQWNNELAGWRAQFSQQTSDREQLRQWQQQLTH 391 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhhHHHHHHHH-HHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 231 CETKLEREKKELE-LTQSSIKELSVKFHSEE---EKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELN 306 (624)
Q Consensus 231 ~e~~ie~~~~el~-~le~ql~el~~eL~~~e---~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele 306 (624)
....+........ ............+.... ..+.............+.....++.............++....++.
T Consensus 392 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 471 (1047)
T PRK10246 392 AEQKLNALPAITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYK 471 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 041911 307 EIRKYIE 313 (624)
Q Consensus 307 ~~~kele 313 (624)
.....+.
T Consensus 472 ~~~~~~~ 478 (1047)
T PRK10246 472 EKTQQLA 478 (1047)
T ss_pred HHHHHHH
No 171
>PRK11281 hypothetical protein; Provisional
Probab=80.76 E-value=1.6e+02 Score=36.89 Aligned_cols=12 Identities=0% Similarity=-0.047 Sum_probs=5.7
Q ss_pred CCCHhHHHHHHH
Q 041911 504 EINAQVRDEAMK 515 (624)
Q Consensus 504 ~~~~~v~~~A~~ 515 (624)
..++.....+++
T Consensus 610 ~w~~~~~~~~~~ 621 (1113)
T PRK11281 610 GMPKEQVSHFRR 621 (1113)
T ss_pred CCCHHHHHHHHH
Confidence 345555444444
No 172
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=80.73 E-value=73 Score=32.86 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHE 274 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~e 274 (624)
.+..|..++.++..-|..+.....+...--.+-.
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~ 219 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQ 219 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333
No 173
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.34 E-value=1e+02 Score=34.41 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 279 SLEQKLDSMRKQQKKYFDDVELKKREL 305 (624)
Q Consensus 279 ~~~~el~~~~~e~~~l~kEle~k~~el 305 (624)
....++...+.++......+...+..+
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544444
No 174
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.86 E-value=24 Score=35.42 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 041911 274 ENEVESLEQK 283 (624)
Q Consensus 274 ekel~~~~~e 283 (624)
..+..++++.
T Consensus 197 ~~r~~ELe~~ 206 (290)
T COG4026 197 KKRWDELEPG 206 (290)
T ss_pred HHHHHHhccc
Confidence 3333333333
No 175
>PF13514 AAA_27: AAA domain
Probab=79.64 E-value=1.8e+02 Score=36.63 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 85 LVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 85 ~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~ 132 (624)
+.........+...+......+.........+...+.....++...-.
T Consensus 668 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~ 715 (1111)
T PF13514_consen 668 WEQAAARREQLEEELQQLEQELEEAEAELQEAQEALEEWQEEWQEALA 715 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555555555555555555554433
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.32 E-value=1e+02 Score=32.98 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=13.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 39 FTVQWKDLEEHFDLTKKSLEKQSNYVD 65 (624)
Q Consensus 39 y~~rk~eA~k~L~~te~nL~rl~~Eie 65 (624)
|..-=++..+.+.....-+..+..++-
T Consensus 68 Y~~sC~EL~~~I~egr~~~~~~E~et~ 94 (312)
T smart00787 68 YQFSCKELKKYISEGRDLFKEIEEETL 94 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555554444444443
No 177
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.47 E-value=92 Score=32.16 Aligned_cols=7 Identities=0% Similarity=-0.026 Sum_probs=3.0
Q ss_pred HhcCCCC
Q 041911 543 AYRLAPA 549 (624)
Q Consensus 543 ~ygl~s~ 549 (624)
+.|+...
T Consensus 274 ~q~~~~~ 280 (302)
T PF10186_consen 274 SQGIDVP 280 (302)
T ss_pred HcCCCCC
Confidence 4444443
No 178
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.44 E-value=1.5e+02 Score=34.66 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
++.+...+.+.+.+.........+++-..+.+++.++..
T Consensus 709 lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r 747 (961)
T KOG4673|consen 709 LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGR 747 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555555554444444
No 179
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=76.53 E-value=56 Score=32.88 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
+...+.....+++.+|....++-+.+..++..++.+++....+++..+.++..+...+...-.++..+.+.++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 3445566667777777777777777777777778888888877877777777777777666666666665554
No 180
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=73.40 E-value=2.5e+02 Score=35.25 Aligned_cols=17 Identities=18% Similarity=0.176 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041911 43 WKDLEEHFDLTKKSLEK 59 (624)
Q Consensus 43 k~eA~k~L~~te~nL~r 59 (624)
.+.+...+..|-..++.
T Consensus 43 ~k~~~~~l~~tl~~l~~ 59 (1109)
T PRK10929 43 QAEIVEALQSALNWLEE 59 (1109)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666777777666664
No 181
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=73.02 E-value=2e+02 Score=33.93 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 256 FHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIR 309 (624)
Q Consensus 256 L~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ 309 (624)
|.-.-.+..+...++..+..++.+..+.+......-..+..+.+..+.+++.++
T Consensus 204 lqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 204 LQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344445555555555555555555555554444444444444444444433
No 182
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=72.64 E-value=6.8 Score=41.65 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVES 279 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~ 279 (624)
.+..++..+..+...+..+..-......-|..++.++..
T Consensus 113 sIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 113 SISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKA 151 (326)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHH
Confidence 333333333333334334444444444444444444433
No 183
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.52 E-value=2e+02 Score=33.79 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 275 NEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 275 kel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.+++.+..+|..++++...+++++......+.++...|+
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg 198 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLG 198 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444444444444444443
No 184
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.41 E-value=1.7e+02 Score=32.77 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 041911 297 DVELKKREL 305 (624)
Q Consensus 297 Ele~k~~el 305 (624)
++...+.++
T Consensus 292 ~l~~~~~~l 300 (457)
T TIGR01000 292 EITDLNQKL 300 (457)
T ss_pred HHHHHHHHH
Confidence 333333333
No 185
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.62 E-value=1.3e+02 Score=31.00 Aligned_cols=53 Identities=21% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 259 EEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 259 ~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
...+..++..++......+............+...+..++...+...+....+
T Consensus 73 ~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~ 125 (246)
T PF00769_consen 73 QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEE 125 (246)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555566666665555555544444
No 186
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.67 E-value=1.8e+02 Score=32.26 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHhhHhHH
Q 041911 334 EDCSKEFQWKKKELSSIEK 352 (624)
Q Consensus 334 ~~~~k~~~~~~~~~~~~~~ 352 (624)
+.+-+..++...++.+++-
T Consensus 383 ~a~~~kie~~~~~ik~~e~ 401 (446)
T KOG4438|consen 383 NAKVKKIEEKNEEIKKIEL 401 (446)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444
No 187
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.37 E-value=95 Score=29.08 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 184 RSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 184 ~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
..+..+..++..+...+..++.+++....++...+.....+...+..
T Consensus 59 ~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~ 105 (151)
T PF11559_consen 59 DKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKS 105 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444333
No 188
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=69.08 E-value=2.1e+02 Score=32.46 Aligned_cols=28 Identities=32% Similarity=0.360 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELL 266 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~ 266 (624)
..++..++++.+++-..++..+.++.-+
T Consensus 274 ~aE~~EleDkyAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 274 TAELEELEDKYAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555666666666666655555544
No 189
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=68.59 E-value=2.5e+02 Score=33.20 Aligned_cols=9 Identities=11% Similarity=0.423 Sum_probs=4.0
Q ss_pred HhhhCCCCC
Q 041911 572 CQTLGFGDK 580 (624)
Q Consensus 572 ~~~lgl~~k 580 (624)
-+.+|+++.
T Consensus 630 q~~igisnp 638 (916)
T KOG0249|consen 630 QREIGISNP 638 (916)
T ss_pred Hhhhcccch
Confidence 344444443
No 190
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=68.48 E-value=1.2e+02 Score=31.57 Aligned_cols=38 Identities=13% Similarity=0.302 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ 282 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~ 282 (624)
+..-+...++.|..+.+-++.+-.-|.--.++++++-.
T Consensus 129 LkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 129 LKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 33333344444444455555555555555566665553
No 191
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=68.29 E-value=1.3e+02 Score=30.00 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh-h---HHhhHHHHHHHHHHHHHHHHHHH
Q 041911 179 VGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL-C---ETKLEREKKELELTQSSIKELSV 254 (624)
Q Consensus 179 leele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~-~---e~~ie~~~~el~~le~ql~el~~ 254 (624)
|+.++..|...+..+...+..+..++..+..........+.++.++.+.-.+ . -.+..+.-..--..+..+.+++.
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~ 113 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQAEEEAKE 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3334444444445555555555555555555555555555555555444222 0 01111112222233455555555
Q ss_pred hhhhHHHHHHHHHHHH
Q 041911 255 KFHSEEEKLELLHRKV 270 (624)
Q Consensus 255 eL~~~e~eleq~~~ki 270 (624)
.+.+++...+.....+
T Consensus 114 ~l~~aE~~~e~~~~~L 129 (207)
T PF05546_consen 114 ALEEAEEKVEEAFDDL 129 (207)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554433
No 192
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.04 E-value=65 Score=26.44 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041911 285 DSMRKQQKKYFDDVELKKRE 304 (624)
Q Consensus 285 ~~~~~e~~~l~kEle~k~~e 304 (624)
..+-.++..+..|++..+++
T Consensus 43 ~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 43 GDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 193
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=67.74 E-value=2.5e+02 Score=32.96 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=17.6
Q ss_pred HHHHhhHhHHHHHHhhHHHHHHHHhhhhhhh
Q 041911 343 KKKELSSIEKTIAECSKEVELKKNQLNLVQH 373 (624)
Q Consensus 343 ~~~~~~~~~~~~~~~~~e~e~k~~~~~~~~~ 373 (624)
.+.++++.+..+..+.---|-.+++|..|..
T Consensus 642 LlRQIE~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 642 LLRQIEALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 3455566666666665555555666665554
No 194
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.99 E-value=1.7e+02 Score=30.59 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHH
Q 041911 178 KVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKEL 242 (624)
Q Consensus 178 eleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el 242 (624)
.+..+..++......++.+..+-.++..+|+....+++..++++++++.--=...++.+..+.++
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL 234 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEEL 234 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 33445556666666666666777777777777777777777777776655444444444444443
No 195
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=66.33 E-value=75 Score=26.34 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 182 VQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 182 le~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~ 222 (624)
++.++.++......+..+...+..+...+..+......+|.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 196
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.97 E-value=1.6e+02 Score=30.16 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=16.4
Q ss_pred hhhhhHHHHhhHHHHhHHHHHHHHhhhhhhHHHHHHH
Q 041911 398 SLKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSI 434 (624)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 434 (624)
.+.++|..|++.|.+.--.+ -.+.+.-+++.+
T Consensus 182 EKnk~lq~QL~~L~~EL~~~-----kde~k~T~~D~~ 213 (246)
T PF00769_consen 182 EKNKRLQEQLKELKSELEQL-----KDEEKQTQLDII 213 (246)
T ss_dssp HH-HHHHHHHHHHHHHHHTT-----B-CCG--HHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH-----hhhhccchhHHH
Confidence 35667777888776665443 223445555544
No 197
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.42 E-value=1.1e+02 Score=32.59 Aligned_cols=96 Identities=19% Similarity=0.309 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 236 EREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEEL 315 (624)
Q Consensus 236 e~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~ 315 (624)
.....++..+++....+=.-..++.++...+.=.|..+...++..+..+...++++....++++..+..+..++.++..-
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~L 159 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDEL 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666667766667777888888888888888888999988888888888888888888888888888887755
Q ss_pred HhhhhhHHhhhHHHHh
Q 041911 316 SQDLASKDKQLKFVQQ 331 (624)
Q Consensus 316 ~~el~sk~~~~~~~~~ 331 (624)
...|.-.+.-+..-++
T Consensus 160 re~L~~rdeli~khGl 175 (302)
T PF09738_consen 160 REQLKQRDELIEKHGL 175 (302)
T ss_pred HHHHHHHHHHHHHCCe
Confidence 5555444444443333
No 198
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=64.23 E-value=56 Score=35.20 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Q 041911 153 AYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCE 232 (624)
Q Consensus 153 ~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e 232 (624)
++...+......+.+....+.. .+..+...+..+..++.+++....+...+..++...+.++.....-+....
