BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041916
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 160
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 161 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 220
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 221 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 255
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 86
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 103 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 162
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 163 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 222
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 223 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 257
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 83 TVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
+ T KPT P + H VS++ F PNG +A+S + IKIW + +
Sbjct: 24 SATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 83
Query: 139 TLPGH 143
T+ GH
Sbjct: 84 TISGH 88
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 205 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 239
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 70
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 199 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 233
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 75 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 134
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 135 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 194
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 195 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 229
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 60
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 198
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 199 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 233
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 64
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 80 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 139
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 140 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 199
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 200 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 234
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 65
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 96 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 155
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 156 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 215
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 216 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 250
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 81
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 205 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 239
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 81 GGTVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV 136
G + T KPT P + H VS++ F PNG +A+S + IKIW +
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 137 LQTLPGH 143
+T+ GH
Sbjct: 64 EKTISGH 70
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 78 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 137
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 138 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 197
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 198 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 232
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 83 TVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
+ T KPT P + + H VS++ F PNG +A+S + IKIW + +
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 139 TLPGH 143
T+ GH
Sbjct: 63 TISGH 67
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 85 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 144
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 145 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 204
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 205 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 239
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 78 GHSGGTVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
G G + T KPT P + H VS++ F PNG +A+S + IKIW
Sbjct: 1 GAMGSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 134 YEVLQTLPGH 143
+ +T+ GH
Sbjct: 61 GKFEKTISGH 70
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 84 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 143
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 144 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 203
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 204 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 238
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 82 GTVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL 137
G+ T KPT P + H VS++ F PNG +A+S + IKIW +
Sbjct: 4 GSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 63
Query: 138 QTLPGH 143
+T+ GH
Sbjct: 64 KTISGH 69
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A+S + IKIW + +T+ GH
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 142 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 202 KFSPNGKYILAATLDNTLK-LWDYSKGKCLKTYTGH 236
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
H VS++ F PNG +A S + IKIW + +T+ GH
Sbjct: 25 HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
LL S + L+ DV+ G+ + + NP + ++ G +V +W T
Sbjct: 82 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 141
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH----AKTL 147
L + H PVSA+ F+ +G L+ +S + +IWD + L+TL +
Sbjct: 142 GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV 201
Query: 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181
FS G +LA + ++ L D+S Y GH
Sbjct: 202 KFSPNGKYILAATLDNDLK-LWDYSKGKCLKTYTGH 236
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 83 TVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
+ T KPT P + + H VS++ F PNG +A+S + IKIW + +
Sbjct: 3 SATQSKPTPVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 139 TLPGH 143
T+ GH
Sbjct: 63 TISGH 67
