Query 041911
Match_columns 624
No_of_seqs 324 out of 907
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 20:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 98.7 3.6E-08 1.2E-12 119.9 11.6 31 48-78 864-897 (1184)
2 1i84_S Smooth muscle myosin he 98.6 1.2E-07 4.3E-12 115.3 11.5 159 95-256 862-1020(1184)
3 3na7_A HP0958; flagellar bioge 97.8 0.0034 1.1E-07 63.3 22.5 56 258-313 94-149 (256)
4 3na7_A HP0958; flagellar bioge 97.6 0.017 5.7E-07 58.2 23.6 6 301-306 144-149 (256)
5 2efr_A General control protein 97.1 0.18 6.2E-06 46.6 22.8 113 199-311 29-141 (155)
6 2v71_A Nuclear distribution pr 96.9 0.33 1.1E-05 46.3 23.6 89 214-302 90-181 (189)
7 2efr_A General control protein 96.7 0.36 1.2E-05 44.6 24.3 120 193-312 30-149 (155)
8 3o0z_A RHO-associated protein 96.6 0.45 1.5E-05 44.3 22.5 109 173-281 30-138 (168)
9 3vkg_A Dynein heavy chain, cyt 96.2 1.2 4E-05 59.0 28.7 72 240-311 2028-2099(3245)
10 3vkg_A Dynein heavy chain, cyt 96.1 3.3 0.00011 54.8 32.4 33 405-437 2368-2400(3245)
11 3o0z_A RHO-associated protein 95.7 1.4 4.6E-05 41.1 21.7 44 247-290 90-133 (168)
12 2dfs_A Myosin-5A; myosin-V, in 95.6 0.99 3.4E-05 54.2 23.1 7 36-42 849-855 (1080)
13 2v71_A Nuclear distribution pr 95.2 2.3 7.8E-05 40.5 22.6 56 174-229 99-154 (189)
14 3u1c_A Tropomyosin alpha-1 cha 95.1 0.81 2.8E-05 39.2 14.7 82 196-277 14-95 (101)
15 3u1c_A Tropomyosin alpha-1 cha 94.6 1.6 5.6E-05 37.3 15.3 26 248-273 73-98 (101)
16 3u59_A Tropomyosin beta chain; 94.4 1.6 5.4E-05 37.3 14.8 78 200-277 18-95 (101)
17 2dfs_A Myosin-5A; myosin-V, in 93.9 4.7 0.00016 48.4 22.8 19 237-255 1027-1045(1080)
18 2b9c_A Striated-muscle alpha t 92.3 2.6 9E-05 38.5 13.5 43 159-201 55-97 (147)
19 1ic2_A Tropomyosin alpha chain 89.9 4.6 0.00016 32.9 11.5 71 253-323 5-75 (81)
20 2fxo_A Myosin heavy chain, car 89.8 10 0.00035 33.6 18.4 49 262-310 70-118 (129)
21 1ic2_A Tropomyosin alpha chain 88.1 5.4 0.00018 32.5 10.7 10 241-250 56-65 (81)
22 2xzr_A Immunoglobulin-binding 84.8 16 0.00055 30.5 16.5 66 165-230 8-73 (114)
23 3ghg_A Fibrinogen alpha chain; 84.7 25 0.00087 38.1 16.3 22 545-566 485-508 (562)
24 2ocy_A RAB guanine nucleotide 83.7 26 0.0009 32.1 20.3 31 160-190 62-92 (154)
25 3ghg_A Fibrinogen alpha chain; 83.3 11 0.00038 40.9 12.9 30 194-223 127-156 (562)
26 3q8t_A Beclin-1; autophagy, AT 82.4 21 0.00072 30.0 13.9 33 245-277 58-90 (96)
27 3tnu_A Keratin, type I cytoske 82.3 11 0.00037 33.6 10.7 8 270-277 86-93 (131)
28 2v66_B Nuclear distribution pr 82.0 25 0.00084 30.5 16.0 43 239-281 62-104 (111)
29 3l4q_C Phosphatidylinositol 3- 81.4 34 0.0012 31.8 15.7 106 187-292 34-148 (170)
30 2e7s_A RAB guanine nucleotide 80.3 5.5 0.00019 35.7 7.8 34 158-191 48-81 (135)
31 4gkw_A Spindle assembly abnorm 80.0 31 0.0011 30.4 22.5 45 248-292 99-143 (167)
32 2jee_A YIIU; FTSZ, septum, coi 78.8 25 0.00086 28.6 11.4 22 203-224 53-74 (81)
33 3tnu_A Keratin, type I cytoske 76.5 40 0.0014 29.8 13.6 22 109-130 36-57 (131)
34 3qh9_A Liprin-beta-2; coiled-c 75.8 30 0.001 28.1 10.1 53 260-312 25-77 (81)
35 3ol1_A Vimentin; structural ge 75.7 40 0.0014 29.3 15.1 11 260-270 89-99 (119)
36 4gkw_A Spindle assembly abnorm 74.9 44 0.0015 29.5 22.7 57 61-120 13-69 (167)
37 3qh9_A Liprin-beta-2; coiled-c 73.4 33 0.0011 27.8 9.8 59 239-297 18-76 (81)
38 3hnw_A Uncharacterized protein 70.3 60 0.0021 29.0 16.4 43 185-227 83-125 (138)
39 3a7p_A Autophagy protein 16; c 69.8 60 0.0021 29.5 11.9 58 164-221 69-126 (152)
40 3a7p_A Autophagy protein 16; c 69.1 68 0.0023 29.2 13.0 12 284-295 119-130 (152)
41 2xzr_A Immunoglobulin-binding 68.1 52 0.0018 27.5 16.9 43 240-282 62-104 (114)
42 1deq_A Fibrinogen (alpha chain 67.9 1.2E+02 0.0041 31.6 16.3 10 241-250 177-186 (390)
43 3swk_A Vimentin; cytoskeleton, 66.8 52 0.0018 27.0 10.6 37 263-299 23-59 (86)
