BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041912
(359 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 505 bits (1300), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/346 (70%), Positives = 284/346 (82%), Gaps = 8/346 (2%)
Query: 10 KTLNLIPVKKQNLLLFTQIHSSSEYIDD-DPPFSP-------KRQKPQNPRTQQNPPVPS 61
++L L K L + + DD DPPFSP ++K + +Q+
Sbjct: 6 RSLTLAKEPKDLFLFLCNLRARCVSTDDYDPPFSPLSKPTKPPKEKKKQKTKKQDQSSEL 65
Query: 62 SNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKE 121
N K+P+ SDLPFDF+YSYSE NP +EPIGFREPKRFSPFGPGRLDRKWTGTTALA E
Sbjct: 66 VNDLKIPVISDLPFDFRYSYSETNPEIEPIGFREPKRFSPFGPGRLDRKWTGTTALASPE 125
Query: 122 VDRVRFEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKR 181
+D+ ++ EER RVLG+ LTE+E+ EL+ERYRHSDC RQINLGK GVTHNM+DD+HNHWK+
Sbjct: 126 IDQSQWVEERARVLGETLTEDEVTELIERYRHSDCTRQINLGKGGVTHNMIDDIHNHWKK 185
Query: 182 AEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLW 241
AEAVRIKCLGVPTLDMDN+CFHLEEKSGGKI+YRNINIL+LYRGRNYDPK RP+IPLMLW
Sbjct: 186 AEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKSRPIIPLMLW 245
Query: 242 RPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEE 301
+P+ PIYP++VKNVADGL FEETKEMRNRGLHSP LMKLTRNGVYVNVV +VRE F+TEE
Sbjct: 246 KPHPPIYPRLVKNVADGLEFEETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEE 305
Query: 302 VVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQA 347
+VRLDC+HVG +DCK+IGVKL+++VPCVPILFKDEQIILWRGK
Sbjct: 306 IVRLDCTHVGMSDCKRIGVKLKEMVPCVPILFKDEQIILWRGKRTG 351
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 462 bits (1190), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/286 (77%), Positives = 248/286 (86%)
Query: 68 PLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRF 127
P SDLPFDF+YSYSE +PA PIGFREP RFSPFGPGRLDR W G A A +
Sbjct: 74 PASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAARGEGAGAA 133
Query: 128 EEERNRVLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRI 187
R VLG+PL EEE+A+LVERYRHSDC+RQINLGK GVTHNM+DD+HNHWKRAEAVRI
Sbjct: 134 ATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRI 193
Query: 188 KCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPI 247
KCLGVPTLDMDN+CFHLE+K+GGK+IYRNINIL+LYRGRNYDPK RP IPLMLW+P API
Sbjct: 194 KCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLMLWKPLAPI 253
Query: 248 YPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC 307
YP++V+NVADGLTFE+TKE+RN GL+S PLMKLTRNGVYVNVV +VREAFKT EVVRLDC
Sbjct: 254 YPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDC 313
Query: 308 SHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQAMDSDPL 353
SHVG++DCKKIGVKLRDLVPCVP+LFKDEQIILWRGK + +S L
Sbjct: 314 SHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENSVSL 359
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 325 bits (834), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 160/292 (54%), Positives = 209/292 (71%), Gaps = 17/292 (5%)
Query: 70 KSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE 129
+SDLPFDF++SY+E++P +PIG REPK +SPFGPGRLDR WTG A A R +
Sbjct: 73 RSDLPFDFRFSYTESSPGDKPIGLREPK-YSPFGPGRLDRPWTGLCAPAVDTTLRDAHAD 131
Query: 130 ERNR----------------VLGDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLD 173
+ VLG+PLT E A LV + + S +QINLG+ G+THNML+
Sbjct: 132 DPAPAAERELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLN 191
Query: 174 DLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDR 233
D+HNHWK EAVR+KCLGVPT+DM NVC LE+K+GG II+R+ L+LYRGR+Y+PK R
Sbjct: 192 DIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLILYRGRHYNPKKR 251
