Query 041912
Match_columns 359
No_of_seqs 272 out of 798
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 12:00:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10343 RNA-binding protein Y 100.0 1.1E-27 2.3E-32 198.9 12.7 89 137-227 1-89 (97)
2 PF01985 CRS1_YhbY: CRS1 / Yhb 99.9 1.1E-27 2.3E-32 193.1 11.2 84 139-224 1-84 (84)
3 TIGR00253 RNA_bind_YhbY putati 99.9 2.5E-27 5.4E-32 196.0 12.9 88 139-228 1-88 (95)
4 TIGR00253 RNA_bind_YhbY putati 99.9 1.8E-26 3.8E-31 191.0 10.9 88 259-346 1-88 (95)
5 PRK10343 RNA-binding protein Y 99.9 3.7E-26 8E-31 189.7 10.9 88 258-345 2-89 (97)
6 PF01985 CRS1_YhbY: CRS1 / Yhb 99.9 2.5E-26 5.4E-31 185.1 8.5 84 259-342 1-84 (84)
7 COG1534 Predicted RNA-binding 99.9 2.1E-25 4.5E-30 184.9 11.9 89 138-228 1-89 (97)
8 COG1534 Predicted RNA-binding 99.9 2E-24 4.3E-29 179.1 10.2 87 258-344 1-87 (97)
9 KOG1990 Poly(A)-specific exori 99.9 1.8E-22 3.8E-27 210.5 8.6 254 99-358 130-485 (564)
10 KOG1990 Poly(A)-specific exori 99.7 4.6E-17 9.9E-22 170.1 8.5 213 136-352 11-271 (564)
11 PF04472 DUF552: Protein of un 49.9 78 0.0017 24.7 6.6 49 291-339 13-64 (73)
12 TIGR01290 nifB nitrogenase cof 49.7 3.3E+02 0.0071 28.5 14.3 61 286-347 173-236 (442)
13 COG2390 DeoR Transcriptional r 47.8 2.7E+02 0.0059 28.1 11.6 135 165-332 36-176 (321)
14 PF04472 DUF552: Protein of un 47.0 1.3E+02 0.0028 23.4 7.4 54 172-226 12-68 (73)
15 PF03641 Lysine_decarbox: Poss 45.6 81 0.0017 27.2 6.6 36 265-300 74-110 (133)
16 PF01918 Alba: Alba; InterPro 44.0 63 0.0014 24.6 5.1 58 277-334 2-64 (70)
17 TIGR00730 conserved hypothetic 34.5 65 0.0014 29.5 4.5 58 266-324 118-177 (178)
18 PF10369 ALS_ss_C: Small subun 33.1 1.2E+02 0.0026 23.9 5.3 39 182-222 2-40 (75)
19 COG1888 Uncharacterized protei 32.4 83 0.0018 26.8 4.4 37 301-339 49-89 (97)
20 smart00492 HELICc3 helicase su 28.0 2.1E+02 0.0046 25.0 6.5 47 289-335 3-57 (141)
21 PF11272 DUF3072: Protein of u 27.1 1.3E+02 0.0028 23.5 4.2 41 135-180 11-52 (57)
22 PF06335 DUF1054: Protein of u 26.3 60 0.0013 30.8 2.9 41 269-324 74-114 (194)
23 PF01918 Alba: Alba; InterPro 26.2 2.7E+02 0.0058 21.1 6.1 56 159-214 2-62 (70)
24 PF11608 Limkain-b1: Limkain b 24.9 64 0.0014 27.2 2.5 25 198-222 20-44 (90)
25 PRK05465 ethanolamine ammonia- 23.8 3.2E+02 0.0069 27.2 7.4 79 135-218 90-179 (260)
26 cd08619 PI-PLCXDc_plant Cataly 23.7 2.3E+02 0.0049 28.5 6.4 63 285-347 92-170 (285)
27 cd05796 Ribosomal_P0_like Ribo 23.5 69 0.0015 28.8 2.7 68 256-325 25-99 (163)
28 COG1098 VacB Predicted RNA bin 22.1 71 0.0015 28.6 2.3 27 167-193 38-64 (129)
29 PF04019 DUF359: Protein of un 21.1 2.2E+02 0.0047 24.9 5.1 51 163-215 42-92 (121)
30 cd08619 PI-PLCXDc_plant Cataly 20.7 2.4E+02 0.0052 28.2 6.0 63 167-229 92-170 (285)
No 1
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=99.95 E-value=1.1e-27 Score=198.92 Aligned_cols=89 Identities=16% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE
Q 041912 137 DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRN 216 (359)
Q Consensus 137 ~~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqri 216 (359)
+.||++|+++||++||+ |+|+|+|||+|||++|+++|+++|++||||||++++++.++.++++++|++.|||++||+|
T Consensus 1 m~Lt~kqr~~LR~~ah~--l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~I 78 (97)
T PRK10343 1 MNLSTKQKQHLKGLAHP--LKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVI 78 (97)
T ss_pred CCCCHHHHHHHHHhcCC--CCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeee
Confidence 47999999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeCCC
Q 041912 217 INILLLYRGRN 227 (359)
Q Consensus 217 G~~iVLYRgkn 227 (359)
|+++||||.+.
