Query 041916
Match_columns 359
No_of_seqs 553 out of 3486
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:01:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1272 WD40-repeat-containing 100.0 1.1E-53 2.4E-58 366.2 15.3 338 1-345 192-545 (545)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-38 3.4E-43 270.1 16.3 227 2-245 199-437 (459)
3 KOG0271 Notchless-like WD40 re 100.0 8E-37 1.7E-41 256.8 20.0 223 1-228 138-439 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-37 3.4E-42 264.0 15.4 209 1-214 242-458 (459)
5 KOG0263 Transcription initiati 100.0 2.4E-35 5.2E-40 268.6 20.8 201 8-213 440-646 (707)
6 KOG0271 Notchless-like WD40 re 100.0 3.6E-35 7.8E-40 246.9 20.1 248 11-264 107-434 (480)
7 KOG0279 G protein beta subunit 100.0 1.2E-33 2.7E-38 228.6 24.4 212 1-214 86-311 (315)
8 KOG0279 G protein beta subunit 100.0 5.9E-33 1.3E-37 224.7 22.1 208 2-229 40-263 (315)
9 KOG0315 G-protein beta subunit 100.0 2.1E-32 4.5E-37 218.3 23.3 207 1-213 21-242 (311)
10 KOG0286 G-protein beta subunit 100.0 1.8E-32 4E-37 223.2 23.0 197 11-213 137-342 (343)
11 KOG0286 G-protein beta subunit 100.0 3.3E-32 7.2E-37 221.7 24.3 213 2-218 79-305 (343)
12 KOG0316 Conserved WD40 repeat- 100.0 1.7E-32 3.7E-37 217.1 20.0 211 11-228 9-257 (307)
13 KOG0284 Polyadenylation factor 100.0 9.3E-33 2E-37 234.1 12.8 212 1-216 161-380 (464)
14 KOG0263 Transcription initiati 100.0 1E-31 2.2E-36 245.0 19.7 170 1-170 474-650 (707)
15 KOG0266 WD40 repeat-containing 100.0 9.7E-31 2.1E-35 242.7 26.3 215 1-217 182-410 (456)
16 KOG0273 Beta-transducin family 100.0 5.9E-31 1.3E-35 226.9 22.2 209 1-215 258-481 (524)
17 KOG0315 G-protein beta subunit 100.0 3.7E-30 7.9E-35 205.4 23.0 212 1-217 62-289 (311)
18 KOG0285 Pleiotropic regulator 100.0 6.5E-31 1.4E-35 219.6 17.5 214 10-228 142-389 (460)
19 KOG0310 Conserved WD40 repeat- 100.0 2.5E-31 5.4E-36 230.2 15.3 221 2-227 50-278 (487)
20 KOG0285 Pleiotropic regulator 100.0 1.8E-30 4E-35 216.9 19.7 214 1-220 174-393 (460)
21 KOG0316 Conserved WD40 repeat- 100.0 5.1E-30 1.1E-34 203.1 19.9 211 1-216 40-257 (307)
22 KOG0645 WD40 repeat protein [G 100.0 6.5E-29 1.4E-33 200.6 26.4 214 11-228 6-261 (312)
23 KOG0284 Polyadenylation factor 100.0 3.2E-31 7E-36 224.8 11.3 193 13-211 132-332 (464)
24 KOG0291 WD40-repeat-containing 100.0 3.3E-29 7.2E-34 227.2 25.0 210 2-216 332-550 (893)
25 KOG0295 WD40 repeat-containing 100.0 1.8E-30 3.9E-35 217.4 15.2 209 1-214 131-362 (406)
26 PTZ00421 coronin; Provisional 100.0 3.1E-28 6.7E-33 225.5 30.7 201 14-217 70-291 (493)
27 KOG0276 Vesicle coat complex C 100.0 3.2E-29 6.8E-34 223.0 21.2 213 1-218 36-259 (794)
28 KOG0282 mRNA splicing factor [ 100.0 7.2E-30 1.6E-34 220.9 16.5 210 2-214 239-460 (503)
29 KOG0295 WD40 repeat-containing 100.0 2E-29 4.3E-34 211.2 17.5 208 2-214 174-404 (406)
30 KOG0318 WD40 repeat stress pro 100.0 5.3E-28 1.1E-32 211.4 26.2 210 1-214 213-558 (603)
31 KOG0296 Angio-associated migra 100.0 9.6E-28 2.1E-32 201.2 25.1 208 3-215 89-397 (399)
32 KOG0266 WD40 repeat-containing 100.0 3.3E-28 7.2E-33 225.8 24.9 201 1-206 226-442 (456)
33 KOG0291 WD40-repeat-containing 100.0 4.6E-28 9.9E-33 219.8 24.8 209 3-216 290-508 (893)
34 PTZ00420 coronin; Provisional 100.0 3.8E-27 8.2E-32 219.4 31.3 212 2-216 56-293 (568)
35 KOG0265 U5 snRNP-specific prot 100.0 1.1E-28 2.4E-33 201.9 18.0 204 12-232 40-250 (338)
36 cd00200 WD40 WD40 domain, foun 100.0 4.8E-27 1E-31 204.7 28.0 212 1-217 32-250 (289)
37 cd00200 WD40 WD40 domain, foun 100.0 5.4E-27 1.2E-31 204.4 27.6 208 1-213 74-288 (289)
38 KOG0318 WD40 repeat stress pro 100.0 2.9E-27 6.3E-32 206.8 25.4 212 2-219 131-353 (603)
39 KOG0645 WD40 repeat protein [G 100.0 1.1E-26 2.4E-31 187.7 25.7 206 1-217 38-262 (312)
40 KOG0265 U5 snRNP-specific prot 100.0 1.3E-27 2.8E-32 195.7 19.2 216 2-218 71-298 (338)
41 PLN00181 protein SPA1-RELATED; 100.0 1.2E-26 2.7E-31 230.3 30.3 212 1-217 506-739 (793)
42 KOG0281 Beta-TrCP (transducin 100.0 1.1E-28 2.4E-33 205.7 12.0 203 1-228 218-428 (499)
43 KOG0282 mRNA splicing factor [ 100.0 1.5E-28 3.2E-33 212.9 13.0 216 10-230 205-464 (503)
44 KOG0278 Serine/threonine kinas 100.0 1.8E-28 3.9E-33 195.9 12.5 209 2-217 83-298 (334)
45 KOG0268 Sof1-like rRNA process 100.0 2.7E-28 5.9E-33 204.3 13.9 211 12-228 59-345 (433)
46 KOG0276 Vesicle coat complex C 100.0 2.9E-27 6.3E-32 210.6 21.2 207 1-212 78-295 (794)
47 KOG0273 Beta-transducin family 100.0 9.3E-27 2E-31 201.1 23.2 207 1-214 299-521 (524)
48 KOG0277 Peroxisomal targeting 100.0 2E-27 4.3E-32 190.4 16.6 211 1-215 84-308 (311)
49 PLN00181 protein SPA1-RELATED; 100.0 4.5E-26 9.8E-31 226.3 30.3 211 1-214 556-791 (793)
50 KOG0313 Microtubule binding pr 100.0 9.7E-27 2.1E-31 196.1 21.1 209 1-214 126-374 (423)
51 KOG0264 Nucleosome remodeling 100.0 3.6E-27 7.7E-32 203.0 18.2 202 14-227 172-403 (422)
52 KOG0275 Conserved WD40 repeat- 100.0 5E-28 1.1E-32 200.2 11.7 223 1-226 236-479 (508)
53 KOG0305 Anaphase promoting com 100.0 2.6E-26 5.5E-31 206.1 22.8 208 1-213 198-458 (484)
54 KOG0319 WD40-repeat-containing 100.0 4.2E-27 9.2E-32 213.2 17.5 208 1-213 388-616 (775)
55 KOG0283 WD40 repeat-containing 100.0 9.6E-27 2.1E-31 214.3 19.8 216 13-231 260-579 (712)
56 KOG0277 Peroxisomal targeting 100.0 6.3E-27 1.4E-31 187.6 16.2 200 12-227 54-264 (311)
57 KOG0640 mRNA cleavage stimulat 99.9 1.6E-26 3.5E-31 190.2 17.6 204 12-219 105-338 (430)
58 KOG0292 Vesicle coat complex C 99.9 1.3E-26 2.7E-31 213.8 18.9 210 1-214 32-278 (1202)
59 KOG0294 WD40 repeat-containing 99.9 6.2E-26 1.3E-30 187.1 20.7 196 12-214 36-279 (362)
60 KOG0319 WD40-repeat-containing 99.9 4.3E-26 9.3E-31 206.7 21.3 214 1-219 347-580 (775)
61 KOG0643 Translation initiation 99.9 3.1E-25 6.8E-30 179.1 22.4 208 2-214 34-315 (327)
62 KOG1446 Histone H3 (Lys4) meth 99.9 7.3E-25 1.6E-29 181.1 24.8 216 13-229 8-263 (311)
63 KOG0292 Vesicle coat complex C 99.9 3.1E-26 6.7E-31 211.3 17.2 210 20-233 11-285 (1202)
64 PTZ00420 coronin; Provisional 99.9 8.8E-25 1.9E-29 203.7 26.8 192 36-228 50-293 (568)
65 KOG0772 Uncharacterized conser 99.9 1.3E-25 2.9E-30 196.0 19.7 209 2-215 238-486 (641)
66 KOG0310 Conserved WD40 repeat- 99.9 2.6E-25 5.7E-30 193.1 19.5 205 1-213 91-306 (487)
67 KOG1446 Histone H3 (Lys4) meth 99.9 8.5E-24 1.9E-28 174.8 27.5 221 1-226 37-271 (311)
68 KOG0274 Cdc4 and related F-box 99.9 4.2E-25 9E-30 205.1 22.2 209 1-231 229-444 (537)
69 KOG0281 Beta-TrCP (transducin 99.9 2.7E-26 5.9E-31 191.5 12.7 204 1-228 258-477 (499)
70 KOG0289 mRNA splicing factor [ 99.9 7.4E-25 1.6E-29 187.7 21.5 209 1-213 284-503 (506)
71 KOG0278 Serine/threonine kinas 99.9 1.5E-26 3.2E-31 185.0 10.0 218 7-231 47-300 (334)
72 KOG0973 Histone transcription 99.9 4E-25 8.6E-30 208.6 21.2 209 11-224 61-320 (942)
73 KOG0275 Conserved WD40 repeat- 99.9 2.6E-26 5.7E-31 190.1 11.4 186 21-209 216-416 (508)
74 KOG0306 WD40-repeat-containing 99.9 1.9E-24 4.2E-29 196.4 24.4 250 1-269 395-664 (888)
75 PTZ00421 coronin; Provisional 99.9 1.9E-24 4.2E-29 200.3 25.1 193 21-217 23-246 (493)
76 KOG0296 Angio-associated migra 99.9 1.3E-24 2.7E-29 182.5 20.7 194 11-208 56-255 (399)
77 KOG0289 mRNA splicing factor [ 99.9 1.3E-24 2.9E-29 186.1 21.1 209 2-214 243-460 (506)
78 KOG0306 WD40-repeat-containing 99.9 5.4E-25 1.2E-29 199.9 19.8 210 2-228 436-664 (888)
79 KOG0269 WD40 repeat-containing 99.9 8.1E-26 1.8E-30 205.9 14.3 204 2-209 112-333 (839)
80 KOG0647 mRNA export protein (c 99.9 1.4E-24 3E-29 178.2 19.8 184 21-208 30-220 (347)
81 KOG0643 Translation initiation 99.9 3.9E-24 8.6E-29 172.7 21.2 196 14-214 5-218 (327)
82 KOG0283 WD40 repeat-containing 99.9 8.7E-25 1.9E-29 201.5 19.7 204 10-219 360-579 (712)
83 KOG0299 U3 snoRNP-associated p 99.9 8.3E-25 1.8E-29 188.7 18.1 208 17-224 200-418 (479)
84 KOG0641 WD40 repeat protein [G 99.9 7.2E-24 1.6E-28 167.5 21.4 191 16-212 86-299 (350)
85 KOG0646 WD40 repeat protein [G 99.9 2.1E-24 4.5E-29 186.5 19.6 197 19-217 81-308 (476)
86 KOG0288 WD40 repeat protein Ti 99.9 1.3E-25 2.9E-30 191.1 12.0 213 2-218 199-419 (459)
87 KOG0274 Cdc4 and related F-box 99.9 3.3E-24 7.1E-29 199.2 22.4 201 1-213 272-479 (537)
88 KOG0293 WD40 repeat-containing 99.9 1.6E-24 3.4E-29 184.6 18.1 211 11-228 216-470 (519)
89 KOG0293 WD40 repeat-containing 99.9 1.3E-24 2.9E-29 185.1 17.5 224 2-229 248-514 (519)
90 KOG0772 Uncharacterized conser 99.9 5E-25 1.1E-29 192.4 14.4 195 11-207 159-430 (641)
91 KOG1407 WD40 repeat protein [F 99.9 1.3E-23 2.8E-28 169.3 20.9 217 1-227 88-310 (313)
92 KOG0313 Microtubule binding pr 99.9 9.4E-24 2E-28 178.2 20.2 205 2-213 171-415 (423)
93 KOG0294 WD40 repeat-containing 99.9 1.8E-23 4E-28 172.6 21.2 131 1-133 64-198 (362)
94 KOG0288 WD40 repeat protein Ti 99.9 1.1E-24 2.3E-29 185.6 13.8 205 2-213 243-458 (459)
95 KOG1407 WD40 repeat protein [F 99.9 1.9E-23 4.2E-28 168.2 18.3 194 13-212 14-215 (313)
96 KOG0267 Microtubule severing p 99.9 2.7E-25 5.8E-30 201.2 8.2 194 11-209 62-261 (825)
97 KOG1332 Vesicle coat complex C 99.9 5.3E-23 1.1E-27 164.2 19.9 213 1-215 34-285 (299)
98 KOG0302 Ribosome Assembly prot 99.9 1.2E-23 2.7E-28 177.4 16.0 198 10-209 202-432 (440)
99 KOG0973 Histone transcription 99.9 1.6E-23 3.5E-28 197.8 18.7 188 17-205 10-238 (942)
100 KOG1036 Mitotic spindle checkp 99.9 1.4E-22 3.1E-27 166.9 21.6 204 21-230 16-264 (323)
101 KOG0268 Sof1-like rRNA process 99.9 1E-23 2.2E-28 177.0 14.8 211 2-219 91-348 (433)
102 KOG0300 WD40 repeat-containing 99.9 2.5E-23 5.5E-28 172.0 16.4 209 1-214 171-426 (481)
103 KOG2096 WD40 repeat protein [G 99.9 4.2E-23 9E-28 170.7 17.6 157 67-227 235-414 (420)
104 KOG0639 Transducin-like enhanc 99.9 1.3E-23 2.7E-28 183.2 14.1 209 1-215 441-662 (705)
105 KOG0264 Nucleosome remodeling 99.9 8.5E-23 1.8E-27 176.2 18.0 194 17-214 122-345 (422)
106 KOG0308 Conserved WD40 repeat- 99.9 2.6E-23 5.6E-28 186.4 14.9 204 2-210 49-279 (735)
107 KOG0640 mRNA cleavage stimulat 99.9 5.9E-23 1.3E-27 169.3 15.3 168 11-179 164-344 (430)
108 KOG0301 Phospholipase A2-activ 99.9 1.2E-22 2.7E-27 183.3 18.2 216 1-228 36-288 (745)
109 KOG0301 Phospholipase A2-activ 99.9 9.5E-23 2.1E-27 184.0 17.3 210 1-226 82-302 (745)
110 KOG1332 Vesicle coat complex C 99.9 6.1E-23 1.3E-27 163.9 14.1 197 16-216 8-241 (299)
111 KOG0270 WD40 repeat-containing 99.9 9E-23 2E-27 175.5 15.6 190 21-214 176-402 (463)
112 KOG1273 WD40 repeat protein [G 99.9 3.2E-22 7E-27 165.3 18.0 205 21-226 26-289 (405)
113 KOG0269 WD40 repeat-containing 99.9 2.3E-23 5.1E-28 190.0 11.2 192 22-227 91-295 (839)
114 KOG0308 Conserved WD40 repeat- 99.9 1.4E-22 3.1E-27 181.7 16.0 171 1-171 96-287 (735)
115 KOG0302 Ribosome Assembly prot 99.9 6.6E-22 1.4E-26 167.0 17.3 223 18-256 150-405 (440)
116 KOG2445 Nuclear pore complex c 99.9 4.7E-21 1E-25 157.9 21.7 189 16-208 10-249 (361)
117 KOG0300 WD40 repeat-containing 99.9 1.6E-22 3.6E-27 167.2 13.0 203 11-230 140-388 (481)
118 KOG0303 Actin-binding protein 99.9 8.7E-22 1.9E-26 167.2 17.5 200 14-228 76-294 (472)
119 KOG4283 Transcription-coupled 99.9 1E-21 2.3E-26 160.9 16.9 210 16-226 40-286 (397)
120 KOG1274 WD40 repeat protein [G 99.9 4.3E-21 9.4E-26 178.4 22.3 189 26-217 62-263 (933)
121 KOG0647 mRNA export protein (c 99.9 7.8E-21 1.7E-25 156.3 21.3 210 1-214 51-279 (347)
122 KOG0646 WD40 repeat protein [G 99.9 1.2E-21 2.6E-26 169.6 17.0 224 2-232 20-311 (476)
123 KOG0270 WD40 repeat-containing 99.9 4.1E-21 8.9E-26 165.3 18.7 193 17-212 241-445 (463)
124 KOG0299 U3 snoRNP-associated p 99.9 2.7E-21 5.8E-26 167.1 17.3 200 2-205 226-444 (479)
125 KOG4378 Nuclear protein COP1 [ 99.9 4E-21 8.7E-26 167.5 17.5 194 1-198 102-305 (673)
126 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.2E-19 4.8E-24 158.7 27.7 211 1-214 12-235 (300)
127 KOG0267 Microtubule severing p 99.9 1.2E-22 2.7E-27 184.0 7.0 193 16-213 25-223 (825)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.4E-19 5.3E-24 158.4 27.9 206 1-214 54-277 (300)
129 KOG1036 Mitotic spindle checkp 99.9 5.5E-20 1.2E-24 151.7 21.0 213 1-218 36-264 (323)
130 KOG2048 WD40 repeat protein [G 99.9 1.2E-19 2.7E-24 163.7 24.9 208 1-214 48-273 (691)
131 KOG0641 WD40 repeat protein [G 99.9 2.1E-19 4.6E-24 142.3 22.7 194 15-213 132-346 (350)
132 KOG1274 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 172.5 20.9 200 1-209 77-293 (933)
133 KOG1539 WD repeat protein [Gen 99.9 3.1E-20 6.6E-25 171.1 20.4 206 2-214 424-646 (910)
134 KOG2055 WD40 repeat protein [G 99.9 2.4E-20 5.1E-25 161.4 18.1 209 1-213 281-509 (514)
135 KOG4283 Transcription-coupled 99.9 3E-20 6.4E-25 152.4 17.1 210 1-215 125-364 (397)
136 KOG0650 WD40 repeat nucleolar 99.9 2.9E-20 6.2E-25 165.6 17.5 198 11-214 392-678 (733)
137 KOG0321 WD40 repeat-containing 99.9 3.7E-20 8.1E-25 166.0 17.8 216 14-231 95-394 (720)
138 KOG0639 Transducin-like enhanc 99.9 8E-21 1.7E-25 165.9 12.7 206 1-213 488-701 (705)
139 KOG1408 WD40 repeat protein [F 99.8 3.1E-20 6.7E-25 168.4 16.2 191 19-214 460-711 (1080)
140 KOG4378 Nuclear protein COP1 [ 99.8 6.9E-20 1.5E-24 159.9 16.6 185 22-213 83-277 (673)
141 KOG1034 Transcriptional repres 99.8 6.5E-19 1.4E-23 146.6 21.5 212 2-214 66-381 (385)
142 KOG0307 Vesicle coat complex C 99.8 9E-21 2E-25 180.3 11.3 200 12-215 58-283 (1049)
143 KOG2055 WD40 repeat protein [G 99.8 3.7E-19 8.1E-24 154.1 18.8 193 18-214 213-415 (514)
144 KOG1273 WD40 repeat protein [G 99.8 4.6E-19 1E-23 146.7 18.4 197 2-203 47-310 (405)
145 KOG0305 Anaphase promoting com 99.8 2.2E-19 4.8E-24 161.7 17.5 186 22-216 181-376 (484)
146 KOG2106 Uncharacterized conser 99.8 4.2E-18 9E-23 149.1 24.5 212 1-222 223-483 (626)
147 KOG2919 Guanine nucleotide-bin 99.8 2.7E-19 5.8E-24 148.6 15.8 201 2-207 135-361 (406)
148 KOG1408 WD40 repeat protein [F 99.8 7.4E-19 1.6E-23 159.6 18.9 227 1-229 347-714 (1080)
149 KOG1188 WD40 repeat protein [G 99.8 6.4E-19 1.4E-23 147.3 16.3 172 1-172 51-245 (376)
150 KOG2445 Nuclear pore complex c 99.8 1.3E-17 2.9E-22 137.7 22.5 211 1-213 36-315 (361)
151 KOG1445 Tumor-specific antigen 99.8 2.6E-19 5.6E-24 160.6 13.1 158 13-170 622-799 (1012)
152 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-18 2.5E-23 154.6 16.1 193 13-210 288-555 (577)
153 KOG4328 WD40 protein [Function 99.8 1.2E-18 2.6E-23 150.8 15.5 216 2-218 212-452 (498)
154 KOG2106 Uncharacterized conser 99.8 2.9E-17 6.4E-22 143.9 22.9 206 1-214 268-519 (626)
155 KOG1587 Cytoplasmic dynein int 99.8 9.4E-18 2E-22 155.2 20.7 210 2-214 224-514 (555)
156 KOG1524 WD40 repeat-containing 99.8 1.8E-18 3.9E-23 152.5 15.0 190 4-212 89-282 (737)
157 KOG1009 Chromatin assembly com 99.8 9.1E-18 2E-22 143.4 18.6 121 12-132 58-195 (434)
158 KOG2048 WD40 repeat protein [G 99.8 5.9E-17 1.3E-21 146.6 24.6 194 19-214 26-231 (691)
159 KOG4328 WD40 protein [Function 99.8 5.8E-18 1.2E-22 146.6 17.4 200 12-215 179-398 (498)
160 PRK01742 tolB translocation pr 99.8 2E-17 4.2E-22 153.3 21.6 202 2-215 186-400 (429)
161 KOG0321 WD40 repeat-containing 99.8 5.1E-18 1.1E-22 152.4 16.8 211 1-215 123-390 (720)
162 KOG0307 Vesicle coat complex C 99.8 6.5E-19 1.4E-23 167.8 10.1 210 2-216 92-327 (1049)
163 KOG1539 WD repeat protein [Gen 99.8 6.4E-16 1.4E-20 143.0 28.5 219 2-227 97-329 (910)
164 KOG1007 WD repeat protein TSSC 99.8 1.3E-17 2.8E-22 136.7 15.1 197 13-215 57-288 (370)
165 KOG0771 Prolactin regulatory e 99.8 8.2E-18 1.8E-22 144.5 13.8 188 22-214 148-352 (398)
166 KOG1063 RNA polymerase II elon 99.8 1.2E-17 2.7E-22 151.3 15.0 185 12-197 518-734 (764)
167 KOG1538 Uncharacterized conser 99.8 1.2E-16 2.7E-21 144.4 21.2 203 2-212 35-289 (1081)
168 KOG2919 Guanine nucleotide-bin 99.8 4.5E-17 9.8E-22 135.5 15.7 188 28-217 121-328 (406)
169 KOG0290 Conserved WD40 repeat- 99.8 6.2E-17 1.4E-21 132.8 16.1 195 17-228 94-318 (364)
170 KOG1523 Actin-related protein 99.7 2.7E-16 5.8E-21 130.8 19.1 205 15-219 6-239 (361)
171 KOG0303 Actin-binding protein 99.7 2.6E-17 5.7E-22 140.2 13.4 147 55-205 76-235 (472)
172 KOG1310 WD40 repeat protein [G 99.7 4.7E-17 1E-21 144.0 15.1 203 13-215 44-302 (758)
173 COG2319 FOG: WD40 repeat [Gene 99.7 3.2E-15 7E-20 137.2 27.9 209 1-213 88-311 (466)
174 KOG0644 Uncharacterized conser 99.7 3.9E-18 8.4E-23 157.4 8.1 200 14-223 185-475 (1113)
175 KOG1188 WD40 repeat protein [G 99.7 1.4E-16 2.9E-21 133.5 16.5 176 31-208 41-235 (376)
176 KOG1009 Chromatin assembly com 99.7 4.4E-17 9.6E-22 139.3 13.6 189 17-205 12-249 (434)
177 KOG2321 WD40 repeat protein [G 99.7 4.4E-17 9.6E-22 144.9 13.8 188 22-215 137-342 (703)
178 KOG0290 Conserved WD40 repeat- 99.7 5E-16 1.1E-20 127.6 18.5 189 18-208 149-358 (364)
179 COG2319 FOG: WD40 repeat [Gene 99.7 5.9E-15 1.3E-19 135.5 27.7 208 1-214 135-357 (466)
180 PRK03629 tolB translocation pr 99.7 2.3E-15 4.9E-20 139.3 24.7 200 2-210 181-397 (429)
181 KOG1034 Transcriptional repres 99.7 9.5E-17 2.1E-21 133.8 13.4 167 2-168 117-382 (385)
182 PRK02889 tolB translocation pr 99.7 1.7E-15 3.7E-20 140.2 23.1 198 2-208 178-392 (427)
183 PRK05137 tolB translocation pr 99.7 2.6E-15 5.6E-20 139.6 23.8 197 2-207 184-397 (435)
184 PRK04922 tolB translocation pr 99.7 2.4E-15 5.1E-20 139.7 23.3 197 2-207 186-399 (433)
185 KOG2096 WD40 repeat protein [G 99.7 3.9E-16 8.5E-21 129.7 15.9 165 1-167 210-400 (420)
186 KOG1538 Uncharacterized conser 99.7 1.1E-15 2.4E-20 138.3 19.6 187 20-214 14-250 (1081)
187 KOG1007 WD repeat protein TSSC 99.7 7E-16 1.5E-20 126.6 16.6 185 18-208 123-353 (370)
188 KOG1445 Tumor-specific antigen 99.7 2.2E-16 4.8E-21 142.0 14.3 179 26-208 587-786 (1012)
189 KOG2110 Uncharacterized conser 99.7 3.3E-15 7.2E-20 126.6 20.5 165 3-170 71-249 (391)
190 KOG2110 Uncharacterized conser 99.7 2.1E-15 4.7E-20 127.7 19.0 134 1-134 107-250 (391)
191 KOG2394 WD40 protein DMR-N9 [G 99.7 5.5E-16 1.2E-20 137.0 15.8 203 21-228 171-452 (636)
192 PF08149 BING4CT: BING4CT (NUC 99.7 3.8E-17 8.2E-22 107.3 6.3 79 178-257 2-80 (80)
193 KOG1063 RNA polymerase II elon 99.7 3E-15 6.4E-20 136.0 20.5 211 2-216 36-391 (764)
194 KOG0649 WD40 repeat protein [G 99.7 7.1E-15 1.5E-19 118.0 19.9 177 11-197 54-257 (325)
195 KOG2139 WD40 repeat protein [G 99.7 5.1E-15 1.1E-19 125.1 19.5 203 1-208 121-367 (445)
196 KOG0649 WD40 repeat protein [G 99.7 6.7E-15 1.5E-19 118.2 18.1 145 21-168 117-273 (325)
197 PRK11028 6-phosphogluconolacto 99.7 1.3E-13 2.9E-18 123.7 28.4 213 1-215 13-257 (330)
198 PRK11028 6-phosphogluconolacto 99.7 6.7E-14 1.5E-18 125.6 25.5 210 2-215 59-303 (330)
199 PF08662 eIF2A: Eukaryotic tra 99.7 1.8E-14 4E-19 118.2 19.6 144 22-168 9-178 (194)
200 KOG2111 Uncharacterized conser 99.7 1.5E-13 3.2E-18 114.6 24.8 167 2-171 77-258 (346)
201 KOG1523 Actin-related protein 99.7 1.1E-14 2.3E-19 121.4 17.6 203 2-208 34-271 (361)
202 KOG4227 WD40 repeat protein [G 99.7 4.9E-15 1.1E-19 126.4 15.8 216 13-228 50-322 (609)
203 TIGR02800 propeller_TolB tol-p 99.6 8.1E-14 1.8E-18 129.3 23.8 198 2-208 172-386 (417)
204 PF08662 eIF2A: Eukaryotic tra 99.6 2.3E-14 4.9E-19 117.7 17.6 152 64-229 9-180 (194)
205 KOG2139 WD40 repeat protein [G 99.6 4E-14 8.6E-19 119.8 19.1 180 21-208 101-302 (445)
206 KOG0322 G-protein beta subunit 99.6 1.1E-14 2.3E-19 118.3 15.0 207 2-214 37-321 (323)
207 PRK01742 tolB translocation pr 99.6 1.3E-14 2.7E-19 134.6 17.8 186 2-197 230-426 (429)
208 KOG1272 WD40-repeat-containing 99.6 4.7E-16 1E-20 135.2 7.5 202 2-214 153-360 (545)
209 KOG1517 Guanine nucleotide bin 99.6 3.6E-14 7.8E-19 134.6 20.4 219 2-222 1088-1339(1387)
210 KOG0642 Cell-cycle nuclear pro 99.6 9.2E-15 2E-19 130.1 14.8 161 10-171 335-563 (577)
211 KOG1240 Protein kinase contain 99.6 3.8E-14 8.3E-19 136.3 19.9 219 5-227 1034-1284(1431)
212 KOG1963 WD40 repeat protein [G 99.6 1.3E-13 2.9E-18 128.7 22.0 222 1-230 38-336 (792)
213 KOG1517 Guanine nucleotide bin 99.6 7.4E-14 1.6E-18 132.6 18.7 192 22-215 1169-1380(1387)
214 KOG2394 WD40 protein DMR-N9 [G 99.6 5.1E-15 1.1E-19 131.0 10.2 92 21-112 293-384 (636)
215 PRK00178 tolB translocation pr 99.6 5.9E-13 1.3E-17 123.9 24.4 197 2-207 181-394 (430)
216 KOG1963 WD40 repeat protein [G 99.6 2.2E-13 4.8E-18 127.3 19.5 210 17-229 203-439 (792)
217 KOG3881 Uncharacterized conser 99.6 4.7E-13 1E-17 114.4 19.8 182 31-217 116-321 (412)
218 KOG0771 Prolactin regulatory e 99.6 3.4E-14 7.5E-19 122.4 12.6 148 64-217 148-312 (398)
219 KOG1524 WD40 repeat-containing 99.6 2.3E-14 5E-19 126.9 11.8 167 31-207 76-247 (737)
220 KOG3881 Uncharacterized conser 99.6 3E-13 6.5E-18 115.6 18.0 182 11-198 141-343 (412)
221 KOG0650 WD40 repeat nucleolar 99.6 7.4E-14 1.6E-18 125.2 14.7 199 14-213 517-732 (733)
222 PRK04792 tolB translocation pr 99.6 1.4E-12 3E-17 121.4 23.7 198 2-208 200-414 (448)
223 PRK03629 tolB translocation pr 99.5 1.3E-12 2.8E-17 121.0 22.0 187 2-197 225-428 (429)
224 KOG0322 G-protein beta subunit 99.5 8.7E-14 1.9E-18 113.1 10.3 138 31-168 166-322 (323)
225 PRK04922 tolB translocation pr 99.5 2.8E-12 6E-17 119.2 20.8 186 2-196 230-432 (433)
226 PRK01029 tolB translocation pr 99.5 1E-11 2.2E-16 114.7 24.3 198 2-206 167-390 (428)
227 KOG0644 Uncharacterized conser 99.5 1.7E-14 3.8E-19 133.6 5.8 164 2-169 214-468 (1113)
228 KOG1587 Cytoplasmic dynein int 99.5 3.4E-12 7.4E-17 118.6 20.8 184 40-228 222-472 (555)
229 KOG1310 WD40 repeat protein [G 99.5 1.4E-13 3E-18 122.4 11.0 160 54-214 44-229 (758)
230 PRK02889 tolB translocation pr 99.5 2.6E-12 5.5E-17 119.1 19.2 187 2-197 222-425 (427)
231 KOG4497 Uncharacterized conser 99.5 4.7E-13 1E-17 112.1 12.6 184 23-214 13-238 (447)
232 KOG4227 WD40 repeat protein [G 99.5 1.4E-12 3E-17 111.6 14.7 157 55-213 51-222 (609)
233 PRK04043 tolB translocation pr 99.5 5.6E-11 1.2E-15 109.1 25.8 198 2-208 171-389 (419)
234 KOG2111 Uncharacterized conser 99.5 1.1E-11 2.5E-16 103.5 19.1 133 2-134 115-258 (346)
235 KOG4497 Uncharacterized conser 99.5 1.8E-11 4E-16 102.7 20.4 104 105-214 321-430 (447)
236 KOG4547 WD40 repeat-containing 99.5 1.1E-11 2.5E-16 111.4 20.2 172 28-204 3-207 (541)
237 KOG2321 WD40 repeat protein [G 99.5 5.8E-12 1.2E-16 112.8 17.9 176 18-197 50-282 (703)
238 PF02239 Cytochrom_D1: Cytochr 99.4 3.6E-11 7.8E-16 108.4 22.8 169 31-204 6-189 (369)
239 PF02239 Cytochrom_D1: Cytochr 99.4 9.7E-11 2.1E-15 105.7 24.1 169 2-171 18-204 (369)
240 PRK05137 tolB translocation pr 99.4 3.8E-11 8.3E-16 111.7 21.9 160 40-207 182-354 (435)
241 KOG2315 Predicted translation 99.4 1.2E-10 2.6E-15 104.2 22.9 210 2-227 148-389 (566)
242 PRK01029 tolB translocation pr 99.4 4.4E-11 9.6E-16 110.5 20.9 191 2-198 213-426 (428)
243 TIGR02658 TTQ_MADH_Hv methylam 99.4 9E-10 2E-14 97.4 27.7 210 1-218 28-332 (352)
244 KOG0280 Uncharacterized conser 99.4 3.2E-11 6.9E-16 99.8 15.8 183 22-205 125-320 (339)
245 KOG0974 WD-repeat protein WDR6 99.4 2.6E-11 5.6E-16 115.6 16.8 176 30-210 99-282 (967)
246 KOG0974 WD-repeat protein WDR6 99.4 2E-11 4.3E-16 116.4 15.8 166 2-170 111-289 (967)
247 KOG1334 WD40 repeat protein [G 99.4 5.9E-12 1.3E-16 110.7 11.4 208 13-220 136-370 (559)
248 PRK00178 tolB translocation pr 99.3 1.7E-10 3.6E-15 107.5 21.2 187 2-197 225-428 (430)
249 KOG2314 Translation initiation 99.3 3.2E-10 6.9E-15 101.5 20.9 215 2-228 284-573 (698)
250 PF10282 Lactonase: Lactonase, 99.3 6.4E-09 1.4E-13 93.8 29.1 196 19-215 87-321 (345)
251 PRK04792 tolB translocation pr 99.3 2.9E-10 6.2E-15 105.9 20.8 187 2-197 244-447 (448)
252 TIGR02800 propeller_TolB tol-p 99.3 3.4E-10 7.3E-15 105.1 21.3 163 2-167 216-395 (417)
253 KOG1334 WD40 repeat protein [G 99.3 5.6E-11 1.2E-15 104.6 13.8 211 2-214 166-422 (559)
254 KOG1240 Protein kinase contain 99.3 9.8E-10 2.1E-14 106.7 21.7 171 1-171 1072-1275(1431)
255 COG2706 3-carboxymuconate cycl 99.3 1.6E-08 3.5E-13 86.6 26.0 205 2-206 18-263 (346)
256 KOG4547 WD40 repeat-containing 99.3 2.6E-09 5.7E-14 96.4 22.1 168 1-170 16-221 (541)
257 PF07433 DUF1513: Protein of u 99.3 1.1E-08 2.3E-13 87.6 24.7 193 1-203 29-273 (305)
258 KOG2695 WD40 repeat protein [G 99.2 2.1E-11 4.7E-16 102.9 8.0 167 25-196 218-402 (425)
259 PF10282 Lactonase: Lactonase, 99.2 2.7E-08 5.8E-13 89.7 28.1 215 7-221 23-280 (345)
260 KOG1275 PAB-dependent poly(A) 99.2 4.9E-10 1.1E-14 105.7 16.9 189 30-225 147-350 (1118)
261 KOG0280 Uncharacterized conser 99.2 2.4E-09 5.2E-14 88.9 19.0 188 17-209 68-278 (339)
262 PLN02919 haloacid dehalogenase 99.2 1.9E-08 4.1E-13 102.4 29.4 214 2-219 592-891 (1057)
263 KOG1354 Serine/threonine prote 99.2 1.7E-09 3.7E-14 91.6 16.2 192 22-214 29-357 (433)
264 COG2706 3-carboxymuconate cycl 99.2 4.3E-08 9.4E-13 84.0 24.3 184 22-208 92-312 (346)
265 KOG1064 RAVE (regulator of V-A 99.2 1.6E-10 3.5E-15 115.6 10.9 160 2-171 2232-2400(2439)
266 KOG1064 RAVE (regulator of V-A 99.1 4.9E-10 1.1E-14 112.3 12.3 150 19-171 2209-2368(2439)
267 PRK04043 tolB translocation pr 99.1 2.9E-08 6.2E-13 91.4 21.7 162 2-168 215-399 (419)
268 KOG2315 Predicted translation 99.1 1.1E-08 2.3E-13 92.0 17.9 167 22-199 221-413 (566)
269 KOG2314 Translation initiation 99.1 2.2E-08 4.7E-13 90.0 19.3 185 18-206 249-512 (698)
270 PF08450 SGL: SMP-30/Gluconola 99.1 6.5E-07 1.4E-11 76.8 27.2 191 2-203 24-242 (246)
271 PLN02919 haloacid dehalogenase 99.1 6.6E-08 1.4E-12 98.5 24.2 150 21-171 685-890 (1057)
272 COG5354 Uncharacterized protei 99.1 5.7E-08 1.2E-12 86.6 20.5 194 20-227 175-394 (561)
273 KOG4532 WD40-like repeat conta 99.0 8.3E-08 1.8E-12 78.9 19.4 176 22-199 71-263 (344)
274 KOG2066 Vacuolar assembly/sort 99.0 5E-08 1.1E-12 91.4 19.9 135 29-169 82-233 (846)
275 KOG3914 WD repeat protein WDR4 99.0 5E-09 1.1E-13 90.6 12.2 149 22-172 66-226 (390)
276 KOG4190 Uncharacterized conser 99.0 2.3E-09 5E-14 96.2 9.4 159 11-171 727-908 (1034)
277 KOG2041 WD40 repeat protein [G 99.0 1.3E-08 2.8E-13 94.0 13.6 196 17-213 13-244 (1189)
278 KOG3914 WD repeat protein WDR4 99.0 8.5E-09 1.8E-13 89.1 11.6 124 15-140 104-231 (390)
279 KOG0309 Conserved WD40 repeat- 98.9 4.6E-09 1E-13 97.2 9.6 195 13-213 19-229 (1081)
280 COG4946 Uncharacterized protei 98.9 3.5E-07 7.6E-12 81.0 20.5 138 15-153 356-500 (668)
281 PF13360 PQQ_2: PQQ-like domai 98.9 6.4E-07 1.4E-11 76.4 22.2 208 1-218 4-232 (238)
282 PF04762 IKI3: IKI3 family; I 98.9 3.9E-07 8.4E-12 91.4 23.6 187 21-215 78-332 (928)
283 KOG4190 Uncharacterized conser 98.9 3.7E-09 8.1E-14 94.9 8.3 170 53-227 728-916 (1034)
284 COG4946 Uncharacterized protei 98.9 3.2E-07 6.9E-12 81.3 19.9 170 26-205 327-507 (668)
285 KOG1912 WD40 repeat protein [G 98.9 1.3E-07 2.7E-12 88.4 18.1 218 2-222 37-310 (1062)
286 KOG0309 Conserved WD40 repeat- 98.9 5.3E-09 1.1E-13 96.8 8.9 213 10-228 105-339 (1081)
287 TIGR02658 TTQ_MADH_Hv methylam 98.9 1.9E-06 4.1E-11 76.6 24.3 172 40-215 27-222 (352)
288 KOG2695 WD40 repeat protein [G 98.9 8.6E-09 1.9E-13 87.5 8.8 124 17-141 251-385 (425)
289 KOG4532 WD40-like repeat conta 98.9 2.1E-07 4.6E-12 76.6 16.4 141 32-172 130-285 (344)
290 COG5354 Uncharacterized protei 98.9 3.7E-07 8.1E-12 81.5 18.8 193 2-205 55-293 (561)
291 PF00400 WD40: WD domain, G-be 98.9 9.9E-09 2.1E-13 60.6 6.4 39 50-88 1-39 (39)
292 KOG4714 Nucleoporin [Nuclear s 98.9 5.4E-08 1.2E-12 79.7 12.5 158 11-169 81-254 (319)
293 PF00400 WD40: WD domain, G-be 98.9 8.1E-09 1.8E-13 60.9 5.9 38 93-130 2-39 (39)
294 KOG1354 Serine/threonine prote 98.9 4.1E-08 8.8E-13 83.4 12.1 153 17-171 162-361 (433)
295 TIGR03300 assembly_YfgL outer 98.9 9.9E-07 2.1E-11 80.8 22.3 206 2-217 117-339 (377)
296 PF15492 Nbas_N: Neuroblastoma 98.8 4.6E-06 9.9E-11 69.8 23.0 190 24-215 3-258 (282)
297 KOG4714 Nucleoporin [Nuclear s 98.8 1.5E-08 3.3E-13 82.8 7.9 112 22-133 136-255 (319)
298 KOG1409 Uncharacterized conser 98.8 1.9E-07 4.1E-12 79.4 14.4 170 1-170 47-271 (404)
299 PF04762 IKI3: IKI3 family; I 98.8 1.5E-06 3.2E-11 87.4 23.1 204 2-216 239-456 (928)
300 TIGR03300 assembly_YfgL outer 98.8 3.5E-06 7.5E-11 77.2 23.7 207 2-227 77-305 (377)
301 KOG1409 Uncharacterized conser 98.8 2.1E-07 4.4E-12 79.2 14.0 206 12-221 17-232 (404)
302 COG0823 TolB Periplasmic compo 98.8 5.6E-07 1.2E-11 82.5 18.1 210 4-221 177-404 (425)
303 PF08450 SGL: SMP-30/Gluconola 98.8 1.1E-05 2.3E-10 69.3 25.2 188 22-216 3-213 (246)
304 KOG1832 HIV-1 Vpr-binding prot 98.8 8.8E-09 1.9E-13 97.3 5.3 138 12-153 1094-1242(1516)
305 PF11768 DUF3312: Protein of u 98.7 1.1E-06 2.4E-11 80.3 18.1 121 12-135 199-332 (545)
306 KOG2041 WD40 repeat protein [G 98.7 6.3E-08 1.4E-12 89.6 10.0 189 13-208 65-280 (1189)
307 KOG1912 WD40 repeat protein [G 98.7 2.5E-07 5.5E-12 86.5 13.9 145 22-168 19-185 (1062)
308 COG5170 CDC55 Serine/threonine 98.7 2.3E-07 5E-12 77.9 11.9 182 21-203 29-297 (460)
309 KOG3617 WD40 and TPR repeat-co 98.7 5.4E-07 1.2E-11 85.2 15.3 224 3-229 44-350 (1416)
310 KOG1275 PAB-dependent poly(A) 98.7 4.2E-07 9.1E-12 86.5 13.7 138 27-167 184-340 (1118)
311 PF15492 Nbas_N: Neuroblastoma 98.7 6.1E-06 1.3E-10 69.0 19.0 149 22-171 47-261 (282)
312 KOG1920 IkappaB kinase complex 98.7 4.6E-06 1E-10 82.0 20.6 191 20-217 70-323 (1265)
313 PF13360 PQQ_2: PQQ-like domai 98.7 1.1E-05 2.4E-10 68.7 21.0 167 2-171 48-232 (238)
314 KOG2114 Vacuolar assembly/sort 98.7 2.6E-06 5.6E-11 80.8 18.0 179 25-208 30-236 (933)
315 PF07433 DUF1513: Protein of u 98.6 5.1E-05 1.1E-09 65.4 23.8 184 22-208 8-238 (305)
316 KOG1645 RING-finger-containing 98.6 1.2E-06 2.6E-11 76.1 12.6 79 13-92 187-268 (463)
317 PF11768 DUF3312: Protein of u 98.6 9.1E-06 2E-10 74.5 18.2 109 63-171 208-331 (545)
318 PRK11138 outer membrane biogen 98.5 2.1E-05 4.5E-10 72.5 21.0 207 2-217 132-354 (394)
319 KOG3617 WD40 and TPR repeat-co 98.5 7.5E-07 1.6E-11 84.2 10.4 113 18-132 14-131 (1416)
320 COG5170 CDC55 Serine/threonine 98.5 2.9E-06 6.3E-11 71.5 12.7 187 21-208 88-359 (460)
321 KOG2066 Vacuolar assembly/sort 98.5 5.1E-06 1.1E-10 78.4 14.8 173 22-208 43-226 (846)
322 KOG1645 RING-finger-containing 98.4 6E-06 1.3E-10 71.9 13.2 158 42-203 175-347 (463)
323 PF04053 Coatomer_WDAD: Coatom 98.4 1.6E-05 3.4E-10 73.4 16.9 187 21-227 35-233 (443)
324 PRK02888 nitrous-oxide reducta 98.4 7.7E-05 1.7E-09 70.2 20.9 161 3-170 218-405 (635)
325 COG0823 TolB Periplasmic compo 98.4 1.1E-05 2.4E-10 74.0 15.2 149 2-153 220-381 (425)
326 KOG1008 Uncharacterized conser 98.4 1.5E-07 3.2E-12 86.3 2.4 194 20-213 58-272 (783)
327 PRK11138 outer membrane biogen 98.4 8.1E-05 1.8E-09 68.6 20.5 200 2-213 172-391 (394)
328 KOG0882 Cyclophilin-related pe 98.3 6.3E-06 1.4E-10 72.8 10.8 201 18-220 8-235 (558)
329 KOG1832 HIV-1 Vpr-binding prot 98.3 7.6E-07 1.6E-11 84.6 5.2 149 52-202 1093-1246(1516)
330 COG3391 Uncharacterized conser 98.3 0.00046 1E-08 63.1 23.0 180 22-207 77-273 (381)
331 KOG3621 WD40 repeat-containing 98.3 6.9E-06 1.5E-10 76.5 10.6 113 21-133 36-155 (726)
332 KOG0882 Cyclophilin-related pe 98.2 5.4E-06 1.2E-10 73.2 8.5 193 12-209 46-299 (558)
333 COG3391 Uncharacterized conser 98.2 0.00097 2.1E-08 61.0 23.7 193 2-198 98-310 (381)
334 PF06977 SdiA-regulated: SdiA- 98.2 0.00062 1.3E-08 57.8 20.4 188 14-204 16-239 (248)
335 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00063 1.4E-08 61.7 21.8 193 2-202 25-296 (353)
336 PF03178 CPSF_A: CPSF A subuni 98.2 0.0012 2.7E-08 58.9 22.8 206 1-215 3-264 (321)
337 KOG2114 Vacuolar assembly/sort 98.1 0.00037 8E-09 66.7 19.1 143 28-170 75-244 (933)
338 PF06977 SdiA-regulated: SdiA- 98.1 0.0011 2.3E-08 56.4 20.2 164 2-166 46-247 (248)
339 PF14583 Pectate_lyase22: Olig 98.1 0.0013 2.9E-08 58.6 21.1 195 7-203 18-254 (386)
340 cd00216 PQQ_DH Dehydrogenases 98.1 0.0013 2.7E-08 62.4 22.6 217 2-218 122-426 (488)
341 KOG1008 Uncharacterized conser 98.1 6.2E-07 1.3E-11 82.4 0.1 152 17-170 100-276 (783)
342 KOG4640 Anaphase-promoting com 98.1 1.7E-05 3.8E-10 73.0 9.0 92 20-112 22-115 (665)
343 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0013 2.8E-08 54.7 18.7 141 24-166 16-162 (354)
344 COG3490 Uncharacterized protei 98.1 0.00067 1.5E-08 57.1 17.2 171 2-172 93-313 (366)
345 COG3386 Gluconolactonase [Carb 98.1 0.0025 5.5E-08 56.0 21.9 163 30-201 77-270 (307)
346 PF00930 DPPIV_N: Dipeptidyl p 98.1 0.00027 5.8E-09 64.1 16.4 93 27-121 1-119 (353)
347 PF05096 Glu_cyclase_2: Glutam 98.1 0.0049 1.1E-07 52.2 22.4 183 12-200 36-244 (264)
348 PF08553 VID27: VID27 cytoplas 98.1 0.00018 3.8E-09 70.2 15.6 129 37-168 501-646 (794)
349 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0027 5.8E-08 58.6 22.8 190 2-202 63-275 (410)
350 KOG4640 Anaphase-promoting com 98.0 3.6E-05 7.7E-10 71.0 9.5 91 61-152 21-116 (665)
351 PRK13616 lipoprotein LpqB; Pro 98.0 0.00096 2.1E-08 64.1 19.5 179 21-210 352-562 (591)
352 PF04053 Coatomer_WDAD: Coatom 98.0 0.00064 1.4E-08 62.9 17.5 135 58-209 30-167 (443)
353 cd00216 PQQ_DH Dehydrogenases 98.0 0.0035 7.5E-08 59.5 22.6 166 2-172 177-427 (488)
354 PRK13616 lipoprotein LpqB; Pro 97.9 0.001 2.2E-08 63.9 18.2 164 39-208 328-517 (591)
355 PRK02888 nitrous-oxide reducta 97.9 0.0015 3.3E-08 61.8 18.6 181 26-214 200-402 (635)
356 smart00320 WD40 WD40 repeats. 97.9 6.6E-05 1.4E-09 42.8 6.1 39 50-88 2-40 (40)
357 KOG1920 IkappaB kinase complex 97.9 0.00032 6.9E-09 69.6 13.7 113 22-135 199-325 (1265)
358 smart00320 WD40 WD40 repeats. 97.8 5.7E-05 1.2E-09 43.1 5.4 38 93-130 3-40 (40)
359 PF06433 Me-amine-dh_H: Methyl 97.8 0.0096 2.1E-07 52.3 20.8 172 40-214 17-211 (342)
360 PF08553 VID27: VID27 cytoplas 97.8 0.0017 3.6E-08 63.7 17.8 130 73-207 494-639 (794)
361 COG3386 Gluconolactonase [Carb 97.8 0.0011 2.4E-08 58.3 14.6 120 2-122 145-275 (307)