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~-------~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~ 290 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAE-------KQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLS 290 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhc
Confidence 3344444455555444444444 444445555555555555555555555566666666666666666666666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHH
Q 041911 233 TKLEREKKELELTQSSIKELSV 254 (624)
Q Consensus 233 ~~ie~~~~el~~le~ql~el~~ 254 (624)
....+|...+..+..+...+-+
T Consensus 291 ~E~~RW~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 291 GEKERWSEQIEELEEQLKNLVG 312 (344)
T ss_dssp HHHHCCHCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHhcccHH
Confidence 6666677777777666655543
No 199
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=63.55 E-value=1.7e+02 Score=29.61 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSM 287 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~ 287 (624)
+...+..++..+..++.+.....+-+..+...+..++......+...
T Consensus 158 e~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~L 204 (240)
T PF12795_consen 158 ELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQAL 204 (240)
T ss_pred HHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444333333
No 200
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=63.04 E-value=2.9e+02 Score=31.94 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=15.4
Q ss_pred hHHhHHHHhhhCCChhhHHHHHhc
Q 041911 445 LLLQFFDTVKRARDPALLVLHAMS 468 (624)
Q Consensus 445 l~~e~~~Al~~a~dPa~lVLd~i~ 468 (624)
+...+-+++....+++.||+|=|.
T Consensus 440 imLAlk~i~~~~~~~ptlIFDEVD 463 (557)
T COG0497 440 IMLALKVILSRKDDTPTLIFDEVD 463 (557)
T ss_pred HHHHHHHHHhccCCCCeEEEeccc
Confidence 444555666666666688888765
No 201
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=62.50 E-value=2.8e+02 Score=31.64 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHhHHHHHH
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYE----EVLRDKEKSYGEVKK 226 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~----eele~kEe~l~~l~~ 226 (624)
...+....++-++........++.++. .-+..++..|+.+..
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~ 260 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKE 260 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 333444444444444444444444443 235556666666655
No 202
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=62.37 E-value=1.3e+02 Score=30.41 Aligned_cols=59 Identities=12% Similarity=0.289 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKR 303 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ 303 (624)
+++..+....++..++++++....++++.+++.....++.+....++..+..|....+.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~ 207 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQE 207 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444433333333
No 203
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.56 E-value=2.1e+02 Score=29.86 Aligned_cols=16 Identities=6% Similarity=0.200 Sum_probs=7.8
Q ss_pred HHHhHHHHHHHHHHHH
Q 041911 196 KQRNISSIQTLIEDYE 211 (624)
Q Consensus 196 lq~e~e~l~~eieel~ 211 (624)
.+-++..+...+.++.
T Consensus 164 a~vkV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 164 AKVKVDWLRSKLEEIL 179 (269)
T ss_pred cCcchHHHHHHHHHHH
Confidence 3444555555554443
No 204
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=61.34 E-value=2e+02 Score=29.60 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=11.5
Q ss_pred CCCHhHHHHHHHHHHHHHHhh
Q 041911 504 EINAQVRDEAMKVAGEWKKKM 524 (624)
Q Consensus 504 ~~~~~v~~~A~~lA~~Wk~~~ 524 (624)
+..|+++=.|.-+-.+.-.+.
T Consensus 240 pltp~aRisalnivgDllRkv 260 (333)
T KOG1853|consen 240 PLTPDARISALNIVGDLLRKV 260 (333)
T ss_pred CCCchhhHHHHHHHHHHHHHh
Confidence 356666666655555544444
No 205
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=61.10 E-value=95 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=4.3
Q ss_pred hHHHHHHHHHHH
Q 041911 163 NLIKECCDEIEL 174 (624)
Q Consensus 163 ~~ieE~~kele~ 174 (624)
.+|..+..+-+.
T Consensus 12 e~Ia~L~eEGek 23 (74)
T PF12329_consen 12 EQIAQLMEEGEK 23 (74)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 206
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=60.09 E-value=3.5e+02 Score=31.92 Aligned_cols=31 Identities=10% Similarity=-0.136 Sum_probs=19.6
Q ss_pred CCCchhHHH-hhhcCCchhHHHHHHHhcCCCC
Q 041911 578 GDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQ 608 (624)
Q Consensus 578 ~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~ 608 (624)
++-..+.|+ -+.....|+|.--+.+..|-++
T Consensus 681 ~~~~d~li~~~~~~~~siPaFlaaLTLELf~k 712 (716)
T KOG4593|consen 681 SHTFDPLIQVWCFARSSIPAFLAALTLELFQK 712 (716)
T ss_pred ccccchHhhhhhhcccCchHHHHHHHHHHHhh
Confidence 344555677 6667778888766666655443
No 207
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.01 E-value=2.2e+02 Score=29.58 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=12.6
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHH
Q 041911 116 CNCELHLKENELNSLSESLNIKKEEL 141 (624)
Q Consensus 116 le~Eie~le~el~~le~~l~~k~~eL 141 (624)
.+..+..+..++..+.+.+.....++
T Consensus 79 ~e~~l~~Lq~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 79 EESKLSKLQQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443333
No 208
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.74 E-value=3.2e+02 Score=31.33 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=15.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHH
Q 041911 38 LFTVQWKDLEEHFDLTKKSLEKQSNYV 64 (624)
Q Consensus 38 ~y~~rk~eA~k~L~~te~nL~rl~~Ei 64 (624)
.-+.|-+.+..+|+..+..|-.+++++
T Consensus 254 ~~e~riEtqkqtl~ardesIkkLlEmL 280 (654)
T KOG4809|consen 254 SGEQRIETQKQTLDARDESIKKLLEML 280 (654)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 344555566666666666665555554
No 209
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=58.59 E-value=2.6e+02 Score=29.89 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=37.8
Q ss_pred hHHHHHHhh-hhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041911 25 SFDMAHSQA-NSVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEI 78 (624)
Q Consensus 25 ~~~~liEEA-AGI~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~ 78 (624)
.....-+|| |-+..-+.||.+|..+|-.|=..+..-+.+=...-.+|+....++
T Consensus 88 ~nk~~keE~~~q~k~eEerRkea~~~fqvtL~diqktla~~~~~n~klre~NieL 142 (391)
T KOG1850|consen 88 ANKQTKEEACAQMKKEEERRKEAVEQFQVTLKDIQKTLAEGRSKNDKLREDNIEL 142 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 334444555 667888889999999888887777776666666666777665554
No 210
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.92 E-value=2.7e+02 Score=29.92 Aligned_cols=30 Identities=10% Similarity=0.213 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 198 RNISSIQTLIEDYEEVLRDKEKSYGEVKKS 227 (624)
Q Consensus 198 ~e~e~l~~eieel~eele~kEe~l~~l~~~ 227 (624)
.+-..++-+++.+..++..++++-+++..+
T Consensus 141 EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 141 EENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 333333333333333333333333333333
No 211
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=57.13 E-value=2.3e+02 Score=29.02 Aligned_cols=137 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhH--HhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 207 IEDYEEVLRDKEKSYGEVKKSLVLCE--TKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKL 284 (624)
Q Consensus 207 ieel~eele~kEe~l~~l~~~I~~~e--~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el 284 (624)
++....-.....+.+.-...++.... ..-..|..-|+---.++.+++.+-..++..-..........+..+..+++++
T Consensus 86 yerA~~~h~aAKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~l 165 (239)
T PF05276_consen 86 YERANSMHAAAKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKKL 165 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444332 2223344445545555666666655566666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHhhhhhhhHHHHHHHHHhhHhHHHHHHh
Q 041911 285 DSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCSKEFQWKKKELSSIEKTIAEC 357 (624)
Q Consensus 285 ~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~ 357 (624)
+..-....-....-..-...++.....| .+| ...+......+..=.+-|+.|..+|+.+
T Consensus 166 kr~I~KSrPYfe~K~~~~~~l~~~k~~v----~~L----------e~~v~~aK~~Y~~ALrnLE~ISeeIH~~ 224 (239)
T PF05276_consen 166 KRAIKKSRPYFELKAKFNQQLEEQKEKV----EEL----------EAKVKQAKSRYSEALRNLEQISEEIHEQ 224 (239)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444333333222222222221111 111 2222233334455566677777777654
No 212
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.02 E-value=1.9e+02 Score=27.84 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhH
Q 041911 197 QRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSE 259 (624)
Q Consensus 197 q~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~ 259 (624)
+-.+..+..+-..+......++.++..+...|.-.+.-+...+-.++-+.+.+.++...+.++
T Consensus 90 Q~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 90 QVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444445555555555555554444444444444444455555544444433
No 213
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=55.78 E-value=2.2e+02 Score=28.18 Aligned_cols=63 Identities=10% Similarity=0.228 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 248 SIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 310 (624)
Q Consensus 248 ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~k 310 (624)
++..+..-|+.....+.....-......++.++..=+...++.+..+.+.|...+.+|+..++
T Consensus 110 q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 110 QLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444445555555555555555555555555555555443
No 214
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=55.43 E-value=4.3e+02 Score=31.55 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 041911 286 SMRKQQKKYFDDVELKKRELNEI 308 (624)
Q Consensus 286 ~~~~e~~~l~kEle~k~~ele~~ 308 (624)
..+.++..+..+.+..+.-++.+
T Consensus 367 ~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 367 STQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554443
No 215
>PF14992 TMCO5: TMCO5 family
Probab=54.70 E-value=2.8e+02 Score=29.14 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=6.7
Q ss_pred hhhHHHhHhHHHHHHHHH
Q 041911 113 IGECNCELHLKENELNSL 130 (624)
Q Consensus 113 I~ele~Eie~le~el~~l 130 (624)
|...+..+..+..++...
T Consensus 27 i~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 27 IQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 216
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=54.36 E-value=1.2e+02 Score=34.53 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 041911 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKV 270 (624)
Q Consensus 235 ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki 270 (624)
+..+..-+..+.+++.++...+..++.++..+..++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 161 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQL 161 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555444444444443333
No 217
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.72 E-value=2.7e+02 Score=29.59 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 149 NKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 149 ~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~ 222 (624)
++...+.=+++.++..+.+... .+..+...+.++..+++.++..+..+..++..+..++......|.
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE-------~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~ 171 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEE-------TLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIE 171 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333 333344444555556666666666666666666666655555554
No 218
>PRK04406 hypothetical protein; Provisional
Probab=53.12 E-value=1.2e+02 Score=25.32 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041911 183 QRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEV 224 (624)
Q Consensus 183 e~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l 224 (624)
+.+|.+++-.+.....-++.++..+..+...|..+..++..+
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 219
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=53.03 E-value=1.1e+02 Score=30.37 Aligned_cols=58 Identities=19% Similarity=0.393 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 041911 209 DYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELL 266 (624)
Q Consensus 209 el~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~ 266 (624)
+++.-+..++.++..+..+-......+......+..+++|+.-++.-|.....+++++
T Consensus 136 e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 136 EFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344466677777766543333344445555566666666666666665555555544
No 220
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=52.77 E-value=4.4e+02 Score=30.81 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHH
Q 041911 160 LLKNLIKECCDEIELREKKVGEVQRSI 186 (624)
Q Consensus 160 ~~~~~ieE~~kele~lekeleele~~I 186 (624)
.+...+.+++-++..++++..+.++.+
T Consensus 178 DLmaevSeLKLkltalEkeq~e~E~K~ 204 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTALEKEQNETEKKL 204 (861)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 345555666666666555544443333
No 221
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=52.27 E-value=2.1e+02 Score=27.02 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041911 88 VEKKIEDCNGELECKEKELG 107 (624)
Q Consensus 88 ~~~~lee~~~~Le~~e~~l~ 107 (624)
+...+..+...+...+..+.
T Consensus 5 f~~~~~~l~~Wl~~~e~~l~ 24 (213)
T cd00176 5 FLRDADELEAWLSEKEELLS 24 (213)
T ss_pred HHHhHHHHHHHHHHHHHHhc
Confidence 34445555555555555443
No 222
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=52.12 E-value=5.9e+02 Score=32.14 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=6.1
Q ss_pred CCCHhHHHHHHH
Q 041911 504 EINAQVRDEAMK 515 (624)
Q Consensus 504 ~~~~~v~~~A~~ 515 (624)
..++.....+++
T Consensus 589 ~w~~~~v~~~~~ 600 (1109)
T PRK10929 589 GWPRERVARAMR 600 (1109)
T ss_pred CCCHHHHHHHHH
Confidence 455555555444
No 223
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.06 E-value=2.7e+02 Score=28.16 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 041911 189 REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEV 224 (624)
Q Consensus 189 ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l 224 (624)
....++..+.+...+..+.+++..+...+-+..+.+
T Consensus 170 ~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 170 KQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 224
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=51.96 E-value=2.5e+02 Score=27.87 Aligned_cols=9 Identities=22% Similarity=0.287 Sum_probs=3.2
Q ss_pred hhhHHHhHh
Q 041911 113 IGECNCELH 121 (624)
Q Consensus 113 I~ele~Eie 121 (624)
+.++...+.