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKT---LDFSQKG-LLA 156
H+ PV+ + FHP +M ++ ++ IK+WD + +TL GH + + F G LLA
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLA 166
Query: 157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199
+ L DF G GH + + VS P D
Sbjct: 167 SCSADMTIKLWDFQGFECIRTMHGHD----HNVSSVSIMPNGD 205
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL 137
G T+ MW +T L+ ++ H V + FH G + + + +++WD + +
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 138 QTLPGH---AKTLDFSQKGLLAVGTGSFVQIL 166
+TL H +LDF + V TGS Q +
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPYVV-TGSVDQTV 404
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Query: 54 GNF-RTGLGRTDVMRVNPFN---GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA 109
G+F RT G TD ++ F+ +++ + T+ +W + M H VS+++
Sbjct: 140 GDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS 199
Query: 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
PNG + ++ ++ IK+W+++ ++T GH
Sbjct: 200 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 61/160 (38%), Gaps = 26/160 (16%)
Query: 29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88
+H + AS +K ++ +V G V F ++R N +++ + TV +W
Sbjct: 205 DHIVSASRDK--TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATS---GKECK-----------------IKI 128
T ++ H+ V +++ P + S G E K IK+
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 129 WDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGD 168
WD+ L TL GH D +G+L G F+ D
Sbjct: 323 WDVSTGMCLMTLVGH----DNWVRGVLFHSGGKFILSCAD 358
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
+ S G + T+ ++K T L+ + H+ V AF + +AT + K+KIWD
Sbjct: 630 IASCG-ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 134 YEVLQTLPGHAKTLD---FSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGY 187
+++ T H++ ++ F+ K LLA G+ F L D + + GH+
Sbjct: 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----N 744
Query: 188 QIGKVSFRPYEDVLG 202
+ F P +++L
Sbjct: 745 SVNHCRFSPDDELLA 759
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%)
Query: 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99
G ++ +V G I +F G ++ S + T +W +PL ++
Sbjct: 1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1124
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------GHAKTL 147
H G V AF +G L+AT +I+IW++ ++L + G +
Sbjct: 1125 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 148 DFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204
FS V G +++ +G + + Y + +K + FR Y V +G
Sbjct: 1185 CFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLG 1240
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
T+ ++K T L+ + H+ V AF + +AT + K+KIWD +++ T
Sbjct: 645 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE 704
Query: 143 HAKTLD---FSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP 196
H++ ++ F+ K LLA G+ F L D + + GH+ + F P
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT----NSVNHCRFSP 760
Query: 197 YEDVLG 202
+++L
Sbjct: 761 DDELLA 766
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 13/177 (7%)
Query: 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99
G ++ +V G I +F G ++ S + T +W +PL ++
Sbjct: 1072 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK 1131
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------GHAKTL 147
H G V AF +G L+AT +I+IW++ ++L + G +
Sbjct: 1132 GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1191
Query: 148 DFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204
FS V G +++ +G + + Y + +K + FR Y V +G
Sbjct: 1192 CFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSP-DFRTYVTVDNLG 1247
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 30/158 (18%)
Query: 4 IYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASI---------NKFGQLRYQDVTMGEIV 53
++NR+G L L H + V + F + +AS N+ GQL
Sbjct: 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----------- 213
Query: 54 GNFRTGLGRTDVMR---VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALA 109
+T G + +R +P ++ TV +W L++ L H V+ +A
Sbjct: 214 --LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVA 269
Query: 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
F P+G +A++ + +K+W+ R ++LQTL GH+ ++
Sbjct: 270 FRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 306
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 4 IYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASI---------NKFGQLRYQDVTMGEIV 53
++NR+G L L H + V + F + +AS N+ GQL
Sbjct: 411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL----------- 459
Query: 54 GNFRTGLGRTDVMR---VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALA 109
+T G + +R +P ++ TV +W L++ L H V +A
Sbjct: 460 --LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVA 515
Query: 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
F P+G +A++ + +K+W+ R ++LQTL GH+ ++
Sbjct: 516 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 552
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 24/156 (15%)
Query: 4 IYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASI---------NKFGQLRYQDVTMGEIV 53
++NR+G L L H + V + F + +AS N+ GQL + +
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL------LQTLT 177
Query: 54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHP 112
G+ + G + +P ++ TV +W L++ L H V +AF P
Sbjct: 178 GHSSSVWG----VAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSP 231
Query: 113 NGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLD 148
+G +A++ + +K+W+ R ++LQTL GH+ +++
Sbjct: 232 DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVN 266
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 4 IYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASI---------NKFGQLRYQDVTMGEIV 53
++NR+G L L H + V + F + +AS N+ GQL
Sbjct: 42 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----------- 90
Query: 54 GNFRTGLGRTDVMR---VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALA 109
+T G + +R +P ++ TV +W L++ L H V +A
Sbjct: 91 --LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 146
Query: 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
F P+G +A++ + +K+W+ R ++LQTL GH+ ++
Sbjct: 147 FSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 183
