Query 041912
Match_columns 359
No_of_seqs 272 out of 798
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 20:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jo0_A Hypothetical protein HI 100.0 1.9E-29 6.6E-34 208.4 12.9 89 138-228 2-90 (98)
2 1rq8_A Conserved hypothetical 100.0 5E-29 1.7E-33 207.9 13.1 90 138-229 1-90 (104)
3 1jo0_A Hypothetical protein HI 99.9 1.3E-27 4.5E-32 197.4 10.7 89 258-346 2-90 (98)
4 1rq8_A Conserved hypothetical 99.9 2.1E-27 7.2E-32 198.2 10.9 88 258-345 1-88 (104)
5 3ka5_A Ribosome-associated pro 77.8 8.1 0.00028 29.4 7.0 47 183-229 1-50 (65)
6 3k2t_A LMO2511 protein; lister 65.8 8.1 0.00028 28.5 4.4 47 183-229 1-50 (57)
7 3lyv_A Ribosome-associated fac 61.7 9.7 0.00033 29.0 4.3 47 183-229 2-51 (66)
8 3sbx_A Putative uncharacterize 60.2 14 0.00048 33.0 5.8 58 260-323 121-188 (189)
9 1ydh_A AT5G11950; structural g 48.7 31 0.001 31.3 6.2 53 267-325 128-187 (216)
10 3qua_A Putative uncharacterize 47.9 23 0.00078 31.9 5.1 57 266-323 139-197 (199)
11 2a33_A Hypothetical protein; s 47.4 36 0.0012 30.8 6.4 60 260-325 122-191 (215)
12 3ka5_A Ribosome-associated pro 42.9 92 0.0031 23.5 7.0 47 301-347 1-50 (65)
13 1t35_A Hypothetical protein YV 40.9 31 0.001 30.5 4.8 54 267-326 120-180 (191)
14 3l8m_A Probable thiamine pyrop 37.5 2.2E+02 0.0075 25.3 10.3 91 247-342 40-137 (212)
15 3bpd_A Uncharacterized protein 30.2 23 0.00078 29.2 1.9 41 301-343 49-93 (100)
16 3p04_A Uncharacterized BCR; SE 29.2 1.4E+02 0.0048 23.6 6.3 59 285-345 14-75 (87)
17 3mhp_C TIC62_peptide, ferredox 29.0 37 0.0013 21.6 2.3 17 31-47 6-25 (26)
18 3k2t_A LMO2511 protein; lister 28.1 99 0.0034 22.6 4.9 46 302-347 2-50 (57)
19 3ihk_A Thiamin pyrophosphokina 27.8 3.3E+02 0.011 24.3 10.2 92 246-340 36-134 (218)
20 2e6x_A TT1592, hypothetical pr 27.6 28 0.00094 26.7 1.8 17 202-218 3-19 (69)
21 4ici_A Putative flavoprotein; 26.2 2.4E+02 0.0082 23.7 7.9 64 258-324 101-167 (171)
22 3lyv_A Ribosome-associated fac 23.7 1.1E+02 0.0038 23.1 4.6 45 302-347 3-51 (66)
23 2raq_A Conserved protein MTH88 22.1 80 0.0027 25.8 3.7 38 300-339 48-89 (97)
24 3p04_A Uncharacterized BCR; SE 20.5 3.1E+02 0.011 21.5 7.8 57 172-229 18-77 (87)
No 1
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.96 E-value=1.9e-29 Score=208.35 Aligned_cols=89 Identities=19% Similarity=0.242 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEc
Q 041912 138 PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217 (359)
Q Consensus 138 ~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG 217 (359)
.||++|+++||++||+ |+|+|+|||+|||++|+++|+++|++||||||+|++++.+|++++|++|+++|||++||+||
T Consensus 2 ~Lt~kqr~~Lr~~ah~--l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG 79 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHH--LNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIG 79 (98)
T ss_dssp CCCHHHHHHHHHHHTT--BCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEET
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 6999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCC
Q 041912 218 NILLLYRGRNY 228 (359)
Q Consensus 218 ~~iVLYRgkny 228 (359)
+++||||++..