44 3trt_A Vimentin; cytoskeleton, 66.2 47 0.0016 26.3 9.7 18 57-74 7-24 (77)
45 3hhm_B NISH2 P85alpha; PI3KCA, 64.4 1.4E+02 0.0048 31.1 16.0 19 204-222 160-178 (373)
46 3cvf_A Homer-3, homer protein 61.3 56 0.0019 26.4 9.0 60 171-230 14-73 (79)
47 2i1j_A Moesin; FERM, coiled-co 52.2 23 0.00077 39.5 7.1 31 399-434 512-542 (575)
48 2v66_B Nuclear distribution pr 49.5 1.3E+02 0.0044 26.0 16.9 60 171-230 43-102 (111)
49 3cve_A Homer protein homolog 1 47.5 1E+02 0.0036 24.4 10.8 59 172-230 9-67 (72)
50 3s4r_A Vimentin; alpha-helix, 46.0 1.3E+02 0.0043 25.0 12.4 38 245-282 54-91 (93)
51 2rlw_A PLNF; toxin; NMR {Lacto 45.4 3.7 0.00013 26.7 -0.4 24 449-472 10-33 (34)
52 3c9i_A Tail needle protein GP2 37.7 2.7E+02 0.0093 26.4 11.7 74 194-267 73-146 (242)
53 4h22_A Leucine-rich repeat fli 37.7 1.9E+02 0.0064 24.5 9.6 24 188-211 55-78 (103)
54 1w1w_A Structural maintenance 36.8 7.3 0.00025 41.4 -0.0 41 11-55 154-194 (430)
55 2eqb_B RAB guanine nucleotide 33.7 2.1E+02 0.0072 24.0 14.2 14 121-134 43-56 (97)
56 2lw1_A ABC transporter ATP-bin 32.4 2E+02 0.0067 23.4 8.2 22 172-193 24-45 (89)
57 3efg_A Protein SLYX homolog; x 32.0 1.5E+02 0.0053 23.7 7.2 44 185-228 15-58 (78)
58 3l4q_C Phosphatidylinositol 3- 30.9 3.2E+02 0.011 25.2 16.3 55 257-311 92-146 (170)
59 2pms_C Pneumococcal surface pr 30.0 1.8E+02 0.0062 25.5 7.8 22 292-313 99-120 (125)
60 3cve_A Homer protein homolog 1 28.8 2.2E+02 0.0074 22.6 10.2 44 102-145 19-62 (72)
61 3iox_A AGI/II, PA; alpha helix 28.6 5.8E+02 0.02 27.5 15.0 36 278-313 69-104 (497)
62 1wt6_A Myotonin-protein kinase 27.3 2.5E+02 0.0085 22.7 9.7 26 282-307 45-70 (81)
63 2xnx_M M protein, M1-BC1; cell 25.5 2.6E+02 0.0089 25.1 8.1 12 292-303 118-129 (146)
64 2xpp_A IWS1, ECU08_0440; trans 25.3 97 0.0033 28.0 5.4 61 463-526 62-140 (145)
65 3jsv_C NF-kappa-B essential mo 25.2 3E+02 0.01 22.9 10.2 13 210-222 66-78 (94)
66 3mq7_A Bone marrow stromal ant 23.8 3.5E+02 0.012 23.3 12.9 82 147-231 30-111 (121)
67 3mkq_B Coatomer subunit alpha; 21.8 91 0.0031 29.1 4.7 69 531-606 62-131 (177)
68 1gmj_A ATPase inhibitor; coile 21.4 2.7E+02 0.0091 22.7 6.7 19 263-281 53-71 (84)
69 1go4_E MAD1 (mitotic arrest de 20.5 3.8E+02 0.013 22.5 8.3 67 161-227 10-97 (100)
70 3a7o_A Autophagy protein 16; c 20.1 3.2E+02 0.011 21.5 7.9 46 247-292 18-63 (75)
71 2p6v_A Transcription initiatio 20.0 32 0.0011 29.6 1.0 57 558-622 29-86 (114)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.70 E-value=3.6e-08 Score=119.94 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHH
Q 041911 48 EHFDLTKKSLEK---QSNYVDVKIRLLDQRAKEI 78 (624)
Q Consensus 48 k~L~~te~nL~r---l~~Eie~kl~~L~~qa~~~ 78 (624)
+.+..++.++.+ .+.+++.++.+|+.+...+
T Consensus 864 ~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555554 5556666666666554444
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.58 E-value=1.2e-07 Score=115.25 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 041911 95 CNGELECKEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVEEWINKCQAYQKELQLLKNLIKECCDEIEL 174 (624)
Q Consensus 95 ~~~~Le~~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~e~~~eL~~~~~~l~~~~~~ieE~~kele~ 174 (624)
+..++..++.++..+.+.+.+++..+..++.++..+...+......+.... ..+..+..+...+...+.+...+++.
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e---~~l~~l~~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE---EMRVRLAAKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444332222222221 22222223333333444444444444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHH
Q 041911 175 REKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSV 254 (624)
Q Consensus 175 lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~ 254 (624)
....+..+...+...+.++..++.++..+...+..+..++...+..+..+...+......+.....+...++.++.++..