362 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0034 7.4E-08 45.5 14.3 100 21-127 2-109 (111)
363 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0044 9.5E-08 51.6 16.5 105 30-134 63-167 (354)
364 KOG2395 Protein involved in va 97.7 0.00075 1.6E-08 61.4 12.7 139 29-169 344-500 (644)
365 PF04841 Vps16_N: Vps16, N-ter 97.7 0.0086 1.9E-07 55.3 20.1 178 22-213 32-243 (410)
366 COG3490 Uncharacterized protei 97.7 0.017 3.7E-07 48.9 19.4 156 3-158 52-243 (366)
367 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0046 9.9E-08 44.9 13.7 96 105-210 2-108 (111)
368 PF02897 Peptidase_S9_N: Proly 97.6 0.052 1.1E-06 50.4 24.7 186 22-213 127-352 (414)
369 PF03178 CPSF_A: CPSF A subuni 97.6 0.015 3.2E-07 52.1 19.8 172 40-216 2-202 (321)
370 PF08596 Lgl_C: Lethal giant l 97.6 0.027 5.8E-07 51.6 21.4 187 21-213 4-287 (395)
371 KOG3621 WD40 repeat-containing 97.6 0.00059 1.3E-08 64.0 10.6 110 104-213 35-151 (726)
372 PF12234 Rav1p_C: RAVE protein 97.6 0.0041 8.9E-08 59.4 15.6 114 54-167 23-154 (631)
373 PF08596 Lgl_C: Lethal giant l 97.5 0.021 4.7E-07 52.2 19.2 197 14-212 81-332 (395)
374 KOG2079 Vacuolar assembly/sort 97.3 0.0035 7.5E-08 61.9 12.5 100 30-131 99-202 (1206)
375 KOG2395 Protein involved in va 97.3 0.0036 7.8E-08 57.2 11.8 127 75-207 349-492 (644)
376 PF00780 CNH: CNH domain; Int 97.3 0.1 2.2E-06 45.4 21.1 140 28-171 5-167 (275)
377 PF10647 Gmad1: Lipoprotein Lp 97.2 0.026 5.7E-07 48.5 15.9 145 62-209 25-188 (253)
378 PF06433 Me-amine-dh_H: Methyl 97.2 0.13 2.8E-06 45.4 23.9 205 2-217 69-321 (342)
379 KOG4441 Proteins containing BT 97.2 0.043 9.3E-07 52.9 17.9 195 22-227 326-552 (571)
380 PHA02713 hypothetical protein; 97.0 0.11 2.3E-06 50.2 19.3 138 29-170 303-489 (557)
381 PF14870 PSII_BNR: Photosynthe 97.0 0.088 1.9E-06 46.2 16.7 140 22-166 148-301 (302)
382 PF00780 CNH: CNH domain; Int 97.0 0.055 1.2E-06 47.1 15.7 134 70-210 5-160 (275)
383 KOG3630 Nuclear pore complex, 97.0 0.0099 2.1E-07 59.2 11.5 181 22-204 45-261 (1405)
384 COG3204 Uncharacterized protei 96.9 0.23 4.9E-06 42.6 17.5 151 57-208 82-255 (316)
385 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0041 8.8E-08 37.7 5.3 34 102-136 11-44 (47)
386 PF05694 SBP56: 56kDa selenium 96.9 0.15 3.3E-06 46.4 17.2 188 30-228 87-342 (461)
387 PF10647 Gmad1: Lipoprotein Lp 96.9 0.25 5.5E-06 42.4 21.1 136 20-158 25-183 (253)
388 PF14870 PSII_BNR: Photosynthe 96.9 0.29 6.2E-06 43.0 24.7 144 58-205 142-294 (302)
389 KOG1916 Nuclear protein, conta 96.9 0.00031 6.7E-09 67.7 0.4 145 22-168 184-373 (1283)
390 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0049 1.1E-07 37.4 5.5 34 60-94 11-44 (47)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.8 0.48 1E-05 45.4 22.3 153 22-174 237-495 (527)
392 PF12234 Rav1p_C: RAVE protein 96.8 0.081 1.8E-06 50.9 15.8 108 22-131 33-155 (631)
393 TIGR02604 Piru_Ver_Nterm putat 96.8 0.3 6.6E-06 44.5 19.1 138 19-159 14-202 (367)
394 KOG2280 Vacuolar assembly/sort 96.7 0.1 2.2E-06 50.1 15.8 163 1-167 65-285 (829)
395 PF05096 Glu_cyclase_2: Glutam 96.7 0.32 6.9E-06 41.5 20.8 152 2-158 70-249 (264)
396 KOG2079 Vacuolar assembly/sort 96.7 0.0047 1E-07 61.0 7.1 70 71-140 98-168 (1206)
397 KOG2444 WD40 repeat protein [G 96.7 0.0065 1.4E-07 49.7 6.8 95 30-132 70-166 (238)
398 PF02897 Peptidase_S9_N: Proly 96.6 0.24 5.1E-06 46.0 18.0 108 63-171 126-262 (414)
399 PHA02713 hypothetical protein; 96.6 0.074 1.6E-06 51.3 14.8 139 29-171 351-535 (557)
400 COG3204 Uncharacterized protei 96.6 0.4 8.7E-06 41.2 19.4 149 19-167 86-261 (316)
401 KOG4499 Ca2+-binding protein R 96.6 0.1 2.2E-06 43.1 13.0 106 15-120 153-272 (310)
402 COG4257 Vgb Streptogramin lyas 96.5 0.42 9.1E-06 40.6 16.6 186 21-213 64-259 (353)
403 PRK10115 protease 2; Provision 96.5 1 2.2E-05 44.8 24.0 187 22-215 130-343 (686)
404 PF15390 DUF4613: Domain of un 96.5 0.16 3.4E-06 47.7 14.9 137 61-208 20-177 (671)
405 TIGR02604 Piru_Ver_Nterm putat 96.4 0.46 9.9E-06 43.4 17.8 140 61-208 14-205 (367)
406 PF15390 DUF4613: Domain of un 96.3 0.39 8.4E-06 45.2 16.6 113 19-132 57-186 (671)
407 KOG4460 Nuclear pore complex, 96.3 0.25 5.5E-06 45.7 15.1 26 63-88 106-131 (741)
408 KOG2377 Uncharacterized conser 96.3 0.33 7.2E-06 44.2 15.5 137 64-206 26-173 (657)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1 2.2E-05 43.2 20.2 168 2-171 81-335 (527)
410 PRK13684 Ycf48-like protein; P 96.3 0.83 1.8E-05 41.1 20.0 140 60-205 172-321 (334)
411 PRK13684 Ycf48-like protein; P 96.2 0.79 1.7E-05 41.2 18.1 142 22-167 176-329 (334)
412 KOG3630 Nuclear pore complex, 96.1 0.044 9.6E-07 54.8 9.9 140 13-153 93-255 (1405)
413 PF05935 Arylsulfotrans: Aryls 96.1 0.38 8.3E-06 45.5 15.8 134 2-140 130-309 (477)
414 COG5167 VID27 Protein involved 95.8 0.21 4.6E-06 46.0 12.3 142 26-169 475-632 (776)
415 KOG4441 Proteins containing BT 95.8 0.21 4.6E-06 48.3 13.1 139 29-171 284-454 (571)
416 PF10168 Nup88: Nuclear pore c 95.7 0.47 1E-05 47.0 15.3 86 62-153 86-194 (717)
417 PHA03098 kelch-like protein; P 95.7 0.84 1.8E-05 44.0 17.0 104 28-135 293-417 (534)
418 KOG1897 Damage-specific DNA bi 95.7 2.7 5.9E-05 42.2 21.2 216 2-220 752-1008(1096)
419 PHA03098 kelch-like protein; P 95.6 0.93 2E-05 43.7 16.9 103 29-135 342-467 (534)
420 PF05694 SBP56: 56kDa selenium 95.6 1.9 4E-05 39.6 19.3 153 22-174 133-347 (461)
421 PF14269 Arylsulfotran_2: Aryl 95.5 1.3 2.8E-05 39.1 15.8 131 2-132 27-220 (299)
422 TIGR03074 PQQ_membr_DH membran 95.5 3.2 7E-05 41.6 21.9 141 30-171 260-479 (764)
423 KOG2444 WD40 repeat protein [G 95.4 0.023 5.1E-07 46.6 4.1 69 22-90 106-177 (238)
424 PLN00033 photosystem II stabil 95.3 2.2 4.7E-05 39.3 17.3 137 24-166 244-396 (398)
425 PF10313 DUF2415: Uncharacteri 95.3 0.096 2.1E-06 30.8 5.4 31 103-133 1-34 (43)
426 PHA02790 Kelch-like protein; P 95.2 0.77 1.7E-05 43.6 14.7 136 29-171 271-425 (480)
427 PF10168 Nup88: Nuclear pore c 95.2 3.7 8E-05 40.9 22.1 72 21-93 87-182 (717)
428 TIGR03074 PQQ_membr_DH membran 95.2 0.68 1.5E-05 46.3 14.5 110 30-140 194-352 (764)
429 PF14781 BBS2_N: Ciliary BBSom 95.1 1 2.2E-05 34.0 12.1 100 66-167 4-123 (136)
430 COG3823 Glutamine cyclotransfe 95.1 1.5 3.3E-05 35.8 14.5 111 22-136 49-162 (262)
431 PF10313 DUF2415: Uncharacteri 95.0 0.11 2.3E-06 30.6 5.1 32 61-92 1-35 (43)
432 COG4257 Vgb Streptogramin lyas 94.9 1.9 4.1E-05 36.8 14.0 97 61-158 62-166 (353)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 94.7 0.55 1.2E-05 43.2 11.6 89 12-100 300-408 (415)
434 KOG4499 Ca2+-binding protein R 94.6 2.3 5E-05 35.5 17.7 129 61-196 109-263 (310)
435 PF14583 Pectate_lyase22: Olig 94.5 3.5 7.7E-05 37.3 21.3 198 2-207 62-303 (386)
436 PF07995 GSDH: Glucose / Sorbo 94.5 1.4 2.9E-05 39.6 13.6 101 20-122 3-133 (331)
437 PF14761 HPS3_N: Hermansky-Pud 94.5 2.3 5E-05 35.0 15.6 111 20-134 19-165 (215)
438 KOG2280 Vacuolar assembly/sort 94.3 4.4 9.5E-05 39.6 16.6 164 40-212 64-242 (829)
439 PHA02790 Kelch-like protein; P 94.1 3.8 8.3E-05 38.9 16.3 101 28-135 317-426 (480)
440 PF07569 Hira: TUP1-like enhan 94.0 0.46 9.9E-06 39.8 8.7 59 110-168 18-94 (219)
441 KOG2247 WD40 repeat-containing 93.9 0.0052 1.1E-07 55.7 -3.1 130 22-153 38-171 (615)
442 PF14655 RAB3GAP2_N: Rab3 GTPa 93.9 1 2.2E-05 41.5 11.4 46 59-104 306-351 (415)
443 PF07569 Hira: TUP1-like enhan 93.7 0.69 1.5E-05 38.7 9.4 29 26-54 18-46 (219)
444 PLN00033 photosystem II stabil 93.7 5.7 0.00012 36.6 22.1 138 63-205 241-389 (398)
445 PF12657 TFIIIC_delta: Transcr 93.6 0.45 9.7E-06 38.2 7.8 28 142-169 86-121 (173)
446 PF03022 MRJP: Major royal jel 93.6 4.7 0.0001 35.3 19.1 159 40-200 34-249 (287)
447 KOG1916 Nuclear protein, conta 93.5 0.073 1.6E-06 52.1 3.6 92 39-131 152-264 (1283)
448 PF13449 Phytase-like: Esteras 93.4 5.5 0.00012 35.7 16.6 145 60-205 19-233 (326)
449 COG5167 VID27 Protein involved 93.4 1.7 3.8E-05 40.3 11.7 123 7-133 498-633 (776)
450 KOG1898 Splicing factor 3b, su 93.4 9.5 0.00021 38.9 17.4 167 41-213 854-1045(1205)
451 PF08728 CRT10: CRT10; InterP 93.1 9.3 0.0002 37.7 16.9 137 30-168 49-245 (717)
452 KOG4460 Nuclear pore complex, 93.1 2 4.3E-05 40.1 11.7 24 23-46 108-131 (741)
453 KOG1897 Damage-specific DNA bi 93.1 11 0.00024 38.1 20.3 152 14-166 483-656 (1096)
454 PF05935 Arylsulfotrans: Aryls 93.0 5.3 0.00011 37.9 15.2 137 30-171 115-303 (477)
455 PF12657 TFIIIC_delta: Transcr 93.0 0.79 1.7E-05 36.8 8.4 31 103-133 86-122 (173)
456 PF08728 CRT10: CRT10; InterP 92.9 1.7 3.7E-05 42.6 11.7 102 29-131 113-245 (717)
457 TIGR03606 non_repeat_PQQ dehyd 92.8 8.4 0.00018 36.1 19.5 60 55-114 24-90 (454)
458 TIGR03606 non_repeat_PQQ dehyd 92.4 9.7 0.00021 35.7 16.6 110 12-123 22-166 (454)
459 COG1520 FOG: WD40-like repeat 92.4 6.1 0.00013 36.1 14.4 109 29-140 68-179 (370)
460 PF07250 Glyoxal_oxid_N: Glyox 92.3 4.4 9.4E-05 34.4 12.1 136 3-141 49-206 (243)
461 PF10214 Rrn6: RNA polymerase 92.0 15 0.00033 37.2 18.1 108 61-170 146-277 (765)
462 KOG2247 WD40 repeat-containing 92.0 0.017 3.7E-07 52.5 -2.6 118 4-123 60-179 (615)
463 TIGR02276 beta_rpt_yvtn 40-res 91.7 1.4 3.1E-05 25.4 6.5 40 28-68 1-41 (42)
464 KOG3616 Selective LIM binding 91.7 0.53 1.2E-05 45.5 6.6 64 104-167 16-81 (1636)
465 PF11715 Nup160: Nucleoporin N 91.7 0.82 1.8E-05 44.2 8.2 71 70-140 156-256 (547)
466 KOG2377 Uncharacterized conser 91.5 11 0.00024 34.8 14.2 144 7-153 4-165 (657)
467 TIGR02276 beta_rpt_yvtn 40-res 91.5 1.3 2.8E-05 25.6 6.1 38 112-149 1-41 (42)
468 TIGR03118 PEPCTERM_chp_1 conse 91.4 9.2 0.0002 33.4 15.9 108 62-169 24-170 (336)
469 PF13449 Phytase-like: Esteras 91.4 10 0.00022 33.9 17.2 136 21-157 22-231 (326)
470 PF12768 Rax2: Cortical protei 91.1 4.7 0.0001 35.1 11.4 99 40-139 16-130 (281)
471 KOG1900 Nuclear pore complex, 90.1 3.2 7E-05 43.0 10.7 129 2-133 101-273 (1311)
472 PF07995 GSDH: Glucose / Sorbo 90.0 7.5 0.00016 34.9 12.3 50 62-113 3-59 (331)
473 PF14727 PHTB1_N: PTHB1 N-term 89.9 16 0.00035 33.8 17.2 130 73-210 38-198 (418)
474 PF14781 BBS2_N: Ciliary BBSom 89.8 7.3 0.00016 29.5 13.2 113 24-139 4-132 (136)
475 PRK13614 lipoprotein LpqB; Pro 89.6 21 0.00046 34.6 16.5 142 62-206 344-505 (573)
476 COG5290 IkappaB kinase complex 89.4 10 0.00022 37.6 12.7 90 106-200 250-350 (1243)
477 PF10214 Rrn6: RNA polymerase 89.1 28 0.0006 35.4 19.9 136 58-197 77-257 (765)
478 PRK13615 lipoprotein LpqB; Pro 88.9 23 0.00051 34.2 15.4 138 64-205 337-488 (557)
479 PRK10115 protease 2; Provision 88.9 27 0.00059 34.9 23.6 145 22-168 175-345 (686)
480 COG4590 ABC-type uncharacteriz 88.3 3.9 8.5E-05 37.6 8.8 149 22-171 224-388 (733)
481 PF11715 Nup160: Nucleoporin N 88.1 3.5 7.6E-05 39.9 9.4 72 29-100 157-258 (547)
482 COG3823 Glutamine cyclotransfe 87.9 14 0.0003 30.5 12.4 147 2-153 70-240 (262)
483 TIGR03032 conserved hypothetic 87.7 16 0.00036 32.1 12.0 82 29-113 212-315 (335)
484 PF14727 PHTB1_N: PTHB1 N-term 86.1 29 0.00063 32.2 23.5 181 30-219 145-363 (418)
485 KOG1900 Nuclear pore complex, 86.0 41 0.00088 35.5 15.3 144 22-170 82-273 (1311)
486 TIGR03118 PEPCTERM_chp_1 conse 86.0 23 0.0005 31.1 20.7 112 21-132 25-170 (336)
487 PF07676 PD40: WD40-like Beta 85.7 3.8 8.3E-05 23.3 5.2 29 101-129 7-38 (39)
488 PF02333 Phytase: Phytase; In 85.2 30 0.00064 31.6 20.9 165 2-169 80-290 (381)
489 PF03088 Str_synth: Strictosid 84.8 8.3 0.00018 27.0 7.3 43 78-121 33-75 (89)
490 PF14269 Arylsulfotran_2: Aryl 84.7 28 0.0006 30.8 14.9 68 22-89 147-219 (299)
491 COG5276 Uncharacterized conser 84.3 27 0.00059 30.4 21.9 139 22-168 90-240 (370)
492 PF14761 HPS3_N: Hermansky-Pud 83.9 23 0.00051 29.3 11.1 97 73-170 29-164 (215)
493 PF07676 PD40: WD40-like Beta 83.8 5.1 0.00011 22.7 5.1 32 56-87 4-38 (39)
494 KOG1983 Tomosyn and related SN 83.6 26 0.00057 36.6 13.3 28 22-49 39-66 (993)
495 PRK13615 lipoprotein LpqB; Pro 83.2 40 0.00087 32.6 13.5 96 106-204 337-434 (557)
496 KOG1898 Splicing factor 3b, su 82.9 62 0.0013 33.5 17.1 161 2-167 855-1046(1205)
497 smart00564 PQQ beta-propeller 82.8 3.8 8.1E-05 22.1 4.1 25 32-56 8-32 (33)
498 KOG3522 Predicted guanine nucl 82.8 6.4 0.00014 39.0 8.0 132 31-170 548-698 (925)
499 PRK13613 lipoprotein LpqB; Pro 82.4 52 0.0011 32.3 14.8 180 39-221 334-541 (599)
500 PF02333 Phytase: Phytase; In 82.0 41 0.00089 30.7 21.3 145 22-169 57-237 (381)
No 1
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-53 Score=366.19 Aligned_cols=338 Identities=50% Similarity=0.834 Sum_probs=293.8
Q ss_pred CeEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 1 YPYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
|+||||..|.++++++.|..+..+.|.|.+.+|++++..|.+.+.|+++|+.+..+....+.+..|+.+|.+..+.+|..
T Consensus 192 y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 192 YVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred eEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEE
Q 041916 81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVG 158 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~ 158 (359)
+|+|.+|.+++.+++..+.+|.++|.+|+++++|+|++|+|.|..++|||+|+...++++ +.+...+++|..|++++|
T Consensus 272 nGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~ 351 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALS 351 (545)
T ss_pred CceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeee
Confidence 999999999999999999999999999999999999999999999999999998877776 457799999999999999
Q ss_pred cCCcEEEEcCCCC--CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCccChhhh
Q 041916 159 TGSFVQILGDFSG--SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQR 236 (359)
Q Consensus 159 ~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~~~~~~ 236 (359)
.+..+.||..... .....+|..|.. +.+|.++.|+|..++|.+|+..|+.+++++|+++++++.|+.+||++.+|+
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~--~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~nPfetrKQR 429 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRC--GGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDNPFETRKQR 429 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhcc--CcccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccCcchhhhHH
Confidence 9999999974332 356678888874 448999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhhcCCCCceeeCCCCCeeeecccccCCcchHHHHHHHHHHHHhhcccccccCCCCCCchhhHHHhhhhhhhc
Q 041916 237 REKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQEREAEMEAAVEAVKGFVWKNKTKGRNKPSKKAKKKQELVAK 316 (359)
Q Consensus 237 ~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~k~~~~k~~~~~~ 316 (359)
++.+|+++|+++||++|++||+.|+.++....+.++++.+. ............++.|++||++..| .+++++|++
T Consensus 430 qE~EVr~LLeKippElIsLdp~~i~~vd~~~~~~~k~e~~~---~~~~~~~~~~~~pr~K~Kgr~s~~k--~k~~knvvd 504 (545)
T KOG1272|consen 430 QEKEVRSLLEKIPPELISLDPRVIGIVDEPSLEEKKDEIER---LFEEKPPEAGALPRHKTKGRNSGAK--RKKKKNVVD 504 (545)
T ss_pred hHHHHHHHHhhCChHhEEechhhccccCcccchhhHHHHHH---HhcccCcccccCchhhhccCCchHH--HHHHHHHHH
Confidence 99999999999999999999999999998877666333221 1122233344567788999998887 444457777
Q ss_pred ccchhHHHHHH-hhhcc-----------CcCCccccccccc
Q 041916 317 AKRPFLDQQLK-GEQSL-----------NTNIPQALLDFTC 345 (359)
Q Consensus 317 ~~~~~~~~~~~-~~~~~-----------~~~~~~~l~~~~~ 345 (359)
++|.++++.++ +++++ ....+.+|+||.+
T Consensus 505 ~~r~~ve~~le~~k~~q~~~~~~~~~~ea~k~~~aLdRf~~ 545 (545)
T KOG1272|consen 505 DARLFVEQSLEKEKRKQAVKKEQGVKDEAAKKPSALDRFKR 545 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHhhcC
Confidence 77777777554 22211 2344899999964
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=270.09 Aligned_cols=227 Identities=20% Similarity=0.271 Sum_probs=198.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+.||+ .++..+.+|.+|..- .++.|+|. +..||||+.||++++|++.+..++..+.+|...|..++|+|+|.+|++
T Consensus 199 ~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~T 278 (459)
T KOG0272|consen 199 VKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGT 278 (459)
T ss_pred eeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeee
Confidence 68999 888999999999986 99999996 568999999999999999998999999999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc-
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG- 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g- 153 (359)
+|.|.+-++||++++..+....+|...|.+++|+|||.+++|||.|..-+|||+|++.++..+.+ +|.+++|+|+|
T Consensus 279 asfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy 358 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY 358 (459)
T ss_pred cccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce
Confidence 99999999999999998888889999999999999999999999999999999999999998854 57999999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEcCCCCCccccccCCCcc
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFE 231 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~ 231 (359)
++++|.|++++|||++.. ..+.++.+|.. -|+.|+|+| .|.+|++ ++.|+++++|....+.
T Consensus 359 ~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~n----lVS~Vk~~p~~g~fL~T------------asyD~t~kiWs~~~~~ 421 (459)
T KOG0272|consen 359 HLATGSSDNTCKVWDLRMR-SELYTIPAHSN----LVSQVKYSPQEGYFLVT------------ASYDNTVKIWSTRTWS 421 (459)
T ss_pred EEeecCCCCcEEEeeeccc-ccceecccccc----hhhheEecccCCeEEEE------------cccCcceeeecCCCcc
Confidence 888999999999998765 56888899976 899999999 5655555 4455555566555554
Q ss_pred Ch--hhhchhhhhhhh
Q 041916 232 TS--KQRREKEVRSLL 245 (359)
Q Consensus 232 ~~--~~~~~~~v~~~~ 245 (359)
.. .++++..|-++-
T Consensus 422 ~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 422 PLKSLAGHEGKVISLD 437 (459)
T ss_pred cchhhcCCccceEEEE
Confidence 43 345566665553
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8e-37 Score=256.83 Aligned_cols=223 Identities=19% Similarity=0.303 Sum_probs=198.5
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEE-EEEecCCCCeEEEEEcC-----CC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV-GNFRTGLGRTDVMRVNP-----FN 72 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~sp-----~~ 72 (359)
|+++|| .+..+.++.++|..- .|++|+|||..||+|+.||+|++||..+|+++ ..+.+|...|++++|.| ..
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~ 217 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPC 217 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCc
Confidence 689999 899999999999996 99999999999999999999999999998765 67899999999999976 35
Q ss_pred CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEE
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDF 149 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~ 149 (359)
++||+++.||.|+|||+..+.++..+.+|..+|+|+.|--+| +|++|+.|++|++|+...|.+++.+.+ .|+.++.
T Consensus 218 r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lal 296 (480)
T KOG0271|consen 218 RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLAL 296 (480)
T ss_pred cceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeec
Confidence 789999999999999999999999999999999999997654 899999999999999999998888854 3677766
Q ss_pred c-----------C------------------------C-c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEE
Q 041916 150 S-----------Q------------------------K-G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGK 191 (359)
Q Consensus 150 s-----------~------------------------~-g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~ 191 (359)
| | + + +++++.|.++.+|+.....+++..+.+|+. -|+.
T Consensus 297 sTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~----lVn~ 372 (480)
T KOG0271|consen 297 STDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQA----LVNH 372 (480)
T ss_pred cchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhh----heee
Confidence 5 1 1 2 788889999999998777778889999977 8999
Q ss_pred EEEeeCCCEEEEEcCCCeEE------------------------------EEEcCCCCCccccccCC
Q 041916 192 VSFRPYEDVLGIGHSMGWSS------------------------------ILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 192 ~~~~p~~~~l~~~~~dg~~~------------------------------i~~~~~~d~~~~~~~~~ 228 (359)
+.|+||++++++++-|..++ ++++++.|.++++|++.
T Consensus 373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEee
Confidence 99999999999999888544 46889999999999875
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=264.03 Aligned_cols=209 Identities=18% Similarity=0.215 Sum_probs=192.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|+ .+-.++..|.+|..- ..++|+|+|++|+|++.|.+-++||+.++..+....+|...|.+++|+|||.++++|
T Consensus 242 tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG 321 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG 321 (459)
T ss_pred ceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc
Confidence 588999 555889999999875 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCC-c-
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQK-G- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~-g- 153 (359)
+.|..-+|||++++.++..+.+|..+|.+|+|+|+|..|||||.|++++|||+|...++.++++ -|+.+.|+|. |
T Consensus 322 GlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 322 GLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred CccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999999999999999999999999999999999999999999998865 4799999994 4
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++++.|++++||...+. .++..+.+|.. .|.++..+|++.++++++.|.++++|.
T Consensus 402 fL~TasyD~t~kiWs~~~~-~~~ksLaGHe~----kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVTASYDNTVKIWSTRTW-SPLKSLAGHEG----KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEEcccCcceeeecCCCc-ccchhhcCCcc----ceEEEEeccCCceEEEeccCceeeecc
Confidence 888999999999996555 78899999977 899999999999988877777666654
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.4e-35 Score=268.60 Aligned_cols=201 Identities=19% Similarity=0.274 Sum_probs=184.1
Q ss_pred CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 8 DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 8 ~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
.+....++-+|.++ .++.|+|+.++|++||.|++|++|.+.+..++..+++|..||+++.|+|.|.++|+||.|++.++
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeee
Confidence 34455678899998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCC
Q 041916 87 WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGS 161 (359)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~ 161 (359)
|......+++.+.+|.+.|.|+.|+|+++|+++||.|.+|++||+.+|..++.| .++|.+++|||+| +++++.||
T Consensus 520 Ws~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~ 599 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDG 599 (707)
T ss_pred eecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCC
Confidence 999999999999999999999999999999999999999999999999999999 4578999999999 77788899
Q ss_pred cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.|.+||+.++ ..+..+.+|.. .|.++.|+.+|..|++|+.|..+.+|
T Consensus 600 ~I~iWDl~~~-~~v~~l~~Ht~----ti~SlsFS~dg~vLasgg~DnsV~lW 646 (707)
T KOG0263|consen 600 LIKIWDLANG-SLVKQLKGHTG----TIYSLSFSRDGNVLASGGADNSVRLW 646 (707)
T ss_pred cEEEEEcCCC-cchhhhhcccC----ceeEEEEecCCCEEEecCCCCeEEEE
Confidence 9999998777 78888888866 89999999999877776666555554
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-35 Score=246.88 Aligned_cols=248 Identities=17% Similarity=0.234 Sum_probs=204.3
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
+-..+.+|.++ .|+.|+|+|..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||..||+|+.||+|++||+
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34567899998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcce-EEEeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc-eEEEEc
Q 041916 90 TTAAPL-IKMLCHQGPVSALAFHP-----NGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG-LLAVGT 159 (359)
Q Consensus 90 ~~~~~~-~~~~~h~~~v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g-l~~~~~ 159 (359)
.+++++ ..+.+|...|++++|.| .+++||+++.||+|+|||+..+.++..+. .+|+|+.|--+| +++++.
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~ 266 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQ 266 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCC
Confidence 998765 56889999999999987 67799999999999999999999998884 579999999999 889999
Q ss_pred CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-----------eCCCE-------------------------EEE
Q 041916 160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-----------PYEDV-------------------------LGI 203 (359)
Q Consensus 160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----------p~~~~-------------------------l~~ 203 (359)
|++|++|+...+ .....+.+|.. .|+.++.+ |.++. |++
T Consensus 267 DrtIkvw~a~dG-~~~r~lkGHah----wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS 341 (480)
T KOG0271|consen 267 DRTIKVWRALDG-KLCRELKGHAH----WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS 341 (480)
T ss_pred CceEEEEEccch-hHHHhhcccch----heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE
Confidence 999999996664 77888888865 78777666 44444 899
Q ss_pred EcCCCeEEE-------------------------------EEcCCCCCccccccCCC--ccChhhhchhhhhhhhhcCCC
Q 041916 204 GHSMGWSSI-------------------------------LVPGSGEPNFDSWVANP--FETSKQRREKEVRSLLDKLPP 250 (359)
Q Consensus 204 ~~~dg~~~i-------------------------------~~~~~~d~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~ 250 (359)
|+.|..+.+ +++++.|..+++|+... |......+-..|..+...-..
T Consensus 342 gsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs 421 (480)
T KOG0271|consen 342 GSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS 421 (480)
T ss_pred ecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCc
Confidence 998885443 57788999999999753 334455566666666533333
Q ss_pred CceeeCCCCCeeee
Q 041916 251 ETIMLNPSKIGTVR 264 (359)
Q Consensus 251 ~~i~~~~~~~~~~~ 264 (359)
.++ ++.+...++.
T Consensus 422 RLl-VS~SkDsTLK 434 (480)
T KOG0271|consen 422 RLL-VSGSKDSTLK 434 (480)
T ss_pred cEE-EEcCCCceEE
Confidence 343 3334344443
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-33 Score=228.65 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=181.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCC--CCE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG--LGRTDVMRVNPF--NGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp~--~~~ 74 (359)
++++|| .+|+..+.|.+|... .+++|+||...+++|+.|.+|.+||+- |.+..++..+ .+.|+|++|+|+ +.+
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 479999 888999999999986 999999999999999999999999987 5555555543 788999999998 689
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--CCceeEEEcCC
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--GHAKTLDFSQK 152 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~i~~~~~s~~ 152 (359)
|++++.|++|++||+++.+....+.+|.+.++.+++||||.+.++|+.||.+.+||++.++.+..+. ..|.+++|+|+
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn 244 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN 244 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999994 47899999999
Q ss_pred c-eEEEEcCCcEEEEcCCCCCCccceeecccC-----CCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 153 G-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM-----VKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 153 g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
. .++++.+..|+|||+.+. ..+..+..... .......+++|+++|..|++|..|+.+.+|-
T Consensus 245 rywL~~at~~sIkIwdl~~~-~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 245 RYWLCAATATSIKIWDLESK-AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred ceeEeeccCCceEEEeccch-hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 9 677777888999998765 33333221111 0133578899999999999988888776664
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-33 Score=224.74 Aligned_cols=208 Identities=18% Similarity=0.262 Sum_probs=174.9
Q ss_pred eEEEe------CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916 2 PYIYN------RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 2 v~iwd------~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
+.+|+ ..|..++.|.+|... ..+..++||++.++++.|+++++||+.+|+..+.|.+|...|.+++|+||++.
T Consensus 40 ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~q 119 (315)
T KOG0279|consen 40 IIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQ 119 (315)
T ss_pred EEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCce
Confidence 56776 346778999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEec--cCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLC--HQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL 147 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~ 147 (359)
|++|+.|.+|.+|++-. .+..++.. +.+.|+|+.|+|+ ..+|+++|.|++|++||+++.+....+ .+.++.+
T Consensus 120 ivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~ 198 (315)
T KOG0279|consen 120 IVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTV 198 (315)
T ss_pred eecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEE
Confidence 99999999999999874 45555543 3789999999997 788999999999999999999888888 4568999
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccc
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSW 225 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~ 225 (359)
++|||| .++++.||.+.+||+..+ +.++.+... ..|.+++|+|+..+|+.+. +..|+||
T Consensus 199 ~vSpDGslcasGgkdg~~~LwdL~~~-k~lysl~a~-----~~v~sl~fspnrywL~~at-------------~~sIkIw 259 (315)
T KOG0279|consen 199 TVSPDGSLCASGGKDGEAMLWDLNEG-KNLYSLEAF-----DIVNSLCFSPNRYWLCAAT-------------ATSIKIW 259 (315)
T ss_pred EECCCCCEEecCCCCceEEEEEccCC-ceeEeccCC-----CeEeeEEecCCceeEeecc-------------CCceEEE
Confidence 999999 556778999999998877 444444433 2899999999865554433 3447777
Q ss_pred cCCC
Q 041916 226 VANP 229 (359)
Q Consensus 226 ~~~~ 229 (359)
+..+
T Consensus 260 dl~~ 263 (315)
T KOG0279|consen 260 DLES 263 (315)
T ss_pred eccc
Confidence 7643
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=218.25 Aligned_cols=207 Identities=16% Similarity=0.226 Sum_probs=178.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
||++|. .+|.+..+++....- +.++..|++..||+++.. .|++||+++++ ++.+|.+|...|+++.|..+|+.++
T Consensus 21 TIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy 99 (311)
T KOG0315|consen 21 TIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY 99 (311)
T ss_pred eeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE
Confidence 689999 999999999887764 999999999999998855 89999999875 6899999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQK 152 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~ 152 (359)
+||.||+++|||++...+.+.+ .|..+|+++..+|+...|++|..+|.|++||++...+...+ ..+|.++...|+
T Consensus 100 TgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~d 178 (311)
T KOG0315|consen 100 TGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPD 178 (311)
T ss_pred ecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCC
Confidence 9999999999999986655555 47799999999999999999999999999999998776666 347899999999
Q ss_pred c--eEEEEcCCcEEEEcCCCCC-----CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 153 G--LLAVGTGSFVQILGDFSGS-----HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 g--l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
| ++++...|.+++|++.+.. .++..+..|.. .+..+.+||++++|+++++|..+.||
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~----~il~C~lSPd~k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNG----HILRCLLSPDVKYLATCSSDKTVKIW 242 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccc----eEEEEEECCCCcEEEeecCCceEEEE
Confidence 9 4555566999999987642 23344556654 89999999999999999999877764
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.8e-32 Score=223.22 Aligned_cols=197 Identities=16% Similarity=0.225 Sum_probs=177.9
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd 88 (359)
....+.+|.+- .|+.|.+| ..|+|++.|.+..+||+.+|+.+..|.+|.+.|.++.++| +++.+++|+.|+..+|||
T Consensus 137 v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD 215 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWD 215 (343)
T ss_pred eeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeee
Confidence 35679999997 99999885 4678999999999999999999999999999999999999 899999999999999999
Q ss_pred CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCC
Q 041916 89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGS 161 (359)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~ 161 (359)
++.+.++++|.+|.+.|++|.|.|+|.-|++|+.|++.++||+|..+.+..+ ..+|++++||..| ++++..|.
T Consensus 216 ~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~ 295 (343)
T KOG0286|consen 216 VRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF 295 (343)
T ss_pred ccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC
Confidence 9999999999999999999999999999999999999999999998888877 2468999999999 67777899
Q ss_pred cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++.+||...+ +....+.+|.. .|+++..+|||..|++|+.|.+++||
T Consensus 296 ~c~vWDtlk~-e~vg~L~GHeN----RvScl~~s~DG~av~TgSWDs~lriW 342 (343)
T KOG0286|consen 296 TCNVWDTLKG-ERVGVLAGHEN----RVSCLGVSPDGMAVATGSWDSTLRIW 342 (343)
T ss_pred ceeEeecccc-ceEEEeeccCC----eeEEEEECCCCcEEEecchhHheeec
Confidence 9999997666 67778888876 99999999999888887666655554
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=221.72 Aligned_cols=213 Identities=15% Similarity=0.187 Sum_probs=186.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC------eEEEEEecCCCCeEEEEEcCCCC
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG------EIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
+.||| .+...++-+.-...- ..++|+|.|+++|.|+.|+...||++.+. ...+.+.+|.+.+.|+.|-+| .