T Consensus 60 ~~~~~~~~~ 68 (221)
T PF04012_consen 60 LDEAEEEAE 68 (221)
T ss_pred HHHHHHHHH
Confidence 333333333
No 225
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=51.88 E-value=4.9e+02 Score=31.17 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=12.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKEIES 80 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~e~ 80 (624)
|-.||---+-+||.+...++|
T Consensus 381 iq~EIALA~QplrsENaqLrR 401 (861)
T PF15254_consen 381 IQVEIALAMQPLRSENAQLRR 401 (861)
T ss_pred chhhhHhhhhhhhhhhHHHHH
Confidence 445555556677776655544
No 226
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.81 E-value=14 Score=40.33 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSM 287 (624)
Q Consensus 247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~ 287 (624)
.++.+++..+..++..+..+...+..+++++......+...
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~Dl 184 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDL 184 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333333
No 227
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.57 E-value=4.9e+02 Score=31.12 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=9.8
Q ss_pred HHHcHhhhHHHhHhHHHHHHHHHHH
Q 041911 108 LVQKXIGECNCELHLKENELNSLSE 132 (624)
Q Consensus 108 ~l~~~I~ele~Eie~le~el~~le~ 132 (624)
-+..++..++.++...+..++..+.
T Consensus 271 fL~~qL~~l~~~L~~aE~~l~~fr~ 295 (726)
T PRK09841 271 FLQRQLPEVRSELDQAEEKLNVYRQ 295 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444433333
No 228
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.48 E-value=1.9e+02 Score=26.38 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 041911 126 ELNSLSESL 134 (624)
Q Consensus 126 el~~le~~l 134 (624)
+...++..+
T Consensus 28 qk~~le~qL 36 (119)
T COG1382 28 QKQQLEAQL 36 (119)
T ss_pred HHHHHHHHH
Confidence 333333333
No 229
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.44 E-value=2.9e+02 Score=28.46 Aligned_cols=43 Identities=9% Similarity=0.305 Sum_probs=30.9
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041911 38 LFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIES 80 (624)
Q Consensus 38 ~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e~ 80 (624)
.|+..-..+...|..-+..-.++-.|++.+|..++.+..+++.
T Consensus 24 ~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t 66 (333)
T KOG1853|consen 24 EYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLET 66 (333)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666555889999999999998777653
No 230
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.38 E-value=4e+02 Score=32.18 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 45 DLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIED 94 (624)
Q Consensus 45 eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee 94 (624)
.|...+..-..++++++..++.+...++.+..++++...++......++.
T Consensus 501 ~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~ 550 (771)
T TIGR01069 501 QAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQ 550 (771)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666555555544444433333333
No 231
>PRK12704 phosphodiesterase; Provisional
Probab=51.09 E-value=4.3e+02 Score=30.30 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=11.6
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHH
Q 041911 39 FTVQWKDLEEHFDLTKKSLEKQSNYV 64 (624)
Q Consensus 39 y~~rk~eA~k~L~~te~nL~rl~~Ei 64 (624)
|...+..|...+...+.....+..+.
T Consensus 22 ~~i~k~~a~~~l~~Ae~eAe~I~keA 47 (520)
T PRK12704 22 YFVRKKIAEAKIKEAEEEAKRILEEA 47 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445555555444444444333
No 232
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=51.07 E-value=1.5e+02 Score=26.38 Aligned_cols=17 Identities=12% Similarity=0.288 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHHHHHHh
Q 041911 214 LRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 214 le~kEe~l~~l~~~I~~ 230 (624)
+...+.+++.+.+.+..
T Consensus 44 ~~~~~~Rl~~lE~~l~~ 60 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEH 60 (106)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33334444444444433
No 233
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=50.90 E-value=2.5e+02 Score=27.49 Aligned_cols=56 Identities=11% Similarity=0.188 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 246 QSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELK 301 (624)
Q Consensus 246 e~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k 301 (624)
.+.+.-++.+-..+-+-..-...+|.+++.++...+-+-+-++.....+...++..
T Consensus 119 lekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~lE~n 174 (178)
T PF14073_consen 119 LEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGLETN 174 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 34444444444445555666677888888888877777777777777777666653
No 234
>PRK11519 tyrosine kinase; Provisional
Probab=49.53 E-value=5.2e+02 Score=30.80 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=7.8
Q ss_pred HHHHHHHhhhhHHHHHHHHH
Q 041911 248 SIKELSVKFHSEEEKLELLH 267 (624)
Q Consensus 248 ql~el~~eL~~~e~eleq~~ 267 (624)
++.++..+....++-++.+.
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL 390 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLL 390 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334333344444333
No 235
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=49.18 E-value=3e+02 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041911 262 KLELLHRKVRLHENEV 277 (624)
Q Consensus 262 eleq~~~ki~~~ekel 277 (624)
++..+..++..++.++
T Consensus 158 e~~~l~~~~~~le~el 173 (240)
T PF12795_consen 158 ELAALEAQIEMLEQEL 173 (240)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 236
>PRK11519 tyrosine kinase; Provisional
Probab=49.08 E-value=5.3e+02 Score=30.75 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 286 SMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 286 ~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
..+.++..+..+.+..+.-++.+-..
T Consensus 367 ~~e~~~~~L~Re~~~~~~lY~~lL~r 392 (719)
T PRK11519 367 KTQQEIVRLTRDVESGQQVYMQLLNK 392 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544433
No 237
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=48.76 E-value=4.6e+02 Score=29.94 Aligned_cols=91 Identities=14% Similarity=0.289 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHhhhhhhh
Q 041911 258 SEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKDKQLKFVQQSIEDCS 337 (624)
Q Consensus 258 ~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk~~~~~~~~~~~~~~~ 337 (624)
.+-.++..+.-+..+...++.....++...+++...+..++......+..++.+ |...++.+ +
T Consensus 424 eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE-------L~TTr~NY----------E 486 (518)
T PF10212_consen 424 ELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE-------LETTRRNY----------E 486 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhH----------H
Confidence 333333333344444444444444444444444444444444444444444433 33344444 4
Q ss_pred HHHHHHHHHhhHhHHHHHHhhHHHHHHH
Q 041911 338 KEFQWKKKELSSIEKTIAECSKEVELKK 365 (624)
Q Consensus 338 k~~~~~~~~~~~~~~~~~~~~~e~e~k~ 365 (624)
.|+-.+-..+-++..++..+-++++.-+
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777778888877777776543
No 238
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.69 E-value=4.7e+02 Score=30.05 Aligned_cols=46 Identities=17% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 268 RKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 268 ~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
........+++.++.+|++.+++..+++--|...+.+++..+..+.
T Consensus 311 l~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~ 356 (772)
T KOG0999|consen 311 LFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLM 356 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHH
Confidence 3344456777888888888888888888888888887777766654
No 239
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=48.01 E-value=5.8e+02 Score=30.88 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 45 DLEEHFDLTKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKI 92 (624)
Q Consensus 45 eA~k~L~~te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~l 92 (624)
.|...+..-..++++++..++.+...++....+++....++......+
T Consensus 506 ~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l 553 (782)
T PRK00409 506 EAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEEL 553 (782)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666766777666666666665555554444444333333
No 240
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=47.67 E-value=5.5e+02 Score=30.50 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=10.7
Q ss_pred cchHHHHhhhCCCCCchhH
Q 041911 566 RQAPKFCQTLGFGDKVPGL 584 (624)
Q Consensus 566 ~~~~~L~~~lgl~~k~~~~ 584 (624)
....+..++|.|+.+|+.+
T Consensus 622 ~~~~Etl~sL~FA~rv~~~ 640 (670)
T KOG0239|consen 622 AALFETLCSLRFATRVRSV 640 (670)
T ss_pred HHHhhhhhccchHHHhhce
Confidence 3445556666666665543
No 241
>PRK04051 rps4p 30S ribosomal protein S4P; Validated
Probab=46.38 E-value=62 Score=31.61 Aligned_cols=81 Identities=15% Similarity=0.048 Sum_probs=60.5
Q ss_pred CHhHHHHHHHHHHHHHHhhhhhccChHHHHHHHHHHHHhcCCCCC-ChHHHHHHHHHhhhccchHHHHhhhCCCCCchhH
Q 041911 506 NAQVRDEAMKVAGEWKKKMRVAVENSLEVLGFLHLLAAYRLAPAF-DGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGL 584 (624)
Q Consensus 506 ~~~v~~~A~~lA~~Wk~~~~~~~~~~~ea~~fL~lla~ygl~s~f-d~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~ 584 (624)
-..++..|..|.. ..+..-....-.||.-|--|||.++= +-|++++|-+.....+..+.++..+||+..++..
T Consensus 48 ~~~iR~~Ar~Ll~------~~~~~r~~~~~~Ll~kL~~~Gil~~~~~L~~vl~L~v~~~lerRLd~il~r~gla~S~~~A 121 (177)
T PRK04051 48 LRKYRRQARSLLA------LPPEERAKEEEQLLGKLKRYGILKENATLDDVLSLTVEDILERRLQTIVYRKGLARTPKQA 121 (177)
T ss_pred HHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHcCCCCCCCCHHHHHhccHHHHHHhHHHHHHHHccCcCCHHHH
Confidence 3455555655553 11111234667899999999999764 6788888887777788899999999999999998
Q ss_pred HHhhhcCC
Q 041911 585 QCSITAEG 592 (624)
Q Consensus 585 v~li~~g~ 592 (624)
.+||..|+
T Consensus 122 r~lI~hGh 129 (177)
T PRK04051 122 RQFIVHGH 129 (177)
T ss_pred HHHHHcCC
Confidence 88888775
No 242
>COG5139 Uncharacterized conserved protein [Function unknown]
Probab=45.89 E-value=41 Score=35.16 Aligned_cols=84 Identities=21% Similarity=0.338 Sum_probs=60.4
Q ss_pred HHHHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhh------------------cCCCCCHhHHHHHHHHHHHHHHh
Q 041911 462 LVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLST------------------VAPEINAQVRDEAMKVAGEWKKK 523 (624)
Q Consensus 462 lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~------------------~~p~~~~~v~~~A~~lA~~Wk~~ 523 (624)
-|||.|.+++-|-+ ++..+...++++..-+|--|+. ++|..++.|+--|..|-..|-.-
T Consensus 209 niLdsVr~WLEPLP---D~SlP~~~IqksL~dvL~~lpI~tEHL~eSgvGrIV~FYtiskk~e~~v~r~A~~LV~eWtrp 285 (397)
T COG5139 209 NILDSVRGWLEPLP---DKSLPNIKIQKSLLDVLKTLPIHTEHLVESGVGRIVYFYTISKKEEKEVRRSAKALVQEWTRP 285 (397)
T ss_pred chHHHHHhhhccCC---CCCCcchHHHHHHHHHHhhCCchHHHhhhcCCceEEEEEecCCcccHHHHHHHHHHHHHhhcc
Confidence 57999999987654 2334555688888888877753 48899999999999999999988
Q ss_pred hhhhccC-hHHHHHHHHHHHHhcCCCCCChHHHHHH
Q 041911 524 MRVAVEN-SLEVLGFLHLLAAYRLAPAFDGEELESL 558 (624)
Q Consensus 524 ~~~~~~~-~~ea~~fL~lla~ygl~s~fd~~el~~l 558 (624)
|-...+| .=-+.| +-+||.+-+.+-
T Consensus 286 Iik~s~nyRDk~i~----------~~~F~~E~~~~k 311 (397)
T COG5139 286 IIKPSGNYRDKRIM----------QLEFDSEKLRKK 311 (397)
T ss_pred ccCcCCCcchhhhh----------eeecCHHHHHHH
Confidence 7655443 222322 347888877654
No 243
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=45.88 E-value=1.7e+02 Score=24.19 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 259 EEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVEL 300 (624)
Q Consensus 259 ~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~ 300 (624)
+++.+.++..-|..+..++...+.+-.....++..+..+...
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333333333333333
No 244
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=45.32 E-value=2.1e+02 Score=25.01 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 041911 241 ELELTQSSIKELSVKFHSEEEKLELL 266 (624)
Q Consensus 241 el~~le~ql~el~~eL~~~e~eleq~ 266 (624)
+...+..++.++...+..++.++...