T Consensus 939 ~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~el~~lee~l~~l~~e~~~le~~i~~l~~ 1018 (1184)
T 1i84_S 939 EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018 (1184)
T ss_dssp HHHC----------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444433333333333333333333333333333333
Q ss_pred hh
Q 041911 255 KF 256 (624)
Q Consensus 255 eL 256 (624)
.+
T Consensus 1019 ~l 1020 (1184)
T 1i84_S 1019 NL 1020 (1184)
T ss_dssp --
T ss_pred HH
Confidence 33
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.79 E-value=0.0034 Score=63.33 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 258 SEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 258 ~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
++..+++.+..++..++.++.+.+.++...+..+......+...+.++.....+++
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 149 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE 149 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444433
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.56 E-value=0.017 Score=58.21 Aligned_cols=6 Identities=0% Similarity=-0.064 Sum_probs=2.1
Q ss_pred HHHHHH
Q 041911 301 KKRELN 306 (624)
Q Consensus 301 k~~ele 306 (624)
.+.+++
T Consensus 144 ~~~~~~ 149 (256)
T 3na7_A 144 LESLVE 149 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 5
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=97.08 E-value=0.18 Score=46.62 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 041911 199 NISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVE 278 (624)
Q Consensus 199 e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~ 278 (624)
+++.+..+.......+..+++.+......+.+.+..-......-..|+.+++.+..+|+.+++..+.....+.-+++.+.
T Consensus 29 dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id 108 (155)
T 2efr_A 29 LLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444444444444334444555677888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 279 SLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 279 ~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
..+.++...+..+..+..+|+..-.++.++...
T Consensus 109 ~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~ 141 (155)
T 2efr_A 109 DLEDELYAQKLKYKAISEEMKQLEDKVEELLSK 141 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888777777777777766666555555544333
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.88 E-value=0.33 Score=46.27 Aligned_cols=89 Identities=7% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 041911 214 LRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ---KLDSMRKQ 290 (624)
Q Consensus 214 le~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~---el~~~~~e 290 (624)
+..++..+..+..........|-..+.....++.+.....+.+...+..+++...++..++.++.++.. .+...+.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE 169 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDE 169 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455666677777777778888888888888888888888875331 12233444
Q ss_pred HHHHHHHHHHHH
Q 041911 291 QKKYFDDVELKK 302 (624)
Q Consensus 291 ~~~l~kEle~k~ 302 (624)
+..+-.|+..++
T Consensus 170 ~rDLk~El~v~~ 181 (189)
T 2v71_A 170 ARDLRQELAVRE 181 (189)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHh
Confidence 555555554443
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=96.74 E-value=0.36 Score=44.64 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=56.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 041911 193 LAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRL 272 (624)
Q Consensus 193 l~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~ 272 (624)
+.......+.+...+.++..++......+.++...-.....+-......+..+..+++++..+...++.....+...|..
T Consensus 30 LEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~ 109 (155)
T 2efr_A 30 LERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 109 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444333333333334444444555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 273 HENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 273 ~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
++.++...+........++...+.++......+-.+..+|
T Consensus 110 lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 110 LEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 5555555555555555555555555555555555544444
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.62 E-value=0.45 Score=44.33 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=44.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH
Q 041911 173 ELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKEL 252 (624)
Q Consensus 173 e~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el 252 (624)
..+++...++...+...+....+++..+..+......+..++..+...+..-...-......+.+..+-+.++...++..
T Consensus 30 ~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~ 109 (168)
T 3o0z_A 30 VRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL 109 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444444433333333333322222222333333333334444444
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 253 SVKFHSEEEKLELLHRKVRLHENEVESLE 281 (624)
Q Consensus 253 ~~eL~~~e~eleq~~~ki~~~ekel~~~~ 281 (624)
...+..+..+-.++..+|.+++++.-+.+
T Consensus 110 k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 110 KHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444455555555444444444
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.16 E-value=1.2 Score=58.99 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 240 KELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 240 ~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
..+...+.+++++..+|..++.+++.+..+...++.+....+.++..+.+=+.+|-.|-..=...++.+...
T Consensus 2028 ~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~ 2099 (3245)
T 3vkg_A 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQ 2099 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555555555555555555555555444444444433
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.10 E-value=3.3 Score=54.84 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.1
Q ss_pred HHhhHHHHhHHHHHHHHhhhhhhHHHHHHHHHH
Q 041911 405 DRSQDLEVKEREFEERVKEFELREKEFDSIRKA 437 (624)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~ 437 (624)
.-+......-.....++.+.+..+.+++..++.
T Consensus 2368 ~~L~~sK~~s~eI~~kl~~a~~te~~I~~~R~~ 2400 (3245)
T 3vkg_A 2368 STLETLKKETTEIALKVEETETVMQEISEVSAL 2400 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666677777777777777776664
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.69 E-value=1.4 Score=41.12 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQ 290 (624)
Q Consensus 247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e 290 (624)
+.+.++..++.++..++++..........+......++-..+++
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333333333333333333
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.60 E-value=0.99 Score=54.23 Aligned_cols=7 Identities=14% Similarity=0.187 Sum_probs=2.7
Q ss_pred hhhhHhh
Q 041911 36 VLLFTVQ 42 (624)
Q Consensus 36 I~~y~~r 42 (624)
++.|..|
T Consensus 849 ~Rg~laR 855 (1080)
T 2dfs_A 849 LRGYLVR 855 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444333
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.16 E-value=2.3 Score=40.46 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 041911 174 LREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLV 229 (624)
Q Consensus 174 ~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~ 229 (624)
.+......+...|.+++..-+++....-.....+.++...+...-+++.=+..++.