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~ 157 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-N 157 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-C
Confidence 57999 888888888877774 99999999999999999999999999865 355678999999999999885 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEE
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDF 149 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~ 149 (359)
.|++||.|.++.+||+.+++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||+|.+.++++|. +.|+++.|
T Consensus 158 ~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~f 237 (343)
T KOG0286|consen 158 HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRF 237 (343)
T ss_pred ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEE
Confidence 788999999999999999999999999999999999999 99999999999999999999999999994 46899999
Q ss_pred cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
.|+| +++++.|+++++||++.+ +.+..|.... ...+|++++|+..|++|.+|..|..+.+|.+-.+
T Consensus 238 fP~G~afatGSDD~tcRlyDlRaD-~~~a~ys~~~--~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 238 FPSGDAFATGSDDATCRLYDLRAD-QELAVYSHDS--IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ccCCCeeeecCCCceeEEEeecCC-cEEeeeccCc--ccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 9999 888899999999998876 5555555332 3457999999999999998888877666654433
No 12
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=217.06 Aligned_cols=211 Identities=16% Similarity=0.205 Sum_probs=195.6
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
.++.+..+.++ ..+.|+-||+|.++++.|.+|++|++..|.++.++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 46778888887 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--ceeeEec---cCCceeEEEcCCceEEEEcCCcEE
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK--YEVLQTL---PGHAKTLDFSQKGLLAVGTGSFVQ 164 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~--~~~~~~~---~~~i~~~~~s~~gl~~~~~d~~i~ 164 (359)
++|+.++.|.+|.+.|+.+.|+.+...+++|+.|.++++||.|+ .+|++.+ ...|.++..+...+++++.||+++
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR 168 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence 99999999999999999999999999999999999999999987 4678877 567899999988899999999999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE--------------------------------
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI-------------------------------- 212 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i-------------------------------- 212 (359)
.||++.+ ....-+.+| +|++++|+++++.+++++.++.+++
T Consensus 169 tydiR~G-~l~sDy~g~------pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 169 TYDIRKG-TLSSDYFGH------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred EEEeecc-eeehhhcCC------cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 9998877 667778887 8999999999999999999997665
Q ss_pred EEcCCCCCccccccCC
Q 041916 213 LVPGSGEPNFDSWVAN 228 (359)
Q Consensus 213 ~~~~~~d~~~~~~~~~ 228 (359)
+++|+.||.+.+|++-
T Consensus 242 V~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLV 257 (307)
T ss_pred EEeccCCceEEEEEec
Confidence 6889999999999973
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.3e-33 Score=234.10 Aligned_cols=212 Identities=17% Similarity=0.234 Sum_probs=185.9
Q ss_pred CeEEEeCCCcEEEEeccCC-Ce-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYNRDGTELHCLKEHG-AV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~-~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|+.....++.+.+|. .. ++++|+|+...+++|+.||+|+|||....+.-..+.+|.-.|.+++|+|...+|++|
T Consensus 161 ~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 161 MIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred eEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEc
Confidence 5788987777777777766 44 999999999999999999999999999888888899999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG-- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g-- 153 (359)
|.|..|++||++++.++.++.+|...|..+.|+|++++|+++|.|..+++||+|+.+.+..+. ..+.++.|+|-.
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 999999999999999999999999999999999999999999999999999999877777774 468999999965
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+.++|.||.|..|.+.........-.+|.. .|++++|+|-|.+|++|+.|..+++|.-+
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~----~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG----EIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ceeeccCCCceEEEeccccccccCCCccccc----ceeeeeccccceeEeecCCCcceeeeccC
Confidence 677889999999997644344444556654 89999999999888887777777777544
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-31 Score=244.98 Aligned_cols=170 Identities=26% Similarity=0.397 Sum_probs=162.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|. .+..++..+++|..+ +++.|+|.|.|+||+|.|++-++|......+++.+.+|.+.|.|+.|+|+..++++|
T Consensus 474 svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 474 SVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred ceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccC
Confidence 589999 888999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-- 153 (359)
|.|.+|++||+.+|..++.|.+|.++|++++|+|+|.+|++|+.||.|.+||+.++.++..+ .+.|.++.||.+|
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~v 633 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNV 633 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCE
Confidence 99999999999999999999999999999999999999999999999999999999988877 5678999999999
Q ss_pred eEEEEcCCcEEEEcCCC
Q 041916 154 LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~ 170 (359)
++++|.|++|++||+..
T Consensus 634 Lasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 634 LASGGADNSVRLWDLTK 650 (707)
T ss_pred EEecCCCCeEEEEEchh
Confidence 77788999999999654
No 15
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.7e-31 Score=242.70 Aligned_cols=215 Identities=22% Similarity=0.291 Sum_probs=186.0
Q ss_pred CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEEC-CCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDV-TMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
.+++|+ ..+. ....+.+|... ++++|+|++.++++++.|++|+|||+ ..+..+.++.+|...|++++|+|+++++
T Consensus 182 ~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i 261 (456)
T KOG0266|consen 182 LIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLL 261 (456)
T ss_pred cEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEE
Confidence 367888 5666 67778888886 99999999999999999999999999 5668999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEec----cC-CceeEE
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTL----PG-HAKTLD 148 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~----~~-~i~~~~ 148 (359)
++|+.|++|++||+++++++..+.+|.+.|++++|++++++|++++.|+.|++||+.++. ++..+ .. +++++.
T Consensus 262 ~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T KOG0266|consen 262 VSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ 341 (456)
T ss_pred EEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE
Confidence 999999999999999999999999999999999999999999999999999999999998 55555 22 579999
Q ss_pred EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
|+|++ +++++.|+.+++||+..+ .....+.+|.. ....+.+..+++.+.++++|+.|+.+.+|...+
T Consensus 342 fsp~~~~ll~~~~d~~~~~w~l~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 342 FSPNGKYLLSASLDRTLKLWDLRSG-KSVGTYTGHSN-LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred ECCCCcEEEEecCCCeEEEEEccCC-cceeeecccCC-cceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 99999 777788899999997766 67778888854 112455566677888888888888777777655
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.9e-31 Score=226.93 Aligned_cols=209 Identities=22% Similarity=0.315 Sum_probs=190.4
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
.++||+.+|..+.+|..|.++ .++.|+..|.||++++-|+++.+||..+|.....+.-|..+-..+.|-.+ ..+++++
T Consensus 258 ~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~ 336 (524)
T KOG0273|consen 258 EARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSS 336 (524)
T ss_pred EEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeecC
Confidence 378999999999999999998 99999999999999999999999999999999999999888788899654 5789999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc---
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--- 153 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--- 153 (359)
.||.|+|+-+....|+.++.+|.++|.++.|+|.|.+|+++|.|++++||.+....+.+.+ ...|..+.|+|.|
T Consensus 337 td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~ 416 (524)
T KOG0273|consen 337 TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVT 416 (524)
T ss_pred CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCcc
Confidence 9999999999999999999999999999999999999999999999999999887776666 4568899999875
Q ss_pred --------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 154 --------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 154 --------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+++++.|++|++||...+ .++..+..|+. +|.+++|+|+|+++++|+.||.+.+|.+
T Consensus 417 ~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~----pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 417 SNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQE----PVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred CCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCC----ceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 788899999999998777 78888989877 9999999999999999999998887754
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.98 E-value=3.7e-30 Score=205.44 Aligned_cols=212 Identities=14% Similarity=0.185 Sum_probs=177.3
Q ss_pred CeEEEe-CCCc--EEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|++|| +++. ++.+|.+|.. ++++.|..+|+.++|||.||+++|||++...+.+.+. |..+|+++..+|+...|+
T Consensus 62 hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLi 140 (311)
T KOG0315|consen 62 HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELI 140 (311)
T ss_pred eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEE
Confidence 489999 5554 6899999955 6999999999999999999999999999877666665 669999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eeeEec---cCCcee
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY------EVLQTL---PGHAKT 146 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~---~~~i~~ 146 (359)
+|..+|.|++||+....+...+. .-..+|.++++.|||.+|+.+...|..++|++-+. .|+..+ .+++..
T Consensus 141 s~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred eecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 99999999999998775554443 33457999999999999999999999999999764 344444 568999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
+.+||++ +++++.|.+++||+..+.-+....+.+|+. .+++++||.||.||++|+.|+..++|....
T Consensus 221 C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r----WvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 221 CLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR----WVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred EEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc----eEEeeeeccCccEEEecCCCCceeeccccc
Confidence 9999999 788889999999996655344456667755 899999999999999988887777666443
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.5e-31 Score=219.63 Aligned_cols=214 Identities=14% Similarity=0.208 Sum_probs=193.7
Q ss_pred cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
+....+.+|.+- .|+++.|....|++|+.|++|+|||+.+|+...++.+|...|..+++|+-..|+++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 345678899996 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEcCCcE
Q 041916 89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGTGSFV 163 (359)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~d~~i 163 (359)
+...+.++.+.+|-+.|.|++.+|.-..|++|+.|.++++||+|+...+..+. .+|.++.+.|-. +++++.|++|
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 99999999999999999999999999999999999999999999999999884 468888888755 9999999999
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE----------------------------EEEEc
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS----------------------------SILVP 215 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~----------------------------~i~~~ 215 (359)
++||+..+ +....+..|.. .|.+++.+|....+++++.|.+- .++++
T Consensus 302 rlWDl~ag-kt~~tlt~hkk----svral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 302 RLWDLRAG-KTMITLTHHKK----SVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred EEeeeccC-ceeEeeecccc----eeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEE
Confidence 99998777 66677777765 89999999999999988887721 24788
Q ss_pred CCCCCccccccCC
Q 041916 216 GSGEPNFDSWVAN 228 (359)
Q Consensus 216 ~~~d~~~~~~~~~ 228 (359)
|++.+.+..|+..
T Consensus 377 G~dng~~~fwdwk 389 (460)
T KOG0285|consen 377 GGDNGSIMFWDWK 389 (460)
T ss_pred cCCceEEEEEecC
Confidence 9999999999874
No 19
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-31 Score=230.24 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=191.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg 78 (359)
|.||+ .+.....++...... .+++|..||.+||.|+..|.|+|||+.+...++.+.+|..+++.+.|+|++ ..+++|
T Consensus 50 vqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~ 129 (487)
T KOG0310|consen 50 VQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG 129 (487)
T ss_pred EEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec
Confidence 56777 555556667777776 999999999999999999999999988877889999999999999999965 678889
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEec--cCCceeEEEcCCc-
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTL--PGHAKTLDFSQKG- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~--~~~i~~~~~s~~g- 153 (359)
++|+.+++||+.+......+.+|.+.|+|.+|+| .+++++|||.||+|++||+|.. ..+.++ ..+|.++.+-|.|
T Consensus 130 sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 130 SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS 209 (487)
T ss_pred CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC
Confidence 9999999999998886667889999999999999 4668999999999999999987 677777 4589999999998
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
+++.+.++.+++||+.++.+.+.....|.. .|+|+++..++..|++|+-||.+++|. .+.-..+.-|.+
T Consensus 210 ~iasAgGn~vkVWDl~~G~qll~~~~~H~K----tVTcL~l~s~~~rLlS~sLD~~VKVfd-~t~~Kvv~s~~~ 278 (487)
T KOG0310|consen 210 LIASAGGNSVKVWDLTTGGQLLTSMFNHNK----TVTCLRLASDSTRLLSGSLDRHVKVFD-TTNYKVVHSWKY 278 (487)
T ss_pred EEEEcCCCeEEEEEecCCceehhhhhcccc----eEEEEEeecCCceEeecccccceEEEE-ccceEEEEeeec
Confidence 887778899999999888777777777876 899999999999999999999999888 344455666665
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-30 Score=216.92 Aligned_cols=214 Identities=20% Similarity=0.269 Sum_probs=192.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|.||| .+|+...++.+|... ..+++|+-+.||++++.|+.|+.||+...+.++.+.+|.+.|.|++.+|.-..|++|
T Consensus 174 tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~ 253 (460)
T KOG0285|consen 174 TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTG 253 (460)
T ss_pred eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEec
Confidence 589999 999999999999997 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-e
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-L 154 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l 154 (359)
+.|.+++|||+++...+..+.+|..+|.++.+.|-...+++||.|++|++||++.++...++ ...+.+++.+|.. +
T Consensus 254 grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~ 333 (460)
T KOG0285|consen 254 GRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENL 333 (460)
T ss_pred CCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhh
Confidence 99999999999999999999999999999999998888999999999999999999887777 4568999999998 6
Q ss_pred EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCC
Q 041916 155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP 220 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~ 220 (359)
++.+.-..|+-|++..+ ..+..+.+|.. -|++++...| .++++|+.+|.+.+|..-++.+
T Consensus 334 fASas~dnik~w~~p~g-~f~~nlsgh~~----iintl~~nsD-~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 334 FASASPDNIKQWKLPEG-EFLQNLSGHNA----IINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred hhccCCccceeccCCcc-chhhccccccc----eeeeeeeccC-ceEEEcCCceEEEEEecCcCcc
Confidence 66666778999998777 55566777765 7888887776 5788999999888887665543
No 21
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.1e-30 Score=203.08 Aligned_cols=211 Identities=19% Similarity=0.246 Sum_probs=189.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|+ ..|.+++++.+|..- ..++.+.|...|++|+.|..|.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|
T Consensus 40 tvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 40 TVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred eEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEec
Confidence 589999 899999999999886 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cCCceeEEEcCCc--
Q 041916 79 HSGGTVTMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PGHAKTLDFSQKG-- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s~~g-- 153 (359)
+.|.++++||.++. +|++.+....+.|.+|.++ ++.|++|+.||+++.||+|.|.....+ ..+|++++|+++|
T Consensus 120 sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc 197 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNC 197 (307)
T ss_pred cccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCE
Confidence 99999999998764 6888888888899999874 568999999999999999999987776 6789999999999
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
.++++.|++|++.|-.++ +.+..|.+|.. .. .=...+++.....+++|+.||.+.+|.-.
T Consensus 198 ~La~~l~stlrLlDk~tG-klL~sYkGhkn-~e-ykldc~l~qsdthV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 198 SLASSLDSTLRLLDKETG-KLLKSYKGHKN-ME-YKLDCCLNQSDTHVFSGSEDGKVYFWDLV 257 (307)
T ss_pred EEEeeccceeeecccchh-HHHHHhccccc-ce-eeeeeeecccceeEEeccCCceEEEEEec
Confidence 888899999999996565 89999999964 22 34566788888899999999998888644
No 22
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.5e-29 Score=200.59 Aligned_cols=214 Identities=16% Similarity=0.233 Sum_probs=179.5
Q ss_pred EEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCC---eEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916 11 ELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMG---EIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTV 84 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v 84 (359)
.++.+++|.+- ..++|+|- |.+|||||.|..|++|+...+ .+...+. +|...|.+++|+|.|++|++||.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 46788999994 99999998 889999999999999999853 3443342 688999999999999999999999999
Q ss_pred EEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec---cCCceeEEEcCCc--e
Q 041916 85 TMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL---PGHAKTLDFSQKG--L 154 (359)
Q Consensus 85 ~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~---~~~i~~~~~s~~g--l 154 (359)
.||.-..+ +++.++.+|...|.|++|+++|++||+|+.|.+|-+|.+.. ..++..+ ...|..+.|+|.. |
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 99975543 67888999999999999999999999999999999999874 3455555 3468899999976 8
Q ss_pred EEEEcCCcEEEEcCCCC--CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE-------------------
Q 041916 155 LAVGTGSFVQILGDFSG--SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL------------------- 213 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~------------------- 213 (359)
++++.|++|++|....+ -.+.+.+.+|.. .|.+++|+|.|..|++++.|+.++||
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~----TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHEN----TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPW 241 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccc----eEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEeeee
Confidence 88999999999985422 245677778865 89999999999999999999987774
Q ss_pred -----EcCCCCCccccccCC
Q 041916 214 -----VPGSGEPNFDSWVAN 228 (359)
Q Consensus 214 -----~~~~~d~~~~~~~~~ 228 (359)
.++++|+.|+++...
T Consensus 242 ~~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 242 DNGVIASGGGDDAIRLFKES 261 (312)
T ss_pred cccceEeccCCCEEEEEEec
Confidence 456777778777643
No 23
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.2e-31 Score=224.77 Aligned_cols=193 Identities=20% Similarity=0.311 Sum_probs=170.6
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
..++.|..+ +++.|++++.+++||+.+|.|++|+..-.. +..+..| ...|++++|+|....++++|.||+|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 345679888 999999999999999999999999987444 4455554 4899999999999999999999999999999
Q ss_pred CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEE
Q 041916 91 TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQI 165 (359)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i 165 (359)
..+....+.+|.-.|.++.|+|.-.+|+++|.|..|++||.+++.++.++ ...|..+.|+|++ |+++|.|..+++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 99888889999999999999999999999999999999999999998888 5578999999999 888999999999
Q ss_pred EcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEE
Q 041916 166 LGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSS 211 (359)
Q Consensus 166 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~ 211 (359)
||+++. +.+..+.+|.. .|+++.|+|-. .+|++|+.||.+.
T Consensus 291 ~DiR~m-kEl~~~r~Hkk----dv~~~~WhP~~~~lftsgg~Dgsvv 332 (464)
T KOG0284|consen 291 FDIRTM-KELFTYRGHKK----DVTSLTWHPLNESLFTSGGSDGSVV 332 (464)
T ss_pred EehhHh-HHHHHhhcchh----hheeeccccccccceeeccCCCceE
Confidence 998754 67788888876 89999999964 5778888888433
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.3e-29 Score=227.19 Aligned_cols=210 Identities=19% Similarity=0.253 Sum_probs=185.9
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+-||+ .+-.-+...++|... ++++++|||+++|||+.||.|+|||..+|-|..+|..|.+.|+.+.|+..|+.++++|
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 45788 666667777889887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEec-cCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceeeEec---cCCceeEEEcCCc-
Q 041916 80 SGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSGKEC-KIKIWDLRKYEVLQTL---PGHAKTLDFSQKG- 153 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g- 153 (359)
-||+|+.||+......+++.. .+-...|++..|.|..+..|+.|. .|.+|++.+|+.+-.+ +++|.+++|+|+|
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 999999999999988888874 344678999999999999999886 6999999999998888 6789999999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+++++.|.+|++||+........++.... .+.+++|.|+|+.|++++.||.+.+|.+-
T Consensus 492 ~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-----dvl~vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 492 LLASGSWDKTVRIWDIFSSSGTVETLEIRS-----DVLAVSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred eEEeccccceEEEEEeeccCceeeeEeecc-----ceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence 88899999999999766544555554332 69999999999999999999999998753
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-30 Score=217.39 Aligned_cols=209 Identities=12% Similarity=0.146 Sum_probs=186.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+|++|| .+|+....+++|.+. ..++|+..|.+|++++.|-.+.+||..+ .+++....+|...|.+++|-|.|.+|++
T Consensus 131 tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS 210 (406)
T KOG0295|consen 131 TIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILS 210 (406)
T ss_pred eEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeee
Confidence 589999 999999999999997 9999999999999999998899999986 4677788899999999999999999999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC--
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK-- 152 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~-- 152 (359)
++.|.+|+.|++.++-++.+|.+|+..|..+..+.||.++|+++.|.+|++|-+.+..+...+ +.+|-+++|-|.
T Consensus 211 ~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~ 290 (406)
T KOG0295|consen 211 CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS 290 (406)
T ss_pred cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc
Confidence 999999999999999999999999999999999999999999999999999999998665555 557888888652
Q ss_pred ------------c---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 153 ------------G---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 153 ------------g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+ +.+++.|++|++||+.++ .++.++.+|.. .|.+++|+|.|+||+++.+|+.+++|.
T Consensus 291 ~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdn----wVr~~af~p~Gkyi~ScaDDktlrvwd 362 (406)
T KOG0295|consen 291 YPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDN----WVRGVAFSPGGKYILSCADDKTLRVWD 362 (406)
T ss_pred CcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccc----eeeeeEEcCCCeEEEEEecCCcEEEEE
Confidence 2 667788999999999888 78888888866 999999999999888876666555554
No 26
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.1e-28 Score=225.50 Aligned_cols=201 Identities=13% Similarity=0.212 Sum_probs=166.7
Q ss_pred EeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 14 CLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
.+.+|.+. ++++|+| ++.+|++|+.|++|++||+.++ .++..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 46788886 9999999 7899999999999999999765 3567888999999999999985 69999999999
Q ss_pred EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC----CceeEEEcCCc--eEEE
Q 041916 84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----HAKTLDFSQKG--LLAV 157 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~i~~~~~s~~g--l~~~ 157 (359)
|+|||+.++..+..+.+|.+.|.+++|+|+|.+|++++.|++|++||+++++.+..+.+ .+..+.|++++ ++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 99999999998889999999999999999999999999999999999999988877733 23567888886 6665
Q ss_pred E----cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEcCC
Q 041916 158 G----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVPGS 217 (359)
Q Consensus 158 ~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~~~ 217 (359)
+ .|+.|++||+.+...+......+ ....+....|++++.+|++|+ .||.+++|....
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d---~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLD---QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccC---CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 5 36899999987654444433322 122466678999999988877 488888876544
No 27
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-29 Score=223.03 Aligned_cols=213 Identities=18% Similarity=0.213 Sum_probs=195.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|.||| .+...+..+.-..-+ ++..|-+..+.+++|+.|..|+||+..+++.+..|..|..-|.|++.+|...+++++
T Consensus 36 ~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLts 115 (794)
T KOG0276|consen 36 DVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTS 115 (794)
T ss_pred eeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEec
Confidence 478999 888899999887777 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc
Q 041916 79 HSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g 153 (359)
|+|-+|++||-... .+.++|.+|...|.+++|+| |.+.+|++|.|++|++|.+....+..++.+ .|+|+++-+.|
T Consensus 116 SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 116 SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence 99999999998754 67889999999999999999 788999999999999999999888888844 68999999988
Q ss_pred ----eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 154 ----LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 154 ----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+++++.|.+++|||..+. .+++++.+|.. .|..++|+|.-.++++|+.||+++||.+.+.
T Consensus 196 dkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~----Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 196 DKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTN----NVSFVFFHPELPIIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred CcceEEecCCCceEEEeecchH-HHHHHhhcccc----cceEEEecCCCcEEEEecCCccEEEecCcce
Confidence 788888999999998776 78999999976 8999999999999999999998888876543
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.2e-30 Score=220.93 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=181.6
Q ss_pred eEEEe--CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 041916 2 PYIYN--RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSL 77 (359)
Q Consensus 2 v~iwd--~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s 77 (359)
|+||+ .++.+++++.+|..+ ..++|+++|..++|+|.|+.|++||+.+|+++..+... ..++|+.|+|++ +.+++
T Consensus 239 vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~-~~~~cvkf~pd~~n~fl~ 317 (503)
T KOG0282|consen 239 VKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLD-KVPTCVKFHPDNQNIFLV 317 (503)
T ss_pred EEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecC-CCceeeecCCCCCcEEEE
Confidence 78999 679999999999998 99999999999999999999999999999999998754 578999999998 89999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g 153 (359)
|+.|+.|+.||+++++.++.+..|-+.|..|.|-++|..+++++.|+++++|+.+..-++... .....++..+|++
T Consensus 318 G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~ 397 (503)
T KOG0282|consen 318 GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG 397 (503)
T ss_pred ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCC
Confidence 999999999999999999999999999999999999999999999999999999987766555 2356899999999
Q ss_pred --eEEEEcCCcEEEEcCCCC--CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 --LLAVGTGSFVQILGDFSG--SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 --l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++-+.|+.|.+|.+... ......+.+|.. .+. -..+.|||||.+|++|+.+|.+.+|.
T Consensus 398 ~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v-aGy-s~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 398 KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV-AGY-SCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred CeehhhccCceEEEEecccccccCHhhhhcceec-cCc-eeeEEEcCCCCeEEeecCCccEEEee
Confidence 555578999999985432 234456778865 444 46789999999999988888666653
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-29 Score=211.17 Aligned_cols=208 Identities=17% Similarity=0.220 Sum_probs=185.8
Q ss_pred eEEEe--CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYN--RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd--~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+.+|| ....++..+.+|... .++.|-|.|.++++++.|.+|+.|++.+|-++.++.+|...|..++.+.||.+++++
T Consensus 174 ~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 174 AKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred hhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 56788 234567778889887 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---------------CCEEEEEeCCCeEEEEEcCCceeeEecc--
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---------------GHLMATSGKECKIKIWDLRKYEVLQTLP-- 141 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---------------~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 141 (359)
+.|.+|++|-+.++++...+..|.-+|.+++|.|. +.++.+++.|++|++||+.++.++.++.
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 99999999999999999999999999999999772 2589999999999999999999999994
Q ss_pred -CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 142 -GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 142 -~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
..|..++|+|.| ++++..|+++++||+.+. .+...+..|.. -++++.|+.+..++++|+-|..+.+|-
T Consensus 334 dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~ah~h----fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 334 DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCCCcc----eeEEEecCCCCceEEeccccceeeeee
Confidence 469999999999 788889999999998776 67777777766 899999999998888877777666553
No 30
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.3e-28 Score=211.37 Aligned_cols=210 Identities=19% Similarity=0.293 Sum_probs=168.0
Q ss_pred CeEEEe-CCCcEEEEec---cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--------------------
Q 041916 1 YPYIYN-RDGTELHCLK---EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-------------------- 55 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~---~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------------- 55 (359)
.|+||| .+|+.+..|. +|.+. .+++|+||+..++|++.|.+++|||+.+++++.+
T Consensus 213 ki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~ 292 (603)
T KOG0318|consen 213 KIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDH 292 (603)
T ss_pred cEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCe
Confidence 478999 9999999998 78887 9999999999999999999999999987655443
Q ss_pred -----------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce-----------EEEecc
Q 041916 56 -----------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL-----------IKMLCH 101 (359)
Q Consensus 56 -----------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~-----------~~~~~h 101 (359)
+.+|...|+++..+|++.+|++|+.||.|.-|+..++..- ..+..+
T Consensus 293 lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 293 LITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred EEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 4589999999999999999999999999999997654221 101000
Q ss_pred C----------------------------------------------------------------------CCeEEEEEc
Q 041916 102 Q----------------------------------------------------------------------GPVSALAFH 111 (359)
Q Consensus 102 ~----------------------------------------------------------------------~~v~~i~~~ 111 (359)
. -...+++++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 0 012679999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceee-----EeccCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCC
Q 041916 112 PNGHLMATSGKECKIKIWDLRKYEVL-----QTLPGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMV 184 (359)
Q Consensus 112 ~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~ 184 (359)
|++..+++|+.|+.|++|.+...... ....++|+++++||++ +++++ ..+.+.+||..+.......+.-|..
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHta- 531 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTA- 531 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeee-
Confidence 99999999999999999999875532 2237899999999999 55544 5689999998777554444444654
Q ss_pred CCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 185 KGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 185 ~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.|.+++|+|+...+++|+.|-.+.+|.
T Consensus 532 ---kI~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 532 ---KINCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ---eEEEEEeCCCceEEEeccccceEEEEE
Confidence 999999999999999988887665543
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=9.6e-28 Score=201.17 Aligned_cols=208 Identities=18% Similarity=0.262 Sum_probs=182.8
Q ss_pred EEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 3 YIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
+||+ .+|.....+.+|.+. +++.|+.+|.+||||+.+|.|+||...++.....+...-..+.=|.|+|.+..|++|+.
T Consensus 89 flW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~ 168 (399)
T KOG0296|consen 89 FLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST 168 (399)
T ss_pred EEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecC
Confidence 7999 999999999999997 99999999999999999999999999999988888766677888999999999999999
Q ss_pred CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------------------
Q 041916 81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------------------- 140 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------------------- 140 (359)
||.|.+|.+.+......+.+|..++++-.|.|+|+.++++..||+|++||+.++.++..+
T Consensus 169 DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 169 DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTL 248 (399)
T ss_pred CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccccee
Confidence 999999999988888889999999999999999999999999999999999876654431
Q ss_pred ------------------------------------------------------------------------------cC
Q 041916 141 ------------------------------------------------------------------------------PG 142 (359)
Q Consensus 141 ------------------------------------------------------------------------------~~ 142 (359)
+.
T Consensus 249 ~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~ 328 (399)
T KOG0296|consen 249 TKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED 328 (399)
T ss_pred EeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC
Confidence 11
Q ss_pred CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 143 HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 143 ~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+|..+.|.++. +++++.+|.|+.||.+++ .....|.+|.. .|.+++++|+++.+++++.|+...+|-.
T Consensus 329 ~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG-~l~~~y~GH~~----~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 329 GVTKLKWLNTDYLLTACANGKVRQWDARTG-QLKFTYTGHQM----GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ceEEEEEcCcchheeeccCceEEeeecccc-ceEEEEecCch----heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 23444566644 788888999999998777 78889999987 9999999999999999999888777653
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=225.79 Aligned_cols=201 Identities=24% Similarity=0.371 Sum_probs=175.8
Q ss_pred CeEEEe--CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN--RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd--~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+|+||| ..+..+.++.+|... ++++|+|+++++++|+.|++|+|||+.+++++..+.+|.+.|++++|++++++|++
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s 305 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS 305 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence 589999 455889999999997 99999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCc--ceEEEeccCCC--eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC------ceeE
Q 041916 78 GHSGGTVTMWKPTTAA--PLIKMLCHQGP--VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH------AKTL 147 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~--~~~~~~~h~~~--v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------i~~~ 147 (359)
++.||.|++||+.++. +...+..+... ++++.|+|++.++++++.|+.+++||++.+.++..+.++ +.+.
T Consensus 306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~ 385 (456)
T KOG0266|consen 306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP 385 (456)
T ss_pred cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence 9999999999999998 55667666555 999999999999999999999999999999888877432 2333
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecc-cCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH-SMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
..++.+ +++++.|+.|++||+.++ ..+..+.+| .. .+..+.|+|...++++++.
T Consensus 386 ~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~h~~~----~~~~~~~~~~~~~~~s~s~ 442 (456)
T KOG0266|consen 386 TLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEGHSKA----AVSDLSSHPTENLIASSSF 442 (456)
T ss_pred cccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcCCCCC----ceeccccCCCcCeeeecCc
Confidence 446666 788889999999998775 677778888 44 8999999999988877663
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=4.6e-28 Score=219.84 Aligned_cols=209 Identities=20% Similarity=0.271 Sum_probs=186.5
Q ss_pred EEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 3 YIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
.+|. .+-.+++.+.-.... ..++|+..|..||.|+. -|.+-||+..+...+...++|...+++++++|||+++|+|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 4677 677788888877555 99999999999998875 48999999999988999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--C--CceeEEEcCCc-e
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--G--HAKTLDFSQKG-L 154 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~--~i~~~~~s~~g-l 154 (359)
.||.|+|||..++-++.+|..|.+.|+.+.|+..|+.++++|.||+|+.||+..++..++|. . ...|++..|.| +
T Consensus 370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGel 449 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGEL 449 (893)
T ss_pred CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999983 3 34899999999 4
Q ss_pred E-EEEcCC-cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 155 L-AVGTGS-FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 155 ~-~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+ +++.|. .|.+|++.++ +.+..+.+|.+ ||.+++|+|.+..|++|+.|.++++|..-
T Consensus 450 V~AG~~d~F~IfvWS~qTG-qllDiLsGHEg----PVs~l~f~~~~~~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 450 VCAGAQDSFEIFVWSVQTG-QLLDILSGHEG----PVSGLSFSPDGSLLASGSWDKTVRIWDIF 508 (893)
T ss_pred EEeeccceEEEEEEEeecC-eeeehhcCCCC----cceeeEEccccCeEEeccccceEEEEEee
Confidence 4 445554 7999999888 78889999977 99999999999999999999888886443
No 34
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.8e-27 Score=219.45 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=165.5
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe--------EEEEEecCCCCeEEEEEcC
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE--------IVGNFRTGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~sp 70 (359)
|.+|+ .....+..+.+|.+. .+++|+|+ +.+||||+.||+|++||+.++. ++..+.+|...|.+++|+|
T Consensus 56 I~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 56 IRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred EEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 56777 445567889999886 99999997 7899999999999999997642 3456788999999999999
Q ss_pred CCCE-EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---Ccee
Q 041916 71 FNGV-VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKT 146 (359)
Q Consensus 71 ~~~~-l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~ 146 (359)
++.. |++|+.||+|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|++||++++..+..+.+ .+.+
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s 214 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNT 214 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCcee
Confidence 9865 5789999999999999988777665 667899999999999999999999999999999998887743 2222
Q ss_pred -----EEEcCCc--eEEEEcCC----cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 147 -----LDFSQKG--LLAVGTGS----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 147 -----~~~s~~g--l~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
..|++++ ++++|.++ .|+|||+.....++..+..+. ..+.+......+++.++++|+.|+.+++|..
T Consensus 215 ~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 215 KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 2345776 77777664 799999876545554443322 1223444444556888889889998888875
Q ss_pred C
Q 041916 216 G 216 (359)
Q Consensus 216 ~ 216 (359)
.
T Consensus 293 ~ 293 (568)
T PTZ00420 293 S 293 (568)
T ss_pred c
Confidence 4
No 35
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=201.94 Aligned_cols=204 Identities=18% Similarity=0.221 Sum_probs=176.7
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
+..+.+|.+. +.+.|+|+|.+||||+.|..|.+|++. ..+-...+++|.+.|..+.|.+|++.|++++.|.+|+.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 3456789887 999999999999999999999999965 34556788899999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEE
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQ 164 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~ 164 (359)
.+|+.+..+.+|.+-|+++.-+.-|. ++.+++.|+++++||+|+..+++++ +.+++++.|...+ +++++-|+.|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence 99999999999999999988554444 5678889999999999999999999 5689999999988 99999999999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCccC
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFET 232 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~~ 232 (359)
+||++.+ .....+.+|.. +|+.+..+|+|.++.+-+. |..+++|++.||..
T Consensus 200 vWd~r~~-d~~~~lsGh~D----tIt~lsls~~gs~llsnsM------------d~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 200 VWDLRKN-DGLYTLSGHAD----TITGLSLSRYGSFLLSNSM------------DNTVRVWDVRPFAP 250 (338)
T ss_pred eeccccC-cceEEeecccC----ceeeEEeccCCCccccccc------------cceEEEEEecccCC
Confidence 9998776 67888888876 9999999999987766444 55566666665543
No 36
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=4.8e-27 Score=204.68 Aligned_cols=212 Identities=24% Similarity=0.356 Sum_probs=184.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|++|+ .++.....+..|... ..+.|+|++.+|++++.+|.|.+||+.+++.+..+..|...+.++.|+|++.+++++
T Consensus 32 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 111 (289)
T cd00200 32 TIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111 (289)
T ss_pred EEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEe
Confidence 378999 777778888888887 799999999999999999999999999888888899999899999999998899988
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-- 153 (359)
+.||.|.+||+.+++....+..|...|.+++|+|++.++++++.|+.|.+||+++++++..+ ...+.+++|+|++
T Consensus 112 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 112 SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence 88999999999988888888889999999999999999998888999999999988877766 3478999999998
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
+++++.++.|.+||+..+ .....+..|.. .+.+++|+|++.++++++.+|.+.+|....
T Consensus 192 l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTG-KCLGTLRGHEN----GVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EEEecCCCcEEEEECCCC-ceecchhhcCC----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 777778999999997665 45555555544 899999999988888887788777776543
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.4e-27 Score=204.38 Aligned_cols=208 Identities=23% Similarity=0.387 Sum_probs=181.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|++|+ .++..+..+..|... .++.|+|++.++++++.++.|.+||+.+++....+..|...+.+++|+|++.+++++
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 478999 666788888888865 999999999999988889999999999999999999999999999999999999988
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-e
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-L 154 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l 154 (359)
+.||.|.+||+++++++..+..|...|.++.|+|++..+++++.|+.|.+||++++.++..+ ...+.+++|+|++ +
T Consensus 154 ~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 233 (289)
T cd00200 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233 (289)
T ss_pred cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcE
Confidence 88999999999999988889999999999999999999999999999999999998887777 4578999999988 5
Q ss_pred EEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 155 LAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 155 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++++. ++.|++||+.++ .....+..|.. .|.+++|+|++.+|++++.||.+.+|
T Consensus 234 ~~~~~~~~~i~i~~~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 234 LASGSEDGTIRVWDLRTG-ECVQTLSGHTN----SVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred EEEEcCCCcEEEEEcCCc-eeEEEccccCC----cEEEEEECCCCCEEEEecCCCeEEec
Confidence 55554 999999997665 45555555544 89999999999999998888866665
No 38
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.9e-27 Score=206.76 Aligned_cols=212 Identities=17% Similarity=0.283 Sum_probs=189.5
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+++|| +|.-+-.+.+|... ++++|-|.. ..++||+.|++|.+|+=...+.-.+++.|...|+|+.|+|||..+++.+
T Consensus 131 ~F~~D-SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 131 VFLWD-SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEEec-CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 45676 57777889999998 999999974 6799999999999999877788889999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------CCceeEEEc
Q 041916 80 SGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------GHAKTLDFS 150 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~i~~~~~s 150 (359)
.||.|.+||-.+++.+..+. +|.+.|.+++|+||+..++|++.|.++++||+.+.+++.++. ..-..+.|-
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 99999999999999999988 999999999999999999999999999999999999999882 223556677
Q ss_pred CCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 151 QKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 151 ~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
.+.+++++.+|+|.+++.... .++..+.+|.. .|+++..+|++.+|++|+.||.+.-|..+++.
T Consensus 290 kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK----~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDP-SVLKVISGHNK----SITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred CCeEEEEEcCcEEEEecccCC-Chhheeccccc----ceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 566999999999999997666 48888999977 89999999999999999999988888776654
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-26 Score=187.75 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=170.2
Q ss_pred CeEEEeCC-C---cEEEEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCC
Q 041916 1 YPYIYNRD-G---TELHCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 1 ~v~iwd~~-g---~~~~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~ 72 (359)
.|+||+.. + .+...+. +|... ++++|+|.|++||++|.|.++.||.-..+ +++..+.+|...|-|++|+++|
T Consensus 38 ~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG 117 (312)
T KOG0645|consen 38 AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG 117 (312)
T ss_pred eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC
Confidence 37899933 3 2333443 57776 99999999999999999999999997654 6889999999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---CceeeEecc---CC
Q 041916 73 GVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR---KYEVLQTLP---GH 143 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~---~~ 143 (359)
++||+++.|..|-+|.+..+ .+...++.|...|..+.|+|...+|+++|.|.+|++|+-. .+.++.++. +.
T Consensus 118 ~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T 197 (312)
T KOG0645|consen 118 NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT 197 (312)
T ss_pred CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce
Confidence 99999999999999998744 4677788999999999999999999999999999999766 356788884 36
Q ss_pred ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 144 AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
|-+++|+|.| +++++.|++++||-..+. .-..| ...+..+.|. ...|++++.|+.+.+|....
T Consensus 198 VW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~----sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 198 VWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMH----SRALYDVPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred EEEEEecCCCceEEEecCCcceEeeeeccC-----cchhc----ccceEeeeec--ccceEeccCCCEEEEEEecC
Confidence 8999999999 888999999999975432 11122 2378888888 56788888888888877553
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=195.70 Aligned_cols=216 Identities=20% Similarity=0.288 Sum_probs=184.0
Q ss_pred eEEEeCCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 041916 2 PYIYNRDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSL 77 (359)
Q Consensus 2 v~iwd~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s 77 (359)
|.+|+..|. -...+++|.++ ..+.|.+|++.|+++|.|.+|+.||+.+|++...+++|...|+++.-+.-| .++.+
T Consensus 71 I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 71 IVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred EEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEe
Confidence 789994444 36788899998 999999999999999999999999999999999999999999999855445 57788
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc-
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG- 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g- 153 (359)
|+.||+++|||+++..++.++. .+-+++++.|..++..+.+|+-|+.|++||+|.....+.+.+ +|+.+..+|+|
T Consensus 151 gsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred cCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC
Confidence 9999999999999988887764 356799999999999999999999999999999999998854 68999999999
Q ss_pred -eEEEEcCCcEEEEcCCC---CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 154 -LLAVGTGSFVQILGDFS---GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+++-+.|.++++||.+. +..++..+.+|.....-....++|+|+++.+.+|+.|.++.+|.+.+.
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r 298 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR 298 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence 88889999999999754 334466677765333445678899999999999999988888876553
No 41
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.2e-26 Score=230.30 Aligned_cols=212 Identities=15% Similarity=0.206 Sum_probs=175.6
Q ss_pred CeEEEe-CC----Cc----EEEEeccCCCeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 041916 1 YPYIYN-RD----GT----ELHCLKEHGAVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP 70 (359)
Q Consensus 1 ~v~iwd-~~----g~----~~~~l~~h~~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 70 (359)
+|+||+ .. +. .+..+.++..+.+++|+|. +.+|++++.||+|++||+.+++.+..+.+|.+.|++++|+|
T Consensus 506 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p 585 (793)
T PLN00181 506 KIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS 585 (793)
T ss_pred EEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC
Confidence 478998 32 11 2334555655689999884 78999999999999999999999999999999999999997
Q ss_pred -CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEc-CCCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCc
Q 041916 71 -FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH-PNGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHA 144 (359)
Q Consensus 71 -~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i 144 (359)
++.+|++|+.||+|++||++++..+..+..+ ..|.++.|+ ++|.+|++|+.|+.|++||+++.. ++..+ ...|
T Consensus 586 ~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V 664 (793)
T PLN00181 586 ADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTV 664 (793)
T ss_pred CCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCE
Confidence 7889999999999999999999888888754 679999995 579999999999999999999865 44444 4578
Q ss_pred eeEEEcCCc-eEEEEcCCcEEEEcCCCC-----CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 145 KTLDFSQKG-LLAVGTGSFVQILGDFSG-----SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 145 ~~~~~s~~g-l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
.++.|.+.. +++++.|+.|++||+... ..++..+.+|.. .+..++|+|++.+|++|+.||.+.+|....
T Consensus 665 ~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~----~i~~v~~s~~~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 665 SYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN----VKNFVGLSVSDGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred EEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC----CeeEEEEcCCCCEEEEEeCCCEEEEEECCC
Confidence 999998555 888999999999997643 134556666654 789999999999999999999999987543
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=205.72 Aligned_cols=203 Identities=18% Similarity=0.296 Sum_probs=170.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
||.||| .+-.++..+.+|++. .|+.|. .+.+++|+.|.+|++||+.+|+++.++-+|...|..+.|+ +.+++++
T Consensus 218 TikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtc 293 (499)
T KOG0281|consen 218 TIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTC 293 (499)
T ss_pred ceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEe
Confidence 689999 788889999999997 999995 5699999999999999999999999999999999999997 4699999
Q ss_pred eCCCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCc---eeEEEcCC
Q 041916 79 HSGGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHA---KTLDFSQK 152 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i---~~~~~s~~ 152 (359)
|.|.++.+||+..... ...+.+|...|+.+.|+ .+++++++.|.+|++|++.+++.++++.++- .|+.+...