T Consensus 79 G~~~vlYR~~~ 89 (97)
T PRK10343 79 GKTLVLYRPTK 89 (97)
T ss_pred CcEEEEEecCC
Confidence 99999999985
No 2
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=99.95 E-value=1.1e-27 Score=193.10 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEcc
Q 041912 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218 (359)
Q Consensus 139 LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG~ 218 (359)
||++|+++||++||+ ++|+|+|||+|+|++|+++|+++|++||||||+|.+++.++++++|++|+++|||++||++|+
T Consensus 1 Lt~ke~~~Lr~~a~~--l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~ 78 (84)
T PF01985_consen 1 LTSKERKFLRKLAHH--LKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGR 78 (84)
T ss_dssp --HHHHHHHHHHHTT--C--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETT
T ss_pred CCHHHHHHHHHHhcC--CCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECC
Confidence 799999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEe
Q 041912 219 ILLLYR 224 (359)
Q Consensus 219 ~iVLYR 224 (359)
++||||
T Consensus 79 ~~vlyR 84 (84)
T PF01985_consen 79 TIVLYR 84 (84)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999998
No 3
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=99.95 E-value=2.5e-27 Score=196.01 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEcc
Q 041912 139 LTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNIN 218 (359)
Q Consensus 139 LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG~ 218 (359)
||++|+++||++||+ |+|+|+|||+|||++|+++|+++|++||||||++++++.++.+++|++|++.|||++||+||+
T Consensus 1 Lt~kqr~~Lr~~ah~--l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~ 78 (95)
T TIGR00253 1 LTGKQKRHLRGKAHH--LKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGK 78 (95)
T ss_pred CCHHHHHHHHHHhCC--CCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEcc
Confidence 799999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCC
Q 041912 219 ILLLYRGRNY 228 (359)
Q Consensus 219 ~iVLYRgkny 228 (359)
++||||++..
T Consensus 79 ~~vlYR~~~~ 88 (95)
T TIGR00253 79 TIVLYRPTKE 88 (95)
T ss_pred EEEEEecCCc
Confidence 9999999754
No 4
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=99.94 E-value=1.8e-26 Score=190.97 Aligned_cols=88 Identities=18% Similarity=0.359 Sum_probs=86.2
Q ss_pred CCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEeCCEE
Q 041912 259 LTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQI 338 (359)
Q Consensus 259 LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~ig~~I 338 (359)
||+|||++||++||+|+|+++|||+|++++++++|++||++||||||.+++++.+|.+++|++|++.|||++||+||+++
T Consensus 1 Lt~kqr~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~~~~~~e~a~~i~~~~~a~~Vq~iG~~~ 80 (95)
T TIGR00253 1 LTGKQKRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATEDREDKTLIAEALVKETGACNVQVIGKTI 80 (95)
T ss_pred CCHHHHHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEEEEccEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCC
Q 041912 339 ILWRGKEQ 346 (359)
Q Consensus 339 VLYRgk~y 346 (359)
||||+++-
T Consensus 81 vlYR~~~~ 88 (95)
T TIGR00253 81 VLYRPTKE 88 (95)
T ss_pred EEEecCCc
Confidence 99999853
No 5
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=99.93 E-value=3.7e-26 Score=189.75 Aligned_cols=88 Identities=14% Similarity=0.258 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEeCCE
Q 041912 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQ 337 (359)
Q Consensus 258 ~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~ig~~ 337 (359)
.||++||+|||++||+++|+++|||+|++++++++|++|+++||||||.+++++.+|.+++|++|++.|||++||+||++
T Consensus 2 ~Lt~kqr~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~~~~~~~~e~~~~i~~~~~ae~Vq~IG~~ 81 (97)
T PRK10343 2 NLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKT 81 (97)
T ss_pred CCCHHHHHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecCCChhHHHHHHHHHHHHHCCEEEeeeCcE
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 041912 338 IILWRGKE 345 (359)
Q Consensus 338 IVLYRgk~ 345 (359)
+||||.+.
T Consensus 82 ~vlYR~~~ 89 (97)
T PRK10343 82 LVLYRPTK 89 (97)
T ss_pred EEEEecCC
Confidence 99999985
No 6
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=99.93 E-value=2.5e-26 Score=185.15 Aligned_cols=84 Identities=24% Similarity=0.384 Sum_probs=75.7
Q ss_pred CCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEeCCEE
Q 041912 259 LTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQI 338 (359)
Q Consensus 259 LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~ig~~I 338 (359)
||++|+++||++|++|+|+++|||+|++++++++|+++|++||||||.|++++..|.+++|++|++.|||++|+++|+++
T Consensus 1 Lt~ke~~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~iG~~~ 80 (84)
T PF01985_consen 1 LTSKERKFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEKHELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQVIGRTI 80 (84)
T ss_dssp --HHHHHHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHHHSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEEETTEE
T ss_pred CCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHhCCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEEECCEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 041912 339 ILWR 342 (359)
Q Consensus 339 VLYR 342 (359)
||||
T Consensus 81 vlyR 84 (84)
T PF01985_consen 81 VLYR 84 (84)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9998
No 7
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.1e-25 Score=184.89 Aligned_cols=89 Identities=21% Similarity=0.330 Sum_probs=85.7
Q ss_pred CCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEc
Q 041912 138 PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217 (359)
Q Consensus 138 ~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG 217 (359)
.||++|+++||+.||+ ++|+|+|||+|||++|+++|+++|++||||||++.+++.+|.+++|+.|++.+||++||+||
T Consensus 1 ~Lt~kq~~~Lrs~Ah~--l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG 78 (97)
T COG1534 1 MLTGKQKRFLRSKAHH--LKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIG 78 (97)
T ss_pred CCcHHHHHHHHHhhcc--CCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeee
Confidence 5899999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCC
Q 041912 218 NILLLYRGRNY 228 (359)
Q Consensus 218 ~~iVLYRgkny 228 (359)
+++||||.+..