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 4 IYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVT---MGEIVGNFRTG 59
++NR+G L L H + V + F + +AS + ++ + + + G+ +
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSV 347
Query: 60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMA 118
G + +P ++ TV +W L++ L H V +AF P+G +A
Sbjct: 348 WG----VAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 119 TSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
++ + +K+W+ R ++LQTL GH+ ++
Sbjct: 402 SASDDKTVKLWN-RNGQLLQTLTGHSSSV 429
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 97 KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
++ H V +AF P+G +A++ + +K+W+ R ++LQTL GH+ ++
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSV 60
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 83 TVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP 141
TV +W L++ L H V +AF P+G +A++ + +K+W+ R ++LQTL
Sbjct: 39 TVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT 95
Query: 142 GHAKTL 147
GH+ ++
Sbjct: 96 GHSSSV 101
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 6/146 (4%)
Query: 4 IYNRDGTELHCLKEHGAVLK-LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR 62
++NR+G L L H + ++ + F + +AS + ++ + G+++
Sbjct: 206 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 264
Query: 63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSG 121
+ + P ++ TV +W L++ L H V +AF P+G +A++
Sbjct: 265 VNGVAFRPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASAS 322
Query: 122 KECKIKIWDLRKYEVLQTLPGHAKTL 147
+ +K+W+ R + LQTL GH+ ++
Sbjct: 323 DDKTVKLWN-RNGQHLQTLTGHSSSV 347
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 29/141 (20%)
Query: 4 IYNRDGTELHCLKEHGAVLK-LQFLRNHFLLASI---------NKFGQLRYQDVTMGEIV 53
++NR+G L L H + ++ + F + +AS N+ GQL
Sbjct: 452 LWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----------- 500
Query: 54 GNFRTGLGRTDVMR---VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALA 109
+T G + +R +P ++ TV +W L++ L H V +A
Sbjct: 501 --LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVA 556
Query: 110 FHPNGHLMATSGKECKIKIWD 130
F P+G +A++ + +K+W+
Sbjct: 557 FSPDGQTIASASSDKTVKLWN 577
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 96 IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLD------F 149
+K + H G V L + P+G +A++ + IKIW++ +V +T+P + D +
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 150 SQKGLLAVGTGSFVQILGDFSGSHNYSRYMGH 181
+++ L+++ F+ + GS + RY GH
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRY-GH 323
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
+ S G + T+ ++K T L+++ H+ V AF + +AT + K+KIW+
Sbjct: 636 IASCG-ADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMT 694
Query: 134 YEVLQTLPGHAKTLDF------SQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGY 187
E++ T H++ ++ S LLA G+ L D + + GH+
Sbjct: 695 GELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHT----N 750
Query: 188 QIGKVSFRPYEDVLG 202
+ F P + +L
Sbjct: 751 SVNHCRFSPDDKLLA 765
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 14/202 (6%)
Query: 15 LKEHGAVLK-LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73
L+ H +K + L+N LL S + G ++ ++ G +F G ++
Sbjct: 1046 LRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133
S + T +W PL ++ H G V AF + L+AT +I+IW++
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 134 YEVLQ-----------TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHS 182
E+L T G L FS G + + G +++ +G + + Y +
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWWNVVTGESSQTFYTNGT 1224
Query: 183 MVKGYQIGKVSFRPYEDVLGIG 204
+K + F+ Y V +G
Sbjct: 1225 NLKKIHVSP-DFKTYVTVDNLG 1245
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 46 DVTMGEIVGNFRTGLGRT-DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGP 104
D+ ++G TG T +P N + + S V +W + + + H
Sbjct: 831 DIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSW 890
Query: 105 VSALAFHPNGHLMATSGKECKIKIWDLRK 133
V + F P+G TS + I++W+ +K
Sbjct: 891 VHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 10 TELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV 68
T LH L+ H V LQF H + S++ +R DV G + T M +
Sbjct: 270 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDT--SIRVWDVETGNCIHTLTGHQSLTSGMEL 327
Query: 69 NPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC---HQGPVSALAFHPNGHLMATSGKECK 125
+ ++ G++ TV +W T L + HQ V+ L F+ N + TS +
Sbjct: 328 K--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGT 383
Query: 126 IKIWDLRKYEVLQTL 140
+K+WDL+ E ++ L
Sbjct: 384 VKLWDLKTGEFIRNL 398
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 61 GRTDVMRVNPFNGV-VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMAT 119
G T+ + F+G+ V G ++ +W T + + HQ S + N ++ +
Sbjct: 277 GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVS 334
Query: 120 SGKECKIKIWDLRKYEVLQTLPG 142
+ +KIWD++ + LQTL G
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQG 357
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Query: 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-VMRVNPFNGVVSLG 78
+ LQF N + S + L+ G+ RT +G T V + ++ G
Sbjct: 121 VITCLQFCGNRIVSGSDDN--TLKVWSAVTGKC---LRTLVGHTGGVWSSQMRDNIIISG 175
Query: 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
+ T+ +W T + + H V + H + + ++ +++WD+ + L
Sbjct: 176 STDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLH 233
Query: 139 TLPGHAKTLDFSQKGLLAVGTGSF 162
L GH + Q V +G++
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAY 257
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 10/146 (6%)
Query: 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--VVS 76
G V Q N + S ++ L+ + GE + T G T +R + VVS
Sbjct: 160 GGVWSSQMRDNIIISGSTDR--TLKVWNAETGECI---HTLYGHTSTVRCMHLHEKRVVS 214
Query: 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV 136
G T+ +W T L ++ H V + + +G + + + +K+WD
Sbjct: 215 -GSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETC 271
Query: 137 LQTLPGHAKTLDFSQKGLLAVGTGSF 162
L TL GH + Q + V +GS
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHVVSGSL 297
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 66 MRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK 125
+ +P ++ G G + ++ T L + H P+ +L F P+ L+ T+ +