T Consensus 294 SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~r 371 (499)
T KOG0281|consen 294 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 371 (499)
T ss_pred cCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhccCe
Confidence 9999999999987653 34466999999999985 5699999999999999999999999997654 44444333
Q ss_pred ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916 153 GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 153 gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~ 228 (359)
-++++++|++|++||...+ .++..+.+|.. -|.++.|.. +. +++|+.||.+++|+++
T Consensus 372 lvVSGSSDntIRlwdi~~G-~cLRvLeGHEe----LvRciRFd~--kr------------IVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 372 LVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVRCIRFDN--KR------------IVSGAYDGKIKVWDLQ 428 (499)
T ss_pred EEEecCCCceEEEEecccc-HHHHHHhchHH----hhhheeecC--ce------------eeeccccceEEEEecc
Confidence 2778889999999998776 78889999966 799999974 33 4455666666666654
No 43
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=212.90 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=184.5
Q ss_pred cEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 10 TELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
..++++.+|+.. +++.|.| .+.+|++++.|+.|+||++.. +.++++|.+|..+|..++|+++|..+++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 357889999986 9999999 789999999999999999987 8899999999999999999999999999999999999
Q ss_pred EeCCCCcceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcC
Q 041916 87 WKPTTAAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTG 160 (359)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d 160 (359)
||+.+|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+ -+.|..+.|-++| +++.+.|
T Consensus 285 wDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 99999999988863 3467899999988 88999999999999999999999888 3678999999999 8888899
Q ss_pred CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE------------------------------
Q 041916 161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS------------------------------ 210 (359)
Q Consensus 161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~------------------------------ 210 (359)
+.++||+.... .++.....+ ....+.++..+|++.++++-+.|..+
T Consensus 364 ks~riWe~~~~-v~ik~i~~~---~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 364 KSVRIWENRIP-VPIKNIADP---EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred ccEEEEEcCCC-ccchhhcch---hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99999996655 233222222 11267788889999888877766633
Q ss_pred -----EEEEcCCCCCccccccCCCc
Q 041916 211 -----SILVPGSGEPNFDSWVANPF 230 (359)
Q Consensus 211 -----~i~~~~~~d~~~~~~~~~~~ 230 (359)
..+++|.++|.+.+|+.++.
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhh
Confidence 34789999999999998754
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=1.8e-28 Score=195.92 Aligned_cols=209 Identities=18% Similarity=0.286 Sum_probs=177.2
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
-+||| .+|.+++.|.+-.-+.+++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|++++
T Consensus 83 akvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec
Confidence 36899 899999998654445999999999999999999999999998754 5678899999999999998888999999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eE
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LL 155 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~ 155 (359)
.|++|++||.+++..+.++. .+.+|+++.++++|.+|.++ ..+.|.+||..+..++..+ +..|.+.+++|+. ++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fV 240 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFV 240 (334)
T ss_pred cCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEE
Confidence 99999999999999998886 46789999999999877665 4578999999999999888 6678999999987 77
Q ss_pred EEEcCCcEEEEcCCCCCCcccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
+++.|..++.||..++. .+..+ .+|.+ +|.++.|+|+|...++|+.||++++|.+..
T Consensus 241 aGged~~~~kfDy~Tge-Ei~~~nkgh~g----pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 241 AGGEDFKVYKFDYNTGE-EIGSYNKGHFG----PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ecCcceEEEEEeccCCc-eeeecccCCCC----ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 77889999999988884 44444 56644 999999999998777777776666665543
No 45
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.7e-28 Score=204.30 Aligned_cols=211 Identities=19% Similarity=0.230 Sum_probs=174.7
Q ss_pred EEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-
Q 041916 12 LHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK- 88 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd- 88 (359)
+..|.+|.+- .|++=+|.. ..++||+.||.|+|||+.+..+...+.+|.+.|..|++.. ..+++++.|.+|+.|-
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 4567888875 999999976 7899999999999999999999999999999999999876 5566777777666664
Q ss_pred -------------------------------------CCCCcceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 041916 89 -------------------------------------PTTAAPLIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWD 130 (359)
Q Consensus 89 -------------------------------------~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd 130 (359)
..-..|+..+....+.|.++.|+|- ...|++|+.|+.|.+||
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 3333455556655677899999994 45678888999999999
Q ss_pred cCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 131 LRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 131 ~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
+|++.+++.+ ....+.|+|+|.+ +++++.|..++.||++.-..++..+.+|.. .|.++.|+|.|+-+++|+.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs----AV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS----AVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccce----eEEEeccCCCcchhccccc
Confidence 9999998877 5567899999977 778889999999999888788888888865 8999999999999999988
Q ss_pred CCeEEE-------------------------------EEcCCCCCccccccCC
Q 041916 207 MGWSSI-------------------------------LVPGSGEPNFDSWVAN 228 (359)
Q Consensus 207 dg~~~i-------------------------------~~~~~~d~~~~~~~~~ 228 (359)
|..++| +++|++|+++++|..+
T Consensus 293 DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 886665 4667777777777654
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.9e-27 Score=210.62 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=182.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNP-FNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp-~~~~l~ 76 (359)
.|+||+ .++..++.|..|.+- +|++.+|.-.+++|+|.|-+|++||...+ .+.++|.+|..-|.+++|+| |.+.+|
T Consensus 78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 489999 999999999999997 99999999999999999999999999764 68889999999999999999 568999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQ 151 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~ 151 (359)
++|-|++|++|.+.+..+..++.+|...|+|+.+-+ |-.+|++|+.|.+|++||..+..|++++.| .|+.+.|+|
T Consensus 158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 999999999999999999999999999999999987 447999999999999999999999999965 478999999
Q ss_pred Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
.- +++|+.||+++||+..+- .....+. . ....+++++-.+.+..+++|...|.+.+
T Consensus 238 ~lpiiisgsEDGTvriWhs~Ty-~lE~tLn-~---gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 238 ELPIIISGSEDGTVRIWNSKTY-KLEKTLN-Y---GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCcEEEEecCCccEEEecCcce-ehhhhhh-c---CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 88 788899999999995543 2222222 2 2338999999999999999999996544
No 47
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=9.3e-27 Score=201.11 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=185.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
++.||| .+|+....+.-|..+ ..+.|-.+. -+++++.|+.|+|+-+....++.++.+|.++|.+|.|+|.|.+|+++
T Consensus 299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred cEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 467999 899999999999998 889998654 57889999999999999889999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---------CCEEEEEeCCCeEEEEEcCCceeeEec---cCCcee
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---------GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKT 146 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---------~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~ 146 (359)
|.|++++||.+........+++|...|..+.|+|+ +..+++++.|++|++||+..+.+++.| ..+|.+
T Consensus 378 SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys 457 (524)
T KOG0273|consen 378 SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS 457 (524)
T ss_pred cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE
Confidence 99999999999999999999999999999999984 457999999999999999999999999 458999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++|||+| +++++.||.|.+|+..++ ..+..+.+.. .|..++|+.+|+.|.++-.||.+.++.
T Consensus 458 vafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~~~~-----~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 458 VAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQGTG-----GIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EEecCCCcEEEecCCCCeeEeccccch-heeEeecCCC-----eEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 9999999 677788999999998776 5666666543 599999999999999999998776654
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-27 Score=190.42 Aligned_cols=211 Identities=14% Similarity=0.221 Sum_probs=176.4
Q ss_pred CeEEEe--CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEE
Q 041916 1 YPYIYN--RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-NGVV 75 (359)
Q Consensus 1 ~v~iwd--~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l 75 (359)
+++||| ....+++.++.|..- .++.|++ ++..++++|.|++|++|+...++.+.++.+|...|...+|+|. .+++
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE
Confidence 478999 455689999999885 9999998 4677888899999999999999999999999999999999994 6899
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEeccC---CceeEEEc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTLPG---HAKTLDFS 150 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~---~i~~~~~s 150 (359)
+++|.||++++||++..-....+..|...|.+..|+. +.+.++||+.|+.|+.||+|+. .++..+.+ .|..+.||
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence 9999999999999987655555899999999999998 6677999999999999999985 46777744 48999999
Q ss_pred CCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEEcCCCeEEEEEc
Q 041916 151 QKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 151 ~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~~dg~~~i~~~ 215 (359)
|.. +++++.|=+++|||.......+..+.-|+. -+..+.|++. +.+++.++-|+.+.+|.+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE----Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE----FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccce----EEeccccccccCceeeecccccceeeecc
Confidence 987 778889999999998877677777777754 7889999885 345666555555554443
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=4.5e-26 Score=226.29 Aligned_cols=211 Identities=18% Similarity=0.233 Sum_probs=172.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN-PFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~ 76 (359)
+|+||| .++..+..+.+|.+. ++++|+| ++.+|++|+.||+|++||+.++..+..+..+ ..+.++.|+ +++.+|+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence 489999 888899999999886 9999997 7899999999999999999999988888765 679999995 5789999
Q ss_pred EEeCCCeEEEEeCCCCc-ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc------eeeEecc---CCcee
Q 041916 77 LGHSGGTVTMWKPTTAA-PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY------EVLQTLP---GHAKT 146 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~---~~i~~ 146 (359)
+|+.||.|++||+++.. ++..+.+|...|+++.|. ++.+|++++.|++|++||++.+ .++..+. ..+.+
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999998765 567788999999999997 7889999999999999999853 4566663 45788
Q ss_pred EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceee--------ccc-CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYM--------GHS-MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~-~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++|+|++ +++++.|+.|.+|+.... .+...+. +.. ..+...|.+++|+|++..|++|+.+|.+.+|.
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFP-MPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCC-CceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9999998 777888999999996543 1111110 000 00234699999999999998888887766653
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=9.7e-27 Score=196.08 Aligned_cols=209 Identities=18% Similarity=0.285 Sum_probs=171.8
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEe-cC--CCEEEEEecCCeEEEEECCCCeE----EEEEecCCCCeEEEEEcCCC
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFL-RN--HFLLASINKFGQLRYQDVTMGEI----VGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s-~~--~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~ 72 (359)
.++|||..|++.+++.+|.++ .+++|. ++ ...|++++.|.++++|-...+.. +....+|..+|.++...++|
T Consensus 126 ~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg 205 (423)
T KOG0313|consen 126 TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG 205 (423)
T ss_pred eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC
Confidence 368999999999999999998 766664 33 34699999999999999987753 33445999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCC-------------------------CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916 73 GVVSLGHSGGTVTMWKPT-------------------------TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIK 127 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~-------------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~ 127 (359)
..+++|+.|.+|.+|+.. ++.|+.++.+|..+|.++.|++ ...+++++.|.+|+
T Consensus 206 tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk 284 (423)
T KOG0313|consen 206 TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIK 284 (423)
T ss_pred CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEE
Confidence 999999999999999921 2346778899999999999988 67899999999999
Q ss_pred EEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC--CccceeecccCCCCcceEEEEEeeCCCE-
Q 041916 128 IWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS--HNYSRYMGHSMVKGYQIGKVSFRPYEDV- 200 (359)
Q Consensus 128 iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~- 200 (359)
.||+.++..+.++ +..+.+++.+|.. +++++.|..|++||++++. .....+.+|.. .|.++.|+|...+
T Consensus 285 ~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~n----wVssvkwsp~~~~~ 360 (423)
T KOG0313|consen 285 VWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKN----WVSSVKWSPTNEFQ 360 (423)
T ss_pred EEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchh----hhhheecCCCCceE
Confidence 9999999988877 5578999999987 6677789999999988753 34467788866 9999999998764
Q ss_pred EEEEcCCCeEEEEE
Q 041916 201 LGIGHSMGWSSILV 214 (359)
Q Consensus 201 l~~~~~dg~~~i~~ 214 (359)
|++|+.|+.+.+|.
T Consensus 361 ~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 361 LVSGSYDNTVKLWD 374 (423)
T ss_pred EEEEecCCeEEEEE
Confidence 44444555444443
No 51
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=3.6e-27 Score=203.03 Aligned_cols=202 Identities=18% Similarity=0.250 Sum_probs=165.6
Q ss_pred EeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe-------EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 14 CLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE-------IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
.|.+|..- ++|+|++. .-+|++++.|+.|++||+.... +...+.+|...|..++|+|-. .+|++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 78899995 99999996 4678999999999999997532 456788999999999999954 68899999999
Q ss_pred EEEEeCC--CCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEecc---CCceeEEEcCCc---
Q 041916 84 VTMWKPT--TAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTLP---GHAKTLDFSQKG--- 153 (359)
Q Consensus 84 v~lwd~~--~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~---~~i~~~~~s~~g--- 153 (359)
+.|||++ +.++.....+|.+.|+|++|+| ++..|||||.|++|.+||+|+. .+++++. ..|.++.|||+.
T Consensus 252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv 331 (422)
T KOG0264|consen 252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV 331 (422)
T ss_pred EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence 9999999 5566777889999999999999 6677999999999999999985 4677774 468999999987
Q ss_pred eEEEEcCCcEEEEcCCCCC----------CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccc
Q 041916 154 LLAVGTGSFVQILGDFSGS----------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFD 223 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~ 223 (359)
++++|.|+.+.+||+..-+ .+...+..|.+ |...|..+.|+|+..+++ .+.+.|+.+.
T Consensus 332 LASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgG-H~~kV~DfsWnp~ePW~I-----------~SvaeDN~Lq 399 (422)
T KOG0264|consen 332 LASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGG-HTAKVSDFSWNPNEPWTI-----------ASVAEDNILQ 399 (422)
T ss_pred eEecccCCcEEEEeccccccccChhhhccCCcceeEEecC-cccccccccCCCCCCeEE-----------EEecCCceEE
Confidence 6667789999999975422 23455667776 777999999999998653 3455566666
Q ss_pred cccC
Q 041916 224 SWVA 227 (359)
Q Consensus 224 ~~~~ 227 (359)
+|.+
T Consensus 400 IW~~ 403 (422)
T KOG0264|consen 400 IWQM 403 (422)
T ss_pred Eeec
Confidence 6765
No 52
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=5e-28 Score=200.20 Aligned_cols=223 Identities=16% Similarity=0.188 Sum_probs=186.7
Q ss_pred CeEEEe-CCCcEEEEec--------cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc
Q 041916 1 YPYIYN-RDGTELHCLK--------EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVN 69 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~--------~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s 69 (359)
+|.+|| .+|+....++ -+..+ .|++||.|...||+|+.||.|++|.+.+|.|++.|. .|...|+|+.||
T Consensus 236 FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FS 315 (508)
T KOG0275|consen 236 FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFS 315 (508)
T ss_pred eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEc
Confidence 367999 8887654443 34555 999999999999999999999999999999999997 899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCc
Q 041916 70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHA 144 (359)
Q Consensus 70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i 144 (359)
.|+..+++++.|.++++--+.+|+++..+.+|.+.|+...|.+||+++++++.||+|++|+..+..|+.+|. .+|
T Consensus 316 rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~v 395 (508)
T KOG0275|consen 316 RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPV 395 (508)
T ss_pred cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999982 367
Q ss_pred eeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc--CCCC
Q 041916 145 KTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP--GSGE 219 (359)
Q Consensus 145 ~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~--~~~d 219 (359)
.++-.-|.. +++|...++|+|.++. + +.+..+..-. ..++...+++.+|.|.++.+.+.|+...-|.. |.-+
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~q-G-QvVrsfsSGk-REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQ-G-QVVRSFSSGK-REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEecc-c-eEEeeeccCC-ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 888887766 8888888999999853 3 4444443322 24557788899999999999999997665543 3334
Q ss_pred Ccccccc
Q 041916 220 PNFDSWV 226 (359)
Q Consensus 220 ~~~~~~~ 226 (359)
..+.+-+
T Consensus 473 ~tl~VhE 479 (508)
T KOG0275|consen 473 RTLPVHE 479 (508)
T ss_pred eeeeccc
Confidence 4444433
No 53
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.6e-26 Score=206.11 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=172.2
Q ss_pred CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-----------------------
Q 041916 1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN----------------------- 55 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------- 55 (359)
.||+|+ .+|........+.. ++++.|+++|.+||+|..+|.|.|||..+.+.+..
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGs 277 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGS 277 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEec
Confidence 489999 77775554444344 59999999999999999999999999753221111
Q ss_pred -------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCC
Q 041916 56 -------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGH 115 (359)
Q Consensus 56 -------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~ 115 (359)
+.+|...|..+.|++|+.++|+|+.|+.+.|||.....+...+..|...|.+++|+| ...
T Consensus 278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 346888899999999999999999999999999988899999999999999999999 677
Q ss_pred EEEEEe--CCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE--cCCcEEEEcCCCCCCccceeecccCCCCc
Q 041916 116 LMATSG--KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMVKGY 187 (359)
Q Consensus 116 ~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 187 (359)
+||+|+ .|+.|++||..++..+... .+.|.+|.|++.. ++++- .++.|.||+..+. ..+..+.+|..
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~---- 432 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTS---- 432 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcc----
Confidence 888875 6999999999999999888 5689999999998 55543 4689999997664 67788888876
Q ss_pred ceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 188 QIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 188 ~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.|..++++|||..+++|+.|.++++|
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFW 458 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEec
Confidence 89999999999888775555544443
No 54
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.2e-27 Score=213.20 Aligned_cols=208 Identities=16% Similarity=0.239 Sum_probs=177.2
Q ss_pred CeEEEe-CCC----cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeE-----EE----EEecCCCCeE
Q 041916 1 YPYIYN-RDG----TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEI-----VG----NFRTGLGRTD 64 (359)
Q Consensus 1 ~v~iwd-~~g----~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~-----~~----~~~~~~~~v~ 64 (359)
+|++|. .++ .++....+|... .+++++..+ .+|+++|.|++|++|++...+. +. ....|...|+
T Consensus 388 svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred eEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 478884 222 245667789887 999997755 7899999999999999976221 11 2346999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC--
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG-- 142 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-- 142 (359)
|++.+|+..+||+||.|.+.+||++.+...+.++.+|...|.|+.|+|..+.++|+|.|++|+||.+.++.++.+|.|
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~ 547 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHT 547 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred -CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 143 -HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 143 -~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.|..+.|-.+| +++++.||-|++|++.++ .+...+..|.. .|++++.+|.+.++++|+.||.+.+|
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~-eC~~tlD~H~D----rvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTN-ECEMTLDAHND----RVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccch-hhhhhhhhccc----eeEEEeecCccceeEecCCCeEEEEe
Confidence 47788898888 999999999999998777 78899999976 99999999999777666666544443
No 55
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.6e-27 Score=214.26 Aligned_cols=216 Identities=16% Similarity=0.239 Sum_probs=171.8
Q ss_pred EEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--------------------------------C--------
Q 041916 13 HCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--------------------------------G-------- 50 (359)
Q Consensus 13 ~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~-------- 50 (359)
..+. .|.+. +++.||+||+|||+||.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 78887 9999999999999999999999998754 0
Q ss_pred --------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEE
Q 041916 51 --------------------EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAF 110 (359)
Q Consensus 51 --------------------~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~ 110 (359)
+++..|.+|.+.|..+.||.+ ++|++++.|.+|+||++....++..| .|.+.|+||+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEe
Confidence 122236789999999999975 58999999999999999999999888 49999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeec--ccC
Q 041916 111 HP-NGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMG--HSM 183 (359)
Q Consensus 111 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~ 183 (359)
+| |.+||++|+-||.|+||++...+.+.-. ..-|++++|+|+| .++|+.+|.+++|+.... +....... +..
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeeccC
Confidence 99 8899999999999999999987766544 6679999999999 778889999999995443 33222211 100
Q ss_pred --CCCcceEEEEEeeCCC-EEEEEcCCCeEEE--------------------------------EEcCCCCCccccccCC
Q 041916 184 --VKGYQIGKVSFRPYED-VLGIGHSMGWSSI--------------------------------LVPGSGEPNFDSWVAN 228 (359)
Q Consensus 184 --~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i--------------------------------~~~~~~d~~~~~~~~~ 228 (359)
..+..|+++.|.|... .|++.+.|..++| +++++.|..|.+|+..
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 0122799999997544 4666677765554 6778899999999975
Q ss_pred Ccc
Q 041916 229 PFE 231 (359)
Q Consensus 229 ~~~ 231 (359)
.+.
T Consensus 577 ~~~ 579 (712)
T KOG0283|consen 577 SFN 579 (712)
T ss_pred CCc
Confidence 544
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.3e-27 Score=187.55 Aligned_cols=200 Identities=19% Similarity=0.323 Sum_probs=166.5
Q ss_pred EEEeccCCCeEEEEEecCC-CEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 041916 12 LHCLKEHGAVLKLQFLRNH-FLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 12 ~~~l~~h~~~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd 88 (359)
...+.-..+...++|+++. +.+++++.||++++||+.. ..++..++.|...|.++.|++- +..++++|.||+|++|+
T Consensus 54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 3444455556999999975 6788899999999999643 3578889999999999999985 46788889999999999
Q ss_pred CCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc---eEEEEcC
Q 041916 89 PTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG---LLAVGTG 160 (359)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g---l~~~~~d 160 (359)
++-++.+.++.+|..-|...+|+| .+++++++|.|+++++||++.. +.+. + ...+.++.|+.-. +++++.|
T Consensus 134 ~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 134 PNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred CCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCC
Confidence 999999999999999999999999 7889999999999999999873 4333 4 3478999999865 7788899
Q ss_pred CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
+.|++||+++-..++..+.+|.. .|..+.|+|... .++.+++.|.++++|+.
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~----AVRkvk~Sph~~-----------~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGL----AVRKVKFSPHHA-----------SLLASASYDMTVRIWDP 264 (311)
T ss_pred ceEEEEehhhccccceeecCCce----EEEEEecCcchh-----------hHhhhccccceEEeccc
Confidence 99999999988778888888876 999999999764 44555666666666664
No 57
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=1.6e-26 Score=190.19 Aligned_cols=204 Identities=14% Similarity=0.264 Sum_probs=170.2
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC------------C------eEEEEEecCCCCeEEEEEcCCC
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM------------G------EIVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~~~~v~~~~~sp~~ 72 (359)
-..+..|..+ .+.+|+|||.++|+|+.|.+|+|+|+.. | -.++++..|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 4567789998 9999999999999999999999999861 1 2567788899999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCc
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHA 144 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i 144 (359)
.+|++|+.|++|++||+........+. ....+|++|+|+|.|.+|++|..-.++++||+.+.++...- .+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 999999999999999987543322222 23457999999999999999999999999999998875544 4679
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+++.+|+.| +++++.||.|++||-.++ .++..+ ..| .++.|.+..|..+|+|+++.+.|..+.+|-.+++.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH---~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSN-RCVRTIGNAH---GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccH-HHHHHHHhhc---CCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 999999999 778899999999997666 455544 455 46789999999999999998888888887655543
No 58
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=213.78 Aligned_cols=210 Identities=14% Similarity=0.182 Sum_probs=182.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|++|| +-|.++..|..|.++ +.++|+|++.+++|||.|-.|++|+..+.+++.++.+|...|..+.|++.-..|+|+
T Consensus 32 ~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred eeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEc
Confidence 378999 899999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----------------------
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE----------------------- 135 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~----------------------- 135 (359)
|+|.+|+||+..+++++..+.+|...|.|..|+|....++++|-|.+|++||+...+
T Consensus 112 SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLf 191 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLF 191 (1202)
T ss_pred cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhc
Confidence 999999999999999999999999999999999999999999999999999985311
Q ss_pred ----e-e-EeccC---CceeEEEcCCc--eEEEEcCCcEEEEcCCCCC-CccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 136 ----V-L-QTLPG---HAKTLDFSQKG--LLAVGTGSFVQILGDFSGS-HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 136 ----~-~-~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
. + +.+.| .|+-++|+|.- +++++.|..|++|.+.... =.+.+..+|.. +|.++-|+|..+.+++
T Consensus 192 g~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n----nVssvlfhp~q~lIlS 267 (1202)
T KOG0292|consen 192 GQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN----NVSSVLFHPHQDLILS 267 (1202)
T ss_pred CCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC----CcceEEecCccceeEe
Confidence 0 0 11123 46788999987 7778888999999864431 12345667765 8999999999988888
Q ss_pred EcCCCeEEEEE
Q 041916 204 GHSMGWSSILV 214 (359)
Q Consensus 204 ~~~dg~~~i~~ 214 (359)
.+.|+.+++|.
T Consensus 268 nsEDksirVwD 278 (1202)
T KOG0292|consen 268 NSEDKSIRVWD 278 (1202)
T ss_pred cCCCccEEEEe
Confidence 88888777653
No 59
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.2e-26 Score=187.06 Aligned_cols=196 Identities=18% Similarity=0.312 Sum_probs=149.6
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEe
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--VVSLGHSGGTVTMWK 88 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~sg~~dg~v~lwd 88 (359)
+..+..|.+. ++++.+ +.++|+||.|-+|+|||+.....+..+-.|.+.|+++.|.+.-. .|++|+.||.|.+|+
T Consensus 36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 4556788887 999884 78999999999999999999999999999999999999998764 899999999999999
Q ss_pred CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCC-----------------------
Q 041916 89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGH----------------------- 143 (359)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~----------------------- 143 (359)
......+.++.+|.+.|+.++++|.|++.++.+.|+.+++||+-.|+.-..+ ...
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i 193 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDI 193 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEE
Confidence 9999999999999999999999999999999999999999999776532222 222
Q ss_pred -----------------ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE--eeCCCEEEE
Q 041916 144 -----------------AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF--RPYEDVLGI 203 (359)
Q Consensus 144 -----------------i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~ 203 (359)
+.++.|...+ +++++.++.|.+||... ..+...+.+|.. .|-++.+ .|++.+|++
T Consensus 194 ~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~----RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 194 YQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHEN----RVKDIASYTNPEHEYLVT 268 (362)
T ss_pred EecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC-Cccceeeecchh----heeeeEEEecCCceEEEE
Confidence 2333344444 55555566666666433 355556666654 6666653 244555555
Q ss_pred EcCCCeEEEEE
Q 041916 204 GHSMGWSSILV 214 (359)
Q Consensus 204 ~~~dg~~~i~~ 214 (359)
+++||.+.+|.
T Consensus 269 aSSDG~I~vWd 279 (362)
T KOG0294|consen 269 ASSDGFIKVWD 279 (362)
T ss_pred eccCceEEEEE
Confidence 55555444443
No 60
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.3e-26 Score=206.72 Aligned_cols=214 Identities=18% Similarity=0.221 Sum_probs=178.7
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCC-CE
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPFN-GV 74 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~-~~ 74 (359)
.+++|+..+..-..+.+|.+. .+++...+|-+|+||+.|.++++|.+..+ -++....+|...|.+++++..+ .+
T Consensus 347 ~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asf 426 (775)
T KOG0319|consen 347 ELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASF 426 (775)
T ss_pred ceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccE
Confidence 367888444444589999998 99997677889999999999999987443 2566778999999999997765 68
Q ss_pred EEEEeCCCeEEEEeCCCCc----c-eE----EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---
Q 041916 75 VSLGHSGGTVTMWKPTTAA----P-LI----KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG--- 142 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~----~-~~----~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--- 142 (359)
|+++|.|+++++|++...+ + .. +..+|...|++++++|+..++||||.|.+.++|++.....+.++.+
T Consensus 427 fvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R 506 (775)
T KOG0319|consen 427 FVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR 506 (775)
T ss_pred EEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCcc
Confidence 9999999999999987521 1 11 2347999999999999999999999999999999998888888855
Q ss_pred CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 143 HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 143 ~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
.+.++.|+|.. +++++.|.+|+||.+.+. .++.++.+|.. .|..+.|-.++..|++++.||.+++|..-..+
T Consensus 507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~f-SClkT~eGH~~----aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTF-SCLKTFEGHTS----AVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ceEEEEeccccceeEeccCCceEEEEEeccc-eeeeeecCccc----eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 58999999987 788889999999998776 78999999977 89999999999988888888777766654443
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=3.1e-25 Score=179.05 Aligned_cols=208 Identities=15% Similarity=0.205 Sum_probs=174.7
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+.||- .+|+.+-++.+|.+. +|+..+-+..+|++|+.|.++++||+.+|+++..++.. .+|..+.|+++|++++...
T Consensus 34 ~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~t 112 (327)
T KOG0643|consen 34 PTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILAST 112 (327)
T ss_pred ceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEe
Confidence 45787 799999999999998 99999999999999999999999999999999999854 7899999999999887764
Q ss_pred -----CCCeEEEEeCC-------CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCC
Q 041916 80 -----SGGTVTMWKPT-------TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGH 143 (359)
Q Consensus 80 -----~dg~v~lwd~~-------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~ 143 (359)
..+.|.++|++ ...|...+..+.+.++.+.|.|-+.+|++|..||.|..||++++..+..- ...
T Consensus 113 D~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~ 192 (327)
T KOG0643|consen 113 DKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK 192 (327)
T ss_pred hhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc
Confidence 34679999988 45678888889999999999999999999999999999999998554332 568
Q ss_pred ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC------------------------------------------------
Q 041916 144 AKTLDFSQKG--LLAVGTGSFVQILGDFSGSH------------------------------------------------ 173 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~------------------------------------------------ 173 (359)
|+.|+++|+. +++++.|.+-++||..+-..
T Consensus 193 Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy 272 (327)
T KOG0643|consen 193 INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY 272 (327)
T ss_pred cccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence 9999999999 88899999999999654210
Q ss_pred ------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 174 ------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 174 ------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+..+.+| -++|++++|+|+|+..++|+.||.+++..
T Consensus 273 h~i~eEEigrvkGH----FGPINsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 273 HLIFEEEIGRVKGH----FGPINSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred HHHHHHHhcccccc----ccCcceeEECCCCcccccCCCCceEEEEE
Confidence 01112234 34899999999999888888888877764
No 62
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.3e-25 Score=181.10 Aligned_cols=216 Identities=16% Similarity=0.262 Sum_probs=177.6
Q ss_pred EEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeC
Q 041916 13 HCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS--GGTVTMWKP 89 (359)
Q Consensus 13 ~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~--dg~v~lwd~ 89 (359)
+.++...+ ++++.|+++|.+|++++.|.+|++||..+|+.+.++..+.-.|..++|......++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 44555344 499999999999999999999999999999999999999888999999776666666665 889999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCceeEEEcCCc-eEEEEcCC-cEEEE
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHAKTLDFSQKG-LLAVGTGS-FVQIL 166 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i~~~~~s~~g-l~~~~~d~-~i~i~ 166 (359)
.+.+.++.|.+|...|++|+.+|-+..+++++.|++|++||+|..++...+. ..-..++|+|.| +++++.++ .|++|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEE
Confidence 9999999999999999999999988999999999999999999888776663 345678999999 66666554 99999
Q ss_pred cCCCC-CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE---------------------------------
Q 041916 167 GDFSG-SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI--------------------------------- 212 (359)
Q Consensus 167 d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i--------------------------------- 212 (359)
|++.- ..+...+.-... .....+.+.|+|+|++|+.++..+.+.+
T Consensus 168 D~Rs~dkgPF~tf~i~~~-~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 168 DLRSFDKGPFTTFSITDN-DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred EecccCCCCceeEccCCC-CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 98764 233333332211 3447899999999999999888874433
Q ss_pred EEcCCCCCccccccCCC
Q 041916 213 LVPGSGEPNFDSWVANP 229 (359)
Q Consensus 213 ~~~~~~d~~~~~~~~~~ 229 (359)
+++|++|+.+.+|++..
T Consensus 247 vl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEEecCCCcEEEEEcCC
Confidence 67788899999999853
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-26 Score=211.26 Aligned_cols=210 Identities=16% Similarity=0.247 Sum_probs=184.3
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
.+.+++|+|....++++-.+|.|++||.+-+.++..|..|.++|..++|+|.+.+++||++|..|++|+..+.+++.++.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~ 90 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL 90 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc--eEEEEcCCcEEEEcCCCCC--
Q 041916 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG--LLAVGTGSFVQILGDFSGS-- 172 (359)
Q Consensus 100 ~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~-- 172 (359)
+|-+.|+.+.|++.-.+|+++|.|.+|+||+..+.+++..+.| .|.|..|+|.. +++++-|-+|+|||+..-.
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence 9999999999999999999999999999999999999999965 48999999966 8889999999999963210
Q ss_pred -C-------------------------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE--------------
Q 041916 173 -H-------------------------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI-------------- 212 (359)
Q Consensus 173 -~-------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i-------------- 212 (359)
. ....+.+| +..|+-++|+|.-.++++|++|..+++
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH----DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtc 246 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH----DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTC 246 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeeccc----ccccceEEecCCcceEEecCCcceeeEEEeccccceeehhh
Confidence 0 01123344 347999999999999999999996655
Q ss_pred ------------------EEcCCCCCccccccCCCccCh
Q 041916 213 ------------------LVPGSGEPNFDSWVANPFETS 233 (359)
Q Consensus 213 ------------------~~~~~~d~~~~~~~~~~~~~~ 233 (359)
+.+.+.|++|++|+++.-...
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 577889999999998754433
No 64
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=8.8e-25 Score=203.68 Aligned_cols=192 Identities=17% Similarity=0.231 Sum_probs=153.0
Q ss_pred EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc--------ceEEEeccCCCeE
Q 041916 36 INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTAA--------PLIKMLCHQGPVS 106 (359)
Q Consensus 36 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~--------~~~~~~~h~~~v~ 106 (359)
|+.++.|++|++.....+..+.+|.++|.+++|+|+ +.+|++|+.||+|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 566889999999887888899999999999999997 7899999999999999997642 3456789999999
Q ss_pred EEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916 107 ALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181 (359)
Q Consensus 107 ~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 181 (359)
+++|+|++.. |++++.|++|++||++++..+..+ ...|.+++|+|+| +++++.|+.|+|||++++ ..+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ-EIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC-cEEEEEecc
Confidence 9999998876 578999999999999998876665 5579999999999 555667999999998776 566677777
Q ss_pred cCCC-CcceEEEEEeeCCCEEEEEcCCC----eEE---------------------------------EEEcCCCCCccc
Q 041916 182 SMVK-GYQIGKVSFRPYEDVLGIGHSMG----WSS---------------------------------ILVPGSGEPNFD 223 (359)
Q Consensus 182 ~~~~-~~~v~~~~~~p~~~~l~~~~~dg----~~~---------------------------------i~~~~~~d~~~~ 223 (359)
.... ...+....|++++.+|++++.++ .+. ++++|++|++++
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 5400 01123334568888888876553 222 256778999999
Q ss_pred cccCC
Q 041916 224 SWVAN 228 (359)
Q Consensus 224 ~~~~~ 228 (359)
+|++.
T Consensus 289 ~~e~~ 293 (568)
T PTZ00420 289 YYQHS 293 (568)
T ss_pred EEEcc
Confidence 99984
No 65
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.3e-25 Score=196.01 Aligned_cols=209 Identities=16% Similarity=0.216 Sum_probs=161.6
Q ss_pred eEEEeCCCcEEEEe-------------ccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeE-EEEEe-----cCC
Q 041916 2 PYIYNRDGTELHCL-------------KEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEI-VGNFR-----TGL 60 (359)
Q Consensus 2 v~iwd~~g~~~~~l-------------~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~ 60 (359)
.+|+|++|.++..+ ++|... +|.+|+|+. ..++|++.||+++|||+...+. +..+. +..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 46788888765433 467776 999999974 6789999999999999986542 23333 233
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc--ceE-EEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-
Q 041916 61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA--PLI-KMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKY- 134 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~--~~~-~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~- 134 (359)
-+++.++|+|+|..||+|+.||.|.+|+..... +.. .-.+|.. .|+||+||+||++|++-|.|+++++||+|..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc
Confidence 478999999999999999999999999975432 222 2347887 8999999999999999999999999999985
Q ss_pred eeeEecc-----CCceeEEEcCCc--eEEEEc------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 135 EVLQTLP-----GHAKTLDFSQKG--LLAVGT------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 135 ~~~~~~~-----~~i~~~~~s~~g--l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
+++.... -+-+.++|||+. ++++.+ .|.+.+||..+- ..++.+.-. +..|..+.|+|--+.+
T Consensus 398 kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~-d~v~ki~i~----~aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 398 KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL-DTVYKIDIS----TASVVRCLWHPKLNQI 472 (641)
T ss_pred cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce-eeEEEecCC----CceEEEEeecchhhhe
Confidence 4666552 245889999999 455432 378999996554 333333322 3489999999999999
Q ss_pred EEEcCCCeEEEEEc
Q 041916 202 GIGHSMGWSSILVP 215 (359)
Q Consensus 202 ~~~~~dg~~~i~~~ 215 (359)
.+|+.||.+++++.
T Consensus 473 ~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 473 FAGSGDGTAHVYYD 486 (641)
T ss_pred eeecCCCceEEEEC
Confidence 99999999888874
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=193.07 Aligned_cols=205 Identities=20% Similarity=0.324 Sum_probs=169.5
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~ 76 (359)
.|+||| .+...+..+.+|..+ ..+.|+|++ ..|++|++|+.+++||+.+......+.+|.+.|.|.+|+|.+ .+++
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 377888 555567888999998 999999964 678889999999999999988777899999999999999965 5899
Q ss_pred EEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCceeEEEcC
Q 041916 77 LGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHAKTLDFSQ 151 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s~ 151 (359)
+||.||.|++||+++. ..+.++ .|..+|.++.+-|.|..|++++. ..|++||+.+|. .+..+ ...|+|+.+..
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 9999999999999987 445554 58889999999999999999986 589999999654 33333 44689999999
Q ss_pred Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++ ++++|-|+.+++||+ +..+.+..+. .. ++|.+++.+|+++.+++|..+|.+.+-
T Consensus 249 ~~~rLlS~sLD~~VKVfd~-t~~Kvv~s~~-~~----~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDT-TNYKVVHSWK-YP----GPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred CCceEeecccccceEEEEc-cceEEEEeee-cc----cceeeEEecCCCceEEEecccceeeee
Confidence 88 999999999999994 3323333332 22 389999999999999999999966554
No 67
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.5e-24 Score=174.80 Aligned_cols=221 Identities=19% Similarity=0.262 Sum_probs=180.5
Q ss_pred CeEEEe-CCCcEEEEeccCC-CeEEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHG-AVLKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~-~~~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|+||| .+|..++++..+. ++..++|......++.++. |.+|++.++.+.+.++.|.+|...|+.++.+|-+..++
T Consensus 37 sl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~Fl 116 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFL 116 (311)
T ss_pred eEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEE
Confidence 478999 9999999988764 4577888776666666665 88999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEec------cCCceeEE
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQTL------PGHAKTLD 148 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~------~~~i~~~~ 148 (359)
+++.|++|++||++..++...+..... ..++|+|.|-++|++.....|++||+|+. .|..++ ....+.|.
T Consensus 117 S~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~ 194 (311)
T KOG1446|consen 117 SSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE 194 (311)
T ss_pred ecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE
Confidence 999999999999998888777654333 34899999999999998889999999985 355555 23568999
Q ss_pred EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccccc
Q 041916 149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWV 226 (359)
Q Consensus 149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~ 226 (359)
|||+| ++.+...+.+++.|.-+| .....+..+.. .+.--.+.+|+||++++++|+.||.+.+|...++ ..+-.|.
T Consensus 195 FS~dGK~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~-~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg-~~v~~~~ 271 (311)
T KOG1446|consen 195 FSPDGKSILLSTNASFIYLLDAFDG-TVKSTFSGYPN-AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETG-KKVAVLR 271 (311)
T ss_pred EcCCCCEEEEEeCCCcEEEEEccCC-cEeeeEeeccC-CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCC-cEeeEec
Confidence 99999 777777899999997666 57777777754 2222367899999999999999999999987443 3344444
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=4.2e-25 Score=205.12 Aligned_cols=209 Identities=19% Similarity=0.272 Sum_probs=176.7
Q ss_pred CeEEEe-CCCcEEEE-eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHC-LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~-l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+|.+|| .++..+.+ +.+|.+. .+++|..-+.+|++|+.|.++++||+.+|.+...+.+|.+.|.++...+ ..+++
T Consensus 229 tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~s 306 (537)
T KOG0274|consen 229 TLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVS 306 (537)
T ss_pred eeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEee
Confidence 467999 88888887 9999997 9999987778999999999999999999999999999999999988654 57888
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcC-Cc
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQ-KG 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~-~g 153 (359)
|+.|.+|++|++.++..+..+.+|.++|+++..+ +.++++|+.|++|++||++++++++.+.+ .|.++.+.+ .-
T Consensus 307 gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~ 384 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENR 384 (537)
T ss_pred ccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcce
Confidence 9999999999999999999999999999999997 78999999999999999999999999954 588998888 55
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCcc
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFE 231 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~ 231 (359)
+++++.|++|++||+.+...++..+..|.. .+.++.+ .+.+|++++. |+.+++|+....+
T Consensus 385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~----~v~~l~~--~~~~Lvs~~a------------D~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTS----LVSSLLL--RDNFLVSSSA------------DGTIKLWDAEEGE 444 (537)
T ss_pred EEeeeeccceEeecCCchhhhhhhhcCCcc----ccccccc--ccceeEeccc------------cccEEEeecccCc
Confidence 999999999999998766467778888754 5544443 3555555444 4556666555443
No 69
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=2.7e-26 Score=191.47 Aligned_cols=204 Identities=15% Similarity=0.283 Sum_probs=171.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
||+||| .+|+++.++-+|.+. ..+.|+. .+++|++.|.+|.+||+.... +.+.+.+|...|+.+.|+. ++|
T Consensus 258 TvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyI 333 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYI 333 (499)
T ss_pred eEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceE
Confidence 689999 999999999999987 9999974 589999999999999998654 3455779999999999964 599
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC---ceeEEEcCC
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH---AKTLDFSQK 152 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---i~~~~~s~~ 152 (359)
+++|.|.+|++|++.++..+.++.+|...|-|+.+ .|+++++|+.|.+|++||+..|.+++.+.|+ |.++.|...
T Consensus 334 VsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~k 411 (499)
T KOG0281|consen 334 VSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 411 (499)
T ss_pred EEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCc
Confidence 99999999999999999999999999999988876 6889999999999999999999999999664 899999988
Q ss_pred ceEEEEcCCcEEEEcCCCCCCc--------cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccc
Q 041916 153 GLLAVGTGSFVQILGDFSGSHN--------YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDS 224 (359)
Q Consensus 153 gl~~~~~d~~i~i~d~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~ 224 (359)
.+++++.||+|++||+..+..+ +..+..|.+ .|..+.|... . +++.+.|.+|-+
T Consensus 412 rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsg----RVFrLQFD~f--q------------IvsssHddtILi 473 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSG----RVFRLQFDEF--Q------------IISSSHDDTILI 473 (499)
T ss_pred eeeeccccceEEEEecccccCCcccccchHHHhhhhccc----eeEEEeecce--E------------EEeccCCCeEEE
Confidence 8999999999999998776433 233444544 8999998753 2 344555666677
Q ss_pred ccCC
Q 041916 225 WVAN 228 (359)
Q Consensus 225 ~~~~ 228 (359)
|+..
T Consensus 474 WdFl 477 (499)
T KOG0281|consen 474 WDFL 477 (499)
T ss_pred EEcC
Confidence 7764
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=7.4e-25 Score=187.66 Aligned_cols=209 Identities=21% Similarity=0.281 Sum_probs=171.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG--LGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~sp~~~~l~ 76 (359)
.|+||. ....+...+..|.++ +.+..+|.|.||+++++||+..+.|+++|..+...... .-.+++.+|+|||.+|.
T Consensus 284 ~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifg 363 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFG 363 (506)
T ss_pred eEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEe
Confidence 378999 666677788889987 99999999999999999999999999999988776643 33589999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQK 152 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~ 152 (359)
+|..||.|++||+.++..+..|.+|.++|.+|+|+.+|-||++++.|+.|++||+|..+...++ ...+.+++|.+.