T Consensus 79 ~~~vlyr~~~e 89 (97)
T COG1534 79 KTLVLYRESKE 89 (97)
T ss_pred eEEEEEecCcc
Confidence 99999995443
No 8
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2e-24 Score=179.11 Aligned_cols=87 Identities=18% Similarity=0.359 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEeCCE
Q 041912 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQ 337 (359)
Q Consensus 258 ~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~ig~~ 337 (359)
.||+||+++||++||+++|+|+|||||++++++++|++++++||||||.+++++.+|.+++|+.|++.+||++||++|++
T Consensus 1 ~Lt~kq~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~edr~eia~~l~~~~~a~lVqviG~~ 80 (97)
T COG1534 1 MLTGKQKRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAREDKKEIAEALAEETGAELVQVIGKT 80 (97)
T ss_pred CCcHHHHHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccchhhHHHHHHHHHHHhCCEEeeeeeeE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC
Q 041912 338 IILWRGK 344 (359)
Q Consensus 338 IVLYRgk 344 (359)
+||||.+
T Consensus 81 ~vlyr~~ 87 (97)
T COG1534 81 LVLYRES 87 (97)
T ss_pred EEEEecC
Confidence 9999944
No 9
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]
Probab=99.87 E-value=1.8e-22 Score=210.45 Aligned_cols=254 Identities=20% Similarity=0.270 Sum_probs=212.5
Q ss_pred CCCCCCCcCCCCCCCccCCCCCccccch----hh-hhccccCC--CCCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHH
Q 041912 99 FSPFGPGRLDRKWTGTTALAPKEVDRVR----FE-EERNRVLG--DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNM 171 (359)
Q Consensus 99 ~~~fGP~~~~r~W~g~~plpvd~~~~p~----~~-~~r~~~lg--~~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~v 171 (359)
|...||++.+ |+|..+++++++..|+ |. +.|..-+| ..|+..|...+|.++.. .+++|.+|.++.-+++
T Consensus 130 ~~~~~~~~~~--~~~~~~~~~~~dl~~~~i~~~~~p~r~l~~~~~~~l~~~~~~~~r~~~~~--~p~~~~~~~~~~~~~~ 205 (564)
T KOG1990|consen 130 LDSLGPELSD--WGGSDRLSVDADLLPEKIPDYMRPFRTLPVGSPPLLTSIESTLLRRLGYK--LPPHFALGRSRKLQGL 205 (564)
T ss_pred hhccCccccc--CCCCCCccchhhhchhhhhcccChhccCCCCChhhhhhHHHHHHHHhccc--ccccceehhccccccc
Confidence 6699999998 9999999999977555 43 23333345 58999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHcceEEEEec-CCChhhHHHHHHHH--HHHhCCeEEEEEccEEEEEeCCCCCC------C--CC-----Cc
Q 041912 172 LDDLHNHWKRAEAVRIKCL-GVPTLDMDNVCFHL--EEKSGGKIIYRNINILLLYRGRNYDP------K--DR-----PV 235 (359)
Q Consensus 172 l~~I~~awe~hELVKIK~~-g~~~~d~k~~ae~L--e~~TGg~vVqriG~~iVLYRgkny~p------~--~R-----p~ 235 (359)
.-.++..|++|+.+|+.+. +.+....+.++.++ ...||+.+|.++|-..++||+++|.. . .. |.
T Consensus 206 ~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg~~lv~hN~~~dv~y~~~~Fl~~lp~~l~~f~~~~~~fp~ 285 (564)
T KOG1990|consen 206 AVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTGKVLVLHNKLLDVMYRYKNFLSPLPSTLEEFTDSSSMFPN 285 (564)
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcCCeEEeeccceeeeeehhhcccccchhHHHhhhhhhhhhh
Confidence 9999999999999999998 77778888999999 89999999999999999999999973 1 11 11
Q ss_pred -------------cc--c---c--------ccCCC---------------------------------------------
Q 041912 236 -------------IP--L---M--------LWRPY--------------------------------------------- 244 (359)
Q Consensus 236 -------------~p--l---m--------lW~~~--------------------------------------------- 244 (359)
.. + + .|...
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 365 (564)
T KOG1990|consen 286 IEDTKRLAKLSEYQKLNLKATLLELARAKAKKEKEIERRSISSRLKLEFEKASSEKLTEAIFHKLEKAKKKLASANRILA 365 (564)
T ss_pred hHHHHHhhccccccchhhhhhHHHHHHHhcccccCcccccccchhhhhhhccchhhHHHHHHHHHhhhhhhccchhhhhh
Confidence 00 0 0 02110
Q ss_pred CCCCc---ccccccCCCCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCC-ccHHHHHH
Q 041912 245 APIYP---KVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGT-NDCKKIGV 320 (359)
Q Consensus 245 ~Pv~~---~l~~~~~e~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~-~d~keiA~ 320 (359)
.+.++ -+....++.+|.||+.+++++|..++..+.+|+.|++++++.++|.||+++|++|+.|..... .+.+..|.
