BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041912
(359 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224124340|ref|XP_002319307.1| predicted protein [Populus trichocarpa]
gi|222857683|gb|EEE95230.1| predicted protein [Populus trichocarpa]
Length = 354
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 262/343 (76%), Positives = 294/343 (85%), Gaps = 4/343 (1%)
Query: 10 KTLNLIPVKKQNLLLFTQIHSSSEYIDDDPPFS-PKRQKPQNPRTQQNPPVPSSNTNKLP 68
KTL P K + + H+ S+ DPPFS K+ KP+N + P P+ N KLP
Sbjct: 11 KTLTQNPKSKSLYVSYFLNHTLSQ-DQYDPPFSLTKKPKPKNTTEPKETPDPN-NHPKLP 68
Query: 69 LKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFE 128
+KSDL FDF+YSYSE+NPA+EPIG+REPKRFSPFGPGRLDRKWTGT A E D +
Sbjct: 69 VKSDLAFDFRYSYSESNPAIEPIGYREPKRFSPFGPGRLDRKWTGTAAPTQLETDMDKLM 128
Query: 129 EERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIK 188
EERNRVLGDPLTEEE+AELVERYRHSDC+RQINLGK GVTHNMLDD+HNHWKRAEAVRIK
Sbjct: 129 EERNRVLGDPLTEEEVAELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIK 188
Query: 189 CLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIY 248
CLGVPTLDMDNVCFHLE+KSGGK++YRNINILLLYRGRNYDP++RPVIPLMLW+PYAPIY
Sbjct: 189 CLGVPTLDMDNVCFHLEDKSGGKVVYRNINILLLYRGRNYDPENRPVIPLMLWKPYAPIY 248
Query: 249 PKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCS 308
PK+VKNVADGLTFEETKEMRNRGL+S PLMKLTRNGVYVNVV +VR+AF+TEEVVRLDC
Sbjct: 249 PKLVKNVADGLTFEETKEMRNRGLNSLPLMKLTRNGVYVNVVDRVRDAFETEEVVRLDCK 308
Query: 309 HVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE-QAMDS 350
HVG +DCKKIGVKL+DLVPCVPILFKDEQIILWRGK Q ++S
Sbjct: 309 HVGMSDCKKIGVKLKDLVPCVPILFKDEQIILWRGKRNQELES 351
>gi|15240416|ref|NP_200300.1| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75170294|sp|Q9FFU1.1|CAF2M_ARATH RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|9758269|dbj|BAB08768.1| unnamed protein product [Arabidopsis thaliana]
gi|332009170|gb|AED96553.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 358
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 243/346 (70%), Positives = 284/346 (82%), Gaps = 8/346 (2%)
Query: 10 KTLNLIPVKKQNLLLFTQIHSSSEYIDD-DPPFSP-------KRQKPQNPRTQQNPPVPS 61
++L L K L + + DD DPPFSP ++K + +Q+
Sbjct: 6 RSLTLAKEPKDLFLFLCNLRARCVSTDDYDPPFSPLSKPTKPPKEKKKQKTKKQDQSSEL 65
Query: 62 SNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKE 121
N K+P+ SDLPFDF+YSYSE NP +EPIGFREPKRFSPFGPGRLDRKWTGTTALA E
Sbjct: 66 VNDLKIPVISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALASPE 125
Query: 122 VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKR 181
+D+ ++ EER RVLG+ LTE+E+ EL+ERYRHSDC RQINLGK GVTHNM+DD+HNHWK+
Sbjct: 126 IDQSQWVEERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKK 185
Query: 182 AEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLW 241
AEAVRIKCLGVPTLDMDN+CFHLEEKSGGKI+YRNINIL+LYRGRNYDPK RP+IPLMLW
Sbjct: 186 AEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLW 245
Query: 242 RPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEE 301
+P+ PIYP++VKNVADGL FEETKEMRNRGLHSP LMKLTRNGVYVNVV +VRE F+TEE
Sbjct: 246 KPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEE 305
Query: 302 VVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQA 347
+VRLDC+HVG +DCK+IGVKL+++VPCVPILFKDEQIILWRGK
Sbjct: 306 IVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGKRTG 351
>gi|225461009|ref|XP_002278505.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Vitis
vinifera]
Length = 452
Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/284 (80%), Positives = 257/284 (90%)
Query: 61 SSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPK 120
S P KSDLPFDF+YSYSE NP+V PIGFREP RFSPFGP RLDRKWTGT A A +
Sbjct: 70 SKKGQTFPFKSDLPFDFRYSYSEANPSVHPIGFREPPRFSPFGPARLDRKWTGTAAPAEE 129
Query: 121 EVDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWK 180
VD E+R VLG+PL+E+EIAELVERYRHSDC+RQINLGK GVTHNMLDD+HNHWK
Sbjct: 130 VVDPAVVSEQRKAVLGEPLSEDEIAELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWK 189
Query: 181 RAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLML 240
RAEAVRIKCLGVPTLDM+NVCFHLE+K GGKIIYRNINI+LLYRGRNYDPK+RPV+PLML
Sbjct: 190 RAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINIILLYRGRNYDPKNRPVVPLML 249
Query: 241 WRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTE 300
W+PYAPIYPK+VK VADGLTFEETKEMRNRGL+ PP+MKLT+NGVYVNVV +VREAF++E
Sbjct: 250 WKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMKLTKNGVYVNVVERVREAFRSE 309
Query: 301 EVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
EVVRLDC+HVG++DCK+IGVKLRDLVPCVPILFKDEQIILW+GK
Sbjct: 310 EVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQIILWKGK 353
>gi|449468496|ref|XP_004151957.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
gi|449489970|ref|XP_004158472.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Cucumis
sativus]
Length = 358
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/319 (75%), Positives = 278/319 (87%), Gaps = 6/319 (1%)
Query: 38 DPPFSPKRQKPQNPRTQQNPPVPSSNTNK---LPLKSDLPFDFKYSYSENNPAVEPIGFR 94
DPPFSP + + + ++ +SN+N+ LPLKS LPFDF YSYSE NP V PIG+R
Sbjct: 40 DPPFSPVSKLQKAKKKKEKAHGGNSNSNENPTLPLKSYLPFDFFYSYSETNPLVSPIGYR 99
Query: 95 EPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRVLGDPLTEEEIAELVERYRHS 154
E +FSPFGPGRLDRKWTGT+A + EV+ EER R+LGDPL +EE+AELVE+YRHS
Sbjct: 100 ESPKFSPFGPGRLDRKWTGTSAPSAVEVNINEVLEERKRILGDPLLDEEVAELVEQYRHS 159
Query: 155 DCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIY 214
DC+RQINLGK GVTHNMLDD+HNHWKRAEAVRIKCLGVPTLDMDN+CFHLE+KSGGKIIY
Sbjct: 160 DCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKSGGKIIY 219
Query: 215 RNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHS 274
R+INILLLYRGRNYDPK+RP IPLMLW+PYAPIYPK+VKNVAD L+F+ETKEMR+RGL+S
Sbjct: 220 RHINILLLYRGRNYDPKNRPAIPLMLWKPYAPIYPKLVKNVADDLSFDETKEMRSRGLNS 279
Query: 275 PPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK 334
PPLMKLTRNGVYVNVV +VREAFK EEVVRLDC+HVG++DCK+IGVKLRDLVPCVPILFK
Sbjct: 280 PPLMKLTRNGVYVNVVDRVREAFKFEEVVRLDCTHVGSSDCKQIGVKLRDLVPCVPILFK 339
Query: 335 DEQIILWRGK---EQAMDS 350
+EQIILWRGK E+ M+S
Sbjct: 340 NEQIILWRGKKDHEEDMNS 358
>gi|297737420|emb|CBI26621.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/305 (77%), Positives = 265/305 (86%), Gaps = 6/305 (1%)
Query: 46 QKPQNPRTQQNPPV-----PSSNTNK-LPLKSDLPFDFKYSYSENNPAVEPIGFREPKRF 99
Q P P +PP P N + P KSDLPFDF+YSYSE NP+V PIGFREP RF
Sbjct: 30 QSPPLPDHIHDPPFSLTSNPKDNKGQTFPFKSDLPFDFRYSYSEANPSVHPIGFREPPRF 89
Query: 100 SPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQ 159
SPFGP RLDRKWTGT A A + VD E+R VLG+PL+E+EIAELVERYRHSDC+RQ
Sbjct: 90 SPFGPARLDRKWTGTAAPAEEVVDPAVVSEQRKAVLGEPLSEDEIAELVERYRHSDCSRQ 149
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI 219
INLGK GVTHNMLDD+HNHWKRAEAVRIKCLGVPTLDM+NVCFHLE+K GGKIIYRNINI
Sbjct: 150 INLGKGGVTHNMLDDIHNHWKRAEAVRIKCLGVPTLDMENVCFHLEDKCGGKIIYRNINI 209
Query: 220 LLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMK 279
+LLYRGRNYDPK+RPV+PLMLW+PYAPIYPK+VK VADGLTFEETKEMRNRGL+ PP+MK
Sbjct: 210 ILLYRGRNYDPKNRPVVPLMLWKPYAPIYPKLVKPVADGLTFEETKEMRNRGLNLPPVMK 269
Query: 280 LTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQII 339
LT+NGVYVNVV +VREAF++EEVVRLDC+HVG++DCK+IGVKLRDLVPCVPILFKDEQII
Sbjct: 270 LTKNGVYVNVVERVREAFRSEEVVRLDCTHVGSSDCKRIGVKLRDLVPCVPILFKDEQII 329
Query: 340 LWRGK 344
LW+GK
Sbjct: 330 LWKGK 334
>gi|297792957|ref|XP_002864363.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
gi|297310198|gb|EFH40622.1| hypothetical protein ARALYDRAFT_331830 [Arabidopsis lyrata subsp.
lyrata]
Length = 362
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 244/339 (71%), Positives = 286/339 (84%), Gaps = 3/339 (0%)
Query: 12 LNLIPVKKQNLLLFTQIHSSSEYIDD-DPPFSPKRQKPQNPRTQQNPPVPSSNTN--KLP 68
L L +K LL + + D+ DPPFSP + + P+ ++ ++ K+P
Sbjct: 9 LTLAKEQKDLFLLLCNLRARFVSTDNYDPPFSPLSKPTKPPKEKKKTKKKQDQSSELKIP 68
Query: 69 LKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFE 128
+ SDLPFDF+YSYSE NP +EPIGFREPKRFSPFGPGRLDRKWTGT+AL E+D+ ++
Sbjct: 69 MISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTSALVSPEIDQSQWV 128
Query: 129 EERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIK 188
EER RVLG+PLTEEE+ ELVERYRHSDC+RQINLGK GVTHNM+DD+HNHWK+AEAVRIK
Sbjct: 129 EERARVLGEPLTEEEVTELVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKKAEAVRIK 188
Query: 189 CLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIY 248
CLGVPTLDMDN+CFHLEEKSGGKI+YR+INIL+LYRGRNYDPK RP+IPLMLW+PY PIY
Sbjct: 189 CLGVPTLDMDNICFHLEEKSGGKIVYRHINILVLYRGRNYDPKSRPIIPLMLWKPYPPIY 248
Query: 249 PKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCS 308
P++VKNVADGLTFEETKEMRNRG+HSP LMKLTRNGVYVNVV +VRE F+TEE+VRLDC+
Sbjct: 249 PRLVKNVADGLTFEETKEMRNRGIHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDCT 308
Query: 309 HVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQA 347
HVG +DCK+IGVKL+DLVPCVPILFKDEQIILWRGK
Sbjct: 309 HVGMSDCKRIGVKLKDLVPCVPILFKDEQIILWRGKRNG 347
>gi|255563935|ref|XP_002522967.1| conserved hypothetical protein [Ricinus communis]
gi|223537779|gb|EEF39397.1| conserved hypothetical protein [Ricinus communis]
Length = 409
Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust.
Identities = 254/339 (74%), Positives = 286/339 (84%), Gaps = 6/339 (1%)
Query: 10 KTLNLIPVKKQ-NLLLFTQIHSSSEYIDDDPPFSPKRQKPQNPRTQQNPPVPSSNTNK-- 66
KTL P N + H+ SE + D PPF+ KP+ + N P + N NK
Sbjct: 54 KTLTKTPASYPFNYFTYFLSHTLSEDLYD-PPFT-LASKPKAKKAPTNQPGSNENPNKDP 111
Query: 67 -LPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRV 125
LPLKSDLPFDF+YSYSE++ A++PIG+REPKRFSPFGPGRLDRKWTG A EVD
Sbjct: 112 KLPLKSDLPFDFRYSYSESDSAIQPIGYREPKRFSPFGPGRLDRKWTGVAAPVQSEVDME 171
Query: 126 RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAV 185
EER RVLGDPLTEEE+ ELVERYRHSDC+RQINLGK GVTHNMLDD+HNHWK+AEAV
Sbjct: 172 IVMEERRRVLGDPLTEEEVEELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKKAEAV 231
Query: 186 RIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYA 245
RIKCLGVPTLDMDNVCFHLE+KSGGKIIYR+INILLLYRGRNYDPK+RPVIP+MLW+PYA
Sbjct: 232 RIKCLGVPTLDMDNVCFHLEDKSGGKIIYRHINILLLYRGRNYDPKNRPVIPIMLWKPYA 291
Query: 246 PIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRL 305
PI+PK+VKNVADGL+FEETKE+RNRGL+SP LMKLTRNGVYV VV +VREAF+TEEVVRL
Sbjct: 292 PIFPKLVKNVADGLSFEETKEIRNRGLNSPALMKLTRNGVYVYVVERVREAFQTEEVVRL 351
Query: 306 DCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
DC+HVG++DCKKIGVKLRDLVPCVPILFKDEQIILWRGK
Sbjct: 352 DCTHVGSSDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 390
>gi|356496030|ref|XP_003516873.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 358
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/335 (71%), Positives = 277/335 (82%), Gaps = 16/335 (4%)
Query: 32 SEYIDD---DPPFSPKRQ---KPQNPRTQQNPPVPSSNTN-------KLPLKSDLPFDFK 78
S +I D DPPFSP + K + ++ S N + KLP KS+LPFDF+
Sbjct: 22 SHFIPDHQYDPPFSPSPKPYYKSKKNHAEKKKKNNSENGDPNKNGAPKLPFKSNLPFDFR 81
Query: 79 YSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRVLGDP 138
YSYSE++P+V PI FRE +FSPFGPGR+DRKWTG +A E DR R EEERNR+LG+P
Sbjct: 82 YSYSESDPSVGPISFRESPKFSPFGPGRIDRKWTGVSAPVQGEPDRERVEEERNRILGEP 141
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
L+E E+AEL+ERYRHSDCARQINLGK GVTHNML D+HNHWK+AEAVRIKCLGVPTLDMD
Sbjct: 142 LSEVEVAELIERYRHSDCARQINLGKGGVTHNMLGDIHNHWKKAEAVRIKCLGVPTLDMD 201
Query: 199 NVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADG 258
NVCFHLE+KSGGK+IYRNINILLLYRGRNYD K+ PVIPLMLW+PYAPIYP++VKNV +G
Sbjct: 202 NVCFHLEDKSGGKVIYRNINILLLYRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEG 261
Query: 259 LTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKI 318
LT+EETKEMR GL+S PL+KLTRNGVYVNVV +VREAFKT+EVV+LDC HVGT+DCKKI
Sbjct: 262 LTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFKTQEVVKLDCIHVGTSDCKKI 321
Query: 319 GVKLRDLVPCVPILFKDEQIILWRG---KEQAMDS 350
GVKLRDLVPCVPILFKDEQIILWRG +EQ DS
Sbjct: 322 GVKLRDLVPCVPILFKDEQIILWRGNFKEEQPSDS 356
>gi|226530577|ref|NP_001147995.1| LOC100281604 [Zea mays]
gi|195615022|gb|ACG29341.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 217/277 (78%), Positives = 244/277 (88%), Gaps = 1/277 (0%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +P PIGFREP RFSPFGPGRLDR W GT A + D
Sbjct: 71 PAHSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAARVGD-DASGD 129
Query: 128 EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRI 187
E R VLG+PL+EEE+A LVE+YRHSDC+RQINLGK GVTHNMLDD+HNHWKRAEAVRI
Sbjct: 130 ERSREEVLGEPLSEEEVAALVEKYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRI 189
Query: 188 KCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPI 247
KCLGVPTLDMDN+CFHLE+K+GGK++ R+INI++LYRGRNYDP+ RP +PLMLW+P API
Sbjct: 190 KCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYRGRNYDPQKRPGVPLMLWKPLAPI 249
Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC 307
YPK+V+NVA+GLTFEETKE+RNRGL+SPPL KLTRNGVYVNVV KVREAFKT EVVRLDC
Sbjct: 250 YPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAFKTVEVVRLDC 309
Query: 308 SHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
+HVGT DCKKIGVKLRDLVPC+PILFKDEQIILWRGK
Sbjct: 310 THVGTTDCKKIGVKLRDLVPCIPILFKDEQIILWRGK 346
>gi|356530475|ref|XP_003533806.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like [Glycine
max]
Length = 388
Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/335 (71%), Positives = 276/335 (82%), Gaps = 16/335 (4%)
Query: 32 SEYIDD---DPPFSPKRQ---KPQNPRTQQNPPVPSSNTN-------KLPLKSDLPFDFK 78
S +I D DPPFSP + K + ++ S N + KLP KS+LPFDF+
Sbjct: 22 SHFIPDHQYDPPFSPSPKPYYKSKKNHAEKKKKNNSENGDPNKNGAPKLPFKSNLPFDFR 81
Query: 79 YSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRVLGDP 138
YSYSE++P+V PI FRE +FSPFGPGR+DRKWTG +A E DR R EEERNR+LG+P
Sbjct: 82 YSYSESDPSVGPISFRESPKFSPFGPGRIDRKWTGVSAPVQGEPDRERVEEERNRILGEP 141
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
L+E E+AEL+ERYRHSDCARQINLGK GVTHNML D+HNHWK+AE VRIKCLGVPTLDMD
Sbjct: 142 LSEVEVAELIERYRHSDCARQINLGKGGVTHNMLGDIHNHWKKAEVVRIKCLGVPTLDMD 201
Query: 199 NVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADG 258
NVCFHLE+KSGGK+IYRNINILLLYRGRNYD K+ PVIPLMLW+PYAPIYP++VKNV +G
Sbjct: 202 NVCFHLEDKSGGKVIYRNINILLLYRGRNYDTKNCPVIPLMLWKPYAPIYPRLVKNVIEG 261
Query: 259 LTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKI 318
LT+EETKEMR GL+S PL+KLTRNGVYVNVV +VREAFKT+EVV+LDC HVGT+DCKKI
Sbjct: 262 LTYEETKEMRKSGLNSDPLLKLTRNGVYVNVVERVREAFKTQEVVKLDCIHVGTSDCKKI 321
Query: 319 GVKLRDLVPCVPILFKDEQIILWRG---KEQAMDS 350
GVKLRDLVPCVPILFKDEQIILWRG +EQ DS
Sbjct: 322 GVKLRDLVPCVPILFKDEQIILWRGNFKEEQPSDS 356
>gi|143955290|sp|Q0J7J7.2|CAF2M_ORYSJ RecName: Full=CRS2-associated factor 2, mitochondrial; Flags:
Precursor
gi|222640037|gb|EEE68169.1| hypothetical protein OsJ_26288 [Oryza sativa Japonica Group]
Length = 366
Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/286 (77%), Positives = 248/286 (86%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +PA PIGFREP RFSPFGPGRLDR W G A A +
Sbjct: 74 PASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGAA 133
Query: 128 EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRI 187
R VLG+PL EEE+A+LVERYRHSDC+RQINLGK GVTHNM+DD+HNHWKRAEAVRI
Sbjct: 134 ATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRI 193
Query: 188 KCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPI 247
KCLGVPTLDMDN+CFHLE+K+GGK+IYRNINIL+LYRGRNYDPK RP IPLMLW+P API
Sbjct: 194 KCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLMLWKPLAPI 253
Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC 307
YP++V+NVADGLTFE+TKE+RN GL+S PLMKLTRNGVYVNVV +VREAFKT EVVRLDC
Sbjct: 254 YPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDC 313
Query: 308 SHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQAMDSDPL 353
SHVG++DCKKIGVKLRDLVPCVP+LFKDEQIILWRGK + +S L
Sbjct: 314 SHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENSVSL 359
>gi|115475115|ref|NP_001061154.1| Os08g0188000 [Oryza sativa Japonica Group]
gi|113623123|dbj|BAF23068.1| Os08g0188000, partial [Oryza sativa Japonica Group]
Length = 361
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/283 (77%), Positives = 247/283 (87%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +PA PIGFREP RFSPFGPGRLDR W G A A +
Sbjct: 69 PASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGAA 128
Query: 128 EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRI 187
R VLG+PL EEE+A+LVERYRHSDC+RQINLGK GVTHNM+DD+HNHWKRAEAVRI
Sbjct: 129 ATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRI 188
Query: 188 KCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPI 247
KCLGVPTLDMDN+CFHLE+K+GGK+IYRNINIL+LYRGRNYDPK RP IPLMLW+P API
Sbjct: 189 KCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLMLWKPLAPI 248
Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC 307
YP++V+NVADGLTFE+TKE+RN GL+S PLMKLTRNGVYVNVV +VREAFKT EVVRLDC
Sbjct: 249 YPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDC 308
Query: 308 SHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQAMDS 350
SHVG++DCKKIGVKLRDLVPCVP+LFKDEQIILWRGK + +S
Sbjct: 309 SHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENS 351
>gi|218200589|gb|EEC83016.1| hypothetical protein OsI_28075 [Oryza sativa Indica Group]
Length = 365
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 220/283 (77%), Positives = 247/283 (87%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +PA PIGFREP RFSPFGPGRLDR W G A A +
Sbjct: 73 PASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGAA 132
Query: 128 EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRI 187
R VLG+PL EEE+A+LVERYRHSDC+RQINLGK GVTHNM+DD+HNHWKRAEAVRI
Sbjct: 133 ATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRI 192
Query: 188 KCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPI 247
KCLGVPTLDMDN+CFHLE+K+GGK+IYRNINIL+LYRGRNYDPK RP IPLMLW+P API
Sbjct: 193 KCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLMLWKPLAPI 252
Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC 307
YP++V+NVADGLTFE+TKE+RN GL+S PLMKLTRNGVYVNVV +VREAFKT EVVRLDC
Sbjct: 253 YPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDC 312
Query: 308 SHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQAMDS 350
SHVG++DCKKIGVKLRDLVPCVP+LFKDEQIILWRGK + +S
Sbjct: 313 SHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENS 355
>gi|238014734|gb|ACR38402.1| unknown [Zea mays]
gi|413921148|gb|AFW61080.1| CRS2-associated factor 1 [Zea mays]
Length = 362
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/278 (78%), Positives = 245/278 (88%), Gaps = 3/278 (1%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +P PIGFREP RFSPFGPGRLDR W GT A + D
Sbjct: 71 PAHSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAA--RVGDYASG 128
Query: 128 EEE-RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVR 186
+E R VLG+PL+EEE+A LVERYRHSDC+RQINLGK GVTHNMLDD+HNHWKRAEAVR
Sbjct: 129 DERIREEVLGEPLSEEEVAALVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVR 188
Query: 187 IKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAP 246
IKCLGVPTLDMDN+CFHLE+K+GGK++ R+INI++LYRGRNYDP+ RP +PLMLW+P AP
Sbjct: 189 IKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYRGRNYDPQKRPGVPLMLWKPLAP 248
Query: 247 IYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLD 306
IYPK+V+NVA+GLTFEETKE+RNRGL+SPPL KLTRNGVYVNVV KVREAFKT EVVRLD
Sbjct: 249 IYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLTRNGVYVNVVDKVREAFKTVEVVRLD 308
Query: 307 CSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
C+HVGT DCKKIGVKLRDLVPC+PILFKDEQIILWRGK
Sbjct: 309 CTHVGTTDCKKIGVKLRDLVPCIPILFKDEQIILWRGK 346
>gi|357144748|ref|XP_003573400.1| PREDICTED: CRS2-associated factor 2, mitochondrial-like
[Brachypodium distachyon]
Length = 365
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/281 (77%), Positives = 245/281 (87%), Gaps = 4/281 (1%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPK----EVD 123
P SDLPFDF+YSYSE +PA PIGFREP RFSPFGPGRLDR W G A A +
Sbjct: 69 PAHSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGAAAAAARVYGDSEG 128
Query: 124 RVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAE 183
R +LG+ L+E E++ELVERYRHSDC+RQINLGK GVTHNMLDD+HNHWKRAE
Sbjct: 129 GDGGGTSREDLLGEALSEAEVSELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAE 188
Query: 184 AVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRP 243
AVRIKCLGV TLDMDN+CFHLE+K+GGKII+R+INIL+LYRGRNYDPK RPVIPLMLW+P
Sbjct: 189 AVRIKCLGVATLDMDNICFHLEDKTGGKIIHRSINILILYRGRNYDPKQRPVIPLMLWKP 248
Query: 244 YAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVV 303
APIYPK+V++VA+G+TFEETKE+RNRGL+SPPLMKLTRNGVYVNVV +VREAF+T EVV
Sbjct: 249 LAPIYPKLVQSVAEGMTFEETKELRNRGLNSPPLMKLTRNGVYVNVVDRVREAFQTVEVV 308
Query: 304 RLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
RLDC+HVGT+DCKKIGVKLRDLVPCVPILFKDEQIILWRGK
Sbjct: 309 RLDCTHVGTSDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 349
>gi|242080803|ref|XP_002445170.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
gi|241941520|gb|EES14665.1| hypothetical protein SORBIDRAFT_07g005220 [Sorghum bicolor]
Length = 353
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/283 (75%), Positives = 239/283 (84%), Gaps = 13/283 (4%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +PA PIGFREP RFSPFGPGRLDR W G A E D
Sbjct: 75 PAHSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGAAAARVGE-DASGD 133
Query: 128 EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRI 187
E R VLG+PL+EEE+A LVE+YRHSDC+RQINLGK GVTHNMLDD+HNHWKRAEAVRI
Sbjct: 134 ERSREEVLGEPLSEEEVAALVEKYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVRI 193
Query: 188 KCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPI 247
KCLGVPTLDMDN+CFHLE+K+GGK+IYR+INI++LYRGRNYDPK RP IPLMLW+P API
Sbjct: 194 KCLGVPTLDMDNICFHLEDKTGGKVIYRSINIIILYRGRNYDPKRRPGIPLMLWKPLAPI 253
Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFK------TEE 301
YPK+V+NVA+GLTFEETKE+RNRGL+SP L KLTRNGVYVNVV K T E
Sbjct: 254 YPKLVQNVAEGLTFEETKELRNRGLNSPALTKLTRNGVYVNVVDK------VREAFKTVE 307
Query: 302 VVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
VVRLDC+HVGT+DCKKIGVKLRDLVPC+PILFKDEQIILWRGK
Sbjct: 308 VVRLDCTHVGTSDCKKIGVKLRDLVPCIPILFKDEQIILWRGK 350
>gi|225453847|ref|XP_002272563.1| PREDICTED: CRS2-associated factor 1, mitochondrial [Vitis vinifera]
gi|296089125|emb|CBI38828.3| unnamed protein product [Vitis vinifera]
Length = 418
Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 182/317 (57%), Positives = 229/317 (72%), Gaps = 17/317 (5%)
Query: 40 PFSPKRQKPQNPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRF 99
P + K+QKP PP T K PL+SDLPFDF+YSY+E++PAV PIG REPK +
Sbjct: 60 PSTKKKQKPP-----YRPPSSLDRTGKKPLRSDLPFDFRYSYTESSPAVRPIGLREPK-Y 113
Query: 100 SPFGPGRLDRKWTGTTALA--PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELV 148
SPFGPG LDR+WTG A A PK VD + EE+R R+ LG+PLT E LV
Sbjct: 114 SPFGPGLLDREWTGVCAPAVDPKVRSVDGKEDPKLEEKRRRMREKTLGEPLTAAERKILV 173
Query: 149 ERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKS 208
E+ + RQINLG+ G+THNML+D+HNHWK AEAVRIKC+GVPT+DM NVC LE+K+
Sbjct: 174 EKCQRHRTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCMGVPTVDMKNVCTQLEDKT 233
Query: 209 GGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMR 268
GK+I+R +L+LYRGRNY PK RPVIPLMLWRP+ PIYP+++K V DGL+ EETKEMR
Sbjct: 234 SGKVIHRQGGLLVLYRGRNYHPKKRPVIPLMLWRPHEPIYPRLIKTVIDGLSIEETKEMR 293
Query: 269 NRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPC 328
RGL P L KL +NG Y ++V VR+AF T+E++R+DC + D KKIG KLRD VPC
Sbjct: 294 KRGLAVPALTKLAKNGYYGSLVPMVRDAFLTDELIRIDCQGLERRDYKKIGCKLRDFVPC 353
Query: 329 VPILFKDEQIILWRGKE 345
+ + F+ EQI++WRGK+
Sbjct: 354 ILVTFEKEQIVVWRGKD 370
>gi|317106625|dbj|BAJ53131.1| JHL05D22.2 [Jatropha curcas]
Length = 415
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 181/326 (55%), Positives = 227/326 (69%), Gaps = 20/326 (6%)