Query: 234 PVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKV 293
PVIPLMLW+P P+YP+++K +GLT EETKEMR +GL+ P L KL +NG Y ++V V
Sbjct: 252 PVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMV 311
Query: 294 REAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
R+AF T+E+VR+D + +D +KIGVKLRDLVPC+ + F EQII+WRGK+
Sbjct: 312 RDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVWRGKD 363
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 278 MKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQ 337
+ L R+G+ N++ + +K +E VR+ C V T D + + +L D + I Q
Sbjct: 178 INLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQ 237
Query: 338 IILWRGKEQAMDSDPLI 354
+IL+RG+ P+I
Sbjct: 238 LILYRGRHYNPKKRPVI 254
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 162/297 (54%), Positives = 211/297 (71%), Gaps = 12/297 (4%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA- 118
PSS + SDLPFDF++SY+E+ V PIG REPK +SPFGP RLDR+WTG A A
Sbjct: 70 PSSLEGVKTVHSDLPFDFRFSYTESCSNVRPIGLREPK-YSPFGPDRLDREWTGVCAPAV 128
Query: 119 -PK--EVDRV---RFEEERNRV----LGDPLTEEEIAELVERYRHSDCARQINLGKWGVT 168
PK VD V + EE+R +V G LTE E LVE + + RQ+NLG+ G+T
Sbjct: 129 NPKVESVDGVEDPKLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLT 188
Query: 169 HNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
HNML+D++NHWK AEAVR+KCLGVPTLDM NV FHLE+K+ G+++ ++ L+LYRGRNY
Sbjct: 189 HNMLNDVYNHWKHAEAVRVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNY 248
Query: 229 DPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVN 288
DPK RP IPLMLW+P+ P+YP+++K DGL+ +ETK MR +GL P L KL +NG Y +
Sbjct: 249 DPKKRPKIPLMLWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGS 308
Query: 289 VVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKE 345
+V VR+AF E+VR+DC + D KKIG KLRDLVPC+ + F EQ+++WRGK+
Sbjct: 309 LVPMVRDAFLVSELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKD 365
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 277 bits (709), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 191/311 (61%), Gaps = 35/311 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTEA-PRARPVALREAP-FMPFGPEATPRPWTGRKPLPKSRKELPEFDSFVLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R +LG+PLT+EE++ELV+ S RQ+N+
Sbjct: 149 APGKKGVKPVQSPGPFLAGMEPRYQSVSREDILGEPLTKEEVSELVKGSLKSK--RQLNM 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+++H+HWKR +IKC GV T+DMDN+C LEEK GGK+I+R ++ L
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDMDNICHQLEEKVGGKVIHRQGGVIFL 266
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ + RP PLMLW+P AP+YP++V V GLT +E EMR RG PP+ KL +
Sbjct: 267 FRGRNYNYRTRPCFPLMLWKPVAPVYPRLVTKVPGGLTPDEATEMRTRGHQLPPICKLGK 326
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY N+V +VREAF+ ++VR+DCS + +DC+KIG KL+DLVPC+ + F+ E I++WR
Sbjct: 327 NGVYANLVNQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCILLSFEFEHILMWR 386
Query: 343 GKEQAMDSDPL 353
G + PL
Sbjct: 387 GSDWKSSLPPL 397
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 276 bits (707), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 137/302 (45%), Positives = 194/302 (64%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTAL-----APKEVDRVR-- 126
PF+FKYSY+E P V+P+ REP ++PFGP + R WTG L P+E D R
Sbjct: 150 PFEFKYSYTET-PKVKPLKLREPA-YAPFGPTTMGRPWTGRAPLPQSQKTPREFDSFRLP 207
Query: 127 -----------------------FEEERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
+ + +LG+PLT+EE+ ELV + RQ+N+G
Sbjct: 208 PVGKKGLKPVQKPGPFRPGVGPRYVYSKEEILGEPLTKEEVRELVTSCLKT--TRQLNMG 265