T Consensus 366 ~~~~~~~~~~~~~~~e~~t~ee~~~~~k~g~k~~~~~~~~rrg~f~g~i~n~~l~wk~~e~~k~i~~~~~~~~~~~~~a~ 445 (564)
T KOG1990|consen 366 KLEDPKIPAELRYDPESITEEERLMLRKVGLKMKRRLLSGRRGVFDGVIENMHLHWKSRELVKVICKEKNLPSQVKQYAS 445 (564)
T ss_pred cccccccccccccchhhcChHHHHHHHHHHHhhccccccCCcccccceeecchhhhhhcccceeeeccccccHHHHHHHH
Confidence 00000 022256899999999999999999999999999999999999999999999999999977665 99999999
Q ss_pred HHHhhCCCeEEEEeC----CEEEEEcCCCCCCCCCCCCCCCC
Q 041912 321 KLRDLVPCVPILFKD----EQIILWRGKEQAMDSDPLIDPTN 358 (359)
Q Consensus 321 ~L~~~tg~~lVq~ig----~~IVLYRgk~y~~~~~~~~~~~~ 358 (359)
.++.++|+++|+++. +.|+.|||++|.++.. ++|.|
T Consensus 446 ~le~esg~~~v~~~~~~~~~ai~~yr~k~y~~p~~--l~P~~ 485 (564)
T KOG1990|consen 446 ALERESGGILVSIDKNPKGYAIIAYRGKNYDRPTS--LRPRN 485 (564)
T ss_pred HHHHHhCCceeeeccCCchhhHHHhhhhhccCCcc--cCchh
Confidence 999999999999975 4589999999999887 67654
No 10
>KOG1990 consensus Poly(A)-specific exoribonuclease PARN [Replication, recombination and repair]
Probab=99.68 E-value=4.6e-17 Score=170.12 Aligned_cols=213 Identities=17% Similarity=0.139 Sum_probs=186.9
Q ss_pred CCCCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCC-eEEE
Q 041912 136 GDPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGG-KIIY 214 (359)
Q Consensus 136 g~~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg-~vVq 214 (359)
...+.+.+..+||..|.. +.-.. +++|+|+.++++|+.-|+.+|+++++|....+.+|.++.+.++..||| -+||
T Consensus 11 ~~~~~~~~~~~l~~~~~~--~~~~~--~~~~~~~~~~~~~y~k~k~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~n~~~~ 86 (564)
T KOG1990|consen 11 ELTVDEADLRRLRLVATG--MTSAP--WKAGSTFDTVEAIYLKWKDNEEVYLKFQFGLCLFMKRSHEALEMSTGGNFVVW 86 (564)
T ss_pred HhhcCHHHHHHHhhhhcc--ceecc--cccccchhhhHHHHHHHHhhhhhheeeccccchhHHHhhhHhhccCCCceeee
Confidence 457889999999999976 54444 999999999999999999999999999988899999999999999999 8999
Q ss_pred EEccEEEEEeCCCCC-C-----CC---CCc-cc-----------------ccccCC--CCCCCcc---------------
Q 041912 215 RNINILLLYRGRNYD-P-----KD---RPV-IP-----------------LMLWRP--YAPIYPK--------------- 250 (359)
Q Consensus 215 riG~~iVLYRgkny~-p-----~~---Rp~-~p-----------------lmlW~~--~~Pv~~~--------------- 250 (359)
+.|.....|++..|. + +. .-. .+ .+.|+. ..|++.|
T Consensus 87 ~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~i~~~~~p~r~ 166 (564)
T KOG1990|consen 87 SRGDSISSPEFLCQRSPVDFVARQQENQAGKWPSELEKEKNELLDSLGPELSDWGGSDRLSVDADLLPEKIPDYMRPFRT 166 (564)
T ss_pred ecCccccCCccceeecchhhhhhhchhhhhhhHHHHHHHHHHHhhccCcccccCCCCCCccchhhhchhhhhcccChhcc
Confidence 999999999776665 2 22 111 01 134874 4677777
Q ss_pred cccccCCCCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEe-cCCCCccHHHHHHHH--HhhCC
Q 041912 251 VVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC-SHVGTNDCKKIGVKL--RDLVP 327 (359)
Q Consensus 251 l~~~~~e~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~v-l~n~~~d~keiA~~L--~~~tg 327 (359)
++.+++..||.+|..++|.+|...+++|.+|.++..++++..|+..|++++.+|+.+ ++.+......+|..+ ...+|
T Consensus 167 l~~~~~~~l~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~~~~rg~~~~~~~~~a~~l~~~~~tg 246 (564)
T KOG1990|consen 167 LPVGSPPLLTSIESTLLRRLGYKLPPHFALGRSRKLQGLAVAMVSFWEKHEFAKILIKRGVLETRKERMADELQELLLTG 246 (564)
T ss_pred CCCCChhhhhhHHHHHHHHhcccccccceehhccccccchhHHHHHHHHHHHHHHHHHhcchhhhccchHHHHHHHHhcC
Confidence 577889999999999999999999999999999999999999999999999999888 888899999999999 99999
Q ss_pred CeEEEEeCCEEEEEcCCCCCCCCCC
Q 041912 328 CVPILFKDEQIILWRGKEQAMDSDP 352 (359)
Q Consensus 328 ~~lVq~ig~~IVLYRgk~y~~~~~~ 352 (359)
+.||..++..+|+||+++|..+.+.