Query: 39 PPFSPKRQKPQNP----RTQQNP----PVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEP 90
PP S Q+P NP R +Q P P T K P SDLPFDF+YSY+E++ +V P
Sbjct: 44 PPPSLSPQEPDNPNPTTRKKQKPLYRPPSTLDRTGKKPTHSDLPFDFRYSYTESSQSVRP 103
Query: 91 IGFREPKRFSPFGPGRLDRKWTGTTALA--PK-----EVDRVRFEEERN----RVLGDPL 139
IG REPK +SPFGP RLDR WTG A A PK D EE+R ++ GDPL
Sbjct: 104 IGLREPK-YSPFGPDRLDRSWTGVCAPAVDPKVKSLDGTDDPNLEEKRKLMREKIQGDPL 162
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E LV + + + RQINLG+ G+THNML+D+HNHWK AEAVRIKCLGVPT+DM N
Sbjct: 163 TNAERKILVAQCQRNKTKRQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKN 222
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
VC LE+K+ GKII+R+ L+LYRGRNY+PK RPVIPLM+WRP+ PIYP+++K DGL
Sbjct: 223 VCSQLEDKTFGKIIHRHCGSLVLYRGRNYNPKKRPVIPLMMWRPHEPIYPRLIKTTIDGL 282
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
+ +ETKEMR RGL P L KL +NG Y ++V VR+AF T E+VR+DC + +D KKIG
Sbjct: 283 SIDETKEMRKRGLAVPALTKLAKNGYYASLVPMVRDAFLTNELVRIDCQGLEKSDYKKIG 342
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPC+ + F+ EQI++WRGK+
Sbjct: 343 CKLRDLVPCILVTFEKEQIVVWRGKD 368
>gi|224130086|ref|XP_002320749.1| predicted protein [Populus trichocarpa]
gi|222861522|gb|EEE99064.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/329 (53%), Positives = 226/329 (68%), Gaps = 23/329 (6%)
Query: 39 PPFSPKRQKPQNPRTQ-----QNP---PVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEP 90
PP S +KPQ Q P P S TNK PL+SDLPFDF++SY+E+ P V P
Sbjct: 36 PPPSLSPEKPQTSNNNNNKKKQKPEYRPPSSLETNKKPLRSDLPFDFRFSYTESCPDVRP 95
Query: 91 IGFREPKRFSPFGPGRLDRKWTGTTA----LAPKEVDRVRFEEE----------RNRVLG 136
IG REPK +SPFGPGRLDR WTG A L K VD EE R ++ G
Sbjct: 96 IGLREPK-YSPFGPGRLDRTWTGVCAPAVDLKVKSVDDGVGEEGLDLEEKRTVMREKIQG 154
Query: 137 DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLD 196
PLT+ E LV++ + + +QINLG G+THNML+D+HNHWK EAVR+KC+GVPT+D
Sbjct: 155 KPLTKAEGKILVDKCQRNKTKKQINLGIDGLTHNMLNDIHNHWKHDEAVRVKCMGVPTVD 214
Query: 197 MDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVA 256
M NVC LE+K+ GKII+R+ +L+LYRGRNY P++RPVIPLMLW+P+ P+YP+++K
Sbjct: 215 MKNVCTQLEDKTFGKIIHRHCGLLVLYRGRNYHPRNRPVIPLMLWKPHEPVYPRLIKTTI 274
Query: 257 DGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCK 316
DGL+ EETKEMR RGL P L KL+RNG + ++V VR+AF E+VR+DC + +D K
Sbjct: 275 DGLSIEETKEMRKRGLAVPALTKLSRNGYFGSLVPMVRDAFLVSELVRIDCQGLDRSDSK 334
Query: 317 KIGVKLRDLVPCVPILFKDEQIILWRGKE 345
KIG KLRDLVPC+ + F EQI++WRGK+
Sbjct: 335 KIGCKLRDLVPCILVTFDKEQIVVWRGKD 363
>gi|413921149|gb|AFW61081.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 291
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 159/216 (73%), Positives = 186/216 (86%), Gaps = 3/216 (1%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +P PIGFREP RFSPFGPGRLDR W GT A + D
Sbjct: 71 PAHSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAA--RVGDYASG 128
Query: 128 EEE-RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVR 186
+E R VLG+PL+EEE+A LVERYRHSDC+RQINLGK GVTHNMLDD+HNHWKRAEAVR
Sbjct: 129 DERIREEVLGEPLSEEEVAALVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVR 188
Query: 187 IKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAP 246
IKCLGVPTLDMDN+CFHLE+K+GGK++ R+INI++LYRGRNYDP+ RP +PLMLW+P AP
Sbjct: 189 IKCLGVPTLDMDNICFHLEDKTGGKVVSRSINIIILYRGRNYDPQKRPGVPLMLWKPLAP 248
Query: 247 IYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
IYPK+V+NVA+GLTFEETKE+RNRGL+SPPL KL++
Sbjct: 249 IYPKLVQNVAEGLTFEETKELRNRGLNSPPLTKLSK 284
>gi|255541412|ref|XP_002511770.1| conserved hypothetical protein [Ricinus communis]
gi|223548950|gb|EEF50439.1| conserved hypothetical protein [Ricinus communis]
Length = 411
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 175/326 (53%), Positives = 221/326 (67%), Gaps = 20/326 (6%)
Query: 39 PPFSPKRQKPQNPRTQ--------QNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEP 90
PP S Q QNP + PP T K P SDLPFDF+YSY+E++ +V P
Sbjct: 39 PPPSLSPQNHQNPNSTPKKKRKPLYRPPSSLDRTGKKPTHSDLPFDFRYSYTESSQSVRP 98
Query: 91 IGFREPKRFSPFGPGRLDRKWTGTTA--LAPK-----EVDRVRFEEER----NRVLGDPL 139
IG REPK +SPFGP RLDR WTG A + PK + EE+R ++ G PL
Sbjct: 99 IGLREPK-YSPFGPDRLDRAWTGVCAPVVEPKLKFVDGSENPNLEEKRRWWREQIQGQPL 157
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E LVE + +QINLG+ G+THNML+D+HNHWK AEAVRIKCLGVPT+DM N
Sbjct: 158 TNAERKILVESCQRHKTKKQINLGRDGLTHNMLNDIHNHWKHAEAVRIKCLGVPTVDMKN 217
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
VC LE+K+ GKII+R+ +L+LYRGRNY PK RPVIPLM+WRP+ PIYPK++K +GL
Sbjct: 218 VCTQLEDKTFGKIIHRHCGLLVLYRGRNYHPKKRPVIPLMMWRPHEPIYPKLIKTTIEGL 277
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
+ EETKEMR +GL P L KL +NG Y ++V VR+AF E+VR+DC + +D KKIG
Sbjct: 278 SIEETKEMRKKGLALPALTKLAKNGYYASLVPMVRDAFLVNELVRIDCQGLPKSDYKKIG 337
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPC+ + F+ EQI++WRGK+
Sbjct: 338 CKLRDLVPCILVTFEKEQIVVWRGKD 363
>gi|242078343|ref|XP_002443940.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
gi|241940290|gb|EES13435.1| hypothetical protein SORBIDRAFT_07g004760 [Sorghum bicolor]
Length = 437
Score = 336 bits (862), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 166/291 (57%), Positives = 214/291 (73%), Gaps = 17/291 (5%)
Query: 71 SDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEE 130
SDLPFDF++SY+E+ PA +PIG REP R+SPFGPGRLDR WTG A A R E+
Sbjct: 81 SDLPFDFRFSYTESTPASKPIGLREP-RYSPFGPGRLDRPWTGLCAPAVDATLRDVEAED 139
Query: 131 ----------------RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDD 174
R RVLG+PLT E A LV++ + + RQINLG+ G+THNML+D
Sbjct: 140 PLPDAEKGLEEARRRERERVLGEPLTPAERAFLVDKCQKNRTKRQINLGRDGLTHNMLND 199
Query: 175 LHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRP 234
+HN+WK EAVRIKCLGVPT+DM NVC LE+K+GG II+R+ ++L+LYRGR+Y+PK RP
Sbjct: 200 IHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGVIIHRHGSLLILYRGRHYNPKKRP 259
Query: 235 VIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVR 294
VIPLMLW+P P+YP+++K +GLT EETK+MR +GLH+P L KL +NG Y ++V VR
Sbjct: 260 VIPLMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHAPVLTKLAKNGYYASIVPMVR 319
Query: 295 EAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
+AF +E+VR+DC + +D KKIGVKLRDLVPC+ + F EQII+WRGKE
Sbjct: 320 DAFLMDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFDKEQIIVWRGKE 370
>gi|356560247|ref|XP_003548405.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Glycine
max]
Length = 396
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 165/325 (50%), Positives = 227/325 (69%), Gaps = 16/325 (4%)
Query: 39 PPFSPKRQKPQNPRTQQNPPVPSSNTNKLPLKS-DLPFDFKYSYSENNPAVEPIGFREPK 97
PP P ++KP+ PR + PP + P++S DLPFDF++SY+E++ V PIG REPK
Sbjct: 51 PPSKPNQKKPK-PRYR--PPSSLDQAGRKPVRSNDLPFDFRFSYTESSAKVRPIGLREPK 107
Query: 98 RFSPFGPGRLDRKWTGTTALAPKEV-------DRVRFEEERNR----VLGDPLTEEEIAE 146
+SPFGPGR+DRKWTG A A + + EE+R + + G PL+ EE
Sbjct: 108 -YSPFGPGRVDRKWTGVCAPAVDPTVESLEGPEDPKLEEQRKKKREMIQGKPLSSEERKA 166
Query: 147 LVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
LV ++ S R +NLG+ G+THNML+ +HNHWK AEAVRIKC+GVPT+DM+N+C LE+
Sbjct: 167 LVSQFERSKTNRHVNLGRDGLTHNMLNVIHNHWKFAEAVRIKCMGVPTMDMNNICTQLED 226
Query: 207 KSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKE 266
K+ GK+I+R+ L+LYRGRNY+PK RPVIP+MLW+P+ P+YP+++K DGL+ +ETKE
Sbjct: 227 KTFGKVIFRHGGTLILYRGRNYNPKKRPVIPVMLWKPHEPVYPRLIKTTIDGLSIKETKE 286
Query: 267 MRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLV 326
MR RGL P L KL +NG Y +V VR+AF + E+VR+DC + D KKIG KLRD+V
Sbjct: 287 MRKRGLSVPALTKLAKNGYYAFLVPMVRDAFLSCELVRIDCEGLERKDYKKIGCKLRDMV 346
Query: 327 PCVPILFKDEQIILWRGKEQAMDSD 351
PC+ + F++EQI++WRGK+ D
Sbjct: 347 PCILVTFENEQIVVWRGKDYKHPKD 371
>gi|449432211|ref|XP_004133893.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like [Cucumis
sativus]
gi|449480099|ref|XP_004155799.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 1,
mitochondrial-like [Cucumis sativus]
Length = 392
Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 168/301 (55%), Positives = 217/301 (72%), Gaps = 13/301 (4%)
Query: 65 NKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA--PKEV 122
K P +S+LPFDF+YSY+E +P+V PIG REPK +SPFGPGRLDR+WTG A A PK
Sbjct: 69 GKKPRRSNLPFDFQYSYTETSPSVRPIGLREPK-YSPFGPGRLDREWTGVCAPAANPKAT 127
Query: 123 DRVRFE----EERNRVL-----GDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLD 173
E E + RV+ G+PL E LVE+ + + RQINLG+ G+THNML+
Sbjct: 128 SVEGMEDPRLEGKRRVMREAIQGEPLPGAERKALVEKCQKNKTKRQINLGRDGLTHNMLN 187
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDR 233
D+HNHW+ EAVRIKCLGVPT+DM NVC LE+K+ GKII+R+ L+LYRGRNY+PK R
Sbjct: 188 DIHNHWRHGEAVRIKCLGVPTVDMKNVCTQLEDKTFGKIIHRHGGFLVLYRGRNYNPKKR 247
Query: 234 PVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKV 293
P IPLMLWRP+ PIYP+++K DGL+ +ETKEMR +GL P L KL +NG Y ++V V
Sbjct: 248 PFIPLMLWRPHEPIYPRLIKTTIDGLSIDETKEMRKKGLAVPALTKLAKNGYYGSLVPMV 307
Query: 294 REAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE-QAMDSDP 352
R+AF + E+VR+DC + +D KKIG KLRDLVPC+ + F EQI++WRGK+ Q +D+
Sbjct: 308 RDAFLSCELVRIDCKGLERSDYKKIGCKLRDLVPCILVTFDKEQIVVWRGKDYQPLDTGY 367
Query: 353 L 353
L
Sbjct: 368 L 368
>gi|226508160|ref|NP_001140244.1| uncharacterized protein LOC100272285 [Zea mays]
gi|194698680|gb|ACF83424.1| unknown [Zea mays]
gi|413917198|gb|AFW57130.1| hypothetical protein ZEAMMB73_054545 [Zea mays]
Length = 424
Score = 330 bits (845), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 168/314 (53%), Positives = 213/314 (67%), Gaps = 23/314 (7%)
Query: 57 PPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTA 116
PP + P SDLPFDF++SY+E+ PA +PIG REP R+SPFGPGRLDR WTG A
Sbjct: 68 PPSSLDRGGRPPAHSDLPFDFRFSYTESTPASKPIGLREP-RYSPFGPGRLDRPWTGLCA 126
Query: 117 LAPKEVDRVRFEEERNRVLGD-------------------PLTEEEIAELVERYRHSDCA 157
A VD + E L D PLT E A LV+R + +
Sbjct: 127 PA---VDATLRDVEAEDPLPDAERGLEEARRRERERVLGEPLTPAERAFLVDRCQKNRTK 183
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
RQINLG+ G THNML D+HN+WK EAVRIKCLGVPT+DM NVC LE+K+GG II+R+
Sbjct: 184 RQINLGRDGFTHNMLSDVHNNWKTCEAVRIKCLGVPTVDMQNVCHQLEDKTGGLIIHRHG 243
Query: 218 NILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPL 277
++L+LYRGR+Y+PK RPV+PLMLW+P P+YP+++K +GLT EETK+MR +GLH P L
Sbjct: 244 SLLILYRGRHYNPKKRPVVPLMLWKPAEPVYPRLIKTTIEGLTVEETKQMRKKGLHVPVL 303
Query: 278 MKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQ 337
KL +NG Y ++V VR+AF T+E+VR+DC + +D KKIGVKLRDLVPC+ + F EQ
Sbjct: 304 TKLAKNGYYASLVPMVRDAFLTDELVRIDCKGLPKSDYKKIGVKLRDLVPCILVSFDKEQ 363
Query: 338 IILWRGKEQAMDSD 351
II+WRG E D
Sbjct: 364 IIVWRGNEDGSLQD 377
>gi|357144801|ref|XP_003573418.1| PREDICTED: CRS2-associated factor 1, mitochondrial-like
[Brachypodium distachyon]
Length = 437
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/322 (51%), Positives = 216/322 (67%), Gaps = 17/322 (5%)
Query: 40 PFSPKRQKPQNPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRF 99
P + +K + + PP + SDLPFDF++SY+E+ P +PIG REPK +
Sbjct: 44 PHAAAEKKRRTKKPPYRPPSSLDRGGRPASHSDLPFDFRFSYTESTPDAKPIGLREPK-Y 102
Query: 100 SPFGPGRLDRKWTGTTALAPKEVDRVRFEEE----------------RNRVLGDPLTEEE 143
SPFGPGRLDR WTG A A R E+ R RVLG+PLT E
Sbjct: 103 SPFGPGRLDRPWTGLCAPAVDTTIRDVHAEDPAPAAEKDLQEARRRERERVLGEPLTPAE 162
Query: 144 IAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFH 203
+V++ + + RQ+NLG+ G+THNML+D+HNHWK EAVR+KCLGVPT+DM NVC
Sbjct: 163 RTFVVDKCQRNRTKRQVNLGRDGLTHNMLNDIHNHWKHGEAVRVKCLGVPTVDMQNVCHE 222
Query: 204 LEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEE 263
LE+K+GG II+R+ L+LYRGR+Y PK RPVIPLMLW+P PIYP+++K +GLT E
Sbjct: 223 LEDKTGGLIIHRHGGQLILYRGRHYHPKKRPVIPLMLWKPAEPIYPRLIKTTIEGLTVVE 282
Query: 264 TKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLR 323
TK MR +GLH P L KL +NG Y ++V VR+AF T+E+VR+DC + +D +KIGVKLR
Sbjct: 283 TKAMRKKGLHVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDCKGLPKSDYRKIGVKLR 342
Query: 324 DLVPCVPILFKDEQIILWRGKE 345
DLVPC+ + F EQII+WRGK+
Sbjct: 343 DLVPCILVSFDKEQIIIWRGKD 364
>gi|326525102|dbj|BAK07821.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 443
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 167/317 (52%), Positives = 219/317 (69%), Gaps = 20/317 (6%)
Query: 49 QNPRTQQNPPVPSSNTNKL---PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPG 105
Q RT++ P P S+ ++ SDLPFDF++SY+E++ +PIG REPK +SPFGPG
Sbjct: 55 QKRRTKKPPYRPPSSLDRGDRPASHSDLPFDFRFSYTESSLDAKPIGLREPK-YSPFGPG 113
Query: 106 RLDRKWTGTTALAPKEVDRVRFEEE----------------RNRVLGDPLTEEEIAELVE 149
RLDR W+G A A R E+ R RVLG+PLT E + LVE
Sbjct: 114 RLDRPWSGLCAPAVDTTLRSVDAEDPAPAAEKDLEEARRRERERVLGEPLTPAERSFLVE 173
Query: 150 RYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSG 209
+ + + RQINLG+ G+THNML+D+HNHWK E VR+KCLGVPT+DM NVC LE+K+G
Sbjct: 174 KCQKNRTKRQINLGRDGLTHNMLNDIHNHWKHGEGVRVKCLGVPTVDMQNVCHELEDKTG 233
Query: 210 GKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRN 269
G II+R+ L+LYRGR+Y PK RPVIPLMLW+P PIYP+++K +GLT EETKEMR
Sbjct: 234 GLIIHRHGGQLILYRGRHYHPKKRPVIPLMLWKPAEPIYPRLIKTTIEGLTVEETKEMRK 293
Query: 270 RGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCV 329
+GLH+ L KL +NG Y ++V VR+ F T+E+VR+DC + +D +KIGVKLRDLVPC+
Sbjct: 294 KGLHASVLTKLAKNGYYASLVPMVRDGFLTDELVRIDCKGLPKSDYRKIGVKLRDLVPCI 353
Query: 330 PILFKDEQIILWRGKEQ 346
+ F EQII+WRGK+
Sbjct: 354 LVSFDKEQIIVWRGKDH 370
>gi|115475027|ref|NP_001061110.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|75133775|sp|Q6Z4U2.1|CAF1M_ORYSJ RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|40253285|dbj|BAD05220.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|40253602|dbj|BAD05547.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113623079|dbj|BAF23024.1| Os08g0174900 [Oryza sativa Japonica Group]
gi|125560323|gb|EAZ05771.1| hypothetical protein OsI_28005 [Oryza sativa Indica Group]
Length = 428
Score = 325 bits (834), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/292 (54%), Positives = 209/292 (71%), Gaps = 17/292 (5%)
Query: 70 KSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE 129
+SDLPFDF++SY+E++P +PIG REPK +SPFGPGRLDR WTG A A R +
Sbjct: 73 RSDLPFDFRFSYTESSPGDKPIGLREPK-YSPFGPGRLDRPWTGLCAPAVDTTLRDAHAD 131
Query: 130 ERNR----------------VLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLD 173
+ VLG+PLT E A LV + + S +QINLG+ G+THNML+
Sbjct: 132 DPAPAAERELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLN 191
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDR 233
D+HNHWK EAVR+KCLGVPT+DM NVC LE+K+GG II+R+ L+LYRGR+Y+PK R
Sbjct: 192 DIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKR 251
Query: 234 PVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKV 293
PVIPLMLW+P P+YP+++K +GLT EETKEMR +GL+ P L KL +NG Y ++V V
Sbjct: 252 PVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMV 311
Query: 294 REAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
R+AF T+E+VR+D + +D +KIGVKLRDLVPC+ + F EQII+WRGK+
Sbjct: 312 RDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKD 363
>gi|297802930|ref|XP_002869349.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315185|gb|EFH45608.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 408
Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 162/296 (54%), Positives = 211/296 (71%), Gaps = 12/296 (4%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA- 118
PSS + SDLPFDF++SY+E++ V PIG REPK +SPFGP RLDR+WTG A A
Sbjct: 71 PSSLEGVKTVHSDLPFDFRFSYTESSSNVRPIGLREPK-YSPFGPDRLDREWTGVCAPAV 129
Query: 119 -PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELVERYRHSDCARQINLGKWGVT 168
PK VD V + EE+R +V G LTE E LVE + + RQ+NLG+ G+T
Sbjct: 130 DPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLT 189
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
HNML+D++NHWK AEAVR+KCLGVPTLDM NV FHLE+K+ G+++ ++ L+LYRGRNY
Sbjct: 190 HNMLNDIYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHCGTLVLYRGRNY 249
Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVN 288
DPK RP IPLMLW+P+ P+YP+++K DGL+ +ETK MR +GL P L KL +NG Y +
Sbjct: 250 DPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGS 309
Query: 289 VVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
+V VR+AF E+VR+DC + D KKIG KLRDLVPC+ + F EQ+++WRGK
Sbjct: 310 LVPMVRDAFLVSELVRIDCLGLDRKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGK 365
>gi|22329043|ref|NP_194830.2| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75161464|sp|Q8VYD9.1|CAF1M_ARATH RecName: Full=CRS2-associated factor 1, mitochondrial; Flags:
Precursor
gi|18176015|gb|AAL59968.1| unknown protein [Arabidopsis thaliana]
gi|20465409|gb|AAM20129.1| unknown protein [Arabidopsis thaliana]
gi|332660446|gb|AEE85846.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 405
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 211/297 (71%), Gaps = 12/297 (4%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA- 118
PSS + SDLPFDF++SY+E+ V PIG REPK +SPFGP RLDR+WTG A A
Sbjct: 70 PSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPK-YSPFGPDRLDREWTGVCAPAV 128
Query: 119 -PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELVERYRHSDCARQINLGKWGVT 168
PK VD V + EE+R +V G LTE E LVE + + RQ+NLG+ G+T
Sbjct: 129 NPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLT 188
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
HNML+D++NHWK AEAVR+KCLGVPTLDM NV FHLE+K+ G+++ ++ L+LYRGRNY
Sbjct: 189 HNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVN 288
DPK RP IPLMLW+P+ P+YP+++K DGL+ +ETK MR +GL P L KL +NG Y +
Sbjct: 249 DPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGS 308
Query: 289 VVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
+V VR+AF E+VR+DC + D KKIG KLRDLVPC+ + F EQ+++WRGK+
Sbjct: 309 LVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKD 365
>gi|125602364|gb|EAZ41689.1| hypothetical protein OsJ_26223 [Oryza sativa Japonica Group]
Length = 615
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 150/276 (54%), Positives = 197/276 (71%), Gaps = 9/276 (3%)
Query: 70 KSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE 129
+SDLPFDF++SY+E++P +PIG REPK + A A K
Sbjct: 73 RSDLPFDFRFSYTESSPGEKPIGLREPK---------VRDAQAEDPAPAAKRELEEARRR 123
Query: 130 ERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKC 189
ER RVLG+PLT E A LV + + S +QINLG+ G+THNML+D+HNHWK EAVR+KC
Sbjct: 124 ERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKC 183
Query: 190 LGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYP 249
LGVPT+DM NVC LE+K+GG II+R+ L+LYRGR+Y+PK RPVIPLMLW+P P+YP
Sbjct: 184 LGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKRPVIPLMLWKPAEPVYP 243
Query: 250 KVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSH 309
+++K +GLT EETKEMR +GL+ P L KL +NG Y ++V VR+AF T+E+VR+D
Sbjct: 244 RLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLTDELVRIDSKG 303
Query: 310 VGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
+ +D +KIGVKLRDLVPC+ + F EQII+WRGK+
Sbjct: 304 LPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKD 339
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/183 (60%), Positives = 146/183 (79%)
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+D+HNHWK EAVR+KCLGVPT+DM NVC LE+K+GG II+R+ L+L
Sbjct: 368 GRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLIL 427
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
YRGR+Y+PK RPVIPLMLW+P P+YP+++K +GLT EETKEMR +GL+ P L KL +
Sbjct: 428 YRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAK 487
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NG Y ++V VR+AF T+E+VR+D + +D +KIGVKLRDLVPC+ + F EQII+WR
Sbjct: 488 NGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWR 547
Query: 343 GKE 345
GK+
Sbjct: 548 GKD 550
>gi|224113759|ref|XP_002332503.1| predicted protein [Populus trichocarpa]
gi|222832483|gb|EEE70960.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/343 (43%), Positives = 206/343 (60%), Gaps = 40/343 (11%)
Query: 39 PPFSPKRQKPQNPRTQQNPPVPSSNTNKLP------LKSDLPFDFKYSYSENNPAVEPIG 92
P F PK + PR PP+ KL + PF+FKYSY+E P V+P+
Sbjct: 114 PAFLPKITRVPLPRNNAKPPIDRKADIKLSEDGVSYVIDGAPFEFKYSYTET-PKVKPLK 172
Query: 93 FREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV---------------------- 125
RE ++PFGP + R WTG L P +E D
Sbjct: 173 LREAP-YAPFGPITMPRPWTGRAPLPPSKKKLREFDSFVLPPPDKKGVKPVQAPGPFLPG 231
Query: 126 ---RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRA 182
R+ + R +LGDPLT+EEI ELV+ + RQ+N+G+ G+THNMLD++H HWKR
Sbjct: 232 AGPRYAKTREEILGDPLTQEEIQELVDGCLKAK--RQLNMGRDGLTHNMLDNIHAHWKRR 289
Query: 183 EAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWR 242
+IKC GV T+DMDNVC LEE++GGKIIYR +L L+RGRNY+ + RP PLMLW+
Sbjct: 290 RVCKIKCKGVCTVDMDNVCQQLEERTGGKIIYRKGGVLYLFRGRNYNYRFRPRFPLMLWK 349
Query: 243 PYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEV 302
P P+YP++++ +GLT +E MRN+G P+ KL +NGVY ++V VREAF+ E+
Sbjct: 350 PVTPVYPRLIQRAPEGLTLQEASGMRNKGRKLIPICKLGKNGVYRDLVRNVREAFEECEL 409
Query: 303 VRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
VR++C + +D +KIG KLRDLVPCV I F+ E I++WRG++
Sbjct: 410 VRINCQGMNGSDFRKIGAKLRDLVPCVLISFECEHILMWRGRD 452
>gi|357520913|ref|XP_003630745.1| CRS2-associated factor [Medicago truncatula]
gi|355524767|gb|AET05221.1| CRS2-associated factor [Medicago truncatula]
Length = 698
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 143/301 (47%), Positives = 190/301 (63%), Gaps = 34/301 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV--- 125
PF+FKYSY+E P +P+ REP F PFGP + R WTG L P KE D
Sbjct: 79 PFEFKYSYTET-PKSKPVQMREPP-FVPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLP 136
Query: 126 ----------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
R+ R VLG+PLT+EEI ELV S +RQ+NLG
Sbjct: 137 PPHKKGVKPVQSPGPFLPGTSPRYVMSREEVLGEPLTKEEINELVRSTLKS--SRQLNLG 194
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G HNMLD++H HWKR +IKC+GV T+DMDNVC LEEK+GGK+IYR ++ L+
Sbjct: 195 RDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEEKTGGKVIYRRGGVIYLF 254
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ K RP PLMLW+P P+YP++++ V +GLT EE EMR +G P+ KL +N
Sbjct: 255 RGRNYNHKTRPRFPLMLWKPVPPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKN 314
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY N+V VREAF+ E+VR++C + +D +KIG KLRDLVPC + +++E I++WRG
Sbjct: 315 GVYYNLVNNVREAFEECELVRVNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRG 374
Query: 344 K 344
+
Sbjct: 375 R 375
>gi|255589857|ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
gi|223524018|gb|EEF27274.1| conserved hypothetical protein [Ricinus communis]
Length = 748
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 141/315 (44%), Positives = 195/315 (61%), Gaps = 37/315 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV--- 125
PF+FKYSY+E P +PI RE FSPFGP + R WTG L P +E D
Sbjct: 159 PFEFKYSYTET-PKAKPIKLREAP-FSPFGPTTMGRPWTGRAPLPPSKKKLREFDSFKLP 216
Query: 126 ----------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
R+ R +LG+PLT EE+ L+E + RQ+N+G
Sbjct: 217 PPDKKGVKPVQKPGPFLPGAGPRYVYSREEILGEPLTTEEVKILIEGCLKT--RRQLNMG 274
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNMLD++H HWKR +IKC+GV T+DMDNVC LEE++GGK+IYR ++ L+
Sbjct: 275 RDGLTHNMLDNIHAHWKRRRVCKIKCMGVCTVDMDNVCQQLEERTGGKVIYRKGGVVYLF 334
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P P+YP+++K +GLT EE EMR +G P+ KL +N
Sbjct: 335 RGRNYNYRTRPRFPLMLWKPVTPVYPRLIKRAPEGLTLEEASEMRRKGRKLIPICKLAKN 394
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY N+V +VREAF+ E+VR+DC V +D +K+G KL++LVPC+ I F+ E I++WRG
Sbjct: 395 GVYCNLVKEVREAFEECELVRIDCQGVNGSDYRKVGAKLKELVPCLLISFEHEHILMWRG 454
Query: 344 KEQAMDSDPLIDPTN 358
++ +I P N
Sbjct: 455 RDW---KSSMIKPVN 466
>gi|297836246|ref|XP_002886005.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
gi|297331845|gb|EFH62264.1| hypothetical protein ARALYDRAFT_480467 [Arabidopsis lyrata subsp.