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 126 IKIWDLRKYEVLQTLPGHAK 145
IKI+D++ + TL GHA
Sbjct: 230 IKIYDVQHANLAGTLSGHAS 249
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Query: 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91
+ AS + +R D+ G+ + + G + +P + ++ G G V ++ +
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES 153
Query: 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHA---KTLD 148
+ + ++A+ P+G +A+ + I I+D+ ++L TL GHA ++L
Sbjct: 154 GKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 149 FSQKGLLAV 157
FS L V
Sbjct: 214 FSPDSQLLV 222
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
T +W T H G V +L+ P+ L + + K+WD+R+ QT G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 143 HAKTLD----FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198
H ++ F A G+ L D Y +++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSG 282
Query: 199 DVLGIGH 205
+L G+
Sbjct: 283 RLLLAGY 289
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
T +W T H G V +L+ P+ L + + K+WD+R+ QT G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 143 HAKTLD----FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198
H ++ F A G+ L D Y +++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSG 282
Query: 199 DVLGIGH 205
+L G+
Sbjct: 283 RLLLAGY 289
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
T +W T H G V +L+ P+ L + + K+WD+R+ QT G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 143 HAKTLD----FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198
H ++ F A G+ L D Y +++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSG 282
Query: 199 DVLGIGH 205
+L G+
Sbjct: 283 RLLLAGY 289
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
T +W T H G V +L+ P+ L + + K+WD+R+ QT G
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 143 HAKTLD----FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198
H ++ F A G+ L D Y +++ G I VSF
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSG 282
Query: 199 DVLGIGH 205
+L G+
Sbjct: 283 RLLLAGY 289
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
T +W T H G V +L+ P+ L + + K+WD+R+ QT G
Sbjct: 176 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 235
Query: 143 HAKTLD----FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198
H ++ F A G+ L D Y +++ G I VSF
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSG 293
Query: 199 DVLGIGH 205
+L G+
Sbjct: 294 RLLLAGY 300
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG 142
TV +W + + H G VS +A P+G L A+ GK+ + +WDL + + L +L
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 143 HA 144
++
Sbjct: 602 NS 603
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120
G + V+P + + G G V +W L + + + AL F PN + + +
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNRYWLC-A 619
Query: 121 GKECKIKIWDLRKYEVLQTL 140
E IKIWDL +++ L
Sbjct: 620 ATEHGIKIWDLESKSIVEDL 639
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-----VV 75
VL + F ++ + S + LR +V GE + G TD + F+ V+
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRG-AHTDWVSCVRFSPSLDAPVI 169
Query: 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE 135
G V +W T + + H V+++ P+G L A+S K+ ++WDL K E
Sbjct: 170 VSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGE 229
Query: 136 VLQTLPGHA 144
L + A
Sbjct: 230 ALSEMAAGA 238
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK 122
+DV N N VS ++ +W K L H V ++AF P+ + + G+
Sbjct: 71 SDVALSNNGNFAVSASWDH-SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 123 ECKIKIWDLRKYEVLQTLPGHAKT 146
+ +++W++ K E + TL A T
Sbjct: 130 DNALRVWNV-KGECMHTLSRGAHT 152
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 9/146 (6%)
Query: 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78
G+VL LQ+ + S + +R DV GE++ +R N NG++
Sbjct: 174 GSVLCLQYDERVIITGSSD--STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTC 229
Query: 79 HSGGTVTMWK---PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE 135
++ +W PT ++ H+ V+ + F + ++++ SG IK+W+ E
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR-TIKVWNTSTCE 287
Query: 136 VLQTLPGHAKTLDFSQKGLLAVGTGS 161
++TL GH + + Q V +GS
Sbjct: 288 FVRTLNGHKRGIACLQYRDRLVVSGS 313
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 9 GTELHCLKEHG-AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR 67
G L+ L H AVL L+F N+ ++ + +K + D+ + R +G +
Sbjct: 203 GEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 68 VNPFNGVVSLGHSGG-TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKI 126
V F+ + SG T+ +W +T + + H+ ++ L + L+ + + I
Sbjct: 261 VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 318
Query: 127 KIWDLRKYEVLQTLPGH---AKTLDFSQKGLLA 156
++WD+ L+ L GH + + F K +++
Sbjct: 319 RLWDIECGACLRVLEGHEELVRCIRFDNKRIVS 351
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 105 VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK---TLDFSQKG-LLAVGTG 160
+ ++ F P+G +AT ++ I+IWD+ +++ L GH + +LD+ G L G+G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 84 VTMWKPTTAAPLIKMLCHQGPVSALAFH------PNGHLMATSGKECKIKIWDLRK 133
V W + PL+ + H+ V ++A P ++ AT +CK +IW +K
Sbjct: 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 33/72 (45%)
Query: 69 NPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKI 128
+P ++ G + +W ++ + H+ + +L + P+G + + + ++I
Sbjct: 132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191
Query: 129 WDLRKYEVLQTL 140
WDLR + TL
Sbjct: 192 WDLRTGQCSLTL 203
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAV 157
H V +L+F+ +G + ++G + K++ WD++ E + TL H ++ ++ +LAV
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI-EEDILAV 345
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKM-LCHQGPVS-ALAFHPNGHLMATSGKECKIK 127
P + +G T+++W P IK L P ALA P+ + + + I
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 128 IWDLRKYEVLQTLPGH---AKTLDFSQKG 153
+WDL +++ GH A +D S G
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDG 195
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAV 157
H V +L+F+ +G + ++G + K++ WD++ E + TL H ++ ++ +LAV
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI-EEDILAV 355
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP 141
G + +++ T P K++ H GP+S L F+ L+ ++ + ++IW
Sbjct: 227 GAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY 286