T Consensus 364 tgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S 443 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS 443 (506)
T ss_pred ccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999998877776 235899999999
Q ss_pred c--eEEEEcCCcEEEEcCCCC-CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 153 G--LLAVGTGSFVQILGDFSG-SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 g--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
| +.++|.+=+|++++-.+. -..+..+..|.+ ..+.+.|....+++++++.|...+++
T Consensus 444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg----~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSG----LSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred CCeEEeecceeEEEEEecccccceeeehhhhccc----ccceeeecccceEEeeccchhheEEe
Confidence 9 444444445555542111 123333444433 78899999999999888888754443
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=185.01 Aligned_cols=218 Identities=16% Similarity=0.216 Sum_probs=190.1
Q ss_pred CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916 7 RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVT 85 (359)
Q Consensus 7 ~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~ 85 (359)
.+|.=+-+|.+|.+. ++...+.+...-|+++.|-+-++||.-+|..+++|. |..-|..++|+.|.++|++|+.+..++
T Consensus 47 ~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllr 125 (334)
T KOG0278|consen 47 DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLR 125 (334)
T ss_pred CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhh
Confidence 456668899999997 888888888888999999999999999999999987 778899999999999999999999999
Q ss_pred EEeCCCCc-ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCC
Q 041916 86 MWKPTTAA-PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGS 161 (359)
Q Consensus 86 lwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~ 161 (359)
|||++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++..++++ +.+|+++.++++| +++.+..+
T Consensus 126 vfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 126 VFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred hhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCc
Confidence 99998764 56778899999999999998899999999999999999999999888 7899999999999 99999999
Q ss_pred cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEE------------------------------
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSS------------------------------ 211 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~------------------------------ 211 (359)
.|.+||..+- ..+..+.... .|.+...+|+..++++|+.|+.+.
T Consensus 206 sV~Fwdaksf-~~lKs~k~P~-----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 206 SVKFWDAKSF-GLLKSYKMPC-----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDG 279 (334)
T ss_pred eeEEeccccc-cceeeccCcc-----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCC
Confidence 9999996554 4444444332 699999999999999998887332
Q ss_pred -EEEcCCCCCccccccCCCcc
Q 041916 212 -ILVPGSGEPNFDSWVANPFE 231 (359)
Q Consensus 212 -i~~~~~~d~~~~~~~~~~~~ 231 (359)
++.+|+.||++++|..++-.
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 36889999999999987643
No 72
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4e-25 Score=208.61 Aligned_cols=209 Identities=18% Similarity=0.229 Sum_probs=173.3
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC------------------CeEEEEEecCCCCeEEEEEcCC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM------------------GEIVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~sp~ 71 (359)
.+.+...|.+. +|+.|+|||.+||+|++|+.|.||.... .+++..+.+|.+.|..++|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 35677889887 9999999999999999999999999872 1367788999999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---------C
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---------G 142 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~ 142 (359)
+.+|++++.|++|.+|+..+...+..+.+|.+.|-.++|+|-|+|||+-+.|++|++|++.++...+.+. .
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999988877766662 2
Q ss_pred CceeEEEcCCc-eEEEE-----cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-------------CC----
Q 041916 143 HAKTLDFSQKG-LLAVG-----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-------------ED---- 199 (359)
Q Consensus 143 ~i~~~~~s~~g-l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-------------~~---- 199 (359)
....+.||||| ++++. ....+.|.+ +..-..-..+.+|.. ++.+++|+|. ..
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~Iie-R~tWk~~~~LvGH~~----p~evvrFnP~lfe~~~~ng~~~~~~~~y~ 295 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIE-RGTWKVDKDLVGHSA----PVEVVRFNPKLFERNNKNGTSTQPNCYYC 295 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEe-cCCceeeeeeecCCC----ceEEEEeChHHhccccccCCccCCCcceE
Confidence 46889999999 55443 225788887 344355667888876 9999999981 11
Q ss_pred EEEEEcCCCeEEEEEcCCCCCcccc
Q 041916 200 VLGIGHSMGWSSILVPGSGEPNFDS 224 (359)
Q Consensus 200 ~l~~~~~dg~~~i~~~~~~d~~~~~ 224 (359)
++|+|+.|+.+.+|.++...+.+-+
T Consensus 296 i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 296 IAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred EEEEecCCccEEEEecCCCCchhhh
Confidence 5777888888877766555444433
No 73
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.6e-26 Score=190.05 Aligned_cols=186 Identities=15% Similarity=0.233 Sum_probs=159.5
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~ 92 (359)
+-|..|||||++|++|+-||.|.+||..+|+.... |--+..+|.|+.||.|..++|+|+.||.|++|.+.+|
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 47889999999999999999999999999975443 3346789999999999999999999999999999999
Q ss_pred cceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc--eEEEEcCCcEEEE
Q 041916 93 APLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG--LLAVGTGSFVQIL 166 (359)
Q Consensus 93 ~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~ 166 (359)
.++..|. +|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..|.+ .|+...|+++| ++++++||+|++|
T Consensus 296 ~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW 375 (508)
T KOG0275|consen 296 QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVW 375 (508)
T ss_pred hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEe
Confidence 9999998 9999999999999999999999999999999999999999954 58999999999 9999999999999
Q ss_pred cCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCe
Q 041916 167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGW 209 (359)
Q Consensus 167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~ 209 (359)
+..+. .++.++.... .+.+|+++..-|.+ ..++++.....
T Consensus 376 ~~Ktt-eC~~Tfk~~~--~d~~vnsv~~~PKnpeh~iVCNrsnt 416 (508)
T KOG0275|consen 376 HGKTT-ECLSTFKPLG--TDYPVNSVILLPKNPEHFIVCNRSNT 416 (508)
T ss_pred cCcch-hhhhhccCCC--CcccceeEEEcCCCCceEEEEcCCCe
Confidence 97766 5666665442 45578887777654 34555544443
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.9e-24 Score=196.36 Aligned_cols=250 Identities=18% Similarity=0.260 Sum_probs=198.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
.|.||+ .+++++.++... .+.+..|.|.++++++|...|.+.+||+.+...+.++++|.+.+++++.+||+..+++||
T Consensus 395 SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred cEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEec
Confidence 378999 789999999775 458999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCC-----Cc--ceEEE-----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCc
Q 041916 80 SGGTVTMWKPTT-----AA--PLIKM-----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHA 144 (359)
Q Consensus 80 ~dg~v~lwd~~~-----~~--~~~~~-----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i 144 (359)
.|.+|++||..- +. .+..+ ..-.+.|.|+++||||.+|+++=-|.+|++|-+.+.+...++ .-||
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV 553 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPV 553 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccce
Confidence 999999999531 11 11111 123567999999999999999999999999999998876666 3479
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF 222 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~ 222 (359)
.|+.+|||+ ++++|.|.+|++|-+..| .+-..+.+|.. .|.++.|.|.... |++++.|+.+
T Consensus 554 ~smDIS~DSklivTgSADKnVKiWGLdFG-DCHKS~fAHdD----Svm~V~F~P~~~~------------FFt~gKD~kv 616 (888)
T KOG0306|consen 554 LSMDISPDSKLIVTGSADKNVKIWGLDFG-DCHKSFFAHDD----SVMSVQFLPKTHL------------FFTCGKDGKV 616 (888)
T ss_pred eEEeccCCcCeEEeccCCCceEEeccccc-hhhhhhhcccC----ceeEEEEccccee------------EEEecCcceE
Confidence 999999999 888999999999998777 77888888876 8999999998744 4555666677
Q ss_pred ccccCCCccCh--hhhchhhhhhhhhcCCCCceeeCCCCCeeeeccccc
Q 041916 223 DSWVANPFETS--KQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKK 269 (359)
Q Consensus 223 ~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 269 (359)
+.|+...|+.. ..++..+|..+.- .|.....++.+..-+++.+++.
T Consensus 617 KqWDg~kFe~iq~L~~H~~ev~cLav-~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 617 KQWDGEKFEEIQKLDGHHSEVWCLAV-SPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred EeechhhhhhheeeccchheeeeeEE-cCCCCeEEeccCCceeEeeecc
Confidence 77776655542 3345556666542 2333344555555666666543
No 75
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=1.9e-24 Score=200.28 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=151.0
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEE-------------EEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIV-------------GNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTM 86 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~l 86 (359)
++...+++++..+++++.+.....|+...+..+ ..+.+|.++|.+++|+| ++.+|++|+.||+|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 344556667666677777777777776544322 13678999999999999 7889999999999999
Q ss_pred EeCCCC-------cceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916 87 WKPTTA-------APLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-- 153 (359)
Q Consensus 87 wd~~~~-------~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-- 153 (359)
||+.++ .++..+.+|...|.+++|+|++ ++|++++.|++|++||+.++..+..+ ...|.+++|+|+|
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 998764 3567888999999999999975 68999999999999999999887777 3468999999999
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc----CCCeEEEEEcCC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH----SMGWSSILVPGS 217 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~----~dg~~~i~~~~~ 217 (359)
+++++.|+.|++||+.++ ..+..+..|.. ..+..+.|.+++..+++++ .|+.+.+|....
T Consensus 183 Latgs~Dg~IrIwD~rsg-~~v~tl~~H~~---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDG-TIVSSVEAHAS---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEEecCCCEEEEEECCCC-cEEEEEecCCC---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 777888999999998776 45566666742 2356788999888777654 356666666543
No 76
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=182.54 Aligned_cols=194 Identities=15% Similarity=0.251 Sum_probs=163.4
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
.+.+|..|.+. .+++.+|+.++++||+.|..-.+|++.+|..+..+.+|...|+++.||.+|.+||+|+-+|.|.||..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 36789999997 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEcCCcEE
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGTGSFVQ 164 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~d~~i~ 164 (359)
.++.....+...-..+.-+.|+|.+..|+.|+.||.|.+|.+.+....+.+. .++++=.|.|+| ++++..||+|+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 9998888886556678889999999999999999999999999977777774 468899999999 88888999999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+||+.++ .++..+..- .+....++.++..+..++.|+.++
T Consensus 216 ~Wn~ktg-~p~~~~~~~---e~~~~~~~~~~~~~~~~~~g~~e~ 255 (399)
T KOG0296|consen 216 VWNPKTG-QPLHKITQA---EGLELPCISLNLAGSTLTKGNSEG 255 (399)
T ss_pred EEecCCC-ceeEEeccc---ccCcCCccccccccceeEeccCCc
Confidence 9998887 444433311 112455555555555555555555
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=186.11 Aligned_cols=209 Identities=18% Similarity=0.233 Sum_probs=180.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+-++| ..++.+.+|++|... +.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++
T Consensus 243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs 322 (506)
T KOG0289|consen 243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSAS 322 (506)
T ss_pred eEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEec
Confidence 45788 778889999999987 9999999999999999999999999988888888899999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-
Q 041916 80 SGGTVTMWKPTTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG- 153 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g- 153 (359)
.||+..+.|++++..+..... ..-.+++++|+|||..|.+|+.|+.|++||+.++..+..| .++|..++|+.+|
T Consensus 323 ~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY 402 (506)
T KOG0289|consen 323 NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGY 402 (506)
T ss_pred CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCce
Confidence 999999999999988776653 2235899999999999999999999999999999888888 4679999999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++++.|+.|++||++.. .....+... ....+.++.|.+.|.+|++++.+=.+.++.
T Consensus 403 ~Lat~add~~V~lwDLRKl-~n~kt~~l~---~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 403 WLATAADDGSVKLWDLRKL-KNFKTIQLD---EKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred EEEEEecCCeEEEEEehhh-cccceeecc---ccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 667778888999998766 445555444 233799999999999999997665444443
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=5.4e-25 Score=199.95 Aligned_cols=210 Identities=13% Similarity=0.239 Sum_probs=178.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-----CeE--EEEEe-----cCCCCeEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-----GEI--VGNFR-----TGLGRTDVMR 67 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~--~~~~~-----~~~~~v~~~~ 67 (359)
+.||| .....+-+++.|.+. ++++.+||+..+++||.|.+|++||..- |.. +-.+. .-...|.|+.
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~ 515 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVS 515 (888)
T ss_pred eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEE
Confidence 45677 666777788899998 9999999999999999999999999741 111 11111 1235799999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCc
Q 041916 68 VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHA 144 (359)
Q Consensus 68 ~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i 144 (359)
+||||.+|+++--|.+|.||-+++.+...++.+|.-||.|+..+||+++++|||.|..|++|-+.-|.|-..+ ...|
T Consensus 516 ~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv 595 (888)
T KOG0306|consen 516 VSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV 595 (888)
T ss_pred EcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988877 4679
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF 222 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~ 222 (359)
.++.|-|.. ++++|.|+.|+-||.. ....++.+.+|.. .|++++.+|+|.+++++ +.|.++
T Consensus 596 m~V~F~P~~~~FFt~gKD~kvKqWDg~-kFe~iq~L~~H~~----ev~cLav~~~G~~vvs~------------shD~sI 658 (888)
T KOG0306|consen 596 MSVQFLPKTHLFFTCGKDGKVKQWDGE-KFEEIQKLDGHHS----EVWCLAVSPNGSFVVSS------------SHDKSI 658 (888)
T ss_pred eEEEEcccceeEEEecCcceEEeechh-hhhhheeeccchh----eeeeeEEcCCCCeEEec------------cCCcee
Confidence 999999988 8999999999999944 3477888888876 89999999999877664 455567
Q ss_pred ccccCC
Q 041916 223 DSWVAN 228 (359)
Q Consensus 223 ~~~~~~ 228 (359)
++|+..
T Consensus 659 RlwE~t 664 (888)
T KOG0306|consen 659 RLWERT 664 (888)
T ss_pred Eeeecc
Confidence 777654
No 79
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.1e-26 Score=205.91 Aligned_cols=204 Identities=19% Similarity=0.292 Sum_probs=172.9
Q ss_pred eEEEe-CC---CcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCE
Q 041916 2 PYIYN-RD---GTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-NGV 74 (359)
Q Consensus 2 v~iwd-~~---g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-~~~ 74 (359)
|-+|| .. ...+..|..|... +++.|++. .++|++||.||+|++||++..+...++.+....|..++|+|. +..
T Consensus 112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~ 191 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNK 191 (839)
T ss_pred EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCce
Confidence 67899 32 3456688899987 99999986 578999999999999999998888888888889999999994 578
Q ss_pred EEEEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEec--cCCceeEEE
Q 041916 75 VSLGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTL--PGHAKTLDF 149 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~~~i~~~~~ 149 (359)
++++...|.+.+||++.. .+...+.+|.++|.|+.|+|++.+|||||.|+.|+|||+.+.+ ++.++ -.++.++.|
T Consensus 192 F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkW 271 (839)
T KOG0269|consen 192 FASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKW 271 (839)
T ss_pred EEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeee
Confidence 999999999999999976 4567788999999999999999999999999999999998754 34444 468999999
Q ss_pred cCCc---eEEEE--cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCe
Q 041916 150 SQKG---LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGW 209 (359)
Q Consensus 150 s~~g---l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~ 209 (359)
-|.. |.+++ .|-.|+|||++...-+...+..|.. .++.++|.. |-..|.+++.||.
T Consensus 272 RP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~----~vt~i~W~~~d~~~l~s~sKD~t 333 (839)
T KOG0269|consen 272 RPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD----SVTGIAWDSGDRINLWSCSKDGT 333 (839)
T ss_pred ccCccchhhhhhccccceEEEEeeccccccceeeeccCc----cccceeccCCCceeeEeecCccH
Confidence 9987 55444 4679999999888777888888865 789999976 4457788888884
No 80
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=178.16 Aligned_cols=184 Identities=18% Similarity=0.220 Sum_probs=140.4
Q ss_pred eEEEEEec-CCCEEEEEecCCeEEEEECCC-CeEE-EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLR-NHFLLASINKFGQLRYQDVTM-GEIV-GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
+.+|+||| ...+++.+|.||+|++|++.. |..+ .....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~ 108 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQ 108 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Ceee
Confidence 39999999 567777999999999999986 3433 334568999999999999999999999999999999998 4666
Q ss_pred EeccCCCeEEEEEcCCCC--EEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCC
Q 041916 98 MLCHQGPVSALAFHPNGH--LMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSH 173 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~ 173 (359)
+..|.++|.++.|-+... .|+|||.|.+|+.||+|...++.++ +..+.++..-..-++++..++.|.+|++.++..
T Consensus 109 v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~t 188 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPT 188 (347)
T ss_pred eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcc
Confidence 788999999999988666 7999999999999999999998877 667777766555467777889999999866532
Q ss_pred ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
........ -...+.+|+..++.+..+.|+..|
T Consensus 189 e~k~~~Sp---Lk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 189 EFKRIESP---LKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred hhhhhcCc---ccceeeEEEEEecCCceEeeeecc
Confidence 22211111 112344555444444444444444
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=3.9e-24 Score=172.72 Aligned_cols=196 Identities=18% Similarity=0.220 Sum_probs=169.3
Q ss_pred EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916 14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~ 92 (359)
.+++|..+ +.+.|+.+|.+|.+|+.|.+..+|=..+|+.+.++.+|.+.|+|+..+-+...+++|+.|.+++|||+.+|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47889999 99999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCC-------ceeeEec---cCCceeEEEcCCc--eE
Q 041916 93 APLIKMLCHQGPVSALAFHPNGHLMATSGK-----ECKIKIWDLRK-------YEVLQTL---PGHAKTLDFSQKG--LL 155 (359)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~-------~~~~~~~---~~~i~~~~~s~~g--l~ 155 (359)
+.+..+.. ..+|..+.|+++|++++.++. .+.|.++|++. ..|...+ ...++.+-|+|-+ ++
T Consensus 85 k~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 99998864 678999999999999887764 46899999983 3455555 4578999999999 78
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++..+|.|.+||..++...+.....|.. .|++++|+|+..++++++.|....+|.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~----~Ind~q~s~d~T~FiT~s~Dttakl~D 218 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSS----KINDLQFSRDRTYFITGSKDTTAKLVD 218 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhcc----ccccccccCCcceEEecccCccceeee
Confidence 8889999999999888677776666654 899999999998777766655444433
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=8.7e-25 Score=201.45 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=171.8
Q ss_pred cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 041916 10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lw 87 (359)
++++.|.+|.+- ..|+||.+ ++|++++.|.+|++|++....|+..|. |...|+|++|+| |.++|++|+-||.|+||
T Consensus 360 kP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred cchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence 456788999986 99999976 478899999999999999999999987 899999999999 66899999999999999
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----------cCCceeEEEcCCc---
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----------PGHAKTLDFSQKG--- 153 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----------~~~i~~~~~s~~g--- 153 (359)
++...+.+.-... ..-|++++|.|||++.++|+.+|.+++|++...+....+ ...|+.+.|.|..
T Consensus 438 sI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 438 SISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred ecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 9987655443333 478999999999999999999999999999987765544 1259999999865
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+++.+.|..|+|||+... .++..+.++.. ...-....|+.||++|++|+.|..+.+|-..+.+
T Consensus 517 vLVTSnDSrIRI~d~~~~-~lv~KfKG~~n--~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRDK-DLVHKFKGFRN--TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEEecCCCceEEEeccch-hhhhhhccccc--CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 889999999999997554 67777777643 3345678999999999999999999999864433
No 83
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=8.3e-25 Score=188.65 Aligned_cols=208 Identities=13% Similarity=0.195 Sum_probs=175.8
Q ss_pred cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 041916 17 EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL 95 (359)
Q Consensus 17 ~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~ 95 (359)
.|... .+++.||||+|||+|+.|..|.|||+++++.+..+.+|.+.|.+++|-.....+++++.|++|.+|++.....+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 66666 99999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCC
Q 041916 96 IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~ 172 (359)
.++.+|++.|.+|....-++.+.+|+.|+++++|++..-. .+..- .+.+.|++|-.+. +++++.+|.|.+|++....
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 9999999999999988888888888899999999995432 22222 4578999998887 9999999999999987764
Q ss_pred CccceeecccCCCC-------cceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccc
Q 041916 173 HNYSRYMGHSMVKG-------YQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDS 224 (359)
Q Consensus 173 ~~~~~~~~~~~~~~-------~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~ 224 (359)
.....-..|...+. ..|++++..|..+++++|+.+|.+++|.+..+-..+.+
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 44444445544232 27999999999999999988888888887766444443
No 84
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=7.2e-24 Score=167.46 Aligned_cols=191 Identities=17% Similarity=0.156 Sum_probs=158.4
Q ss_pred ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE-----EEEEecCCCCeEEEEEcCC----CCEEEEEe-CCCeE
Q 041916 16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI-----VGNFRTGLGRTDVMRVNPF----NGVVSLGH-SGGTV 84 (359)
Q Consensus 16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~sp~----~~~l~sg~-~dg~v 84 (359)
+.|.+. .|.+|+|+|.+|++|++|.+|++.-.....+ -..|.-|.+.|..++|-.+ +.+|++++ .|..|
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 467776 9999999999999999999999987654322 2457789999999999653 35677654 57889
Q ss_pred EEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----------cCCceeEEEcCCc-
Q 041916 85 TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----------PGHAKTLDFSQKG- 153 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~i~~~~~s~~g- 153 (359)
++-|...++.+..+.+|.+-|.++- +=+|-++++|+.|.+|++||+|-..++.++ ...|.+++..|.|
T Consensus 166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 9999999999999999999998762 336789999999999999999998888877 1357899999999
Q ss_pred eE-EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 154 LL-AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 154 l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
++ ++-.|..+.+||++.+ ..++.+..|.. .|.++.|+|...||++++.|..+++
T Consensus 245 ll~sg~~dssc~lydirg~-r~iq~f~phsa----dir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 245 LLASGHADSSCMLYDIRGG-RMIQRFHPHSA----DIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred eeeeccCCCceEEEEeeCC-ceeeeeCCCcc----ceeEEEeCCCceEEEEecccceEEE
Confidence 44 4557899999997655 88888888876 8999999999999999998876554
No 85
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=186.53 Aligned_cols=197 Identities=17% Similarity=0.176 Sum_probs=169.8
Q ss_pred CCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC-------
Q 041916 19 GAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT------- 90 (359)
Q Consensus 19 ~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~------- 90 (359)
.++ .+++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-.+|+|+.|+.||.+|++||.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 444 999999999999999899999999999999999999999999999999999999999999999999853
Q ss_pred --CCcceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCc
Q 041916 91 --TAAPLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSF 162 (359)
Q Consensus 91 --~~~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~ 162 (359)
+.+++..|..|.-+|+++...+. ..+++|+|.|.++++||+..+..+.++ +..+.+++.+|.+ +++|+.+|.
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence 34678889999999999998774 457999999999999999999988777 7789999999998 888899999
Q ss_pred EEEEcCCCCC---------------CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 163 VQILGDFSGS---------------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 163 i~i~d~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
|.+.++.... .....+.+|. .+.+|+|++.+-||..|++|+.||.+.+|...+
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~--~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE--NESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeecccc--CCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 9998764321 1123344553 235899999999999999999999988887655
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=191.11 Aligned_cols=213 Identities=15% Similarity=0.185 Sum_probs=179.7
Q ss_pred eEEEeCCC-c--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDG-T--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g-~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|.+|+..| + .+.+|.+..+. +++.|.+++.++++++.|+.+++|++...+...++.+|.+.|+++.|......+++
T Consensus 199 Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVs 278 (459)
T KOG0288|consen 199 IKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVS 278 (459)
T ss_pred hhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceee
Confidence 57888333 2 46777787776 99999999999999999999999999999999999999999999999887777999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-- 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-- 153 (359)
|+.|.+|++||+....+..++.. .+.+.+|+.+ +..+++|..|++|++||+|+..++... .+.|+++..+++|
T Consensus 279 gs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~ 355 (459)
T KOG0288|consen 279 GSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLE 355 (459)
T ss_pred ccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeE
Confidence 99999999999998777666542 3456777776 557889999999999999999998888 5689999999999
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+++++.|.++.++|+++. ....++.......+..++.+.|||++.|+++|+.||.+.||..-++
T Consensus 356 lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 356 LLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred EeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc
Confidence 889999999999998776 6666776665545667999999999999999888887777665443
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=3.3e-24 Score=199.20 Aligned_cols=201 Identities=21% Similarity=0.352 Sum_probs=168.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+++||| .+|.+.+.+.+|... .++... ..++++|+.|.+|++|++.++.++..+.+|.++|+++..+ +.++++|
T Consensus 272 t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsg 347 (537)
T KOG0274|consen 272 TERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSG 347 (537)
T ss_pred cEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEE
Confidence 589999 999999999999998 888774 4578889999999999999999999999999999999987 7899999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEeccCC---ceeEEEcCCce
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTLPGH---AKTLDFSQKGL 154 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~---i~~~~~s~~gl 154 (359)
+.||+|.+||+.+++++.++.+|.+.|.++.+.+. ..+++|+.|++|++||+++. +++..+.++ +.++.+...-+
T Consensus 348 s~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~L 426 (537)
T KOG0274|consen 348 SYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFL 426 (537)
T ss_pred ecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccccee
Confidence 99999999999999999999999999999988765 89999999999999999999 898888544 45555555558
Q ss_pred EEEEcCCcEEEEcCCCCCCccceeec-ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 155 LAVGTGSFVQILGDFSGSHNYSRYMG-HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++++.|++|++||..++ .....+.+ |.. .|..+++. ...+++++.+|.+.+|
T Consensus 427 vs~~aD~~Ik~WD~~~~-~~~~~~~~~~~~----~v~~l~~~--~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 427 VSSSADGTIKLWDAEEG-ECLRTLEGRHVG----GVSALALG--KEEILCSSDDGSVKLW 479 (537)
T ss_pred EeccccccEEEeecccC-ceeeeeccCCcc----cEEEeecC--cceEEEEecCCeeEEE
Confidence 88999999999997666 66666666 433 68777776 3444444444433333
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=184.64 Aligned_cols=211 Identities=16% Similarity=0.147 Sum_probs=174.2
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
..+.+..|.+- .-+.||++|+||||++.|.+..||++... +...++.+|..+|..+.||||.++|++++.|-.+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 35667788875 99999999999999999999999998654 347788899999999999999999999999999999
Q ss_pred EeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc----CCceeEEEcCCc--eEEEEc
Q 041916 87 WKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP----GHAKTLDFSQKG--LLAVGT 159 (359)
Q Consensus 87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~i~~~~~s~~g--l~~~~~ 159 (359)
||+.+|.....+. +|...+.+.+|.|||..+++|+.|++|..||+.. ..+..+. ..|.++++++|| +++++.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999998887765 4457899999999999999999999999999974 3344442 358999999999 888889
Q ss_pred CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE-----------------------------
Q 041916 160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS----------------------------- 210 (359)
Q Consensus 160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~----------------------------- 210 (359)
|..|++|+..+. .....+..+. +|++++.|.+++++++.-.+..+
T Consensus 375 d~~i~l~~~e~~-~dr~lise~~-----~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 375 DKKIRLYNREAR-VDRGLISEEQ-----PITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred ccceeeechhhh-hhhccccccC-----ceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 999999996543 2222333333 79999999999888775544422
Q ss_pred ----EEEEcCCCCCccccccCC
Q 041916 211 ----SILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 211 ----~i~~~~~~d~~~~~~~~~ 228 (359)
.++.+|+.|+.+++|+..
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~ 470 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRI 470 (519)
T ss_pred CCCcceEEecCCCceEEEEEcc
Confidence 457899999999999864
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-24 Score=185.07 Aligned_cols=224 Identities=16% Similarity=0.118 Sum_probs=178.2
Q ss_pred eEEEe--CC--CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN--RD--GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd--~~--g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l 75 (359)
..||. .+ -+..+++-+|..+ .-+.||||.++|++|+.|..+.+||+.+|.+...+.. +...+.+++|.|||..+
T Consensus 248 aiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~ 327 (519)
T KOG0293|consen 248 AIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRF 327 (519)
T ss_pred EEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCcee
Confidence 34565 22 3357888899887 9999999999999999999999999999998877764 45689999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe--ccCCceeEEEcCC
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQ-GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT--LPGHAKTLDFSQK 152 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~--~~~~i~~~~~s~~ 152 (359)
++|+.|+++..||++ |.....+.+-. ..|.+++..+||+++++.+.|..|++|+..+...... ...+|+++++|.+
T Consensus 328 V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d 406 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKD 406 (519)
T ss_pred EecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCC
Confidence 999999999999987 44455555433 3589999999999999999999999999887554433 3678999999999
Q ss_pred c-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEE-----------------
Q 041916 153 G-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSI----------------- 212 (359)
Q Consensus 153 g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i----------------- 212 (359)
| ++.+ -.+..+++||+... ..+..|.+|.. +.-+..-||.- +..++++|+.|+.+.|
T Consensus 407 ~k~~LvnL~~qei~LWDl~e~-~lv~kY~Ghkq--~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~ 483 (519)
T KOG0293|consen 407 GKLALVNLQDQEIHLWDLEEN-KLVRKYFGHKQ--GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK 483 (519)
T ss_pred CcEEEEEcccCeeEEeecchh-hHHHHhhcccc--cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc
Confidence 9 4444 46789999998744 77888888864 22344555654 4489999999997776
Q ss_pred --------------EEcCCCCCccccccCCC
Q 041916 213 --------------LVPGSGEPNFDSWVANP 229 (359)
Q Consensus 213 --------------~~~~~~d~~~~~~~~~~ 229 (359)
++++++|++|++|...+
T Consensus 484 ~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 484 TVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 46778888888887654
No 90
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=5e-25 Score=192.42 Aligned_cols=195 Identities=17% Similarity=0.191 Sum_probs=153.5
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC---------------------------CeEEEE-------
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM---------------------------GEIVGN------- 55 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~---------------------------~~~~~~------- 55 (359)
.-..|++|+.+ .++++.|.|..|+|||.|-+|++||+.. |..+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 34567888887 9999999999999999999999999852 111100
Q ss_pred -------------------------EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcc-eEEEe-----ccCC
Q 041916 56 -------------------------FRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAP-LIKML-----CHQG 103 (359)
Q Consensus 56 -------------------------~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~-~~~~~-----~h~~ 103 (359)
.++|...++|.+|+|.. ..+++++.||++++||++..+. +..+. +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 24788889999999986 5789999999999999986543 33332 3345
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEec------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTL------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSH 173 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~ 173 (359)
++++.+|+|||++||+|+.||+|.+||.+... +...+ ...|+||+||++| |++-|.|+++++||++...+
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 78999999999999999999999999986643 22222 2369999999999 88889999999999988767
Q ss_pred ccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
++....+-. ...+-+.++|+|+.++|++|++-
T Consensus 399 pL~~~tgL~--t~~~~tdc~FSPd~kli~TGtS~ 430 (641)
T KOG0772|consen 399 PLNVRTGLP--TPFPGTDCCFSPDDKLILTGTSA 430 (641)
T ss_pred chhhhcCCC--ccCCCCccccCCCceEEEecccc
Confidence 766555442 34467899999999999998753
No 91
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=169.25 Aligned_cols=217 Identities=17% Similarity=0.225 Sum_probs=181.9
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+|++|| ..+++...+....+-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+. .-.++.++|+-++.+++...
T Consensus 88 ~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~ 166 (313)
T KOG1407|consen 88 TIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN 166 (313)
T ss_pred eEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec
Confidence 489999 9999998888777768899999999999999999999999998887766553 34678899998888888888
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--e
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--L 154 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l 154 (359)
..|.|.|......+++.++.+|+....||.|+|+|++||+|+.|..+.+||+...-+++.+ .-+|..++||.+| +
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 8899999999999999999999999999999999999999999999999999987777766 5689999999999 6
Q ss_pred EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
++++.|..|-|-++.+|.+... +. ..++...++|+|...+|+.+.+|... .+....++++++-.
T Consensus 247 ASaSEDh~IDIA~vetGd~~~e-I~-----~~~~t~tVAWHPk~~LLAyA~ddk~~---d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 247 ASASEDHFIDIAEVETGDRVWE-IP-----CEGPTFTVAWHPKRPLLAYACDDKDG---DSNREAGTVKIFGL 310 (313)
T ss_pred eccCccceEEeEecccCCeEEE-ee-----ccCCceeEEecCCCceeeEEecCCCC---ccccccceeEEecC
Confidence 6677889999999888844332 22 23389999999999999988877532 23334566666643
No 92
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=9.4e-24 Score=178.16 Aligned_cols=205 Identities=14% Similarity=0.165 Sum_probs=167.5
Q ss_pred eEEEe-CCCcE----EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-------------------------CC
Q 041916 2 PYIYN-RDGTE----LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-------------------------MG 50 (359)
Q Consensus 2 v~iwd-~~g~~----~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-------------------------~~ 50 (359)
+++|- ..+.. ++.-++|.+. -+++..++|..+++|+.|.+|.||+.. ++
T Consensus 171 l~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r 250 (423)
T KOG0313|consen 171 LRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTR 250 (423)
T ss_pred EEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhccccc
Confidence 55665 33332 3344589987 999999999999999999999999932 12
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916 51 EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130 (359)
Q Consensus 51 ~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd 130 (359)
.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++....++.+ ...++++..+|..++|++|+.|..|++||
T Consensus 251 ~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~D 328 (423)
T KOG0313|consen 251 TPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWD 328 (423)
T ss_pred CceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecC
Confidence 36667889999999999988 67899999999999999999998888765 45689999999999999999999999999
Q ss_pred cCCce---eeEec---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 131 LRKYE---VLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 131 ~~~~~---~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
.|++. +.++| .+.|.++.|+|.. +++++.|+++++||+++...++..+.+|.. .|.++.|.. +.++
T Consensus 329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D----Kvl~vdW~~-~~~I 403 (423)
T KOG0313|consen 329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND----KVLSVDWNE-GGLI 403 (423)
T ss_pred CCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc----eEEEEeccC-CceE
Confidence 99853 34445 4568999999988 888999999999999888668888888865 899999986 4456
Q ss_pred EEEcCCCeEEEE
Q 041916 202 GIGHSMGWSSIL 213 (359)
Q Consensus 202 ~~~~~dg~~~i~ 213 (359)
++|+.|..++++
T Consensus 404 vSGGaD~~l~i~ 415 (423)
T KOG0313|consen 404 VSGGADNKLRIF 415 (423)
T ss_pred EeccCcceEEEe
Confidence 665555544443
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=172.55 Aligned_cols=131 Identities=18% Similarity=0.275 Sum_probs=113.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCC--EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHF--LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|+||| ....++..+-.|.+. +++.|.++-. .|++|+.||.|.+|++....++.++++|.+.|+.++.+|.|.+.+
T Consensus 64 tI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 64 TIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred cEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEE
Confidence 689999 888888899999987 9999998754 899999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
+.+.|+.+++||+-.|+.-..+.- ....+.+.|+|.|.+++.++.+ .|-+|.+.+
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred EEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 999999999999988875444431 1223459999999999888875 588888765
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=185.64 Aligned_cols=205 Identities=18% Similarity=0.153 Sum_probs=173.0
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+++|+ .++.+.++|.+|.+- +++.|.-....+++|+.|.+|++||+....|..++. ..+.+..|+.+ ...+++|.
T Consensus 243 ~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH 319 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGH 319 (459)
T ss_pred eeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecc
Confidence 68999 889999999999996 999998877779999999999999999988877765 33567777776 46789999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------CCceeEEEcCC
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------GHAKTLDFSQK 152 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~i~~~~~s~~ 152 (359)
.|++|++||+++..+...+..+. .|+++..+++|..+++++.|.++.+.|+++......+. ...+.+.|||+
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 99999999999999988887654 89999999999999999999999999999998887772 24688999999
Q ss_pred c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 153 G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+ +++|+.||.|+||++.++ ++...+.... ....|++++|+|.|..|++++.++.+.+|
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~s~--s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTG-KLEKVLSLST--SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CceeeeccCCCcEEEEEccCc-eEEEEeccCC--CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9 667788999999997776 4544444332 22269999999999999998888776665
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=168.23 Aligned_cols=194 Identities=14% Similarity=0.192 Sum_probs=161.2
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEe
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWK 88 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd 88 (359)
..+++|... .+++|+.+|..|++|+.|+++.+|++..+..+.. ..+|.+.|-.++|+|.. ..+++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 345667776 9999999999999999999999999987755433 45788899999998854 7899999999999999
Q ss_pred CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEE-EEcCCcEE
Q 041916 89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLA-VGTGSFVQ 164 (359)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~-~~~d~~i~ 164 (359)
++++++...+....+.| -++|+|+|.++++++.|..|.+.|.++.+.+... ...+..++|+-++ ++. ....|.|.
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999998887544444 5899999999999999999999999999887776 4567889998766 444 44459999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
|.....- ++++.+.+|+. ...+|.|+|+|+++++|+.|..+++
T Consensus 173 ILsypsL-kpv~si~AH~s----nCicI~f~p~GryfA~GsADAlvSL 215 (313)
T KOG1407|consen 173 ILSYPSL-KPVQSIKAHPS----NCICIEFDPDGRYFATGSADALVSL 215 (313)
T ss_pred EEecccc-ccccccccCCc----ceEEEEECCCCceEeeccccceeec
Confidence 9986644 78888889965 8999999999999999777764444
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.7e-25 Score=201.16 Aligned_cols=194 Identities=19% Similarity=0.288 Sum_probs=172.1
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
.+..|.+|..+ .++.|+++..+|++|+.+|+|++||+..++.++++.+|...+..+.|+|.+.+.++|+.|+.+.+||+
T Consensus 62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 34568899998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEcCCcEE
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGTGSFVQ 164 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~d~~i~ 164 (359)
+...+...+.+|...|.++.|+|+|.++++++.|.++++||++.|+.+..|+ +.+.++.|+|.. +..++.|++++
T Consensus 142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~ 221 (825)
T KOG0267|consen 142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR 221 (825)
T ss_pred hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence 9888999999999999999999999999999999999999999999999885 788999999998 55678899999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
+||+.+- ..+...... ...|.+.+|+|++..+.+|.....
T Consensus 222 f~dletf-e~I~s~~~~----~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 222 FWDLETF-EVISSGKPE----TDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eecccee-EEeeccCCc----cCCceeeeecCCceeeecCchhhh
Confidence 9997654 233322222 237999999999999888876653
No 97
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.3e-23 Score=164.24 Aligned_cols=213 Identities=14% Similarity=0.183 Sum_probs=166.0
Q ss_pred CeEEEe--CCC--cEEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC
Q 041916 1 YPYIYN--RDG--TELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd--~~g--~~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~ 71 (359)
+|+|+. .+| ..+.+|.+|.++ ..++|.. .|.+||+++.||.|.||.-.+|. ....+..|...|++++|.|.
T Consensus 34 tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~waph 113 (299)
T KOG1332|consen 34 TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPH 113 (299)
T ss_pred cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeeccccc
Confidence 478888 444 578999999998 9999966 79999999999999999988774 34566789999999999986
Q ss_pred --CCEEEEEeCCCeEEEEeCCCC-c--ceEEEeccCCCeEEEEEcCC---C-----------CEEEEEeCCCeEEEEEcC
Q 041916 72 --NGVVSLGHSGGTVTMWKPTTA-A--PLIKMLCHQGPVSALAFHPN---G-----------HLMATSGKECKIKIWDLR 132 (359)
Q Consensus 72 --~~~l~sg~~dg~v~lwd~~~~-~--~~~~~~~h~~~v~~i~~~~~---~-----------~~l~~~~~d~~i~iwd~~ 132 (359)
|-.|++++.||.|.|.+.+.. . ......+|.-.|++++|.|. | ..|++|+.|..|+||+..
T Consensus 114 eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~ 193 (299)
T KOG1332|consen 114 EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFD 193 (299)
T ss_pred ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecC
Confidence 468999999999999998754 1 22334589999999999984 4 569999999999999998
Q ss_pred Cce--eeEec---cCCceeEEEcCCc------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 133 KYE--VLQTL---PGHAKTLDFSQKG------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 133 ~~~--~~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
++. .-..+ .+-|..++|.|.- +++++.||++.||...........-.-+. ....++++.|++.|.+|
T Consensus 194 ~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w~vSWS~sGn~L 271 (299)
T KOG1332|consen 194 SDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVWRVSWSLSGNIL 271 (299)
T ss_pred CcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccccc--CCcceEEEEEeccccEE
Confidence 853 22234 4568999999964 78889999999997543222222222222 12279999999999999
Q ss_pred EEEcCCCeEEEEEc
Q 041916 202 GIGHSMGWSSILVP 215 (359)
Q Consensus 202 ~~~~~dg~~~i~~~ 215 (359)
++++.|..+.+|..
T Consensus 272 aVs~GdNkvtlwke 285 (299)
T KOG1332|consen 272 AVSGGDNKVTLWKE 285 (299)
T ss_pred EEecCCcEEEEEEe
Confidence 88777776666653
No 98
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=177.35 Aligned_cols=198 Identities=15% Similarity=0.237 Sum_probs=158.5
Q ss_pred cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 10 TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIV---GNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
.++.++.+|..- ++|+|||-. ..|+||..-+.|++|...+|.-. ..|.+|...|-.++|||.. ..|++||.||+
T Consensus 202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence 457889999988 999999942 34788888899999999987532 3466799999999999975 68999999999
Q ss_pred EEEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec---cCCceeEEEcCCc--
Q 041916 84 VTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL---PGHAKTLDFSQKG-- 153 (359)
Q Consensus 84 v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~---~~~i~~~~~s~~g-- 153 (359)
|+|||++.+. +.....+|.+.|+.|+|+..-.+||+|+.||+++|||+|+ ++++..| .++|+++.|+|..
T Consensus 282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence 9999999873 3334479999999999999888999999999999999997 4567666 6799999999976
Q ss_pred -eEEEEcCCcEEEEcCCCCC---------------CccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCe
Q 041916 154 -LLAVGTGSFVQILGDFSGS---------------HNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGW 209 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~ 209 (359)
++++|.|.+|.+||+.... -+.+.+.-|.+ ...+-.+.|+++-. +|++.+.||+
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG--Qke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG--QKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc--hhHhhhheeccCCCCeEEEecccce
Confidence 7778899999999975421 12334555642 23578899998754 5666666774
No 99
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=1.6e-23 Score=197.79 Aligned_cols=188 Identities=12% Similarity=0.178 Sum_probs=152.3
Q ss_pred cCCC-e-EEEEEecCCCEEEEEe--cCCeEEEEECCC------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 17 EHGA-V-LKLQFLRNHFLLASIN--KFGQLRYQDVTM------------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 17 ~h~~-~-~~l~~s~~~~~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
+|.+ . .+++.+|||..+|||+ .||.++||+... .+.+.+...|.+.|+|+.|+|||.+||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 4444 4 8999999999999999 899999999752 2356677789999999999999999999999
Q ss_pred CCeEEEEeCCC------------------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916 81 GGTVTMWKPTT------------------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-- 140 (359)
Q Consensus 81 dg~v~lwd~~~------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 140 (359)
|+.|.+|.-.. .+.+..+.+|.+.|.+++|+|++.+|++++.|++|.+||.++++.+..+
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec
Confidence 99999998652 1245677899999999999999999999999999999999999888887
Q ss_pred -cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeeccc--CCCCcceEEEEEeeCCCEEEEEc
Q 041916 141 -PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHS--MVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 141 -~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.+.|-.+.|.|-| +++-+.|++|+||.+..- .....+..+- ......+..+.|+|||.+|++..
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw-~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW-GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccc-eeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 4568999999999 555678899999995442 2222222210 11234689999999999998754
No 100
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.4e-22 Score=166.91 Aligned_cols=204 Identities=16% Similarity=0.159 Sum_probs=169.0
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
+.++.|+|.+..|++++.||++++||+........++ |..++.+++|.+ ...+++|+.||.|+++|++++.. ..+..
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-~~igt 92 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-DQIGT 92 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-eeecc
Confidence 4999999998888888999999999998876555555 889999999987 46788999999999999998754 44567
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCcccee
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY 178 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~ 178 (359)
|..+|+||.+++-...+++||.|++|++||.|...++..+ ...|.++..+.+.|++++.+..+.+||+++.....+..