T Consensus 80 ~~~vLyR~~~~ 90 (98)
T 1jo0_A 80 HILVLYRPSEE 90 (98)
T ss_dssp TEEEEECCCSS
T ss_pred CEEEEEccCCC
Confidence 99999999843
No 2
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.96 E-value=5e-29 Score=207.95 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHhhccCCCCceEEeCCCCCCHHHHHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEEc
Q 041912 138 PLTEEEIAELVERYRHSDCARQINLGKWGVTHNMLDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRNI 217 (359)
Q Consensus 138 ~LT~kErk~LR~lAh~~kLkp~v~IGK~GlTe~vl~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqriG 217 (359)
+||++|+++||++||+ |+|+|+|||+|||++|+++|+++|++||||||+|++++.+|++++|++|+++|||++||+||
T Consensus 1 mLt~kqr~~LR~~ah~--Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG 78 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHN--IDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIG 78 (104)
T ss_dssp CCCHHHHHHHHHHTTS--SCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEET
T ss_pred CCCHHHHHHHHHHhcC--CCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 5999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeCCCCC
Q 041912 218 NILLLYRGRNYD 229 (359)
Q Consensus 218 ~~iVLYRgkny~ 229 (359)
+++||||++..+
T Consensus 79 ~~~VLYR~~~~~ 90 (104)
T 1rq8_A 79 SMIVIYRESKEN 90 (104)
T ss_dssp TEEEEEECCCSC
T ss_pred CEEEEEeCCCCC
Confidence 999999998744
No 3
>1jo0_A Hypothetical protein HI1333; structural genomics, YHBY_HAEI structure 2 function project, S2F, unknown function; 1.37A {Haemophilus influenzae} SCOP: d.68.4.1 PDB: 1ln4_A
Probab=99.95 E-value=1.3e-27 Score=197.39 Aligned_cols=89 Identities=16% Similarity=0.265 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEeCCE
Q 041912 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQ 337 (359)
Q Consensus 258 ~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~ig~~ 337 (359)
.||++||+|||++||+|+|+|+|||+|++++++++|++||++||||||.|++++.+|.+++|++|++.|||++||+||++
T Consensus 2 ~Lt~kqr~~Lr~~ah~l~pvv~IGk~GlT~~vi~ei~~aL~~~ELIKVkvl~~~~~~~~e~a~~la~~t~a~~Vq~IG~~ 81 (98)
T 1jo0_A 2 TLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHI 81 (98)
T ss_dssp CCCHHHHHHHHHHHTTBCCSEEECTTCSCHHHHHHHHHHHHHHSEEEEEETTCCHHHHHHHHHHHHHHHCCEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCeEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC
Q 041912 338 IILWRGKEQ 346 (359)
Q Consensus 338 IVLYRgk~y 346 (359)
+||||+++-
T Consensus 82 ~vLyR~~~~ 90 (98)
T 1jo0_A 82 LVLYRPSEE 90 (98)
T ss_dssp EEEECCCSS
T ss_pred EEEEccCCC
Confidence 999999843
No 4
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=99.94 E-value=2.1e-27 Score=198.17 Aligned_cols=88 Identities=14% Similarity=0.326 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEeCCE
Q 041912 258 GLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFKDEQ 337 (359)
Q Consensus 258 ~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~ig~~ 337 (359)
.||++||+|||++|++|+|+|+|||+|++++++++|++||++||||||.|+++|..|.+++|++|++.|||++||+||++
T Consensus 1 mLt~kqr~~LR~~ah~Lkpvv~IGK~GlTe~vi~ei~~aL~~hELIKVkvl~~~~~d~~e~a~~la~~t~a~vVq~IG~~ 80 (104)
T 1rq8_A 1 MLTGKQKRYLRSLAHNIDPIFQIGKGGINENMIKQIDDTLENRELIKVHVLQNNFDDKKELAETLSEATRSELVQVIGSM 80 (104)
T ss_dssp CCCHHHHHHHHHHTTSSCCSCEECSSSCCHHHHHHHHHHHHHSSEEEEEECCCCHHHHHHHHHHHHHHHTEEEEEEETTE
T ss_pred CCCHHHHHHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHHHHHHhCCEEEEEECCE
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 041912 338 IILWRGKE 345 (359)
Q Consensus 338 IVLYRgk~ 345 (359)
+||||+++
T Consensus 81 ~VLYR~~~ 88 (104)