lyrata]
Length = 700
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 194/302 (64%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL-----APKEVDRVRFE 128
PF+FKYSY+E P V+P+ REP ++PFGP + R WTG L P+E D R
Sbjct: 150 PFEFKYSYTET-PKVKPLKLREPA-YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLP 207
Query: 129 EE-------------------------RNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
+ + +LG+PLT+EEI ELV + RQ+N+G
Sbjct: 208 PDGKKGVKPVQKPGPFRPGLGPRYVYTKEEILGEPLTKEEIRELVTSCLKT--TRQLNMG 265
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+++H+ WKR +IKC GV T+DMD VC LEEK GGK+IYR +L L+
Sbjct: 266 RDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDKVCEQLEEKIGGKVIYRRGGVLFLF 325
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P AP+YP++++ V +GLT +E EMR +G P+ KL +N
Sbjct: 326 RGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTLQEATEMRRKGRELMPICKLGKN 385
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY ++V V+EAF+ E+VR+DC + +D +KIG KL+DLVPCV I F++EQI++WRG
Sbjct: 386 GVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLISFENEQILIWRG 445
Query: 344 KE 345
+E
Sbjct: 446 RE 447
>gi|2980765|emb|CAA18192.1| hypothetical protein [Arabidopsis thaliana]
gi|7270003|emb|CAB79819.1| hypothetical protein [Arabidopsis thaliana]
Length = 392
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 193/288 (67%), Gaps = 25/288 (8%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA- 118
PSS + SDLPFDF++SY+E+ V PIG REPK +SPFGP RLDR+WTG A A
Sbjct: 70 PSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPK-YSPFGPDRLDREWTGVCAPAV 128
Query: 119 -PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELVERYRHSDCARQINLGKWGVT 168
PK VD V + EE+R +V G LTE E LVE + + RQ+NLG+ G+T
Sbjct: 129 NPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLT 188
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
HNML+D++NHWK AEAVR+KCLGVPTLDM NV FHLE+K+ G+++ ++ L+LYRGRNY
Sbjct: 189 HNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKL-------- 280
DPK RP IPLMLW+P+ P+YP+++K DGL+ +ETK MR +GL P L KL
Sbjct: 249 DPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLGPYLFHAF 308
Query: 281 -----TRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLR 323
+NG Y ++V VR+AF E+VR+DC + D KKIG KLR
Sbjct: 309 LFLNSAKNGYYGSLVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLR 356
>gi|357132246|ref|XP_003567742.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like
[Brachypodium distachyon]
Length = 702
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 201/341 (58%), Gaps = 38/341 (11%)
Query: 39 PPFSPKRQKPQNPRTQQNPPVPSSNTNKLPLKSDL---PFDFKYSYSENNPAVEPIGFRE 95
P FS +R+ P P L L PF+F+YSY+E P P+ RE
Sbjct: 51 PAFSQRRRAKTIPILDTGDPAAGVRVTDRGLAYHLEGAPFEFQYSYTEA-PRARPVALRE 109
Query: 96 PKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFE--------------------------- 128
F PFGP R WTG L + F+
Sbjct: 110 AP-FLPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLPPHGKKGVKPVQSPGPFLAGMEP 168
Query: 129 ----EERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEA 184
+ R VLG+PL++EE+AELV+ + RQ+N+G+ G+THNML+++H HWKR
Sbjct: 169 RYQAQSREEVLGEPLSKEEVAELVKG--NLKAKRQLNIGRDGLTHNMLENIHAHWKRKRV 226
Query: 185 VRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPY 244
+IKC GV T+DMDNVC LEE+ GGK+I+R ++ L+RGRNY+ + RPV PLMLW+P
Sbjct: 227 CKIKCKGVCTVDMDNVCQQLEERVGGKVIHRQGGVVFLFRGRNYNYRTRPVFPLMLWKPA 286
Query: 245 APIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVR 304
AP+YP++VK V DGLT +E EMR +G P+ KL +NGVY N+V +VREAF+ ++VR
Sbjct: 287 APVYPRLVKTVPDGLTSDEATEMRKKGRQLTPVCKLGKNGVYANLVNEVREAFEACDLVR 346
Query: 305 LDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
+DCS + +DC+KIG KL+DLVPC+ + F+ E I++WRG +
Sbjct: 347 VDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGND 387
>gi|162462028|ref|NP_001105220.1| CRS2-associated factor 1, chloroplastic precursor [Zea mays]
gi|75147312|sp|Q84N49.1|CAF1P_MAIZE RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|30349367|gb|AAP22135.1| CRS2-associated factor 1 [Zea mays]
Length = 674
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 191/311 (61%), Gaps = 35/311 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTEA-PRARPVALREAP-FMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R +LG+PLT+EE++ELV+ S RQ+N+
Sbjct: 149 APGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSK--RQLNM 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+++H+HWKR +IKC GV T+DMDN+C LEEK GGK+I+R ++ L
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFL 266
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ + RP PLMLW+P AP+YP++V V GLT +E EMR RG PP+ KL +
Sbjct: 267 FRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGK 326
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY N+V +VREAF+ ++VR+DCS + +DC+KIG KL+DLVPC+ + F+ E I++WR
Sbjct: 327 NGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWR 386
Query: 343 GKEQAMDSDPL 353
G + PL
Sbjct: 387 GSDWKSSLPPL 397
>gi|168040806|ref|XP_001772884.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675795|gb|EDQ62286.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 463
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 190/305 (62%), Gaps = 34/305 (11%)
Query: 77 FKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA-----PKEVDRV------ 125
++YSY+E P V P+GFREP +SPFGP ++R WTG LA P+E D
Sbjct: 1 YQYSYTET-PKVAPVGFREPV-YSPFGPEGVNRPWTGRPPLAKSKKKPREFDSFNPPPIG 58
Query: 126 -------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWG 166
+ R +LG PLT E+ ELV + R RQINLG+ G
Sbjct: 59 RKGVKPVQAPGPYPEGQGPKLGRSREEILGAPLTSAEVRELVTKARKE--PRQINLGRDG 116
Query: 167 VTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGR 226
+THNML+ +H HWKR ++KC GVPT+DMDNVC LEEK+GGKII R + L+RGR
Sbjct: 117 LTHNMLNLVHEHWKRRRVCKVKCKGVPTVDMDNVCRVLEEKTGGKIILRQGGAVYLFRGR 176
Query: 227 NYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVY 286
NY+ K RPVIPLMLW+P APIYPK+++ GLT EE +R G PP+ L +NGVY
Sbjct: 177 NYNYKTRPVIPLMLWKPPAPIYPKLIEKAPAGLTIEEANNLRKLGRELPPVCHLGKNGVY 236
Query: 287 VNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQ 346
VN+V VR AFK +++V++DC ++ +D KKIG KL+DLVPCV + F+ E I++WRG E
Sbjct: 237 VNLVRDVRNAFKVDDLVKVDCKNMNPSDYKKIGAKLKDLVPCVLLSFERESILMWRGPES 296
Query: 347 AMDSD 351
+S
Sbjct: 297 LTESS 301
>gi|18399222|ref|NP_565462.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|75266026|sp|Q9SL79.2|CAF1P_ARATH RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|15028051|gb|AAK76556.1| unknown protein [Arabidopsis thaliana]
gi|20197570|gb|AAD24394.2| expressed protein [Arabidopsis thaliana]
gi|28393847|gb|AAO42331.1| unknown protein [Arabidopsis thaliana]
gi|330251862|gb|AEC06956.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 701
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 194/302 (64%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL-----APKEVDRVR-- 126
PF+FKYSY+E P V+P+ REP ++PFGP + R WTG L P+E D R
Sbjct: 150 PFEFKYSYTET-PKVKPLKLREPA-YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLP 207
Query: 127 -----------------------FEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
+ + +LG+PLT+EE+ ELV + RQ+N+G
Sbjct: 208 PVGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKT--TRQLNMG 265
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+++H+ WKR +IKC GV T+DMDNVC LEEK GGK+IYR +L L+
Sbjct: 266 RDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLF 325
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P AP+YP++++ V +GLT +E MR +G P+ KL +N
Sbjct: 326 RGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKN 385
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY ++V V+EAF+ E+VR+DC + +D +KIG KL+DLVPCV + F++EQI++WRG
Sbjct: 386 GVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRG 445
Query: 344 KE 345
+E
Sbjct: 446 RE 447
>gi|115436730|ref|NP_001043122.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|75109409|sp|Q5VMQ5.1|CAF1P_ORYSJ RecName: Full=CRS2-associated factor 1, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 1; Flags: Precursor
gi|55297418|dbj|BAD69270.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|55297612|dbj|BAD68987.1| putative CRS2-associated factor 1 [Oryza sativa Japonica Group]
gi|113532653|dbj|BAF05036.1| Os01g0495900 [Oryza sativa Japonica Group]
gi|215694476|dbj|BAG89423.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618506|gb|EEE54638.1| hypothetical protein OsJ_01906 [Oryza sativa Japonica Group]
Length = 701
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 193/311 (62%), Gaps = 35/311 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTET-PRARPVALREAP-FLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R VLG+PLT+EE+ ELV+ + RQ+N+
Sbjct: 149 PPGKKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTK--RQLNI 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+++H+HWKR +IKC GV T+DMDNVC LEEK GGK+I+ ++ L
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFL 266
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ + RP+ PLMLW+P AP+YP++VK + DGLT +E ++MR RG PP+ KL +
Sbjct: 267 FRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGK 326
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY+N+V +VREAF+ ++VR+DCS + +DC+KIG KL+DLVPC + F+ E I++WR
Sbjct: 327 NGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWR 386
Query: 343 GKEQAMDSDPL 353
G + PL
Sbjct: 387 GNDWKSSLPPL 397
>gi|218188278|gb|EEC70705.1| hypothetical protein OsI_02075 [Oryza sativa Indica Group]
Length = 701
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 193/311 (62%), Gaps = 35/311 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTET-PRARPVALREAP-FLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R VLG+PLT+EE+ ELV+ + RQ+N+
Sbjct: 149 PPGKKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTK--RQLNI 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+++H+HWKR +IKC GV T+DMDNVC LEEK GGK+I+ ++ L
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFL 266
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ + RP+ PLMLW+P AP+YP++VK + DGLT +E ++MR RG PP+ KL +
Sbjct: 267 FRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGK 326
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY+N+V +VREAF+ ++VR+DCS + +DC+KIG KL+DLVPC + F+ E I++WR
Sbjct: 327 NGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWR 386
Query: 343 GKEQAMDSDPL 353
G + PL
Sbjct: 387 GNDWKSSLPPL 397
>gi|242052829|ref|XP_002455560.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
gi|241927535|gb|EES00680.1| hypothetical protein SORBIDRAFT_03g013160 [Sorghum bicolor]
Length = 614
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 196/326 (60%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 122 PSGLSFRLP---GAPFDFQFSYSEG-PRAPPLAIREPA-FVPFAPPTMPRPWTGKAPLLT 176
Query: 120 KE------------------------------------VDRVRFE----EERNRVLGDPL 139
KE +D R R VLG+PL
Sbjct: 177 KEEKARRRGVRLHTPLGQEPPQTVSAHGIMMEVRDRRQMDLARVSPGDGRSREEVLGEPL 236
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 237 TPSEVRALVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 294
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ +YRGR+YDPK RP PLMLW+P P+YPK++K V +GL
Sbjct: 295 LCYHLEEKSGGKVIHRVGGVVFVYRGRHYDPKTRPHYPLMLWKPATPVYPKLIKEVPEGL 354
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR +G P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 355 TKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGNDLVKIDCEGLNPSDYKKIG 414
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F DEQI+++RGKE
Sbjct: 415 AKLRDLVPCVLLSFDDEQILMYRGKE 440
>gi|225445140|ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
Length = 752
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 189/303 (62%), Gaps = 34/303 (11%)
Query: 73 LPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV-- 125
+PF+ +YSY+E P V+PI REP F PFGP + R WTG L P KE D
Sbjct: 150 VPFELRYSYTET-PKVKPIALREPP-FLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQL 207
Query: 126 -----------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R+ R +LG+PLTEEEI ELV+ S RQ+N+
Sbjct: 208 PPPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKS--KRQLNM 265
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNMLD++H HWKR +IKC GV T+DMDNV LEEK+GGK+IY +L L
Sbjct: 266 GRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFL 325
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ ++RP PLMLW+P P+YP++V+ +GLT EE MR +G P+ KL +
Sbjct: 326 FRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAK 385
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY ++V VREAF+ E+VR++C + +D +KIG KL+DLVPCV I F+ E I++WR
Sbjct: 386 NGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWR 445
Query: 343 GKE 345
G +
Sbjct: 446 GSD 448
>gi|356527769|ref|XP_003532480.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 723
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/300 (46%), Positives = 190/300 (63%), Gaps = 34/300 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV--- 125
PF+FKYSY+E P V+PI RE F PFGP + R WTG L KE D
Sbjct: 108 PFEFKYSYTET-PKVKPIKMREAP-FVPFGPDTMPRPWTGRAPLPASKKKLKEFDSFVLP 165
Query: 126 ----------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
R+ + R +LG+PLT+EEI +LV+ + RQ+N+G
Sbjct: 166 PPHKKGVKPVQSPGPYLAGTGPRYVKSREEILGEPLTQEEIRDLVKSCMKAQ--RQLNIG 223
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNMLD++H HWKR A +I+C GV T+DMDNVC LEE++GGKII+R +L L+
Sbjct: 224 RDGLTHNMLDNIHAHWKRRRACKIRCKGVCTVDMDNVCHQLEERTGGKIIHRKGGVLYLF 283
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ K RP PLMLW+P P+YP++V+ V +GLT EE +MR +G P+ KL +N
Sbjct: 284 RGRNYNYKTRPHFPLMLWKPVPPVYPRLVQRVPEGLTLEEATKMRQKGSTLIPICKLGKN 343
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY ++V VREAF+ E+VR++C + +D +KIG KLRDLVPC + F+ E I++WRG
Sbjct: 344 GVYCDLVKTVREAFEECELVRINCQGLNKSDYRKIGAKLRDLVPCTLLSFEYEHILMWRG 403
>gi|242082009|ref|XP_002445773.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
gi|241942123|gb|EES15268.1| hypothetical protein SORBIDRAFT_07g025550 [Sorghum bicolor]
Length = 674
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 137/311 (44%), Positives = 190/311 (61%), Gaps = 35/311 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTEA-PRARPVALREAP-FLPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R +LG+PLT+EE+ ELV+ + RQ+N+
Sbjct: 149 PPGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVFELVKGSLKTK--RQLNM 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+++H+HWKR +IKC GV T+DMDN+C LEEK GGK+I+R ++ L
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNICQQLEEKVGGKVIHRQGGVIFL 266
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ + RP PLMLW+P AP+YP++V V GLT +E EMR RG PP+ KL +
Sbjct: 267 FRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRARGRQLPPICKLGK 326
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY N+V +VREAF+ ++VR+DCS + +DC+KIG KL+DLVPC+ + F+ E I++WR
Sbjct: 327 NGVYANLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWR 386
Query: 343 GKEQAMDSDPL 353
G + PL
Sbjct: 387 GSDWKSSLPPL 397
>gi|297738777|emb|CBI28022.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/303 (46%), Positives = 189/303 (62%), Gaps = 34/303 (11%)
Query: 73 LPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV-- 125
+PF+ +YSY+E P V+PI REP F PFGP + R WTG L P KE D
Sbjct: 150 VPFELRYSYTET-PKVKPIALREPP-FLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQL 207
Query: 126 -----------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R+ R +LG+PLTEEEI ELV+ S RQ+N+
Sbjct: 208 PPPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKS--KRQLNM 265
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNMLD++H HWKR +IKC GV T+DMDNV LEEK+GGK+IY +L L
Sbjct: 266 GRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFL 325
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ ++RP PLMLW+P P+YP++V+ +GLT EE MR +G P+ KL +
Sbjct: 326 FRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKLAK 385
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY ++V VREAF+ E+VR++C + +D +KIG KL+DLVPCV I F+ E I++WR
Sbjct: 386 NGVYTDLVNNVREAFEECELVRINCQGLNASDYRKIGAKLKDLVPCVLISFEHEHILMWR 445
Query: 343 GKE 345
G +
Sbjct: 446 GSD 448
>gi|449443167|ref|XP_004139352.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
gi|449521361|ref|XP_004167698.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Cucumis
sativus]
Length = 745
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 189/302 (62%), Gaps = 35/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+FKYSY+E P V+PI REP ++PFGP + R WTG L P + F+
Sbjct: 160 PFEFKYSYTET-PKVKPIKLREP--YAPFGPTTMSRPWTGRAPLPPSKKKLPEFDSFQLP 216
Query: 130 --------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
R +LG+PLT+EEI L+ +S+ RQ+N+G
Sbjct: 217 PKNKKGVKPVQAPGPFLAGSGPKYVMSREEILGEPLTKEEIKALIRGCINSN--RQLNIG 274
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+++H WKR +IKC GV T+DMDNV LEE++GGKIIY L LY
Sbjct: 275 RDGLTHNMLENIHALWKRRRVCKIKCKGVCTVDMDNVKQQLEERTGGKIIYSRGGALYLY 334
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ K RP PLMLW+P AP+YP++VK++ DGLT EE EMR +G P+ KL +N
Sbjct: 335 RGRNYNYKTRPRFPLMLWKPAAPVYPRLVKHIPDGLTLEEVTEMRKKGRKLIPICKLGKN 394
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY +V VREAF+ E+VR++C + +D +KIG KL+DLVPCV I F+ E I+LWRG
Sbjct: 395 GVYSALVKHVREAFEECELVRINCQGLNGSDFRKIGAKLKDLVPCVLISFESEHILLWRG 454
Query: 344 KE 345
++
Sbjct: 455 RD 456
>gi|162464008|ref|NP_001105669.1| CRS2-associated factor 2, chloroplastic precursor [Zea mays]
gi|75147311|sp|Q84N48.1|CAF2P_MAIZE RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|30349369|gb|AAP22136.1| CRS2-associated factor 2 [Zea mays]
gi|414877310|tpg|DAA54441.1| TPA: crs2 associated factor2 [Zea mays]
Length = 611
Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 196/326 (60%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 120 PSGLSFRLP---GAPFDFQFSYSEA-PRAPPLAIREPA-FLPFAPPTMPRPWTGKAPLLT 174
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE + RV + R+R VLG+PL
Sbjct: 175 KEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPL 234
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 235 TPSEVRALVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 292
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGR+YDPK RP PLMLW+P P+YPK++K DG
Sbjct: 293 LCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGF 352
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR +G P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 353 TKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIG 412
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F DEQI++ RGKE
Sbjct: 413 AKLRDLVPCVLLSFDDEQILMHRGKE 438
>gi|326525845|dbj|BAJ93099.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 607
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 143/325 (44%), Positives = 197/325 (60%), Gaps = 47/325 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
P+ T +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 118 PTGVTFRLP---GAPFDFQFSYSEV-PRAAPLAIREPP-FLPFAPPTMPRPWTGKAPLLT 172
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE RV + R+R VLG+PL
Sbjct: 173 KEEKARRRGVRLHTPLGQEPPRTASPHGVMMEVRGRRQLDFARVSLGDGRSREEVLGEPL 232
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E ELV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM+N
Sbjct: 233 TSAETRELVKP--HMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEVCKVRCRGVPTVDMNN 290
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I R ++ LYRGRNY+P+ RP PLMLW+P P+YPK+++ +GL
Sbjct: 291 LCYHLEEKSGGKVIKRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQQAPEGL 350
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR RG P++KL +NG+Y+N+V V++AF+ ++V++DC + +D KKIG
Sbjct: 351 TVEEAAEMRRRGQILLPILKLAKNGIYINLVKDVQDAFEGNDLVKIDCKGLEPSDYKKIG 410
Query: 320 VKLRDLVPCVPILFKDEQIILWRGK 344
KLRDLVPCV + F EQI+++RGK
Sbjct: 411 AKLRDLVPCVLLSFDKEQILIYRGK 435
>gi|357132021|ref|XP_003567631.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like
[Brachypodium distachyon]
Length = 607
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 199/326 (61%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS T +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 119 PSGVTFRLP---GAPFDFQFSYSEA-PRAAPLAIREPP-FLPFAPPTMPRPWTGKAPLLT 173
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE + RV + R R VLG+PL
Sbjct: 174 KEEKARRKGVRLHTPLGQESPQTVSPHGIMMEVRGRRQLDLGRVSPGDGRRREEVLGEPL 233
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 234 TPAEVRALVKP--HMSHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 291
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGRNY+P+ RP PLMLW+P P+YPK+++ +GL
Sbjct: 292 LCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQLAPEGL 351
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR RG + P+ KL +NG+Y+N+V VR+AF+ ++V+++C + +D KKIG
Sbjct: 352 TIEEAAEMRIRGQNLLPIFKLAKNGIYLNLVKDVRDAFEGNDLVKINCEGLEPSDYKKIG 411
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPC+ + F +EQI+++RGKE
Sbjct: 412 AKLRDLVPCILLSFDNEQILIYRGKE 437
>gi|356495236|ref|XP_003516485.1| PREDICTED: CRS2-associated factor 1, chloroplastic-like [Glycine
max]
Length = 705
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 193/293 (65%), Gaps = 26/293 (8%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-------------- 119
PF+F++SY+E P +P+ REP F+PFGP L R WTG + P
Sbjct: 154 PFEFRFSYTET-PNAKPVKLREPP-FAPFGPASLPRPWTGRNPVPPSKTTVKDFHALALP 211
Query: 120 ----KEVDRVRFE----EERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNM 171
+EV VR E R+ VLG+PLT++EI L++ S +RQ+N+G+ G+THNM
Sbjct: 212 PPDEEEVQPVRLAGPVWESRDEVLGEPLTKDEINRLIKATEKS--SRQLNIGRDGLTHNM 269
Query: 172 LDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPK 231
L+++H +W R A +IKC GV T+DMDNVC LEE++GGKIIYR + L+RG+NY+ +
Sbjct: 270 LENIHTYWMRRSACKIKCRGVCTVDMDNVCQQLEERTGGKIIYRQAGTVYLFRGKNYNYE 329
Query: 232 DRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVA 291
RP P M W+P +P+YP+++K V +GLT E+ EMR +G P+ KL +NGVY ++V
Sbjct: 330 TRPRFPFMRWKPVSPVYPRLIKRVPEGLTLEKATEMRQKGRDLMPICKLGKNGVYWDLVT 389
Query: 292 KVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
+REAF+ E+VR++C + T+D ++IG KL+DLVPC + F+++ I++WRG+
Sbjct: 390 NIREAFEECELVRINCQELNTSDYRRIGAKLKDLVPCALLSFENDHILMWRGQ 442
>gi|115436276|ref|NP_001042896.1| Os01g0323300 [Oryza sativa Japonica Group]
gi|75115027|sp|Q657G7.1|CAF2P_ORYSJ RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|52075771|dbj|BAD44991.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|52076260|dbj|BAD45045.1| putative CRS2-associated factor 2 [Oryza sativa Japonica Group]
gi|113532427|dbj|BAF04810.1| Os01g0323300 [Oryza sativa Japonica Group]
Length = 607
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 199/326 (61%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 116 PSGLSFRLP---GAPFDFRFSYSEC-PRAPPVAIREPA-FLPFAPPTMPRPWTGKAPLLT 170
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE + RV + R+R VLG+PL
Sbjct: 171 KEEKARRRGVRLHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPL 230
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ +LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 231 TAAEVRDLVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 288
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGRNY+P+ RP PLMLW+P P+YPK+++ +GL
Sbjct: 289 LCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGL 348
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR RG P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 349 TKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIG 408
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F +EQI+++RGKE
Sbjct: 409 AKLRDLVPCVLLSFDNEQILMFRGKE 434
>gi|125525663|gb|EAY73777.1| hypothetical protein OsI_01650 [Oryza sativa Indica Group]
Length = 609
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 199/326 (61%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 118 PSGLSFRLP---GAPFDFRFSYSEC-PRAPPVAIREPA-FLPFAPPTMPRPWTGKAPLLT 172
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE + RV + R+R VLG+PL
Sbjct: 173 KEEKARRRGVRLHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPL 232
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ +LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 233 TAAEVRDLVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 290
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGRNY+P+ RP PLMLW+P P+YPK+++ +GL
Sbjct: 291 LCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGL 350
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR RG P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 351 TKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIG 410
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F +EQI+++RGKE
Sbjct: 411 AKLRDLVPCVLLSFDNEQILMFRGKE 436
>gi|194697426|gb|ACF82797.1| unknown [Zea mays]
Length = 611
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 192/326 (58%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 120 PSGLSFRLP---GAPFDFQFSYSEA-PRAPPLAIREPA-FLPFAPPTMPRPWTGKAPLLT 174
Query: 120 KE------------------------------------VDRVRFE----EERNRVLGDPL 139
KE +D R R VLG+PL
Sbjct: 175 KEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPL 234
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 235 TPSEVRALVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 292
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGR+YDPK RP PLML +P P+YPK++K DG
Sbjct: 293 LCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLRKPATPVYPKLIKEAPDGF 352
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR +G P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 353 TKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIG 412
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F DEQI++ RGKE
Sbjct: 413 AKLRDLVPCVLLSFDDEQILMHRGKE 438
>gi|307135966|gb|ADN33825.1| RNA splicing factor [Cucumis melo subsp. melo]
Length = 603
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 134/302 (44%), Positives = 192/302 (63%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL---------------- 117
PF+F+YSYSE P V+PI REP F PF P + R WTG L
Sbjct: 149 PFEFQYSYSET-PNVKPIAIREPA-FLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPP 206
Query: 118 --APKEVDRVRF------------EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
K V +V+ + R +LG+PL EI LV+ H RQ+NLG
Sbjct: 207 PPGTKGVKQVQLPGPFPLGQYPKEGKSREEILGEPLKNWEIRMLVKP--HLSHNRQVNLG 264
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+ +H+HWKR +++C GVPT+DMDN+C H+EEK+GGKII+R +L L+
Sbjct: 265 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLF 324
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP P+MLW+P AP+YPK+++ +GLT EE E+R +G + P+ KL +N
Sbjct: 325 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKEEANELRMKGKNLLPICKLAKN 384
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+++V VR AF+ +V++DC+ + +D KK+G KL++LVPCV + F +EQI++WRG
Sbjct: 385 GVYISLVDDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRG 444
Query: 344 KE 345
K+
Sbjct: 445 KD 446
>gi|22329751|ref|NP_173754.2| CRS2-associated factor 2 [Arabidopsis thaliana]
gi|75173812|sp|Q9LDA9.1|CAF2P_ARATH RecName: Full=CRS2-associated factor 2, chloroplastic; AltName:
Full=Chloroplastic group IIA intron splicing facilitator
CRS2-associated factor 2; Flags: Precursor
gi|8778588|gb|AAF79596.1|AC007945_16 F28C11.4 [Arabidopsis thaliana]
gi|9295699|gb|AAF87005.1|AC005292_14 F26F24.27 [Arabidopsis thaliana]
gi|17065312|gb|AAL32810.1| Unknown protein [Arabidopsis thaliana]
gi|21387129|gb|AAM47968.1| unknown protein [Arabidopsis thaliana]
gi|332192262|gb|AEE30383.1| CRS2-associated factor 2 [Arabidopsis thaliana]
Length = 564
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 191/302 (63%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA--------------- 118
PF+F++SYSE P V+P+G REP F PF P + R WTG L
Sbjct: 110 PFEFQFSYSET-PKVKPVGIREPA-FMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 167
Query: 119 PKEVDRVRFEE---------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
P V++ E R VLG+PL E L++ + H + RQ+NLG
Sbjct: 168 PAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDN--RQVNLG 225
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G THNML+ +H+HWKR +++C GVPT+DM+NVC LEEK+GG+II+R ++ L+
Sbjct: 226 RDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLF 285
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P AP+YPK+++ V +GLT EE E R +G P+ KL++N
Sbjct: 286 RGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKN 345
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVYV++V VR+AF+ +V++DC + +D KKIG KL++LVPCV + F DEQI++WRG
Sbjct: 346 GVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRG 405
Query: 344 KE 345
+E
Sbjct: 406 RE 407
>gi|225425575|ref|XP_002267079.1| PREDICTED: CRS2-associated factor 2, chloroplastic [Vitis vinifera]
gi|297739063|emb|CBI28552.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/300 (44%), Positives = 191/300 (63%), Gaps = 34/300 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL---------------- 117
PF+F++SYSE P +P+ REP F PF P + R WTG L
Sbjct: 103 PFEFQFSYSET-PKAKPLAIREPA-FLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 160
Query: 118 --APKEVDRV---------RFEEE---RNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
K V RV +F E R +LG+PL++ EI LV+ Y + RQ+NLG
Sbjct: 161 PPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHN--RQVNLG 218
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+ +H+HWKR +++C GVPT+DMDNVC HLEEK+GGKII+R ++ L+
Sbjct: 219 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLF 278
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP P+MLW+P AP+YPK+++ +GLT E E+R +G + P+ +L +N
Sbjct: 279 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKN 338
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+++V VR+AF+ +V++DC + +D KKIG KL++LVPCV + F DEQI+ WRG
Sbjct: 339 GVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRG 398
>gi|356524038|ref|XP_003530640.1| PREDICTED: CRS2-associated factor 2, chloroplastic-like [Glycine
max]
Length = 593
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 191/303 (63%), Gaps = 35/303 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRV-------- 125
PF+F++SYSE P +PI REP F PF P + R WTG L K+ +V
Sbjct: 103 PFEFQFSYSET-PKAKPIAIREPA-FLPFAPPTMPRPWTGKAPLKGKKSKKVPLFDSFNP 160
Query: 126 --------------------RFEEE---RNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
+F E R +LG+PL + EI LV+ + RQ+NL
Sbjct: 161 PPAGTKGVKLVEMPGPFPMGQFPLEGKSREEILGEPLKKWEIHMLVKPMMSYN--RQVNL 218
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+ +H+HWKR +I+CLGVPT+DMDNVC H+EEK+GGKII+R ++ L
Sbjct: 219 GRDGLTHNMLELIHSHWKRRRVCKIRCLGVPTVDMDNVCHHIEEKTGGKIIHRVGGVVYL 278
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ RP P+MLW+P AP+YPK++++ GLT +E E+R +G P+ KL +
Sbjct: 279 FRGRNYNYSTRPQYPVMLWKPAAPVYPKLIQDAPGGLTKDEADELRMKGKSLLPICKLAK 338
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY ++V VR+AF+ +V+++C + +D KKIG KL+DLVPCV + F DEQI++WR
Sbjct: 339 NGVYTSLVKDVRDAFEGSILVKINCKGLDPSDYKKIGAKLKDLVPCVLLSFDDEQILMWR 398
Query: 343 GKE 345
GK+
Sbjct: 399 GKD 401
>gi|297850808|ref|XP_002893285.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
gi|297339127|gb|EFH69544.1| hypothetical protein ARALYDRAFT_335585 [Arabidopsis lyrata subsp.