T Consensus 75 e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 75 EVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443
No 245
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=44.62 E-value=1.6e+02 Score=23.58 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 222 GEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQK 283 (624)
Q Consensus 222 ~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~e 283 (624)
.+++.+|..+ .....++......-..+..+|.+.+.....+..+|..+.++++....+
T Consensus 4 saL~~Eirak----Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 4 SALEAEIRAK----QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 246
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed
Probab=44.59 E-value=1.4e+02 Score=30.56 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=73.9
Q ss_pred cchhhHhHHHHHHHHHhhhhcCCCC----CHhHHHHHHHHHHHHHHhhh-h-hccChHHHHHHHHHHHHhcCCCCCChHH
Q 041911 481 EFDVSIIRRSCILLLEQLSTVAPEI----NAQVRDEAMKVAGEWKKKMR-V-AVENSLEVLGFLHLLAAYRLAPAFDGEE 554 (624)
Q Consensus 481 ~~~~~~~r~~cilLLe~l~~~~p~~----~~~v~~~A~~lA~~Wk~~~~-~-~~~~~~ea~~fL~lla~ygl~s~fd~~e 554 (624)
.|-..+++..|+-.+..-..-.+.+ +.+--+.-......|..-.. . +..-..|..-|-.-|.-|||.
T Consensus 75 awl~~Iirn~~iDylRk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~L~~~gi~------- 147 (237)
T PRK08311 75 SFAELVIKRRLIDYFRKESKHNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKELKEFGIT------- 147 (237)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------
Confidence 3445667777877776654422211 11111122223333432111 1 122367999999999999996
Q ss_pred HHHHHHHhhhccchHHHHhhhCCC-CCchhHHH-----------------------hhhcCCchhHHHHHHHhcCCCCCC
Q 041911 555 LESLLCIVAQHRQAPKFCQTLGFG-DKVPGLQC-----------------------SITAEGRSSSSMLVGTSAPTNQPV 610 (624)
Q Consensus 555 l~~l~~~v~~~~~~~~L~~~lgl~-~k~~~~v~-----------------------li~~g~~i~Av~~~~~f~l~~~f~ 610 (624)
+-+|+..++.|+.+-.+|-.+... -.=|.+.+ +=.+.+||-||-+|+ .+
T Consensus 148 ~~dL~~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l~~kk~LP~k~l~~~~~v~rktier~rkyIia~~li~-------~~ 220 (237)
T PRK08311 148 FEDLVKESPKHRDTRENAIKIAKTIAENEELLEKLKRKKKLPLKELEKRVKVSRKTLERNRKYIIAVAIIL-------AG 220 (237)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCHHHHHHHcCCCHHHHHhhhHHHHHHHHHH-------cC
Confidence 567888888888766555433311 22233333 223567888888887 34
Q ss_pred CcccchhhhhCCC
Q 041911 611 PGPMNLPQYTGMN 623 (624)
Q Consensus 611 p~~llk~y~~~~~ 623 (624)
..|.|++||....
T Consensus 221 ~~~~l~~y~~~~~ 233 (237)
T PRK08311 221 DYPYLKEYIRGEE 233 (237)
T ss_pred CcHHHHHHHhhhc
Confidence 5678999997643
No 247
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.39 E-value=41 Score=29.58 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhccchHHHHhhhCC
Q 041911 533 EVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGF 577 (624)
Q Consensus 533 ea~~fL~lla~ygl~s~fd~~el~~l~~~v~~~~~~~~L~~~lgl 577 (624)
+..=|.+|+--||..+....++++.|+..++.+.-|+...+.+|-
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~ 72 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGA 72 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccH
Confidence 566788999999999999999999999999999999999999993
No 248
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.97 E-value=1.9e+02 Score=28.15 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 041911 150 KCQAYQKELQLLKN 163 (624)
Q Consensus 150 eL~~~~~~l~~~~~ 163 (624)
++....+.++....
T Consensus 126 ~l~~~~~~~~~~~k 139 (192)
T PF05529_consen 126 ELIKLEEKLEALKK 139 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 249
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=42.37 E-value=1.6e+02 Score=23.98 Aligned_cols=43 Identities=19% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041911 186 IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL 228 (624)
Q Consensus 186 Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I 228 (624)
|.+++..+......++.++..+..+...|..++..+..+...+
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444444333333
No 250
>PF14992 TMCO5: TMCO5 family
Probab=42.34 E-value=4.3e+02 Score=27.77 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=5.1
Q ss_pred ChHHHHHHHHHhhh
Q 041911 551 DGEELESLLCIVAQ 564 (624)
Q Consensus 551 d~~el~~l~~~v~~ 564 (624)
|.|-+.++++.+-.
T Consensus 243 npdll~~~LP~~L~ 256 (280)
T PF14992_consen 243 NPDLLEDVLPKMLS 256 (280)
T ss_pred CcHHHHHHhHHhcc
Confidence 33333333333333
No 251
>PRK00106 hypothetical protein; Provisional
Probab=42.26 E-value=5.9e+02 Score=29.35 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=3.6
Q ss_pred hhhhhhhhH
Q 041911 32 QANSVLLFT 40 (624)
Q Consensus 32 EAAGI~~y~ 40 (624)
+||..+.+.
T Consensus 31 ~~~~~~~~~ 39 (535)
T PRK00106 31 EAAELTLLN 39 (535)
T ss_pred HHHHHHHHH
Confidence 344444333
No 252
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=42.14 E-value=6.6e+02 Score=29.82 Aligned_cols=112 Identities=17% Similarity=0.153 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh---HHhhHHH
Q 041911 162 KNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC---ETKLERE 238 (624)
Q Consensus 162 ~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~---e~~ie~~ 238 (624)
...+..+..+...+++.+.+++.....-.+.+...+.+.+.+..++.....+++.--..+..+.+-|... +..-..|
T Consensus 161 q~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w 240 (739)
T PF07111_consen 161 QEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW 240 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH
Confidence 3344444455555555555555555555566666666666665555555555555444444444444322 1112234
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLH 273 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ 273 (624)
..+-..+...+.-+...=.++.+..+-++.++..+
T Consensus 241 e~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL 275 (739)
T PF07111_consen 241 EPEREELLETVQHLQEDRDALQATAELLQVRVQSL 275 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 253
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=41.40 E-value=3.5e+02 Score=26.48 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=6.7
Q ss_pred HHHHHHHhHHHHHHHH
Q 041911 213 VLRDKEKSYGEVKKSL 228 (624)
Q Consensus 213 ele~kEe~l~~l~~~I 228 (624)
.++.++..+..+.+.-
T Consensus 121 kLe~LE~E~~rLt~~Q 136 (178)
T PF14073_consen 121 KLEKLEKEYLRLTATQ 136 (178)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 254
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=40.80 E-value=4.5e+02 Score=27.58 Aligned_cols=37 Identities=24% Similarity=0.540 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 277 VESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 277 l~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
++..+.-|..+.+-+...+.++...-+.+|.+-.-++
T Consensus 133 ieTmrssL~ekDkGiQKYFvDINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 133 IETMRSSLAEKDKGIQKYFVDINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHH
Confidence 3334444444455556666677776666666655444
No 255
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=40.55 E-value=5.7e+02 Score=28.66 Aligned_cols=99 Identities=11% Similarity=0.126 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 205 TLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKL 284 (624)
Q Consensus 205 ~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el 284 (624)
.-|..++.++...+-++..+...+....-.|......+..++.|++....++.+.... ..+...-.+.+.+.-+.
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~-----~~la~~laeYe~L~le~ 360 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGS-----QGSSESLSLFEDLRLQS 360 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCC-----CchhHHHHHHHHHHHHH
Confidence 3444455555555555554444433333444445555555555555555554321100 00111223334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 285 DSMRKQQKKYFDDVELKKRELNEI 308 (624)
Q Consensus 285 ~~~~~e~~~l~kEle~k~~ele~~ 308 (624)
.-+++.+..-+.-++..+-+....
T Consensus 361 efAe~~y~sAlaaLE~AR~EA~RQ 384 (434)
T PRK15178 361 EIAKARWESALQTLQQGKLQALRE 384 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555555544444433
No 256
>PRK02119 hypothetical protein; Provisional
Probab=40.42 E-value=2.1e+02 Score=23.66 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q 041911 186 IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSY 221 (624)
Q Consensus 186 Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l 221 (624)
|.+++-.+.....-++.++..+..+...|..+..++
T Consensus 11 i~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql 46 (73)
T PRK02119 11 IAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQL 46 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 257
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=40.15 E-value=6.2e+02 Score=28.98 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHhhh
Q 041911 512 EAMKVAGEWKKKMR 525 (624)
Q Consensus 512 ~A~~lA~~Wk~~~~ 525 (624)
+|..||.+-+.+|-
T Consensus 477 ~~~~la~~i~~~ie 490 (514)
T TIGR03319 477 QAVVLARDIAKKIE 490 (514)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 258
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=39.30 E-value=6.3e+02 Score=28.81 Aligned_cols=18 Identities=6% Similarity=-0.132 Sum_probs=11.8
Q ss_pred HhhHHhHHHHhhhCCChh
Q 041911 443 KNLLLQFFDTVKRARDPA 460 (624)
Q Consensus 443 ~~l~~e~~~Al~~a~dPa 460 (624)
++....+|+++...|.+.
T Consensus 450 ~d~~~r~~~~~~~~~~d~ 467 (511)
T PF09787_consen 450 DDAESRVPLLMKDSPHDI 467 (511)
T ss_pred CchhhhhhhhccCCCccc
Confidence 345555888888876554
No 259
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=39.10 E-value=7.5e+02 Score=29.62 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 041911 148 INKCQAYQKELQLLKNLIKECCDEIELREKKVGE 181 (624)
Q Consensus 148 ~~eL~~~~~~l~~~~~~ieE~~kele~lekelee 181 (624)
.+++.++...+..+.+++++...-.+-.++++++
T Consensus 127 Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleE 160 (717)
T PF09730_consen 127 KHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEE 160 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666555555544455444
No 260
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=39.00 E-value=6.4e+02 Score=28.83 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHH--HHHHHH
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKE--NELNSL 130 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le--~el~~l 130 (624)
.....+.+.++.....+.|..++.+-+++. .++.++
T Consensus 300 stes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kI 337 (518)
T PF10212_consen 300 STESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKI 337 (518)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666666666776666666644 444444
No 261
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=38.82 E-value=2.3e+02 Score=25.07 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041911 182 VQRSIEEREKQLAYK--QRNISSIQTLIEDYEEVLRDKEKSYGEVK 225 (624)
Q Consensus 182 le~~Ieeke~el~~l--q~e~e~l~~eieel~eele~kEe~l~~l~ 225 (624)
...++...+..++.+ ..++..++..+.++..++.....+++.+.
T Consensus 47 ~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 47 HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444444444444 44444444444444444444444444443
No 262
>COG5283 Phage-related tail protein [Function unknown]
Probab=38.65 E-value=9.2e+02 Score=30.50 Aligned_cols=43 Identities=7% Similarity=0.220 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 041911 189 REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLC 231 (624)
Q Consensus 189 ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~ 231 (624)
+....+.....+..++++..+..+.....++.+++........
T Consensus 62 l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqa 104 (1213)
T COG5283 62 LSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQA 104 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555554444555555444444443
No 263
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=37.78 E-value=4.1e+02 Score=26.23 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 260 EEKLELLHRKVRLHENEVESLEQKLDSM 287 (624)
Q Consensus 260 e~eleq~~~ki~~~ekel~~~~~el~~~ 287 (624)
..-++..+.++.++.+++..-..++...
T Consensus 143 ~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 143 TQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 264
>TIGR01018 rpsD_arch ribosomal protein S4(archaeal type)/S9(eukaryote cytosolic type). This model finds eukaryotic ribosomal protein S9 as well as archaeal ribosomal protein S4.
Probab=37.24 E-value=1e+02 Score=29.77 Aligned_cols=60 Identities=12% Similarity=0.005 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCCC--CCChHHHHHHHHHhhhccchHHHHhhhCCCCCchhHHHhhhcCC
Q 041911 533 EVLGFLHLLAAYRLAP--AFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQCSITAEG 592 (624)
Q Consensus 533 ea~~fL~lla~ygl~s--~fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~v~li~~g~ 592 (624)
..-+||--|.-|||.+ .-+-|++.+|=+..-..+..+-+.-.+||+..++...+||.-|.
