Query 041911
Match_columns 624
No_of_seqs 324 out of 907
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 20:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041911.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041911hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxka_ a.2.5.1 (A:) Prefoldin 64.3 31 0.0022 27.2 12.1 21 193-213 10-30 (107)
2 d1dvpa1 a.118.9.2 (A:1-145) Hr 51.6 29 0.0021 29.0 8.8 79 444-531 24-124 (145)
3 d1fxkc_ a.2.5.1 (C:) Prefoldin 51.5 57 0.0041 26.3 11.5 34 245-278 93-126 (133)
4 d1seta1 a.2.7.1 (A:1-110) Sery 43.0 63 0.0046 25.2 9.2 25 242-266 73-97 (110)
5 d1w1wa_ c.37.1.12 (A:) Smc hea 42.6 3.5 0.00026 40.3 1.2 57 14-74 156-215 (427)
6 d2p6va1 a.277.1.1 (A:582-678) 35.9 5.3 0.00039 31.6 1.0 57 558-622 21-78 (97)
7 d1b89a_ a.118.1.3 (A:) Clathri 23.2 45 0.0033 31.8 5.7 69 548-621 203-273 (336)
8 d1u61a_ a.149.1.1 (A:) Hypothe 15.0 45 0.0033 27.1 2.9 61 531-592 10-76 (127)
9 d1bg1a1 a.47.1.1 (A:136-321) S 14.9 3.3E+02 0.024 23.2 9.1 120 370-498 4-139 (186)
10 d1lrza1 a.2.7.4 (A:245-309) Me 14.2 2E+02 0.015 20.3 8.8 52 165-216 5-62 (65)
No 1
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=64.31 E-value=31 Score=27.21 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=7.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q 041911 193 LAYKQRNISSIQTLIEDYEEV 213 (624)
Q Consensus 193 l~~lq~e~e~l~~eieel~ee 213 (624)
|..++.++..+...+..+...
T Consensus 10 ~q~lq~el~~~~~q~~~le~q 30 (107)
T d1fxka_ 10 FQQLQQQAQAISVQKQTVEMQ 30 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 2
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=51.65 E-value=29 Score=28.97 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=56.0
Q ss_pred hhHHhHHHHhhhCCChhhHHHHHhcCcCCCCCCCCCccchhhHhHHHHHHHHHhhhh----------------------c
Q 041911 444 NLLLQFFDTVKRARDPALLVLHAMSGFYPPHSREGDLEFDVSIIRRSCILLLEQLST----------------------V 501 (624)
Q Consensus 444 ~l~~e~~~Al~~a~dPa~lVLd~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l~~----------------------~ 501 (624)
++-.+|...++..|++|+.++.+|..-+..+ + ..+...++.||+.++. +
T Consensus 24 ~~il~icD~I~~~~~~~k~a~ral~krl~~~--------n-~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~ 94 (145)
T d1dvpa1 24 PSILLICDEINQKDVTPKNAFAAIKKKMNSP--------N-PHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFL 94 (145)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHTCS--------S-HHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--------C-HHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHh
Confidence 4677888888888888999999988654211 1 1233356777777653 2
Q ss_pred CCCCCHhHHHHHHHHHHHHHHhhhhhccCh
Q 041911 502 APEINAQVRDEAMKVAGEWKKKMRVAVENS 531 (624)
Q Consensus 502 ~p~~~~~v~~~A~~lA~~Wk~~~~~~~~~~ 531 (624)
++..++.|++++..+-..|-.....+.+.+
T Consensus 95 ~~~~~~~Vk~kil~li~~W~~~f~~~~~~~ 124 (145)
T d1dvpa1 95 ESTPHENVRQKMLELVQTWAYAFRSSDKYQ 124 (145)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCccch
Confidence 445688999999999999999887654433
No 3
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=51.50 E-value=57 Score=26.28 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 041911 245 TQSSIKELSVKFHSEEEKLELLHRKVRLHENEVE 278 (624)
Q Consensus 245 le~ql~el~~eL~~~e~eleq~~~ki~~~ekel~ 278 (624)
+..+++.+...+..+.+.+..+...+..+...+.