Query: 142 GHAKTL 147
GH++++
Sbjct: 287 GHSQSI 292
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFS-QKGLLAV 157
H ++ L P+G L+A++GK+ +I +W+L + + TL + +L FS + LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 158 GTGSFVQIL 166
T + +++
Sbjct: 255 ATATGIKVF 263
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFN--GVVSLGHSGGTVTM 86
+ L AS +K LR DV GE F +G ++DVM V+ ++ G T+ +
Sbjct: 79 YALSASWDK--TLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 87 WKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL 140
W L +L H VS + PN + ++G + +K W+L ++++
Sbjct: 134 W-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 141 PGH---AKTLDFSQKGLLAVGTGSFVQIL 166
GH TL S G L G +I+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM 221
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFS-QKGLLAV 157
H ++ L P+G L+A++GK+ +I +W+L + + TL + +L FS + LA
Sbjct: 195 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 254
Query: 158 GTGSFVQIL 166
T + +++
Sbjct: 255 ATATGIKVF 263
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFN--GVVSLGHSGGTVTM 86
+ L AS +K LR DV GE F +G ++DVM V+ ++ G T+ +
Sbjct: 79 YALSASWDK--TLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 87 WKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL 140
W L +L H VS + PN + ++G + +K W+L ++++
Sbjct: 134 W-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 141 PGH---AKTLDFSQKGLLAVGTGSFVQIL 166
GH TL S G L G +I+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM 221
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFS-QKGLLAV 157
H ++ L P+G L+A++GK+ +I +W+L + + TL + +L FS + LA
Sbjct: 189 HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAA 248
Query: 158 GTGSFVQIL 166
T + +++
Sbjct: 249 ATATGIKVF 257
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFN--GVVSLGHSGGTVTM 86
+ L AS +K LR DV GE F +G ++DVM V+ ++ G T+ +
Sbjct: 73 YALSASWDK--TLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 87 WKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL 140
W L +L H VS + PN + ++G + +K W+L ++++
Sbjct: 128 W-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 141 PGH---AKTLDFSQKGLLAVGTGSFVQIL 166
GH TL S G L G +I+
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIM 215
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFS-QKGL 154
+ H ++ L P+G L+A++GK+ +I +W+L + + TL + +L FS +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251
Query: 155 LAVGTGSFVQIL 166
LA T + +++
Sbjct: 252 LAAATATGIKVF 263
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFN--GVVSLGHSGGTVTM 86
+ L AS +K LR DV GE F +G ++DVM V+ ++ G T+ +
Sbjct: 79 YALSASWDK--TLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 87 WKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL 140
W L +L H VS + PN + ++G + +K W+L ++++
Sbjct: 134 W-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 141 PGH---AKTLDFSQKGLLAVGTGSFVQIL 166
GH TL S G L G +I+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM 221
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFS-QKGL 154
+ H ++ L P+G L+A++GK+ +I +W+L + + TL + +L FS +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYW 251
Query: 155 LAVGTGSFVQIL 166
LA T + +++
Sbjct: 252 LAAATATGIKVF 263
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 18/149 (12%)
Query: 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFN--GVVSLGHSGGTVTM 86
+ L AS +K LR DV GE F +G ++DVM V+ ++ G T+ +
Sbjct: 79 YALSASWDK--TLRLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 87 WKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL 140
W L +L H VS + PN + ++G + +K W+L ++++
Sbjct: 134 W-TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 141 PGH---AKTLDFSQKGLLAVGTGSFVQIL 166
GH TL S G L G +I+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIM 221
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL 131
T+ +W T + + HQ V ++AF P+ + ++G E +IK+W++
Sbjct: 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 13/108 (12%)
Query: 67 RVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKI 126
+V PF + G + +W T H+ V+ L+ PNG +AT GK+ K+
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKL 237
Query: 127 KIWDL-------RKYEVLQTLPGHAKTLDFSQK-GLLAVGTGSFVQIL 166
IWD+ R+++ T+ + F+ K +AVGT V+I
Sbjct: 238 LIWDILNLTYPQREFDAGSTI----NQIAFNPKLQWVAVGTDQGVKIF 281
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP-VSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQT 139
TV +W + P + Q V+ + ++P + M T+ + IKIWD + + T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 140 LPGHAKTLDFS 150
L GH + F+
Sbjct: 224 LEGHMSNVSFA 234
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP-VSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQT 139
TV +W + P + Q V+ + ++P + M T+ + IKIWD + + T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 140 LPGHAKTLDFS 150
L GH + F+
Sbjct: 224 LEGHMSNVSFA 234
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 38 KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP--- 94
K ++Y D T+ +++ V P +++ G TV++W +A
Sbjct: 37 KLVSVKYDDFTLIDVLDETAHKKAIRSVAW-RPHTSLLAAGSFDSTVSIWAKEESADRTF 95
Query: 95 ----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL----RKYEVLQTLPGHAKT 146
L + H+ V +A+ +G+ +AT ++ + IW+ +YE + L H++
Sbjct: 96 EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 147 L 147
+
Sbjct: 156 V 156
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAK--TLDFS-QKGL 154
+ H ++ L P+G L+A++GK+ +I +W+L + TL + +L FS +
Sbjct: 192 FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYW 251
Query: 155 LAVGTGSFVQIL 166
LA T + +++
Sbjct: 252 LAAATATGIKVF 263
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 53/140 (37%), Gaps = 12/140 (8%)
Query: 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89
+ L AS +K LR DV GE F + ++ + G T+ +W
Sbjct: 79 YALSASWDK--TLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-T 135
Query: 90 TTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
L +L H VS + PN + ++G + +K W+L ++++ GH
Sbjct: 136 IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGH 195
Query: 144 ---AKTLDFSQKGLLAVGTG 160
TL S G L G
Sbjct: 196 NSNINTLTASPDGTLIASAG 215
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP-VSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQT 139