lyrata]
Length = 565
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 191/302 (63%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA--------------- 118
PF+F++SYSE P +P+G REP F PF P + R WTG L
Sbjct: 112 PFEFQFSYSET-PKAKPVGIREPA-FMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 169
Query: 119 PKEVDRVRFEE---------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
P V++ E R +LG+PL + E L++ + H + RQ+NLG
Sbjct: 170 PAGKSGVKYVEMPGPLPFGRYPKEGMNREEILGEPLKKWEKGMLIKPHMHDN--RQVNLG 227
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G THNML+ +H+HWKR +++C GVPT+DMDNVC LEEK+GG+II+R ++ L+
Sbjct: 228 RDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMDNVCRVLEEKTGGEIIHRVGGVVYLF 287
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P AP+YPK+++ V +GLT EE E R +G P+ KL++N
Sbjct: 288 RGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEALEFRVKGKSLRPICKLSKN 347
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVYV++V VR+AF+ +V++DC + +D KKIG KL++LVPCV + F DEQI++WRG
Sbjct: 348 GVYVSLVKDVRDAFELSPLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRG 407
Query: 344 KE 345
++
Sbjct: 408 RD 409
>gi|359473240|ref|XP_003631275.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Vitis vinifera]
Length = 560
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 191/305 (62%), Gaps = 34/305 (11%)
Query: 69 LKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL----------- 117
L + PF+F++SYSE P +P+ REP F PF P + R WTG L
Sbjct: 98 LLAGAPFEFQFSYSET-PKAKPLAIREPA-FLPFAPPTMPRPWTGKAPLKKSKKKIPLFD 155
Query: 118 -------APKEVDRV---------RFEEE---RNRVLGDPLTEEEIAELVERYRHSDCAR 158
K V RV +F E R +LG+PL++ EI LV+ Y + R
Sbjct: 156 SFNPPPPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHN--R 213
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
Q+NLG+ G+THNML+ +H+HWKR ++ C GVPT+DMDNVC HLEEK+GGKII+R
Sbjct: 214 QVNLGRDGLTHNMLELIHSHWKRQRVCKVWCKGVPTIDMDNVCHHLEEKTGGKIIHRVGG 273
Query: 219 ILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLM 278
++ L+RGRNY+ + RP P+MLW+P AP+YPK+++ +GLT E E+R +G + P+
Sbjct: 274 VVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGXNLIPIC 333
Query: 279 KLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQI 338
+L +NGVY+++V VR+AF+ +V++DC + +D KKIG KL++ VPCV + F DEQI
Sbjct: 334 RLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKESVPCVLLSFDDEQI 393
Query: 339 ILWRG 343
+ WRG
Sbjct: 394 LTWRG 398
>gi|449478585|ref|XP_004155360.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 603
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL---------------- 117
PF+F+YSYSE P V+PI REP F PF P + R WTG L
Sbjct: 149 PFEFQYSYSET-PKVKPIAIREPA-FLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPP 206
Query: 118 --APKEVDRVRF------------EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
K V V+ + R +LG+PL EI LV+ H RQ+NLG
Sbjct: 207 PPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLVKP--HLSHNRQVNLG 264
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+ +H+HWKR +++C GVPT+DMDN+C H+EEK+GGKII+R +L L+
Sbjct: 265 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLF 324
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP P+MLW+P AP+YPK+++ +GLT +E +R +G + P+ KL +N
Sbjct: 325 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKN 384
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+++V VR AF+ +V++DC+ + +D KK+G KL++LVPCV + F +EQI++WRG
Sbjct: 385 GVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRG 444
Query: 344 KE 345
K+
Sbjct: 445 KD 446
>gi|449434945|ref|XP_004135256.1| PREDICTED: LOW QUALITY PROTEIN: CRS2-associated factor 2,
chloroplastic-like [Cucumis sativus]
Length = 602
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 190/302 (62%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL---------------- 117
PF+F+YSYSE P V+PI REP F PF P + R WTG L
Sbjct: 148 PFEFQYSYSET-PKVKPIAIREPA-FLPFAPPTMPRPWTGKAPLKSSKKKIPLFDSFNPP 205
Query: 118 --APKEVDRVRF------------EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
K V V+ + R +LG+PL EI LV+ H RQ+NLG
Sbjct: 206 PPGTKGVKLVQLPGPFPLGQHPKEGKSREEILGEPLKNWEIRMLVKP--HLSHNRQVNLG 263
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+ +H+HWKR +++C GVPT+DMDN+C H+EEK+GGKII+R +L L+
Sbjct: 264 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTVDMDNICHHIEEKTGGKIIHRVGGVLYLF 323
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP P+MLW+P AP+YPK+++ +GLT +E +R +G + P+ KL +N
Sbjct: 324 RGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKKEANVLRMKGKNLLPICKLAKN 383
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+++V VR AF+ +V++DC+ + +D KK+G KL++LVPCV + F +EQI++WRG
Sbjct: 384 GVYISLVNDVRHAFEGSILVKIDCTGMHESDYKKLGAKLKELVPCVLLSFDNEQILMWRG 443
Query: 344 KE 345
K+
Sbjct: 444 KD 445
>gi|168014860|ref|XP_001759969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688719|gb|EDQ75094.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 297
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/276 (48%), Positives = 187/276 (67%), Gaps = 14/276 (5%)
Query: 69 LKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFE 128
+K +LP F YS +P + P+GFREP +SPFGP + R WTG V+ +
Sbjct: 27 IKPELPCQFSYS---EHPNIPPLGFREPV-YSPFGPEGMARPWTGKQP----NVEGPKLG 78
Query: 129 EERNRVLGDPLTEEEIAELVERYRHSDCA--RQINLGKWGVTHNMLDDLHNHWKRAEAVR 186
R +LG+PLT++E+ ELV R CA R+++LGK G+THNML+ LH HWKR R
Sbjct: 79 RSREEILGEPLTKDEVRELVGR----ACAERRRLDLGKDGLTHNMLELLHRHWKRRRVCR 134
Query: 187 IKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAP 246
IKC GVPT+DMDN+C +EEKSGGKII R+ +L ++RGRNY+ RP IP+MLW+P AP
Sbjct: 135 IKCYGVPTVDMDNLCRVIEEKSGGKIIRRSQGMLYVFRGRNYNWNTRPQIPIMLWKPPAP 194
Query: 247 IYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLD 306
IYP VV++V +GL+ +E +R G L +L R GVY+N+V V++AF+ +E+V++D
Sbjct: 195 IYPSVVQSVPEGLSEKEADNLRALGRRIHCLCRLERAGVYINLVKMVKDAFEIDELVKID 254
Query: 307 CSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
C + +D KK+G KLRDLVPCVP+ F+ ++LW+
Sbjct: 255 CRELDRSDMKKVGAKLRDLVPCVPLSFERHFMLLWK 290
>gi|194688996|gb|ACF78582.1| unknown [Zea mays]
gi|194700546|gb|ACF84357.1| unknown [Zea mays]
gi|223974875|gb|ACN31625.1| unknown [Zea mays]
Length = 560
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 163/223 (73%), Gaps = 2/223 (0%)
Query: 131 RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCL 190
R +LG+PLT+EE++ELV+ S RQ+N+G+ G+THNML+++H+HWKR +IKC
Sbjct: 63 REDILGEPLTKEEVSELVKGSLKS--KRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCK 120
Query: 191 GVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPK 250
GV T+DMDN+C LEEK GGK+I+R ++ L+RGRNY+ + RP PLMLW+P AP+YP+
Sbjct: 121 GVCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNYNYRTRPCFPLMLWKPVAPVYPR 180
Query: 251 VVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHV 310
+V V GLT +E EMR RG PP+ KL +NGVY N+V +VREAF+ ++VR+DCS +
Sbjct: 181 LVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGL 240
Query: 311 GTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQAMDSDPL 353
+DC+KIG KL+DLVPC+ + F+ E I++WRG + PL
Sbjct: 241 NKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSDWKSSLPPL 283
>gi|302763677|ref|XP_002965260.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
gi|302809791|ref|XP_002986588.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300145771|gb|EFJ12445.1| hypothetical protein SELMODRAFT_42935 [Selaginella moellendorffii]
gi|300167493|gb|EFJ34098.1| hypothetical protein SELMODRAFT_62891 [Selaginella moellendorffii]
Length = 366
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 132/308 (42%), Positives = 190/308 (61%), Gaps = 34/308 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPK-----EVD----- 123
PF+F+Y+YSE P EPI R P+ FSPFGP + R WTG L P E+D
Sbjct: 1 PFEFQYTYSEM-PKEEPIAERGPQ-FSPFGPDTMPRPWTGRKPLPPSKKKRHEIDSFNPP 58
Query: 124 --------------------RVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
R R V+G+PLT +EI +LV RQ+N+G
Sbjct: 59 PPNLKGVKPVEPAGPFLEGQRPILATTREEVMGEPLTPDEIGDLVLACNKEH--RQVNIG 116
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
K G+THNMLD +H HWKR ++++C GVPT+DMDNVCFH+E+K+GGKII R+ + L+
Sbjct: 117 KDGLTHNMLDLIHCHWKRRRVIKLRCKGVPTIDMDNVCFHIEDKTGGKIIQRHGGSIYLF 176
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+P+ RP IPLM+W+P PIYP++++ GL+ E +R RG PL KL+RN
Sbjct: 177 RGRNYNPRYRPEIPLMMWKPPVPIYPRLIQQAPAGLSVEHADYLRRRGRRVKPLTKLSRN 236
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+++V +V+ AF+ +E+V+LDC + D +KIG KL++L+ V + F+D +++WRG
Sbjct: 237 GVYLHLVNEVKSAFEVDELVKLDCRGMNIADVRKIGAKLKELLGIVLLSFEDNCVLMWRG 296
Query: 344 KEQAMDSD 351
+ + +
Sbjct: 297 PAKLTEGE 304
>gi|255568848|ref|XP_002525395.1| conserved hypothetical protein [Ricinus communis]
gi|223535358|gb|EEF37033.1| conserved hypothetical protein [Ricinus communis]
Length = 561
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 128/301 (42%), Positives = 189/301 (62%), Gaps = 34/301 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA--------------- 118
PF+F++SYSE P V+P+ REP F PFGP + R WTG L
Sbjct: 99 PFEFQFSYSET-PKVKPLAIREPA-FLPFGPPTMPRPWTGKAPLKKSKKKKIPLFSNSIP 156
Query: 119 ------------PKEVDRVRFEEE---RNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
P ++ +F EE R +LG PLT EI +LV+ + RQ+NLG
Sbjct: 157 NDAKEGVKYFEMPGDLQFGKFPEEVKSRREILGKPLTRWEIKQLVKPLLSDN--RQVNLG 214
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+ +H+HW+R+ +++C G+PT+DM+N+C HLEE++GGKIIYR ++ L+
Sbjct: 215 RDGLTHNMLELIHSHWRRSPVCKVRCKGIPTVDMNNICRHLEERTGGKIIYRIGGVVYLF 274
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
GRNYD + R P+MLW+P AP+YPK++++ +GLT E E R +G + P+ KL +N
Sbjct: 275 CGRNYDYRSRVRYPVMLWKPAAPVYPKLIQDAPEGLTKAEADEFREKGKNLLPICKLAKN 334
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+ +V VR AF+ +V++DC + +D KK+G KL++LVPCV + F DE I++WRG
Sbjct: 335 GVYITLVRDVRNAFEGSPLVKIDCKGMNPSDYKKLGAKLKELVPCVLLSFDDEHILMWRG 394
Query: 344 K 344
+
Sbjct: 395 Q 395
>gi|224110940|ref|XP_002315689.1| predicted protein [Populus trichocarpa]
gi|222864729|gb|EEF01860.1| predicted protein [Populus trichocarpa]
Length = 506
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 133/302 (44%), Positives = 188/302 (62%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL---------------- 117
PF+F++SYSE P V+P+ REP F PF P + R WTG L
Sbjct: 49 PFEFQFSYSET-PKVKPLAIREPA-FLPFAPPTMPRPWTGKPPLKTSKKKIPVFDSFNPP 106
Query: 118 --APKEVDRV---------RFEEE---RNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
K V V +F EE R +LG+PL EI L++ H RQ+NLG
Sbjct: 107 PAGKKGVKYVEMPGPYPFGKFPEEGKSREEILGEPLKTWEIKLLIKP--HLSDNRQVNLG 164
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+ +H+HWKR +++C GVPT+DMDNVC HLEEK+GGKII+R ++ L+
Sbjct: 165 EDGLTHNMLELVHSHWKRRRVCKVRCKGVPTVDMDNVCRHLEEKTGGKIIHRVGGVVYLF 224
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP P+MLW+P P+YPK+++ +GLT + E R +G + P+ KL +N
Sbjct: 225 RGRNYNYRTRPQYPVMLWKPATPVYPKLIQEAPEGLTKAQADEFRKKGKNLLPICKLAKN 284
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY+ +V VR AF+ +V++DC + +D KK+G KL+DLVPCV + F DEQI++WRG
Sbjct: 285 GVYITLVRDVRAAFEGSPLVKVDCKGMEPSDYKKLGAKLKDLVPCVLLSFDDEQILMWRG 344
Query: 344 KE 345
++
Sbjct: 345 QD 346
>gi|222618317|gb|EEE54449.1| hypothetical protein OsJ_01538 [Oryza sativa Japonica Group]
Length = 587
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 134/305 (43%), Positives = 186/305 (60%), Gaps = 44/305 (14%)
Query: 81 YSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKE------------------- 121
YSE P P+ REP F PF P + R WTG L KE
Sbjct: 114 YSEC-PRAPPVAIREPA-FLPFAPPTMPRPWTGKAPLLTKEEKARRRGVRLHTPLGEEAP 171
Query: 122 -------------------VDRVRFEEERNR--VLGDPLTEEEIAELVERYRHSDCARQI 160
+ RV + R+R VLG+PLT E+ +LV+ H RQ+
Sbjct: 172 RTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPLTAAEVRDLVKP--HISHNRQL 229
Query: 161 NLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINIL 220
N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N+C+HLEEKSGGK+I+R ++
Sbjct: 230 NIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKVIHRVGGVV 289
Query: 221 LLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKL 280
LYRGRNY+P+ RP PLMLW+P P+YPK+++ +GLT EE EMR RG P+ KL
Sbjct: 290 FLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKL 349
Query: 281 TRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIIL 340
+NG+Y+ +V VR+AF+ ++V++DC + +D KKIG KLRDLVPCV + F +EQI++
Sbjct: 350 AKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFDNEQILM 409
Query: 341 WRGKE 345
+RGKE
Sbjct: 410 FRGKE 414
>gi|168045030|ref|XP_001774982.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673729|gb|EDQ60248.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 295
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/300 (44%), Positives = 186/300 (62%), Gaps = 36/300 (12%)
Query: 77 FKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFE-------- 128
+++SYSE P P+G+REP +SPFG + R + G + K+ ++R E
Sbjct: 1 YQFSYSET-PKETPLGYREP-LYSPFGHEGVTRPYLGRPSKM-KKTKKIRAESWGSFDSP 57
Query: 129 -----------------------EERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKW 165
+ R ++LG PLT E+ ELV + + D RQ+NLG+
Sbjct: 58 RADKNDVKPIHRSGSHPEPQPLGKSRAKILGAPLTTAEVEELVMQCQKED--RQLNLGRD 115
Query: 166 GVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRG 225
G THNML +H++WKR + VRIKC GVPT+DMDNVC LE+K+GGKII R ++ L+RG
Sbjct: 116 GFTHNMLASVHDYWKRRQVVRIKCKGVPTVDMDNVCTVLEDKTGGKIISRAGGVVYLFRG 175
Query: 226 RNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGV 285
RNY+ RP IPLMLWRP AP+YPK+++ +GLT EE +R RG P + L +NGV
Sbjct: 176 RNYNYNTRPKIPLMLWRPPAPVYPKLIQRAPEGLTVEEADSLRRRGRKIPAICHLGKNGV 235
Query: 286 YVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
Y+N+V VR AF+ + +V++DC + T+D +KIG KL+DLVPCV + F E I++W+G E
Sbjct: 236 YLNLVRDVRNAFQADNLVKVDCEKMNTHDLRKIGAKLKDLVPCVLLSFDHECILMWKGPE 295
>gi|42573097|ref|NP_974645.1| CRS2-associated factor 1 [Arabidopsis thaliana]
gi|332660445|gb|AEE85845.1| CRS2-associated factor 1 [Arabidopsis thaliana]
Length = 341
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/232 (55%), Positives = 165/232 (71%), Gaps = 12/232 (5%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA- 118
PSS + SDLPFDF++SY+E+ V PIG REPK +SPFGP RLDR+WTG A A
Sbjct: 70 PSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPK-YSPFGPDRLDREWTGVCAPAV 128
Query: 119 -PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELVERYRHSDCARQINLGKWGVT 168
PK VD V + EE+R +V G LTE E LVE + + RQ+NLG+ G+T
Sbjct: 129 NPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLT 188
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
HNML+D++NHWK AEAVR+KCLGVPTLDM NV FHLE+K+ G+++ ++ L+LYRGRNY
Sbjct: 189 HNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKL 280
DPK RP IPLMLW+P+ P+YP+++K DGL+ +ETK MR +GL P L KL
Sbjct: 249 DPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKL 300
>gi|14596153|gb|AAK68804.1| Unknown protein [Arabidopsis thaliana]
Length = 284
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/216 (55%), Positives = 155/216 (71%), Gaps = 12/216 (5%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA- 118
PSS + SDLPFDF++SY+E+ V PIG REPK +SPFGP RLDR+WTG A A
Sbjct: 70 PSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPK-YSPFGPDRLDREWTGVCAPAV 128
Query: 119 -PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELVERYRHSDCARQINLGKWGVT 168
PK VD V + EE+R +V G LTE E LVE + + RQ+NLG+ G+T
Sbjct: 129 NPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLT 188
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
HNML+D++NHWK AEAVR+KCLGVPTLDM NV FHLE+K+ G+++ ++ L+LYRGRNY
Sbjct: 189 HNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEET 264
DPK RP IPLMLW+P+ P+YP+++K DGL+ +ET
Sbjct: 249 DPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDET 284
>gi|413921150|gb|AFW61082.1| hypothetical protein ZEAMMB73_173916 [Zea mays]
Length = 222
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/139 (74%), Positives = 114/139 (82%), Gaps = 3/139 (2%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +P PIGFREP RFSPFGPGRLDR W GT A + D
Sbjct: 71 PAHSDLPFDFRYSYSETDPTWRPIGFREPTRFSPFGPGRLDRPWDGTAAA--RVGDYASG 128
Query: 128 EEE-RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVR 186
+E R VLG+PL+EEE+A LVERYRHSDC+RQINLGK GVTHNMLDD+HNHWKRAEAVR
Sbjct: 129 DERIREEVLGEPLSEEEVAALVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAEAVR 188
Query: 187 IKCLGVPTLDMDNVCFHLE 205
IKCLGVPTLDMDN+CFHLE
Sbjct: 189 IKCLGVPTLDMDNICFHLE 207
>gi|147799432|emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
Length = 393
Score = 200 bits (509), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 141/238 (59%), Gaps = 34/238 (14%)
Query: 73 LPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP-----KEVDRV-- 125
+PF+ +YSY+E P V+PI REP F PFGP + R WTG L P KE D
Sbjct: 150 VPFELRYSYTET-PKVKPIALREPP-FLPFGPDTMPRPWTGRAPLPPSKKKLKEFDSFQL 207
Query: 126 -----------------------RFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R+ R +LG+PLTEEEI ELV+ S RQ+N+
Sbjct: 208 PPPGKKRVKPVQAPGPFLPGSGPRYVRSREEILGEPLTEEEIKELVQGCVKSK--RQLNM 265
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNMLD++H HWKR +IKC GV T+DMDNV LEEK+GGK+IY +L L
Sbjct: 266 GRDGLTHNMLDNIHAHWKRRRVCKIKCKGVCTVDMDNVRQQLEEKTGGKVIYGKGGVLFL 325
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKL 280
+RGRNY+ ++RP PLMLW+P P+YP++V+ +GLT EE MR +G P+ KL
Sbjct: 326 FRGRNYNYRNRPRFPLMLWKPVTPVYPRLVQRAPEGLTLEEAGAMRKKGRKLIPICKL 383
>gi|297739073|emb|CBI28562.3| unnamed protein product [Vitis vinifera]
Length = 422
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 129/213 (60%), Gaps = 38/213 (17%)
Query: 131 RNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCL 190
R +LG+PL++ EI LV+ Y + RQ+NLG+ G+THNML+ +H+HWKR ++ C
Sbjct: 55 REEILGEPLSKAEIRMLVKPYLSHN--RQVNLGRDGLTHNMLELIHSHWKRQRVCKVWCK 112
Query: 191 GVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPK 250
GVPT+DMDNVC HLEEK+GGKII+R ++ L+RGRNY+
Sbjct: 113 GVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYN--------------------- 151
Query: 251 VVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHV 310
+ N G + P+ +L +NGVY+++V VR+AF+ +V++DC +
Sbjct: 152 ---------------YLANEGENLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGM 196
Query: 311 GTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
+D KKIG KL++ VPCV + F DEQI+ WRG
Sbjct: 197 HASDYKKIGAKLKESVPCVLLSFDDEQILTWRG 229
>gi|414884469|tpg|DAA60483.1| TPA: CRS2-associated factor 1, Precursor [Zea mays]
Length = 392
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 80/107 (74%)
Query: 239 MLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFK 298
MLW+P AP+YP++V V GLT +E EMR RG PP+ KL +NGVY N+V +VREAF+
Sbjct: 1 MLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFE 60
Query: 299 TEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
++VR+DCS + +DC+KIG KL+DLVPC+ + F+ E I++WRG +
Sbjct: 61 ACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWRGSD 107
>gi|147771140|emb|CAN74182.1| hypothetical protein VITISV_034260 [Vitis vinifera]
Length = 306
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 15/146 (10%)
Query: 198 DNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVAD 257
D + H+E K+GGKII+R ++ L+RGRNY+ + RP P+MLW+P AP+YPK+++ +
Sbjct: 12 DQLIMHME-KTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPE 70
Query: 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKK 317
GLT E E+R +G + P+ +L +NGVY+++V VR+AF+ +V++DC + +D KK
Sbjct: 71 GLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKK 130
Query: 318 IGVKLRDLVPCVPILFKDEQIILWRG 343
IG KL+ I+ WRG
Sbjct: 131 IGAKLK--------------ILTWRG 142
>gi|147780327|emb|CAN67999.1| hypothetical protein VITISV_025803 [Vitis vinifera]
Length = 331
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 34/179 (18%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL---------------- 117
PF+F++SYSE P +P+ REP F PF P + R WTG L
Sbjct: 103 PFEFQFSYSET-PKAKPLAIREPA-FLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 160
Query: 118 --APKEVDRV---------RFEEE---RNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
K V RV +F E R +LG+PL++ EI LV+ Y + RQ+NLG
Sbjct: 161 PPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHN--RQVNLG 218
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
+ G+THNML+ +H+HWKR +++C GVPT+DMDNVC HLE + I+ + ++L+
Sbjct: 219 RDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEHHTYINAIHALVILVLI 277
>gi|414884471|tpg|DAA60485.1| TPA: hypothetical protein ZEAMMB73_919812, partial [Zea mays]
Length = 250
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 85/163 (52%), Gaps = 35/163 (21%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTEA-PRARPVALREAP-FMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R +LG+PLT+EE++ELV+ S RQ+N+