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G+THNML+++H+ WKR +IKC GV T+DMDNVC LEEK GGK+IYR +L L+
Sbjct: 266 RDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNVCEQLEEKIGGKVIYRRGGVLFLF 325
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P AP+YP++++ V +GLT +E MR +G P+ KL +N
Sbjct: 326 RGRNYNHRTRPRFPLMLWKPVAPVYPRLIQQVPEGLTRQEATNMRRKGRELMPICKLGKN 385
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVY ++V V+EAF+ E+VR+DC + +D +KIG KL+DLVPCV + F++EQI++WRG
Sbjct: 386 GVYCDLVKNVKEAFEVCELVRIDCQGMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRG 445
Query: 344 KE 345
+E
Sbjct: 446 RE 447
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 193/311 (62%), Gaps = 35/311 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAPKEVDRVRFEE---- 129
PF+F+YSY+E P P+ RE F PFGP R WTG L + F+
Sbjct: 91 PFEFQYSYTET-PRARPVALREAP-FLPFGPEVTPRPWTGRKPLPKSRKELPEFDSFMLP 148
Query: 130 ---------------------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINL 162
R VLG+PLT+EE+ ELV+ + RQ+N+
Sbjct: 149 PPGKKGVKPVQSPGPFLAGTEPRYQAASREEVLGEPLTKEEVDELVKATLKTK--RQLNI 206
Query: 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222
G+ G+THNML+++H+HWKR +IKC GV T+DMDNVC LEEK GGK+I+ ++ L
Sbjct: 207 GRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFL 266
Query: 223 YRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTR 282
+RGRNY+ + RP+ PLMLW+P AP+YP++VK + DGLT +E ++MR RG PP+ KL +
Sbjct: 267 FRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPICKLGK 326
Query: 283 NGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWR 342
NGVY+N+V +VREAF+ ++VR+DCS + +DC+KIG KL+DLVPC + F+ E I++WR
Sbjct: 327 NGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEHILMWR 386
Query: 343 GKEQAMDSDPL 353
G + PL
Sbjct: 387 GNDWKSSLPPL 397
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 273 bits (699), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/326 (44%), Positives = 196/326 (60%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 120 PSGLSFRLP---GAPFDFQFSYSEA-PRAPPLAIREPA-FLPFAPPTMPRPWTGKAPLLT 174
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE + RV + R+R VLG+PL
Sbjct: 175 KEEKARRRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGRSREEVLGEPL 234
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 235 TPSEVRALVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 292
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGR+YDPK RP PLMLW+P P+YPK++K DG
Sbjct: 293 LCYHLEEKSGGKVIHRVGGVVFLYRGRHYDPKTRPRYPLMLWKPATPVYPKLIKEAPDGF 352
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR +G P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 353 TKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDYKKIG 412
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F DEQI++ RGKE
Sbjct: 413 AKLRDLVPCVLLSFDDEQILMHRGKE 438
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 270 bits (689), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 199/326 (61%), Gaps = 47/326 (14%)
Query: 60 PSSNTNKLPLKSDLPFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALAP 119
PS + +LP PFDF++SYSE P P+ REP F PF P + R WTG L
Sbjct: 116 PSGLSFRLP---GAPFDFRFSYSEC-PRAPPVAIREPA-FLPFAPPTMPRPWTGKAPLLT 170
Query: 120 KE--------------------------------------VDRVRFEEERNR--VLGDPL 139
KE + RV + R+R VLG+PL
Sbjct: 171 KEEKARRRGVRLHTPLGEEAPRTVSAHGIMMEVRGRRKLDLARVSPGDGRSREEVLGEPL 230
Query: 140 TEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDN 199
T E+ +LV+ H RQ+N+G+ G+THNML+ +H HW+R E +++C GVPT+DM N
Sbjct: 231 TAAEVRDLVKP--HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKN 288