T 1rq8_A 81 IVIYRESK 88 (104)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999986
No 5
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=77.79 E-value=8.1 Score=29.41 Aligned_cols=47 Identities=13% Similarity=0.344 Sum_probs=40.6
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---ccEEEEEeCCCCC
Q 041912 183 EAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRN---INILLLYRGRNYD 229 (359)
Q Consensus 183 ELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqri---G~~iVLYRgkny~ 229 (359)
++|+.|--.....+.++++.+++-.-.--+|-++ |.+-|+||.++.+
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 5788888888889999999999988777788887 6799999998876
No 6
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=65.84 E-value=8.1 Score=28.55 Aligned_cols=47 Identities=15% Similarity=0.296 Sum_probs=35.8
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---ccEEEEEeCCCCC
Q 041912 183 EAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRN---INILLLYRGRNYD 229 (359)
Q Consensus 183 ELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqri---G~~iVLYRgkny~ 229 (359)
++|+.|-......+.++++.+++..-.--+|-++ |.+-|+||.++.+
T Consensus 1 ~ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 1 EIVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSC
T ss_pred CeEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 3566666666778899999999988777788886 7799999998865
No 7
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=61.69 E-value=9.7 Score=29.02 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=38.5
Q ss_pred ceEEEEecCCChhhHHHHHHHHHHHhCCeEEEEE---ccEEEEEeCCCCC
Q 041912 183 EAVRIKCLGVPTLDMDNVCFHLEEKSGGKIIYRN---INILLLYRGRNYD 229 (359)
Q Consensus 183 ELVKIK~~g~~~~d~k~~ae~Le~~TGg~vVqri---G~~iVLYRgkny~ 229 (359)
++|+.|--.....+.++++.+++-.-.--+|-++ |.+-|+||.++.+
T Consensus 2 ~iVr~K~~~~kpMsveEAv~qMel~gh~F~vF~n~etg~~nVVYRR~dG~ 51 (66)
T 3lyv_A 2 QVVRTKNVTLKPMDVEEARLQMELLGHDFFIYTDSEDGATNILYRREDGN 51 (66)
T ss_dssp CCCCCCCCCCCEECHHHHHHHHHTTTCSEEEEEETTTCSEEEEEECTTSS
T ss_pred eEEEEEEccCCCCCHHHHHHHHHcCCCcEEEEEeCCCCCEEEEEEECCCC
Confidence 4667776677788999999999887777788886 7799999998876
No 8
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=60.23 E-value=14 Score=33.03 Aligned_cols=58 Identities=17% Similarity=0.127 Sum_probs=40.2
Q ss_pred CHHHHH---HHHhccCCCCCceecccCCccHHHHHHHHHHHhh-------CCeEEEEecCCCCccHHHHHHHHH
Q 041912 260 TFEETK---EMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKT-------EEVVRLDCSHVGTNDCKKIGVKLR 323 (359)
Q Consensus 260 T~kEr~---~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~-------rELVKI~vl~n~~~d~keiA~~L~ 323 (359)
|-+|-. -+.+++.+-+|++.++.+|.|+.+++.++.+.+. .+++.+. +|++++.+.|+
T Consensus 121 TLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~------d~~ee~~~~l~ 188 (189)
T 3sbx_A 121 TLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVV------DNLDDALQACA 188 (189)
T ss_dssp HHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEE------SSHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEe------CCHHHHHHHhc
Confidence 344444 3567787889999999999999999998744433 2344443 66777766653
No 9
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=48.72 E-value=31 Score=31.33 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHhccCCCCCceecccCCccHHHHHHHHHHHhh-------CCeEEEEecCCCCccHHHHHHHHHhh
Q 041912 267 MRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKT-------EEVVRLDCSHVGTNDCKKIGVKLRDL 325 (359)
Q Consensus 267 LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~-------rELVKI~vl~n~~~d~keiA~~L~~~ 325 (359)
+.+++.+-+|++.+|.+|.|+.+++.++...+. ..++.+. +|++++.+.|++.