Sbjct: 149 APGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSK--RQLNM 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLE 205
G+ G+THNML+++H+HWKR +IKC GV T+DMDN+C LE
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLE 249
>gi|449515235|ref|XP_004164655.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 1053
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 24/190 (12%)
Query: 50 NPRTQQNPPVPSS-NTNKLPLKSDLP-------FDFKYSYSENNPAVEPIGFREPKRFSP 101
PRT +P PS+ +PL + LP D +S EN P EP KRF
Sbjct: 95 TPRTLPDPNSPSAPGAIFVPLPNQLPKYRVGHTIDSSWSTPEN-PVPEPGTGTAIKRFHE 153
Query: 102 FGPGRLDRKWTGTTALAPKEVDRVRFE--EERNRVLGD-PLTEEEIAELVERYRHSDCAR 158
G + +KW K+ D VR + EER L + LTEEE+ L R +
Sbjct: 154 L-RGEV-QKW--------KKRDGVREKKREERAPSLAELSLTEEELGRL--RTIGIRLKK 201
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++N+GK G+T +++ +H W+R+E V+I C + L+M LE K+GG +++R+ +
Sbjct: 202 KLNVGKAGITEGIVNTIHEFWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGS 261
Query: 219 ILLLYRGRNY 228
++LYRG NY
Sbjct: 262 KIILYRGPNY 271
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 125 VRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWK 180
+ EEE L P ++E + ERY ++ LG+ GV ++++H HWK
Sbjct: 583 AKLEEEEK--LQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWK 640
Query: 181 RAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
E V+I + +V LE +SGG ++ + ++++RG+NY
Sbjct: 641 YRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNY 692
>gi|449459492|ref|XP_004147480.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 1032
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 23/172 (13%)
Query: 67 LPLKSDLP-------FDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
+PL + LP D +S EN P EP KRF G + +KW
Sbjct: 93 VPLPNQLPKYRVGHTIDSSWSMPEN-PVPEPGTGTAIKRFHEL-RGEV-QKW-------- 141
Query: 120 KEVDRVRFE--EERNRVLGD-PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLH 176
K+ D VR + EER L + LTEEE+ L R +++N+GK G+T +++ +H
Sbjct: 142 KKRDGVREKKREERAPSLAELSLTEEELGRL--RTIGIRLKKKLNVGKAGITEGIVNTIH 199
Query: 177 NHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+W+R+E V+I C + L+M LE K+GG +++R+ + ++LYRG NY
Sbjct: 200 EYWRRSEVVKIACEDLCRLNMKRTHDLLERKTGGIVVWRSGSKIILYRGPNY 251
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 125 VRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWK 180
+ EEE L P ++E + ERY ++ LG+ GV ++++H HWK
Sbjct: 562 AKLEEEEK--LQQPEIDKEGITVEERYMLKKVGLRMKPFLLLGRRGVFDGTVENMHLHWK 619
Query: 181 RAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
E V+I + +V LE +SGG ++ + ++++RG+NY
Sbjct: 620 YRELVKIITNERSFKTVHDVARTLEAESGGILVAVERVKRSFAIIIFRGKNY 671
>gi|225452572|ref|XP_002275511.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1044
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 120 KEVDR----VRFEEERNRVLGD-PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDD 174
KEV R VR E+ER L + L EEE+ L + +++ +GK G+T +++
Sbjct: 162 KEVKREKKLVRKEDERAPTLAELTLPEEELRRL--KGIGIQIRKKLKVGKAGITEGIVNG 219
Query: 175 LHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+H W+RAE V+I+C + L+M LE K+GG +I+R+ + ++LYRG NY
Sbjct: 220 IHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANY 273
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ G+ ++++H HWK E V+I G D+ V LE +SGG ++
Sbjct: 627 LGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKG 686
Query: 218 NILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFE-ETKEMRNRGLHSPP 276
+++YRG+NY RP A + P+ + N + L E + + LH
Sbjct: 687 YAIIMYRGKNY---KRP----------ASLRPQTLLNKREALKRSLEAQRRESLKLH--- 730
Query: 277 LMKLTRN 283
+++LTRN
Sbjct: 731 VLRLTRN 737
>gi|296087726|emb|CBI34982.3| unnamed protein product [Vitis vinifera]
Length = 1028
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 120 KEVDR----VRFEEERNRVLGD-PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDD 174
KEV R VR E+ER L + L EEE+ L + +++ +GK G+T +++
Sbjct: 162 KEVKREKKLVRKEDERAPTLAELTLPEEELRRL--KGIGIQIRKKLKVGKAGITEGIVNG 219
Query: 175 LHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+H W+RAE V+I+C + L+M LE K+GG +I+R+ + ++LYRG NY
Sbjct: 220 IHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANY 273
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 21/127 (16%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ G+ ++++H HWK E V+I G D+ V LE +SGG ++
Sbjct: 627 LGRRGIFDGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKG 686
Query: 218 NILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFE-ETKEMRNRGLHSPP 276
+++YRG+NY RP A + P+ + N + L E + + LH
Sbjct: 687 YAIIMYRGKNY---KRP----------ASLRPQTLLNKREALKRSLEAQRRESLKLH--- 730
Query: 277 LMKLTRN 283
+++LTRN
Sbjct: 731 VLRLTRN 737
>gi|147852955|emb|CAN81271.1| hypothetical protein VITISV_006146 [Vitis vinifera]
Length = 1399
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 7/114 (6%)
Query: 120 KEVDR----VRFEEERNRVLGD-PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDD 174
KEV R VR E+ER L + L EEE+ L + +++ +GK G+T +++
Sbjct: 354 KEVKREKKLVRKEDERAPTLAELTLPEEELRRL--KGIGIQIRKKLKVGKAGITEGIVNG 411
Query: 175 LHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+H W+RAE V+I+C + L+M LE K+GG +I+R+ + ++LYRG NY
Sbjct: 412 IHERWRRAEVVKIRCEDICKLNMKRTHDILERKTGGLVIWRSGSYIILYRGANY 465
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Query: 114 TTALAPKE-VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN----LGKWGVT 168
+ AL KE +++ E E ++ P ++E ERY ++ LG+ G+
Sbjct: 949 SMALEKKERAEKLLAELEEAQIPQQPEIDKEGITEEERYMLRKVGLRMKPFLLLGRRGIF 1008
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYR 224
++++H HWK E V+I G D+ V LE +SGG ++ +++YR
Sbjct: 1009 DGTVENMHLHWKYRELVKIISNGRSIEDIHGVARTLEAESGGILVAVERVSKGYAIIMYR 1068
Query: 225 GRNY 228
G+NY
Sbjct: 1069 GKNY 1072
>gi|356573410|ref|XP_003554854.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1028
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 10/126 (7%)
Query: 112 TGTTALAPKEVDR---VRFEEERNR-----VLGD-PLTEEEIAELVERYRHSDCARQINL 162
+G AL+ EV R +R EE R R L + L + EI L S +++ L
Sbjct: 112 SGIAALSKSEVRRQKKLRAEESRRRKELVPTLAELSLPDSEIRRLTT-LGFSTTKKKVRL 170
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
K G+T ++D +H WKR+E VR+ C + DM LE K+GG +++R+ ++L
Sbjct: 171 AKAGITEQIVDVIHERWKRSEVVRVFCEELSRDDMRRTHDLLERKTGGLVVWRSGTKIIL 230
Query: 223 YRGRNY 228
YRG +Y
Sbjct: 231 YRGADY 236
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I C G ++ + LE +SGG ++ R
Sbjct: 584 LGRRGVFDGTVENMHLHWKYRELVKIICNG-SLEEVHQIALTLEAESGGILVAVERVRKG 642
Query: 218 NILLLYRGRNYD 229
+++YRG+NY
Sbjct: 643 FAIIVYRGKNYS 654
>gi|449432614|ref|XP_004134094.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
gi|449504099|ref|XP_004162252.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 874
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +G GVT ++D +H WK +E VR+K LG P L+M + LE K+GG +I+R+
Sbjct: 255 KMKIGGGGVTQAVVDVIHEKWKSSEIVRLKILGPPALNMKRMHEILERKTGGLVIWRSGT 314
Query: 219 ILLLYRGRNYDPKDRP 234
L LYRG +Y+ + P
Sbjct: 315 SLSLYRGVSYELPEAP 330
>gi|413918579|gb|AFW58511.1| CFM2 [Zea mays]
Length = 1039
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ AE V+++C V ++M LE K+GG +I+R+
Sbjct: 160 KRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG 219
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 220 STIILYRGTNY 230
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 136 GDPLTEEEIAELV---ERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWKRAEAVRIK 188
PL++ E+ E + ERY ++ LG+ GV ++++H HWK E V+I
Sbjct: 616 ASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKII 675
Query: 189 CLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
C D++ LE +SGG ++ + +++YRG+NY
Sbjct: 676 CKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 719
>gi|154986385|gb|ABS89146.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 668
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ AE V+++C V ++M LE K+GG +I+R+
Sbjct: 147 KRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG 206
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 207 STIILYRGTNY 217
>gi|413918578|gb|AFW58510.1| CFM2 alternative polyadenylation form 1 [Zea mays]
Length = 681
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ AE V+++C V ++M LE K+GG +I+R+
Sbjct: 160 KRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG 219
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 220 STIILYRGTNY 230
>gi|154986383|gb|ABS89145.1| CFM2 [Zea mays]
Length = 942
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ AE V+++C V ++M LE K+GG +I+R+
Sbjct: 63 KRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG 122
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 123 STIILYRGTNY 133
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 136 GDPLTEEEIAELV---ERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWKRAEAVRIK 188
PL++ E+ E + ERY ++ LG+ GV ++++H HWK E V+I
Sbjct: 519 ASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKII 578
Query: 189 CLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
C D++ LE +SGG ++ + +++YRG+NY
Sbjct: 579 CKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 622
>gi|326497411|dbj|BAK05795.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1070
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK GVT +++ +H W+ AE V+I+C + ++M LE K+GG +I+R+
Sbjct: 159 KRLKVGKPGVTEGIVNGIHERWRNAELVKIRCDDISAMNMRRTHEVLERKTGGLVIWRSG 218
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 219 STIILYRGTNY 229
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 114 TTALAPKEVDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN----LGKWGVTH 169
+ AL KE EE E+ ERY Q+ LG+ GV
Sbjct: 619 SQALTEKEKAEKLLEELEKASRSSKAETREVISEEERYMLRKVGLQMKPFLLLGRRGVFD 678
Query: 170 NMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYRG 225
++++H HWK E V+I C D+ LE +SGG ++ + +++YRG
Sbjct: 679 GTIENMHLHWKYRELVKIICKEHSMEDVTYAARTLEAESGGILVAVERVSKGHAIIMYRG 738
Query: 226 RNY 228
+NY
Sbjct: 739 KNY 741
>gi|154986387|gb|ABS89147.1| CFM2 alternative polyadenylation form 2 [Zea mays]
Length = 783
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ AE V+++C V ++M LE K+GG +I+R+
Sbjct: 153 KRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG 212
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 213 STIILYRGTNY 223
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 136 GDPLTEEEIAELV---ERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWKRAEAVRIK 188
PL++ E+ E + ERY ++ LG+ GV ++++H HWK E V+I
Sbjct: 609 ASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRGVFDGTIENMHLHWKYRELVKII 668
Query: 189 CLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
C D++ LE +SGG ++ + +++YRG+NY
Sbjct: 669 CKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIVYRGKNY 712
>gi|242076096|ref|XP_002447984.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
gi|241939167|gb|EES12312.1| hypothetical protein SORBIDRAFT_06g019250 [Sorghum bicolor]
Length = 800
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ AE V+++C V ++M LE K+GG +I+R+
Sbjct: 162 KRLKVGKAGITEGIVNGIHERWRNAEVVKLRCEDVWAMNMRRTHEILERKTGGLVIWRSG 221
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 222 STIILYRGTNY 232
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 14/126 (11%)
Query: 114 TTALAPKEVDRVRFEEERNRVLGDPLTEEEIAELV---ERYRHSDCARQIN----LGKWG 166
+ A+A KE EE PL++ E+ E + ERY ++ LG+ G
Sbjct: 602 SQAIAEKERAEKLLEELEK---ASPLSKAEVRETISEDERYMLRKVGLKMKQFLLLGRRG 658
Query: 167 VTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINILLL 222
V ++++H HWK E V+I C D++ LE +SGG ++ + +++
Sbjct: 659 VFDGTIENMHLHWKYRELVKIICKEHRLEDVEYAARTLEAESGGILVAVEKVSKGHAIIV 718
Query: 223 YRGRNY 228
YRG+NY
Sbjct: 719 YRGKNY 724
>gi|125549065|gb|EAY94887.1| hypothetical protein OsI_16687 [Oryza sativa Indica Group]
Length = 893
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 32/216 (14%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +G GVT +++ +H W+ E V+++ G P+L+M LEE++GG +I+R+
Sbjct: 358 RMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIWRSGR 417
Query: 219 ILLLYRGRNYD--------------------------PKDRPVIPLMLWRPYAP--IYPK 250
++LYRG NY+ P D ++P ++ P + P
Sbjct: 418 SVVLYRGMNYNLRCVQSYTQTTELGPRYKDWSGRGPIPVDADLLPGVVPGYKTPFRLLPY 477
Query: 251 VVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHV 310
+VK+ L +E +R + P L RN + + + + ++ + ++
Sbjct: 478 MVKST---LRNKEMTALRRLARQTAPHFALGRNREHQGLATAIVKLWEKSSIAKIAIKRG 534
Query: 311 GTNDCK-KIGVKLRDLVPCVPILFKDEQIILWRGKE 345
N C ++ ++R L V + E I+ +RG +
Sbjct: 535 VPNTCNDRMAEEIRKLTGGVLLSRNKEYIVFYRGND 570
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI 219
+ LG+ V + ++H HWK E V++ G + ++ LE +SGG +I +
Sbjct: 715 LMLGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTT 774
Query: 220 ----LLLYRGRNY 228
++LYRG+NY
Sbjct: 775 KGYAIILYRGKNY 787
>gi|116310121|emb|CAH67138.1| OSIGBa0130P02.2 [Oryza sativa Indica Group]
Length = 1048
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +GK GVT +++ +H W+ AE V+I+C V ++M LE K+GG +I+R+ +
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 219 ILLLYRGRNY 228
++LYRG +Y
Sbjct: 219 TIILYRGTDY 228
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 50 NPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDR 109
NP+ + P N++KL + +D+ D Y + + + + + F R
Sbjct: 525 NPKLNFDKSTPQ-NSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFTQNVEAR 583
Query: 110 KWTGTTALAPKEVDRVRFEE-ERNRVLGDPLTEEEIAELVERYRHSDCARQIN----LGK 164
+ A+A KE EE E + T E I+E ERY ++ LG+
Sbjct: 584 L---SQAIAEKEKTEKLIEELEMSSEPSRAETREVISE-EERYMLRKVGLKMKSFLLLGR 639
Query: 165 WGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINIL 220
GV ++++H HWK E V+I C D++ LE +SGG ++ + +
Sbjct: 640 RGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAI 699
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 700 IIYRGKNY 707
>gi|21741981|emb|CAD41031.1| OSJNBa0060P14.12 [Oryza sativa Japonica Group]
gi|32492164|emb|CAE04823.1| OSJNBb0048E02.3 [Oryza sativa Japonica Group]
Length = 1012
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +GK GVT +++ +H W+ AE V+I+C V ++M LE K+GG +I+R+ +
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 219 ILLLYRGRNY 228
++LYRG +Y
Sbjct: 219 TIILYRGTDY 228
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 50 NPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDR 109
NP+ + P N++KL + +D+ D Y + + + + + F R
Sbjct: 489 NPKLNFDKSTPQ-NSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFAQNVEAR 547
Query: 110 KWTGTTALAPKE-----VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN--- 161
+ A+A KE ++ + E +R + EE ERY ++
Sbjct: 548 L---SQAIAEKEKTEKLIEELEMSSEPSRAETREVISEE-----ERYMLRKVGLKMKSFL 599
Query: 162 -LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRN 216
LG+ GV ++++H HWK E V+I C D++ LE +SGG ++
Sbjct: 600 LLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSK 659
Query: 217 INILLLYRGRNY 228
+ +++YRG+NY
Sbjct: 660 AHAIIIYRGKNY 671
>gi|297602873|ref|NP_001053020.2| Os04g0464800 [Oryza sativa Japonica Group]
gi|255675534|dbj|BAF14934.2| Os04g0464800 [Oryza sativa Japonica Group]
Length = 1042
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 46/70 (65%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +GK GVT +++ +H W+ AE V+I+C V ++M LE K+GG +I+R+ +
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 219 ILLLYRGRNY 228
++LYRG +Y
Sbjct: 219 TIILYRGTDY 228
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 14/188 (7%)
Query: 50 NPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDR 109
NP+ + P N++KL + +D+ D Y + + + + + F R
Sbjct: 489 NPKLNFDKSTPQ-NSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFAQNVEAR 547
Query: 110 KWTGTTALAPKEVDRVRFEE-ERNRVLGDPLTEEEIAELVERYRHSDCARQIN----LGK 164
+ A+A KE EE E + T E I+E ERY ++ LG+
Sbjct: 548 L---SQAIAEKEKTEKLIEELEMSSEPSRAETREVISE-EERYMLRKVGLKMKSFLLLGR 603
Query: 165 WGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNINIL 220
GV ++++H HWK E V+I C D++ LE +SGG ++ + +
Sbjct: 604 RGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSKAHAI 663
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 664 IIYRGKNY 671
>gi|302805129|ref|XP_002984316.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
gi|300148165|gb|EFJ14826.1| hypothetical protein SELMODRAFT_120007 [Selaginella moellendorffii]
Length = 692
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI 219
I +G GVT ++ D+H W++ E V+I+C G ++M LE K+GG +++R +
Sbjct: 99 IKVGYLGVTKAVVQDIHRRWQKCEVVKIQCDGPAAINMKQTHDELETKTGGLVVWRTGGM 158
Query: 220 LLLYRGRNY 228
+LYRG+ Y
Sbjct: 159 AILYRGKGY 167
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 83 ENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRVLGDPLTEE 142
+ N AV + RE KR + +K + E + E R+R + +TEE
Sbjct: 434 DRNAAVVALKVREQKRLEAKLAAAISKKRRADLQIVKLERSLLLSEHPRDR---ETITEE 490
Query: 143 EIAELVERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
E RY +++ +G+ GV +++++H HWK E V++
Sbjct: 491 E------RYMFKKLGLRMDAFLLIGRRGVFDGVIENMHLHWKHRELVKLILKEKDKAIAL 544
Query: 199 NVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
V LE +SGG ++ +++YRG+NY
Sbjct: 545 EVAKMLEIESGGILVGVVTTSKGQAIIVYRGKNY 578
>gi|255552728|ref|XP_002517407.1| conserved hypothetical protein [Ricinus communis]
gi|223543418|gb|EEF44949.1| conserved hypothetical protein [Ricinus communis]
Length = 1009
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 139 LTEEEIAELVERYRHSDCA--RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLD 196
L+EEE+ R R A R++ +GK G+T +++ +H W+R+E V+I C + ++
Sbjct: 158 LSEEEL----RRLRRIGIAEKRKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMN 213
Query: 197 MDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
M LE K+GG +++R + ++LYRG NY
Sbjct: 214 MKRTHDLLERKTGGLVVWRAGSKIVLYRGVNY 245
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
+G+ GV ++++H HWK E V+I C + V LE +SGG ++
Sbjct: 600 IGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVHEVAQSLEAESGGILVAVERVSKG 659
Query: 218 NILLLYRGRNYDPKDRPVI 236
+++YRG+NY RP +
Sbjct: 660 YAIVVYRGKNY---QRPAL 675
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 257 DGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCK 316
+G+T EE +R GL P + + R GV+ + + +K E+V++ C N
Sbjct: 577 EGITDEERYMLRKVGLKMKPFLLIGRRGVFDGTIENMHLHWKYRELVKIICKERSLNAVH 636
Query: 317 KIGVKLR----DLVPCVPILFKDEQIILWRGK 344
++ L ++ V + K I+++RGK
Sbjct: 637 EVAQSLEAESGGILVAVERVSKGYAIVVYRGK 668
>gi|357167767|ref|XP_003581323.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 1053
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK GVT +++ +H W+ E V+I+C V ++M LE K+GG +I+R+
Sbjct: 157 KRLKVGKPGVTEGIVNGIHERWRNVELVKIRCDDVSAMNMRRTHEILERKTGGLVIWRSG 216
Query: 218 NILLLYRGRNY 228
+ ++LYRG NY
Sbjct: 217 STIILYRGTNY 227
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I C D++ LE +SGG ++
Sbjct: 657 LGRRGVFDGTIENMHLHWKYRELVKIICKEHSMKDVEYAARTLESQSGGILVAVERVSKG 716
Query: 218 NILLLYRGRNY 228
+ +++YRG+NY
Sbjct: 717 HAIIMYRGKNY 727
>gi|255551945|ref|XP_002517017.1| conserved hypothetical protein [Ricinus communis]
gi|223543652|gb|EEF45180.1| conserved hypothetical protein [Ricinus communis]
Length = 773
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%)
Query: 166 GVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRG 225
GVT ++D +H+ WK +E VR+K G P L+M + LE K+GG +I+R+ + LYRG
Sbjct: 130 GVTQEVVDSIHDRWKTSEIVRVKVEGAPALNMRRMHEILERKTGGLVIWRSGTSVSLYRG 189
Query: 226 RNYD 229
+Y+
Sbjct: 190 VSYE 193
>gi|224111046|ref|XP_002315729.1| predicted protein [Populus trichocarpa]
gi|222864769|gb|EEF01900.1| predicted protein [Populus trichocarpa]
Length = 894
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILL 221
+G GVT ++D +H+ WK +E R+K G P L+M + LE K+GG +I+R+ +
Sbjct: 233 VGGRGVTQEVVDAIHDKWKTSEIARVKVEGAPALNMKRMHEILENKTGGLVIWRSGATVS 292
Query: 222 LYRGRNYD 229
LYRG +Y+
Sbjct: 293 LYRGVSYE 300
>gi|356576487|ref|XP_003556362.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 835
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+ +G+ GVT ++D +H WK +E VR+K G L+M + LE K+GG +I+R+ N
Sbjct: 229 KTRIGRSGVTQAVVDKIHERWKTSEIVRLKFEGEAALNMKRMHEILERKTGGLVIWRSGN 288
Query: 219 ILLLYRGRNYD 229
+ LYRG +Y+
Sbjct: 289 SVSLYRGVSYE 299
>gi|222616258|gb|EEE52390.1| hypothetical protein OsJ_34482 [Oryza sativa Japonica Group]
Length = 560
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 145 AELVERYRHSD--CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCF 202
AEL R RH+ +I +G GVT +++ + + W+ E VRIK G P L+M F
Sbjct: 25 AEL-RRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMR--LF 81