Query: 200 VCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGL 259
+C+HLEEKSGGK+I+R ++ LYRGRNY+P+ RP PLMLW+P P+YPK+++ +GL
Sbjct: 289 LCYHLEEKSGGKVIHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGL 348
Query: 260 TFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIG 319
T EE EMR RG P+ KL +NG+Y+ +V VR+AF+ ++V++DC + +D KKIG
Sbjct: 349 TKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIG 408
Query: 320 VKLRDLVPCVPILFKDEQIILWRGKE 345
KLRDLVPCV + F +EQI+++RGKE
Sbjct: 409 AKLRDLVPCVLLSFDNEQILMFRGKE 434
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/302 (44%), Positives = 191/302 (63%), Gaps = 34/302 (11%)
Query: 74 PFDFKYSYSENNPAVEPIGFREPKRFSPFGPGRLDRKWTGTTALA--------------- 118
PF+F++SYSE P V+P+G REP F PF P + R WTG L
Sbjct: 110 PFEFQFSYSET-PKVKPVGIREPA-FMPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPP 167
Query: 119 PKEVDRVRFEE---------------ERNRVLGDPLTEEEIAELVERYRHSDCARQINLG 163
P V++ E R VLG+PL E L++ + H + RQ+NLG
Sbjct: 168 PAGKSGVKYVEMPGPLPFGRYPKEGMNREEVLGEPLKRWEKGMLIKPHMHDN--RQVNLG 225
Query: 164 KWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLY 223
+ G THNML+ +H+HWKR +++C GVPT+DM+NVC LEEK+GG+II+R ++ L+
Sbjct: 226 RDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLF 285
Query: 224 RGRNYDPKDRPVIPLMLWRPYAPIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRN 283
RGRNY+ + RP PLMLW+P AP+YPK+++ V +GLT EE E R +G P+ KL++N
Sbjct: 286 RGRNYNYRTRPQYPLMLWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKN 345
Query: 284 GVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRG 343
GVYV++V VR+AF+ +V++DC + +D KKIG KL++LVPCV + F DEQI++WRG
Sbjct: 346 GVYVSLVKDVRDAFELSSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRG 405
Query: 344 KE 345
+E
Sbjct: 406 RE 407
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 159 QINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII----Y 214
+ LG+ GV +++++H HWK E V++ + LE ++GG +I +
Sbjct: 584 HVLLGRRGVFEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERF 643
Query: 215 RNINILLLYRGRNY 228
+ ++LYRG+NY
Sbjct: 644 TTSHAIILYRGKNY 657
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 129 EERNRVLGDPLTEEEIAELVERYRHSDCA--RQINLGKWGVTHNMLDDLHNHWKRAEAVR 186
E++ RV TE E EL ER R + R K G+T +++++ W + +
Sbjct: 142 EKKTRVPTRAETELEAGEL-ERLRRAARGKERWARAKKAGITDEVVEEVRGQWAKGQ--- 197
Query: 187 IKCLGVPTLD-----MDNVCFHLEEKSGGKIIYRNINILLLYRGRNY 228
+ GV ++ MD LE K+GG +++ I +YRG +Y
Sbjct: 198 -ELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGSSY 243
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/53 (22%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 179 WKRAEAVRIKC-LGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDP 230
W+++ ++ +G+ + + + +L+ +GG +I RN + +++YRG+++ P
Sbjct: 392 WEKSLIAKVAVKVGIQNTNHEQMARNLKRLTGGTVILRNKDYIIIYRGKDFLP 444
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 137 DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLD 196
+ LTEEE R D + LG+ G+ +++++H HWK E V++ T
Sbjct: 562 EHLTEEEKIMFRRIGRKMDGL--VLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQ 619
Query: 197 MDNVCFHLEEKSGGKII----YRNINILLLYRGRNY 228
+ LE ++GG +I + ++LYRG+NY
Sbjct: 620 IMYAASLLEVETGGILIAVEKLTTSHAIILYRGKNY 655
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 179 WKRAEAVRIKC-LGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDP 230
W+++ +I +G+ + + + ++L+ +GG +I RN + ++LYRG+++ P
Sbjct: 390 WEKSLIAKIAVKIGIQNTNNEQMAWNLKHLTGGTVILRNKDFIILYRGKDFLP 442
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 161 NLGKW------GVTHNMLDDLHNHWKRAE---AVRIKCLGVPTL--DMDNVCFHLEEKSG 209