T Consensus 93 h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~r 172 (323)
T KOG1036|consen 93 HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRR 172 (323)
T ss_pred CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhc
Confidence 9999999999998889999999999999999986666666 45788888888779999999999999998875555333
Q ss_pred ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE-------------------------------------------EEc
Q 041916 179 MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI-------------------------------------------LVP 215 (359)
Q Consensus 179 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i-------------------------------------------~~~ 215 (359)
... -...+.++++-|++.-+++++.+|.+.+ |++
T Consensus 173 eS~---lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaT 249 (323)
T KOG1036|consen 173 ESS---LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFAT 249 (323)
T ss_pred ccc---ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEe
Confidence 222 2347899999998888888888883332 788
Q ss_pred CCCCCccccccCCCc
Q 041916 216 GSGEPNFDSWVANPF 230 (359)
Q Consensus 216 ~~~d~~~~~~~~~~~ 230 (359)
|+.||-+.+|+..+-
T Consensus 250 gGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 250 GGSDGIVNIWDLFNR 264 (323)
T ss_pred cCCCceEEEccCcch
Confidence 999999999997543
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1e-23 Score=177.03 Aligned_cols=211 Identities=14% Similarity=0.230 Sum_probs=168.5
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-------------------------------
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT------------------------------- 48 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~------------------------------- 48 (359)
|.||| .+..+..+|..|.+. ..|++.. ..++++|.|.+|+.|-+.
T Consensus 91 VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~ 168 (433)
T KOG0268|consen 91 VKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQ 168 (433)
T ss_pred EEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCce
Confidence 78999 888899999999987 9999876 567788888887777632
Q ss_pred -------CCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE
Q 041916 49 -------MGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS 120 (359)
Q Consensus 49 -------~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~ 120 (359)
...++.++......|.++.|+|.. .+|++|+.|+.|.|||++++.|+..+.- ...-+.|+|+|.+-.+++|
T Consensus 169 i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a 247 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAA 247 (433)
T ss_pred eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeec
Confidence 223444455555678899999965 5788888999999999999999877642 3345789999988889999
Q ss_pred eCCCeEEEEEcCCc-eeeEeccC---CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE
Q 041916 121 GKECKIKIWDLRKY-EVLQTLPG---HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF 194 (359)
Q Consensus 121 ~~d~~i~iwd~~~~-~~~~~~~~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 194 (359)
+.|..++.||+|.. .++..+.+ .|.+++|||.| ++++|.|.+|+||....+ .....|... .-+.|.++.|
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~-~SRdiYhtk---RMq~V~~Vk~ 323 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG-HSRDIYHTK---RMQHVFCVKY 323 (433)
T ss_pred cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC-cchhhhhHh---hhheeeEEEE
Confidence 99999999999985 46666644 56899999999 999999999999996554 444444433 2247999999
Q ss_pred eeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 195 RPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 195 ~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+.|.+++++||.|+.+++|-.-..+
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred eccccEEEecCCCcceeeeecchhh
Confidence 9999999999999999999865543
No 102
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.5e-23 Score=171.98 Aligned_cols=209 Identities=12% Similarity=0.151 Sum_probs=181.4
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEEC------CC-----------------------
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDV------TM----------------------- 49 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~------~~----------------------- 49 (359)
+-+||. .+|.++.++.+|.+. +++.|++.+.++++++.|++-.||.. ..
T Consensus 171 TA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~ 250 (481)
T KOG0300|consen 171 TARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDT 250 (481)
T ss_pred ceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccccc
Confidence 357999 999999999999997 99999999999999999999999972 10
Q ss_pred -----------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916 50 -----------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA 118 (359)
Q Consensus 50 -----------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 118 (359)
.-++..+.+|.+.|.+..|-..|..+++++.|.+..+||+.++.++..+.+|....+.++-+|..++++
T Consensus 251 d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVv 330 (481)
T KOG0300|consen 251 DSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVV 330 (481)
T ss_pred ccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEE
Confidence 024566889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEEcCCce-eeEecc---CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916 119 TSGKECKIKIWDLRKYE-VLQTLP---GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS 193 (359)
Q Consensus 119 ~~~~d~~i~iwd~~~~~-~~~~~~---~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 193 (359)
+++.|.+.++||+|..- .+..|. ..|+++.|.-+. +++++.|.+|++||+.+...++..+.... +++.++
T Consensus 331 TsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS-----~~NRva 405 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDS-----PANRVA 405 (481)
T ss_pred EeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCC-----ccceeE
Confidence 99999999999999643 345554 468999999888 89999999999999988877777776543 799999
Q ss_pred EeeCCCEEEEEcCCCeEEEEE
Q 041916 194 FRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 194 ~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+..+.+++.-+.+..+++|.
T Consensus 406 vs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 406 VSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred eecCCceEEeccCCceEEEEe
Confidence 999888888877776666655
No 103
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.2e-23 Score=170.73 Aligned_cols=157 Identities=20% Similarity=0.223 Sum_probs=109.8
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCC---CC-----cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc----
Q 041916 67 RVNPFNGVVSLGHSGGTVTMWKPT---TA-----APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY---- 134 (359)
Q Consensus 67 ~~sp~~~~l~sg~~dg~v~lwd~~---~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~---- 134 (359)
+.||+|+++++++.---|.+|.+- .| ..+..+.+|.+.|.+++|+|++..+++.|.||++++||+.-.
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~ 314 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG 314 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC
Confidence 345555555555555555555532 11 123457799999999999999999999999999999998531
Q ss_pred ---eeeEec-------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 135 ---EVLQTL-------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 135 ---~~~~~~-------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
+.+... .+....++++|.| .++++.+..|++|...++......-..|. ..|.+++|+|+|+++++
T Consensus 315 qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~----~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 315 QDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS----TTISSISYSSDGKYIAT 390 (420)
T ss_pred CCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc----CceeeEEecCCCcEEee
Confidence 122222 2334589999999 99999999999999877643333334444 48999999999999999
Q ss_pred EcCCCeEEEEEcCCCCCccccccC
Q 041916 204 GHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 204 ~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
++..-..-+-.+.+.+..+..|+.
T Consensus 391 cGdr~vrv~~ntpg~~~~V~~~~~ 414 (420)
T KOG2096|consen 391 CGDRYVRVIRNTPGWHSRVVKLNR 414 (420)
T ss_pred ecceeeeeecCCCchhhHHHHhhc
Confidence 877643333335556666666653
No 104
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.3e-23 Score=183.24 Aligned_cols=209 Identities=16% Similarity=0.192 Sum_probs=165.4
Q ss_pred CeEEEeCC--C--cEEEEec---cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCC
Q 041916 1 YPYIYNRD--G--TELHCLK---EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd~~--g--~~~~~l~---~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~ 71 (359)
+|+|||.+ | ..+..|. ...-++++..+|||+.|++|+.-.+|.|||+....+ ...+......+.+++.+||
T Consensus 441 cVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD 520 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 520 (705)
T ss_pred eEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc
Confidence 58999932 2 2333333 333358888999999999999999999999986543 2334444456778999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDF 149 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~ 149 (359)
.++.++++.||.|.|||+.+...+..|++|.+.+.||.+++||..|.||+-|.+|+.||+|.+..+... ...|.++..
T Consensus 521 akvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~ 600 (705)
T KOG0639|consen 521 AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGY 600 (705)
T ss_pred cceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheeccc
Confidence 999999999999999999999999999999999999999999999999999999999999998876554 789999999
Q ss_pred cCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 150 SQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 150 s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+|.+ ++++| .++.+.|... ++ .....+.-| .+-|.++.|.+.|+++++.+.|.....|-+
T Consensus 601 cP~~dWlavGMens~vevlh~-sk-p~kyqlhlh----eScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHT-SK-PEKYQLHLH----ESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred CCCccceeeecccCcEEEEec-CC-ccceeeccc----ccEEEEEEecccCceeeecCchhhhhhccC
Confidence 9999 66666 4578888763 22 233333333 448999999999998888777765544443
No 105
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=8.5e-23 Score=176.16 Aligned_cols=194 Identities=17% Similarity=0.261 Sum_probs=153.1
Q ss_pred cCCC-eEEEEEecCC-CEEEEEecCCeEEEEECCCCe----------EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 17 EHGA-VLKLQFLRNH-FLLASINKFGQLRYQDVTMGE----------IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 17 ~h~~-~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
.|.+ ++.+.+-|+. .++|+.+..+.|.|||..... +-..+.+|...-.+++|++.. ..|++|+.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 3444 5888898864 677888889999999986421 223678898877889999964 57999999999
Q ss_pred EEEEeCCCCc-------ceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC--ceeeEec---cCCceeEEEc
Q 041916 84 VTMWKPTTAA-------PLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK--YEVLQTL---PGHAKTLDFS 150 (359)
Q Consensus 84 v~lwd~~~~~-------~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~--~~~~~~~---~~~i~~~~~s 150 (359)
|++||++... +...+.+|.+.|..++|+| +..+|++++.|+.+.|||+|+ .++.... .+.+.|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999987542 3556779999999999999 566789999999999999995 3333333 5689999999
Q ss_pred CCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEE
Q 041916 151 QKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILV 214 (359)
Q Consensus 151 ~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~ 214 (359)
|-+ +++++.|++|.+||+++...++..+.+|.. .|.+|.|+|... +|++++.|+.+.+|.
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d----ev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHED----EVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCc----ceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 987 666778999999999988888888888866 899999999864 455544454444443
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.6e-23 Score=186.39 Aligned_cols=204 Identities=15% Similarity=0.221 Sum_probs=175.7
Q ss_pred eEEEe--CCCc-----EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEE-cC
Q 041916 2 PYIYN--RDGT-----ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRV-NP 70 (359)
Q Consensus 2 v~iwd--~~g~-----~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~-sp 70 (359)
|++|+ .... .+..++.|.+- +.++...+++.|+++|.|.+|++|+...+ -++.++..|...|.|++. .+
T Consensus 49 i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak 128 (735)
T KOG0308|consen 49 IRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAK 128 (735)
T ss_pred EEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeeccc
Confidence 67887 2222 36778889886 99999899999999999999999999877 578889999999999999 78
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcc--eE--------EEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 71 FNGVVSLGHSGGTVTMWKPTTAAP--LI--------KML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 71 ~~~~l~sg~~dg~v~lwd~~~~~~--~~--------~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
+..++|+|+-|+.|.+||++++.. +. .+. ++..+|.+++-++.|..|++|+..+.|++||.++.+.+..
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceee
Confidence 889999999999999999997732 22 223 7888999999999999999999999999999999887777
Q ss_pred cc---CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 140 LP---GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 140 ~~---~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
+. ..|.++..+++| ++++++||+|++||+... .++.++..|.. .|+++..+|+-..+.+|+.||.+
T Consensus 209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e----~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ-RCLATYIVHKE----GVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred eeccccceEEEEEcCCCCeEeecCCCceEEeeecccc-ceeeeEEeccC----ceEEEeeCCCcceEEecCCCCcE
Confidence 74 458999999999 999999999999997554 78888888865 69999999999999999999943
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=5.9e-23 Score=169.28 Aligned_cols=168 Identities=18% Similarity=0.303 Sum_probs=143.4
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lw 87 (359)
.+++|-.|.+. +++.|+|...+|++|+.|++|++||.......+.++ ....+|.++.|+|.|.+|++|..-.++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 46788889887 999999999999999999999999997543222222 244689999999999999999999999999
Q ss_pred eCCCCcceEEE---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEE
Q 041916 88 KPTTAAPLIKM---LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAV 157 (359)
Q Consensus 88 d~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~ 157 (359)
|+++.++...- ..|.+.|+++.+++.|++.++++.||.|++||--+++|+.++ ...|.+..|+.+| +++.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 99998876553 368999999999999999999999999999999999999998 2368999999999 7888
Q ss_pred EcCCcEEEEcCCCCCCccceee
Q 041916 158 GTGSFVQILGDFSGSHNYSRYM 179 (359)
Q Consensus 158 ~~d~~i~i~d~~~~~~~~~~~~ 179 (359)
|.|..+++|.+.++ ..+..|.
T Consensus 324 G~DS~vkLWEi~t~-R~l~~Yt 344 (430)
T KOG0640|consen 324 GKDSTVKLWEISTG-RMLKEYT 344 (430)
T ss_pred CCcceeeeeeecCC-ceEEEEe
Confidence 89999999998776 4444443
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.2e-22 Score=183.27 Aligned_cols=216 Identities=13% Similarity=0.173 Sum_probs=183.7
Q ss_pred CeEEEeCCCcE---EEEeccCCCe--EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916 1 YPYIYNRDGTE---LHCLKEHGAV--LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd~~g~~---~~~l~~h~~~--~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
++++|+..+.. .+.+.+|.+. .+++|.+ ++-.|++|+.|++|.+|.+.+..++..+.+|.+.|.|+....++.
T Consensus 36 t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~- 114 (745)
T KOG0301|consen 36 TVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT- 114 (745)
T ss_pred ceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-
Confidence 47889843332 4667878875 4488876 555699999999999999999999999999999999999777776
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcC
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQ 151 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~ 151 (359)
+++||.|.++++|-+ +++...+.+|+..|+++++-|++ .++|||.|.+|++|.- ++.+++|.+ .|..+++-|
T Consensus 115 ~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~ 189 (745)
T KOG0301|consen 115 LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLD 189 (745)
T ss_pred eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEec
Confidence 999999999999976 45666789999999999999988 8999999999999986 677788854 579999999
Q ss_pred Cc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE-----------------
Q 041916 152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL----------------- 213 (359)
Q Consensus 152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~----------------- 213 (359)
++ +++|+.||.|++|++ ++ ..+..+.+|+. -|.++...+++..+++++.|++++||
T Consensus 190 ~~~flScsNDg~Ir~w~~-~g-e~l~~~~ghtn----~vYsis~~~~~~~Ivs~gEDrtlriW~~~e~~q~I~lPttsiW 263 (745)
T KOG0301|consen 190 DSHFLSCSNDGSIRLWDL-DG-EVLLEMHGHTN----FVYSISMALSDGLIVSTGEDRTLRIWKKDECVQVITLPTTSIW 263 (745)
T ss_pred CCCeEeecCCceEEEEec-cC-ceeeeeeccce----EEEEEEecCCCCeEEEecCCceEEEeecCceEEEEecCccceE
Confidence 96 999999999999996 44 67788888866 89999988899999999999988774
Q ss_pred ----------EcCCCCCccccccCC
Q 041916 214 ----------VPGSGEPNFDSWVAN 228 (359)
Q Consensus 214 ----------~~~~~d~~~~~~~~~ 228 (359)
++|+.||.+++|...
T Consensus 264 sa~~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 264 SAKVLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEEeeCCCEEEeccCceEEEEEec
Confidence 668888999998875
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=9.5e-23 Score=184.01 Aligned_cols=210 Identities=17% Similarity=0.206 Sum_probs=173.4
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|.+|. .+..++.+|.+|..- .|++...++. |+|||.|.++++|-. +++...+.+|..+|++++.-|.+ .+++|
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEec
Confidence 467888 677789999999986 8888777776 999999999999986 57777899999999999999987 88999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEE-EcCCc-
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLD-FSQKG- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~-~s~~g- 153 (359)
|.|.+|++|.- ++.+.+|.+|.+-|+.+++-|++ .|++|+.||.|++||+ ++.++..+ ...+.+++ ..+++
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 99999999974 77899999999999999998875 4789999999999999 67777777 44688888 44555
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC----CCCCcccccc
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG----SGEPNFDSWV 226 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~----~~d~~~~~~~ 226 (359)
++++|.|++++||+.. .+.+.+. | ++..|+++.+-++|+ +++|++||.+++|... ..+..++.++
T Consensus 234 Ivs~gEDrtlriW~~~---e~~q~I~-l---PttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~evl~afd 302 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD---ECVQVIT-L---PTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASDEVLKAFD 302 (745)
T ss_pred EEEecCCceEEEeecC---ceEEEEe-c---CccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCHHHHHHHH
Confidence 8899999999999843 3444443 3 344899999999887 6789999999999765 4444555544
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.1e-23 Score=163.89 Aligned_cols=197 Identities=17% Similarity=0.215 Sum_probs=157.8
Q ss_pred ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 041916 16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~ 89 (359)
..|.+. ..+...-.|..||||+.|++|+|+.++.. +.+.++.+|.+||..++|.. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 356665 66666668999999999999999999764 46889999999999999965 7899999999999999997
Q ss_pred CCCc--ceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCc-e-ee----EeccCCceeEEEcCC---c---
Q 041916 90 TTAA--PLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKY-E-VL----QTLPGHAKTLDFSQK---G--- 153 (359)
Q Consensus 90 ~~~~--~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~-~-~~----~~~~~~i~~~~~s~~---g--- 153 (359)
.++. .......|...|++|+|.| .|-.|++++.||.|.+.+.++. . .. ...+-.+++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 7663 3445668999999999998 5678999999999999998864 1 11 111346799999885 3
Q ss_pred ----------eEEEEcCCcEEEEcCCCCCCc-cceeecccCCCCcceEEEEEeeCC----CEEEEEcCCCeEEEEEcC
Q 041916 154 ----------LLAVGTGSFVQILGDFSGSHN-YSRYMGHSMVKGYQIGKVSFRPYE----DVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 154 ----------l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~~~i~~~~ 216 (359)
|+++|.|+.|+||+...+.=. ...+.+|.. .|.+++|+|.- .+|++++.||.+-||...
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d----wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD----WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch----hhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 788999999999997665222 234677765 89999999975 478888899888777765
No 111
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=9e-23 Score=175.47 Aligned_cols=190 Identities=13% Similarity=0.139 Sum_probs=153.7
Q ss_pred eEEEEEecC-------CCEEEEEecCCeEEEEECCCCeE---EE------------------EEecCCCCeEEEEEcCCC
Q 041916 21 VLKLQFLRN-------HFLLASINKFGQLRYQDVTMGEI---VG------------------NFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 21 ~~~l~~s~~-------~~~l~s~~~dg~i~iwd~~~~~~---~~------------------~~~~~~~~v~~~~~sp~~ 72 (359)
+.|++|... |+++|.|+.|..|.|||+.-... .. .-.+|...|..|+|+..-
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 378888542 58999999999999999863211 11 122588888899998764
Q ss_pred -CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC---ceeeEeccCCceeE
Q 041916 73 -GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK---YEVLQTLPGHAKTL 147 (359)
Q Consensus 73 -~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~i~~~ 147 (359)
+.|||||.|.+|.+||+.+++|..++..|.+.|.++.|+| .+.+|++||.|++|.+.|+|. ......+.+.|-.+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 6899999999999999999999999999999999999999 577899999999999999995 23344558899999
Q ss_pred EEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEE
Q 041916 148 DFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILV 214 (359)
Q Consensus 148 ~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~ 214 (359)
+|.|.. ++++..||+|+-+|++..+.++..+..|.. +|.++++++.-. +|++++.++.+.+|.
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~----~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD----EISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccC----CcceEEecCCCCcceeeccccceEEEEe
Confidence 999987 666778899999999988889999999976 999999998765 344555555444443
No 112
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.2e-22 Score=165.27 Aligned_cols=205 Identities=16% Similarity=0.125 Sum_probs=155.3
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
..|+.|++.|.+||+|..||.|.|||+.|......+.+|..+|++++||++|+.|+++|.|..|.+||+..|.++..+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 69999999999999999999999999999998889999999999999999999999999999999999998876654431
Q ss_pred ---------cCC---------------------C----------------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 101 ---------HQG---------------------P----------------VSALAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 101 ---------h~~---------------------~----------------v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
|+. + -.+..|++.|+++++|...|.+.+||..+.
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~ 185 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL 185 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence 110 0 022346777899999999999999999999
Q ss_pred eeeEec---c-CCceeEEEcCCc--eEEEEcCCcEEEEcCCCC---CCccceeecc---cCCCCcceEEEEEeeCCCEEE
Q 041916 135 EVLQTL---P-GHAKTLDFSQKG--LLAVGTGSFVQILGDFSG---SHNYSRYMGH---SMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 135 ~~~~~~---~-~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~---~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~ 202 (359)
+++..+ . ..|.++.++..| ++.-+.|..|+.|++..- +.....-..| ...+..+-.+++|+.+|.|++
T Consensus 186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~ 265 (405)
T KOG1273|consen 186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVC 265 (405)
T ss_pred eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEE
Confidence 998887 2 468899999999 777889999999986521 0111111111 001223567899999999999
Q ss_pred EEcCCCe-EEEEEcCCCCCcccccc
Q 041916 203 IGHSMGW-SSILVPGSGEPNFDSWV 226 (359)
Q Consensus 203 ~~~~dg~-~~i~~~~~~d~~~~~~~ 226 (359)
+|+.... ..||-. +....+++..
T Consensus 266 a~s~~aHaLYIWE~-~~GsLVKILh 289 (405)
T KOG1273|consen 266 AGSARAHALYIWEK-SIGSLVKILH 289 (405)
T ss_pred eccccceeEEEEec-CCcceeeeec
Confidence 8885543 333332 2333455544
No 113
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.3e-23 Score=190.00 Aligned_cols=192 Identities=16% Similarity=0.285 Sum_probs=154.7
Q ss_pred EEEEEec-CCCEEEEEecCCeEEEEECCC---CeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceE
Q 041916 22 LKLQFLR-NHFLLASINKFGQLRYQDVTM---GEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 22 ~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
..+.|.. +.++|||++..|.|.+||+.. .+.+..|..|...++++.|++.. .+|++||.||+|++||++......
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 5566664 468999999999999999986 45667888999999999999865 789999999999999999999888
Q ss_pred EEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916 97 KMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDF 169 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~ 169 (359)
++.+....|++|.|+| .+.+|+++...|.+.+||+|... +...+ .++|.|+.|+|++ +++||.|++|+|||+.
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 8988889999999999 67889999999999999999753 44444 7899999999998 7778899999999975
Q ss_pred CCCCccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCCeEEEEEcCCCCCccccccC
Q 041916 170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
+. ........+ ..++|.+|.|-|...+. ++++.- .|..|.+|++
T Consensus 251 ~~-~~~~~~tIn---Tiapv~rVkWRP~~~~hLAtcsmv----------~dtsV~VWDv 295 (839)
T KOG0269|consen 251 DS-RAKPKHTIN---TIAPVGRVKWRPARSYHLATCSMV----------VDTSVHVWDV 295 (839)
T ss_pred CC-CccceeEEe---ecceeeeeeeccCccchhhhhhcc----------ccceEEEEee
Confidence 44 333323223 45699999999988753 333322 3555666665
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-22 Score=181.65 Aligned_cols=171 Identities=17% Similarity=0.247 Sum_probs=152.6
Q ss_pred CeEEEe-CCC--cEEEEeccCCCe-EEEEE-ecCCCEEEEEecCCeEEEEECCCC--eEEEE--------Ee-cCCCCeE
Q 041916 1 YPYIYN-RDG--TELHCLKEHGAV-LKLQF-LRNHFLLASINKFGQLRYQDVTMG--EIVGN--------FR-TGLGRTD 64 (359)
Q Consensus 1 ~v~iwd-~~g--~~~~~l~~h~~~-~~l~~-s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~--------~~-~~~~~v~ 64 (359)
+|.+|+ ..+ -++.++..|.+- .|+++ -++..++||||.|+.|.+||+.+| ..+.+ +. ++..+|.
T Consensus 96 TVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY 175 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY 175 (735)
T ss_pred eEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee
Confidence 589999 444 578899999996 99999 778899999999999999999987 23332 22 6778999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---c
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---P 141 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~ 141 (359)
+++.++.|..|++|+..+.+++||+++++.+..+.+|.+.|.++..++||+.++++|.||+|++||++..+++.++ .
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~ 255 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHK 255 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888 4
Q ss_pred CCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 142 GHAKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 142 ~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
..+.++..+|+- +++|+.||.|..=|+++.
T Consensus 256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 458888889877 899999999999998774
No 115
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=6.6e-22 Score=166.98 Aligned_cols=223 Identities=18% Similarity=0.316 Sum_probs=162.2
Q ss_pred CCC-eEEEEEecC--CCEEEEEecCCeEEEEECCC----------------CeEEEEEecCCCCeEEEEEcCCC-CEEEE
Q 041916 18 HGA-VLKLQFLRN--HFLLASINKFGQLRYQDVTM----------------GEIVGNFRTGLGRTDVMRVNPFN-GVVSL 77 (359)
Q Consensus 18 h~~-~~~l~~s~~--~~~l~s~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~sp~~-~~l~s 77 (359)
|.+ ++.+..++. ..+.|+-+..|.|.|||+.. .+++.++.+|.+.=..++|||-. ..|++
T Consensus 150 h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls 229 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS 229 (440)
T ss_pred cccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc
Confidence 444 477766664 46778888899999999852 24677888999888999999943 35888
Q ss_pred EeCCCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCce---eeEe--ccCCceeEE
Q 041916 78 GHSGGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYE---VLQT--LPGHAKTLD 148 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~---~~~~--~~~~i~~~~ 148 (359)
|..-+.|++|.+.++.- ...+.+|...|..++|||. ...|++||.||+|+|||+|.+. ++.. +.+.|+.|+
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVIS 309 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVIS 309 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEE
Confidence 88889999999888642 2345579999999999994 5679999999999999999972 3322 266899999
Q ss_pred EcCCc--eEEEEcCCcEEEEcCCC--CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccc
Q 041916 149 FSQKG--LLAVGTGSFVQILGDFS--GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDS 224 (359)
Q Consensus 149 ~s~~g--l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~ 224 (359)
|+.+- +++++.||++.|||++. ...++..+.-|.. +|+++.|+|... +++..++.|..+.+
T Consensus 310 Wnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~----pItsieW~p~e~-----------s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 310 WNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA----PITSIEWHPHED-----------SVIAASGEDNQITI 374 (440)
T ss_pred ccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC----CeeEEEeccccC-----------ceEEeccCCCcEEE
Confidence 99887 56667789999999875 3356667777765 999999999875 44555667777788
Q ss_pred ccCCCccChhhhchhhhhhhhhcCCCCceeeC
Q 041916 225 WVANPFETSKQRREKEVRSLLDKLPPETIMLN 256 (359)
Q Consensus 225 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~ 256 (359)
|++.--.......... ..-|.++||.++.+.
T Consensus 375 WDlsvE~D~ee~~~~a-~~~L~dlPpQLLFVH 405 (440)
T KOG0302|consen 375 WDLSVEADEEEIDQEA-AEGLQDLPPQLLFVH 405 (440)
T ss_pred EEeeccCChhhhcccc-ccchhcCCceeEEEe
Confidence 8764221111111111 111456777776554
No 116
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4.7e-21 Score=157.92 Aligned_cols=189 Identities=16% Similarity=0.232 Sum_probs=147.5
Q ss_pred ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 041916 16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd 88 (359)
.+|.+. +++.|.+.|+.+|+|+.|++|+|||... ..+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468887 9999999999999999999999999643 347788899999999999965 479999999999999997
Q ss_pred CC--C-------CcceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCC------ceeeEec----------c
Q 041916 89 PT--T-------AAPLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRK------YEVLQTL----------P 141 (359)
Q Consensus 89 ~~--~-------~~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~------~~~~~~~----------~ 141 (359)
-. + .....++....+.|++|.|.| -|-.||+++.||.|+||+.-. +...+.+ .
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 1 123445666788999999999 577899999999999997654 3333333 2
Q ss_pred CCceeEEEcCCc----eEEEEcCC------cEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCC----CEEEEE
Q 041916 142 GHAKTLDFSQKG----LLAVGTGS------FVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYE----DVLGIG 204 (359)
Q Consensus 142 ~~i~~~~~s~~g----l~~~~~d~------~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~ 204 (359)
.+..|+.|+|.. ++++|.+. .+.||....+... +..+.+|.. +|++++|.|+- .+|+++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d----pI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD----PIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC----cceeeeeccccCCceeeEEEe
Confidence 346899999876 77777665 8999985554322 334555544 99999999974 478999
Q ss_pred cCCC
Q 041916 205 HSMG 208 (359)
Q Consensus 205 ~~dg 208 (359)
+.||
T Consensus 246 ~kDg 249 (361)
T KOG2445|consen 246 TKDG 249 (361)
T ss_pred ecCc
Confidence 9998
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.6e-22 Score=167.20 Aligned_cols=203 Identities=16% Similarity=0.277 Sum_probs=172.9
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
.+..|.+|.+- +.++.......+.+++.|.+-+||.+.+|.|+..+.+|.+.|+++.|++.+.++++++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 34567788775 88887776778999999999999999999999999999999999999999999999999999999961
Q ss_pred ------CC----------------------------------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916 90 ------TT----------------------------------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIW 129 (359)
Q Consensus 90 ------~~----------------------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iw 129 (359)
.. ..|+..+.+|.+.|.+..|-..|..+++++.|.+-.+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 10 02455677899999999999999999999999999999
Q ss_pred EcCCceeeEeccCC---ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 130 DLRKYEVLQTLPGH---AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 130 d~~~~~~~~~~~~~---i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
|+.++.++..+.++ .+.++-+|.. +++.+.|.+.++||.+..-..+..+.+|.. .|+++.|..+.+
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd----tVTS~vF~~dd~----- 370 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD----TVTSVVFNTDDR----- 370 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc----ceeEEEEecCCc-----
Confidence 99999999999654 6778888888 667778999999998866666778888876 899999998764
Q ss_pred cCCCeEEEEEcCCCCCccccccCCCc
Q 041916 205 HSMGWSSILVPGSGEPNFDSWVANPF 230 (359)
Q Consensus 205 ~~dg~~~i~~~~~~d~~~~~~~~~~~ 230 (359)
+++|++|.++++|++...
T Consensus 371 --------vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 371 --------VVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred --------eeecCCCceEEEeeeccc
Confidence 456788888888987544
No 118
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=8.7e-22 Score=167.15 Aligned_cols=200 Identities=17% Similarity=0.227 Sum_probs=156.7
Q ss_pred EeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 14 CLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
.+.+|.++ ..++|+|. .+.|||||.|.+|.||.+..+ +++..+.+|...|.-++|+|.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45689987 99999994 578999999999999999754 3567788999999999999965 78999999999
Q ss_pred EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC----CceeEEEcCCc-eEEEE
Q 041916 84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----HAKTLDFSQKG-LLAVG 158 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~i~~~~~s~~g-l~~~~ 158 (359)
|.+|++.+++.+.++. |++.|.+++|+.||.+|++++.|..|++||.|+++.+..-.+ ....+.|-.+| +++.|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999988887 999999999999999999999999999999999999887722 34667788888 77766
Q ss_pred ----cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916 159 ----TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 159 ----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~ 228 (359)
++..+-+||..+-..++....-. ....|.=--|.|+..++ +..|-+|++|+-|++.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD---tSnGvl~PFyD~dt~iv-----------Yl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD---TSNGVLLPFYDPDTSIV-----------YLCGKGDSSIRYFEIT 294 (472)
T ss_pred cccccccceeccCcccccCcceeEEec---cCCceEEeeecCCCCEE-----------EEEecCCcceEEEEec
Confidence 45799999966544432211111 22235545566666543 4455566666666553
No 119
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=1e-21 Score=160.89 Aligned_cols=210 Identities=13% Similarity=0.128 Sum_probs=167.6
Q ss_pred ccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCe------E----EEE-----EecCCCCeEEEEEcC-CCCEEEE
Q 041916 16 KEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGE------I----VGN-----FRTGLGRTDVMRVNP-FNGVVSL 77 (359)
Q Consensus 16 ~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~------~----~~~-----~~~~~~~v~~~~~sp-~~~~l~s 77 (359)
+.|.+. +++...+ .|+|+++|+.||.|.+||+..-. . +.. -.+|.-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 457665 9999988 48999999999999999997532 0 111 125777899999999 5678999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcC
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQ 151 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~ 151 (359)
++.|.+++|||.++.+....|. .++.|.+-+++|- .-++|+|..|-.|++.|+.+|..-+++. +.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988777664 5678889999982 3457888889999999999999988884 4689999999
Q ss_pred Cc---eEEEEcCCcEEEEcCCCCCCccceeecccC----------CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 152 KG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSM----------VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 152 ~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
.. +++++.||.|++||++....+...+..|+. .+.+.|.+++|+.++.++++++.|..+++|.+.++
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 88 677889999999998765333333333321 13458999999999999999999999999999888
Q ss_pred CCcccccc
Q 041916 219 EPNFDSWV 226 (359)
Q Consensus 219 d~~~~~~~ 226 (359)
.++++-+-
T Consensus 279 ~ntl~~~g 286 (397)
T KOG4283|consen 279 RNTLREFG 286 (397)
T ss_pred cccccccc
Confidence 88766553
No 120
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.3e-21 Score=178.40 Aligned_cols=189 Identities=14% Similarity=0.152 Sum_probs=159.3
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe
Q 041916 26 FLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV 105 (359)
Q Consensus 26 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v 105 (359)
+..++.+|++|+.+++|.+|....+..-..+.-..-++++++|+.+|.++|.||.|-.|++.++.+......+.+|.++|
T Consensus 62 ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV 141 (933)
T KOG1274|consen 62 IACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV 141 (933)
T ss_pred EeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce
Confidence 33456699999999999999999887554454455789999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~ 172 (359)
.++.|+|.+++||+.+.||.|++||+.++.+..++. ..+..++|+|+| +++.+.|+.|.+|+....
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w- 220 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW- 220 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc-
Confidence 999999999999999999999999999988766652 235789999996 999999999999995554
Q ss_pred CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 173 HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
.....+.... ..+.+..++|+|+|.|||+++.+|.+.+|.+-.
T Consensus 221 e~~f~Lr~~~--~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 221 ELQFKLRDKL--SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeheeecccc--cccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 4444443322 233499999999999999999999888887663
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=7.8e-21 Score=156.26 Aligned_cols=210 Identities=14% Similarity=0.113 Sum_probs=163.8
Q ss_pred CeEEEe--CCCcEE-EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--E
Q 041916 1 YPYIYN--RDGTEL-HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--V 74 (359)
Q Consensus 1 ~v~iwd--~~g~~~-~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~ 74 (359)
+|++|+ .+|..+ +....|.++ .+++|+.||..+++|+.|+.+++||+.+++ +..+..|.++|.++.|-+... .
T Consensus 51 tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~c 129 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQC 129 (347)
T ss_pred ceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcce
Confidence 589999 445544 344567787 999999999999999999999999999995 667888999999999987665 8
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE-ec----cCCceeEEE
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ-TL----PGHAKTLDF 149 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~----~~~i~~~~~ 149 (359)
|++||.|.+|+.||+++..++.++.- ++.+.++.. -..+++++..++.|.+|+++++.... .. .-.+.|++.
T Consensus 130 l~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~ 206 (347)
T KOG0647|consen 130 LVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVAC 206 (347)
T ss_pred eEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEE
Confidence 99999999999999999999888763 556666655 33578889999999999998754322 22 346789998
Q ss_pred cCCc--eEEEEcCCcEEEEcCCCC-CCccceeecccC----CC-CcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 150 SQKG--LLAVGTGSFVQILGDFSG-SHNYSRYMGHSM----VK-GYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 150 s~~g--l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~----~~-~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.++. ++.++..|.+.|..+..+ ...-.++..|.. .. -+.|++|+|+|....|+++++||...+|.
T Consensus 207 f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 207 FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 8877 888888999998876553 233345556642 01 25789999999998888888777666665
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=169.56 Aligned_cols=224 Identities=19% Similarity=0.248 Sum_probs=176.4
Q ss_pred eEEEe-CCCcEEEEeccCCC-e-EEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGA-V-LKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~-~-~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+.+|| .+|..+.++++... . .++... .+.+++++. .-..|.+|.+..........--.++|.+++-+|+|.+|+.
T Consensus 20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~a 98 (476)
T KOG0646|consen 20 CIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLA 98 (476)
T ss_pred eeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEe
Confidence 67899 99999988887632 2 333222 224555554 3558899998755444333334578999999999999999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------ceeeEeccC---Cce
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---------YEVLQTLPG---HAK 145 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~~~---~i~ 145 (359)
|...|.|++|.+.+|..+..+.+|-..|+|+.|+-||.+|+|||.||.|.+|++.. -.+++.|.+ +|+
T Consensus 99 g~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsIT 178 (476)
T KOG0646|consen 99 GTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSIT 178 (476)
T ss_pred ecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeE
Confidence 98999999999999999999999999999999999999999999999999998742 346666743 688
Q ss_pred eEEEcCCc----eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE-----------
Q 041916 146 TLDFSQKG----LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS----------- 210 (359)
Q Consensus 146 ~~~~s~~g----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~----------- 210 (359)
++...+.| +++++.|.++++||+..+ ..+..+... .++.+++.+|.++.+.+|+.+|.+
T Consensus 179 Dl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g-~LLlti~fp-----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~ 252 (476)
T KOG0646|consen 179 DLQIGSGGTNARLYTASEDRTIKLWDLSLG-VLLLTITFP-----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQ 252 (476)
T ss_pred EEEecCCCccceEEEecCCceEEEEEeccc-eeeEEEecC-----CcceeEEEcccccEEEecCCcceEEeeehhcCCcc
Confidence 88888776 899999999999998777 444433322 279999999999999999999832
Q ss_pred -------------------------------------EEEEcCCCCCccccccCCCccC
Q 041916 211 -------------------------------------SILVPGSGEPNFDSWVANPFET 232 (359)
Q Consensus 211 -------------------------------------~i~~~~~~d~~~~~~~~~~~~~ 232 (359)
.++++|+.||.+.+|++...+.
T Consensus 253 ~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 253 SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred cccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence 3478999999999999865443
No 123
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=4.1e-21 Score=165.34 Aligned_cols=193 Identities=20% Similarity=0.209 Sum_probs=146.8
Q ss_pred cCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc
Q 041916 17 EHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAA 93 (359)
Q Consensus 17 ~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~ 93 (359)
+|+++ .+|+|+.+ .+.|||||.|.+|.+||+.+|++..++..|.+.|.++.|+|.. .+|++|+.|++|.+.|++...
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~ 320 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS 320 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc
Confidence 57776 78888875 5789999999999999999999999999999999999999965 789999999999999999543
Q ss_pred ceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc---eEEEEcCCcEEE
Q 041916 94 PLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQI 165 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i 165 (359)
.....=...+.|-.++|+|.. ..+++++.||+|+-+|+|+. +++.++ .++|++|++++.- +.+++.++.|.+
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vkl 400 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKL 400 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEE
Confidence 322211235789999999954 45778889999999999985 788877 5689999998865 777889999999
Q ss_pred EcCCCCCCccceeecccCCCCcceEEEEEeeCCCE-EEEEcCCCeEEE
Q 041916 166 LGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV-LGIGHSMGWSSI 212 (359)
Q Consensus 166 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~~dg~~~i 212 (359)
|++..... .....|.. .-+...|++++|+-.+ |++|+..+..++
T Consensus 401 w~~~~~~~--~~v~~~~~-~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 401 WKFDVDSP--KSVKEHSF-KLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred EeecCCCC--cccccccc-cccceeecccCCCcceEEEecCccceEEE
Confidence 99755422 22223332 2235677788887653 334333333333
No 124
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=2.7e-21 Score=167.13 Aligned_cols=200 Identities=16% Similarity=0.151 Sum_probs=168.0
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
|.||+ .+++.++++.+|.+. .+++|--...-|++++.|++|++|+++....+.++.+|++.|..+....-++.+.+|+
T Consensus 226 v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGg 305 (479)
T KOG0299|consen 226 VQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGG 305 (479)
T ss_pred EEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEecc
Confidence 67999 999999999999997 9999998888899999999999999998888899999999999999888888888899
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cC--------Cc
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PG--------HA 144 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~--------~i 144 (359)
.|+++++|++... ....+.+|.+.+-|++|-.+ ..|++|+.||.|.+|++-..+++.+. +. .|
T Consensus 306 rDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wi 383 (479)
T KOG0299|consen 306 RDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWI 383 (479)
T ss_pred ccceeEEEecccc-ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccce
Confidence 9999999999543 34457789999999999754 57899999999999999988887765 12 57
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
++++..|.. +++++.+|.|++|.+..+...+.++.... -.+.|++++|+++|..+++|.
T Consensus 384 tsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 384 TSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred eeeEecccCceEEecCCCCceEEEEecCCccccceeeecc--cccEEEEEEEccCCCEEEEec
Confidence 899999987 55667899999999887755555444332 123699999999999776653
No 125
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=4e-21 Score=167.53 Aligned_cols=194 Identities=21% Similarity=0.339 Sum_probs=165.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCC-EEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNG-VVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~-~l~ 76 (359)
+|.||| ....+.+.+++|... +++.|+....|||+++..|.|.|..+.++.....|.... ..|.-+.|+|..+ +|.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~ 181 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLS 181 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeE
Confidence 589999 655566788999986 999999999999999999999999999998877787653 4566899999875 567
Q ss_pred EEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQK 152 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~ 152 (359)
+++.+|.|.+||+....+...+. .|..+...|+|+|. ..+|++.+.|..|.+||++.......+ ..+.+.++|+++
T Consensus 182 ~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 182 IASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSEC 261 (673)
T ss_pred eeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCC
Confidence 78999999999999888776654 89999999999995 456889999999999999987666555 678999999999
Q ss_pred c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916 153 G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 153 g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
| ++++...|.|..||++....++..+..|.. .|++++|-|.-
T Consensus 262 G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~----sVt~vafq~s~ 305 (673)
T KOG4378|consen 262 GTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA----SVTRVAFQPSP 305 (673)
T ss_pred ceEEEeecCCceEEEEecccCCCCceEeeeccc----ceeEEEeeecc
Confidence 9 566667899999999988888888888866 79999999865
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=2.2e-19 Score=158.67 Aligned_cols=211 Identities=11% Similarity=0.187 Sum_probs=154.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|++|| .++..+..+..+..+.+++|+|++..+ ++++.++.|++||+.+++.+..+..+.. +..++|+|+++.++++
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~ 90 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIA 90 (300)
T ss_pred EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEE
Confidence 378999 788888999888777889999999876 5667889999999999988877765543 5678999999877554
Q ss_pred -eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916 79 -HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC-KIKIWDLRKYEVLQTL--PGHAKTLDFSQKG- 153 (359)
Q Consensus 79 -~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g- 153 (359)
+.|+.|.+||+.+...+..+.. ...+.+++|+|+|.++++++.++ .+.+||..++..+... ...+.+++|+|+|
T Consensus 91 ~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 91 NEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGK 169 (300)
T ss_pred cCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCC
Confidence 5689999999998877766653 23468899999999999988765 5778899988776544 3456889999999
Q ss_pred -eEEEE-cCCcEEEEcCCCCCCccceeeccc--CC-CCcceEEEEEeeCCCEEEEE-cCCCeEEEEE
Q 041916 154 -LLAVG-TGSFVQILGDFSGSHNYSRYMGHS--MV-KGYQIGKVSFRPYEDVLGIG-HSMGWSSILV 214 (359)
Q Consensus 154 -l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~p~~~~l~~~-~~dg~~~i~~ 214 (359)
+++++ .++.|.+||+.++ .....+..+. .. .......++|+|++++++++ ..++.+.+|.
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 43444 5899999998766 3333332111 00 01124568899999975543 3344444443
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.2e-22 Score=184.02 Aligned_cols=193 Identities=19% Similarity=0.304 Sum_probs=166.2
Q ss_pred ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916 16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~ 94 (359)
-.|... .++..-..++.+++|+.|..+-+|.+.....+..+.+|.++|.++.|+++..+|++|+.+|+|++||+...+.
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~ 104 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI 104 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh
Confidence 346665 7777666778999999999999999988888888999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---CceeEEEcCCc-eE-EEEcCCcEEEEcCC
Q 041916 95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---HAKTLDFSQKG-LL-AVGTGSFVQILGDF 169 (359)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~i~~~~~s~~g-l~-~~~~d~~i~i~d~~ 169 (359)
++++.+|...+.++.|+|.+.++++|+.|+.+++||++...|.+.+.+ .+.++.|+|+| ++ .++.|..++|||+.