T Consensus 69 ~~~~LL~kL~~~Gll~e~~~~Ld~vl~Ltv~~~leRRL~~vv~r~g~a~s~~~ArqlI~hgH 130 (162)
T TIGR01018 69 EGNQLLRRLVRLGILDEENAKLDDVLGLTVEDFLERRLQTQVFKKGLARTIHQARQLIVHGH 130 (162)
T ss_pred HHHHHHHHHHHcCCCccccCCHHHHHhccHHHHHHHhHhhHhhhccCcCCHHHHHHHhhCCC
Confidence 5578999999999997 45888998887777777777777788899999999888888764
No 265
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=36.99 E-value=4.2e+02 Score=26.14 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=27.1
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 35 SVLLFTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQR 74 (624)
Q Consensus 35 GI~~y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~q 74 (624)
++..|-..+.....++..+...-..|+.+-...-+.+.++
T Consensus 14 ~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke 53 (201)
T PF12072_consen 14 IGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIKKE 53 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777778877777777777666666655554
No 266
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=36.92 E-value=2.5e+02 Score=23.43 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=42.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 250 KELSVKFHSEEEKLELLHRKVRLHENEVESL-EQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 250 ~el~~eL~~~e~eleq~~~ki~~~ekel~~~-~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
++....+..+.++==.++.+|-+++..+... -.....+-+++..+--++...++++...++.|.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~ 67 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLK 67 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667788888888888743 334566667777777777777777776666654
No 267
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.86 E-value=6e+02 Score=27.80 Aligned_cols=172 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHhhhhhhhhHhhHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 30 HSQANSVLLFTVQWKDLEEHFDL------------TKKSLEKQSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNG 97 (624)
Q Consensus 30 iEEAAGI~~y~~rk~eA~k~L~~------------te~nL~rl~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~ 97 (624)
+-..|-+..|+.|-...++-++- ....|...+..|..++.-|.. ..+..+..++..+..
T Consensus 205 ~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~---------~~Ld~i~~rl~~L~~ 275 (388)
T PF04912_consen 205 SQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDP---------AKLDSIERRLKSLLS 275 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCH---------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 041911 98 ELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREK 177 (624)
Q Consensus 98 ~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lek 177 (624)
+++.+.......... ..-...|..+..-+..+......+ =.+......|..+.....+....+..++.
T Consensus 276 ~~~~l~~~~~~~~~~-~~~e~KI~eLy~~l~~~~~~~~~l-----------P~lv~RL~tL~~lH~~a~~~~~~l~~le~ 343 (388)
T PF04912_consen 276 ELEELAEKRKEAKED-AEQESKIDELYEILPRWDPYAPSL-----------PSLVERLKTLKSLHEEAAEFSQTLSELES 343 (388)
T ss_pred HHHHHHhcccccccc-ccchhHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 041911 178 KVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVK 225 (624)
Q Consensus 178 eleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~ 225 (624)
....+...+...+..+...+.. +......+...+..++.++..++
T Consensus 344 ~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 344 QQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 268
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.83 E-value=4.7e+02 Score=26.58 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHH
Q 041911 88 VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES-LNIKKEELSS-VEEWINKCQAYQKELQLLKNLI 165 (624)
Q Consensus 88 ~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~-l~~k~~eL~e-l~e~~~eL~~~~~~l~~~~~~i 165 (624)
+...|......+....+.+..+-..-..++.++.....+....+.+ ...+...-+. ....+.....+.+.+......+
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH------------------HHHHHHHHHHHHHHHhHHHHH--
Q 041911 166 KECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQ------------------TLIEDYEEVLRDKEKSYGEVK-- 225 (624)
Q Consensus 166 eE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~------------------~eieel~eele~kEe~l~~l~-- 225 (624)
.......+.++..+..++..|.+.......+.......+ ..++.++..++..+.+-....
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~~el 188 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAAAEL 188 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHhHHh
Q ss_pred --HHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhh
Q 041911 226 --KSLVLCETKLEREKKELELTQSSIKELSVKFHS 258 (624)
Q Consensus 226 --~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~ 258 (624)
..-......+...+. .....++++.++.++..
T Consensus 189 ~~~~~~dl~~e~a~~~~-~~~v~~~La~lka~~~~ 222 (225)
T COG1842 189 AEGSGDDLDKEFAQAGA-QSAVDSRLAALKARMKG 222 (225)
T ss_pred hccCcccHHHHHHHhcc-cccHHHHHHHHHHhhcc
No 269
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.57 E-value=4e+02 Score=28.70 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 235 LEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ 290 (624)
Q Consensus 235 ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e 290 (624)
.++...+-..+++.-+.+..++.++.+-++.+...|.|-.+++++....+++.+..
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~ 61 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKS 61 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 33445555556666666777777777777778888888777777777777776543
No 270
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=36.52 E-value=5.2e+02 Score=27.02 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLH 273 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ 273 (624)
+.++.....++.++..+|..++.+...+.+.+...
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555554444444444444333
No 271
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=35.81 E-value=4.6e+02 Score=26.21 Aligned_cols=183 Identities=10% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHH
Q 041911 88 VEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSES-LNIKKEELSS-VEEWINKCQAYQKELQLLKNLI 165 (624)
Q Consensus 88 ~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~-l~~k~~eL~e-l~e~~~eL~~~~~~l~~~~~~i 165 (624)
+..-+......+...+..+..+-..-..++.++......+.....+ ...+...-++ ...-+.........+..+..++
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHhhHHhhHHHHHH
Q 041911 166 KECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEE----VLRDKEKSYGEVKKSLVLCETKLEREKKE 241 (624)
Q Consensus 166 eE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~e----ele~kEe~l~~l~~~I~~~e~~ie~~~~e 241 (624)
......++.+...+..++..+.+....-..+......+.....-... .....-..+..+...+...+...+.....
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~~ 188 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDLG 188 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q ss_pred -HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041911 242 -LELTQSSIKELSVKFHSEEEKLELLHRKVR 271 (624)
Q Consensus 242 -l~~le~ql~el~~eL~~~e~eleq~~~ki~ 271 (624)
..++..++.++... .+.+.++..++.+++
T Consensus 189 ~~~~l~~~l~~l~~~-~~vd~eLa~LK~~~~ 218 (219)
T TIGR02977 189 RKPSLEDEFAELEAD-DEIERELAALKAKMK 218 (219)
T ss_pred CCCCHHHHHHHhcCC-ChHHHHHHHHHhhhC
No 272
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=35.53 E-value=5.7e+02 Score=27.20 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 242 LELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLE 281 (624)
Q Consensus 242 l~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~ 281 (624)
+......++++..+|...+..+++..-+.......+....
T Consensus 129 ~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 129 QADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLT 168 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554444433
No 273
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=35.16 E-value=3.4e+02 Score=26.74 Aligned_cols=67 Identities=12% Similarity=0.121 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
+-+......+..++.++.....++..+...++..+.-....+.....+-+++.+.+++++.++-++.
T Consensus 74 ~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~ 140 (203)
T KOG3433|consen 74 EAICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELA 140 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666777777777777777777777777777777777777777777777777776665
No 274
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=34.39 E-value=2.6e+02 Score=22.88 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 041911 207 IEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLE 264 (624)
Q Consensus 207 ieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~ele 264 (624)
+......+...++.|..+.-++.+.. ...-..+..++..++.++..+..++.
T Consensus 27 i~~~e~~l~ea~~~l~qMe~E~~~~p------~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 27 IREIERDLDEAEELLKQMELEVRSLP------PSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTS-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444431 12334455555555555555555443
No 275
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.35 E-value=8.5e+02 Score=28.85 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=24.2
Q ss_pred hHHHHhhhCCCCCchhHHH-hhhcCCchhHHHH
Q 041911 568 APKFCQTLGFGDKVPGLQC-SITAEGRSSSSML 599 (624)
Q Consensus 568 ~~~L~~~lgl~~k~~~~v~-li~~g~~i~Av~~ 599 (624)
.+..-+.++....-|+... +...+..+..|-+
T Consensus 619 ~~~~~r~~~~~~~~~~~s~k~~~~~~~~~~ss~ 651 (660)
T KOG4302|consen 619 NSEKKRLLSKSSSSPDTSGKLNSPPNEPEFSSY 651 (660)
T ss_pred chhhhcccchhccCCchhhhhcCCCCCcccccc
Confidence 4556677888888888888 8888887776643
No 276
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=34.26 E-value=5.5e+02 Score=26.64 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHHHH
Q 041911 66 VKIRLLDQRAKEIESK 81 (624)
Q Consensus 66 ~kl~~L~~qa~~~e~~ 81 (624)
..-.+|+.|...+.+.
T Consensus 115 ~se~~lkqQ~~~a~Rr 130 (330)
T KOG2991|consen 115 ESEEKLKQQQQEAARR 130 (330)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666665555443
No 277
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.69 E-value=7.6e+02 Score=27.76 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKE 77 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~ 77 (624)
.+.+...+...|.+|-.+
T Consensus 301 ~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 301 KLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555554333
No 278
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.03 E-value=6.4e+02 Score=26.70 Aligned_cols=142 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHh
Q 041911 43 WKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQR-AKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELH 121 (624)
Q Consensus 43 k~eA~k~L~~te~nL~rl~~Eie~kl~~L~~q-a~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie 121 (624)
|+--...|.....|++.-+.+..+.|++|-.+ ...+++...+-..+-..+..+.....+....+..++........-.+
T Consensus 225 WR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~ 304 (384)
T KOG0972|consen 225 WRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 041911 122 LKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEE 188 (624)
Q Consensus 122 ~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Iee 188 (624)
.....++.+...++.+.+++++--....+=.++ -.+...+..++.....+.-++.-++..+.+
T Consensus 305 ~rT~~L~eVm~e~E~~KqemEe~G~~msDGapl----vkIkqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 305 SRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPL----VKIKQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCchH----HHHHHHHHHHHHHHHhhhhheehhhHHHHH
No 279
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=31.73 E-value=4.3e+02 Score=24.59 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 041911 234 KLEREKKELELTQSSIKELSVKF-----HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKREL-NE 307 (624)
Q Consensus 234 ~ie~~~~el~~le~ql~el~~eL-----~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~el-e~ 307 (624)
.+...-.+...+..++.++..++ .++......+...+..+..........+......+..+.........+. ..
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~ 81 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKE 81 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHH---HHHhhhhhHHhhhHHHHhhhh
Q 041911 308 IRKYIE---ELSQDLASKDKQLKFVQQSIE 334 (624)
Q Consensus 308 ~~kele---~~~~el~sk~~~~~~~~~~~~ 334 (624)
.+++++ -.+-+++.|...++.+-..++
T Consensus 82 ~q~EldDLL~ll~Dle~K~~kyk~rLk~LG 111 (136)
T PF04871_consen 82 AQSELDDLLVLLGDLEEKRKKYKERLKELG 111 (136)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHcC
No 280
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.48 E-value=3.5e+02 Score=23.56 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVR 271 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~ 271 (624)
+-.+...+..++..+..+.......|+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~sk~I~ 60 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNELSKEIG 60 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333334444444444444444444443
No 281
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=31.36 E-value=7.3e+02 Score=27.17 Aligned_cols=283 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHH
Q 041911 5 TVNISEELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK--QSNYVDVKIRLLDQRAKEIESKE 82 (624)
Q Consensus 5 ~~~~~~~~~~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r--l~~Eie~kl~~L~~qa~~~e~~~ 82 (624)
+.++..-+.-+..=+..|.+.+..|.+|.--...|+.+=+.|+..+..--.=..+ -..+=.+..+...-.++. .+.
T Consensus 45 ~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~--eL~ 122 (384)
T PF03148_consen 45 NKRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEK--ELL 122 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHH--------------------------------
Q 041911 83 IKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELNSL-------------------------------- 130 (624)
Q Consensus 83 ~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~l-------------------------------- 130 (624)
++...+..--..+...++....++..+......++..++....-+.--
T Consensus 123 kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W 202 (384)
T PF03148_consen 123 KEVELIENIKRLLQRTLEQAEEQLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESW 202 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 131 ----SESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTL 206 (624)
Q Consensus 131 ----e~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~e 206 (624)
...+.....++.....+...+.....+............. .++...+.+......+++-++.....++......
T Consensus 203 ~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn--~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~ 280 (384)
T PF03148_consen 203 EEFSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVN--AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN 280 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhh-----------------HHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 041911 207 IEDYEEVLRDKEKSYGEVKKSLVLC-----------------ETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRK 269 (624)
Q Consensus 207 ieel~eele~kEe~l~~l~~~I~~~-----------------e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~k 269 (624)
|..+...+..+..-+.-.++.+... -.++......+..+..++.++...+..+......+...