TV +W + P + Q V+ + ++P + M T+ + IKIWD + + T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 140 LPGHAKTLDFS 150
L GH + F+
Sbjct: 224 LEGHMSNVSFA 234
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140
T+ +W T + + + H VS FHP ++ + ++ +KIW+ Y+V +TL
Sbjct: 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL 266
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP-VSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQT 139
TV +W + P + Q V+ + ++P + M T+ + IKIWD + + T
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 140 LPGHAKTLDFS 150
L GH + F+
Sbjct: 224 LEGHMSNVSFA 234
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
H ++ L F P+G + +S ++ ++KIW ++ +TL GH T+
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 181
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 37 NKFGQLRY--QDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94
N G +Y QD + E V R + NP +VS G V +W
Sbjct: 133 NTLGVCKYTVQDESHSEWVSCVRFSPNSS-----NPI--IVSCGWDK-LVKVWNLANCKL 184
Query: 95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH--AKTLDFS-Q 151
+ H G ++ + P+G L A+ GK+ + +WDL + + L TL G L FS
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 244
Query: 152 KGLLAVGTGSFVQI 165
+ L TG ++I
Sbjct: 245 RYWLCAATGPSIKI 258
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD---LRKY 134
G GT+ +W TT + + H V ++AF + + + ++ IK+W+ + KY
Sbjct: 81 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 140
Query: 135 EV 136
V
Sbjct: 141 TV 142
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 57 RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI----KMLCHQGPVSALAFHP 112
+T G TDV V+ G++ + G V +W+ L+ H V L+
Sbjct: 92 QTEAGVTDVAWVSE-KGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS 149
Query: 113 NGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLD 148
+G + GK+ +K+WDL + VL++ H+ ++
Sbjct: 150 DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN 185
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
H ++ L F P+G + +S ++ ++KIW ++ +TL GH T+
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATV 184
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 13/134 (9%)
Query: 37 NKFGQLRY--QDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94
N G +Y QD + E V R + NP +VS G V +W
Sbjct: 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSS-----NPI--IVSCGWDK-LVKVWNLANCKL 207
Query: 95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH--AKTLDFS-Q 151
+ H G ++ + P+G L A+ GK+ + +WDL + + L TL G L FS
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 267
Query: 152 KGLLAVGTGSFVQI 165
+ L TG ++I
Sbjct: 268 RYWLCAATGPSIKI 281
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD---LRKY 134
G GT+ +W TT + + H V ++AF + + + ++ IK+W+ + KY
Sbjct: 104 GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163
Query: 135 EV 136
V
Sbjct: 164 TV 165
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTG 160
H+ V +LAF P+G +A+ + ++IW R+Y LPG+ ++G+ G+
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIW--RQY-----LPGN-------EQGVACSGSD 238
Query: 161 SFVQILGDFSGSHNYSRY 178
+ + SG H+ + Y
Sbjct: 239 PSWKCICTLSGFHSRTIY 256
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDL---RKYEVLQTLPGHAKTL 147
H+ V ++A+ P+G+L+AT ++ + +W++ +YE + L H + +
Sbjct: 104 HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGS 161
QG + AL++ + AT G + I++WD+ + +Q + L Q G++A G G
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 162 FVQILGDFSGSHNYSRYMGHSMV 184
+ + D G+ N+ +GH V
Sbjct: 312 IISLSLD--GTLNFYE-LGHDEV 331
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%)
Query: 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC 124
V V+ +V G T+ +W L + H + + + ++ +
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 125 KIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFS----GSHNYSR 177
I+IWDL E++ TL GH + GLL + V D S +++YSR
Sbjct: 333 TIRIWDLENGELMYTLQGHTALV-----GLLRLSDKFLVSAAADGSIRGWDANDYSR 384
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL 131
+ V G + ++ L+++ H G V AL + +G ++ + + +++WD+
Sbjct: 132 DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDI 190
Query: 132 RKYEVLQTLPGHAKT---LDFSQ-KGLLAVGTGS 161
+K GH T LD + K + + TGS
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGS 161
QG + AL++ + AT G + I++WD+ + +Q + L Q G++A G G
Sbjct: 253 QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR 311
Query: 162 FVQILGDFSGSHNYSRYMGHSMV 184
+ + D G+ N+ +GH V
Sbjct: 312 IISLSLD--GTLNFYE-LGHDEV 331
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 9/117 (7%)
Query: 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC 124
V V+ +V G T+ +W L + H + + + ++ +
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 125 KIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFS----GSHNYSR 177
I+IWDL E+ TL GH + GLL + V D S +++YSR
Sbjct: 333 TIRIWDLENGELXYTLQGHTALV-----GLLRLSDKFLVSAAADGSIRGWDANDYSR 384
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL 131
+ V G + ++ L+++ H G V AL + +G ++ + + +++WD+
Sbjct: 132 DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDI 190
Query: 132 RKYEVLQTLPGHAKT---LDFSQ-KGLLAVGTGS 161
+K GH T LD + K + + TGS
Sbjct: 191 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 96 IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTL 147
IK+ H+ P++ + ++ G L+ + K+ +W E L TL GH T+
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI 77
>pdb|2NQ9|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Endonuclease Iv (Endo Iv) Y72a Mutant Bound To Damaged
Dna
Length = 285
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWD-----LRKYE----VLQTLPGHAKTLDFS 150
C Q +S L FHP HLM S ++C +I + L K + V++ G L F
Sbjct: 98 CEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFK 157
Query: 151 QKGLLAVGTG 160
+ L A+ G
Sbjct: 158 FEHLAAIIDG 167
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 96 IKMLC-HQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-------YEVLQTLPGHAKT 146
+ ++C H PV +A+ P N +++A+ ++C + +W++ E + TL GH K
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 147 LDF------SQKGLLAVGTGSFVQI 165
+ +Q LL+ G + + +
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILV 158
>pdb|1QUM|A Chain A, Crystal Structure Of Escherichia Coli Endonuclease Iv In