T Consensus 128 ~~qlg~~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~------d~~ee~~~~l~~~ 187 (216)
T 1ydh_A 128 WSQLGIHKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSA------PTAKELMEKMEEY 187 (216)
T ss_dssp HHHHTSCCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEE------SSHHHHHHHHHHC
T ss_pred HHHhcccCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEe------CCHHHHHHHHHHh
Confidence 566778889999999999999999998655432 2333333 7889999999874
No 10
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=47.92 E-value=23 Score=31.90 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecC--CCCccHHHHHHHHH
Q 041912 266 EMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSH--VGTNDCKKIGVKLR 323 (359)
Q Consensus 266 ~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~--n~~~d~keiA~~L~ 323 (359)
-+.+++.+-+|++.++.+|.|+.+++.++. +.....|+-.-.. ...+|++++.+.|+
T Consensus 139 t~~qlg~~~kPvvlln~~gfw~~l~~~l~~-~~~~Gfi~~~~~~~i~~~d~~~e~~~~l~ 197 (199)
T 3qua_A 139 TAGYLGMHDKPLILLDPFGHYDGLLTWLRG-LVPTGYVSQRAMDSLVVVDNVEAALEACA 197 (199)
T ss_dssp HHHHTTSCCCCEEEECTTSTTHHHHHHHHH-TTTTTSSCHHHHHTSEEESSHHHHHHHHS
T ss_pred HHHHhccCCCCEEEEcCCccchHHHHHHHH-HHHCCCCCHHHCCeEEEeCCHHHHHHHHh
Confidence 366778788999999999999999999974 4444333321111 11377888877775
No 11
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=47.43 E-value=36 Score=30.79 Aligned_cols=60 Identities=25% Similarity=0.402 Sum_probs=44.2
Q ss_pred CHHHHHH---HHhccCCCCCceecccCCccHHHHHHHHHHHh-------hCCeEEEEecCCCCccHHHHHHHHHhh
Q 041912 260 TFEETKE---MRNRGLHSPPLMKLTRNGVYVNVVAKVREAFK-------TEEVVRLDCSHVGTNDCKKIGVKLRDL 325 (359)
Q Consensus 260 T~kEr~~---LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e-------~rELVKI~vl~n~~~d~keiA~~L~~~ 325 (359)
|-+|-.+ +.+++.+-+|++.++.+|.|+.+++.++...+ ...++.+. +|++++.+.|++.
T Consensus 122 TLdElfE~lt~~qlg~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~------d~~ee~~~~l~~~ 191 (215)
T 2a33_A 122 TLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSA------PTAKELVKKLEEY 191 (215)
T ss_dssp HHHHHHHHHHHHHTTSCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEE------SSHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhCCCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEe------CCHHHHHHHHHHh
Confidence 4455553 67788889999999999999999998865543 23344333 7889999998764
No 12
>3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum}
Probab=42.86 E-value=92 Score=23.52 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=34.9
Q ss_pred CeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEe---CCEEEEEcCCCCC
Q 041912 301 EVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK---DEQIILWRGKEQA 347 (359)
Q Consensus 301 ELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~i---g~~IVLYRgk~y~ 347 (359)
++|+.+--.....+++++..+++-.-.--+|-.+ |..-|+||.++..
