Your job contains 1 sequence.
>041912
MLAKLPKTLKTLNLIPVKKQNLLLFTQIHSSSEYIDDDPPFSPKRQKPQNPRTQQNPPVP
SSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPK
EVDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWK
RAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLML
WRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTE
EVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQAMDSDPLIDPTNP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041912
(359 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 1255 7.6e-128 1
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 823 4.5e-82 1
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 565 2.2e-69 3
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 570 2.9e-68 2
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 103 1.2e-06 2
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 1255 (446.8 bits), Expect = 7.6e-128, P = 7.6e-128
Identities = 236/343 (68%), Positives = 272/343 (79%)
Query: 10 KTLNLIPVKKQNLLLFTQIHSSSEYIDD-DPPFSP--KRQKPQNPRTQQNPPVP--SS-- 62
++L L K L + + DD DPPFSP K KP + +Q SS
Sbjct: 6 RSLTLAKEPKDLFLFLCNLRARCVSTDDYDPPFSPLSKPTKPPKEKKKQKTKKQDQSSEL 65
Query: 63 -NTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKE 121
N K+P+ SDLPFDF+YSYSE NP +EPIGFREPKRFSPFGPGRLDRKWTGTTALA E
Sbjct: 66 VNDLKIPVISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALASPE 125
Query: 122 VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKR 181
+D+ ++ EER RVLG+ LTE+E+ EL+ERYRHSDC RQINLGK GVTHNM+DD+HNHWK+
Sbjct: 126 IDQSQWVEERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKK 185
Query: 182 AEAVRIKCLGVPTLDMDNVCFHLEEKSGGKXXXXXXXXXXXXXGRNYDPKDRPVIPLMLW 241
AEAVRIKCLGVPTLDMDN+CFHLEEKSGGK GRNYDPK RP+IPLMLW
Sbjct: 186 AEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLW 245
Query: 242 RPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEE 301
+P+ PIYP++VKNVADGL FEETKEMRNRGLHSP LMKLTRNGVYVNVV +VRE F+TEE
Sbjct: 246 KPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEE 305
Query: 302 VVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
+VRLDC+HVG +DCK+IGVKL+++VPCVPILFKDEQIILWRGK
Sbjct: 306 IVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGK 348
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 165/325 (50%), Positives = 214/325 (65%)
Query: 32 SEYIDDDPPFSPKRQKPQNPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPI 91
S ++P F+ K + P+ Q PP SS + SDLPFDF++SY+E+ V PI
Sbjct: 44 SSSASENPDFNQKNNNKKKPKPQYRPP--SSLEGVKTVHSDLPFDFRFSYTESCSNVRPI 101
Query: 92 GFREPKRFSPFGPGRLDRKWTGTTALA--PK--EVDRV---RFEEERNRVL----GDPLT 140
G REPK +SPFGP RLDR+WTG A A PK VD V + EE+R +V G LT
Sbjct: 102 GLREPK-YSPFGPDRLDREWTGVCAPAVNPKVESVDGVEDPKLEEKRRKVREKIQGASLT 160
Query: 141 EEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNV 200
E E LVE + + RQ+NLG+ G+THNML+D++NHWK AEAVR+KCLGVPTLDM NV
Sbjct: 161 EAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNV 220
Query: 201 CFHLEEKSGGKXXXXXXXXXXXXXGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLT 260
FHLE+K+ G+ GRNYDPK RP IPLMLW+P+ P+YP+++K DGL+
Sbjct: 221 IFHLEDKTFGQVVSKHSGTLVLYRGRNYDPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLS 280
Query: 261 FEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGV 320
+ETK MR +GL P L KL +NG Y ++V VR+AF E+VR+DC + D KKIG
Sbjct: 281 IDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGA 340
Query: 321 KLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPC+ + F EQ+++WRGK+
Sbjct: 341 KLRDLVPCILVTFDKEQVVIWRGKD 365
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 565 (203.9 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 107/226 (47%), Positives = 152/226 (67%)
Query: 131 RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCL 190
R VLG+PL E L++ + H + RQ+NLG+ G THNML+ +H+HWKR +++C
Sbjct: 195 REEVLGEPLKRWEKGMLIKPHMHDN--RQVNLGRDGFTHNMLELIHSHWKRRRVCKVRCK 252