T Consensus 247 ~~lv~hN~~~dv~y~~~~Fl~~lp~ 271 (564)
T KOG1990|consen 247 KVLVLHNKLLDVMYRYKNFLSPLPS 271 (564)
T ss_pred CeEEeeccceeeeeehhhcccccch
Confidence 9999999999999999999995443
No 11
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=49.91 E-value=78 Score=24.66 Aligned_cols=49 Identities=8% Similarity=0.159 Sum_probs=36.4
Q ss_pred HHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHh---hCCCeEEEEeCCEEE
Q 041912 291 AKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRD---LVPCVPILFKDEQII 339 (359)
Q Consensus 291 ~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~---~tg~~lVq~ig~~IV 339 (359)
..|-++++....|=+++.....++.+++.+.|+. ..+|.+..+..+.++
T Consensus 13 ~~i~~~l~~g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~G~i~~i~~~~~l 64 (73)
T PF04472_consen 13 REIVDALREGKIVIVNLENLDDEEAQRILDFLSGAVYALDGDIQKISEKVFL 64 (73)
T ss_dssp HHHHHHHHTT--EEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEETTEEE
T ss_pred HHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHhchheeeCCEEEEEcCCEEE
Confidence 4488899999999999999888999999999986 679999988655444
No 12
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=49.67 E-value=3.3e+02 Score=28.50 Aligned_cols=61 Identities=3% Similarity=0.004 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHhhCCeEEEEe---cCCCCccHHHHHHHHHhhCCCeEEEEeCCEEEEEcCCCCC
Q 041912 286 YVNVVAKVREAFKTEEVVRLDC---SHVGTNDCKKIGVKLRDLVPCVPILFKDEQIILWRGKEQA 347 (359)
Q Consensus 286 ~~~lv~~I~~a~e~rELVKI~v---l~n~~~d~keiA~~L~~~tg~~lVq~ig~~IVLYRgk~y~ 347 (359)
++.++++|..+-+..-.|+|.+ .+.+..+..++++.+++ .|+..+.++....+=|-|..|.
T Consensus 173 ~e~~l~~l~~l~~~G~~v~v~~vlIpGiND~~i~~l~~~~~~-lg~~~~nl~p~~~~p~~G~~~~ 236 (442)
T TIGR01290 173 IERQLEGLEKLTERGILVKVNSVLIPGINDEHLVEVSKQVKE-LGAFLHNVMPLISAPEHGTVYG 236 (442)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEeeCCcCHHHHHHHHHHHHh-CCCcEEEeecCCCccccCCccC
Confidence 5667788887777667788875 45666888889888876 4776666665444434466663
No 13
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=47.81 E-value=2.7e+02 Score=28.14 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=85.7
Q ss_pred CCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEccEEEEEeCCCCCCCCCCcccccccCCC
Q 041912 165 WGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLLYRGRNYDPKDRPVIPLMLWRPY 244 (359)
Q Consensus 165 ~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG~~iVLYRgkny~p~~Rp~~plmlW~~~ 244 (359)
=|++...+.-+-+.-+..-+|||++. ....+.-++.++|+++.|-.=+.+.-.
T Consensus 36 LgiSR~~v~rlL~~Ar~~GiV~I~i~-~~~~~~~~Le~~L~~~fgL~~a~VVp~-------------------------- 88 (321)
T COG2390 36 LGISRATVSRLLAKAREEGIVKISIN-SPVEGCLELEQQLKERFGLKEAIVVPS-------------------------- 88 (321)
T ss_pred hCCCHHHHHHHHHHHHHCCeEEEEeC-CCCcchHHHHHHHHHhcCCCeEEEEcC--------------------------
Confidence 47888999999999999999999999 666777789999999998765554432
Q ss_pred CCCCcccccccCCCCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEe-cCCCC-----ccHHHH
Q 041912 245 APIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDC-SHVGT-----NDCKKI 318 (359)
Q Consensus 245 ~Pv~~~l~~~~~e~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~v-l~n~~-----~d~kei 318 (359)
+.+-.......|-.-=..||.+.=.+-+ ++-||-+.--..+++++.-.. +.=+++.. .|.-. .++..+
T Consensus 89 ---~~~~~~~~~~~lg~aaA~~l~~~l~~gd-vigV~wGrTv~a~~~~l~~~~--~~~~~vV~l~GG~~~~~~~~~~~~~ 162 (321)
T COG2390 89 ---DSDADDSILRRLGRAAAQYLESLLKPGD-VIGVGWGRTLSAVVDNLPPAP--LRDVKVVQLTGGVGHADGSYNANTI 162 (321)
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHhCCCCC-EEEEeccHHHHHHHHhcCcCc--cCCeEEEECCCCCCCCccccCHHHH
Confidence 1110011112233333455555544444 677764443444444444332 22255554 44433 788999
Q ss_pred HHHHHhhCCCeEEE
Q 041912 319 GVKLRDLVPCVPIL 332 (359)
Q Consensus 319 A~~L~~~tg~~lVq 332 (359)
+..+++.++|.-..
T Consensus 163 ~~~~A~k~~~~~~~ 176 (321)
T COG2390 163 ALRLAEKLGAESYL 176 (321)
T ss_pred HHHHHHHhCCcEEe
Confidence 99999999987543
No 14
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=46.98 E-value=1.3e+02 Score=23.39 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHH---HhCCeEEEEEccEEEEEeCC
Q 041912 172 LDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE---KSGGKIIYRNINILLLYRGR 226 (359)
Q Consensus 172 l~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~---~TGg~vVqriG~~iVLYRgk 226 (359)
+.+|-++++....|=+.+......+.+++.+.|+. ..+|.+.....+ ++|+=++
T Consensus 12 ~~~i~~~l~~g~~Vivnl~~l~~~~~~Ri~Dfl~G~~~al~G~i~~i~~~-~~l~~P~ 68 (73)
T PF04472_consen 12 AREIVDALREGKIVIVNLENLDDEEAQRILDFLSGAVYALDGDIQKISEK-VFLLTPK 68 (73)
T ss_dssp HHHHHHHHHTT--EEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEETT-EEEEE--
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHhchheeeCCEEEEEcCC-EEEEECC
Confidence 45688999999999999999888889999999875 668888777444 5555443
No 15
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=45.63 E-value=81 Score=27.21 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHhccCCCC-CceecccCCccHHHHHHHHHHHhhC
Q 041912 265 KEMRNRGLHSP-PLMKLTRNGVYVNVVAKVREAFKTE 300 (359)
Q Consensus 265 ~~LR~la~~l~-pi~~LGKnGv~~~lv~~I~~a~e~r 300 (359)
-.+.+++..-+ |++.++.+|.|+.+++.++...+..