T Consensus 93 l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~ 126 (133)
T d1fxkc_ 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333
No 4
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=43.01 E-value=63 Score=25.22 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Q 041911 242 LELTQSSIKELSVKFHSEEEKLELL 266 (624)
Q Consensus 242 l~~le~ql~el~~eL~~~e~eleq~ 266 (624)
...+..+++++..++..++.++...
T Consensus 73 ~k~lk~~i~~le~~~~~~~~~l~~~ 97 (110)
T d1seta1 73 GKALGEEAKRLEEALREKEARLEAL 97 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 5
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=42.64 E-value=3.5 Score=40.25 Aligned_cols=57 Identities=11% Similarity=0.240 Sum_probs=9.2
Q ss_pred hhccchHhhhhhHHHHHHhhhhhhhhHhhHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHH
Q 041911 14 VAESKKETLRRSFDMAHSQANSVLLFTVQWKDLEEHFDLTKKSLEK---QSNYVDVKIRLLDQR 74 (624)
Q Consensus 14 ~~~~k~~~~r~~~~~liEEAAGI~~y~~rk~eA~k~L~~te~nL~r---l~~Eie~kl~~L~~q 74 (624)
++..++...| .+++.++|+..|......+...++....++.+ ....+.+.+..+..+
T Consensus 156 ~~~~~~~~~~----~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~i~~e~~~~~~~ 215 (427)
T d1w1wa_ 156 IAAQSPVELS----RMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSP 215 (427)
T ss_dssp HHHSCHHHHH----HTC-----------------------------------------------
T ss_pred hhhccccccc----ccccccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 4556777777 88999999999999999999999999988887 444444444444443
No 6
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.88 E-value=5.3 Score=31.64 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHhhhccchHHHHhhhCCCCCchhHHH-hhhcCCchhHHHHHHHhcCCCCCCCcccchhhhhCC
Q 041911 558 LLCIVAQHRQAPKFCQTLGFGDKVPGLQC-SITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTGM 622 (624)
Q Consensus 558 l~~~v~~~~~~~~L~~~lgl~~k~~~~v~-li~~g~~i~Av~~~~~f~l~~~f~p~~llk~y~~~~ 622 (624)
|+...+...++|+ .+.+|..+|+ ||+.+ |++=.|....--.=+|||.|-|-+||+++
T Consensus 21 Li~l~s~~~~spe------~~~~Vr~LV~~L~~~~--i~~EEF~~~Lq~~lns~pqP~lvPFLK~s 78 (97)
T d2p6va1 21 LIKLASSGKQSTE------TAANVKELVQNLLDGK--IEAEDFTSRLYRELNSSPQPYLVPFLKRS 78 (97)
T ss_dssp HHHHHTSSSSCHH------HHHHHHHHHHHHHTTS--SCHHHHHHHHHHHTTCCCCTTHHHHHHHH
T ss_pred HHHHhcCCCCCch------HHHHHHHHHHHHHhCC--cCHHHHHHHHHHHhcCCCCchhHHHHHHh
Confidence 4444444556666 4456778899 88766 66667877777777799999999999864
No 7
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.21 E-value=45 Score=31.82 Aligned_cols=69 Identities=14% Similarity=0.071 Sum_probs=44.2
Q ss_pred CCCChHHHHHHHHHhhhccchHHHHhhhCCCCCchhHHH--hhhcCCchhHHHHHHHhcCCCCCCCcccchhhhhC
Q 041911 548 PAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQC--SITAEGRSSSSMLVGTSAPTNQPVPGPMNLPQYTG 621 (624)
Q Consensus 548 s~fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~v~--li~~g~~i~Av~~~~~f~l~~~f~p~~llk~y~~~ 621 (624)
..|+.+.....+..++--...|.+...+ |.. =|++|. |..=|..++..+++..|. +...+||+++|++.