Complex With Damaged Dna
pdb|1QTW|A Chain A, High-resolution Crystal Structure Of The Escherichia Coli
Dna Repair Enzyme Endonuclease Iv
Length = 285
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWD-----LRKYE----VLQTLPGHAKTLDFS 150
C Q +S L FHP HLM S ++C +I + L K + V++ G L F
Sbjct: 98 CEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFK 157
Query: 151 QKGLLAVGTG 160
+ L A+ G
Sbjct: 158 FEHLAAIIDG 167
>pdb|2NQH|A Chain A, High Resolution Crystal Structure Of Escherichia Coli
Endonuclease Iv (Endo Iv) E261q Mutant
pdb|2NQJ|A Chain A, Crystal Structure Of Escherichia Coli Endonuclease Iv
(Endo Iv) E261q Mutant Bound To Damaged Dna
pdb|2NQJ|B Chain B, Crystal Structure Of Escherichia Coli Endonuclease Iv
(Endo Iv) E261q Mutant Bound To Damaged Dna
Length = 285
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWD-----LRKYE----VLQTLPGHAKTLDFS 150
C Q +S L FHP HLM S ++C +I + L K + V++ G L F
Sbjct: 98 CEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFK 157
Query: 151 QKGLLAVGTG 160
+ L A+ G
Sbjct: 158 FEHLAAIIDG 167
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 12/130 (9%)
Query: 82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVLQT 139
GT +W + L H V L P+ G+ + G + K +WD+R + +Q
Sbjct: 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA 235
Query: 140 LPGHAKTLD----FSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQ------I 189
H ++ + A G+ L D + Y S++ G
Sbjct: 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295
Query: 190 GKVSFRPYED 199
G++ F Y D
Sbjct: 296 GRLLFAGYND 305
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVL----QTLPGHAKTLDFSQKG-L 154
H+ V+++ ++P+G A+ + +++DLR EV +++ A ++DFS G L
Sbjct: 239 HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRL 298
Query: 155 LAVGTGSFVQILGDFSGSHNYSRYMGH 181
L G + + D S GH
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGH 325
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 95 LIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLR 132
+ K H+ V+ F+P LMATS + +K+WDLR
Sbjct: 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 235
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 95 LIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLR 132
+ K H+ V+ F+P LMATS + +K+WDLR
Sbjct: 196 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLR 234
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 25/92 (27%)
Query: 101 HQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-------YEVLQTLPGHAKTLDF--- 149
H PV +A+ P N +++A+ ++C + +W++ E + TL GH K +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 150 ---SQKGLLA-----------VGTGSFVQILG 167
+Q LL+ VGTG+ V LG
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG 171
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 46 DVTMGEIVGNFRTGL--GRT-DVMR--VNPFNGVVSL-GHSGGTVTMWKPTTAAPLIKML 99
DVT G+ + F + G T DV+ +N N + + G TV +W + ++
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 100 -CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138
H+G ++++ F P+G T + +++D+R LQ
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 13/119 (10%)
Query: 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL 131
N +VS G + +W T+ + H V AF PNG +A G + I++L
Sbjct: 79 NWIVSASQDGRLI-VWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137
Query: 132 RK----------YEVLQTLPGHAKTLDF--SQKGLLAVGTGSFVQILGDFSGSHNYSRY 178
VL G+A + + Q+ L G+G +L D + S +
Sbjct: 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIF 196
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 78 GHSGGTVTMWKPTTAAPLIKM----LCHQGPVSALAFHPNGHLMATSGKECKIKIW 129
G+S G +W A ++ + H+G +S L +G + T + +KIW
Sbjct: 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 90 TTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEV-LQTLPGHAKTL 147
TT+ P + H V+ L+F+P ++AT + + +WDLR ++ L T H +
Sbjct: 263 TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWK-PTTAAPLIKMLCHQGPVSALAFHP-NGHLM 117
+ + NP++ +++ G + TV +W L H+ + + + P N ++
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 118 ATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN 174
A+SG + ++ +WDL K G ++ + ++ G LL + G +I DFS + N
Sbjct: 336 ASSGTDRRLNVWDLSKI-------GEEQSAEDAEDGPPELLFIHGGHTAKI-SDFSWNPN 387
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWK-PTTAAPLIKMLCHQGPVSALAFHP-NGHLM 117
+ + NP++ +++ G + TV +W L H+ + + + P N ++
Sbjct: 278 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 337
Query: 118 ATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN 174
A+SG + ++ +WDL K G ++ + ++ G LL + G +I DFS + N
Sbjct: 338 ASSGTDRRLHVWDLSKI-------GEEQSTEDAEDGPPELLFIHGGHTAKI-SDFSWNPN 389
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 90 TTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEV-LQTLPGHAKTL 147
TT+ P + H V+ L+F+P ++AT + + +WDLR ++ L T H +
Sbjct: 263 TTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEI 322
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWK-PTTAAPLIKMLCHQGPVSALAFHP-NGHLM 117
+ + NP++ +++ G + TV +W L H+ + + + P N ++
Sbjct: 276 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETIL 335
Query: 118 ATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN 174
A+SG + ++ +WDL K G ++ + ++ G LL + G +I DFS + N
Sbjct: 336 ASSGTDRRLNVWDLSKI-------GEEQSAEDAEDGPPELLFIHGGHTAKI-SDFSWNPN 387
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWK-PTTAAPLIKMLCHQGPVSALAFHP-NGHLM 117
+ + NP++ +++ G + TV +W L H+ + + + P N ++
Sbjct: 280 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 339
Query: 118 ATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN 174
A+SG + ++ +WDL K G ++ + ++ G LL + G +I DFS + N
Sbjct: 340 ASSGTDRRLHVWDLSKI-------GEEQSTEDAEDGPPELLFIHGGHTAKI-SDFSWNPN 391
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWK-PTTAAPLIKMLCHQGPVSALAFHP-NGHLM 117
+ + NP++ +++ G + TV +W L H+ + + + P N ++
Sbjct: 282 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 341
Query: 118 ATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN 174
A+SG + ++ +WDL K G ++ + ++ G LL + G +I DFS + N
Sbjct: 342 ASSGTDRRLHVWDLSKI-------GEEQSTEDAEDGPPELLFIHGGHTAKI-SDFSWNPN 393
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWK-PTTAAPLIKMLCHQGPVSALAFHP-NGHLM 117
