BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041912
         (359 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1FY2|A Chain A, Aspartyl Dipeptidase
 pdb|1FYE|A Chain A, Aspartyl Dipeptidase (Anisotropic B-Factor Refinement)
          Length = 229

 Score = 31.2 bits (69), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 26/57 (45%)

Query: 243 PYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKT 299
           P A I    +  V  G TF+  KE R RGL +P   ++ R  +Y+   A    A  T
Sbjct: 73  PLAAIEKAEIIIVGGGNTFQLLKESRERGLLAPMADRVKRGALYIGWSAGANLACPT 129


>pdb|2ZMD|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain T686a
           Mutant In Complex With Sp600125 Inhibitor
          Length = 390

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNR--GLHSP 275
           DPK R  IP +L  PY  I    V  +A G T EE K +  +  GL+SP
Sbjct: 308 DPKQRISIPELLAHPYVQIQTHPVNQMAKGTT-EEMKYVLGQLVGLNSP 355


>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1
           Catalytic Domain Apo Form
          Length = 390

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNR--GLHSP 275
           DPK R  IP +L  PY  I    V  +A G T EE K +  +  GL+SP
Sbjct: 308 DPKQRISIPELLAHPYVQIQTHPVNQMAKGTT-EEMKYVLGQLVGLNSP 355


>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain
          Length = 343

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNR--GLHSP 275
           DPK R  IP +L  PY  I    V  +A G T EE K +  +  GL+SP
Sbjct: 261 DPKQRISIPELLAHPYVQIQTHPVNQMAKGTT-EEMKYVLGQLVGLNSP 308


>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715
          Length = 317

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNR--GLHSP 275
           DPK R  IP +L  PY  I    V  +A G T EE K +  +  GL+SP
Sbjct: 264 DPKQRISIPELLAHPYVQIQTHPVNQMAKGTT-EEMKYVLGQLVGLNSP 311


>pdb|1SFS|A Chain A, 1.07 A Crystal Structure Of An Uncharacterized B.
           Stearothermophilus Protein
          Length = 240

 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGV-YVNVVAKVREA 296
           Y   V NV++GLT +E   +RN G+   P+    R  V Y N     R A
Sbjct: 59  YLSEVPNVSEGLTRDEIVRIRNYGVKVLPIYNAFREAVGYANGQVAARNA 108


>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
           Complex With Atp
 pdb|3HMO|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
           Complex With The Inhibitor Staurosporine
 pdb|3HMP|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In
           Complex With A Quinazolin Ligand Compound 4
          Length = 342

 Score = 27.7 bits (60), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFE 262
           DPK R  IP +L  PY  I    V  +A G T E
Sbjct: 308 DPKQRISIPELLAHPYVQIQTHPVNQMAKGTTEE 341


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,195,703
Number of Sequences: 62578
Number of extensions: 475163
Number of successful extensions: 1139
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1130
Number of HSP's gapped (non-prelim): 11
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)