+G+W GVT ++ ++ W E AVRI V L MD LE K+G
Sbjct: 184 GIGRWARAKKAGVTDEVVKEVRREWASGEELAAVRI----VEPLRRSMDRAREILEIKTG 239
Query: 210 GKIIYRNINILLLYRGRNYD 229
G +++ ++ +YRG Y
Sbjct: 240 GLVVWTKGDMHFVYRGSKYQ 259
Score = 32.7 bits (73), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 259 LTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTND---- 314
LT EE R G L+ L R G++ V+ ++ + +K +EVV++ T
Sbjct: 564 LTEEEKIMFRRIGRKMDGLVLLGRRGIFDGVIEEIHQHWKHKEVVKVITKQNQTRQIMYA 623
Query: 315 CKKIGVKLRDLVPCVPILFKDEQIILWRGK 344
+ V+ ++ V L IIL+RGK
Sbjct: 624 ASLLEVETGGILIAVEKLTTSHAIILYRGK 653
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query: 155 DCARQINL--------GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE 206
+C R+I L G+ GV +++ LH HWK E ++ + + LE
Sbjct: 578 ECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALET 637
Query: 207 KSGGKII----YRNINILLLYRGRNYDPKDRPVIPLM 239
+S G +I + + +L+YRG+NY RP LM
Sbjct: 638 ESNGVLISIEKLKEGHAILIYRGKNY---KRPSSKLM 671
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 111/269 (41%), Gaps = 43/269 (15%)
Query: 119 PKEVDRVRFEEERNRVLGDPLTEEEIAE--LVERYRH--SDCARQINLGKWGVTHNMLDD 174
P E + RF R + P T E I + L+ R R S + +N+ K GVT +++
Sbjct: 181 PWEREEERFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGVTELVVNK 240
Query: 175 LHNHWKRAEAVRIKCLGVPTL-DMDNVCFHLEEKSGGKIIYRNINILLLYRGR-NYDPKD 232
+ + WK E ++ VP +M+ +E K+GG ++ L++YRG +Y +
Sbjct: 241 IKSMWKLNELAMVR-FDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSYSSEG 299
Query: 233 RPVIPLMLW---------------------RPY---APIYPKVVK-----------NVAD 257
+ I L+ RP+ A + P+VV N
Sbjct: 300 QDEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRA 359
Query: 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTN-DCK 316
LT EE +RN P L RN + + + + ++ + ++ N + +
Sbjct: 360 KLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNE 419
Query: 317 KIGVKLRDLVPCVPILFKDEQIILWRGKE 345
++ +LR L V IL I+L+RGK+
Sbjct: 420 EMADELRYLTGGVLILRNKYLIVLYRGKD 448
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 156 CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKII-Y 214
C + +G+ G+ ++ ++H HWK+ + +++ ++ + L +GG ++
Sbjct: 192 CKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV 251
Query: 215 RNINILLLYRGRNY 228
N +++YRG+NY
Sbjct: 252 HEGNTIIMYRGKNY 265
>sp|Q5FQ87|ADEC_GLUOX Adenine deaminase OS=Gluconobacter oxydans (strain 621H) GN=ade
PE=3 SV=1
Length = 565
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 28/149 (18%)
Query: 88 VEPIGFREPKRFSPF--------GPGRLDRKWTGTT-ALAPKEVDRVRFEEERNRVLGDP 138
V P+G K P G GR DR G E R+ E+ VL DP
Sbjct: 358 VSPVGLESVKLPRPVTAQDMAVEGSGR-DRPVMGVIPGQIITEFLRLDLPEDHGHVLPDP 416
Query: 139 LTEEEIAEL--VERYRHSD-----CARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLG 191
E+++A++ V R+ H+D R L + + ++ D HN I +G
Sbjct: 417 --EQDVAKVCVVARHGHNDNIGRGFVRGFGLKEGALASSVGHDSHN---------ICVVG 465
Query: 192 VPTLDMDNVCFHLEEKSGGKIIYRNINIL 220
DM HLE+ GG + RN +L
Sbjct: 466 TSDADMACAVNHLEKTGGGFVAVRNGQVL 494
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,908,779
Number of Sequences: 539616
Number of extensions: 6731423
Number of successful extensions: 17578
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17492
Number of HSP's gapped (non-prelim): 66
length of query: 359
length of database: 191,569,459
effective HSP length: 119
effective length of query: 240
effective length of database: 127,355,155
effective search space: 30565237200
effective search space used: 30565237200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)