T Consensus 99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~ 154 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444443
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.08 E-value=0.81 Score=39.19 Aligned_cols=82 Identities=11% Similarity=0.080 Sum_probs=35.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 041911 196 KQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHEN 275 (624)
Q Consensus 196 lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ek 275 (624)
++.+.+.+....+.+...+...+........+|.+...++.-...++..++.++.++...|...++......-.+..+.+
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444434444444433333344455555555555555544444444444444444444
Q ss_pred HH
Q 041911 276 EV 277 (624)
Q Consensus 276 el 277 (624)
+|
T Consensus 94 ri 95 (101)
T 3u1c_A 94 RI 95 (101)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.57 E-value=1.6 Score=37.25 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=10.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH
Q 041911 248 SIKELSVKFHSEEEKLELLHRKVRLH 273 (624)
Q Consensus 248 ql~el~~eL~~~e~eleq~~~ki~~~ 273 (624)
.+.+.......++.+...+..+|..+
T Consensus 73 kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 73 SLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444443
No 16
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.38 E-value=1.6 Score=37.32 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 041911 200 ISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEV 277 (624)
Q Consensus 200 ~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel 277 (624)
.+.+......+...+...+.........|.+...++.....++..+..++..+..+|...+.......-.+..+.++|
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRri 95 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRI 95 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333444444444444444444444444444444444444333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.87 E-value=4.7 Score=48.40 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 041911 237 REKKELELTQSSIKELSVK 255 (624)
Q Consensus 237 ~~~~el~~le~ql~el~~e 255 (624)
....+...++.++.++...
T Consensus 1027 ~L~~e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELNRR 1045 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444445555554433
No 18
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=92.25 E-value=2.6 Score=38.49 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 041911 159 QLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNIS 201 (624)
Q Consensus 159 ~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e 201 (624)
+.+..++.+...-.+.....+.++...+.-.+..+.......+
T Consensus 55 ~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae 97 (147)
T 2b9c_A 55 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAE 97 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 19
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=89.89 E-value=4.6 Score=32.92 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 041911 253 SVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIEELSQDLASKD 323 (624)
Q Consensus 253 ~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele~~~~el~sk~ 323 (624)
+.++..+..+.+....+...++.+++..+......+.++..+.+.+...+.+++..+..+......|+..+
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555555555444444444443333
No 20
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.80 E-value=10 Score=33.62 Aligned_cols=49 Identities=12% Similarity=0.224 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 262 KLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRK 310 (624)
Q Consensus 262 eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~k 310 (624)
.+..+...-..++..+.....++...+..+..+..+-...+.++..+.+
T Consensus 70 ~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 70 RCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444443333333333333
No 21
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.07 E-value=5.4 Score=32.50 Aligned_cols=10 Identities=40% Similarity=0.498 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 041911 241 ELELTQSSIK 250 (624)
Q Consensus 241 el~~le~ql~ 250 (624)
++..+++++.
T Consensus 56 eld~~ee~l~ 65 (81)
T 1ic2_A 56 ELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 22
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=84.84 E-value=16 Score=30.50 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 165 IKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 165 ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
+++....+-.+..+...+...+...+..+..-...+..-...|+.....+.....++...+..|..
T Consensus 8 ~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~E 73 (114)
T 2xzr_A 8 IEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINE 73 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHH
Confidence 333333333444444444334433333333333333333333334444444444444444444433
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.69 E-value=25 Score=38.14 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=0.0
Q ss_pred cCCCCCCh--HHHHHHHHHhhhcc
Q 041911 545 RLAPAFDG--EELESLLCIVAQHR 566 (624)
Q Consensus 545 gl~s~fd~--~el~~l~~~v~~~~ 566 (624)
|-..+|.. -+...||...+..+
T Consensus 485 g~ld~~~~rhpd~~~ff~~~stg~ 508 (562)
T 3ghg_A 485 GTLDGFRHRHPDEAAFFDTASTGK 508 (562)
T ss_dssp ------------------------
T ss_pred cchhhhhhhCcchHhhccccccCc
Confidence 55555533 44444555444433
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=83.73 E-value=26 Score=32.06 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=13.0
Q ss_pred HHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 041911 160 LLKNLIKECCDEIELREKKVGEVQRSIEERE 190 (624)
Q Consensus 160 ~~~~~ieE~~kele~lekeleele~~Ieeke 190 (624)
.+...+.+........+.....++.+++++.
T Consensus 62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 62 RLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.35 E-value=11 Score=40.88 Aligned_cols=30 Identities=13% Similarity=0.021 Sum_probs=15.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 041911 194 AYKQRNISSIQTLIEDYEEVLRDKEKSYGE 223 (624)
Q Consensus 194 ~~lq~e~e~l~~eieel~eele~kEe~l~~ 223 (624)
+..-..+..++..|+++..+|..+|--|..
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555443
No 26
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.37 E-value=21 Score=29.99 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEV 277 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel 277 (624)
|-.....+...+.....++..+...+.|....+
T Consensus 58 ~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qL 90 (96)
T 3q8t_A 58 YQREYSEFKRQQLELDDELKSVENQMRYAQMQL 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343344444444444444433333
No 27
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.27 E-value=11 Score=33.56 Aligned_cols=8 Identities=13% Similarity=0.252 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 041911 270 VRLHENEV 277 (624)
Q Consensus 270 i~~~ekel 277 (624)
|.+++.++
T Consensus 86 i~~lE~eL 93 (131)
T 3tnu_A 86 IGSVEEQL 93 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 28
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=81.96 E-value=25 Score=30.46 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLE 281 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~ 281 (624)
+..-..++.+.....+-|...+..+++.-.+...++.++.++.