T Consensus 74 ~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g 110 (133)
T PF03641_consen 74 LTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEG 110 (133)
T ss_dssp HHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTT
T ss_pred HHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCC
Confidence 34577888888 9999999999999999998666543
No 16
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=44.02 E-value=63 Score=24.57 Aligned_cols=58 Identities=9% Similarity=-0.000 Sum_probs=49.1
Q ss_pred ceecccCCccHHHHHHHHHHH-----hhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEe
Q 041912 277 LMKLTRNGVYVNVVAKVREAF-----KTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK 334 (359)
Q Consensus 277 i~~LGKnGv~~~lv~~I~~a~-----e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~i 334 (359)
.+.|+++.=+...+..+..+| ...+-|.|.-.|..-.-.=.+|+.+++..+..++|+.
T Consensus 2 ~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~ 64 (70)
T PF01918_consen 2 EIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVN 64 (70)
T ss_dssp EEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 467888899999999999999 8999999999999999999999999999876666654
No 17
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=34.49 E-value=65 Score=29.54 Aligned_cols=58 Identities=10% Similarity=0.228 Sum_probs=39.8
Q ss_pred HHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCC--CCccHHHHHHHHHh
Q 041912 266 EMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHV--GTNDCKKIGVKLRD 324 (359)
Q Consensus 266 ~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n--~~~d~keiA~~L~~ 324 (359)
.+.+++.+-+|++.++-+|.|+.+++.++...+.. .+.=..... ..+|++++.+.|++
T Consensus 118 ~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~g-fi~~~~~~~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 118 TWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEG-FISESHLKLIHVVSRPDELIEQVQN 177 (178)
T ss_pred HHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCC-CCCHHHcCcEEEcCCHHHHHHHHHh
Confidence 35778888999999999999999999888555442 211111100 14788888888764
No 18
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=33.09 E-value=1.2e+02 Score=23.93 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=25.0
Q ss_pred cceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEccEEEE
Q 041912 182 AEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNINILLL 222 (359)
Q Consensus 182 hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG~~iVL 222 (359)
+||+=||+.. ..+...-..+|++..+|.+|....+++++
T Consensus 2 rEl~LiKV~~--~~~~r~ei~~l~~~f~a~ivd~~~~~~ii 40 (75)
T PF10369_consen 2 RELALIKVKA--TPENRSEILQLAEIFRARIVDVSPDSIII 40 (75)
T ss_dssp EEEEEEEEE---SCHHHHHHHHHHHHTT-EEEEEETTEEEE
T ss_pred eEEEEEEEEC--CccCHHHHHHHHHHhCCEEEEECCCEEEE
Confidence 3444444433 12445556778889999999999998776
No 19
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.38 E-value=83 Score=26.77 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=28.6
Q ss_pred CeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEe----CCEEE
Q 041912 301 EVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK----DEQII 339 (359)
Q Consensus 301 ELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~i----g~~IV 339 (359)
|=+||.+.|++ .|+.++-..|++ +||.+-|++ |..||
T Consensus 49 ~~~~itIeG~~-ldydei~~~iE~-~Gg~IHSiDevvaGk~iv 89 (97)
T COG1888 49 ENLKITIEGTN-LDYDEIEEVIEE-LGGAIHSIDEVVAGKRIV 89 (97)
T ss_pred cceEEEEEcCC-CCHHHHHHHHHH-cCCeeeehhhhhhcceee
Confidence 45778888865 789999888877 899999986 45554
No 20
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=28.02 E-value=2.1e+02 Score=25.01 Aligned_cols=47 Identities=9% Similarity=0.055 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhCCe-------EEEEecCCCCccHHHHHHHHHhhCC-CeEEEEeC
Q 041912 289 VVAKVREAFKTEEV-------VRLDCSHVGTNDCKKIGVKLRDLVP-CVPILFKD 335 (359)
Q Consensus 289 lv~~I~~a~e~rEL-------VKI~vl~n~~~d~keiA~~L~~~tg-~~lVq~ig 335 (359)
.++++.++|+.... .+|-+++....+..++.++..+..+ ++|+.+-+
T Consensus 3 ~m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~ 57 (141)
T smart00492 3 YMESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATAR 57 (141)
T ss_pred HHHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccc
Confidence 46778888888765 4566666665566777777776654 78877644
No 21
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=27.05 E-value=1.3e+02 Score=23.46 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=27.4
Q ss_pred CC-CCCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHH
Q 041912 135 LG-DPLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWK 180 (359)
Q Consensus 135 lg-~~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe 180 (359)
-| +++|..|..||+.+|+. --..| -.+||.+-+...-+.|+
T Consensus 11 tGDePmT~aQ~syL~tL~e~--Age~~---~~~LtkaeAs~rId~L~ 52 (57)
T PF11272_consen 11 TGDEPMTGAQASYLKTLSEE--AGEPF---PDDLTKAEASERIDELQ 52 (57)
T ss_pred CCCCCCcHHHHHHHHHHHHH--hCCCC---CCcccHHHHHHHHHHHH
Confidence 35 68999999999999986 22222 34677666555555444
No 22
>PF06335 DUF1054: Protein of unknown function (DUF1054); InterPro: IPR009403 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2A8E_A 3MQZ_A.