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 999999999999999999999999999999999999998888888854 46889999999 44 45567999999965
Q ss_pred CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.+ .....|..|.+ .+.++.|+|..-.++.|+.|+.+.+|
T Consensus 185 ag-k~~~ef~~~e~----~v~sle~hp~e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 185 AG-KLSKEFKSHEG----KVQSLEFHPLEVLLAPGSSDRTVRFW 223 (825)
T ss_pred cc-ccccccccccc----cccccccCchhhhhccCCCCceeeee
Confidence 55 77788888876 89999999988666665555554443
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.87 E-value=2.4e-19 Score=158.39 Aligned_cols=206 Identities=13% Similarity=0.124 Sum_probs=151.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|++|| .+++.+..+..+..+..++|+|+++.++++ +.++.|.+||+.+++.+..+..+ ..+.+++|+|++.+++++
T Consensus 54 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~ 132 (300)
T TIGR03866 54 TIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNT 132 (300)
T ss_pred eEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEE
Confidence 378999 778888778777667788999999877554 56899999999998887777643 346889999999999988
Q ss_pred eCCC-eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceeeEecc--------C--Ccee
Q 041916 79 HSGG-TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKYEVLQTLP--------G--HAKT 146 (359)
Q Consensus 79 ~~dg-~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~--------~--~i~~ 146 (359)
+.++ .+.+||+.++.....+.. ...+.+++|+|+|.+|+++ ..++.|.+||+.+++.+..+. . ....
T Consensus 133 ~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (300)
T TIGR03866 133 SETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVG 211 (300)
T ss_pred ecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccc
Confidence 8775 467789988776555432 2345789999999988655 468999999999988766542 1 1356
Q ss_pred EEEcCCc-e-E-EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEE
Q 041916 147 LDFSQKG-L-L-AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILV 214 (359)
Q Consensus 147 ~~~s~~g-l-~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~ 214 (359)
++|+|+| . + +.+.++.+.+||+.++ .....+ .+. ..+.+++|+|+|.+|+++. .+|.+.+|.
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~~~~-~~~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTY-EVLDYL-LVG----QRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCC-cEEEEE-EeC----CCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 8899999 3 3 3445678999997655 333322 221 2688999999999877653 345444444
No 129
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.5e-20 Score=151.73 Aligned_cols=213 Identities=17% Similarity=0.197 Sum_probs=161.5
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
++++||-....+...-.|..+ .+++|.++ ..+++|+.||.|+.+|+.++.. ..+..|..+|.||.+++....+++||
T Consensus 36 slrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 36 SLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred cEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcc
Confidence 466777333333333356666 99999874 5688999999999999998764 45667999999999999889999999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-----ccCCceeEEEcCCc-
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-----LPGHAKTLDFSQKG- 153 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-----~~~~i~~~~~s~~g- 153 (359)
.|++|.+||++.......+.. ...|.++.. .|+.|++|+.|..|.+||+|+.....+ ++-.+.|+++-|++
T Consensus 114 WD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e 190 (323)
T KOG1036|consen 114 WDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE 190 (323)
T ss_pred cCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCC
Confidence 999999999997655555543 336877766 577899999999999999998654332 24568999999965
Q ss_pred -eEEEEcCCcEEEEcCCCC---CCccceeecccCC-----CCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 154 -LLAVGTGSFVQILGDFSG---SHNYSRYMGHSMV-----KGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+++++-+|.|.+=.+... ......+..|... -..+|++++|+|-...|++|+.||.+.+|.....
T Consensus 191 Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 191 GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 999999998776543332 1222344555321 1248999999999999999999999999986543
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-19 Score=163.73 Aligned_cols=208 Identities=14% Similarity=0.125 Sum_probs=168.6
Q ss_pred CeEEEe--CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN--RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd--~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|.||+ ..--+...+.++.+. -+++|++. ..|.+.+.+|.|.-||+.+++....+....+.|++++.+|.+..++
T Consensus 48 ~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~ 126 (691)
T KOG2048|consen 48 NIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEG-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILA 126 (691)
T ss_pred cEEEEccCCCceeeEEEecCCCCceeeEEEccC-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEE
Confidence 578999 333456677777663 89999954 5577788899999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceE--EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cC----C
Q 041916 77 LGHSGGTVTMWKPTTAAPLI--KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PG----H 143 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~----~ 143 (359)
.|+.||.+..++...+.... .+....+.|.+++|+|++..+++|+.||.|++||...+..++.. .. -
T Consensus 127 IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 127 IGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTI 206 (691)
T ss_pred eecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceE
Confidence 99999988888776664432 23345689999999999999999999999999999998776632 11 2
Q ss_pred ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 144 AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 144 i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
|.++.|-.++ ++++.+.|+|.+||...+ ...+....|.. .|.+++..++++++++++.|+.+..+.
T Consensus 207 VWSv~~Lrd~tI~sgDS~G~V~FWd~~~g-TLiqS~~~h~a----dVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 207 VWSVLFLRDSTIASGDSAGTVTFWDSIFG-TLIQSHSCHDA----DVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred EEEEEEeecCcEEEecCCceEEEEcccCc-chhhhhhhhhc----ceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 4566666777 777778899999997776 66676666655 899999999999999999998654443
No 131
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.1e-19 Score=142.26 Aligned_cols=194 Identities=15% Similarity=0.204 Sum_probs=154.3
Q ss_pred eccCCCe-EEEEEecC----CCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 15 LKEHGAV-LKLQFLRN----HFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 15 l~~h~~~-~~l~~s~~----~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
|.-|.+. ..++|..+ +.+|++++. |..|++-|..+|+..+.+.+|.+.|.++ ++-+|.++++|+.|.+|++||
T Consensus 132 ~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 132 FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEe
Confidence 4557776 89999653 577888654 7889999999999999999999998776 233578999999999999999
Q ss_pred CCCCcceEEEe--cc-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEE
Q 041916 89 PTTAAPLIKML--CH-----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLA 156 (359)
Q Consensus 89 ~~~~~~~~~~~--~h-----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~ 156 (359)
++-..++.++. .| .+.|.++++.|.|++|++|..|.+..+||+|.+++++.+ ...|.|+.|||.. +++
T Consensus 211 lrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt 290 (350)
T KOG0641|consen 211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLT 290 (350)
T ss_pred eeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEE
Confidence 99888877764 12 357899999999999999999999999999999999998 4579999999998 889
Q ss_pred EEcCCcEEEEcCCCCC---CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 157 VGTGSFVQILGDFSGS---HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 157 ~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++.|..|++-|+...- -+......|.. .+..+.|+|..--+++.+.|.+..+|
T Consensus 291 ~syd~~ikltdlqgdla~el~~~vv~ehkd----k~i~~rwh~~d~sfisssadkt~tlw 346 (350)
T KOG0641|consen 291 CSYDMKIKLTDLQGDLAHELPIMVVAEHKD----KAIQCRWHPQDFSFISSSADKTATLW 346 (350)
T ss_pred ecccceEEEeecccchhhcCceEEEEeccC----ceEEEEecCccceeeeccCcceEEEe
Confidence 9999999999975431 12233344533 78889999988655555555444443
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.4e-20 Score=172.53 Aligned_cols=200 Identities=14% Similarity=0.177 Sum_probs=164.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|.+|. .++..-..|...+-+ ++++|+.+|.++|.||.|-.|++.++.+......+++|.++|.++.|+|.+.+||+.
T Consensus 77 tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred eEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 456666 555554455555566 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEec--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCce
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLC--------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAK 145 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~--------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~ 145 (359)
+.||.|++||+.++....++.+ ....+..++|+|+|..++..+.|+.|++|+..++.....+. ..+.
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 9999999999998876655542 13456789999998889999999999999999999887772 2378
Q ss_pred eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
+++|+|.| +++++.+|.|.|||..+- . .|. ....|++++|.|++..+..-...|.
T Consensus 237 ~~~wsPnG~YiAAs~~~g~I~vWnv~t~----~---~~~--~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLDGQILVWNVDTH----E---RHE--FKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred EEEEcCCCcEEeeeccCCcEEEEecccc----h---hcc--ccceeEEEecCCCCCeeEEEeeccc
Confidence 99999999 566668999999997652 1 132 3447999999999987766555553
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.86 E-value=3.1e-20 Score=171.09 Aligned_cols=206 Identities=16% Similarity=0.195 Sum_probs=171.5
Q ss_pred eEEEe-CCCcE-EEEeccC------CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcC
Q 041916 2 PYIYN-RDGTE-LHCLKEH------GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd-~~g~~-~~~l~~h------~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp 70 (359)
.+.|+ ..... .+.|... ..+++++.++.|++.+.|+..|+|-+|++++|-...++ ..|.++|++++...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~ 503 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG 503 (910)
T ss_pred EEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC
Confidence 46787 33333 3444433 33499999999999999999999999999999988888 58999999999988
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916 71 FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL 147 (359)
Q Consensus 71 ~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~ 147 (359)
-++.+++++.+|.+.+||.....++..+.. ...+.++..+.....++.+..|-.|+++|+.+.+.++.| .+.|+++
T Consensus 504 ~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 504 TNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 889999999999999999998887777653 345788999998889999999999999999999999988 4579999
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe-EEEEE
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW-SSILV 214 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~-~~i~~ 214 (359)
+||||| +++++.|++|++||+.++ ..+..+.-. .+++++.|+|+|++|++.+.|+. +.+|.
T Consensus 583 ~FS~DgrWlisasmD~tIr~wDlpt~-~lID~~~vd-----~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 583 TFSPDGRWLISASMDSTIRTWDLPTG-TLIDGLLVD-----SPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EeCCCCcEEEEeecCCcEEEEeccCc-ceeeeEecC-----CcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999 888999999999999888 344433322 38999999999999999999853 44554
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.4e-20 Score=161.40 Aligned_cols=209 Identities=17% Similarity=0.287 Sum_probs=163.5
Q ss_pred CeEEEe-CCCcE--EEEeccCCC--eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYN-RDGTE--LHCLKEHGA--VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd-~~g~~--~~~l~~h~~--~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|.|.|| .+++. +..+.++.. ......||++++|+..|..|.|.+....+++.+.+++- .+.|..++|+.++..|
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEE
Confidence 578999 66554 444555553 37888999999999999999999999999999998884 4789999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCe--EEEEEcCCCCEEEEEeCCCeEEEEEcCC------ceeeEec---cCCc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPV--SALAFHPNGHLMATSGKECKIKIWDLRK------YEVLQTL---PGHA 144 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v--~~i~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~---~~~i 144 (359)
++++.+|.|.+||+++..++..+.. .+.| ++++.+++|.|||+|+..|.|.|||..+ .+|+..+ ...|
T Consensus 360 ~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I 438 (514)
T KOG2055|consen 360 LASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI 438 (514)
T ss_pred EEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee
Confidence 9999999999999999988888763 2323 5677789999999999999999999654 3566555 5689
Q ss_pred eeEEEcCCc-eEEE-E--cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 145 KTLDFSQKG-LLAV-G--TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 145 ~~~~~s~~g-l~~~-~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++|+|+|++ +++. + ..+.+++-.+.+. ....-+..... +-+.|+|++|+|.+.+|++|..+|.+.+|
T Consensus 439 tsl~Fn~d~qiLAiaS~~~knalrLVHvPS~-TVFsNfP~~n~-~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 439 TSLQFNHDAQILAIASRVKKNALRLVHVPSC-TVFSNFPTSNT-KVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred eeeeeCcchhhhhhhhhccccceEEEeccce-eeeccCCCCCC-cccceEEEEecCCCceEEeecCCCceeeE
Confidence 999999999 4443 3 3578888876543 22333332222 33469999999999999998888866665
No 135
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=3e-20 Score=152.44 Aligned_cols=210 Identities=18% Similarity=0.286 Sum_probs=161.5
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VV 75 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 75 (359)
|++||| ++-++...|+-...+.+-++|| .+.++|+|..+-.|++-|+.+|.+.+.+.+|.+.|.++.|+|... .|
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL 204 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVL 204 (397)
T ss_pred eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEE
Confidence 689999 8888888888888888888888 367889999999999999999999999999999999999999775 58
Q ss_pred EEEeCCCeEEEEeCCCC-cceEEE--------------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eEe
Q 041916 76 SLGHSGGTVTMWKPTTA-APLIKM--------------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQT 139 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~-~~~~~~--------------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~ 139 (359)
++|+.||.|++||++.. .++..+ .+|.+.|+.++|..+|.++++++.|..+++|+..+|+. +..
T Consensus 205 atgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~ 284 (397)
T KOG4283|consen 205 ATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE 284 (397)
T ss_pred EecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc
Confidence 89999999999998743 222222 36778899999999999999999999999999988753 222
Q ss_pred c----cCCcee----EEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 140 L----PGHAKT----LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 140 ~----~~~i~~----~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
+ ...-.+ +.--..+ ++..-.++.+.++++..+ ..+..+..|.. .|.+.+|.|+-+.+.+|..|+.+
T Consensus 285 ~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg-s~ir~l~~h~k----~i~c~~~~~~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 285 FGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG-SFVRRLSTHLK----RINCAAYRPDFEQCFTGDMNGNI 359 (397)
T ss_pred cccccccccccceEEEeecccceEEEEecCCeEEEEEccCc-eEEEeeecccc----eeeEEeecCchhhhhccccCCcc
Confidence 2 111111 2211122 444556688999987766 56667777744 89999999988777666666554
Q ss_pred EEEEc
Q 041916 211 SILVP 215 (359)
Q Consensus 211 ~i~~~ 215 (359)
..|.+
T Consensus 360 ~~w~p 364 (397)
T KOG4283|consen 360 YMWSP 364 (397)
T ss_pred ccccc
Confidence 44444
No 136
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.9e-20 Score=165.59 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=156.4
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC--EEEEEeC-------
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG--VVSLGHS------- 80 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~sg~~------- 80 (359)
+-..+++|.+. .+++..|.|.+|++|+.||+|+||.+.+|.|+..+.. .+.|.|++|+|.+. +||++-.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34567899997 9999999999999999999999999999999998874 35789999998763 3443322
Q ss_pred -------------------------CCeEEEEeCC--------------CCcceEEEe----------------------
Q 041916 81 -------------------------GGTVTMWKPT--------------TAAPLIKML---------------------- 99 (359)
Q Consensus 81 -------------------------dg~v~lwd~~--------------~~~~~~~~~---------------------- 99 (359)
++.+-.|.-. ..+.+..+.
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 1223344311 011111111
Q ss_pred -------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c--CCceeEEEcCCc--eEEEEcCC
Q 041916 100 -------------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P--GHAKTLDFSQKG--LLAVGTGS 161 (359)
Q Consensus 100 -------------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~--~~i~~~~~s~~g--l~~~~~d~ 161 (359)
...+.|.++.|+|...+|++++. ..|++||+.....+..+ + ..|.+++++|.| +++++.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 12456889999999999999886 67999999987777666 3 368999999988 99999999
Q ss_pred cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+..||+..+.++++.+.-|.. .+++|+|++.-.++++|+.||.+.++.
T Consensus 630 k~~WfDldlsskPyk~lr~H~~----avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEK----AVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhh----hhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999888888898888876 899999999999999999999877765
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=3.7e-20 Score=165.97 Aligned_cols=216 Identities=21% Similarity=0.235 Sum_probs=158.8
Q ss_pred EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 041916 14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~ 89 (359)
....|..+ ..+.|.|....|++++.|.++++||+.++.++.. +.+|.+.|.++||.|.+ ..|++|+.||.|.|||+
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 34568887 9999999667899999999999999999988776 88999999999999976 68999999999999998
Q ss_pred CCCc--------------------c-------eEEEeccCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEEcCCceeeE
Q 041916 90 TTAA--------------------P-------LIKMLCHQGPVSA---LAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQ 138 (359)
Q Consensus 90 ~~~~--------------------~-------~~~~~~h~~~v~~---i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~ 138 (359)
+... + +....++...|.+ +.+..|...||++|. |+.|++||+|......
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence 5321 1 1112234444554 555678889999887 9999999999754332
Q ss_pred ec--------c------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 139 TL--------P------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 139 ~~--------~------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
.. + -.+.++.....| +++.+.|+.|++|++.+-.. +...+.++.. .. ....-..+|++.+|
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~s-f~vks~lSpd~~~l 332 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SS-FYVKSELSPDDCSL 332 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccc-ce-eeeeeecCCCCceE
Confidence 22 1 135778888878 88888899999999866422 3333433321 11 12223558999999
Q ss_pred EEEcCCCeEEE--------------------------------EEcCCCCCccccccCCCcc
Q 041916 202 GIGHSMGWSSI--------------------------------LVPGSGEPNFDSWVANPFE 231 (359)
Q Consensus 202 ~~~~~dg~~~i--------------------------------~~~~~~d~~~~~~~~~~~~ 231 (359)
++|+.|+...+ +++++.|..+++|++.+..
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 99999985554 3556888899999886543
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=8e-21 Score=165.89 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=165.4
Q ss_pred CeEEEe-CCC--cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDG--TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g--~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|-||| ..- .....+...... .+++.+||.++.++|..||.|.|||+.+...++.|++|...+.||..++||..|-
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW 567 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW 567 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee
Confidence 477899 322 222333333333 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeEeccCCceeEEEcCCc-
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQTLPGHAKTLDFSQKG- 153 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~i~~~~~s~~g- 153 (359)
+|+-|.+|+.||++++..+.... ..+.|.++.++|.+.++++|-.++.+.+....... .++.....|.++.|.+.|
T Consensus 568 TGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGk 646 (705)
T KOG0639|consen 568 TGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGK 646 (705)
T ss_pred cCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCc
Confidence 99999999999999987766543 46789999999999999999999998888776533 233336779999999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+++.|.|+.+..|.+..+....+.- ..++|.++..+.|.+++++|+.|....++
T Consensus 647 wfvStGkDnlLnawrtPyGasiFqsk------E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 647 WFVSTGKDNLLNAWRTPYGASIFQSK------ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred eeeecCchhhhhhccCccccceeecc------ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 7888999999999876664333322 23389999999999888887777544443
No 139
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.85 E-value=3.1e-20 Score=168.45 Aligned_cols=191 Identities=16% Similarity=0.135 Sum_probs=158.2
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEeCCCeEEEEeCCCC-cc
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF---NGVVSLGHSGGTVTMWKPTTA-AP 94 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~sg~~dg~v~lwd~~~~-~~ 94 (359)
.++.+++.+|+|++||+|..-|.|+||++..-.....+..|...|.|+.|+-. ..+||+++.|..|+|||+... .+
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l 539 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDL 539 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccch
Confidence 34589999999999999999999999999998888899999999999999753 478999999999999997532 23
Q ss_pred eEEEeccCCC-------------------------------------------------eEEEEEcCCCCEEEEEeCCCe
Q 041916 95 LIKMLCHQGP-------------------------------------------------VSALAFHPNGHLMATSGKECK 125 (359)
Q Consensus 95 ~~~~~~h~~~-------------------------------------------------v~~i~~~~~~~~l~~~~~d~~ 125 (359)
+.++.+|... +.++++.|...++++++.|..
T Consensus 540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn 619 (1080)
T KOG1408|consen 540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN 619 (1080)
T ss_pred hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence 3444444333 456777777888999999999
Q ss_pred EEEEEcCCceeeEecc------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 126 IKIWDLRKYEVLQTLP------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 126 i~iwd~~~~~~~~~~~------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
|+|||+.+++.++.|. +....+...|.| +++.+.|.++.+||..++ +++....+|.. .|+.+.|.+|
T Consensus 620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg-EcvA~m~GHsE----~VTG~kF~nD 694 (1080)
T KOG1408|consen 620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG-ECVAQMTGHSE----AVTGVKFLND 694 (1080)
T ss_pred eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc-hhhhhhcCcch----heeeeeeccc
Confidence 9999999999999993 456788899999 555668999999998777 78888889866 8999999999
Q ss_pred CCEEEEEcCCCeEEEEE
Q 041916 198 EDVLGIGHSMGWSSILV 214 (359)
Q Consensus 198 ~~~l~~~~~dg~~~i~~ 214 (359)
.+.|++.+.||.+.+|-
T Consensus 695 CkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWK 711 (1080)
T ss_pred chhheeecCCceEEEEE
Confidence 98888777666555554
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.9e-20 Score=159.87 Aligned_cols=185 Identities=16% Similarity=0.227 Sum_probs=155.0
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEecc
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH 101 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h 101 (359)
.|++......|+++|+..+.|+|||++..-+.+.+++|...|+++.++-...+||+++..|-|.|-.+.++.....|...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 67766666789999999999999999976677888999999999999998999999999999999999988877777644
Q ss_pred CC-CeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCC
Q 041916 102 QG-PVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 102 ~~-~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~ 172 (359)
.+ .|+-+.|+|..+. |.+++.+|.|.+||+....+...+ ..+...|+|+|.. ++++|.|..|.+||....
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~- 241 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ- 241 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc-
Confidence 33 4668999997665 677899999999999988888777 5678999999988 778999999999997644
Q ss_pred Ccccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 173 HNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 173 ~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.....+ ..| +..+++|.++|.+|++|+..|-+..+
T Consensus 242 ~s~~~l~y~~------Plstvaf~~~G~~L~aG~s~G~~i~Y 277 (673)
T KOG4378|consen 242 ASTDRLTYSH------PLSTVAFSECGTYLCAGNSKGELIAY 277 (673)
T ss_pred cccceeeecC------CcceeeecCCceEEEeecCCceEEEE
Confidence 333333 233 89999999999999999999955544
No 141
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=6.5e-19 Score=146.59 Aligned_cols=212 Identities=19% Similarity=0.246 Sum_probs=162.0
Q ss_pred eEEEe--CCC--cEEEEecc--CCCe-EEEEEecC----CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 041916 2 PYIYN--RDG--TELHCLKE--HGAV-LKLQFLRN----HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd--~~g--~~~~~l~~--h~~~-~~l~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 70 (359)
|.||. .+| ..++++.. |.+. ..++|+-+ ..+||.||.-|.|+|.|+.++++...+.+|...|+.+.|+|
T Consensus 66 vtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p 145 (385)
T KOG1034|consen 66 VTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHP 145 (385)
T ss_pred EEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCC
Confidence 45566 444 33444433 5555 78888764 35789999999999999999999999999999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----------
Q 041916 71 FN-GVVSLGHSGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE----------- 135 (359)
Q Consensus 71 ~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~----------- 135 (359)
+. ++++++|.|-+|++|++++..++..+- +|.+.|.++.|+++|.+|+++|.|.+|.+|++...+
T Consensus 146 ~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 146 DRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred CCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 76 789999999999999999999988764 899999999999999999999999999999996210
Q ss_pred --------------eeEec-------------------------cCCc--------------------------------
Q 041916 136 --------------VLQTL-------------------------PGHA-------------------------------- 144 (359)
Q Consensus 136 --------------~~~~~-------------------------~~~i-------------------------------- 144 (359)
++..| .+.|
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 00000 0000
Q ss_pred -----eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 145 -----KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 145 -----~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
...+|.|.+ ++.+...|.|.+||+....+...+-..|.. .+..|...+|+.|+.+|+...+|+++.-|.
T Consensus 306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~-~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK-SGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc-ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 011233434 445556799999999887665555555554 677899999999999999988888665554
No 142
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=9e-21 Score=180.27 Aligned_cols=200 Identities=19% Similarity=0.261 Sum_probs=160.7
Q ss_pred EEEeccCCCeEEEEEecCCCE----EEEEecCCeEEEEECCC---C---eEEEEEecCCCCeEEEEEcCCCC-EEEEEeC
Q 041916 12 LHCLKEHGAVLKLQFLRNHFL----LASINKFGQLRYQDVTM---G---EIVGNFRTGLGRTDVMRVNPFNG-VVSLGHS 80 (359)
Q Consensus 12 ~~~l~~h~~~~~l~~s~~~~~----l~s~~~dg~i~iwd~~~---~---~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~ 80 (359)
+..+.....-+.++|.+.+.. ||.|..||.|.+||... + ..+.+...|.++|..+.|++... +||+|+.
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 344444444589999997654 88899999999999875 2 24567778999999999999764 9999999
Q ss_pred CCeEEEEeCCCCcceEEE--eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCceeEEEcCC
Q 041916 81 GGTVTMWKPTTAAPLIKM--LCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQK 152 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~--~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~ 152 (359)
||.|.|||++..+...++ ....+.|.+++|+. ..+.|++++.+|.+.|||+|..+++..+. .++..++|+|+
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 999999999875543333 23467899999997 45678999999999999999998887772 34789999999
Q ss_pred c---eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEEEc
Q 041916 153 G---LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSILVP 215 (359)
Q Consensus 153 g---l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~~~ 215 (359)
+ +++++.| -.|.+||++....+...+.+|.. .|.++.|++.+ .+|++++.|+.+-.|.+
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~----GilslsWc~~D~~lllSsgkD~~ii~wN~ 283 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQR----GILSLSWCPQDPRLLLSSGKDNRIICWNP 283 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccCCchhhhccccc----ceeeeccCCCCchhhhcccCCCCeeEecC
Confidence 8 6666644 48999999988888899988876 79999999987 78888888886655533
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=3.7e-19 Score=154.05 Aligned_cols=193 Identities=17% Similarity=0.174 Sum_probs=161.4
Q ss_pred CCCeEEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcc
Q 041916 18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~ 94 (359)
|.+++++.|+|...+|++|+.|++++||-++. ...+.++.-...||.+.+|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 55669999999999999999999999999863 235677776778999999999998 899999999999999987753
Q ss_pred --eEEEeccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEc
Q 041916 95 --LIKMLCHQ-GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILG 167 (359)
Q Consensus 95 --~~~~~~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d 167 (359)
+..+.++. ..+....++|++++|+..|..|.|.+.-..++..+.++ ++.+..++|+.+| +++++.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 23333443 35678889999999999999999999999999998888 7899999999999 88888899999999
Q ss_pred CCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 168 DFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+... .++..+..... -.-+++|.++++.|||+|+..|++.|+.
T Consensus 373 l~~~-~~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 373 LRQN-SCLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred cCCc-ceEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEec
Confidence 8776 66666665532 1346678889999999999999888875
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.6e-19 Score=146.75 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=152.7
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEE-------------
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVM------------- 66 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~------------- 66 (359)
|-||| .+...-..|.+|..+ ++++||+||+.|+|+|.|..|.+||+..|.++..++- .++|+..
T Consensus 47 vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~ 125 (405)
T KOG1273|consen 47 VVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVAT 125 (405)
T ss_pred EEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEE
Confidence 67899 777888889999998 9999999999999999999999999999887766541 1222222
Q ss_pred ----------------------------------EEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccC-CCeEEEEEc
Q 041916 67 ----------------------------------RVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-GPVSALAFH 111 (359)
Q Consensus 67 ----------------------------------~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~~i~~~ 111 (359)
.|.+.|++|++|...|.+.++|..+.+++..+.-.. ..|..|.|+
T Consensus 126 ~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 126 IMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred EecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEe
Confidence 244457789999999999999999999888887555 778999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-------ce--eeEecc-----CCceeEEEcCCc-eEEEEc--CCcEEEEcCCCCCCc
Q 041916 112 PNGHLMATSGKECKIKIWDLRK-------YE--VLQTLP-----GHAKTLDFSQKG-LLAVGT--GSFVQILGDFSGSHN 174 (359)
Q Consensus 112 ~~~~~l~~~~~d~~i~iwd~~~-------~~--~~~~~~-----~~i~~~~~s~~g-l~~~~~--d~~i~i~d~~~~~~~ 174 (359)
..|..|+.-+.|+.|+.|+++. +. +.+.+. ..=.+++||.+| ++.+++ ...++||....| ..
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-sL 284 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-SL 284 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-ce
Confidence 9999999999999999999863 11 223332 234788999999 444443 468999995555 67
Q ss_pred cceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
+..+.+. .+....++.|+|-...+++
T Consensus 285 VKILhG~---kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 285 VKILHGT---KGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred eeeecCC---chhheeecccccceeeeee
Confidence 7766655 3457889999998766554
No 145
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.2e-19 Score=161.67 Aligned_cols=186 Identities=17% Similarity=0.243 Sum_probs=151.6
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec-
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC- 100 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~- 100 (359)
+-+.|+ ..+.||+|. ...|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+
T Consensus 181 nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred hHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC
Confidence 445677 345666665 45899999999987766666688999999999999999999999999999999999999988
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN 174 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~ 174 (359)
|...|.+++|+ +..+.+|+.|+.|..+|+|..+.... + ...|..+.|++++ +++++.|+.+.|||. ....+
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-~~~~p 335 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-LSPEP 335 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC-CCccc
Confidence 99999999998 67899999999999999998765444 3 4568999999999 777889999999996 44477
Q ss_pred cceeecccCCCCcceEEEEEeeCC-CEEEEEc--CCCeEEEEEcC
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGH--SMGWSSILVPG 216 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~--~dg~~~i~~~~ 216 (359)
...+..|.. .|.+++|+|-. .+||+|+ .|+.+++|.+.
T Consensus 336 ~~~~~~H~a----AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~ 376 (484)
T KOG0305|consen 336 KFTFTEHTA----AVKALAWCPWQSGLLATGGGSADRCIKFWNTN 376 (484)
T ss_pred cEEEeccce----eeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence 788888876 89999999965 4555543 34445554443
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=4.2e-18 Score=149.14 Aligned_cols=212 Identities=17% Similarity=0.247 Sum_probs=163.0
Q ss_pred CeEEEe-CCCcEE---EEeccCCC--eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916 1 YPYIYN-RDGTEL---HCLKEHGA--VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~~~---~~l~~h~~--~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
+++.|+ ..|... ..+..+.. +.|++|.++|. ++||..+|.|.||+..+.+.......|.+.|.+++.-.+|.+
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl 301 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL 301 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE
Confidence 478899 555443 34555544 49999999987 679999999999999888888777799999999999998866
Q ss_pred EEEEeCCCeEEEEeCCCC-----------cceE-----------------------------EEeccCCCeEEEEEcCCC
Q 041916 75 VSLGHSGGTVTMWKPTTA-----------APLI-----------------------------KMLCHQGPVSALAFHPNG 114 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~-----------~~~~-----------------------------~~~~h~~~v~~i~~~~~~ 114 (359)
|- |+.|..|..||-+-. -+++ ...+|.+....++.+|+.
T Consensus 302 lS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~ 380 (626)
T KOG2106|consen 302 LS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK 380 (626)
T ss_pred ee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh
Confidence 55 999999999982100 0011 123567778899999999
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeE--eccCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEE
Q 041916 115 HLMATSGKECKIKIWDLRKYEVLQ--TLPGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGK 191 (359)
Q Consensus 115 ~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~ 191 (359)
+.+++++.|+.+++|+ ..++.. .+..++.|+.|+|.| ++++...|...+.|..+. ..+. .|. .+.+++.
T Consensus 381 ~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~-~lv~---~~~--d~~~ls~ 452 (626)
T KOG2106|consen 381 NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ-DLVT---IHT--DNEQLSV 452 (626)
T ss_pred hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccc-eeEE---EEe--cCCceEE
Confidence 9999999999999999 344443 347889999999999 667778899999996553 2222 222 1348999
Q ss_pred EEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916 192 VSFRPYEDVLGIGHSMGWSSILVPGSGEPNF 222 (359)
Q Consensus 192 ~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~ 222 (359)
++|+|+|.+||+|+.|+.+.++....+...+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCcEE
Confidence 9999999999999999998887655444433
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=148.58 Aligned_cols=201 Identities=21% Similarity=0.255 Sum_probs=156.8
Q ss_pred eEEEe-CCCcEEEEecc--CC----CeEEEEEecCCCEEEEEecCCeEEEEEC-CCCeE--EEEEecC-----CCCeEEE
Q 041916 2 PYIYN-RDGTELHCLKE--HG----AVLKLQFLRNHFLLASINKFGQLRYQDV-TMGEI--VGNFRTG-----LGRTDVM 66 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~--h~----~~~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~--~~~~~~~-----~~~v~~~ 66 (359)
|.+|| -+|+....+++ |. ...+++|+|||.+|+.|. ...|++||+ +.|.. +.....+ .+-+.|+
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~ 213 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCF 213 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeee
Confidence 78999 89988777764 32 238999999999998765 669999999 45542 2222222 5678999
Q ss_pred EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCc-eeeEeccCC
Q 041916 67 RVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKY-EVLQTLPGH 143 (359)
Q Consensus 67 ~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~-~~~~~~~~~ 143 (359)
+|+|.. ..++.|+....+-||.-..+.++..+-+|.+.|+.+.|.++|+.|++|+. |..|-.||+|.. .++..+..+
T Consensus 214 a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh 293 (406)
T KOG2919|consen 214 AFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH 293 (406)
T ss_pred eccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence 999966 58999999999999988888899999999999999999999999999885 678999999974 456666433
Q ss_pred c----e--eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 144 A----K--TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 144 i----~--~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
+ . -+...|.| +++++.+|.|++||+..-...+..+..+.. .++.++++|--.++++++..
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd----~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD----TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc----cccceecCcccceeeeccCc
Confidence 3 2 34456778 455558999999998775566677777755 89999999997777776554
No 148
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=7.4e-19 Score=159.62 Aligned_cols=227 Identities=17% Similarity=0.240 Sum_probs=170.0
Q ss_pred CeEEEe-CCCcE---EEEeccCCCe-EEEEEecC-----------CCEEEEEecCCeEEEEECCCC---eEEEE------
Q 041916 1 YPYIYN-RDGTE---LHCLKEHGAV-LKLQFLRN-----------HFLLASINKFGQLRYQDVTMG---EIVGN------ 55 (359)
Q Consensus 1 ~v~iwd-~~g~~---~~~l~~h~~~-~~l~~s~~-----------~~~l~s~~~dg~i~iwd~~~~---~~~~~------ 55 (359)
.+|||| .+-.. .+.+--|... +++..-|. ..-+.||+.|++|++||+..+ ...+.
T Consensus 347 SlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 347 SLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred eEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 379999 43322 2334445544 66655441 124889999999999999752 11110
Q ss_pred ----------------------------EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE
Q 041916 56 ----------------------------FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA 107 (359)
Q Consensus 56 ----------------------------~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~ 107 (359)
.-...-.+.+++.+|+|++||+|..-|+++||++........+.+|...|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 0012335899999999999999999999999999998888899999999999
Q ss_pred EEEcC---CCCEEEEEeCCCeEEEEEcCC-ceeeEec-------------------------------------------
Q 041916 108 LAFHP---NGHLMATSGKECKIKIWDLRK-YEVLQTL------------------------------------------- 140 (359)
Q Consensus 108 i~~~~---~~~~l~~~~~d~~i~iwd~~~-~~~~~~~------------------------------------------- 140 (359)
+.|+. ..++||+++.|..|.+||+.. +.++.++
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~ 586 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRL 586 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCcee
Confidence 99985 456799999999999999842 1111111
Q ss_pred ---------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 141 ---------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 141 ---------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
...+..++..|.. +++++.|..|+|||+.++ +....+.+... +.+....+...|.|.||++...|..
T Consensus 587 f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~-~eG~lIKv~lDPSgiY~atScsdkt 664 (1080)
T KOG1408|consen 587 FPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-KQVKSFKGSRD-HEGDLIKVILDPSGIYLATSCSDKT 664 (1080)
T ss_pred ccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-ceeeeeccccc-CCCceEEEEECCCccEEEEeecCCc
Confidence 1124567777776 778899999999998777 66777776554 5557888999999999999999986
Q ss_pred EEE------------------------------EEcCCCCCccccccCCC
Q 041916 210 SSI------------------------------LVPGSGEPNFDSWVANP 229 (359)
Q Consensus 210 ~~i------------------------------~~~~~~d~~~~~~~~~~ 229 (359)
+.+ +++.++|+.|.+|.+..
T Consensus 665 l~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 665 LCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 555 57889999999999853
No 149
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.4e-19 Score=147.35 Aligned_cols=172 Identities=17% Similarity=0.281 Sum_probs=139.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCCeEEEE--EecCC-CCeEEEEEcCCCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGEIVGN--FRTGL-GRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~-~~v~~~~~sp~~~ 73 (359)
.|++|| .+|+.+..++++... +.+.|.. ....+.+|+.||+|++||+++...... +..+. .+..|++-+-.++
T Consensus 51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ 130 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN 130 (376)
T ss_pred eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC
Confidence 489999 889999999999987 9999987 457899999999999999998654443 33444 4667777776788
Q ss_pred EEEEEe----CCCeEEEEeCCCCcc-eEEE-eccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce----eeEec--
Q 041916 74 VVSLGH----SGGTVTMWKPTTAAP-LIKM-LCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYE----VLQTL-- 140 (359)
Q Consensus 74 ~l~sg~----~dg~v~lwd~~~~~~-~~~~-~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~----~~~~~-- 140 (359)
++++|. .|-.|.+||++..+. +..+ ..|.+.|+++.|+| +.++|++||.||.|.+||+.... ++..+
T Consensus 131 ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~ 210 (376)
T KOG1188|consen 131 IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINH 210 (376)
T ss_pred eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcc
Confidence 888875 567899999998765 5544 48999999999999 67899999999999999997642 23333
Q ss_pred cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCC
Q 041916 141 PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 141 ~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~ 172 (359)
...|.++.|+..+ +++.+......+|++..+.
T Consensus 211 ~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 211 GSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 4568999999988 7888889999999976653
No 150
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.3e-17 Score=137.73 Aligned_cols=211 Identities=10% Similarity=0.125 Sum_probs=147.5
Q ss_pred CeEEEe-CC--Cc--EEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECC---------CCeEEEEEecCCCCe
Q 041916 1 YPYIYN-RD--GT--ELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVT---------MGEIVGNFRTGLGRT 63 (359)
Q Consensus 1 ~v~iwd-~~--g~--~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~~~~~~v 63 (359)
+|.||| .. |. +-...+.|.+. ..+.|.+ .|+.+|+++.|+++.||.=. ......++....+.|
T Consensus 36 ~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 36 TVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSV 115 (361)
T ss_pred cEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcce
Confidence 578999 33 32 45567788887 9999966 58999999999999999852 122455667778899
Q ss_pred EEEEEcCC--CCEEEEEeCCCeEEEEeCCCCc------ceEEEe-------ccCCCeEEEEEcC---CCCEEEEEeCC--
Q 041916 64 DVMRVNPF--NGVVSLGHSGGTVTMWKPTTAA------PLIKML-------CHQGPVSALAFHP---NGHLMATSGKE-- 123 (359)
Q Consensus 64 ~~~~~sp~--~~~l~sg~~dg~v~lwd~~~~~------~~~~~~-------~h~~~v~~i~~~~---~~~~l~~~~~d-- 123 (359)
+.+.|.|. |-.||+++.||.|+||+....- ....++ .+..+..|+.|+| ...+||+|+.+
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 99999995 6789999999999999865432 222222 3566788999998 45678888765
Q ss_pred ---CeEEEEEcCCc----eeeEec---cCCceeEEEcCCc------eEEEEcCCcEEEEcCCCCC---------------
Q 041916 124 ---CKIKIWDLRKY----EVLQTL---PGHAKTLDFSQKG------LLAVGTGSFVQILGDFSGS--------------- 172 (359)
Q Consensus 124 ---~~i~iwd~~~~----~~~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i~d~~~~~--------------- 172 (359)
+.+.||..... ..+.++ +.+|++++|.|+- +++++.|| |+||.+....
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~ 274 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMT 274 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcc
Confidence 47888866442 233344 5689999999974 55667788 9999975311
Q ss_pred -CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 173 -HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 173 -~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
-.+..+..+.. |.+.|+.+.|+-.|..|++.+.||.+++|
T Consensus 275 ~l~v~~vs~~~~-H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 275 DLPVEKVSELDD-HNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred ccceEEeeeccC-CCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 01112222222 44499999999999776665555544444
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=2.6e-19 Score=160.61 Aligned_cols=158 Identities=18% Similarity=0.279 Sum_probs=131.5
Q ss_pred EEeccCCCeEEEEEec-CCCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 13 HCLKEHGAVLKLQFLR-NHFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 13 ~~l~~h~~~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
-.+.....++.+.|.| |...||+++.||.|++|.+..+ .+...+..|...|+++.|+|-. ..|++++.|-+
T Consensus 622 p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T 701 (1012)
T KOG1445|consen 622 PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST 701 (1012)
T ss_pred cccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce
Confidence 4444555569999999 5688999999999999999764 2456688899999999999954 68999999999
Q ss_pred EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEeccCCc----eeEEEcCCc--eEE
Q 041916 84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTLPGHA----KTLDFSQKG--LLA 156 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~i----~~~~~s~~g--l~~ 156 (359)
|.+||+.+++....+.+|.+.|.+++|+|||+.+|+.+.||+|++|..+.+. +++.-++++ ..+.|.-+| +++
T Consensus 702 i~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv 781 (1012)
T KOG1445|consen 702 IELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIV 781 (1012)
T ss_pred eeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEE
Confidence 9999999999999999999999999999999999999999999999999864 555555543 678888888 555
Q ss_pred EEcC----CcEEEEcCCC
Q 041916 157 VGTG----SFVQILGDFS 170 (359)
Q Consensus 157 ~~~d----~~i~i~d~~~ 170 (359)
.|.| ..|.+||..+
T Consensus 782 ~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 782 VGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ecccccchhhhhhhhhhh
Confidence 5544 5788888543
No 152
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-18 Score=154.55 Aligned_cols=193 Identities=15% Similarity=0.209 Sum_probs=154.2
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGT 83 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~ 83 (359)
.++..|.+. +.++|.|....|++|+.||+|.+|++.. -+++.+|++|.++|.|++..+++..+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 367778777 9999999999999999999999999932 2478899999999999999999999999999999
Q ss_pred EEEEeCCCC----------cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee----------------
Q 041916 84 VTMWKPTTA----------APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL---------------- 137 (359)
Q Consensus 84 v~lwd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---------------- 137 (359)
|+.|++... .....+.+|.+.|+.+++|+....|++|+.||++++|+.....++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 999965411 123457799999999999998889999999999999987543220
Q ss_pred ----------------------------Eec-----c-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccce
Q 041916 138 ----------------------------QTL-----P-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSR 177 (359)
Q Consensus 138 ----------------------------~~~-----~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~ 177 (359)
..+ + ..+.-+.++|.+ .+++..|+.|+++|..++ .++..
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-~~l~s 526 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-KILHS 526 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc-ccchh
Confidence 000 0 123456677777 666778899999997666 67777
Q ss_pred eecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 178 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
...|.. .++++++.|+|.+|++|+.|+.+
T Consensus 527 ~~a~~~----svtslai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 527 MVAHKD----SVTSLAIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred eeeccc----eecceeecCCCceEEeecCCcee
Confidence 777765 89999999999888876666533
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=1.2e-18 Score=150.83 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=159.9
Q ss_pred eEEEeCCC-----cEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCC
Q 041916 2 PYIYNRDG-----TELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 2 v~iwd~~g-----~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~ 72 (359)
|-+||-.+ .-+..+..|..+ .+|.|+|. ...+++.|.||+|++-|+..+.. +.+.......+..+.|+.+.
T Consensus 212 VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~ 291 (498)
T KOG4328|consen 212 VGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES 291 (498)
T ss_pred EEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC
Confidence 67898322 125677888887 99999995 47888999999999999987643 33333355567888898888
Q ss_pred CEEEEEeCCCeEEEEeCCCCcc-eEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCcee-----eEec--cCC
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAP-LIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEV-----LQTL--PGH 143 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~-~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~-----~~~~--~~~ 143 (359)
..++.|..=|...+||++++.. ...+.-|...|++|+++|. ..+|||+|.|++++|||+|.... +..+ ...
T Consensus 292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 8888888778999999998765 5566778889999999994 55699999999999999997432 3344 457
Q ss_pred ceeEEEcCCc--eEEEEcCCcEEEEcCC---CCCCccceeecccCCCCcc--eEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 144 AKTLDFSQKG--LLAVGTGSFVQILGDF---SGSHNYSRYMGHSMVKGYQ--IGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~~d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
|.+..|||+| +++.+.|+.|+|||.. .. -+......|...++.. .....|.|+..++++|..-.-+.++...