T Consensus 62 Eq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe 104 (111)
T 2v66_B 62 EQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKE 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666677777777777777777777776543
No 29
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=81.43 E-value=34 Score=31.80 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HhhHHhhHHHHHHHHHHHHHHHHHHHhhh
Q 041911 187 EEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL---------VLCETKLEREKKELELTQSSIKELSVKFH 257 (624)
Q Consensus 187 eeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I---------~~~e~~ie~~~~el~~le~ql~el~~eL~ 257 (624)
+.+-..|.....++.-....++.+.+.+.--++++.....-- ......+.+...-..-+..++..+...-.
T Consensus 34 d~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~LksRL~~l~~sk~ 113 (170)
T 3l4q_C 34 DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRT 113 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455455555555555555555554333100 00111112222222334555666555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 258 SEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK 292 (624)
Q Consensus 258 ~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~ 292 (624)
.++..+.........+++++.+.+|++....+.-.
T Consensus 114 ~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD 148 (170)
T 3l4q_C 114 KLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRD 148 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 56666666666677777777777777666554443
No 30
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.30 E-value=5.5 Score=35.71 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=14.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 041911 158 LQLLKNLIKECCDEIELREKKVGEVQRSIEEREK 191 (624)
Q Consensus 158 l~~~~~~ieE~~kele~lekeleele~~Ieeke~ 191 (624)
+..+...+.+........+.....++.+++++..
T Consensus 48 ~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTa 81 (135)
T 2e7s_A 48 VKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 81 (135)
T ss_dssp HHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 31
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=80.02 E-value=31 Score=30.44 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 248 SIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK 292 (624)
Q Consensus 248 ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~ 292 (624)
.+.+++..|+...+=.+.+..-|+.+.++++...-.+...-..++
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE 143 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFE 143 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777777777777665544443333333
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.84 E-value=25 Score=28.65 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 041911 203 IQTLIEDYEEVLRDKEKSYGEV 224 (624)
Q Consensus 203 l~~eieel~eele~kEe~l~~l 224 (624)
+..+...+..+....++++.++
T Consensus 53 L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 53 LERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 33
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.51 E-value=40 Score=29.76 Aligned_cols=22 Identities=27% Similarity=0.177 Sum_probs=6.7
Q ss_pred HHcHhhhHHHhHhHHHHHHHHH
Q 041911 109 VQKXIGECNCELHLKENELNSL 130 (624)
Q Consensus 109 l~~~I~ele~Eie~le~el~~l 130 (624)
.+..|.++...+..+..+++.+
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l 57 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQ 57 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343333333333
No 34
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=75.80 E-value=30 Score=28.05 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 260 EEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYI 312 (624)
Q Consensus 260 e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kel 312 (624)
=.++..+..++.+++.+--..+..|++.+.++..+...|+.+..+++.++.++
T Consensus 25 ~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 25 LQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444445555555555555555666666666666666666666666555543
No 35
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.66 E-value=40 Score=29.34 Aligned_cols=11 Identities=36% Similarity=0.619 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 041911 260 EEKLELLHRKV 270 (624)
Q Consensus 260 e~eleq~~~ki 270 (624)
+++++.+..+|
T Consensus 89 E~~iesL~eEl 99 (119)
T 3ol1_A 89 ERKVESLQEEI 99 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 36
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=74.88 E-value=44 Score=29.48 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=23.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHhhhHHHhH
Q 041911 61 SNYVDVKIRLLDQRAKEIESKEIKLVFVEKKIEDCNGELECKEKELGLVQKXIGECNCEL 120 (624)
Q Consensus 61 ~~Eie~kl~~L~~qa~~~e~~~~e~~~~~~~lee~~~~Le~~e~~l~~l~~~I~ele~Ei 120 (624)
+.+++..+++|.++. +....++..+-..+.+-...+..++++-...+..|..+..+.
T Consensus 13 ia~L~~D~~s~~~el---eEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~ 69 (167)
T 4gkw_A 13 VADLKQDTESLQKQL---EENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAEL 69 (167)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Confidence 344555555555532 222233333344444444444444444433333333333333
No 37
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=73.44 E-value=33 Score=27.78 Aligned_cols=59 Identities=14% Similarity=0.249 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 239 KKELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDD 297 (624)
Q Consensus 239 ~~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kE 297 (624)
.....++-..+.+++-++..++.+.-|+..++.....++-.+...+.....++..+..+
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444556666666777777777777776666666555555555555555555444443
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=70.32 E-value=60 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKS 227 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~ 227 (624)
.+.++..++.++..++..++.+++....++..+.+.+..++..