T Consensus 1 ~iVr~K~~~~kpMsveEAv~qmel~gh~F~vF~n~etg~~nVVYRR~dG~ 50 (65)
T 3ka5_A 1 EIVKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDGN 50 (65)
T ss_dssp CEEEEECSCCSCBCHHHHHHHHHHHTCSEEEEEETTTTEEEEEEECTTSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHhCCCcEEEEEeCCCCCEEEEEEeCCCC
Confidence 4677777777889999999999875444444444 4777999998753
No 13
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=40.94 E-value=31 Score=30.52 Aligned_cols=54 Identities=11% Similarity=0.247 Sum_probs=38.7
Q ss_pred HHhccCCCCCceecccCCccHHHHHHHHHHHhh-------CCeEEEEecCCCCccHHHHHHHHHhhC
Q 041912 267 MRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKT-------EEVVRLDCSHVGTNDCKKIGVKLRDLV 326 (359)
Q Consensus 267 LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~-------rELVKI~vl~n~~~d~keiA~~L~~~t 326 (359)
+.+++.+-+|++.+|.+|.|+.+++.++...+. .+++.+. +|++++.+.|++..
T Consensus 120 ~~q~g~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~------~~~~e~~~~l~~~~ 180 (191)
T 1t35_A 120 WAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSS------SRPDELIEQMQNYS 180 (191)
T ss_dssp TTSCSSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEE------SSHHHHHHHHHTC-
T ss_pred HHHhCCCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEe------CCHHHHHHHHHHhc
Confidence 345666669999999999999999988644432 1233333 78899999888743
No 14
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=37.47 E-value=2.2e+02 Score=25.27 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=63.3
Q ss_pred CCcccccccCCCCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhhC
Q 041912 247 IYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDLV 326 (359)
Q Consensus 247 v~~~l~~~~~e~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~t 326 (359)
+-||++-++-++++.+++.++++.+ +++..=..-=+-++-.++..|++ +..-.|.+.|....-.+.+-..|.-+.
T Consensus 40 ~~Pd~ivGD~DSi~~~~~~~~~~~~----~i~~~p~eKD~TD~e~Al~~a~~-~~~~~I~i~Ga~GgR~DH~lani~ll~ 114 (212)
T 3l8m_A 40 ITPQFAVGDFDSISDSERNFIQQQI----EINPYNSEKDDTDLALGIDQAVK-RGYRNIDVYGATGGRLDHFMGALQILE 114 (212)
T ss_dssp CCCSEEESCCCCSCHHHHHHHHHHT----BCCCCC---CBCHHHHHHHHHHH-TTCCEEEEESCSSSCHHHHHHHHHHHT
T ss_pred CCccEEEeCcccCCHHHHHHHhcCC----cEEEECCcCCCCHHHHHHHHHHH-CCCCEEEEEcCCCCchhHHHHHHHHHH
Confidence 5678889999999999999999986 23333223334456677777776 466778888888888888777665543
Q ss_pred -------CCeEEEEeCCEEEEEc
Q 041912 327 -------PCVPILFKDEQIILWR 342 (359)
Q Consensus 327 -------g~~lVq~ig~~IVLYR 342 (359)
+..++-+.++.+|.+-
T Consensus 115 ~~~~~~~~~~i~lid~~~~i~~l 137 (212)
T 3l8m_A 115 KPEYAKMNINIKLIDDTNEIQFI 137 (212)
T ss_dssp CHHHHTTTCEEEEECSSEEEEEE
T ss_pred hhhhhccCceEEEEeCCeEEEEE
Confidence 5567777776666553
No 15
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=30.25 E-value=23 Score=29.16 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=32.9
Q ss_pred CeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEe----CCEEEEEcC
Q 041912 301 EVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK----DEQIILWRG 343 (359)
Q Consensus 301 ELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~i----g~~IVLYRg 343 (359)
|=+||.+.|+. .|.+++.+.|++ .||.+-|++ |.+||=||.