Query: 203 H--LEEKSGGKIIYRNINILLLYRGRNYD 229
H LE K+GG +I+R+ + LYRG YD
Sbjct: 82 HEILERKTGGLVIWRSGTSVSLYRGVAYD 110
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I D+ + LE +SGG ++
Sbjct: 459 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKG 518
Query: 218 NILLLYRGRNY 228
++++RG++Y
Sbjct: 519 YAIVVFRGKDY 529
>gi|30678323|ref|NP_186786.2| CRM family member 2 [Arabidopsis thaliana]
gi|22531018|gb|AAM97013.1| unknown protein [Arabidopsis thaliana]
gi|37202002|gb|AAQ89616.1| At3g01370 [Arabidopsis thaliana]
gi|332640136|gb|AEE73657.1| CRM family member 2 [Arabidopsis thaliana]
Length = 1011
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 45/71 (63%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ E V+I C + ++M LE K+GG +I+R+
Sbjct: 183 KKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRSG 242
Query: 218 NILLLYRGRNY 228
+ +LLYRG NY
Sbjct: 243 SKILLYRGVNY 253
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI---- 217
LG+ GV ++++H HWK E V+I C V LE +SGG ++ +
Sbjct: 600 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 659
Query: 218 NILLLYRGRNYD 229
+++YRG+NY+
Sbjct: 660 YAIIVYRGKNYE 671
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 257 DGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCK 316
+G+T +E +R GL P + L R GV+ + + +K E+V++ C+
Sbjct: 577 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 636
Query: 317 KIGVKLR----DLVPCVPILFKDEQIILWRGK 344
K+ L ++ V ++ K II++RGK
Sbjct: 637 KVAEILEAESGGILVAVEMVSKGYAIIVYRGK 668
>gi|6692258|gb|AAF24608.1|AC010870_1 unknown protein [Arabidopsis thaliana]
Length = 1020
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%)
Query: 157 ARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRN 216
+++ +GK G+T +++ +H W+ E V+I C + ++M LE K+GG +I+R+
Sbjct: 182 TKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDVLETKTGGLVIWRS 241
Query: 217 INILLLYRGRNY 228
+ +LLYRG NY
Sbjct: 242 GSKILLYRGVNY 253
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI---- 217
LG+ GV ++++H HWK E V+I C V LE +SGG ++ +
Sbjct: 609 LGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESGGILVAVEMVSKG 668
Query: 218 NILLLYRGRNYD 229
+++YRG+NY+
Sbjct: 669 YAIIVYRGKNYE 680
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 257 DGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCK 316
+G+T +E +R GL P + L R GV+ + + +K E+V++ C+
Sbjct: 586 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 645
Query: 317 KIGVKLR----DLVPCVPILFKDEQIILWRGK 344
K+ L ++ V ++ K II++RGK
Sbjct: 646 KVAEILEAESGGILVAVEMVSKGYAIIVYRGK 677
>gi|302768979|ref|XP_002967909.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
gi|300164647|gb|EFJ31256.1| hypothetical protein SELMODRAFT_61058 [Selaginella moellendorffii]
Length = 557
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I + K G+T N++ +H W+ +E V++KC ++M V LE+++GG +I+R
Sbjct: 51 RIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWRAGT 110
Query: 219 ILLLYRGRNYD--PKDR 233
L++YRG++Y PK+R
Sbjct: 111 ALVIYRGKDYAGPPKER 127
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV +++++H HWK E V++ G +D+++ +E +SGG +I
Sbjct: 459 LGRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKG 518
Query: 218 NILLLYRGRNY 228
+ L YRG+NY
Sbjct: 519 QVFLYYRGKNY 529
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%)
Query: 263 ETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKL 322
E + +R +H+ +K+ + G+ NVV + + ++T E+V+L C + +K+ +L
Sbjct: 37 ELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEEL 96
Query: 323 RDLVPCVPILFKDEQIILWRGKEQA 347
+ I ++++RGK+ A
Sbjct: 97 EKRTGGLVIWRAGTALVIYRGKDYA 121
>gi|77551737|gb|ABA94534.1| CRS1/YhbY domain containing protein, expressed [Oryza sativa
Japonica Group]
Length = 886
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 7/89 (7%)
Query: 145 AELVERYRHSD--CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCF 202
AEL R RH+ +I +G GVT +++ + + W+ E VRIK G P L+M F
Sbjct: 179 AEL-RRLRHAGMRLKSRIKVGGAGVTREIVERIRDRWRNDEVVRIKVTGTPALNMR--LF 235
Query: 203 H--LEEKSGGKIIYRNINILLLYRGRNYD 229
H LE K+GG +I+R+ + LYRG YD
Sbjct: 236 HEILERKTGGLVIWRSGTSVSLYRGVAYD 264
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I D+ + LE +SGG ++
Sbjct: 613 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKG 672
Query: 218 NILLLYRGRNY 228
++++RG++Y
Sbjct: 673 YAIVVFRGKDY 683
>gi|357496109|ref|XP_003618343.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355493358|gb|AES74561.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 1096
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
LT+ EI L R ++I +GK GVT +++ +H W+R+E VR+ C + ++M
Sbjct: 151 LTDGEILRL--RELGYQMKQKIKVGKAGVTEGIVNGIHERWRRSEVVRVVCEDLCRINMK 208
Query: 199 NVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
LE K+GG +++R+ + ++LYRG +Y
Sbjct: 209 RTHDILERKTGGLVVWRSGSKIILYRGIDY 238
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 17/134 (12%)
Query: 107 LDRKWTGTTALAPKEVDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN----L 162
L++K L E D EEE ++ + +TEEE RY ++ L
Sbjct: 528 LEKKEKAEKLLESLEKDESLQEEEIDK---ESITEEE------RYMLRRIGLKMKPFLLL 578
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNIN--- 218
G+ GV ++++H HWK E V+I C LE +SGG ++ +N
Sbjct: 579 GRRGVFDGTVENMHLHWKYRELVKIICNQESVEYAHQTARTLEAESGGILVAVERVNKGY 638
Query: 219 ILLLYRGRNYDPKD 232
+++YRG+NY D
Sbjct: 639 AIIVYRGKNYSRPD 652
>gi|302761182|ref|XP_002964013.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
gi|300167742|gb|EFJ34346.1| hypothetical protein SELMODRAFT_20706 [Selaginella moellendorffii]
Length = 555
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I + K G+T N++ +H W+ +E V++KC ++M V LE+++GG +I+R
Sbjct: 52 RIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEELEKRTGGLVIWRAGA 111
Query: 219 ILLLYRGRNYD--PKDR 233
L++YRG++Y PK+R
Sbjct: 112 ALVIYRGKDYAGPPKER 128
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNIN 218
G+ GV +++++H HWK E V++ G +D+++ +E +SGG +I
Sbjct: 458 GRRGVYSGIIENMHLHWKYRELVKVVYKGKDRMDIEDTAKMIECESGGILIGIYPVSKGQ 517
Query: 219 ILLLYRGRNY 228
+ L YRG+NY
Sbjct: 518 VFLYYRGKNY 527
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%)
Query: 263 ETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKL 322
E + +R +H+ +K+ + G+ NVV + + ++T E+V+L C + +K+ +L
Sbjct: 38 ELRRLRTMIIHTKERIKVKKLGITRNVVQAIHQKWRTSEIVKLKCDQEVAMNMRKVHEEL 97
Query: 323 RDLVPCVPILFKDEQIILWRGKEQA 347
+ I ++++RGK+ A
Sbjct: 98 EKRTGGLVIWRAGAALVIYRGKDYA 122
>gi|242044486|ref|XP_002460114.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
gi|241923491|gb|EER96635.1| hypothetical protein SORBIDRAFT_02g022940 [Sorghum bicolor]
Length = 962
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G GVT ++++ +H WK E V+++ G P+L+M LE+++GG +I+R+
Sbjct: 371 RIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVIWRSGR 430
Query: 219 ILLLYRGRNYD 229
++LYRG NY+
Sbjct: 431 SVVLYRGMNYN 441
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN--- 218
LG+ V + ++H HWK E V+I G + ++ LE +S G +I +
Sbjct: 785 LGRREVFDGTVQNMHLHWKHRELVKIIVRGKSFAQVKHIAISLEAESEGVLISLDKTSKG 844
Query: 219 -ILLLYRGRNY 228
++ YRG+NY
Sbjct: 845 YAIIFYRGKNY 855
>gi|357441009|ref|XP_003590782.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355479830|gb|AES61033.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 838
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILL 221
+G GVT +D +H WK +E VR+K G L+M + LE+K+GG +I+R+ N +
Sbjct: 232 IGGGGVTQAAVDKIHERWKTSEIVRLKFEGDAALNMKRMHEILEKKTGGLVIWRSGNSVS 291
Query: 222 LYRGRNY-DP 230
LYRG +Y DP
Sbjct: 292 LYRGVSYKDP 301
>gi|414885161|tpg|DAA61175.1| TPA: hypothetical protein ZEAMMB73_652631 [Zea mays]
Length = 964
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 47/71 (66%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G GVT ++++ +H WK E V+++ G P+L+M LE+++GG +I+R+
Sbjct: 375 RIKVGPGGVTQDIVESIHRKWKVDEVVKMRFEGPPSLNMKRTHDLLEDRTGGVVIWRSGR 434
Query: 219 ILLLYRGRNYD 229
++LYRG NY+
Sbjct: 435 SVVLYRGMNYN 445
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN--- 218
LG+ V + ++H HWK E V+I G ++ LE +S G +I +
Sbjct: 789 LGRREVFDGTVQNMHLHWKHRELVKIVVRGKSFAQAKHIAISLEAESEGVLISLDKTTKG 848
Query: 219 -ILLLYRGRNY 228
+++ YRG+NY
Sbjct: 849 YVIIFYRGKNY 859
>gi|449529423|ref|XP_004171699.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like, partial [Cucumis sativus]
Length = 789
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G G+T +LD +H WK E V++K G T++M LE ++GG +I+R+ +
Sbjct: 239 RIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGS 298
Query: 219 ILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL----TFEETKEMRNRGLHS 274
+++LYRG Y P Y K + ++ L E RN LH
Sbjct: 299 LIVLYRGMTYHL------------PCVQSYAKQNQAKSNTLDVPNNVESDDITRNEKLH- 345
Query: 275 PPLMKLTRNGVYVNVVAKVREAFKT---EEVVRL-DCSHVGTNDCKKIGVKLRDLVPCVP 330
T G +V+ + KT +E++ L D +H+ +IG + +D C P
Sbjct: 346 ------TTVGTMSTIVSGASKHTKTLSKKELMELSDLNHL----LDEIGPRFKDWSGCEP 395
Query: 331 I 331
+
Sbjct: 396 V 396
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ GV ++++H HWK E V+I G + +V LE +S G +I +
Sbjct: 659 LGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKG 718
Query: 220 --LLLYRGRNY 228
+++YRG+NY
Sbjct: 719 YEVIVYRGKNY 729
>gi|224059986|ref|XP_002300024.1| predicted protein [Populus trichocarpa]
gi|222847282|gb|EEE84829.1| predicted protein [Populus trichocarpa]
Length = 1012
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 46/71 (64%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
R++ +GK G+T +++ +H W+R+E V+I C + ++M LE K+GG +++R
Sbjct: 179 RKLKVGKAGITEGIVNGIHERWRRSEVVKIVCEDLCRMNMKRTHDLLERKTGGLVVWRVG 238
Query: 218 NILLLYRGRNY 228
+ ++LYRG +Y
Sbjct: 239 SKIVLYRGADY 249
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
+G+ GV ++++H HWK E V+I C + V LE +SGG ++
Sbjct: 604 MGERGVFDGTIENMHLHWKYRELVKIICKEKSFQAVQAVARTLEAESGGILVAVEGVSKG 663
Query: 218 NILLLYRGRNY 228
++LYRG+NY
Sbjct: 664 YAIILYRGKNY 674
>gi|449452735|ref|XP_004144114.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 846
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G G+T +LD +H WK E V++K G T++M LE ++GG +I+R+ +
Sbjct: 296 RIEVGVKGITQELLDSIHEKWKVDEVVKLKFEGPLTVNMKRAHEKLENRTGGLVIWRSGS 355
Query: 219 ILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL----TFEETKEMRNRGLHS 274
+++LYRG Y P Y K + ++ L E RN LH
Sbjct: 356 LIVLYRGMTYHL------------PCVQSYAKQNQAKSNTLDVPNNVESDDITRNEKLH- 402
Query: 275 PPLMKLTRNGVYVNVVAKVREAFKT---EEVVRL-DCSHVGTNDCKKIGVKLRDLVPCVP 330
T G +V+ + KT +E++ L D +H+ +IG + +D C P
Sbjct: 403 ------TTVGTMSTIVSGASKHTKTLSKKELMELSDLNHL----LDEIGPRFKDWSGCEP 452
Query: 331 I 331
+
Sbjct: 453 V 453
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ GV ++++H HWK E V+I G + +V LE +S G +I +
Sbjct: 716 LGRRGVYDGTVENMHLHWKFRELVKIIVRGKTLQQVKHVAISLEAESNGVVISLDKTTKG 775
Query: 220 --LLLYRGRNY 228
+++YRG+NY
Sbjct: 776 YEVIVYRGKNY 786
>gi|242071513|ref|XP_002451033.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
gi|241936876|gb|EES10021.1| hypothetical protein SORBIDRAFT_05g022980 [Sorghum bicolor]
Length = 895
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 145 AELVERYRHSDC--ARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCF 202
A + R RH+ + +G GVT +++ + WK E VR+K G P L+M F
Sbjct: 176 AAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMR--LF 233
Query: 203 H--LEEKSGGKIIYRNINILLLYRGRNYD 229
H LE K+GG +I+R+ + LYRG +YD
Sbjct: 234 HEILERKTGGLVIWRSGTSVSLYRGVDYD 262
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I D+ + LE +SGG ++
Sbjct: 610 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 669
Query: 218 NILLLYRGRNY 228
++++RG+NY
Sbjct: 670 YAIVVFRGKNY 680
>gi|162459980|ref|NP_001106061.1| CRM family member 3 [Zea mays]
gi|156789080|gb|ABU96081.1| CRM family member 3 [Zea mays]
Length = 842
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 145 AELVERYRHSDC--ARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCF 202
A + R RH+ + +G GVT +++ + WK E VR+K G P L+M F
Sbjct: 171 AAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMR--LF 228
Query: 203 H--LEEKSGGKIIYRNINILLLYRGRNYD 229
H LE K+GG +I+R+ + LYRG +YD
Sbjct: 229 HEILERKTGGLVIWRSGTSVSLYRGVDYD 257
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I D+ + LE +SGG ++
Sbjct: 605 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 664
Query: 218 NILLLYRGRNY 228
++++RG+NY
Sbjct: 665 YAIVVFRGKNY 675
>gi|357156286|ref|XP_003577404.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 881
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 145 AELVERYRHSD--CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCF 202
AEL R RH+ +I +G GVT ++ + WK E VR+K G P L+M F
Sbjct: 173 AEL-RRLRHATMRIKSRIQVGGAGVTREIVAKIKEKWKTDEVVRVKVSGTPALNMR--LF 229
Query: 203 H--LEEKSGGKIIYRNINILLLYRGRNYD 229
H LE K+GG +I+R+ + LYRG YD
Sbjct: 230 HEILERKTGGLVIWRSGTSVSLYRGVAYD 258
>gi|147852748|emb|CAN79523.1| hypothetical protein VITISV_010525 [Vitis vinifera]
Length = 902
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+ +G GVT ++D + WK +E V++KC G L+M + LE K+GG +I+R+
Sbjct: 238 KTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGT 297
Query: 219 ILLLYRGRNYD 229
+ LYRG +Y+
Sbjct: 298 SVSLYRGVSYE 308
>gi|115478793|ref|NP_001062990.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|48716728|dbj|BAD23409.1| putative CRS1 [Oryza sativa Japonica Group]
gi|50726191|dbj|BAD33710.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113631223|dbj|BAF24904.1| Os09g0363100 [Oryza sativa Japonica Group]
gi|125591023|gb|EAZ31373.1| hypothetical protein OsJ_15500 [Oryza sativa Japonica Group]
Length = 947
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 46/71 (64%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +G GVT +++ +H W+ E V+++ G P+L+M LEE++GG +I+R+
Sbjct: 359 RMRVGPGGVTQLIVESIHQKWRVEEVVKLRFEGPPSLNMKRTHDILEERTGGIVIWRSGR 418
Query: 219 ILLLYRGRNYD 229
++LYRG NY+
Sbjct: 419 SVVLYRGMNYN 429
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ V + ++H HWK E V++ G + ++ LE +SGG +I +
Sbjct: 772 LGRREVFDGTVQNMHLHWKHRELVKVLVKGKSFPQVKHIAISLEAESGGVLISVDKTTKG 831
Query: 220 --LLLYRGRNY 228
++LYRG+NY
Sbjct: 832 YAIILYRGKNY 842
>gi|225432918|ref|XP_002280226.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic [Vitis vinifera]
gi|297737163|emb|CBI26364.3| unnamed protein product [Vitis vinifera]
Length = 902
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+ +G GVT ++D + WK +E V++KC G L+M + LE K+GG +I+R+
Sbjct: 238 KTKIGGGGVTQAVVDMIREKWKTSEIVKLKCEGAAALNMRRIHEILERKTGGLVIWRSGT 297
Query: 219 ILLLYRGRNYD 229
+ LYRG +Y+
Sbjct: 298 SVSLYRGVSYE 308
>gi|414591664|tpg|DAA42235.1| TPA: CRM family member 3 [Zea mays]
Length = 1523
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 145 AELVERYRHSDC--ARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCF 202
A + R RH+ + +G GVT +++ + WK E VR+K G P L+M F
Sbjct: 852 AAELRRLRHAAIRIKSRTKVGGAGVTREIVEKIKEKWKTEEVVRVKVSGTPALNMR--LF 909
Query: 203 H--LEEKSGGKIIYRNINILLLYRGRNYD 229
H LE K+GG +I+R+ + LYRG +YD
Sbjct: 910 HEILERKTGGLVIWRSGTSVSLYRGVDYD 938
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I D+ + LE +SGG ++
Sbjct: 1286 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKG 1345
Query: 218 NILLLYRGRNY 228
++++RG+NY
Sbjct: 1346 YAIVVFRGKNY 1356
>gi|357158137|ref|XP_003578028.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 962
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +G GVT ++ +H+ W E V+++ G P+L+M LE+++GG +I+R+
Sbjct: 373 RMRIGPGGVTQAIVKSIHSKWSVDEVVKMRFEGPPSLNMKRTHEILEDRTGGTVIWRSGR 432
Query: 219 ILLLYRGRNYD 229
++LYRG NY+
Sbjct: 433 SIVLYRGMNYN 443
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ V + ++H HWK E V+I G + ++ LE +SGG +I +
Sbjct: 787 LGRREVFAGTVQNMHLHWKHRELVKIIVKGKSFAQVKHIAISLEAESGGVLISLDKTTKG 846
Query: 220 --LLLYRGRNY 228
+++YRG+NY
Sbjct: 847 YSIIVYRGKNY 857
>gi|356573408|ref|XP_003554853.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 1027
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 158 RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217
+++ +GK G+T +++ +H W+ E VRI C + +M LE K+GG +++R+
Sbjct: 147 QKLRVGKAGLTEGIVNGIHERWRSFEVVRIVCEDLSRFNMKRTHDLLERKTGGLVVWRSG 206
Query: 218 NILLLYRGRNY 228
+ ++LYRG +Y
Sbjct: 207 SKIILYRGTDY 217
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTL-DMDNVCFHLEEKSGGKII-YRNIN- 218
LG+ GV ++++H HWK E V+I C +L D+ + LE +SGG +I +N
Sbjct: 564 LGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDVQQIAQTLEAESGGILIAVERVNK 623
Query: 219 --ILLLYRGRNY 228
+++YRG+NY
Sbjct: 624 SYAIIVYRGKNY 635
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 257 DGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCS-HVGTNDC 315
+G+T EE +R GL P + L R GV+ V + +K E+V++ C+ + D
Sbjct: 541 EGITEEEKYMLRRIGLKMSPFLLLGRRGVFDGTVENMHLHWKYRELVKIICNKQMSLEDV 600
Query: 316 KKIGVKLR----DLVPCVPILFKDEQIILWRGK 344
++I L ++ V + K II++RGK
Sbjct: 601 QQIAQTLEAESGGILIAVERVNKSYAIIVYRGK 633
>gi|224118814|ref|XP_002317913.1| predicted protein [Populus trichocarpa]
gi|222858586|gb|EEE96133.1| predicted protein [Populus trichocarpa]
Length = 806
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 47/70 (67%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I++ K G+T+ +L+++H+ W++ E VR+K V DM +E ++GG +I+R +
Sbjct: 219 RISIPKAGITNAVLENIHDRWRKEELVRLKFHEVLAHDMKTAHEIVERRTGGLVIWRAGS 278
Query: 219 ILLLYRGRNY 228
+++++RG NY
Sbjct: 279 VMVVFRGTNY 288
>gi|297800788|ref|XP_002868278.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
gi|297314114|gb|EFH44537.1| hypothetical protein ARALYDRAFT_330061 [Arabidopsis lyrata subsp.
lyrata]
Length = 919
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 92 GFREPKRFSPFGPGRLDRKWTGTTALAPKEV---DRVRFEEERNRVLGDPLTEEEIAELV 148
GF E F FG + W +++ KE+ + +E R + L+E E+ L
Sbjct: 162 GFSEESPFGVFGGNEVKFPWEKVSSMEKKELVNGEWTAKKESRYSLAERTLSESELNRL- 220
Query: 149 ERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKS 208
R ++ + GVT ++D + WK +E VR+K G L+M + LE K+
Sbjct: 221 -RNVMFRTKSKMRVTGAGVTQAVVDAIQEKWKSSEIVRLKIEGASALNMRRMHEILERKT 279
Query: 209 GGKIIYRNINILLLYRGRNYDPKD 232
GG +I+R+ + LY + + +D
Sbjct: 280 GGLVIWRSGTSIALYNYKGGNNRD 303
>gi|15229636|ref|NP_188468.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|11994102|dbj|BAB01105.1| unnamed protein product [Arabidopsis thaliana]
gi|17380904|gb|AAL36264.1| unknown protein [Arabidopsis thaliana]
gi|332642570|gb|AEE76091.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 848
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+IN+ K G+T +++ +++ W++ E VR+K V DM +E ++GG +I+R +
Sbjct: 261 RINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGS 320
Query: 219 ILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLT 260
++++YRG +Y K PVI + P ++ V + D T
Sbjct: 321 VMVVYRGLDY--KGPPVISNQMAGPKETLFVPDVSSAGDEAT 360
>gi|297830494|ref|XP_002883129.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
gi|297328969|gb|EFH59388.1| EMB1865 [Arabidopsis lyrata subsp. lyrata]
Length = 846
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+IN+ K G+T +++ +++ W++ E VR+K V DM +E ++GG +I+R +
Sbjct: 261 RINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRTGGMVIWRAGS 320
Query: 219 ILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLT 260
++++YRG +Y K PVI + P ++ V + D T
Sbjct: 321 VMVVYRGLDY--KGPPVISNQMAGPKETLFVPDVSSAGDEAT 360
>gi|9294196|dbj|BAB02098.1| unnamed protein product [Arabidopsis thaliana]
Length = 850
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYR 215
A ++ + GVT +D + WK AE VR+K G L+M + LE+K+GG +I+R
Sbjct: 205 TASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWR 264
Query: 216 NINILLLYRGRNYD 229
+ + LYRG +Y+
Sbjct: 265 SGTSISLYRGVSYE 278
>gi|30686898|ref|NP_188947.2| CRM family member 3A [Arabidopsis thaliana]
gi|332643191|gb|AEE76712.1| CRM family member 3A [Arabidopsis thaliana]
Length = 881
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYR 215
A ++ + GVT +D + WK AE VR+K G L+M + LE+K+GG +I+R
Sbjct: 236 TASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWR 295
Query: 216 NINILLLYRGRNYD 229
+ + LYRG +Y+
Sbjct: 296 SGTSISLYRGVSYE 309
>gi|110742047|dbj|BAE98956.1| hypothetical protein [Arabidopsis thaliana]
Length = 717
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYR 215
A ++ + GVT +D + WK AE VR+K G L+M + LE+K+GG +I+R
Sbjct: 236 TASKMRIRGGGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWR 295
Query: 216 NINILLLYRGRNYD 229
+ + LYRG +Y+
Sbjct: 296 SGTSISLYRGVSYE 309
>gi|297831030|ref|XP_002883397.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
gi|297329237|gb|EFH59656.1| hypothetical protein ARALYDRAFT_898801 [Arabidopsis lyrata subsp.