+ + NP++ +++ G + TV +W L H+ + + + P N ++
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETIL 333
Query: 118 ATSGKECKIKIWDLRK 133
A+SG + ++ +WDL K
Sbjct: 334 ASSGTDRRLNVWDLSK 349
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 91 TAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEV-LQTLPGHAKTL 147
T+ P + H V+ L+F+P ++AT + + +WDLR ++ L + H +
Sbjct: 262 TSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEI 320
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 104 PVSALAFHPNG-HLMATSGKECKIKIWDLRK 133
P+ + HPN H++AT G++ + IWD+R+
Sbjct: 238 PLHCVDRHPNQQHVVATGGQDGMLSIWDVRQ 268
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 50 GEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPV 105
G+ + N R + + +NP + ++ TV +W A + L H+ PV
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEV 136
+A F P+G + T+ ++ +I+++ +++
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDC 330
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 50 GEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPV 105
G+ + N R + + +NP + ++ TV +W A + L H+ PV
Sbjct: 240 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299
Query: 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEV 136
+A F P+G + T+ ++ +I+++ +++
Sbjct: 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDC 330
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 77 LGHSGGTVTMWKPTTAAPLI-KMLC---HQGPVSALAFHPNGHLMATSGKECKIKIWDLR 132
+ G V +W+ LI C H VS ++ +G + K+ IK+WDL
Sbjct: 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157
Query: 133 KYEVLQTLPGHAK 145
+ VL + HA
Sbjct: 158 QQVVLSSYRAHAA 170
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 50 GEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMW---KPTTAAPLIKMLCHQGPV 105
G+ + N R + + +NP + ++ TV +W + A + L H+ PV
Sbjct: 241 GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 300
Query: 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEV 136
+A F P+G + T+ ++ +I+++ +++
Sbjct: 301 NAACFSPDGARLLTTDQKSEIRVYSASQWDC 331
>pdb|2P4O|A Chain A, Crystal Structure Of A Putative Lactonase Of The Smp-
30GLUCONOLACTONASELRE-Like Region Family (Npun_f0524)
From Nostoc Punctiforme Pcc 73102 At 1.90 A Resolution
Length = 306
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRK----YEVLQTLP 141
+G VS LAF NG L+AT I + L K E L TLP
Sbjct: 71 EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP 114
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH 143
V ++ + PL ++ HQG V +L+F +G +++ S + K+W ++ ++ L H
Sbjct: 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISGSWDKTA-KVW--KEGSLVYNLQAH 141
Query: 144 ------AKTLDFSQKGLLAVGTGSFV------QILGDFSGSHN 174
AK + FS+ L + +++ FSG HN
Sbjct: 142 NASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHN 184
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 101 HQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYE-VLQTLPGH 143
H+ + A+++ P +++AT+ + ++K+WD+R+ L TL H
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/65 (18%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP---VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139
+V +W ++ ++++L + P +S++A+ G+ +A ++++WD+++ + L+
Sbjct: 137 SVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 195
Query: 140 LPGHA 144
+ H+
Sbjct: 196 MTSHS 200
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIW 129
G + + +WK T A + ++ H V +L P+G +A++ + +++W
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/65 (18%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP---VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139
+V +W ++ ++++L + P +S++A+ G+ +A ++++WD+++ + L+
Sbjct: 126 SVYLWS-ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184
Query: 140 LPGHA 144
+ H+
Sbjct: 185 MTSHS 189
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIW 129
G + + +WK T A + ++ H V +L P+G +A++ + +++W
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|3E80|A Chain A, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|B Chain B, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
pdb|3E80|C Chain C, Structure Of Heparinase Ii Complexed With Heparan Sulfate
Degradation Disaccharide Product
Length = 749
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 104 PVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGS 161
P+S + P G ++A +G E I + +Y L A KG LA+ GS
Sbjct: 346 PLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 405
Query: 162 FVQILGDFSGSHN---YSRYMGHSMVKGYQ 188
+ G ++ HN + R + H+ + Y
Sbjct: 406 YTGSSGGYNSPHNKNFFKRTIAHNSLLIYD 435
>pdb|2FUQ|A Chain A, Crystal Structure Of Heparinase Ii
pdb|2FUQ|B Chain B, Crystal Structure Of Heparinase Ii
Length = 747
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 104 PVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGS 161
P+S + P G ++A +G E I + +Y L A KG LA+ GS
Sbjct: 344 PLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 403
Query: 162 FVQILGDFSGSHN---YSRYMGHSMVKGYQ 188
+ G ++ HN + R + H+ + Y
Sbjct: 404 YTGSSGGYNSPHNKNFFKRTIAHNSLLIYD 433
>pdb|3E7J|A Chain A, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
pdb|3E7J|B Chain B, Heparinaseii H202a/y257a Double Mutant Complexed With A
Heparan Sulfate Tetrasaccharide Substrate
Length = 749
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 104 PVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGS 161
P+S + P G ++A +G E I + +Y L A KG LA+ GS
Sbjct: 346 PLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGS 405
Query: 162 FVQILGDFSGSHN---YSRYMGHSMVKGYQ 188
+ G ++ HN + R + H+ + Y
Sbjct: 406 YTGSSGGYNSPHNKNFFKRTIAHNSLLIYD 435
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/65 (18%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 83 TVTMWKPTTAAPLIKMLCHQGP---VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139
+V +W ++ ++++L + P +S++A+ G+ +A ++++WD+++ + L+
Sbjct: 46 SVYLWSASSG-DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104
Query: 140 LPGHA 144
+ H+
Sbjct: 105 MTSHS 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,985,402
Number of Sequences: 62578
Number of extensions: 443864
Number of successful extensions: 1628
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 262
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)