T Consensus 281 i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~d 360 (384)
T PF03148_consen 281 IEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEED 360 (384)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041911 270 VRLHENEVESLEQKLDSMRKQQ 291 (624)
Q Consensus 270 i~~~ekel~~~~~el~~~~~e~ 291 (624)
|..+..-+.-...+.......+
T Consensus 361 i~~K~~sL~iD~~~c~~~R~~~ 382 (384)
T PF03148_consen 361 IAVKNNSLFIDRERCMQLRRRY 382 (384)
T ss_pred HHHHHHHHHhhHHHHHHHhccC
No 282
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.14 E-value=4.4e+02 Score=25.05 Aligned_cols=9 Identities=22% Similarity=0.446 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 041911 204 QTLIEDYEE 212 (624)
Q Consensus 204 ~~eieel~e 212 (624)
+.+|+.++.
T Consensus 57 k~~i~~lq~ 65 (155)
T PF06810_consen 57 KKQIEELQA 65 (155)
T ss_pred HHHHHHHHH
Confidence 333333333
No 283
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.02 E-value=3.7e+02 Score=26.74 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=23.4
Q ss_pred cHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 111 KXIGECNCELHLKENELNSLSESLNIKKEELSSV 144 (624)
Q Consensus 111 ~~I~ele~Eie~le~el~~le~~l~~k~~eL~el 144 (624)
..+..+...|...+.++..++.++..+..+|..+
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777777777777777777676666554
No 284
>PLN02939 transferase, transferring glycosyl groups
Probab=30.56 E-value=1.1e+03 Score=29.19 Aligned_cols=201 Identities=16% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHHHhHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 041911 43 WKDLEEHFDLTKKSLEK-------------QSNYVDVKIRLLDQR---------------AKEIESKEIKLVFVEKKIED 94 (624)
Q Consensus 43 k~eA~k~L~~te~nL~r-------------l~~Eie~kl~~L~~q---------------a~~~e~~~~e~~~~~~~lee 94 (624)
|+....++.-.+++|.+ -..=++.++++|+.+ ..++.-++.+-..++..+.-
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (977)
T PLN02939 165 KEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQF 244 (977)
T ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHH
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSV-----EEWINKCQAYQKELQLLKNLIKECC 169 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el-----~e~~~eL~~~~~~l~~~~~~ieE~~ 169 (624)
+...+...... ...+-.++++..-++.-+..++..+...+.....+ +-+......++.-++....+.+
T Consensus 245 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 317 (977)
T PLN02939 245 LKAELIEVAET----EERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVE--- 317 (977)
T ss_pred HHHHHHHHHhh----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHH
Q 041911 170 DEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSI 249 (624)
Q Consensus 170 kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql 249 (624)
+....-.+-+++.+.++.++..+....-..-... .++-++..++..+++++.-..+|.+ .+.-|+..+
T Consensus 318 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 385 (977)
T PLN02939 318 -KAALVLDQNQDLRDKVDKLEASLKEANVSKFSSY-KVELLQQKLKLLEERLQASDHEIHS----------YIQLYQESI 385 (977)
T ss_pred -HHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHH-HHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHHHHHH
Q ss_pred HHHHHhhhhHHHH
Q 041911 250 KELSVKFHSEEEK 262 (624)
Q Consensus 250 ~el~~eL~~~e~e 262 (624)
.++...|+.+..+
T Consensus 386 ~~~~~~~~~~~~~ 398 (977)
T PLN02939 386 KEFQDTLSKLKEE 398 (977)
T ss_pred HHHHHHHHHHHhh
No 285
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.21 E-value=3.1e+02 Score=22.44 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 041911 244 LTQSSIKELSVKFHSEEEKLELLHRKVRLHE 274 (624)
Q Consensus 244 ~le~ql~el~~eL~~~e~eleq~~~ki~~~e 274 (624)
.....+..+...|.+++.-+.++..++...-
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p 52 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLP 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455566666666666666666666665553
No 286
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.99 E-value=3.8e+02 Score=24.44 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=47.8
Q ss_pred hhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhh----------------------c
Q 041911 444 NLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLST----------------------V 501 (624)
Q Consensus 444 ~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~----------------------~ 501 (624)
++-.++...++..++.|+.++.+|..-+..+. +..+. ..+.||+.++. +
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n--------~~vql-~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~ 89 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGN--------PHVQL-LALTLLELLVKNCGKPFHLQVADKEFLLELVKIA 89 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCC--------HHHHH-HHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHh
Confidence 45566777777777778888887775442211 11122 12334443331 2
Q ss_pred C--CCCCHhHHHHHHHHHHHHHHhhhhh
Q 041911 502 A--PEINAQVRDEAMKVAGEWKKKMRVA 527 (624)
Q Consensus 502 ~--p~~~~~v~~~A~~lA~~Wk~~~~~~ 527 (624)
+ |..++.|+..+..+...|...+..+
T Consensus 90 ~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 90 KNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2 3689999999999999999988765
No 287
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.96 E-value=5.5e+02 Score=25.33 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=4.9
Q ss_pred HhHHHHHHHHHHH
Q 041911 120 LHLKENELNSLSE 132 (624)
Q Consensus 120 ie~le~el~~le~ 132 (624)
+..+..-+..++.
T Consensus 71 f~~~~~tl~~LE~ 83 (190)
T PF05266_consen 71 FESLMKTLSELEE 83 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 288
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.93 E-value=3.7e+02 Score=25.87 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=31.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 249 IKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKK 302 (624)
Q Consensus 249 l~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~ 302 (624)
...+..+...++.+...+..++..+++++..+.+++...+.++..++.=++..+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR 152 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR 152 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666666666666666666666666665555444
No 289
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=29.65 E-value=1.7e+02 Score=27.07 Aligned_cols=77 Identities=17% Similarity=0.348 Sum_probs=52.4
Q ss_pred hhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhh----------------------c
Q 041911 444 NLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLST----------------------V 501 (624)
Q Consensus 444 ~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~----------------------~ 501 (624)
+.-.++...++..+++|+-++.+|..-+..+ ++. +-.-|+.||+.++. +
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~~--------~~~-vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~ 94 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKHG--------NPN-VQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLI 94 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTTS--------SHH-HHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhCC--------CHH-HHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHH
Confidence 4555778888888999999999988655321 112 23346777777763 1
Q ss_pred -CCCCCHh--HHHHHHHHHHHHHHhhhhhcc
Q 041911 502 -APEINAQ--VRDEAMKVAGEWKKKMRVAVE 529 (624)
Q Consensus 502 -~p~~~~~--v~~~A~~lA~~Wk~~~~~~~~ 529 (624)
++...+. |++.+..+-..|...+...+.
T Consensus 95 ~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~ 125 (140)
T PF00790_consen 95 KSKKTDPETPVKEKILELLQEWAEAFKSDPE 125 (140)
T ss_dssp HHTTTHHHSHHHHHHHHHHHHHHHHTTTSTT
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHCCCCC
Confidence 2334444 999999999999999954443
No 290
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.49 E-value=5.4e+02 Score=27.78 Aligned_cols=7 Identities=29% Similarity=0.354 Sum_probs=2.7
Q ss_pred hhhCCCC
Q 041911 573 QTLGFGD 579 (624)
Q Consensus 573 ~~lgl~~ 579 (624)
-.||+++
T Consensus 305 ~~l~~gN 311 (330)
T PF07851_consen 305 LILFLGN 311 (330)
T ss_pred HHHHhhh
Confidence 3344433
No 291
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.19 E-value=5.4e+02 Score=25.06 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHhhHHhhHHHHH
Q 041911 177 KKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEV--LRDKEKSYGEVKKSLVLCETKLEREKK 240 (624)
Q Consensus 177 keleele~~Ieeke~el~~lq~e~e~l~~eieel~ee--le~kEe~l~~l~~~I~~~e~~ie~~~~ 240 (624)
.++..+...|...+..+.+++........+|..+... ++..++.++.+..+++...+++.....
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 292
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.04 E-value=3.7e+02 Score=22.99 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 198 RNISSIQTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 198 ~e~e~l~~eieel~eele~kEe~l~ 222 (624)
.....+...+..+...+..+.+.+.
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 293
>PRK02793 phi X174 lysis protein; Provisional
Probab=28.85 E-value=3.3e+02 Score=22.43 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 041911 186 IEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEK 219 (624)
Q Consensus 186 Ieeke~el~~lq~e~e~l~~eieel~eele~kEe 219 (624)
|.+++-.+.....-++.+...+..+...|..+..
T Consensus 10 i~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~ 43 (72)
T PRK02793 10 LAELESRLAFQEITIEELNVTVTAHEMEMAKLRD 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 294
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=28.45 E-value=8.4e+02 Score=26.99 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=4.0
Q ss_pred HHHHHHHhHH
Q 041911 213 VLRDKEKSYG 222 (624)
Q Consensus 213 ele~kEe~l~ 222 (624)
..+.+|+++.
T Consensus 259 R~erLEeqlN 268 (395)
T PF10267_consen 259 RYERLEEQLN 268 (395)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 295
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=28.26 E-value=1.1e+02 Score=25.32 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.7
Q ss_pred CCHhHHHHHHHHHHHHHHhhh
Q 041911 505 INAQVRDEAMKVAGEWKKKMR 525 (624)
Q Consensus 505 ~~~~v~~~A~~lA~~Wk~~~~ 525 (624)
.+|.|...|+.|-..||..+.
T Consensus 54 ~~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 54 KNEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred CcHHHHHHHHHHHHHHHHHhc
Confidence 379999999999999998764
No 296
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.13 E-value=3e+02 Score=21.74 Aligned_cols=33 Identities=3% Similarity=0.199 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHH
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKENEL 127 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el 127 (624)
+..++..+..+...+...+..+..++.....+.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 297
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.72 E-value=3.5e+02 Score=22.33 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~ 222 (624)
+|+++...-+.++.+...++...+.+..+-+.+.....
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333
No 298
>TIGR02895 spore_sigI RNA polymerase sigma-I factor. Members of this sigma factor protein family are strictly limited to endospore-forming species in the Firmicutes lineage of bacteria, but are not universally present among such species. Sigma-I was shown to be induced by heat shock (PubMed:11157964) in Bacillus subtilis and is suggested by its phylogenetic profile to be connected to the program of sporulation (PubMed:16311624).
Probab=27.34 E-value=4.3e+02 Score=26.60 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=76.5
Q ss_pred HHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhhcCC--CCCHhHHHHHHHHHHHHHHhhhhhc--cChHHHHHHHH
Q 041911 464 LHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLSTVAP--EINAQVRDEAMKVAGEWKKKMRVAV--ENSLEVLGFLH 539 (624)
Q Consensus 464 Ld~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~~~p--~~~~~v~~~A~~lA~~Wk~~~~~~~--~~~~ea~~fL~ 539 (624)
..|++.|-|...... ..+-...++..++-.+.-..+-+. .++....+....+...|..-....+ ...-|..-|-.
T Consensus 50 ~eAi~~yd~~kg~~F-~sya~~~Ir~~i~dylRk~~k~~~~v~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~eEI~~~~~ 128 (218)
T TIGR02895 50 NEAIESYDSNKGKSF-LSFAKLIIKRRLIDYIRKNQKYQNLLYLDEDYDENPLEFNKSMEEYRNEIENENRRLEILEYKK 128 (218)
T ss_pred HHHHHHCCCCCCCCH-HHHHHHHHHHHHHHHHHhcccccCeeeCCchHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 567777644221101 233334455555555554432111 2333444445555555654333222 23469999999
Q ss_pred HHHHhcCCCCCChHHHHHHHHHhhhccchHHHHhhhCCC-CCchhHHH-----------------------hhhcCCchh
Q 041911 540 LLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFG-DKVPGLQC-----------------------SITAEGRSS 595 (624)
Q Consensus 540 lla~ygl~s~fd~~el~~l~~~v~~~~~~~~L~~~lgl~-~k~~~~v~-----------------------li~~g~~i~ 595 (624)
.|.-|||. +-+|+..++.|+.+-.+|-.+... -.=|++.+ +=.+.+||-
T Consensus 129 ~L~~~gi~-------~~dLv~~sPkh~d~r~~~i~ia~~~~~~~~l~~~l~~kk~LP~k~l~~~~~v~rktier~rkyIi 201 (218)
T TIGR02895 129 LLKQFGIE-------FVELVKVSPKHRDTRKKAIKIAKVIVENEELLEYLIRKKKLPIKEIEERVRISRKTIERYRKYII 201 (218)
T ss_pred HHHHcCCc-------HHHHhhcCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCHHHHHHHcCCCHHHHHHhhHHHH
Confidence 99999996 567888888888766655443321 22233333 223567888
Q ss_pred HHHHHHHhcCCCCCCCcccchhhh
Q 041911 596 SSMLVGTSAPTNQPVPGPMNLPQY 619 (624)
Q Consensus 596 Av~~~~~f~l~~~f~p~~llk~y~ 619 (624)
||-+|+. + -.|.|++||
T Consensus 202 a~~li~~----~---~~~~l~~y~ 218 (218)
T TIGR02895 202 ALVIILS----G---DYTYLKEYI 218 (218)
T ss_pred HHHHHHc----C---CcHHHHhhC
Confidence 8888872 2 234566664
No 299
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.26 E-value=7.3e+02 Score=25.83 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 041911 241 ELELTQSSIKE 251 (624)
Q Consensus 241 el~~le~ql~e 251 (624)
+++++..++..