Query: 191 GVPTLDMDNVCFHLEEKSGGKXXXXXXXXXXXXXGRNYDPKDRPVIPLMLWRPYAPIYPK 250
GVPT+DM+NVC LEEK+GG+ GRNY+ + RP PLMLW+P AP+YPK
Sbjct: 253 GVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRGRNYNYRTRPQYPLMLWKPAAPVYPK 312
Query: 251 VVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHV 310
+++ V +GLT EE E R +G P+ KL++NGVYV++V VR+AF+ +V++DC +
Sbjct: 313 LIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGL 372
Query: 311 GTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE--QAMDSDPLI 354
+D KKIG KL++LVPCV + F DEQI++WRG+E +PLI
Sbjct: 373 EPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPLI 418
Score = 121 (47.7 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL 117
PF+F++SYSE P V+P+G REP F PF P + R WTG L
Sbjct: 110 PFEFQFSYSET-PKVKPVGIREPA-FMPFAPPTMPRPWTGKAPL 151
Score = 48 (22.0 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 40 PFSPKRQKPQNPRTQQNPPVPSSNTN-KLP 68
P + R + N +T NP P SN KLP
Sbjct: 43 PSNRNRNQKTNHQTDTNPKKPQSNPALKLP 72
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 570 (205.7 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 105/220 (47%), Positives = 151/220 (68%)
Query: 126 RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAV 185
R+ + +LG+PLT+EE+ ELV + RQ+N+G+ G+THNML+++H+ WKR
Sbjct: 230 RYVYSKEEILGEPLTKEEVRELVTSCLKT--TRQLNMGRDGLTHNMLNNIHDLWKRRRVC 287
Query: 186 RIKCLGVPTLDMDNVCFHLEEKSGGKXXXXXXXXXXXXXGRNYDPKDRPVIPLMLWRPYA 245
+IKC GV T+DMDNVC LEEK GGK GRNY+ + RP PLMLW+P A
Sbjct: 288 KIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLFRGRNYNHRTRPRFPLMLWKPVA 347
Query: 246 PIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRL 305
P+YP++++ V +GLT +E MR +G P+ KL +NGVY ++V V+EAF+ E+VR+
Sbjct: 348 PVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRI 407
Query: 306 DCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
DC + +D +KIG KL+DLVPCV + F++EQI++WRG+E
Sbjct: 408 DCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGRE 447
Score = 141 (54.7 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 36/98 (36%), Positives = 49/98 (50%)
Query: 37 DDPPFSPKRQK--PQNP-RTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGF 93
D P PK + P +P + P V S + + PF+FKYSY+E P V+P+
Sbjct: 110 DSGPNRPKNKPRVPDSPPQLDAKPEVKLSEDGLTYVINGAPFEFKYSYTET-PKVKPLKL 168
Query: 94 REPKRFSPFGPGRLDRKWTGTTAL-----APKEVDRVR 126
REP ++PFGP + R WTG L P+E D R
Sbjct: 169 REPA-YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFR 205
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 103 (41.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 120 KEVDRVRFEEERNRVLGD-PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNH 178
KE + R +EE+ L + L E+ L R +++ +GK G+T +++ +H
Sbjct: 146 KETEMERKKEEKVPSLAELTLPPAELRRL--RTVGIRLTKKLKIGKAGITEGIVNGIHER 203
Query: 179 WKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKXXXXXXXXXXXXXGRNY 228
W+ E V+I C + ++M LE K+GG G NY
Sbjct: 204 WRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSGSKILLYRGVNY 253
Score = 90 (36.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 257 DGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCK 316
+G+T +E +R GL P + L R GV+ + + +K E+V++ C+
Sbjct: 577 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 636
Query: 317 KIGVKLR----DLVPCVPILFKDEQIILWRGK 344
K+ L ++ V ++ K II++RGK
Sbjct: 637 KVAEILEAESGGILVAVEMVSKGYAIIVYRGK 668
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.137 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 359 346 0.00098 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 5
No. of states in DFA: 606 (64 KB)
Total size of DFA: 247 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.70u 0.11s 30.81t Elapsed: 00:00:02
Total cpu time: 30.70u 0.11s 30.81t Elapsed: 00:00:02
Start: Sat May 11 11:08:42 2013 End: Sat May 11 11:08:44 2013