Probab=26.25 E-value=60 Score=30.77 Aligned_cols=41 Identities=12% Similarity=0.217 Sum_probs=31.6
Q ss_pred hccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHh
Q 041912 269 NRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRD 324 (359)
Q Consensus 269 ~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~ 324 (359)
+.|-+|-|||||| .|+.+-.|-..|...+. +..++|..+.+
T Consensus 74 KRGYK~~PHFqiG--------------l~~d~lFi~~avi~E~~-~k~~~a~~l~~ 114 (194)
T PF06335_consen 74 KRGYKMLPHFQIG--------------LWDDHLFIWFAVIYEAP-NKAQIAQRLLK 114 (194)
T ss_dssp SS-STTS-EEEEE--------------EETTEEEEEEEE-TT-C-CHHHHHHHHHH
T ss_pred CCccccCCceEEe--------------ecCceEEEEEEEeccCc-cHHHHHHHHHH
Confidence 4688999999999 89999999999988776 77777777765
No 23
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=26.17 E-value=2.7e+02 Score=21.06 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=44.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHH-----HHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEE
Q 041912 159 QINLGKWGVTHNMLDDLHNHW-----KRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIY 214 (359)
Q Consensus 159 ~v~IGK~GlTe~vl~~I~~aw-----e~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVq 214 (359)
.+.|+++.=....++.+..+| ..++-|.++-.|......=.+|+.+.++.+..+.|
T Consensus 2 ~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~q 62 (70)
T PF01918_consen 2 EIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQ 62 (70)
T ss_dssp EEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEE
T ss_pred EEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEE
Confidence 477888888899999999999 88999999999987777779999999988544443
No 24
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=24.87 E-value=64 Score=27.18 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCeEEEEEccEEEE
Q 041912 198 DNVCFHLEEKSGGKIIYRNINILLL 222 (359)
Q Consensus 198 k~~ae~Le~~TGg~vVqriG~~iVL 222 (359)
+.=-.+|.+.+||.|+.+.|++++|
T Consensus 20 ~~RL~qLsdNCGGkVl~v~~~tAil 44 (90)
T PF11608_consen 20 KNRLRQLSDNCGGKVLSVSGGTAIL 44 (90)
T ss_dssp HHHHHHHHHTTT--EEE--TT-EEE
T ss_pred HHHHHHHhhccCCEEEEEeCCEEEE
Confidence 3445678889999999999998876
No 25
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=23.75 E-value=3.2e+02 Score=27.19 Aligned_cols=79 Identities=16% Similarity=0.054 Sum_probs=47.7
Q ss_pred CCCCCCHHHHHHHHHhhccCCCCceEEeCCCCCCH--------HHHHHHHHHHHHcc--eEEEEecCCChhhHHHHHHHH
Q 041912 135 LGDPLTEEEIAELVERYRHSDCARQINLGKWGVTH--------NMLDDLHNHWKRAE--AVRIKCLGVPTLDMDNVCFHL 204 (359)
Q Consensus 135 lg~~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe--------~vl~~I~~awe~hE--LVKIK~~g~~~~d~k~~ae~L 204 (359)
+|..|+++-+..|++.+.. -.-+.-|=.+||+. .++.++...++.+. +..+-|-... +=.+.++|
T Consensus 90 LGR~L~~~s~~~L~~~~~~--~~Dv~iViaDGLSa~Av~~na~~~l~al~~~L~~~g~~iap~v~~~qg---RValgD~I 164 (260)
T PRK05465 90 LGRRLSDESREALKAQCGK--NPDVQIVVADGLSALAVEANAEPLLPALLAGLKAAGWSVGPPVFVRQG---RVALGDEI 164 (260)
T ss_pred CCCCCCHHHHHHHHHhcCC--CCcEEEEEcCCCCHHHHHHhHHHHHHHHHHHHHHcCCCcCCeEEEecC---eehHHHHH
Confidence 4889999999999987332 22344455689985 35556666665542 2222222111 22466677
Q ss_pred HHHhCCeEEE-EEcc
Q 041912 205 EEKSGGKIIY-RNIN 218 (359)
Q Consensus 205 e~~TGg~vVq-riG~ 218 (359)
.+.+|+.+|- .||.
T Consensus 165 ge~L~ar~vvvLIGE 179 (260)
T PRK05465 165 GELLGAKVVVVLIGE 179 (260)
T ss_pred HHHhCCCEEEEEEec
Confidence 7777887654 4775
No 26
>cd08619 PI-PLCXDc_plant Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants. The CD corresponds to the catalytic domain present in uncharacterized plant phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, plant PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of plant PI-PLCXDs still remains u
Probab=23.70 E-value=2.3e+02 Score=28.45 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHhhC--CeEEEEecCCC-CccHHHHHHHHHhhCCCeEEEEe-------------CCEEEEEcCCCCC
Q 041912 285 VYVNVVAKVREAFKTE--EVVRLDCSHVG-TNDCKKIGVKLRDLVPCVPILFK-------------DEQIILWRGKEQA 347 (359)
Q Consensus 285 v~~~lv~~I~~a~e~r--ELVKI~vl~n~-~~d~keiA~~L~~~tg~~lVq~i-------------g~~IVLYRgk~y~ 347 (359)
.++++++.|.+-+..+ |+|-+.++.-. .++..+....|.+..|..++... .+.||+|+...|.