lyrata]
Length = 873
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYR 215
A ++ + GVT +D + WK AE VR+K G L+M + LE+K+GG +I+R
Sbjct: 234 TASKMRIRGAGVTQVAVDAIKEKWKSAEIVRLKIEGASALNMRKMHEILEKKTGGLVIWR 293
Query: 216 NINILLLYRGRNYD 229
+ + LYRG +Y+
Sbjct: 294 SGTSISLYRGVSYE 307
>gi|359484307|ref|XP_002279505.2| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 884
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G GVT +++D +H W++ E V++K G + +M LE ++GG +I+R +
Sbjct: 285 RIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGS 344
Query: 219 ILLLYRGRNY 228
++LYRG Y
Sbjct: 345 SVVLYRGMAY 354
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN--- 218
LG G+ ++++H HWK E V+I G + ++ LE +SGG ++ +
Sbjct: 704 LGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKG 763
Query: 219 -ILLLYRGRNY 228
+++YRG+NY
Sbjct: 764 YAIIVYRGKNY 774
>gi|326492672|dbj|BAJ90192.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 879
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 148 VERYRHSD--CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFH-- 203
+ R RH+ + +G GVT ++ + W+ E VR+K G P L+M FH
Sbjct: 190 LRRLRHAAMRIKSKTQVGGAGVTREIVAKIKEKWRTDEVVRVKVNGTPALNMR--LFHEI 247
Query: 204 LEEKSGGKIIYRNINILLLYRGRNYDPKD 232
LE K+GG +I+R+ + LYRG YD D
Sbjct: 248 LERKTGGLVIWRSGTSVSLYRGVAYDVPD 276
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV ++++H HWK E V+I D+ LE +SGG ++
Sbjct: 622 LGRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRTALSLEVESGGVLVSVDKVSKG 681
Query: 218 NILLLYRGRNY 228
++++RG++Y
Sbjct: 682 YAIVVFRGKDY 692
>gi|297738658|emb|CBI27903.3| unnamed protein product [Vitis vinifera]
Length = 881
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G GVT +++D +H W++ E V++K G + +M LE ++GG +I+R +
Sbjct: 282 RIKVGAAGVTQSLVDAIHEKWRKDEVVKLKFEGPSSCNMKRTHEILETRTGGLVIWRTGS 341
Query: 219 ILLLYRGRNY 228
++LYRG Y
Sbjct: 342 SVVLYRGMAY 351
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN--- 218
LG G+ ++++H HWK E V+I G + ++ LE +SGG ++ +
Sbjct: 701 LGTRGIFDGTVENMHLHWKYRELVKIIVKGKNFAQVKHIAISLEAESGGVLVSVDRTPKG 760
Query: 219 -ILLLYRGRNY 228
+++YRG+NY
Sbjct: 761 YAIIVYRGKNY 771
>gi|168038664|ref|XP_001771820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676951|gb|EDQ63428.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1106
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 20/166 (12%)
Query: 81 YSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFE------------ 128
+ +N PA E F P+ PG LDR+W+ + P + RF
Sbjct: 249 FDKNPPATETSSFL-PRPGQAVHPG-LDRRWSNSNLEQPSDDLGSRFPWAMGENEEQEDH 306
Query: 129 ---EERNRVLGDPLTEEEIAE-LVERYRHSDCARQ--INLGKWGVTHNMLDDLHNHWKRA 182
E++ RV + E + E + R R Q + +G+ GVT +++ +H+ W+ +
Sbjct: 307 EQIEKKKRVRSPSVAELTLPEPELRRLRTLGLQLQGRLKIGRLGVTPGIVEAIHDRWRTS 366
Query: 183 EAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
E ++KC +++M LE +GG +I+R + ++YRG++Y
Sbjct: 367 ELAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRAGSAAVVYRGKDY 412
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 138 PLTEEEIAELVERYRHSDCARQ----INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVP 193
PL +E ++E ERY + + + LG+ GV ++++H HWK E V+I + P
Sbjct: 747 PLDKEFLSE-AERYMYRQQGLKHKGYLLLGRRGVFGGTVENMHLHWKHRELVKI-LVKAP 804
Query: 194 TLDMDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
+ LE +SGG ++ +++YRG+NY
Sbjct: 805 IAEAQQTAKMLERESGGILVDIVNTSKGQAIIVYRGKNY 843
>gi|147815878|emb|CAN72582.1| hypothetical protein VITISV_035294 [Vitis vinifera]
Length = 850
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+IN+ K G+T +L +H W++ E VR+K DM +E ++GG + +R+ +
Sbjct: 232 RINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGS 291
Query: 219 ILLLYRGRNYD--PKDRPV 235
+++++RG NY+ PK +PV
Sbjct: 292 VMVVFRGTNYEGPPKPQPV 310
>gi|297734212|emb|CBI15459.3| unnamed protein product [Vitis vinifera]
Length = 830
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+IN+ K G+T +L +H W++ E VR+K DM +E ++GG + +R+ +
Sbjct: 232 RINVPKAGITQAVLGKIHEKWRKEELVRLKFHEALAHDMKTAHEIVERRTGGLVTWRSGS 291
Query: 219 ILLLYRGRNYD--PKDRPV 235
+++++RG NY+ PK +PV
Sbjct: 292 VMVVFRGTNYEGPPKPQPV 310
>gi|255582755|ref|XP_002532154.1| conserved hypothetical protein [Ricinus communis]
gi|223528164|gb|EEF30228.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++N+ K G+T +++ +H+ W++ E VR+K V DM E ++GG +I+R +
Sbjct: 228 RVNVPKAGLTKEVVEKIHDKWRKNELVRLKFHEVLAHDMKTAHEITERRTGGLVIWRAGS 287
Query: 219 ILLLYRGRNYD 229
++++YRG +Y+
Sbjct: 288 VMVVYRGSSYE 298
>gi|125553229|gb|EAY98938.1| hypothetical protein OsI_20893 [Oryza sativa Indica Group]
Length = 801
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 121 EVDRVRFEEE----RNRVLGDPLTEEEIA-ELVERYRHSDCA--RQINLGKWGVTHNMLD 173
EV R R EE R RV L E I E + R R +I + K GVT + +
Sbjct: 161 EVARGRENEEDGVKRRRVRAPSLAELTIEDEELRRLRRLGMTLRDRITVPKAGVTQAVTE 220
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+H+ W+++E VR+K DM +E ++GG II+R+ +++++YRG NY
Sbjct: 221 KIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVVYRGSNY 275
>gi|47900539|gb|AAT39274.1| unknown protein [Oryza sativa Japonica Group]
gi|50878415|gb|AAT85189.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 798
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 121 EVDRVRFEEE----RNRVLGDPLTEEEIA-ELVERYRHSDCA--RQINLGKWGVTHNMLD 173
EV R R EE R RV L E I E + R R +I + K GVT + +
Sbjct: 158 EVARGRENEEDGVKRRRVRAPSLAELTIEDEELRRLRRLGMTLRDRITVPKAGVTQAVTE 217
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+H+ W+++E VR+K DM +E ++GG II+R+ +++++YRG NY
Sbjct: 218 KIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGSVMVVYRGSNY 272
>gi|222632479|gb|EEE64611.1| hypothetical protein OsJ_19463 [Oryza sativa Japonica Group]
Length = 601
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I + K GVT + + +H+ W+++E VR+K DM +E ++GG II+R+ +
Sbjct: 6 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLAHDMKTAHELVERRTGGLIIWRSGS 65
Query: 219 ILLLYRGRNY 228
++++YRG NY
Sbjct: 66 VMVVYRGSNY 75
>gi|326507446|dbj|BAK03116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 775
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I + K GVT + + +H+ W+++E VR+K DM +E ++GG II+R +
Sbjct: 195 RITVPKAGVTQAITEKIHDAWRKSELVRLKFHEDHANDMKTAHELVERRTGGLIIWRAGS 254
Query: 219 ILLLYRGRNY 228
++++YRG NY
Sbjct: 255 VMVVYRGSNY 264
>gi|168024308|ref|XP_001764678.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683972|gb|EDQ70377.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 625
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 43/70 (61%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +G+ GVT +++ +H W+ E ++KC +++M LE +GG +I+R+ +
Sbjct: 51 RLKIGRLGVTPGIVEAIHERWRTCEIAKVKCDAPLSMNMKKAHEDLERLTGGLVIWRSGS 110
Query: 219 ILLLYRGRNY 228
++YRG++Y
Sbjct: 111 AAVVYRGKDY 120
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 149 ERYRHSDCARQIN----LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHL 204
ERY + ++ LG+ GV ++++H HWK E V+I + + + + L
Sbjct: 446 ERYMYRKLGLKMKAFLLLGRRGVFSGTVENMHLHWKYRELVKI-LVKTSLPEAERIAKIL 504
Query: 205 EEKSGGKII----YRNINILLLYRGRNY 228
E +SGG ++ +++YRG+NY
Sbjct: 505 ENESGGILVDIITTSKGQAIVMYRGKNY 532
>gi|357128578|ref|XP_003565949.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 782
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I + K GVT + + +H+ W+++E VR+K DM +E ++GG II+R +
Sbjct: 198 RITVPKAGVTQAVTEKIHDAWRKSELVRLKFHEDLANDMKTAHELVERRTGGLIIWRAGS 257
Query: 219 ILLLYRGRNY 228
++++YRG NY
Sbjct: 258 VMVVYRGNNY 267
>gi|159469243|ref|XP_001692777.1| predicted protein [Chlamydomonas reinhardtii]
gi|158278030|gb|EDP03796.1| predicted protein [Chlamydomonas reinhardtii]
Length = 321
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDM---DNVCFHLEEKSGGKIIYRN 216
+ LG G+ ++L + + W+ +E V+++ + M VC LE+++GG +++R
Sbjct: 139 VRLGPSGLNASVLTSVASAWRNSELVKLRIVSRANKYMPYITQVCAALEQRTGGLVVWRA 198
Query: 217 INILLLYRGRNYD---PKDRPVIP 237
+ L+RG YD P RP +P
Sbjct: 199 GGSIWLFRGAGYDAASPSGRPGLP 222
>gi|125590660|gb|EAZ31010.1| hypothetical protein OsJ_15093 [Oryza sativa Japonica Group]
Length = 818
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 50 NPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDR 109
NP+ + P N++KL + +D+ D Y + + + + + F R
Sbjct: 295 NPKLNFDKSTPQ-NSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFAQNVEAR 353
Query: 110 KWTGTTALAPKE-----VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN--- 161
+ A+A KE ++ + E +R + EE ERY ++
Sbjct: 354 L---SQAIAEKEKTEKLIEELEMSSEPSRAETREVISEE-----ERYMLRKVGLKMKSFL 405
Query: 162 -LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRN 216
LG+ GV ++++H HWK E V+I C D++ LE +SGG ++
Sbjct: 406 LLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSK 465
Query: 217 INILLLYRGRNY 228
+ +++YRG+NY
Sbjct: 466 AHAIIIYRGKNY 477
>gi|168020023|ref|XP_001762543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686276|gb|EDQ72666.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 548
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ G+ + ++H HWK+ E VRI C P + + LE SGG +I +
Sbjct: 246 VGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEMGETLERLSGGIVIDIHQGTTI 305
Query: 221 LLYRGRNYD-PK-DRPVI 236
+++RGRNY PK D P+I
Sbjct: 306 IMWRGRNYKRPKVDIPII 323
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 259 LTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKI 318
LT E+ ++ G + + + R G+Y + + +K E VR+DC + K++
Sbjct: 225 LTPEQLYALKKLGYKNKNYVPVGRRGIYGGTIQNMHMHWKKHETVRIDCDNFPKEKIKEM 284
Query: 319 GVKLRDLVPCVPI-LFKDEQIILWRGK 344
G L L + I + + II+WRG+
Sbjct: 285 GETLERLSGGIVIDIHQGTTIIMWRGR 311
>gi|224091282|ref|XP_002309217.1| predicted protein [Populus trichocarpa]
gi|222855193|gb|EEE92740.1| predicted protein [Populus trichocarpa]
Length = 977
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G G+T +++D +H WK E V++K + +M LE ++GG II+R+ +
Sbjct: 382 RIKVGATGITQDLVDAIHEKWKLDEVVKLKFEWPLSCNMKRTHEILESRTGGLIIWRSGS 441
Query: 219 ILLLYRGRNY 228
+++YRG Y
Sbjct: 442 SVVMYRGTTY 451
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ GV ++++H HWK E V+I + ++ LE +SGG ++ +
Sbjct: 801 LGRRGVFDGTIENMHLHWKYRELVKIIVERKGIAQVKHIAISLEAESGGVLVSVDRTTKG 860
Query: 220 --LLLYRGRNY 228
+++YRG+NY
Sbjct: 861 YAIIVYRGKNY 871
>gi|356527819|ref|XP_003532504.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 719
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
L EEE+ L R +I + K G+T +LD +H HW E VR+K +M
Sbjct: 144 LVEEELRRL--RTLGMSLKEKITIPKAGLTRAVLDRIHRHWSNCELVRLKFHEFLAQNMK 201
Query: 199 NVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+E ++ G +I+R+ + + +YRG+NY
Sbjct: 202 LAHQIVEHRTRGLVIWRSGSYMWVYRGKNY 231
>gi|356522763|ref|XP_003530015.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 734
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 146 ELVERYRHSD--CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFH 203
EL+ R R ++++ K G+T +++ +H W++ E VR+K DM
Sbjct: 187 ELLRRLRREGMRVRERVSVPKAGLTQEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEI 246
Query: 204 LEEKSGGKIIYRNINILLLYRGRNYDPKD 232
+E ++GG + +R+ +++++YRG +Y D
Sbjct: 247 VERRTGGLVTWRSGSVMMVYRGIDYQGPD 275
>gi|334187011|ref|NP_194704.2| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
gi|332660271|gb|AEE85671.1| CRS1 / YhbY (CRM) domain-containing protein [Arabidopsis thaliana]
Length = 841
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
++ +G G+T +++ +H W+ E V++K +L+M LE+K+GG +I+R+ +
Sbjct: 262 RVKVGSAGITQALVEAIHEKWEVDEVVKLKFSEPYSLNMKRTHEVLEKKTGGLVIWRSGS 321
Query: 219 ILLLYRGRNYDPK 231
++LYRG +Y K
Sbjct: 322 SVVLYRGISYKLK 334
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ V ++++H HWK E V++ G + ++ LE +SGG ++ + +
Sbjct: 668 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 727
Query: 220 --LLLYRGRNY 228
++LYRG+NY
Sbjct: 728 YAIILYRGKNY 738
>gi|356564786|ref|XP_003550629.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 794
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 98 RFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCA 157
+ + G R +RK + ++ E +RV E ++ R L E I E R
Sbjct: 157 QHNSIGSVREERKGMASE-VSSNEAERVNGERKKRRS-NTELAERTIPEHELRRLRKIAL 214
Query: 158 RQI---NLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVP-TLDMDNVCFHLEEKSGGKII 213
R + ++G G+T ++ +H W+ AE V+ K G+P + M LE K GG +I
Sbjct: 215 RMMERFDVGVKGITQELVASVHQKWRDAEVVKFK-FGIPLSAHMKKAHQILESKIGGIVI 273
Query: 214 YRNINILLLYRGRNY 228
+R+ + ++LYRG Y
Sbjct: 274 WRSGSSIVLYRGMAY 288
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIY-----RN 216
LG+ V ++++H HWK E V++ G + + ++ LE +SGG ++ R
Sbjct: 638 LGRRDVYAGTIENMHLHWKYRELVKLIVKGRNSAQVKHISISLEAESGGVLVSVDKDTRG 697
Query: 217 INILLLYRGRNY 228
+ +++YRG+NY
Sbjct: 698 HHTIIVYRGKNY 709
>gi|218194999|gb|EEC77426.1| hypothetical protein OsI_16218 [Oryza sativa Indica Group]
Length = 818
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 22/192 (11%)
Query: 50 NPRTQQNPPVPSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDR 109
NP+ + P N++KL + +D+ D Y + + + + + F R
Sbjct: 295 NPKLNFDKSTPQ-NSSKLKMATDVSLDGHECYEKKHKDETAVSDNRAESLNVFTQNVEAR 353
Query: 110 KWTGTTALAPKE-----VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQIN--- 161
+ A+A KE ++ + E +R + EE ERY ++
Sbjct: 354 L---SQAIAEKEKTEKLIEELEMSSEPSRAETREVISEE-----ERYMLRKVGLKMKSFL 405
Query: 162 -LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRN 216
LG+ GV ++++H HWK E V+I C D++ LE +SGG ++
Sbjct: 406 LLGRRGVFDGTVENMHLHWKYRELVKIICKEHNIKDVEYAARTLEAESGGILVAVERVSK 465
Query: 217 INILLLYRGRNY 228
+ +++YRG+NY
Sbjct: 466 AHAIIIYRGKNY 477
>gi|356529577|ref|XP_003533366.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 791
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 146 ELVERYRHSD--CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFH 203
EL+ R R ++++ K G+T +++ +H W++ E VR+K DM
Sbjct: 188 ELLRRLRREGMRVRERVSVPKAGLTEEVMEKIHKRWRKEELVRLKFHEELAKDMRKAHEI 247
Query: 204 LEEKSGGKIIYRNINILLLYRGRNYDPKD 232
+E ++GG + +R+ +++++YRG +Y D
Sbjct: 248 VERRTGGLVTWRSGSVMMVYRGIDYQGPD 276
>gi|357500379|ref|XP_003620478.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355495493|gb|AES76696.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 820
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 146 ELVERYRHSDCA--RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFH 203
EL+ R R ++++ K G+T +++ +H W++ E VR+K +M
Sbjct: 216 ELLRRLRREGMHLRERVSVPKAGLTQEVMEKIHESWRKKELVRLKFHEELAKNMRIAHQI 275
Query: 204 LEEKSGGKIIYRNINILLLYRGRNY 228
+E ++GG + +R +++++YRG+NY
Sbjct: 276 VERRTGGLVTWRAGSVMIVYRGKNY 300
>gi|334186525|ref|NP_193187.3| CRM family member 3B [Arabidopsis thaliana]
gi|332658053|gb|AEE83453.1| CRM family member 3B [Arabidopsis thaliana]
Length = 907
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 166 GVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRG 225
GVT ++D + WK +E VR+K G L+M + LE K+GG +I+R+ + LY
Sbjct: 247 GVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIALYNY 306
Query: 226 RNYDPKD 232
+ +D
Sbjct: 307 KGGSNRD 313
>gi|38637075|dbj|BAD03332.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40253825|dbj|BAD05761.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222640038|gb|EEE68170.1| hypothetical protein OsJ_26290 [Oryza sativa Japonica Group]
Length = 126
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 36 DDDPPFSPKRQKPQNPRTQQNPPVPSSNTN---KLP--LKSDLPFDFKYSYSENNPAVEP 90
DDDPPF+ + P P ++ N K P ++SDLPF+F+YSYS+ +PA P
Sbjct: 37 DDDPPFTRVTECPPRPASKPAHATKKKNQGGSIKQPELVRSDLPFNFRYSYSKTDPAWRP 96
Query: 91 IGFR 94
IGF+
Sbjct: 97 IGFQ 100
>gi|2244807|emb|CAB10230.1| hypothetical protein [Arabidopsis thaliana]
gi|7268157|emb|CAB78493.1| hypothetical protein [Arabidopsis thaliana]
Length = 918
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 166 GVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRG 225
GVT ++D + WK +E VR+K G L+M + LE K+GG +I+R+ + LY
Sbjct: 233 GVTQAVVDAIQEKWKGSEIVRLKIEGSSALNMRRMHEILERKTGGLVIWRSGTSIALYNY 292
Query: 226 RNYDPKD 232
+ +D
Sbjct: 293 KGGSNRD 299
>gi|356567264|ref|XP_003551841.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Glycine max]
Length = 712
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 15/96 (15%)
Query: 155 DCARQINL--------GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I L G+ G+ +L+ LH HWK E V++ + + N LE
Sbjct: 563 ECFRKIGLKMQSSLLLGRRGIFDGVLEGLHQHWKHREVVKVITMQKLFSQVINTAKVLET 622
Query: 207 KSGGKII----YRNINILLLYRGRNYDPKDRPVIPL 238
+SGG ++ + + +++YRG+NY RP I L
Sbjct: 623 ESGGILVSVDKLKEGHAIIIYRGKNY---KRPSIKL 655
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query: 147 LVERYRHSDCARQ---INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTL-DMDNVCF 202
L+ R R ++ AR I + K GVT +++D + W+R E IK +P +MD
Sbjct: 175 LLRRLR-NEAARMRTWIKVKKAGVTQDVVDQIKRTWRRNELAMIK-FDIPLCRNMDRARE 232
Query: 203 HLEEKSGGKIIYRNINILLLYRGRNYDPKD 232
+E K+GG ++ + L++YRG N+ +
Sbjct: 233 IVETKTGGLVVLSKKDFLVVYRGCNHHSSE 262
>gi|255546121|ref|XP_002514120.1| conserved hypothetical protein [Ricinus communis]
gi|223546576|gb|EEF48074.1| conserved hypothetical protein [Ricinus communis]
Length = 930
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 42/70 (60%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+I +G G+ +++D +H W+ E V++K + +M LE ++GG +I+R+ +
Sbjct: 344 RIKVGAAGINQDLVDAVHEKWRLDEVVKLKFEEPLSFNMRRTHEILENRTGGLVIWRSGS 403
Query: 219 ILLLYRGRNY 228
++LYRG +Y
Sbjct: 404 SVVLYRGISY 413
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKI--IYRNIN- 218
LGK GV ++++H HWK E V++ G + ++ LE +SGG + I R
Sbjct: 763 LGKRGVYDGTIENMHLHWKYRELVKVIVRGKSFAQVKHIAISLEAESGGVLVSIERTTKG 822
Query: 219 -ILLLYRGRNY 228
+++YRG+NY
Sbjct: 823 YAIIVYRGKNY 833
>gi|357516865|ref|XP_003628721.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
gi|355522743|gb|AET03197.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Medicago
truncatula]
Length = 387
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218
+ +G G+TH ++D +H W E V+ K + +M LE K+GG +++R +
Sbjct: 8 RFGVGVAGITHELVDAIHEKWMVDEVVKFKFDSPLSANMKRANQILESKTGGIVVWRLGS 67
Query: 219 ILLLYRGRNY 228
++LYRG +Y
Sbjct: 68 SIVLYRGMSY 77
>gi|115476078|ref|NP_001061635.1| Os08g0360100 [Oryza sativa Japonica Group]
gi|75132343|sp|Q6YYA3.1|CRS1_ORYSJ RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|38637564|dbj|BAD03815.1| putative CRS1 [Oryza sativa Japonica Group]
gi|113623604|dbj|BAF23549.1| Os08g0360100 [Oryza sativa Japonica Group]
Length = 725
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----Y 214
+ LG+ GV +++++H HWK E V++ + LE ++GG +I +
Sbjct: 584 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 643
Query: 215 RNINILLLYRGRNY 228
+ ++LYRG+NY
Sbjct: 644 TTSHAIILYRGKNY 657
>gi|222640429|gb|EEE68561.1| hypothetical protein OsJ_27045 [Oryza sativa Japonica Group]
Length = 725
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----Y 214
+ LG+ GV +++++H HWK E V++ + LE ++GG +I +
Sbjct: 584 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 643
Query: 215 RNINILLLYRGRNY 228
+ ++LYRG+NY
Sbjct: 644 TTSHAIILYRGKNY 657
>gi|125560392|gb|EAZ05840.1| hypothetical protein OsI_28077 [Oryza sativa Indica Group]
Length = 125
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 36 DDDPPFSPKRQKPQNPRTQQNPPVPSSNTN---KLP--LKSDLPFDFKYSYSENNPAVEP 90
DDDPPF+ + P P ++ N K P ++SDLPF+F+YSYS+ +PA P
Sbjct: 37 DDDPPFTRLTECPPRPASKPAHATKKKNQGGSIKQPELVRSDLPFNFRYSYSKTDPAWRP 96
Query: 91 IGFR 94
IGF+
Sbjct: 97 IGFQ 100
>gi|326492786|dbj|BAJ90249.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
LTEEE ++ R + LG+ G+ +++++H HWK E V++ +
Sbjct: 579 LTEEE--RMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQIT 636
Query: 199 NVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
LE ++GG +I N + ++LYRG+NY
Sbjct: 637 YTSMLLEVETGGMLIATQKLTNSHAIILYRGKNY 670
>gi|326499694|dbj|BAJ86158.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
LTEEE ++ R + LG+ G+ +++++H HWK E V++ +
Sbjct: 579 LTEEE--RMIFRKIGLKMDEHVLLGRRGIFDGVIEEIHQHWKHKEIVKVITKQNQAYQIT 636
Query: 199 NVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
LE ++GG +I N + ++LYRG+NY
Sbjct: 637 YTSMLLEVETGGMLIATQKLTNSHAIILYRGKNY 670
>gi|224055583|ref|XP_002298551.1| predicted protein [Populus trichocarpa]
gi|222845809|gb|EEE83356.1| predicted protein [Populus trichocarpa]
Length = 496
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + + SGG ++ N+ ++++RGRNY PK
Sbjct: 114 NMHMHWKFHETVQVSCDNFPKEKIKEMATMIARLSGGIVVNVHNVKTIIMFRGRNYRQPK 173
Query: 232 DRPVIPL 238
D +IPL
Sbjct: 174 D--LIPL 178
>gi|218201029|gb|EEC83456.1| hypothetical protein OsI_28955 [Oryza sativa Indica Group]
Length = 514
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV +++++H HWK E V++ + LE ++GG +I +
Sbjct: 376 LGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQANQITYTSMMLEVETGGTLIAIERFTTS 435
Query: 218 NILLLYRGRNY 228
+ ++LYRG+NY
Sbjct: 436 HAIILYRGKNY 446
>gi|357145812|ref|XP_003573775.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Brachypodium distachyon]
Length = 730
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
LTEEE ++ R + LG+ GV +++++H HWK E V++ + +
Sbjct: 580 LTEEE--RMIFRKIGLKMDEHVLLGRRGVFDGVIEEIHQHWKHKEIVKVITKQNQSYQIT 637
Query: 199 NVCFHLEEKSGGKIIYR----NINILLLYRGRNY 228
LE ++GG +I + + ++LYRG+NY
Sbjct: 638 YTSMLLEVETGGVLIATQKLPHSHAIILYRGKNY 671
>gi|302759655|ref|XP_002963250.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
gi|300168518|gb|EFJ35121.1| hypothetical protein SELMODRAFT_404989 [Selaginella moellendorffii]
Length = 274
Score = 44.7 bits (104), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIY--RNI 217
+ +GK GV + D+++HW E +RI C G P + + + SG +I
Sbjct: 119 LTIGKRGVWEGFIRDIYSHWINHETLRIYCEGYPLRKLRPMAEKVARMSGAVVIAVTEET 178
Query: 218 NILLLYRGRNYDPKDRP 234
+LYRGRN+ +P
Sbjct: 179 MSFILYRGRNFSHGYQP 195
>gi|255551422|ref|XP_002516757.1| conserved hypothetical protein [Ricinus communis]
gi|223544130|gb|EEF45655.1| conserved hypothetical protein [Ricinus communis]
Length = 742
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 155 DCARQINL--------GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I L G+ GV +++ LH HWK E V++ L + LE
Sbjct: 600 ECLRKIGLKMRSSLLLGRRGVFDGVIEGLHQHWKHREVVKVISLQRMFAQVIRTAKFLEA 659
Query: 207 KSGGKII----YRNINILLLYRGRNY 228
++GG ++ + + +++YRG+NY
Sbjct: 660 ETGGILVSIDKLKEGHAIIIYRGKNY 685
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 150 RYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSG 209
R S + + + K GVT +++D + W+ E +K +MD +E K+G
Sbjct: 207 RTEASKMRKWVKVMKAGVTQSVVDQIRYAWRNNELAMVKFDLPLCRNMDRAREIVELKTG 266
Query: 210 GKIIYRNINILLLYRGRNY 228
G +++ + L++YRG NY
Sbjct: 267 GLVVWTRKDSLVIYRGCNY 285
>gi|297803062|ref|XP_002869415.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
gi|297315251|gb|EFH45674.1| hypothetical protein ARALYDRAFT_328739 [Arabidopsis lyrata subsp.
lyrata]
Length = 775
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ V ++++H HWK E V++ G + ++ LE +SGG ++ + +
Sbjct: 625 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 684
Query: 220 --LLLYRGRNY 228
++LYRG+NY
Sbjct: 685 YSIILYRGKNY 695
>gi|449490080|ref|XP_004158502.1| PREDICTED: LOW QUALITY PROTEIN: chloroplastic group IIA intron
splicing facilitator CRS1, chloroplastic-like [Cucumis
sativus]
Length = 760
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 147 LVERYR--HSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVP-TLDMDNVCFH 203
L+ER + S + + + K GVT ++++ + W+R E +K VP + +MD
Sbjct: 193 LLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLK-FDVPLSRNMDRAREI 251
Query: 204 LEEKSGGKIIYRNINILLLYRGRNY 228
+E K+GG +++ N L++YRG NY
Sbjct: 252 VEMKTGGMVVWSKKNALVIYRGCNY 276
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YR 215
+ LG+ GV +++ LH HWK E V++ + ++ LE +SGG ++ +
Sbjct: 632 LTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLK 691
Query: 216 NINILLLYRGRNY 228
++++RG+NY
Sbjct: 692 EGYAIIIFRGKNY 704
>gi|238007578|gb|ACR34824.1| unknown [Zea mays]
gi|414586597|tpg|DAA37168.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 342
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++
Sbjct: 58 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDI 117
Query: 215 RNINILLLYRGRNY 228
++ N +++YRG+NY
Sbjct: 118 QDGNTIIMYRGKNY 131
>gi|5123569|emb|CAB45335.1| putative protein [Arabidopsis thaliana]
gi|7269874|emb|CAB79733.1| putative protein [Arabidopsis thaliana]
Length = 776
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI-- 219
LG+ V ++++H HWK E V++ G + ++ LE +SGG ++ + +
Sbjct: 626 LGRREVYDGTIENMHLHWKHRELVKVIVRGKSLPQVKHIAISLEAESGGVLVSVDKTMKG 685
Query: 220 --LLLYRGRNY 228
++LYRG+NY
Sbjct: 686 YAIILYRGKNY 696
>gi|449441730|ref|XP_004138635.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Cucumis sativus]
Length = 760
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 147 LVERYR--HSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVP-TLDMDNVCFH 203
L+ER + S + + + K GVT ++++ + W+R E +K VP + +MD
Sbjct: 193 LLERLKGEASKMEKWVKVNKVGVTQDVVNQIQFMWERNELAMLK-FDVPLSRNMDRAREI 251
Query: 204 LEEKSGGKIIYRNINILLLYRGRNY 228
+E K+GG +++ N L++YRG NY
Sbjct: 252 VEMKTGGMVVWSKKNALVVYRGCNY 276
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YR 215
+ LG+ GV +++ LH HWK E V++ + ++ LE +SGG ++ +
Sbjct: 632 LTLGRRGVFDGVIEGLHQHWKHREVVKVITMQRAFNQVNYTAKLLEAESGGILVSVDKLK 691
Query: 216 NINILLLYRGRNY 228
++++RG+NY
Sbjct: 692 EGYAIIIFRGKNY 704
>gi|212723506|ref|NP_001132081.1| uncharacterized protein LOC100193495 [Zea mays]
gi|194693368|gb|ACF80768.1| unknown [Zea mays]
gi|414586598|tpg|DAA37169.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
gi|414586599|tpg|DAA37170.1| TPA: hypothetical protein ZEAMMB73_229116 [Zea mays]
Length = 485
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++
Sbjct: 201 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIAIELATLSGGIVLDI 260
Query: 215 RNINILLLYRGRNY 228
++ N +++YRG+NY
Sbjct: 261 QDGNTIIMYRGKNY 274
>gi|225452088|ref|XP_002280704.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic-like [Vitis vinifera]
Length = 1184
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 147 LVERYRHSDCA--RQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHL 204
L+ER R + + + K GVT +++D +H WK E +K +MD L
Sbjct: 206 LLERLRGEAVKMRKWVKVKKAGVTESVVDQIHMVWKSDELAMVKFDMPLCRNMDRAREIL 265
Query: 205 EEKSGGKIIYRNINILLLYRGRNYDPKDR 233
E K+ G +I+ + L++YRG NY +
Sbjct: 266 EIKTRGLVIWSKKDTLVVYRGSNYQSTSK 294
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 155 DCARQIN--------LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I LG+ GV +++ LH HWK E V++ + + LE
Sbjct: 641 ECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLES 700
Query: 207 KSGGKII----YRNINILLLYRGRNY 228
+SGG ++ + + +++YRG+NY
Sbjct: 701 ESGGVLVSIDKLKEGHAIIIYRGKNY 726
>gi|168021235|ref|XP_001763147.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685630|gb|EDQ72024.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 274
Score = 43.5 bits (101), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 20/138 (14%)
Query: 125 VRFEEERNRVLGD--------PLTEEEIAELVERYRHS----DCARQINLGKWGVTHNML 172
VR E+ERN G L +E EL Y H C Q+ GKWG+T N +
Sbjct: 122 VRNEQERNVASGGEKVRRTFRQLGNKEKKEL-RAYAHQLGNDICIHQV--GKWGLTANCI 178
Query: 173 DDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKD 232
+ + + E ++I+ L ++ + LE K+G +I+ + LLLYR P
Sbjct: 179 TAISDALEANELIKIRVLDNLDEELADTASKLESKTGAQIVGKMGRTLLLYR-----PSM 233
Query: 233 RPVIPLMLWRPYAPIYPK 250
R + L + A Y K
Sbjct: 234 RKLKAAQLAQEKAFKYQK 251
>gi|162463484|ref|NP_001105008.1| chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic precursor [Zea mays]
gi|75173308|sp|Q9FYT6.1|CRS1_MAIZE RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|9837550|gb|AAG00595.1|AF290414_1 CRS1 [Zea mays]
Length = 715
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 137 DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLD 196
+ LTEEE R D + LG+ G+ +++++H HWK E V++ T
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGL--VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 197 MDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
+ LE ++GG +I + ++LYRG+NY
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
>gi|414870652|tpg|DAA49209.1| TPA: chloroplast RNA splicing1 [Zea mays]
Length = 715
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 137 DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLD 196
+ LTEEE R D + LG+ G+ +++++H HWK E V++ T
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGL--VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 197 MDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
+ LE ++GG +I + ++LYRG+NY
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
>gi|255572670|ref|XP_002527268.1| conserved hypothetical protein [Ricinus communis]
gi|223533361|gb|EEF35112.1| conserved hypothetical protein [Ricinus communis]
Length = 458
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + V++ ++ + L +GG ++
Sbjct: 186 CKNYVPVGRRGIYQGVILNMHLHWKKHQTVQVVVKTFSPEEVKEIAAELARLTGGIVLDI 245
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 246 HEENTIIMYRGKNY 259
>gi|357521229|ref|XP_003630903.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355524925|gb|AET05379.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 318
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 139 LTEEE---IAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTL 195
LTEEE + E+ +H + +G+ GV ++ ++H HWK+ E V++ C
Sbjct: 187 LTEEERHYLKRTGEKKKH-----YVPVGRRGVFGEVVLNMHLHWKKHETVKVICKPCKPG 241
Query: 196 DMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
L S G +I + NI++ YRGRNY
Sbjct: 242 QAHEYTEELTRPSKGIVIDIKPNNIIIFYRGRNY 275
>gi|296087258|emb|CBI33632.3| unnamed protein product [Vitis vinifera]
Length = 529
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 155 DCARQIN--------LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I LG+ GV +++ LH HWK E V++ + + LE
Sbjct: 342 ECFRKIGQKMDSSLLLGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLES 401
Query: 207 KSGGKII----YRNINILLLYRGRNY 228
+SGG ++ + + +++YRG+NY
Sbjct: 402 ESGGVLVSIDKLKEGHAIIIYRGKNY 427
>gi|242073570|ref|XP_002446721.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
gi|241937904|gb|EES11049.1| hypothetical protein SORBIDRAFT_06g021160 [Sorghum bicolor]
Length = 484
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++
Sbjct: 200 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPEEVKEIATELARLSGGIVLDI 259
Query: 215 RNINILLLYRGRNY 228
++ N +++YRG+NY
Sbjct: 260 QDGNTIIMYRGKNY 273
>gi|51038196|gb|AAT93999.1| unknow protein [Oryza sativa Japonica Group]
gi|222630175|gb|EEE62307.1| hypothetical protein OsJ_17096 [Oryza sativa Japonica Group]
Length = 560
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I N ++++RGRNY PK
Sbjct: 177 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 236
Query: 232 DRPVIPL 238
+ +IPL
Sbjct: 237 N--LIPL 241
>gi|125550822|gb|EAY96531.1| hypothetical protein OsI_18436 [Oryza sativa Indica Group]
Length = 560
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I N ++++RGRNY PK
Sbjct: 177 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 236
Query: 232 DRPVIPL 238
+ +IPL
Sbjct: 237 N--LIPL 241
>gi|297818350|ref|XP_002877058.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
gi|297322896|gb|EFH53317.1| hypothetical protein ARALYDRAFT_484545 [Arabidopsis lyrata subsp.