T Consensus 49 e~lkItIEG~d-Idfd~I~~~IE~-~GgvIHSIDEVvaG~~iv~~~~ 93 (100)
T 3bpd_A 49 ENIKITILGNN-LDYEQIKGVIED-MGGVIHSVDEVVAGKIIVESVE 93 (100)
T ss_dssp EEEEEEEEEEE-ECHHHHHHHHHT-TTCEEEEEEEEEEESSCCCCCC
T ss_pred cEEEEEEEecC-CCHHHHHHHHHH-cCCeEEeeeeeeecceeeeeec
Confidence 45777777754 789999988887 899999988 788887774
No 16
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=29.18 E-value=1.4e+02 Score=23.59 Aligned_cols=59 Identities=10% Similarity=0.066 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHh---hCCCeEEEEeCCEEEEEcCCC
Q 041912 285 VYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRD---LVPCVPILFKDEQIILWRGKE 345 (359)
Q Consensus 285 v~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~---~tg~~lVq~ig~~IVLYRgk~ 345 (359)
-|++ +..|-++++....|=|+..+...++.+++.+.++- ..+|.+..+..+.+ |+=+++
T Consensus 14 sy~D-a~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~kI~~~IF-l~~P~~ 75 (87)
T 3p04_A 14 SFED-AQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQKIDSVTF-AVVPEL 75 (87)
T ss_dssp SGGG-HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEEEETTEE-EEECCC
T ss_pred cHHH-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEEEcCCEE-EEECCC
Confidence 3443 45788999999999999999999999999999886 55888776655544 444433
No 17
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=29.02 E-value=37 Score=21.55 Aligned_cols=17 Identities=47% Similarity=0.640 Sum_probs=12.7
Q ss_pred CCCCC---CCCCCCCCCCCC
Q 041912 31 SSEYI---DDDPPFSPKRQK 47 (359)
Q Consensus 31 ~~~~~---~~~~~~~~~~~~ 47 (359)
.|++. +++||-|+++..
T Consensus 6 lSpy~~Y~dlKPPsSPsPs~ 25 (26)
T 3mhp_C 6 LSPYTAYDDLKPPSSPSPTK 25 (26)
T ss_dssp SSTTTTBTTSSCSSCSSCCC
T ss_pred cCccccccccCCCCCCCCCC
Confidence 35655 899999988843
No 18
>3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes}
Probab=28.12 E-value=99 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=29.8
Q ss_pred eEEEEecCCCCccHHHHHHHHHhhCCCeEEEEe---CCEEEEEcCCCCC
Q 041912 302 VVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK---DEQIILWRGKEQA 347 (359)
Q Consensus 302 LVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~i---g~~IVLYRgk~y~ 347 (359)
+|+.+-......+++++..+|+-.-.--+|-.+ |+.-|+||.++..