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~y-L~~-~p~~i~~lL~~v~~~~d~~r~V~~~~---k~~~l~li~p~Le~ 273 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFY-LEF-KPLLLNDLLMVLSPRLDHTRAVNYFS---KVKQLPLVKPYLRS 273 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHH-HHH-CGGGHHHHHHHHGGGCCHHHHHHHHH---HTTCTTTTHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHH-HHc-CHHHHHHHHHHhccCCCHHHHHHHHH---hcCCcHHHHHHHHH
Confidence 4566666666666665444444443332 223 377776 556677788888888775 55678899999864
No 8
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=14.99 E-value=45 Score=27.13 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHHHH--HHHHHHHhcCC---CCCChHHHHHHHHHhhhccchHHHHhhhCCCCCchhHHH-hhhcCC
Q 041911 531 SLEVLG--FLHLLAAYRLA---PAFDGEELESLLCIVAQHRQAPKFCQTLGFGDKVPGLQC-SITAEG 592 (624)
Q Consensus 531 ~~ea~~--fL~lla~ygl~---s~fd~~el~~l~~~v~~~~~~~~L~~~lgl~~k~~~~v~-li~~g~ 592 (624)
+|+.+| .|.++++.=|. + +++++|-++...+........+++.+||.+-+..--. .+.+|.
T Consensus 10 ~LefLGDAVl~l~v~~~L~~~~p-~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~Gr 76 (127)
T d1u61a_ 10 ALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGR 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-SCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCccHHHHHHHHHccHHHHHHHHHHhCcHHHhhhccccccccCC
No 9
>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.94 E-value=3.3e+02 Score=23.18 Aligned_cols=120 Identities=8% Similarity=0.074 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhHHHHhHH--HHHHHHhhhhhhHH-HHHHHHHHHHHhhHhhH
Q 041911 370 LVQHESNLVQTRTIGYLKEFKEKEKHFDSLKKGLEDRSQDLEVKER--EFEERVKEFELREK-EFDSIRKAVEDHSKNLL 446 (624)
Q Consensus 370 ~~~~~~~~~~~~~~~~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-q~~~~~~~~~~~~~~l~ 446 (624)
+++++++++-..+..++.+.+..-+.++.....|.-+.+.+.+... +..+...+.-..+. .+...++.+...+.++-
T Consensus 4 ~~q~ei~~~v~~l~~~~q~~e~~ik~Le~~Qe~f~f~yk~lq~~~~~~~~~~~~~~~~~q~~~~l~~~~~~L~~~R~~l~ 83 (186)
T d1bg1a1 4 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIV 83 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------CCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHhhhCCChhhHHHH-------------HhcCcCCCCCCCCCccchhhHhHHHHHHHHHhh
Q 041911 447 LQFFDTVKRARDPALLVLH-------------AMSGFYPPHSREGDLEFDVSIIRRSCILLLEQL 498 (624)
Q Consensus 447 ~e~~~Al~~a~dPa~lVLd-------------~i~~f~~~~~~~~~~~~~~~~~r~~cilLLe~l 498 (624)
..+...+....-.-.-+|| |+||++..+- ...-..|-.|.+++
T Consensus 84 ~k~~~~l~~l~~lq~~ll~~eL~~WKrrQQlA~iG~P~~~~L---------DqLQ~W~e~lAe~i 139 (186)
T d1bg1a1 84 SELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICL---------DRLENWITSLAESQ 139 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCCCCCC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccch---------HHHHHHHHHHHHHH
No 10
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=14.17 E-value=2e+02 Score=20.32 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 041911 165 IKECCDEIELREKKVGEVQRSIEE------REKQLAYKQRNISSIQTLIEDYEEVLRD 216 (624)
Q Consensus 165 ieE~~kele~lekeleele~~Iee------ke~el~~lq~e~e~l~~eieel~eele~ 216 (624)
+..+..+...+...+..+...|.. ...++..+...+++...+|.+...-+..
T Consensus 5 l~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~ki~Ea~~li~k 62 (65)
T d1lrza1 5 IKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEE 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!