T Consensus 150 el~~l~~~~q~ 160 (258)
T PF15397_consen 150 ELASLSRKIQE 160 (258)
T ss_pred HHHHHHHHHHH
Confidence 33344333333
No 300
>PRK06771 hypothetical protein; Provisional
Probab=27.14 E-value=75 Score=27.68 Aligned_cols=35 Identities=11% Similarity=0.053 Sum_probs=27.8
Q ss_pred hHHHHhhhCCCCC---chhHHH-hhhcCCchhHHHHHHH
Q 041911 568 APKFCQTLGFGDK---VPGLQC-SITAEGRSSSSMLVGT 602 (624)
Q Consensus 568 ~~~L~~~lgl~~k---~~~~v~-li~~g~~i~Av~~~~~ 602 (624)
...++.-+|+.+- +|+=+- |+..|+.|+||+..+.
T Consensus 39 L~~I~~~~Gi~~~~~~~~~e~~~Li~~Gkki~AIK~~Re 77 (93)
T PRK06771 39 LQLITKEMGIVDREPPVNKELRQLMEEGQTVTAVKRVRE 77 (93)
T ss_pred HHHHHHHcCCCCCcccccHHHHHHHHcCCchHHHHHHHH
Confidence 4667888898877 445555 9999999999998764
No 301
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=27.07 E-value=7.1e+02 Score=25.64 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=32.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHH
Q 041911 62 NYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELHLKENELN 128 (624)
Q Consensus 62 ~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~ 128 (624)
-||+.+-+..-.++.++-.+.+.+...-..|..+..+....+..-.++...++-+..+..+++.-+.
T Consensus 85 ~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 85 LELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLD 151 (254)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655555544444444444444444444444444444443333333333333
No 302
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.50 E-value=7.6e+02 Score=25.81 Aligned_cols=61 Identities=20% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 250 KELSVKFHSEEEKLELLHRKVRLHE-------NEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 310 (624)
Q Consensus 250 ~el~~eL~~~e~eleq~~~ki~~~e-------kel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~k 310 (624)
+.+..++.....++++..+++..++ .+.+..+.+|...=..+-.....+.-.+.+++...+
T Consensus 193 ~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 193 ANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3333333333444444444444443 344444444444445555555555555555555443
No 303
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.45 E-value=8.2e+02 Score=26.20 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 288 RKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 288 ~~e~~~l~kEle~k~~ele~~~kel 312 (624)
..++..+..+.+..+.-++.....+
T Consensus 277 ~~~~~~L~re~~~a~~~y~~~l~r~ 301 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKAALTSL 301 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444443
No 304
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.43 E-value=1.2e+03 Score=27.89 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHH
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESL 134 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l 134 (624)
....+.......+.+...+.....+++.--.-+..++.|+
T Consensus 188 e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~Yv 227 (739)
T PF07111_consen 188 EAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYV 227 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555566666665
No 305
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.42 E-value=1.2e+03 Score=28.17 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.3
Q ss_pred HHHHHH
Q 041911 68 IRLLDQ 73 (624)
Q Consensus 68 l~~L~~ 73 (624)
|..++.
T Consensus 153 L~~iR~ 158 (782)
T PRK00409 153 LRGIRR 158 (782)
T ss_pred HHHHHH
Confidence 333333
No 306
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.42 E-value=9.4e+02 Score=26.87 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 041911 63 YVDVKIRLLDQRAKEIES 80 (624)
Q Consensus 63 Eie~kl~~L~~qa~~~e~ 80 (624)
.|+.++..|++.+.+++.
T Consensus 219 di~~kv~flerkv~eled 236 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELED 236 (502)
T ss_pred hHHHHHHHHHHHHHHhhc
Confidence 455666677766555443
No 307
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=26.31 E-value=1e+03 Score=27.33 Aligned_cols=62 Identities=8% Similarity=0.154 Sum_probs=39.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhHh
Q 041911 60 QSNYVDVKIRLLDQRAKEIESKEI--KLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCELH 121 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~e~~~~--e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Eie 121 (624)
...+++.+|+.....-..+..+.. +|..+..-+......+..++.-+.++=.-+.+++.++-
T Consensus 165 ~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP 228 (570)
T COG4477 165 AAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELP 228 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 677777777777775555554433 46666666666666666666666666666666665544
No 308
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=26.01 E-value=8.3e+02 Score=26.09 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=3.3
Q ss_pred HhHHHHHH
Q 041911 66 VKIRLLDQ 73 (624)
Q Consensus 66 ~kl~~L~~ 73 (624)
+.+..|+.
T Consensus 27 ~~~~sL~q 34 (310)
T PF09755_consen 27 KRIESLQQ 34 (310)
T ss_pred HHHHHHHH
Confidence 33444443
No 309
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.92 E-value=9.1e+02 Score=26.50 Aligned_cols=14 Identities=7% Similarity=-0.097 Sum_probs=6.8
Q ss_pred HHhHHHHhhhCCCh
Q 041911 446 LLQFFDTVKRARDP 459 (624)
Q Consensus 446 ~~e~~~Al~~a~dP 459 (624)
|..--.-|+.+||-
T Consensus 341 r~kAe~llrg~~dG 354 (464)
T KOG4637|consen 341 RDKAEELLRGKPDG 354 (464)
T ss_pred HHHHHHHhcCCCCC
Confidence 33334445556653
No 310
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=25.88 E-value=4.2e+02 Score=30.58 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 270 VRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNE 307 (624)
Q Consensus 270 i~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~ 307 (624)
|......+++.+..+..++-++..+..+++..+.++++
T Consensus 109 I~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~E 146 (907)
T KOG2264|consen 109 IEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEE 146 (907)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 33333333444444444444444444555555544443
No 311
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.51 E-value=1.2e+03 Score=27.98 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 276 EVESLEQKLDSMRKQQKKYFDDVELKKRELN 306 (624)
Q Consensus 276 el~~~~~el~~~~~e~~~l~kEle~k~~ele 306 (624)
.++..+-.|+..++++..|--.|.-...++.
T Consensus 509 ~~k~~q~kLe~sekEN~iL~itlrQrDaEi~ 539 (861)
T PF15254_consen 509 NVKSLQFKLEASEKENQILGITLRQRDAEIE 539 (861)
T ss_pred HHHHHhhhHHHHHhhhhHhhhHHHHHHHHHH
Confidence 3344444444555555555544444444443
No 312
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=24.89 E-value=7.5e+02 Score=28.68 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=6.4
Q ss_pred hhHHHHHhcCcCCC
Q 041911 460 ALLVLHAMSGFYPP 473 (624)
Q Consensus 460 a~lVLd~i~~f~~~ 473 (624)
+.|.++.+-+++.+
T Consensus 389 ~~~~~~g~~~~~~~ 402 (555)
T TIGR03545 389 GKLTVKGVLDLRQP 402 (555)
T ss_pred ceEEEeeEEecccC
Confidence 44444444444443
No 313
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=24.85 E-value=74 Score=26.41 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCChHHHHH
Q 041911 531 SLEVLGFLHLLAAYRLAPAFDGEELES 557 (624)
Q Consensus 531 ~~ea~~fL~lla~ygl~s~fd~~el~~ 557 (624)
.+..+.|+++|+-+||+-.+|.+|+..
T Consensus 45 g~s~~eF~~~L~~~gI~~~~~~eel~~ 71 (76)
T PF03683_consen 45 GMSRWEFLELLKERGIPINYDEEELEE 71 (76)
T ss_pred CCCHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 368899999999999999999999864
No 314
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.82 E-value=7.5e+02 Score=25.19 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 041911 196 KQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHEN 275 (624)
Q Consensus 196 lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ek 275 (624)
++..+...-..+.+.-..+........-+...+.+.+.++.....-+....+...-+..++.+...+++.+...+..+..
T Consensus 35 ~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lke 114 (246)
T KOG4657|consen 35 IQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKE 114 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 276 EVESLEQKLDSMRKQQKKYFDDVELKKRE 304 (624)
Q Consensus 276 el~~~~~el~~~~~e~~~l~kEle~k~~e 304 (624)
+.. .-+++-+.+.+....-++...++++
T Consensus 115 E~d-d~keiIs~kr~~~~Ka~e~~~kRkQ 142 (246)
T KOG4657|consen 115 EKD-DSKEIISQKRQALSKAKENAGKRKQ 142 (246)
T ss_pred Hhh-hHHHHHHHHHHHHHHHHHHHHHHHh
No 315
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=24.78 E-value=6.1e+02 Score=24.12 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 268 RKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 310 (624)
Q Consensus 268 ~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~k 310 (624)
+.+.+..+.|.....+|+.+-..+....+|+.-.-..++..++
T Consensus 84 kEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknk 126 (159)
T PF04949_consen 84 KEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNK 126 (159)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443333433333
No 316
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=24.05 E-value=1.4e+02 Score=24.62 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.7
Q ss_pred CCHhHHHHHHHHHHHHHHhh
Q 041911 505 INAQVRDEAMKVAGEWKKKM 524 (624)
Q Consensus 505 ~~~~v~~~A~~lA~~Wk~~~ 524 (624)
.+|.|+..|+.|-..||..+
T Consensus 56 ~~~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 56 SNEKIRKLAKALIKSWKKLV 75 (76)
T ss_pred CcHHHHHHHHHHHHHHHHhc
Confidence 35999999999999999865
No 317
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=23.73 E-value=7e+02 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 280 LEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 280 ~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
+...|+.+...+..|..++.....++...+.++.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666654
No 318
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.28 E-value=1.1e+03 Score=26.55 Aligned_cols=41 Identities=10% Similarity=0.201 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 182 VQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 182 le~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~ 222 (624)
+...|.+..+.+.....++-.+...-.+++.+++...+.++
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~ 427 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALN 427 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555444444444444444443
No 319
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.15 E-value=5.3e+02 Score=24.35 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041911 202 SIQTLIEDYEEVLRDKEKSYGEVKKSL 228 (624)
Q Consensus 202 ~l~~eieel~eele~kEe~l~~l~~~I 228 (624)
.+..+...+...+-.+..+++++...=
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~ 84 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTAN 84 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333445555555555555555554443
No 320
>KOG1793 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.06 E-value=1.3e+02 Score=32.87 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=47.6
Q ss_pred HHHHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhh-------------------cCCCCCHhHHHHHHHHHHHHHH
Q 041911 462 LVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLST-------------------VAPEINAQVRDEAMKVAGEWKK 522 (624)
Q Consensus 462 lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~-------------------~~p~~~~~v~~~A~~lA~~Wk~ 522 (624)
=||++|.+++-|-+ ++..+...+|.+...+|--|+. .+|..++.++.-|.+|-..|-.