T Consensus 83 ~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 83 DIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444433333333
No 39
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.83 E-value=60 Score=29.52 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q 041911 164 LIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSY 221 (624)
Q Consensus 164 ~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l 221 (624)
.|..+..++..+...+..++..+.++.+.+..++.++.+++-+...++..+..++.+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN 126 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEH 126 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555555444444444444433
No 40
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.06 E-value=68 Score=29.17 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 041911 284 LDSMRKQQKKYF 295 (624)
Q Consensus 284 l~~~~~e~~~l~ 295 (624)
+...+.++..++
T Consensus 119 l~kLq~EN~~LV 130 (152)
T 3a7p_A 119 LSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 41
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=68.09 E-value=52 Score=27.46 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 240 KELELTQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ 282 (624)
Q Consensus 240 ~el~~le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~ 282 (624)
.-+.+-+.|+.+--.++..++.+...+.-++=|++.++-+.++
T Consensus 62 aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 62 ARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444555666666666666666666666666676666655543
No 42
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.95 E-value=1.2e+02 Score=31.61 Aligned_cols=10 Identities=30% Similarity=0.278 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 041911 241 ELELTQSSIK 250 (624)
Q Consensus 241 el~~le~ql~ 250 (624)
.++.|+.+.+
T Consensus 177 D~e~ye~qqK 186 (390)
T 1deq_A 177 DLEDYKNQQK 186 (390)
T ss_pred cHHHHHHHHH
Confidence 3444443333
No 43
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=66.83 E-value=52 Score=26.97 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 263 LELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVE 299 (624)
Q Consensus 263 leq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle 299 (624)
++.+..-+.....+.+.....-..++.++.++-+.++
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333333333333333333344444444433333
No 44
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=66.24 E-value=47 Score=26.26 Aligned_cols=18 Identities=6% Similarity=-0.023 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 041911 57 LEKQSNYVDVKIRLLDQR 74 (624)
Q Consensus 57 L~rl~~Eie~kl~~L~~q 74 (624)
|..++.+|..+++.+-..
T Consensus 7 L~~il~eiRaQYE~ia~k 24 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAK 24 (77)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445778888888877654
No 45
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=64.43 E-value=1.4e+02 Score=31.13 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 041911 204 QTLIEDYEEVLRDKEKSYG 222 (624)
Q Consensus 204 ~~eieel~eele~kEe~l~ 222 (624)
...++.+.+.+..-++++.
T Consensus 160 ~~a~~af~~~~~~f~~q~~ 178 (373)
T 3hhm_B 160 RTAIEAFNETIKIFEEQCQ 178 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443
No 46
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=61.31 E-value=56 Score=26.44 Aligned_cols=60 Identities=12% Similarity=0.166 Sum_probs=29.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 171 EIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 171 ele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
++...+.+=..++.++...+..++..+.+...++.++..+..-+..+--.+..+..+++.
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333334444445555555555555555555555555544444444444455555444
No 47
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.23 E-value=23 Score=39.47 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=17.7
Q ss_pred hhhhHHHHhhHHHHhHHHHHHHHhhhhhhHHHHHHH
Q 041911 399 LKKGLEDRSQDLEVKEREFEERVKEFELREKEFDSI 434 (624)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~ 434 (624)
+++++..|++.|.++--.. -.+.+...++.+
T Consensus 512 kn~~lq~qL~~L~~el~~~-----r~~~k~t~~D~l 542 (575)
T 2i1j_A 512 RNERLHNQLKALKQDLARS-----CDETKETAMDKI 542 (575)
T ss_dssp HCHHHHHHHHHHHHHHHTT-----BCGGGCCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH-----hhhhhcchhHHH
Confidence 5677778888776654332 134445555544
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.46 E-value=1.3e+02 Score=25.96 Aligned_cols=60 Identities=13% Similarity=0.147 Sum_probs=27.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 171 EIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 171 ele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
++..+...-..+...|.+++..-+++....-.....++++...+...-++..-+..+|..
T Consensus 43 El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 43 DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444445555555555544444444444443
No 49
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=47.53 E-value=1e+02 Score=24.41 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 041911 172 IELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVL 230 (624)
Q Consensus 172 le~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~ 230 (624)
+...+.+=..++.++...+..++..+.+...++.++..+..-+..+=-.+..+..+++.
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak 67 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAK 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33333333344444555555555555555555555555544444444444444444443
No 50
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.01 E-value=1.3e+02 Score=24.96 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQ 282 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~ 282 (624)
|+..+.++...+..+..+-.++...+.++...+...+.
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555555555555555554443
No 51
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=45.35 E-value=3.7 Score=26.67 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=19.4
Q ss_pred HHHHhhhCCChhhHHHHHhcCcCC
Q 041911 449 FFDTVKRARDPALLVLHAMSGFYP 472 (624)
Q Consensus 449 ~~~Al~~a~dPa~lVLd~i~~f~~ 472 (624)
+....+.|.-||..|+.|+.||+.
T Consensus 10 vrnnyksavgpadwvisavrgfih 33 (34)
T 2rlw_A 10 VRNNYKSAVGPADWVISAVRGFIH 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhccccccChHHHHHHHHHhhcc
Confidence 344567788899999999999974
No 52
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=37.75 E-value=2.7e+02 Score=26.43 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 041911 194 AYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSLVLCETKLEREKKELELTQSSIKELSVKFHSEEEKLELLH 267 (624)
Q Consensus 194 ~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I~~~e~~ie~~~~el~~le~ql~el~~eL~~~e~eleq~~ 267 (624)
++..-.+..-..+|...+.++...+.+|......|...+-++...++.+..+..++..+..++...++.+..+.
T Consensus 73 DEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 73 DEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
No 53
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.71 E-value=1.9e+02 Score=24.53 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 041911 188 EREKQLAYKQRNISSIQTLIEDYE 211 (624)
Q Consensus 188 eke~el~~lq~e~e~l~~eieel~ 211 (624)
++..+++.+......++..+..+.