T Consensus 2 ivr~K~~~~kpmsveEAv~qmel~gh~F~vF~n~~t~~~nVvYrR~dG~ 50 (57)
T 3k2t_A 2 IVRTKQFSLKPMDSEEAVLQMNLLGHSFYVYTDAETNGTNIVYSRKDGK 50 (57)
T ss_dssp CCCCCC---CCBCHHHHHHHHHHHTCSEEEEEBSSSCCEEEEEECTTSC
T ss_pred eEEEEeccCCCCCHHHHHHHHHhCCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 344444455678889999998876444444444 5788999998754
No 19
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=27.79 E-value=3.3e+02 Score=24.28 Aligned_cols=92 Identities=9% Similarity=-0.013 Sum_probs=66.2
Q ss_pred CCCcccccccCCCCCHHHHHHHHhccCCCCCceecccCCccHHHHHHHHHHHhhCCeEEEEecCCCCccHHHHHHHHHhh
Q 041912 246 PIYPKVVKNVADGLTFEETKEMRNRGLHSPPLMKLTRNGVYVNVVAKVREAFKTEEVVRLDCSHVGTNDCKKIGVKLRDL 325 (359)
Q Consensus 246 Pv~~~l~~~~~e~LT~kEr~~LR~la~~l~pi~~LGKnGv~~~lv~~I~~a~e~rELVKI~vl~n~~~d~keiA~~L~~~ 325 (359)
-+-||++-++-++++.+++.++++.+- .++..=..-=+-++-.++..|++....-.|.+.|....-.+.+-..|.-+
T Consensus 36 g~~Pd~ivGDfDSi~~~~~~~~~~~~~---~i~~~~~eKD~TD~e~Al~~a~~~~~~~~I~i~Ga~GGR~DH~lani~lL 112 (218)
T 3ihk_A 36 QLPLDLAIGDFDSVSAEEFKQIKAKAK---KLVMAPAEKNDTDTELALKTIFDCFGRVEIIVFGAFGGRIDHMLSNIFLP 112 (218)
T ss_dssp TCCCSEEEECCTTSCHHHHHHHHTTCS---SEEECCSSCSSCHHHHHHHHHHHHTSSCEEEEESCSSSCHHHHHHHHTGG
T ss_pred CCCCCEEEeCcccCCHHHHHHHHhcCC---eEEECCCCCCCCHHHHHHHHHHHhCCCCEEEEECCCCCchhhHHHHHHHH
Confidence 367889999999999999999998763 34443344455667788888888644557778888888888887777654
Q ss_pred C-------CCeEEEEeCCEEEE
Q 041912 326 V-------PCVPILFKDEQIIL 340 (359)
Q Consensus 326 t-------g~~lVq~ig~~IVL 340 (359)
. +..++-+.++..|.
T Consensus 113 ~~~~~~~~~~~i~lid~~n~i~ 134 (218)
T 3ihk_A 113 SDPDLAPFMRCFKLRDEQNLVE 134 (218)
T ss_dssp GSTTTGGGTTSEEEEETTEEEE
T ss_pred HhhhhhccCceEEEEcCCcEEE
Confidence 3 34566667665553
No 20
>2e6x_A TT1592, hypothetical protein TTHA1281; unknown function protein, NPPSFA, national project on protei structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=27.58 E-value=28 Score=26.72 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHHHHhCCeEEEEEcc
Q 041912 202 FHLEEKSGGKIIYRNIN 218 (359)
Q Consensus 202 e~Le~~TGg~vVqriG~ 218 (359)
+++-++.|+.+|||||.
T Consensus 3 ~d~L~~LG~~LvWRiGk 19 (69)
T 2e6x_A 3 KDLLDKLGQHLVWRMGR 19 (69)
T ss_dssp HHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHhceeEEeecc
Confidence 45677899999999997
No 21
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=26.24 E-value=2.4e+02 Score=23.66 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHhccCCCCCceecccCC--ccHHHHHHHHHHHhhCCeEE-EEecCCCCccHHHHHHHHHh
Q 041912 258 GLTFEETKEMRNRGLHSPPLMKLTRNG--VYVNVVAKVREAFKTEEVVR-LDCSHVGTNDCKKIGVKLRD 324 (359)
Q Consensus 258 ~LT~kEr~~LR~la~~l~pi~~LGKnG--v~~~lv~~I~~a~e~rELVK-I~vl~n~~~d~keiA~~L~~ 324 (359)
.+...=+.+|.++..+=++++.++-.| -+.+.++.|.+.++...+.. +.|.+ ...++|..=|++
T Consensus 101 ~~~~~~~~fl~~~~l~gk~v~~f~t~g~~~~g~a~~~l~~~l~~~~~~~g~~~~~---~~~~~i~~Wl~~ 167 (171)
T 4ici_A 101 LAPRIINTFIEGHSLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWKEGRLLNR---TDEKAIRAWLDV 167 (171)
T ss_dssp BCCHHHHHHHHHSCCTTSEEEEEEECSSCCSHHHHHHHHHHSTTSEECCCEECSS---CCHHHHHHHHHH
T ss_pred CchHHHHHHHHHcCCCcCEEEEEEecCCCCcchHHHHHHHHcCCCeeccCeEecC---CCHHHHHHHHHH
Confidence 344455677888766666666666554 35788999999998777644 22333 234555555554
No 22
>3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes}
Probab=23.68 E-value=1.1e+02 Score=23.12 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=31.6
Q ss_pred eEEEEecCCCCccHHHHHHHHHhhCCCeEEEE-e---CCEEEEEcCCCCC
Q 041912 302 VVRLDCSHVGTNDCKKIGVKLRDLVPCVPILF-K---DEQIILWRGKEQA 347 (359)
Q Consensus 302 LVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~-i---g~~IVLYRgk~y~ 347 (359)
+|+.+.......+++++..+++-. |-.+.-+ + |..-|+||.++..