lyrata]
Length = 488
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
++H HWK E V++ C P + + + SGG +I N+ ++++RGRNY
Sbjct: 125 NMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNY 180
>gi|356573355|ref|XP_003554827.1| PREDICTED: uncharacterized protein LOC100782246 [Glycine max]
Length = 653
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I N+ ++++RGRNY PK
Sbjct: 184 NMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQPK 243
Query: 232 DRPVIPL 238
+ +IP+
Sbjct: 244 N--LIPI 248
>gi|356513969|ref|XP_003525680.1| PREDICTED: uncharacterized protein LOC100780131 [Glycine max]
Length = 653
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I N+ ++++RGRNY PK
Sbjct: 184 NMHLHWKFHETVQVCCDNFPKEKIKEMASMLARLSGGIVINVHNVKTIIMFRGRNYRQPK 243
Query: 232 DRPVIPL 238
+ +IP+
Sbjct: 244 N--LIPI 248
>gi|15232195|ref|NP_189392.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
gi|11994182|dbj|BAB01285.1| unnamed protein product [Arabidopsis thaliana]
gi|332643815|gb|AEE77336.1| RNA-binding CRS1 / YhbY (CRM) domain protein [Arabidopsis thaliana]
Length = 491
Score = 42.4 bits (98), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + + SGG +I N+ ++++RGRNY PK
Sbjct: 125 NMHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPK 184
Query: 232 DRPVIPL 238
+ +IP+
Sbjct: 185 N--LIPV 189
>gi|255560940|ref|XP_002521483.1| conserved hypothetical protein [Ricinus communis]
gi|223539382|gb|EEF40973.1| conserved hypothetical protein [Ricinus communis]
Length = 745
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I N+ ++++RGRNY PK
Sbjct: 185 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINIHNVKTIIMFRGRNYRQPK 244
Query: 232 DRPVIPL 238
+ +IP+
Sbjct: 245 N--LIPI 249
>gi|225448146|ref|XP_002263852.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Vitis vinifera]
Length = 401
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 128 CKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDI 187
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 188 HEENTIIMYRGKNY 201
>gi|297739537|emb|CBI29719.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 58 CKNYVPIGRRGIYQGVILNMHLHWKKHQTLQVVVKTFSPEEVKEIAVELARLTGGIVLDI 117
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 118 HEENTIIMYRGKNY 131
>gi|388504790|gb|AFK40461.1| unknown [Medicago truncatula]
Length = 190
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 67/122 (54%), Gaps = 5/122 (4%)
Query: 107 LDRKW--TGTTALAPKEVDRVRFEEER-NRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
L R+W + + + +EV+ ++++ N V L +EE++ L R ++I++
Sbjct: 71 LHRQWIRSDESVIPSEEVEHKLLKKKKKNEVTVPCLEKEELSRL--RTMGIHLKQKISIP 128
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
K G+T ++L +H+ W E V++K +M+ ++ ++GG +I+R+ +++ +Y
Sbjct: 129 KSGLTRSVLQRIHHQWNTNELVKLKFHQQLVQNMNLAHNIVQRRTGGLVIWRSGSVMWVY 188
Query: 224 RG 225
RG
Sbjct: 189 RG 190
>gi|114777425|ref|ZP_01452422.1| hypothetical protein SPV1_14034 [Mariprofundus ferrooxydans PV-1]
gi|114552207|gb|EAU54709.1| hypothetical protein SPV1_14034 [Mariprofundus ferrooxydans PV-1]
Length = 92
Score = 42.0 bits (97), Expect = 0.50, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 39/65 (60%)
Query: 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKK 317
L+ +E KE++ R H P++++ + G+ N+V + +A T E++++ + ++CK
Sbjct: 2 ALSSKERKELKARAHHLKPVIRIGQKGITENLVLETEQALDTHELIKVHIAGENGSECKA 61
Query: 318 IGVKL 322
G++L
Sbjct: 62 SGLEL 66
>gi|186523322|ref|NP_197122.2| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
gi|374095377|sp|Q9LF10.2|CRS1_ARATH RecName: Full=Chloroplastic group IIA intron splicing facilitator
CRS1, chloroplastic; AltName: Full=Chloroplastic RNA
splicing factor 1; AltName: Full=Protein CHLOROPLAST RNA
SPLICING 1; Flags: Precursor
gi|332004875|gb|AED92258.1| ortholog of maize chloroplast splicing factor CRS1 [Arabidopsis
thaliana]
Length = 720
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 155 DCARQINL--------GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I L G+ GV +++ LH HWK E ++ + + LE
Sbjct: 578 ECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALET 637
Query: 207 KSGGKII----YRNINILLLYRGRNYDPKDRPVIPLM 239
+S G +I + + +L+YRG+NY RP LM
Sbjct: 638 ESNGVLISIEKLKEGHAILIYRGKNY---KRPSSKLM 671
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 43/269 (15%)
Query: 119 PKEVDRVRFEEERNRVLGDPLTEEEIAE--LVERYRH--SDCARQINLGKWGVTHNMLDD 174
P E + RF R + P T E I + L+ R R S + +N+ K GVT +++
Sbjct: 181 PWEREEERFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNK 240
Query: 175 LHNHWKRAEAVRIKCLGVPTL-DMDNVCFHLEEKSGGKIIYRNINILLLYRGR-NYDPKD 232
+ + WK E ++ VP +M+ +E K+GG ++ L++YRG +Y +
Sbjct: 241 IKSMWKLNELAMVR-FDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSSEG 299
Query: 233 RPVIPLMLW---------------------RPY---APIYPKVVK-----------NVAD 257
+ I L+ RP+ A + P+VV N
Sbjct: 300 QDEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRA 359
Query: 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTN-DCK 316
LT EE +RN P L RN + + + + ++ + ++ N + +
Sbjct: 360 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 419
Query: 317 KIGVKLRDLVPCVPILFKDEQIILWRGKE 345
++ +LR L V IL I+L+RGK+
Sbjct: 420 EMADELRYLTGGVLILRNKYLIVLYRGKD 448
>gi|224127512|ref|XP_002329296.1| predicted protein [Populus trichocarpa]
gi|222870750|gb|EEF07881.1| predicted protein [Populus trichocarpa]
Length = 687
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 155 DCARQINL--------GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I L G+ GV +++ LH HWK E V++ + + + LE
Sbjct: 534 ECFRKIGLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLLEA 593
Query: 207 KSGGKII----YRNINILLLYRGRNY 228
+S G ++ + + +++YRG+NY
Sbjct: 594 ESDGILVSVDKLKEGHAIIIYRGKNY 619
>gi|9755828|emb|CAC01859.1| putative protein [Arabidopsis thaliana]
Length = 718
Score = 41.6 bits (96), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 155 DCARQINL--------GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I L G+ GV +++ LH HWK E ++ + + LE
Sbjct: 576 ECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALET 635
Query: 207 KSGGKII----YRNINILLLYRGRNYDPKDRPVIPLM 239
+S G +I + + +L+YRG+NY RP LM
Sbjct: 636 ESNGVLISIEKLKEGHAILIYRGKNY---KRPSSKLM 669
>gi|296087592|emb|CBI34848.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I ++ ++++RGRNY PK
Sbjct: 182 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPK 241
Query: 232 DRPVIPLMLWRPYAPIYPKVVKNVA 256
+ +IP+ K K A
Sbjct: 242 N--LIPINTLTKRKATATKKAKEAA 264
>gi|413917671|gb|AFW57603.1| hypothetical protein ZEAMMB73_144408 [Zea mays]
Length = 520
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I N ++++RGRNY PK
Sbjct: 169 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNYRQPK 228
Query: 232 DRPVIPL 238
+ +IP
Sbjct: 229 N--LIPF 233
>gi|356498434|ref|XP_003518057.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like, partial [Glycine max]
Length = 383
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++ N +
Sbjct: 119 VGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIAAELARLSGGIVLDIHEDNTI 178
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 179 IMYRGKNY 186
>gi|297831446|ref|XP_002883605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329445|gb|EFH59864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1055
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ +++ + L +GG ++
Sbjct: 806 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVNEIAVELARLTGGIVLDV 865
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 866 HEGNTIIMYRGKNY 879
>gi|167998334|ref|XP_001751873.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696971|gb|EDQ83308.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 590
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 150 RYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSG 209
R R +++ G+ GV +++++H HWK E V++ G P + + LE +SG
Sbjct: 161 RMRARLLMGKLSSGRRGVFDGVVENMHLHWKHRELVKVIFKG-PIFEAEQTAKILEMESG 219
Query: 210 GKII----YRNINILLLYRGRNY 228
G ++ ++ YRG+NY
Sbjct: 220 GVLVGIVTTTKGQAIIFYRGKNY 242
>gi|356501797|ref|XP_003519710.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 382
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++ N +
Sbjct: 139 VGRRGIYQGVILNMHLHWKKHQTLKVVVKTFSAEEVKEIATELARLSGGIVLDIHEDNTI 198
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 199 IMYRGKNY 206
>gi|224132018|ref|XP_002321235.1| predicted protein [Populus trichocarpa]
gi|222862008|gb|EEE99550.1| predicted protein [Populus trichocarpa]
Length = 413
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 145 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLKVVVKTFTPEEVKEIAAELARFTGGIVLDI 204
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 205 HEENTIIMYRGKNY 218
>gi|224128874|ref|XP_002328988.1| predicted protein [Populus trichocarpa]
gi|222839222|gb|EEE77573.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ GV ++ ++H HWK+ E V++ C +D L S G I R N +
Sbjct: 200 VGRRGVFGGVVLNMHLHWKKHETVKVTCKPCKPGQIDEYAEELARLSKGIAIDIRPDNTI 259
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 260 IFYRGKNY 267
>gi|242078893|ref|XP_002444215.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
gi|241940565|gb|EES13710.1| hypothetical protein SORBIDRAFT_07g015120 [Sorghum bicolor]
Length = 728
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMD 198
LTEEE R D + LG+ G+ +++++H HWK E V++ +
Sbjct: 577 LTEEEKIMFRRIGRKMDGL--VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQARQIM 634
Query: 199 NVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
LE ++GG +I + ++LYRG+NY
Sbjct: 635 YTANLLEVETGGILIAVEKLTTSHAIILYRGKNY 668
>gi|255567361|ref|XP_002524660.1| conserved hypothetical protein [Ricinus communis]
gi|223536021|gb|EEF37679.1| conserved hypothetical protein [Ricinus communis]
Length = 260
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNIN 218
I +G+ GV ++ ++H HWK+ E V+I C + L S G +I R N
Sbjct: 125 ILVGRRGVFGGVVLNMHLHWKKHETVKIICKPCKPGQIHQYAEELARLSKGIVIDIRPNN 184
Query: 219 ILLLYRGRNY 228
++ YRG+NY
Sbjct: 185 SIIFYRGKNY 194
>gi|79417439|ref|NP_189171.2| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|75116513|sp|Q67XL4.1|Y3544_ARATH RecName: Full=Uncharacterized CRM domain-containing protein
At3g25440, chloroplastic; Flags: Precursor
gi|51971805|dbj|BAD44567.1| unknown protein [Arabidopsis thaliana]
gi|332643490|gb|AEE77011.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 444
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 192 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV 251
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 252 HEGNTIIMYRGKNY 265
>gi|9279724|dbj|BAB01314.1| unnamed protein product [Arabidopsis thaliana]
Length = 1115
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 863 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV 922
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 923 HEGNTIIMYRGKNY 936
>gi|145332683|ref|NP_001078207.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
gi|332643491|gb|AEE77012.1| uncharacterized CRM domain-containing protein [Arabidopsis
thaliana]
Length = 380
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 128 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV 187
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 188 HEGNTIIMYRGKNY 201
>gi|413950005|gb|AFW82654.1| hypothetical protein ZEAMMB73_283519 [Zea mays]
Length = 645
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
++H HWK E V++ C P + + L SGG +I N ++++RGRNY
Sbjct: 166 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNY 221
>gi|357134703|ref|XP_003568955.1| PREDICTED: uncharacterized protein LOC100832553 [Brachypodium
distachyon]
Length = 562
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
++H HWK E V++ C P + + L SGG ++ N ++++RGRNY
Sbjct: 181 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVVNIHNTKTIIMFRGRNY 236
>gi|242086871|ref|XP_002439268.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
gi|241944553|gb|EES17698.1| hypothetical protein SORBIDRAFT_09g003490 [Sorghum bicolor]
Length = 652
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
++H HWK E V++ C P + + L SGG +I N ++++RGRNY
Sbjct: 167 NMHMHWKFHETVQVCCDNFPKEKIKEMAAMLTRLSGGIVINIHNTKTIIMFRGRNY 222
>gi|297807647|ref|XP_002871707.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
gi|297317544|gb|EFH47966.1| ATCRS1/CRS1 [Arabidopsis lyrata subsp. lyrata]
Length = 727
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
LG+ GV +++ LH HWK E ++ + + LE +S G +I +
Sbjct: 600 LGRRGVFVGIMEGLHQHWKHREVAKVITMQKIFSRVVYTAKSLEAESNGVLISIEKLKEG 659
Query: 218 NILLLYRGRNYDPKDRPVIPLM 239
+ +L+YRG+NY RP LM
Sbjct: 660 HAILIYRGKNY---KRPSSKLM 678
>gi|359488800|ref|XP_002272412.2| PREDICTED: uncharacterized protein LOC100254349 [Vitis vinifera]
Length = 666
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG +I ++ ++++RGRNY PK
Sbjct: 167 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVINVHDVKTIIMFRGRNYRQPK 226
Query: 232 DRPVIPL 238
+ +IP+
Sbjct: 227 N--LIPI 231
>gi|115459160|ref|NP_001053180.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|21740788|emb|CAD41533.1| OSJNBb0091E11.2 [Oryza sativa Japonica Group]
gi|38346227|emb|CAE02049.2| OJ990528_30.7 [Oryza sativa Japonica Group]
gi|90265163|emb|CAH67731.1| H0522A01.2 [Oryza sativa Indica Group]
gi|113564751|dbj|BAF15094.1| Os04g0492900 [Oryza sativa Japonica Group]
gi|116310744|emb|CAH67539.1| H0425E08.7 [Oryza sativa Indica Group]
gi|125548841|gb|EAY94663.1| hypothetical protein OsI_16441 [Oryza sativa Indica Group]
Length = 479
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++ + N +
Sbjct: 200 VGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNTI 259
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 260 IMYRGKNY 267
>gi|125590852|gb|EAZ31202.1| hypothetical protein OsJ_15301 [Oryza sativa Japonica Group]
Length = 484
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ G+ ++ ++H HWK+ + +++ ++ + L SGG ++ + N +
Sbjct: 200 VGRRGIYQGVILNMHLHWKKHQTLQVIVKTFTPDEVKEIASELARLSGGIVLDIQEGNTI 259
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 260 IMYRGKNY 267
>gi|147838476|emb|CAN69859.1| hypothetical protein VITISV_037991 [Vitis vinifera]
Length = 371
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----YRNI 217
G+ GV +++ LH HWK E V++ + + LE +SGG ++ +
Sbjct: 118 FGRRGVFDGVIEGLHQHWKHREIVKVITMQRSFSQVLYTAKLLESESGGVLVSIDKLKEG 177
Query: 218 NILLLYRGRNY 228
+ +++YRG+NY
Sbjct: 178 HAIIIYRGKNY 188
>gi|449483922|ref|XP_004156733.1| PREDICTED: uncharacterized protein LOC101226279 [Cucumis sativus]
Length = 619
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG ++ ++ ++++RGRNY PK
Sbjct: 182 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPK 241
Query: 232 DRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETK---EMRNRGLH 273
+ +IP+ ++ + D K E+R +G++
Sbjct: 242 N--LIPINTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGIN 284
>gi|449450187|ref|XP_004142845.1| PREDICTED: uncharacterized protein LOC101215761 [Cucumis sativus]
Length = 619
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY-DPK 231
++H HWK E V++ C P + + L SGG ++ ++ ++++RGRNY PK
Sbjct: 182 NMHLHWKFHETVQVCCDNFPKEKIKEMATMLARLSGGIVVNIHDVKTIIMFRGRNYRQPK 241
Query: 232 DRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETK---EMRNRGLH 273
+ +IP+ ++ + D K E+R +G++
Sbjct: 242 N--LIPINTLTKRKALFKARFEQALDSQKLNIKKIEQELRRKGIN 284
>gi|449438181|ref|XP_004136868.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 352
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
LG+ GV ++ ++H HWK+ E V++ C + L S G +I + N +
Sbjct: 219 LGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSI 278
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 279 IFYRGKNY 286
>gi|449479099|ref|XP_004155504.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 290
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
LG+ GV ++ ++H HWK+ E V++ C + L S G +I + N +
Sbjct: 157 LGRRGVFGGVVLNMHMHWKKHETVKVICKPCKPGQVHEYAEELTRLSKGIVIDIKPNNSI 216
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 217 IFYRGKNY 224
>gi|359478175|ref|XP_002266278.2| PREDICTED: uncharacterized protein LOC100250974 [Vitis vinifera]
Length = 711
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGK-IIYRNINIL 220
+G+ GV ++ ++H HWK+ E V++ C + + SGG I + +
Sbjct: 475 VGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDTI 534
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 535 IFYRGKNY 542
>gi|310779504|ref|YP_003967837.1| hypothetical protein [Ilyobacter polytropus DSM 2926]
gi|309748827|gb|ADO83489.1| protein of unknown function UPF0044 [Ilyobacter polytropus DSM
2926]
Length = 101
Score = 38.9 bits (89), Expect = 3.5, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINI 219
+ +GK G++HN+++ + E +++K L +D V F L EK+G +++
Sbjct: 22 VRIGKDGMSHNLVESFLQAIESRELIKVKILQNSEVDKKEVAFELAEKTGSELVGIIGKT 81
Query: 220 LLLYRGRNYDPKDRPVIPLML 240
L+ Y+ + KD PV+ +L
Sbjct: 82 LIFYK----ENKDNPVVSEVL 98
>gi|356511313|ref|XP_003524371.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Glycine max]
Length = 282
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 139 LTEEE---IAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTL 195
LTEEE + ER +H + +G+ GV ++ ++H HWK E V++ C
Sbjct: 125 LTEEERHYLKRTGERKKH-----YVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPG 179
Query: 196 DMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
+ L S G +I + N ++ YRG+NY
Sbjct: 180 QVHEYAEELARLSKGIVIDIKPNNTIIFYRGKNY 213
>gi|115467732|ref|NP_001057465.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|113595505|dbj|BAF19379.1| Os06g0304500 [Oryza sativa Japonica Group]
gi|125596971|gb|EAZ36751.1| hypothetical protein OsJ_21087 [Oryza sativa Japonica Group]
Length = 348
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNIN 218
+ +G+ GV ++ ++H HWK+ E V++ C + L S G +I + N
Sbjct: 201 VPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNN 260
Query: 219 ILLLYRGRNY 228
++ YRG+NY
Sbjct: 261 TIIFYRGKNY 270
>gi|147820521|emb|CAN67658.1| hypothetical protein VITISV_012474 [Vitis vinifera]
Length = 375
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGK-IIYRNINIL 220
+G+ GV ++ ++H HWK+ E V++ C + + SGG I + +
Sbjct: 139 VGRRGVFGGVILNMHMHWKKHETVKVICKPCKPGQVHEYANEIARLSGGTPIQIIGDDTI 198
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 199 IFYRGKNY 206
>gi|297743805|emb|CBI36688.3| unnamed protein product [Vitis vinifera]
Length = 332
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 29/156 (18%)
Query: 94 REPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEEERNRV----LGDPLTEEEIAELV- 148
R+P+R S G + R A E +R++F+ E+ R+ L + L E+ +L
Sbjct: 16 RDPRRLSVKGKKKKQR-------FANAE-ERIKFKLEKARIKEALLIERLKRYEVPKLQG 67
Query: 149 -----------ERYRHSDCARQ----INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVP 193
ER+ A++ + +G+ GV ++ ++H HWK+ E V++ C
Sbjct: 68 PIVQPVNLTGEERFYMKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVICKPCK 127
Query: 194 TLDMDNVCFHLEEKSGGK-IIYRNINILLLYRGRNY 228
+ + SGG I + ++ YRG+NY
Sbjct: 128 PGQVHEYANEIARLSGGTPIQIIGDDTIIFYRGKNY 163
>gi|302766798|ref|XP_002966819.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
gi|300164810|gb|EFJ31418.1| hypothetical protein SELMODRAFT_408011 [Selaginella moellendorffii]
Length = 672
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 161 NLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTL-DMDNVCFHLEEKSGGKII-YRNIN 218
++GK G+ ++ ++H +WK E VRIKC ++ + + L SGG ++
Sbjct: 145 SVGKRGIYGGVIHNIHTNWKFHETVRIKCPRHNSMEETRRIGAELARLSGGIVLDVLEDR 204
Query: 219 ILLLYRGRNY 228
++++RG+NY
Sbjct: 205 TVIMFRGKNY 214
>gi|125555042|gb|EAZ00648.1| hypothetical protein OsI_22670 [Oryza sativa Indica Group]
Length = 304
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNIN 218
+ +G+ GV ++ ++H HWK+ E V++ C + L S G +I + N
Sbjct: 177 VPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCRPGQVYEYAEELTRLSKGTVIDIKPNN 236
Query: 219 ILLLYRGRNY 228
++ YRG+NY
Sbjct: 237 TIIFYRGKNY 246
>gi|115442347|ref|NP_001045453.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|57900096|dbj|BAD88158.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900276|dbj|BAD87109.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|113534984|dbj|BAF07367.1| Os01g0958400 [Oryza sativa Japonica Group]
gi|215768161|dbj|BAH00390.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189771|gb|EEC72198.1| hypothetical protein OsI_05277 [Oryza sativa Indica Group]
gi|222619906|gb|EEE56038.1| hypothetical protein OsJ_04827 [Oryza sativa Japonica Group]
Length = 415
Score = 38.5 bits (88), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN-IL 220
+G+ GV ++ ++H HWK+ E V++ C + + SGG I N +
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 253 VFYRGKNY 260
>gi|162459283|ref|NP_001105859.1| LOC732768 [Zea mays]
gi|89212802|gb|ABD63903.1| CFM6 [Zea mays]
gi|413918693|gb|AFW58625.1| hypothetical protein ZEAMMB73_217436 [Zea mays]
Length = 338
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 160 INLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNIN 218
+ +G+ GV ++ ++H HWK+ E V++ C + L S G +I + N
Sbjct: 189 VPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCRPGQVYEYAEELTRLSKGTVIDIKPNN 248
Query: 219 ILLLYRGRNY 228
++ YRG+NY
Sbjct: 249 TIMFYRGKNY 258
>gi|449458069|ref|XP_004146770.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
gi|449516505|ref|XP_004165287.1| PREDICTED: uncharacterized CRM domain-containing protein At3g25440,
chloroplastic-like [Cucumis sativus]
Length = 500
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-YRNINIL 220
+G+ G+ ++ ++H HWK+ + V++ ++ + L +GG ++ + +
Sbjct: 232 VGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGLVLDIHEEDTI 291
Query: 221 LLYRGRNY 228
++YRG+NY
Sbjct: 292 IMYRGKNY 299
>gi|57900098|dbj|BAD88160.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900278|dbj|BAD87111.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
Length = 394
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN-IL 220
+G+ GV ++ ++H HWK+ E V++ C + + SGG I N +
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 253 VFYRGKNY 260
>gi|357478871|ref|XP_003609721.1| CRM domain-containing protein, putative [Medicago truncatula]
gi|355510776|gb|AES91918.1| CRM domain-containing protein, putative [Medicago truncatula]
Length = 399
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 139 LTEEE---IAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTL 195
LTEEE + E+ +H + +G+ GV ++ ++H HWK E V++ C
Sbjct: 252 LTEEERHYLKRTGEKKKH-----YVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPG 306
Query: 196 DMDNVCFHLEEKSGGKII-YRNINILLLYRGRNY 228
L S G +I + +I++ YRG+NY
Sbjct: 307 QAHEYAEELARLSKGIVIDIKPNSIIIFYRGKNY 340
>gi|57900097|dbj|BAD88159.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|57900277|dbj|BAD87110.1| group II intron splicing factor CRS1-like [Oryza sativa Japonica
Group]
gi|215695021|dbj|BAG90212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 417
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 162 LGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN-IL 220
+G+ GV ++ ++H HWK+ E V++ C + + SGG I N +
Sbjct: 193 VGRRGVFGGVILNMHLHWKKHETVKVICKPCKPGQIQEYASEIARLSGGIPINTIGNDTI 252
Query: 221 LLYRGRNY 228
+ YRG+NY
Sbjct: 253 VFYRGKNY 260
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,173,417,302
Number of Sequences: 23463169
Number of extensions: 278952355
Number of successful extensions: 760797
Number of sequences better than 100.0: 270
Number of HSP's better than 100.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 759971
Number of HSP's gapped (non-prelim): 667
length of query: 359
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 216
effective length of database: 9,003,962,200
effective search space: 1944855835200
effective search space used: 1944855835200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)