T Consensus 92 ~~~dvL~~i~~FL~~hp~EvVIL~~k~ey~~~~~~~~~~~li~~lGd~l~~~~~~~~~~TL~eL~~krVIviy~~~~~~ 170 (285)
T cd08619 92 PVDVVLNDIKRFLSETKSEFVILEIRTEYGHEDPPQFDLWLVEQLGDHLIHQDDSVFSKTLAELLPKRVICIWKPRKSP 170 (285)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEeecccCCCchHHHHHHHHHhcchhccCCCccccccHHHHhCCcEEEEEcCCCCC
Confidence 4678999999888665 99999995543 44444666777777788777552 2568999887665
No 27
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=23.52 E-value=69 Score=28.79 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHH------HHhhCCeEEEEe-cCCCCccHHHHHHHHHhh
Q 041912 256 ADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVRE------AFKTEEVVRLDC-SHVGTNDCKKIGVKLRDL 325 (359)
Q Consensus 256 ~e~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~------a~e~rELVKI~v-l~n~~~d~keiA~~L~~~ 325 (359)
-.+|+.+|...||+.-+.- .|.+|||-+..--+....+ .-+-.+.+|-.+ +=-+.+|+.+++..|++.
T Consensus 25 ~~gl~~~ql~~iR~~lr~~--~~~v~KNtl~~~Al~~~~~~~~~~~~~~L~~~l~G~~~lift~~dp~~v~k~l~~~ 99 (163)
T cd05796 25 VDNMRNNKLKDIRQEWKDS--RFFFGKNKVMQVALGRTPEDEYKPNLHKLSKYLKGQVGLLFTNEPPEEVIEYFDSY 99 (163)
T ss_pred ecCCCHHHHHHHHHHhcCC--EEEEEchHHHHHHHhhCccccccccHHHHHHHhCCCEEEEEECCCHHHHHHHHHHc
Confidence 3789999999999988764 8889999886655443221 111122344333 333457889999998873
No 28
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=22.09 E-value=71 Score=28.56 Aligned_cols=27 Identities=26% Similarity=0.639 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHcceEEEEecCCC
Q 041912 167 VTHNMLDDLHNHWKRAEAVRIKCLGVP 193 (359)
Q Consensus 167 lTe~vl~~I~~awe~hELVKIK~~g~~ 193 (359)
++++.+..||++|.--+-|+|||.+.+
T Consensus 38 Ia~~fVkdI~d~L~vG~eV~vKVl~id 64 (129)
T COG1098 38 IADGFVKDIHDHLKVGQEVKVKVLDID 64 (129)
T ss_pred hhhhhHHhHHHHhcCCCEEEEEEEeec
Confidence 689999999999999999999999764
No 29
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=21.08 E-value=2.2e+02 Score=24.93 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEE
Q 041912 163 GKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYR 215 (359)
Q Consensus 163 GK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqr 215 (359)
-..-+|++++++|.++++...=+.|.+.|. +|+--+...|..-.|+.|++=
T Consensus 42 PpG~It~el~~ai~~a~~~~~~~~I~V~GE--EDL~~lPail~aP~gs~V~YG 92 (121)
T PF04019_consen 42 PPGTITEELIEAIKKALESGKPVVIFVDGE--EDLAVLPAILYAPEGSVVLYG 92 (121)
T ss_pred CCCcccHHHHHHHHHHHhCCCCEEEEEeCh--HHHHHHHHHHhCCCCCEEEEC
Confidence 456799999999999999999999999986 577777777777777777764
No 30
>cd08619 PI-PLCXDc_plant Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants. The CD corresponds to the catalytic domain present in uncharacterized plant phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, plant PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although the biological function of plant PI-PLCXDs still remains u
Probab=20.70 E-value=2.4e+02 Score=28.24 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHc--ceEEEEecCCCh-hhHHHHHHHHHHHhCCeEEEEE-------------ccEEEEEeCCCCC
Q 041912 167 VTHNMLDDLHNHWKRA--EAVRIKCLGVPT-LDMDNVCFHLEEKSGGKIIYRN-------------INILLLYRGRNYD 229 (359)
Q Consensus 167 lTe~vl~~I~~awe~h--ELVKIK~~g~~~-~d~k~~ae~Le~~TGg~vVqri-------------G~~iVLYRgkny~ 229 (359)
-.+.++++|.+-++.| |+|=+.++.... .+..+..+.|.+..|..++.+. .++||+|+...|.
T Consensus 92 ~~~dvL~~i~~FL~~hp~EvVIL~~k~ey~~~~~~~~~~~li~~lGd~l~~~~~~~~~~TL~eL~~krVIviy~~~~~~ 170 (285)
T cd08619 92 PVDVVLNDIKRFLSETKSEFVILEIRTEYGHEDPPQFDLWLVEQLGDHLIHQDDSVFSKTLAELLPKRVICIWKPRKSP 170 (285)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEEEeecccCCCchHHHHHHHHHhcchhccCCCccccccHHHHhCCcEEEEEcCCCCC
Confidence 3478999999999886 999999974322 2222566777888898887663 3468999888775
Done!