T Consensus 3 iVr~K~~~~kpMsveEAv~qMel~-gh~F~vF~n~etg~~nVVYRR~dG~ 51 (66)
T 3lyv_A 3 VVRTKNVTLKPMDVEEARLQMELL-GHDFFIYTDSEDGATNILYRREDGN 51 (66)
T ss_dssp CCCCCCCCCCEECHHHHHHHHHTT-TCSEEEEEETTTCSEEEEEECTTSS
T ss_pred EEEEEEccCCCCCHHHHHHHHHcC-CCcEEEEEeCCCCCEEEEEEECCCC
Confidence 455555556678889999888764 5555554 4 5788999998753
No 23
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=22.13 E-value=80 Score=25.78 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=29.5
Q ss_pred CCeEEEEecCCCCccHHHHHHHHHhhCCCeEEEEe----CCEEE
Q 041912 300 EEVVRLDCSHVGTNDCKKIGVKLRDLVPCVPILFK----DEQII 339 (359)
Q Consensus 300 rELVKI~vl~n~~~d~keiA~~L~~~tg~~lVq~i----g~~IV 339 (359)
-|=+||.+.|+. .|.+++.+.|++ +||.+-|++ |.+||
T Consensus 48 Te~lkitiEG~~-id~d~I~~~IE~-~Gg~IHSIDEVvaG~~iv 89 (97)
T 2raq_A 48 TENIKVTIQGND-LDFDEITRAIES-YGGSIHSVDEVVAGRTMV 89 (97)
T ss_dssp CEEEEEEEECSS-CCHHHHHHHHHH-TTCEEEEEEEEEEESSCC
T ss_pred ccEEEEEEEecC-CCHHHHHHHHHH-cCCeEEeeeeeeecceec
Confidence 355788877754 889999988887 899999988 55554
No 24
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=20.53 E-value=3.1e+02 Score=21.51 Aligned_cols=57 Identities=7% Similarity=0.014 Sum_probs=46.3
Q ss_pred HHHHHHHHHHcceEEEEecCCChhhHHHHHHHHHH---HhCCeEEEEEccEEEEEeCCCCC
Q 041912 172 LDDLHNHWKRAEAVRIKCLGVPTLDMDNVCFHLEE---KSGGKIIYRNINILLLYRGRNYD 229 (359)
Q Consensus 172 l~~I~~awe~hELVKIK~~g~~~~d~k~~ae~Le~---~TGg~vVqriG~~iVLYRgkny~ 229 (359)
+.+|-++++....|=|.+.+.+..+.+++.+.++- ..+|.+ +++|+.+.|+=+++..
T Consensus 18 a~~I~d~Lr~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i-~kI~~~IFl~~P~~V~ 77 (87)
T 3p04_A 18 AQVIGGAFRDGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKM-QKIDSVTFAVVPELSN 77 (87)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEE-EEEETTEEEEECCCCC
T ss_pred HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHhccceEEeccEE-EEEcCCEEEEECCCeE
Confidence 36899999999999999999999999999999875 456765 5667777777776654
Done!