T Consensus 55 eK~re~e~~Kr~~~~L~~~~~~lk 78 (103)
T 4h22_A 55 EKNKEFEREKHAHSILQFQFAEVK 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 54
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=36.76 E-value=7.3 Score=41.42 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=13.4
Q ss_pred hhhhhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHH
Q 041911 11 ELRVAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKK 55 (624)
Q Consensus 11 ~~~~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~ 55 (624)
...++..+|...| .+|++++|+..|......+..++.+...
T Consensus 154 ~~~l~~~~p~eRr----~~ld~~~g~~~~~~~~~~~~~~~~~~~~ 194 (430)
T 1w1w_A 154 VEQIAAQSPVELS----RMFEEVSGSIQYKKEYEELKEKIEKLSK 194 (430)
T ss_dssp TTHHHHSCHHHHH----HTC-------------------------
T ss_pred HHHHHhCCHHHHH----HHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 4677888999999 8899999999999998887776655433
No 55
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.71 E-value=2.1e+02 Score=23.97 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=5.1
Q ss_pred hHHHHHHHHHHHHH
Q 041911 121 HLKENELNSLSESL 134 (624)
Q Consensus 121 e~le~el~~le~~l 134 (624)
...+.....+...+
T Consensus 43 ~~aE~~~~~ie~El 56 (97)
T 2eqb_B 43 TKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 56
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.40 E-value=2e+02 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=9.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 041911 172 IELREKKVGEVQRSIEEREKQL 193 (624)
Q Consensus 172 le~lekeleele~~Ieeke~el 193 (624)
++.+...|..++..|..++..+
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=32.04 E-value=1.5e+02 Score=23.68 Aligned_cols=44 Identities=11% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 041911 185 SIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKKSL 228 (624)
Q Consensus 185 ~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~~I 228 (624)
+|.+++-.+.....-++.++..+..+...|..+..++..+...+
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443333
No 58
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.87 E-value=3.2e+02 Score=25.21 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 257 HSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKY 311 (624)
Q Consensus 257 ~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~~l~kEle~k~~ele~~~ke 311 (624)
..+....+.+.-+++.+...-..+...|......+..+.+++.+.+-++-.+.+.
T Consensus 92 ~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~ 146 (170)
T 3l4q_C 92 QRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146 (170)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3344455555555555555555555555555555555666666555555555444
No 59
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=30.02 E-value=1.8e+02 Score=25.51 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 041911 292 KKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 292 ~~l~kEle~k~~ele~~~kele 313 (624)
.++.+.+..++.+++..++.+.
T Consensus 99 e~le~~la~KkAEleKtqa~Ld 120 (125)
T 2pms_C 99 EGLEKTIAAKKAELEKTEADLK 120 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777765
No 60
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.77 E-value=2.2e+02 Score=22.56 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=23.5
Q ss_pred HHHHHHHHHcHhhhHHHhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 102 KEKELGLVQKXIGECNCELHLKENELNSLSESLNIKKEELSSVE 145 (624)
Q Consensus 102 ~e~~l~~l~~~I~ele~Eie~le~el~~le~~l~~k~~eL~el~ 145 (624)
++.++..++..+.....+-..+..++..+-..++++..+|.++.
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444455555555555555566666666665555554443
No 61
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.56 E-value=5.8e+02 Score=27.47 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 278 ESLEQKLDSMRKQQKKYFDDVELKKRELNEIRKYIE 313 (624)
Q Consensus 278 ~~~~~el~~~~~e~~~l~kEle~k~~ele~~~kele 313 (624)
.....++.+.+++......++...+.++...++.+.
T Consensus 69 ~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 69 AKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555566666555555555543
No 62
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=27.28 E-value=2.5e+02 Score=22.73 Aligned_cols=26 Identities=8% Similarity=0.128 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 282 QKLDSMRKQQKKYFDDVELKKRELNE 307 (624)
Q Consensus 282 ~el~~~~~e~~~l~kEle~k~~ele~ 307 (624)
++|...+..+.++..+++.++.+++.
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444554444444443
No 63
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=25.54 E-value=2.6e+02 Score=25.11 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 041911 292 KKYFDDVELKKR 303 (624)
Q Consensus 292 ~~l~kEle~k~~ 303 (624)
.++..+|+.-+.
T Consensus 118 qgLrRDLeASRe 129 (146)
T 2xnx_M 118 QSLRRDLDASRE 129 (146)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 64
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=25.31 E-value=97 Score=27.96 Aligned_cols=61 Identities=20% Similarity=0.417 Sum_probs=43.2
Q ss_pred HHHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhh------------------cCCCCCHhHHHHHHHHHHHHHHhh
Q 041911 463 VLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLST------------------VAPEINAQVRDEAMKVAGEWKKKM 524 (624)
Q Consensus 463 VLd~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~------------------~~p~~~~~v~~~A~~lA~~Wk~~~ 524 (624)
||++|..++-|-+ ++..+...+|.+-.=+|..|+. -+|..+|+.|..|..|-..|..-|
T Consensus 62 iL~~l~~WL~PLp---DgsLP~~~Ir~~lL~~L~~lPI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li~~WsRpi 138 (145)
T 2xpp_A 62 ILDEIKGWLEPLP---DKSMPNIKIRKRLLDVLKTMKIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALVQKWTNEV 138 (145)
T ss_dssp HHHHHHHHHSCCT---TSCCCCHHHHHHHHHHHHTSCCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCC---CCCCCCHHHHHHHHHHHHHCCCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHHHHH
Confidence 4677777665543 2233445577766666666642 288999999999999999999877
Q ss_pred hh
Q 041911 525 RV 526 (624)
Q Consensus 525 ~~ 526 (624)
-+
T Consensus 139 ~~ 140 (145)
T 2xpp_A 139 FK 140 (145)
T ss_dssp TC
T ss_pred hC
Confidence 54
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=25.21 E-value=3e+02 Score=22.93 Aligned_cols=13 Identities=8% Similarity=-0.107 Sum_probs=4.6
Q ss_pred HHHHHHHHHHhHH
Q 041911 210 YEEVLRDKEKSYG 222 (624)
Q Consensus 210 l~eele~kEe~l~ 222 (624)
+..+.+.+...+.