T Consensus 212 gvL~~lk~WLePLP---D~SLPal~Ir~~ll~iL~dlpi~~~E~Lk~SGlGkvVmflsks~ket~~nkrlA~kLI~eWsR 288 (417)
T KOG1793|consen 212 GVLDSLKEWLEPLP---DGSLPALNIRKSLLDILNDLPIDKREHLKESGLGKVVMFLSKSPKETKENKRLANKLINEWSR 288 (417)
T ss_pred hHHHHHHHHhccCC---CCCCcchHHHHHHHHHHhcCCcchHHHHHhcCCCeEEEEEecCCccchHHHHHHHHHHHHhhc
Confidence 36999999887654 3345667799888888865542 3899999999999999999987
Q ss_pred hh
Q 041911 523 KM 524 (624)
Q Consensus 523 ~~ 524 (624)
-|
T Consensus 289 pI 290 (417)
T KOG1793|consen 289 PI 290 (417)
T ss_pred cc
Confidence 76
No 321
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.00 E-value=1.1e+03 Score=26.43 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHHHHHhhh
Q 041911 507 AQVRDEAMKVAGEWKKKMR 525 (624)
Q Consensus 507 ~~v~~~A~~lA~~Wk~~~~ 525 (624)
.+.-..-+.+..+|+.+.+
T Consensus 377 ~dl~k~~k~~~~~~kk~Ek 395 (438)
T COG4487 377 LDLEKEKKAIIRAWKKREK 395 (438)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455667788887763
No 322
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.54 E-value=1.1e+03 Score=26.18 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 50 FDLTKKSLEKQSNYVDVKIRLLDQR 74 (624)
Q Consensus 50 L~~te~nL~rl~~Eie~kl~~L~~q 74 (624)
+++++++-...+.-+.++|+.-.++
T Consensus 53 FekkNqksa~~i~~lqkkL~~y~~~ 77 (395)
T PF10267_consen 53 FEKKNQKSAQTIAQLQKKLEQYHKR 77 (395)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443
No 323
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.47 E-value=1.2e+03 Score=26.84 Aligned_cols=12 Identities=8% Similarity=0.218 Sum_probs=8.4
Q ss_pred HhhhhhhhhHhh
Q 041911 31 SQANSVLLFTVQ 42 (624)
Q Consensus 31 EEAAGI~~y~~r 42 (624)
+||+||+....+
T Consensus 174 dEc~ris~~~eQ 185 (654)
T KOG4809|consen 174 DECKRISFCSEQ 185 (654)
T ss_pred hHHHHHHHHHHH
Confidence 378888776655
No 324
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=22.32 E-value=6.6e+02 Score=29.78 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=76.3
Q ss_pred hHhHHHHHHHHHhhhhcCCCCCHhHHHHHHHHHHHHHHh-------hhhh-----------ccChHHHHHHHHHHHHhcC
Q 041911 485 SIIRRSCILLLEQLSTVAPEINAQVRDEAMKVAGEWKKK-------MRVA-----------VENSLEVLGFLHLLAAYRL 546 (624)
Q Consensus 485 ~~~r~~cilLLe~l~~~~p~~~~~v~~~A~~lA~~Wk~~-------~~~~-----------~~~~~ea~~fL~lla~ygl 546 (624)
....|.|.+|.-|.+-++++-..-+..-|-++-..+-.- |..+ ..+++=---|..+||..||
T Consensus 217 ~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i 296 (878)
T KOG2005|consen 217 HNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGI 296 (878)
T ss_pred hhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 357889999999987776544444554444443322211 0001 1234455578899999999
Q ss_pred CCCCCh-HHHHHHHHHhhhccchHHHHhhhCCC-CCchhHH-H--hhhcC----------CchhHHHHHHHh
Q 041911 547 APAFDG-EELESLLCIVAQHRQAPKFCQTLGFG-DKVPGLQ-C--SITAE----------GRSSSSMLVGTS 603 (624)
Q Consensus 547 ~s~fd~-~el~~l~~~v~~~~~~~~L~~~lgl~-~k~~~~v-~--li~~g----------~~i~Av~~~~~f 603 (624)
.-++++ +++-+++.+.--...--.|.|-|.+. .|+|+=| . |-++. +|-.|..|+-+|
T Consensus 297 ~~e~~~~e~l~di~sN~~Lse~f~~LarELeimepk~pedIyK~hl~~~r~~s~a~vdSarqnla~~fvNgF 368 (878)
T KOG2005|consen 297 YFELSEDEELQDILSNGKLSEHFLYLARELEIMEPKVPEDIYKSHLEDSRGGSGAGVDSARQNLAATFVNGF 368 (878)
T ss_pred ceecCcCHHHHHHHccccHHHHHHHHHHHhcccCCCChHHHHHHHHhccccccccCccHHHHHHHHHHHHHH
Confidence 999975 77777766555555566777777776 7888755 3 44443 677778887776
No 325
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.22 E-value=6.1e+02 Score=29.30 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=4.6
Q ss_pred hhCCChhh
Q 041911 454 KRARDPAL 461 (624)
Q Consensus 454 ~~a~dPa~ 461 (624)
..+.||++
T Consensus 366 e~~adp~~ 373 (907)
T KOG2264|consen 366 ELSADPSR 373 (907)
T ss_pred HhccCCcc
Confidence 45556665
No 326
>PF13514 AAA_27: AAA domain
Probab=22.03 E-value=1.6e+03 Score=28.15 Aligned_cols=9 Identities=22% Similarity=0.047 Sum_probs=4.5
Q ss_pred HHHHhhhCC
Q 041911 449 FFDTVKRAR 457 (624)
Q Consensus 449 ~~~Al~~a~ 457 (624)
.|+-|..|+
T Consensus 978 ~p~vl~~As 986 (1111)
T PF13514_consen 978 QPPVLARAS 986 (1111)
T ss_pred hHHHHHHHH
Confidence 455555543
No 327
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.82 E-value=5e+02 Score=26.78 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=16.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 195 YKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKS 227 (624)
Q Consensus 195 ~lq~e~e~l~~eieel~eele~kEe~l~~l~~~ 227 (624)
.++.++..+..++.++..-+..+|..|...+..
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444455555555555555555555555543
No 328
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=21.58 E-value=1e+03 Score=25.56 Aligned_cols=98 Identities=10% Similarity=0.193 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 202 SIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLE 281 (624)
Q Consensus 202 ~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~ 281 (624)
-....+++++.-+....+-......+++-....|...+.+.-++...-...-..+-.+..+-.-...++..+..+|..++
T Consensus 226 lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq~kiq~Le 305 (391)
T KOG1850|consen 226 LYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQKKIQRLE 305 (391)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555555555555444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041911 282 QKLDSMRKQQKKYFDDVE 299 (624)
Q Consensus 282 ~el~~~~~e~~~l~kEle 299 (624)
+=....+.+-..+.+-++
T Consensus 306 kLcRALq~ernel~~~~~ 323 (391)
T KOG1850|consen 306 KLCRALQTERNELNKKLE 323 (391)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 333333333333333333
No 329
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.22 E-value=1.1e+03 Score=26.80 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041911 189 REKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL 228 (624)
Q Consensus 189 ke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I 228 (624)
+-.++..+..++..+..+-+.+..+-+.+..+-..+...|
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3333333344444444333344344333333333333333
No 330
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.22 E-value=1.2e+03 Score=26.52 Aligned_cols=6 Identities=33% Similarity=0.373 Sum_probs=2.4
Q ss_pred HHHHHH
Q 041911 532 LEVLGF 537 (624)
Q Consensus 532 ~ea~~f 537 (624)
...+|=
T Consensus 367 ~~YL~t 372 (472)
T TIGR03752 367 PQYLGT 372 (472)
T ss_pred HHHHHH
Confidence 344443
No 331
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=21.10 E-value=7.2e+02 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=11.3
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhhh
Q 041911 502 APEINAQVRDEAMKVAGEWKKKMR 525 (624)
Q Consensus 502 ~p~~~~~v~~~A~~lA~~Wk~~~~ 525 (624)
.|.-+...-++-..++..|=..++
T Consensus 292 ~~e~s~~~~~~~~~~~~~i~~~Lg 315 (418)
T TIGR00414 292 KPEESAEELEEMTSDAEQILQELE 315 (418)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcC
Confidence 343334444444455555555544
No 332
>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=21.09 E-value=85 Score=30.29 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=46.2
Q ss_pred ccChHHHHHHHHH-------HHHhcCCCCCChHHHHHHHHHhhhccchHHHHhhhCCCCCc--------hhHHH-hhhcC
Q 041911 528 VENSLEVLGFLHL-------LAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKV--------PGLQC-SITAE 591 (624)
Q Consensus 528 ~~~~~ea~~fL~l-------la~ygl~s~fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~--------~~~v~-li~~g 591 (624)
.++||.||.+=-| -+.||+.+ .++.|.+-+..|||.+++ -+.++ .|+.|
T Consensus 11 KDSSLaA~iL~klgyev~LVTvnFGv~d---------------~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg 75 (198)
T COG2117 11 KDSSLAALILDKLGYEVELVTVNFGVLD---------------SWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDG 75 (198)
T ss_pred CchhHHHHHHHHhCCCcEEEEEEecccc---------------chhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcC
Confidence 3578888876555 34566654 356777888899999886 45678 99999
Q ss_pred CchhHHHHHHHhc
Q 041911 592 GRSSSSMLVGTSA 604 (624)
Q Consensus 592 ~~i~Av~~~~~f~ 604 (624)
.+-.||.++|.--
T Consensus 76 ~P~~aIq~iH~~a 88 (198)
T COG2117 76 YPRNAIQYIHEMA 88 (198)
T ss_pred CCchHHHHHHHHH
Confidence 9999999998643
No 333
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=21.08 E-value=1e+03 Score=25.40 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.1
Q ss_pred HHHHHhHHHHHH
Q 041911 62 NYVDVKIRLLDQ 73 (624)
Q Consensus 62 ~Eie~kl~~L~~ 73 (624)
..+......|+.
T Consensus 30 ~sL~qen~~Lk~ 41 (310)
T PF09755_consen 30 ESLQQENRVLKR 41 (310)
T ss_pred HHHHHHhHHHHH
Confidence 334444444444
No 334
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.96 E-value=8.3e+02 Score=24.26 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=24.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 60 QSNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKE 103 (624)
Q Consensus 60 l~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e 103 (624)
-+..++.+|..|.+.+..+-+..+++...-..+..+...|...+
T Consensus 12 ~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E 55 (216)
T cd07627 12 YLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLE 55 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777666655544444444444444444444433
No 335
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=20.81 E-value=6.8e+02 Score=23.24 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 182 VQRSIEEREKQLAYKQRNISSIQTL 206 (624)
Q Consensus 182 le~~Ieeke~el~~lq~e~e~l~~e 206 (624)
+...+.+++..+...+.++..+...
T Consensus 82 a~~dv~nkq~~l~AA~~~l~~~~~e 106 (136)
T PF11570_consen 82 AQKDVQNKQNKLKAAQKELNAADEE 106 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444444444333333
No 336
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=20.74 E-value=7.9e+02 Score=23.91 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=21.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 39 FTVQWKDLEEHFDLTKKSLEKQSNYVDVKIRLLDQR 74 (624)
Q Consensus 39 y~~rk~eA~k~L~~te~nL~rl~~Eie~kl~~L~~q 74 (624)
+..=......+...+..+...=+..+-|++-.+-..
T Consensus 46 ~~~l~~~l~~~q~~ak~ha~~w~d~~~P~ii~~~~~ 81 (184)
T PF05791_consen 46 LSDLQKDLVQHQKTAKEHAKEWLDTIKPQIIDLNQD 81 (184)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 333344555666666666666667777777766653
No 337
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=20.53 E-value=9.7e+02 Score=24.90 Aligned_cols=26 Identities=4% Similarity=0.285 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 262 KLELLHRKVRLHENEVESLEQKLDSM 287 (624)
Q Consensus 262 eleq~~~ki~~~ekel~~~~~el~~~ 287 (624)
..+..+--|=-+..++++.++++...
T Consensus 272 dVEgmqsTiliLQq~Lketr~~Iq~l 297 (330)
T KOG2991|consen 272 DVEGMQSTILILQQKLKETRKEIQRL 297 (330)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444333333
No 338
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=20.48 E-value=7e+02 Score=23.45 Aligned_cols=67 Identities=21% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041911 207 IEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLH 273 (624)
Q Consensus 207 ieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ 273 (624)
++.+.......+..+.+....|......+......+..-.+.+.+++........+......++.|.
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~v 88 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPV 88 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
No 339
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.28 E-value=3.7e+02 Score=20.15 Aligned_cols=43 Identities=7% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 041911 181 EVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223 (624)
Q Consensus 181 ele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~ 223 (624)
.++...+-+...++.+..+++.+..+.+.+..++..+...++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 340
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.27 E-value=1.4e+03 Score=26.53 Aligned_cols=168 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 041911 78 IESKEIKLVFVEKKIE-DCNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSS-VEEWINKCQAYQ 155 (624)
Q Consensus 78 ~e~~~~e~~~~~~~le-e~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~e-l~e~~~eL~~~~ 155 (624)
++-+.+.|-.+...+. +++.-+..+......--.++..++.+++..++....+..+++.....-+. .+....-+....
T Consensus 568 ~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 568 TQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhh
Q 041911 156 KELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKL 235 (624)
Q Consensus 156 ~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~i 235 (624)
+.+-....--.+.+.++.-+-.+++.+...|+......+..+............-.=.+. +.+...++.-+......|
T Consensus 648 ~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~--~~Q~~~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 648 SELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILS--AYQRKCIQSILKELGEHI 725 (741)
T ss_pred ccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc--HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH
Q 041911 236 EREKKELELTQS 247 (624)
Q Consensus 236 e~~~~el~~le~ 247 (624)
.+........+.
T Consensus 726 ~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 726 REMVKQVKDIRN 737 (741)
T ss_pred HHHHHHHHHHHH
Done!