T Consensus 66 l~~eKe~L~~ql~ 78 (94)
T 3jsv_C 66 LVEKKEYLQEQLE 78 (94)
T ss_dssp HHHTTSHHHHHHH
T ss_pred HHhHHHHHHHHHH
Confidence 3333333333333
No 66
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.76 E-value=3.5e+02 Score=23.33 Aligned_cols=82 Identities=7% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 041911 147 WINKCQAYQKELQLLKNLIKECCDEIELREKKVGEVQRSIEEREKQLAYKQRNISSIQTLIEDYEEVLRDKEKSYGEVKK 226 (624)
Q Consensus 147 ~~~eL~~~~~~l~~~~~~ieE~~kele~lekeleele~~Ieeke~el~~lq~e~e~l~~eieel~eele~kEe~l~~l~~ 226 (624)
+..+|..-+.-+.....+...+..-...+...+....... .+.+.+++.++..+...+.+..++++.+......+..
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhh
Q ss_pred HHHhh
Q 041911 227 SLVLC 231 (624)
Q Consensus 227 ~I~~~ 231 (624)
.|...
T Consensus 107 r~~~~ 111 (121)
T 3mq7_A 107 RIADK 111 (121)
T ss_dssp HHC--
T ss_pred Hhhhc
No 67
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.83 E-value=91 Score=29.09 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhhhccchHHHHhhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCC
Q 041911 531 SLEVLGFLHLLAAYRLAPAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPT 606 (624)
Q Consensus 531 ~~ea~~fL~lla~ygl~s~fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~ 606 (624)
.++-+.||+. +.| |.+-+.++......+.+..--|...-+...+..-|+ |++.|+.-+|+-||.++|+.
T Consensus 62 D~~~L~~Ly~--~tg-----~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~ 131 (177)
T 3mkq_B 62 SFDKLSFLYL--VTG-----DVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE 131 (177)
T ss_dssp CHHHHHHHHH--HHT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHH--HhC-----CHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcH
Confidence 3444444444 444 346666666555555555444555556677888899 99999999999999998873
No 68
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=21.39 E-value=2.7e+02 Score=22.73 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041911 263 LELLHRKVRLHENEVESLE 281 (624)
Q Consensus 263 leq~~~ki~~~ekel~~~~ 281 (624)
++.....|..+++.|.+..
T Consensus 53 l~~h~~ei~~le~~i~rhk 71 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHK 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333
No 69
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=20.54 E-value=3.8e+02 Score=22.51 Aligned_cols=67 Identities=7% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---------------------HHHhHHHHHHHHHHHHHHHHHHHH
Q 041911 161 LKNLIKECCDEIELREKKVGEVQRSIEEREKQLAY---------------------KQRNISSIQTLIEDYEEVLRDKEK 219 (624)
Q Consensus 161 ~~~~ieE~~kele~lekeleele~~Ieeke~el~~---------------------lq~e~e~l~~eieel~eele~kEe 219 (624)
....+..+..+++.++.+-..+...++.++..+.. ....+......++.++.+++.+..
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHH
Q 041911 220 SYGEVKKS 227 (624)
Q Consensus 220 ~l~~l~~~ 227 (624)
.+..+..|
T Consensus 90 ~v~~lEeg 97 (100)
T 1go4_E 90 LLRAMERG 97 (100)
T ss_dssp HHTTCC--
T ss_pred HHHHHhcc
No 70
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=20.14 E-value=3.2e+02 Score=21.46 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041911 247 SSIKELSVKFHSEEEKLELLHRKVRLHENEVESLEQKLDSMRKQQK 292 (624)
Q Consensus 247 ~ql~el~~eL~~~e~eleq~~~ki~~~ekel~~~~~el~~~~~e~~ 292 (624)
..++.++.+|.+.+.++.++...+....+..+++..++-+..=++.
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENN 63 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENN 63 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHH
Confidence 3566666666666666666666666666666666666655554443
No 71
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=20.05 E-value=32 Score=29.65 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHhhhccchHHHHhhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCCCCCCCcccchhhhhCC
Q 041911 558 LLCIVAQHRQAPKFCQTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGM 622 (624)
Q Consensus 558 l~~~v~~~~~~~~L~~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~f~p~~llk~y~~~~ 622 (624)
|+.......++|+ .+.+|.++|+ ||+.. |+|=.|....--.=+|||-|-|-+||+++
T Consensus 29 Li~las~~~~spe------v~~~Vr~LVq~Ll~~~--i~~EeFt~~Lq~~lns~pqP~LvPFLK~s 86 (114)
T 2p6v_A 29 LIXLASSGXQSTE------TAANVXELVQNLLDGX--IEAEDFTSRLYRELNSSPQPYLVPFLXRS 86 (114)
T ss_dssp HHHHHTSSSSCHH------HHHHHHHHHHHHHTTS--SCHHHHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred HHHHHhccccChH------HHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHcCCCCcchHHHHHhh
Confidence 3433444456666 3456778899 88765 66667777666666799999999999864
Done!