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~-~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~ 450 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK-DEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGN 450 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeeccccccc-CCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCC
Confidence 8999999998 9999999999999962 12 1222233343323333 3446899999888887777666666544
Q ss_pred CC
Q 041916 217 SG 218 (359)
Q Consensus 217 ~~ 218 (359)
++
T Consensus 451 ~~ 452 (498)
T KOG4328|consen 451 GG 452 (498)
T ss_pred CC
Confidence 33
No 154
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.80 E-value=2.9e-17 Score=143.89 Aligned_cols=206 Identities=14% Similarity=0.132 Sum_probs=161.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---------------------------
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--------------------------- 51 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------------------------- 51 (359)
.|.||+ .+.........|.+- .+++...+|.+|- |+.|..|..||-.-.+
T Consensus 268 ~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGT 346 (626)
T KOG2106|consen 268 NILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGT 346 (626)
T ss_pred eEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEee
Confidence 478999 444445555588775 9999999997655 9999999999932000
Q ss_pred -------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916 52 -------------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA 118 (359)
Q Consensus 52 -------------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 118 (359)
......+|......++.+|+..++++++.|+.+++|+ ..+++.+.. -..++.|+.|+|.| .+|
T Consensus 347 trN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va 422 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVA 422 (626)
T ss_pred ccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEE
Confidence 0011346777888999999999999999999999999 445554433 35678999999999 999
Q ss_pred EEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE
Q 041916 119 TSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF 194 (359)
Q Consensus 119 ~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 194 (359)
.|+..|...+.|..+...+... ..+++++.|+|+| +++++.|+.|+||-+..++..+..+..+ ++++|+.+.|
T Consensus 423 ~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~---~gs~ithLDw 499 (626)
T KOG2106|consen 423 VGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC---SGSPITHLDW 499 (626)
T ss_pred EeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee---cCceeEEeee
Confidence 9999999999999986655444 6789999999999 6667789999999987776777777666 4479999999
Q ss_pred eeCCCEEEEEcCCCeEEEEE
Q 041916 195 RPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 195 ~p~~~~l~~~~~dg~~~i~~ 214 (359)
++|+++|.+-+.|=.+-+|.
T Consensus 500 S~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 500 SSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred cCCCceEEeccCceEEEEEc
Confidence 99999998877776555553
No 155
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=9.4e-18 Score=155.25 Aligned_cols=210 Identities=18% Similarity=0.173 Sum_probs=154.3
Q ss_pred eEEEe--CCCcEEEEeccCCCeEEEEEecC-CCEEEEEecCCeEEEEECCCCeE--EE----EEecCCCCeEEEEEcCCC
Q 041916 2 PYIYN--RDGTELHCLKEHGAVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEI--VG----NFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 2 v~iwd--~~g~~~~~l~~h~~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~--~~----~~~~~~~~v~~~~~sp~~ 72 (359)
++||+ .....-..+.....++|+.|+|. ..+||.|..+|.|.+||+..+.. .. ....|..+|+.+.|..+.
T Consensus 224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~ 303 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE 303 (555)
T ss_pred EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence 68999 34566677777777899999995 57888889999999999987654 22 223588899999997654
Q ss_pred --CEEEEEeCCCeEEEEeCCCCc---------------------------------------------------------
Q 041916 73 --GVVSLGHSGGTVTMWKPTTAA--------------------------------------------------------- 93 (359)
Q Consensus 73 --~~l~sg~~dg~v~lwd~~~~~--------------------------------------------------------- 93 (359)
.-+++++.||.|..|+++.-.
T Consensus 304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~ 383 (555)
T KOG1587|consen 304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA 383 (555)
T ss_pred CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence 449999999999999863210
Q ss_pred ------ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceeeEec---cCCceeEEEcCCc---eEEEEcC
Q 041916 94 ------PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVLQTL---PGHAKTLDFSQKG---LLAVGTG 160 (359)
Q Consensus 94 ------~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~---~~~i~~~~~s~~g---l~~~~~d 160 (359)
....+..|.++|+++.++|=+..++..+.|.+|++|... ...++..+ ...+++++|||.. ++++..+
T Consensus 384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~ 463 (555)
T KOG1587|consen 384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGD 463 (555)
T ss_pred ccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCC
Confidence 011223467889999999976665555559999999988 66777777 3458999999988 5556678
Q ss_pred CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
|.|.+||+.... ..+...+.. .....+.+.|++.|+.|++|...|.+.++.
T Consensus 464 G~l~iWDLl~~~--~~Pv~s~~~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 464 GNLDIWDLLQDD--EEPVLSQKV-CSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred Cceehhhhhccc--cCCcccccc-cccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 999999986542 122222211 233678889999999999988888666655
No 156
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=1.8e-18 Score=152.49 Aligned_cols=190 Identities=16% Similarity=0.199 Sum_probs=149.6
Q ss_pred EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916 4 IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG 82 (359)
Q Consensus 4 iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg 82 (359)
|.+..|..-..+..|.+. .+-.|+|||.-|+|++.||.|++|. ++|....++.....+|.|++|.|+.+.++.+. .+
T Consensus 89 il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 89 ILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred EecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 334455556677889887 9999999999999999999999999 45765555656678999999999886555443 34
Q ss_pred eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEEc
Q 041916 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVGT 159 (359)
Q Consensus 83 ~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~~ 159 (359)
.+.+=.+.....+..+.+|.+-|.++.|+|.++++++||.|-..++||... .++..- ..+|++++|+|+.+++.++
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf~S~~~ey~ITSva~npd~~~~v~S 245 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLFTSAAEEYAITSVAFNPEKDYLLWS 245 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccccCChhccceeeeeeccccceeeee
Confidence 576766666667788899999999999999999999999999999999864 333332 5689999999999666665
Q ss_pred CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
-+++++=.+. .+.|..++|+|||..+++|+..|.+-+
T Consensus 246 ~nt~R~~~p~----------------~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 246 YNTARFSSPR----------------VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeecCCC----------------ccceEEEEEcCCCceeeccccCceEEE
Confidence 5666632221 227999999999999999999995433
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=9.1e-18 Score=143.42 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=106.6
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC--------C--------CeEEEEEecCCCCeEEEEEcCCCCE
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT--------M--------GEIVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
+..|..|... +++.|+|+|.+||||+.+|.|.+|-.. + ......+.+|...|..++|+|++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 4567788887 999999999999999999999999865 2 2244567789999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR 132 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~ 132 (359)
+++|+-|..+++||+..|.....+..|...|..++|.|-+.++++-+.|...+.+.+.
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999999999999999999999998888766666553
No 158
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.9e-17 Score=146.61 Aligned_cols=194 Identities=12% Similarity=0.121 Sum_probs=153.1
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE-EEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI-VGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
..+.+|+|+.+.+.||.+-.+|.|-||++..+=+ ...+.++ ...|.+++|++ +..|++.+.+|.|.-||+-++++..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeE
Confidence 3459999999999999999999999999987643 3344444 45799999995 4567788899999999999999999
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916 97 KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGSFVQILGDF 169 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~ 169 (359)
.+....+.|++++.+|.+..++.||.||.+..++...+...... ++.+.+++|+|++ +++|+.||.|++||..
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 99999999999999999999999999998888888777654433 5789999999999 7888899999999987
Q ss_pred CCCCccce---eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 170 SGSHNYSR---YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 170 ~~~~~~~~---~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+...... +.+-......-|+++.|-.++ .+++|.+.|.+.+|.
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWD 231 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEc
Confidence 76433311 111111022358888888654 678888888777754
No 159
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.79 E-value=5.8e-18 Score=146.61 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=154.3
Q ss_pred EEEeccCCCe-EEEEEecCC--CEEEEEecCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCe
Q 041916 12 LHCLKEHGAV-LKLQFLRNH--FLLASINKFGQLRYQDVTMGE----IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGT 83 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~ 83 (359)
...++-+.+. ++++|+|.. +++|+|+.-|.|-+||+.+.+ -+..+..|.++|.+|.|+|.+ ..+++.|.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 3445566776 999999975 588999999999999995322 355677899999999999965 68999999999
Q ss_pred EEEEeCCCCcc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eE---eccCCceeEEEcCCc---e
Q 041916 84 VTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQ---TLPGHAKTLDFSQKG---L 154 (359)
Q Consensus 84 v~lwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~---~~~~~i~~~~~s~~g---l 154 (359)
|++-|++.... +..+..-...+.++.|+.+...++.+..=|...+||+|+... .. .....|.+++++|.. +
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999987643 223322344567788888777777777777999999998653 22 224589999999987 8
Q ss_pred EEEEcCCcEEEEcCCCCCCcc---ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 155 LAVGTGSFVQILGDFSGSHNY---SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+++|.|++.+|||++.-.... .....|. -.|.++.|||.+..|++.+.|..+++|.+
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr----rsV~sAyFSPs~gtl~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLPHR----RSVNSAYFSPSGGTLLTTCQDNEIRVFDS 398 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceeccccc----ceeeeeEEcCCCCceEeeccCCceEEeec
Confidence 889999999999987642222 2233443 48999999999988999999988888876
No 160
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.79 E-value=2e-17 Score=153.29 Aligned_cols=202 Identities=14% Similarity=0.175 Sum_probs=140.0
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|+|||.+|.....+..|... .+++|||||+.|+.++.+ ..|++||+.+++. +..+.+ ....++|+|||+.|
T Consensus 186 i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~L 262 (429)
T PRK01742 186 VRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRL 262 (429)
T ss_pred EEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEE
Confidence 78899777767777787775 999999999999887653 4799999988753 333333 34578999999988
Q ss_pred EEEe-CCCeEEEE--eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCc-eeeEeccCCceeEEEc
Q 041916 76 SLGH-SGGTVTMW--KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKY-EVLQTLPGHAKTLDFS 150 (359)
Q Consensus 76 ~sg~-~dg~v~lw--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~~~~i~~~~~s 150 (359)
+.++ .+|.+.|| |+.++. +..+..+...+.+++|+|||+.|+.++ .++...+|++... .....+...-.+++|+
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~S 341 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQIS 341 (429)
T ss_pred EEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCC
Confidence 8764 67865555 665554 455666777788999999999877655 5678888876532 2222222111567899
Q ss_pred CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 151 QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 151 ~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
|+| +++++. ..+.+||+.++. .. .+... . ...++.|+|+|++|++++.+|...+|..
T Consensus 342 pDG~~ia~~~~-~~i~~~Dl~~g~-~~-~lt~~-~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 342 ADGKTLVMING-DNVVKQDLTSGS-TE-VLSST-F----LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred CCCCEEEEEcC-CCEEEEECCCCC-eE-EecCC-C----CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 999 444444 556779977663 22 22211 1 2456789999999999988887666553
No 161
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=5.1e-18 Score=152.39 Aligned_cols=211 Identities=11% Similarity=0.105 Sum_probs=155.3
Q ss_pred CeEEEe-CCCcEEEE--eccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe--------------------E---
Q 041916 1 YPYIYN-RDGTELHC--LKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE--------------------I--- 52 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~--l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~--------------------~--- 52 (359)
+++.|| .++.++.. +-+|.+. .+++|.|. ...|++|+.||.|.|||++-.. +
T Consensus 123 T~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp 202 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKP 202 (720)
T ss_pred eeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCch
Confidence 578999 77777655 8899987 99999996 4788999999999999986321 0
Q ss_pred ----EEEEecCCCCeEE---EEEcCCCCEEEEEeC-CCeEEEEeCCCCcceE--------EEecc---CCCeEEEEEcCC
Q 041916 53 ----VGNFRTGLGRTDV---MRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLI--------KMLCH---QGPVSALAFHPN 113 (359)
Q Consensus 53 ----~~~~~~~~~~v~~---~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~--------~~~~h---~~~v~~i~~~~~ 113 (359)
+.....+...|.+ +.+..|...||+++. |+.|+|||++...... .+..| .-.+.++..+..
T Consensus 203 ~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss 282 (720)
T KOG0321|consen 203 LKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS 282 (720)
T ss_pred hhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC
Confidence 0011123333433 445567788888877 9999999998654322 12223 235678888888
Q ss_pred CCEEEEEeCCCeEEEEEcCCc--eeeEeccCCc-----eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCC
Q 041916 114 GHLMATSGKECKIKIWDLRKY--EVLQTLPGHA-----KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV 184 (359)
Q Consensus 114 ~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~i-----~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 184 (359)
|.+|++.+.|+.|++||+++. .++..+.+.. ..-..+|++ +++++.|...++|.+.+.......+.+|..
T Consensus 283 Gt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~- 361 (720)
T KOG0321|consen 283 GTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTR- 361 (720)
T ss_pred CCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcce-
Confidence 999888888999999999874 3455553321 223458888 888889999999998888778888899877
Q ss_pred CCcceEEEEEeeCCC-EEEEEcCCCeEEEEEc
Q 041916 185 KGYQIGKVSFRPYED-VLGIGHSMGWSSILVP 215 (359)
Q Consensus 185 ~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~ 215 (359)
.|++++|.|... -+++++.|-.+.+|..
T Consensus 362 ---eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 362 ---EVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred ---EEEEEeeccccCCCceeeccCcceEEEec
Confidence 899999988643 3566688888888876
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.5e-19 Score=167.79 Aligned_cols=210 Identities=21% Similarity=0.251 Sum_probs=161.8
Q ss_pred eEEEe-CC---Cc---EEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcC
Q 041916 2 PYIYN-RD---GT---ELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd-~~---g~---~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp 70 (359)
|-+|| .. +. .+.++..|.+. ..+.|++.. ++||+|+.||.|.|||+..-+.-..+. ...+.|.+++|+.
T Consensus 92 I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNr 171 (1049)
T KOG0307|consen 92 IVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNR 171 (1049)
T ss_pred eEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccch
Confidence 56787 21 22 35667778886 999999974 699999999999999998654333331 2456799999987
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCC--CeEEEEEcCCCC-EEEEEeCCC---eEEEEEcCCc-eeeEec--
Q 041916 71 FN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG--PVSALAFHPNGH-LMATSGKEC---KIKIWDLRKY-EVLQTL-- 140 (359)
Q Consensus 71 ~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~-~l~~~~~d~---~i~iwd~~~~-~~~~~~-- 140 (359)
.- ..|++++.+|.+.|||++..+++..+..+.+ .+..++|+|+.. .|++++.|. .|.+||+|.. .+++++
T Consensus 172 kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~ 251 (1049)
T KOG0307|consen 172 KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG 251 (1049)
T ss_pred hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc
Confidence 54 6789999999999999999988888875554 478999999754 477776654 6999999974 456666
Q ss_pred -cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEEc
Q 041916 141 -PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILVP 215 (359)
Q Consensus 141 -~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~ 215 (359)
...|.++.|++.+ +++++.|+.|.+|+..++ +.+..+.... ..+..+.|+|... .+++++-+|.+.|+--
T Consensus 252 H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg-Evl~~~p~~~----nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 252 HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG-EVLGELPAQG----NWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred cccceeeeccCCCCchhhhcccCCCCeeEecCCCc-eEeeecCCCC----cceeeeeecCCCcchhhhheeccceeeeee
Confidence 4468999999977 888999999999998876 5666555543 3899999999876 7777788887777644
Q ss_pred C
Q 041916 216 G 216 (359)
Q Consensus 216 ~ 216 (359)
-
T Consensus 327 ~ 327 (1049)
T KOG0307|consen 327 Q 327 (1049)
T ss_pred e
Confidence 3
No 163
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.77 E-value=6.4e-16 Score=142.96 Aligned_cols=219 Identities=18% Similarity=0.145 Sum_probs=170.6
Q ss_pred eEEEeCCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCC-eE----EEEEecCCCCeEEEEEcCCC--C
Q 041916 2 PYIYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMG-EI----VGNFRTGLGRTDVMRVNPFN--G 73 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~----~~~~~~~~~~v~~~~~sp~~--~ 73 (359)
|++|-......+++..|.. +.-+ .|-|.+++++..++.|.||+..++ .. +...+.....|+++. +|.. +
T Consensus 97 i~~~~rgk~i~~~~~~~~a~v~~l--~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLN 173 (910)
T KOG1539|consen 97 IYAYARGKHIRHTTLLHGAKVHLL--LPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLN 173 (910)
T ss_pred EEEEEccceEEEEeccccceEEEE--eeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhhee
Confidence 3444433345566667762 3222 234788999999999999999874 22 111222223377665 6765 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEc
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFS 150 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s 150 (359)
.++.|+.+|.+.+|++++++.+.+++++.+.|+++.-+|-=..++.|..+|+|.+++++.++.+.+| .+.|++++|.
T Consensus 174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFr 253 (910)
T KOG1539|consen 174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFR 253 (910)
T ss_pred eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEec
Confidence 7899999999999999999999999999999999999998789999999999999999999999998 3789999999
Q ss_pred CCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 151 QKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 151 ~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
.|| +++++..|.+.+||+............|.+ .|+.+.|.|....+++++.|...++|+..++||.-++...
T Consensus 254 tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~----sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~ 329 (910)
T KOG1539|consen 254 TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYG----SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRS 329 (910)
T ss_pred cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccC----CcccceecCCCceEeeccCCCceeEEEeeCCCCcchheee
Confidence 999 445556699999998766333344445644 7999999999999999999999999998888887666544
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=1.3e-17 Score=136.72 Aligned_cols=197 Identities=18% Similarity=0.319 Sum_probs=148.2
Q ss_pred EEeccCCCe-EEEEEecC-CCEEEEEecC-------CeEEEEECCCC---------eEEEEEe-cCCCCeEEEEEcCCCC
Q 041916 13 HCLKEHGAV-LKLQFLRN-HFLLASINKF-------GQLRYQDVTMG---------EIVGNFR-TGLGRTDVMRVNPFNG 73 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~-~~~l~s~~~d-------g~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~sp~~~ 73 (359)
..|..|.+- ..++-+|. ..+|+|+..+ ..+.||.+... +++..+. .+.+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 345556654 99999994 5677776542 24679988532 2344444 4557899999999998
Q ss_pred EEEEEeCCCeEEEEeCCCCcc-eEEEe-----ccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEec-cCC-
Q 041916 74 VVSLGHSGGTVTMWKPTTAAP-LIKML-----CHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTL-PGH- 143 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~-~~~~~-----~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~- 143 (359)
.+++-. |..|.+|++..+.. +..+. .|....++-+|+| +|+.+++.+ |+++..||+|+.+....+ ..+
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhc
Confidence 888765 78899999987654 33332 3566788999999 788887765 789999999998877777 333
Q ss_pred --ceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEEc
Q 041916 144 --AKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILVP 215 (359)
Q Consensus 144 --i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~ 215 (359)
+..+.|+|+- +++||.||.|+|||.+....++..+.+|.. .|+++.|+|..+ ++++|++|..+.++..
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH----WvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH----WVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce----EEEEEEecCccceEEEecCCCceeEEEec
Confidence 8999999987 778889999999999888788888888876 999999999765 4556666665555443
No 165
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.2e-18 Score=144.52 Aligned_cols=188 Identities=15% Similarity=0.066 Sum_probs=142.7
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec-
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC- 100 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~- 100 (359)
.+++|+++|..|++|+.||++|||+..+...+.....|...|.++.|+|||..|++-+.| ..+||+++++.++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999987777777777888999999999999999999999 899999999977666542
Q ss_pred -cCCCeEEEEEcCCC---CE--EEEEeCCCeEEEEEcCCcee-----eEec---cCCceeEEEcCCc-e-EEEEcCCcEE
Q 041916 101 -HQGPVSALAFHPNG---HL--MATSGKECKIKIWDLRKYEV-----LQTL---PGHAKTLDFSQKG-L-LAVGTGSFVQ 164 (359)
Q Consensus 101 -h~~~v~~i~~~~~~---~~--l~~~~~d~~i~iwd~~~~~~-----~~~~---~~~i~~~~~s~~g-l-~~~~~d~~i~ 164 (359)
..-....+.|+.|+ .+ ++....-+.|+.||+..+.- ..+. ...|++++.|++| + +.++.+|.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 22235567777766 33 33334456788887765432 1111 3479999999999 4 4566799999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
|++..+.......-..|.. .|+.+.|+|+.+++++-+.+....++.
T Consensus 307 i~~~~~lq~~~~vk~aH~~----~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLG----FVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred EEEeceeeeeEeehhhhee----eeeeEEEcCCcCcccccccCCceeEEE
Confidence 9996655333334445544 899999999999999877776555543
No 166
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.76 E-value=1.2e-17 Score=151.26 Aligned_cols=185 Identities=15% Similarity=0.188 Sum_probs=143.6
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKF-----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVT 85 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~ 85 (359)
++.+-+|.-- ++++.+|+++++||++.. ..|++|+..+...+..+.+|.-.|+.|+|||||++|++.|.|.++.
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence 4556678775 999999999999998764 5789999999888889999999999999999999999999999999
Q ss_pred EEeCCCCc----ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEe-----ccCCceeEEEcCCc-
Q 041916 86 MWKPTTAA----PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQT-----LPGHAKTLDFSQKG- 153 (359)
Q Consensus 86 lwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~-----~~~~i~~~~~s~~g- 153 (359)
+|...... .......|..-|.+..|+|++.+++|+|.|.+|++|..... +.+.. +...++.++|.|--
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~ 677 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH 677 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence 99864321 12336689999999999999999999999999999998776 43333 25678999987732
Q ss_pred -----eEEEE-cCCcEEEEcCCCCCCc-------c-ceeecccCCCCcceEEEEEeeC
Q 041916 154 -----LLAVG-TGSFVQILGDFSGSHN-------Y-SRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 154 -----l~~~~-~d~~i~i~d~~~~~~~-------~-~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
++++| ..|.|.+|......+. . .....+. .+...|+.+.|.|.
T Consensus 678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATI-GPDSAVNRLLWRPT 734 (764)
T ss_pred ccccceEEEEecccEEEEEecccccccccceeeeecccccccc-ChHHhhheeEeccc
Confidence 56666 5699999984311110 0 1111121 24558999999986
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=144.40 Aligned_cols=203 Identities=16% Similarity=0.219 Sum_probs=155.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEE----------EEe------------
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG----------NFR------------ 57 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~------------ 57 (359)
++||| ++|..+.++++|.+. +|++|+.||..+|||+.|..|.+|+..-...+. +|.
T Consensus 35 lliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 35 LLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred EEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh
Confidence 68999 999999999999997 999999999999999999999999965321111 000
Q ss_pred -------------c--CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe---ccCCCeEEEEEcCCC-----
Q 041916 58 -------------T--GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML---CHQGPVSALAFHPNG----- 114 (359)
Q Consensus 58 -------------~--~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~~v~~i~~~~~~----- 114 (359)
. ....|.+++|..||++++.|..||+|.+-+- ++++...+. +..++|.+|+|+|..
T Consensus 115 dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 115 DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 0 1235678889999999999999999999863 455544454 467899999999943
Q ss_pred CEEEEEeCCCeEEEEEcCCceeeE---eccCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcce
Q 041916 115 HLMATSGKECKIKIWDLRKYEVLQ---TLPGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI 189 (359)
Q Consensus 115 ~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 189 (359)
..+++.....++.+|.+.. +.+. .+.-...|+++-|+| ++.+|.|+.+.+|. +.+ -.+.+.... +..|
T Consensus 194 di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~G-vrLGTvg~~----D~WI 266 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDG-VRLGTVGEQ----DSWI 266 (1081)
T ss_pred ceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecC-eEEeecccc----ceeE
Confidence 4677888888888887764 3322 234467899999999 78889999999996 444 333333332 3489
Q ss_pred EEEEEeeCCCEEEEEcCCCeEEE
Q 041916 190 GKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 190 ~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
++++..|++++++.|..||++--
T Consensus 267 WtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 267 WTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred EEEEEccCCceEEEEEccCeeeh
Confidence 99999999999999999996544
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=135.49 Aligned_cols=188 Identities=14% Similarity=0.198 Sum_probs=147.6
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeEEEEEec--CCC---CeEEEEEcCCCCEEEEEeCCCeEEEEeC-CCCcc--eEEEe
Q 041916 28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRT--GLG---RTDVMRVNPFNGVVSLGHSGGTVTMWKP-TTAAP--LIKML 99 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~---~v~~~~~sp~~~~l~sg~~dg~v~lwd~-~~~~~--~~~~~ 99 (359)
|+..++|+.+.+.-|.+||.-+|+...++.+ |.. ...+++|+|||.+|++| ....|++||+ +.|.- +....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 6778999999999999999999998888774 332 45789999999999876 5668999998 45432 22211
Q ss_pred -----ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEc-CCcEEEEc
Q 041916 100 -----CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGT-GSFVQILG 167 (359)
Q Consensus 100 -----~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~-d~~i~i~d 167 (359)
+..+-|.+++|+| +...++.++....+-||.-....++..+ .+.|+.++|.++| +++++. +..|.+||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 3367899999999 5668999999999999988888888877 5689999999999 777774 68999999
Q ss_pred CCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 168 DFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
++....++..+..|.......| -+...|++++|++|+.+|.+++|..-.
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCccEEEEecCC
Confidence 9988778888877754222222 245568899999988888888877544
No 169
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=6.2e-17 Score=132.81 Aligned_cols=195 Identities=17% Similarity=0.244 Sum_probs=147.0
Q ss_pred cCCCe-EEEEEecCC-----CEEEEEecCCeEEEEECCC--CeE--EEEE-----ecCCCCeEEEEEcC-CCCEEEEEeC
Q 041916 17 EHGAV-LKLQFLRNH-----FLLASINKFGQLRYQDVTM--GEI--VGNF-----RTGLGRTDVMRVNP-FNGVVSLGHS 80 (359)
Q Consensus 17 ~h~~~-~~l~~s~~~-----~~l~s~~~dg~i~iwd~~~--~~~--~~~~-----~~~~~~v~~~~~sp-~~~~l~sg~~ 80 (359)
.|.-+ +.+-|.|+. .+|||++ | .+++|.+.. ++. ...+ ..+..+++++.|+. +-++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 45555 999999975 4677654 3 799999974 221 1111 13557899999987 4589999999
Q ss_pred CCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec---c---CCceeEEEc
Q 041916 81 GGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL---P---GHAKTLDFS 150 (359)
Q Consensus 81 dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---~---~~i~~~~~s 150 (359)
|-+..|||+.++.. ...+-+|...|..|+|...+ ..||++|.||+|++||+|....-..+ + .+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 99999999998743 44567999999999999855 46899999999999999986543333 2 356889999
Q ss_pred CCc---eEEEEcC-CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcccccc
Q 041916 151 QKG---LLAVGTG-SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWV 226 (359)
Q Consensus 151 ~~g---l~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~ 226 (359)
+.. +++...| ..|.|.|++....++..+.+|.. .|+.++|.|... +.+.++++|...-+|+
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a----~VNgIaWaPhS~-----------~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA----SVNGIAWAPHSS-----------SHICTAGDDCQALIWD 316 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc----cccceEecCCCC-----------ceeeecCCcceEEEEe
Confidence 887 4555554 68999999888788888888876 999999999865 3344555666666676
Q ss_pred CC
Q 041916 227 AN 228 (359)
Q Consensus 227 ~~ 228 (359)
++
T Consensus 317 l~ 318 (364)
T KOG0290|consen 317 LQ 318 (364)
T ss_pred cc
Confidence 64
No 170
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=2.7e-16 Score=130.76 Aligned_cols=205 Identities=10% Similarity=0.102 Sum_probs=159.6
Q ss_pred eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 15 LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 15 l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
+..-..+ +|.+|++|+..+|++-.+..|.||..... +..+++..|...|++++|+|..+.|++++.|..-+||...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3333445 99999999999999999999999998754 4678899999999999999999999999999999999984
Q ss_pred CC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee------e-EeccCCceeEEEcCCc--eEEEE
Q 041916 91 TA---APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV------L-QTLPGHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 91 ~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~-~~~~~~i~~~~~s~~g--l~~~~ 158 (359)
.+ ++...+..+...+++|.|+|.++.||+||.-..|.+|-+....- + ..+...|++++|+|++ +.+++
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 33 46666778899999999999999999999999999998765321 1 1225678999999999 55677
Q ss_pred cCCcEEEEcCCC-----C--------CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 159 TGSFVQILGDFS-----G--------SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 159 ~d~~i~i~d~~~-----~--------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
.|+.++||...- . ..+...++..-...++.+..+.|+|+|..|+-.+.|+.+.+....+..
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 899999986321 0 001111111110145589999999999999999999988887765543
No 171
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.74 E-value=2.6e-17 Score=140.15 Aligned_cols=147 Identities=21% Similarity=0.398 Sum_probs=124.1
Q ss_pred EEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC-------cceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCe
Q 041916 55 NFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTA-------APLIKMLCHQGPVSALAFHPN-GHLMATSGKECK 125 (359)
Q Consensus 55 ~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~-------~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~ 125 (359)
.+.+|.++|..++|+|-+ ..||+||.|.+|.||.+..+ +++..+.+|...|.-++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 356899999999999955 78999999999999997643 467888999999999999994 567999999999
Q ss_pred EEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 126 IKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 126 i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
|.+||+.+++.+.++ +.-|.+++|+-+| +++++.|..|+|||.+++ ..+..-.+| .+..-..+.|-.+|.++
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~v~e~~~h---eG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TVVSEGVAH---EGAKPARAIFLASGKIF 231 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCC-cEeeecccc---cCCCcceeEEeccCcee
Confidence 999999999988777 5568999999999 788889999999998887 555555777 44567788899999865
Q ss_pred EEEc
Q 041916 202 GIGH 205 (359)
Q Consensus 202 ~~~~ 205 (359)
.+|-
T Consensus 232 tTGf 235 (472)
T KOG0303|consen 232 TTGF 235 (472)
T ss_pred eecc
Confidence 5543
No 172
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=144.02 Aligned_cols=203 Identities=19% Similarity=0.186 Sum_probs=153.2
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPF--NGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~--~~~l~sg~~dg~v~lwd 88 (359)
..|.+|.+. +|++|+.+|.+|++||.|-.+.|||.-..++++.+. +|...|.++.|-|. +.++++|..|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 567899998 999999999999999999999999999888888876 69999999999994 47899999999999999
Q ss_pred CCC----------CcceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceee-------Eec---c---CCc
Q 041916 89 PTT----------AAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVL-------QTL---P---GHA 144 (359)
Q Consensus 89 ~~~----------~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~-------~~~---~---~~i 144 (359)
+.. ..+...+.+|...|..|+..|++ +.+.+++.||+|+-||+|..... ..+ . -..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 984 23455677899999999999988 78999999999999999974211 111 1 134
Q ss_pred eeEEEcCCc---eEEEEcCCcEEEEcCCCCCC-----------------cccee-ecccCCCC-------cceEEEEEee
Q 041916 145 KTLDFSQKG---LLAVGTGSFVQILGDFSGSH-----------------NYSRY-MGHSMVKG-------YQIGKVSFRP 196 (359)
Q Consensus 145 ~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~-----------------~~~~~-~~~~~~~~-------~~v~~~~~~p 196 (359)
.++.++|.. +++++.|...++||.+...+ ++.-+ .+|-.... ..++-+.|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 789999988 66677889999999332100 01111 12211000 0156678999
Q ss_pred CCCEEEEEcCCCeEEEEEc
Q 041916 197 YEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 197 ~~~~l~~~~~dg~~~i~~~ 215 (359)
+|.-|++.-....+.++..
T Consensus 284 NGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 284 NGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred CCcEEEEeeCCeEEEEEee
Confidence 9988777666655555543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.74 E-value=3.2e-15 Score=137.24 Aligned_cols=209 Identities=25% Similarity=0.448 Sum_probs=164.1
Q ss_pred CeEEEe-CCCc-EEEEeccCC--CeEEEEE-ecCCC-EEEEEec-CCeEEEEECCC-CeEEEEEecCCCCeEEEEEcCCC
Q 041916 1 YPYIYN-RDGT-ELHCLKEHG--AVLKLQF-LRNHF-LLASINK-FGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 1 ~v~iwd-~~g~-~~~~l~~h~--~~~~l~~-s~~~~-~l~s~~~-dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~sp~~ 72 (359)
.+.+|+ ..+. .+..+..+. ....+.+ ++++. +++..+. |+.+.+||... ......+..|...|.+++|+|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 167 (466)
T COG2319 88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167 (466)
T ss_pred cEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC
Confidence 367899 4454 677777744 3455555 78777 5555444 99999999998 78888999999999999999999
Q ss_pred CEEEEEeC-CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeE-eccCCcee-E-
Q 041916 73 GVVSLGHS-GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQ-TLPGHAKT-L- 147 (359)
Q Consensus 73 ~~l~sg~~-dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~-~~~~~i~~-~- 147 (359)
..+++++. |+.+.+|++..+..+..+.+|...|.+++|+|++. .+++++.|+.|.+||...+..+. .+.++... +
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~ 247 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcceeE
Confidence 98888885 99999999998888888889999999999999998 55555899999999999777777 45433222 2
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.|+|++ +++++.++.+++|+..........+..| ...+.++.|.|++..+++++.|+.+.+|
T Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH----SSSVLSVAFSPDGKLLASGSSDGTVRLW 311 (466)
T ss_pred eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC----CccEEEEEECCCCCEEEEeeCCCcEEEE
Confidence 799998 5567889999999977654423333344 3489999999988888888877766666
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.74 E-value=3.9e-18 Score=157.38 Aligned_cols=200 Identities=18% Similarity=0.291 Sum_probs=160.9
Q ss_pred EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916 14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~ 92 (359)
.|.+|... .|..|...|.++++|++|..++||.+.++.++..+.+|.+.++.++.+.++.+++++|.|..|++|-+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 35578776 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--------------eee---------------------
Q 041916 93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--------------EVL--------------------- 137 (359)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--------------~~~--------------------- 137 (359)
.++..+.+|.+.|++|+|+|-. +.+.||++++||.+-. ..+
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 9999999999999999999954 7788999999998600 000
Q ss_pred --Ee------------c-------------------------------------cCCceeEEEcCCc---eEEEEcCCcE
Q 041916 138 --QT------------L-------------------------------------PGHAKTLDFSQKG---LLAVGTGSFV 163 (359)
Q Consensus 138 --~~------------~-------------------------------------~~~i~~~~~s~~g---l~~~~~d~~i 163 (359)
+. | ...+..+.++|-. .++++.||..
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 00 0 0012334455544 4567889999
Q ss_pred EEEcCCCCCCccceee-cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccc
Q 041916 164 QILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFD 223 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~ 223 (359)
.|||+..+ .++..+. +|. .+....|+++|..++....-|...|+-+|.++...+
T Consensus 421 ~iwdi~eg-~pik~y~~gh~-----kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 421 IIWDIWEG-IPIKHYFIGHG-----KLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK 475 (1113)
T ss_pred EeeecccC-Ccceeeecccc-----eeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence 99997666 4444443 332 688889999999999988889888887777665443
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=133.55 Aligned_cols=176 Identities=18% Similarity=0.277 Sum_probs=134.6
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCcceE--EEeccC-CCe
Q 041916 31 FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKPTTAAPLI--KMLCHQ-GPV 105 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~~~~~~~~--~~~~h~-~~v 105 (359)
..+|++-.+|+|++||..+|+.+..|+++...++.++|.. ....+.+|+.||+|++||+++..... .+..++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4588888899999999999999999999999999999977 45789999999999999999765433 344555 456
Q ss_pred EEEEEcCCCCEEEEEe----CCCeEEEEEcCCcee-eEec----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCC
Q 041916 106 SALAFHPNGHLMATSG----KECKIKIWDLRKYEV-LQTL----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSH 173 (359)
Q Consensus 106 ~~i~~~~~~~~l~~~~----~d~~i~iwd~~~~~~-~~~~----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~ 173 (359)
.+++.+-.++.+++|+ .|-.|.+||+|..+. +..+ ...|+++.|+|.. +++++.||.|.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 6777766778888876 367899999999765 6666 4579999999987 88899999999999654421
Q ss_pred ccceeecccCCCCcceEEEEEeeCC--CEEEEEcCCC
Q 041916 174 NYSRYMGHSMVKGYQIGKVSFRPYE--DVLGIGHSMG 208 (359)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~dg 208 (359)
. ..+ -|...+++.|.++.|...+ +++...+..+
T Consensus 201 e-DaL-~~viN~~sSI~~igw~~~~ykrI~clTH~Et 235 (376)
T KOG1188|consen 201 E-DAL-LHVINHGSSIHLIGWLSKKYKRIMCLTHMET 235 (376)
T ss_pred h-hhH-HHhhcccceeeeeeeecCCcceEEEEEccCc
Confidence 1 111 1111245589999999888 5554444443
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=4.4e-17 Score=139.25 Aligned_cols=189 Identities=17% Similarity=0.268 Sum_probs=141.2
Q ss_pred cCCCeEEEEEecCCC-EEEEEecCCeEEEEECCCCe---------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 17 EHGAVLKLQFLRNHF-LLASINKFGQLRYQDVTMGE---------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 17 ~h~~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
.|..+.++.|.++.. .|+||+.|..|++|-+..+. .+..+..|...|+++.|+|+|.+||+|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 555569999998765 99999999999999986432 34567789999999999999999999999999999
Q ss_pred EeCC--------C--------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916 87 WKPT--------T--------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL 147 (359)
Q Consensus 87 wd~~--------~--------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~ 147 (359)
|-.. + ......+.+|...|..++|+|++.++++++.|.++++||+..|.....+ ...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 1112345689999999999999999999999999999999999998888 3468999
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCCCCCCc--cc--e--------------eecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDFSGSHN--YS--R--------------YMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~--~~--~--------------~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
+|.|-+ +.+-+.|...+++++...... .. . -.-|...-..-...++|+|+|.+|++..
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999987 555666665555553221100 00 0 0111110112356689999999888743
No 177
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=4.4e-17 Score=144.89 Aligned_cols=188 Identities=18% Similarity=0.276 Sum_probs=148.4
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-- 99 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-- 99 (359)
..|+++.-..-|+.++....|+-+++..|..+..|....+.++++..++-..+|++|+.+|.|..||+++...+.++.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 445554333334445556689999999999999999888999999999999999999999999999999877666654
Q ss_pred ----ccCCC-----eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc---eEEEEcCCcE
Q 041916 100 ----CHQGP-----VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG---LLAVGTGSFV 163 (359)
Q Consensus 100 ----~h~~~-----v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g---l~~~~~d~~i 163 (359)
.|++. |+++.|+.+|-.+++|+.+|.|.|||+|+.+++..- .-+|..+.|.+.+ .++......+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ 296 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRIL 296 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHh
Confidence 34443 999999999999999999999999999999887655 4578999998874 4444555799
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+|||-.++ .....+.. ...++.+|+-|++.+++++..++-+..++.
T Consensus 297 kiWd~~~G-k~~asiEp-----t~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 297 KIWDECTG-KPMASIEP-----TSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred hhcccccC-Cceeeccc-----cCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 99997776 44433332 227999999999999999988876555543
No 178
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=5e-16 Score=127.58 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=144.8
Q ss_pred CCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC
Q 041916 18 HGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 18 h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~ 91 (359)
+..+ ++..|+. +.+++.++|-|.+..|||+.+|. ....+-.|...|..++|...+ ..+|+.+.||.|++||++.
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 3445 8889986 67899999999999999999873 356777899999999999866 6899999999999999998
Q ss_pred CcceEEEec---cCCCeEEEEEcC-CCCEEEEEeCC-CeEEEEEcCCc-eeeEec---cCCceeEEEcCCc---eEEEEc
Q 041916 92 AAPLIKMLC---HQGPVSALAFHP-NGHLMATSGKE-CKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG---LLAVGT 159 (359)
Q Consensus 92 ~~~~~~~~~---h~~~v~~i~~~~-~~~~l~~~~~d-~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g---l~~~~~ 159 (359)
...-..+.. ...+...++|++ |.++||+-..| ..|.+.|+|.. .++..+ .+.|+.++|.|.. ++++|.
T Consensus 229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 765444432 245678899998 67788887665 47999999974 456666 5689999999987 889999
Q ss_pred CCcEEEEcCCCCCC--ccceeecccCCCCcceEEEEEee-CCCEEEEEcCCC
Q 041916 160 GSFVQILGDFSGSH--NYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMG 208 (359)
Q Consensus 160 d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg 208 (359)
|....+||+..... ...++.... .++.|+.+.|+| ..++++++....
T Consensus 309 D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICFGKK 358 (364)
T ss_pred cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEecCe
Confidence 99999999865422 122222222 234799999995 467777765543
No 179
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.73 E-value=5.9e-15 Score=135.53 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=161.7
Q ss_pred CeEEEe-CC-CcEEEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 041916 1 YPYIYN-RD-GTELHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VV 75 (359)
Q Consensus 1 ~v~iwd-~~-g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 75 (359)
.+.+|+ .. +.....+..|... .+++|+|++.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred cEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 368899 44 5788889999886 99999999998888885 99999999999889999999999999999999998 56
Q ss_pred EEEeCCCeEEEEeCCCCcceE-EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eEec---cCCceeEEEc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLI-KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQTL---PGHAKTLDFS 150 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~---~~~i~~~~~s 150 (359)
++++.|+.|.+||...+..+. .+.+|...+ ...|+|++.++++++.|+.+++||++.... +..+ ...+.++.|+
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 293 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFS 293 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEEC
Confidence 666999999999988777777 678888875 448999998999999999999999987554 3333 4578999999
Q ss_pred CCc--eEEEEcCCcEEEEcCCCCCCccceee--cccCCCCcceEEEEEeeCCCEEEEE-cCCCeEEEEE
Q 041916 151 QKG--LLAVGTGSFVQILGDFSGSHNYSRYM--GHSMVKGYQIGKVSFRPYEDVLGIG-HSMGWSSILV 214 (359)
Q Consensus 151 ~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~l~~~-~~dg~~~i~~ 214 (359)
|++ +++++.|+.+.+|+.... ....... .|.. .+..+.|.+++..++.+ ..++.+.+|.
T Consensus 294 ~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 294 PDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEG----PVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCCCEEEEeeCCCcEEEEEcCCC-ceEEEeeecccCC----ceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 966 666777888999986555 3333332 4432 68889883332455444 4555444433
No 180
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2.3e-15 Score=139.30 Aligned_cols=200 Identities=10% Similarity=0.090 Sum_probs=136.2
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|++||.+|.....+..+... .+.+|||||+.|+..+. +..|.+||+.+|+... +....+.+..++|+|||..|+.
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~ 259 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAF 259 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEE
Confidence 67888667665666666655 99999999998886542 4579999998886432 2223344557899999998775
Q ss_pred E-eCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEec--cCCceeEEE
Q 041916 78 G-HSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTL--PGHAKTLDF 149 (359)
Q Consensus 78 g-~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~ 149 (359)
. +.+| .|.+||+.++... .+..+...+....|+|||+.|+.++.+ + .|.++|+.++...... ........|
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV 338 (429)
T ss_pred EEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence 4 4455 5889999887654 344445567889999999998877754 3 4556677766443222 334567999
Q ss_pred cCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 150 SQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 150 s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
+|+| ++.++.+ ..|.+||+.++. ...+... . ...+..|+|||++|+.++.++..
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~--~~~Lt~~-~----~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLTDT-F----LDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCC--eEEeCCC-C----CCCCceECCCCCEEEEEEcCCCc
Confidence 9999 4444432 368889976652 2222221 1 24467899999999998887643
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=9.5e-17 Score=133.82 Aligned_cols=167 Identities=17% Similarity=0.220 Sum_probs=133.4
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFR---TGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l 75 (359)
|+|.| .+++....+.+|... +.+.|.|+. ++|+++|.|.+|++||+++..++..|- +|.+.|.++.|+++|.+|
T Consensus 117 IrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i 196 (385)
T KOG1034|consen 117 IRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRI 196 (385)
T ss_pred EEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCee
Confidence 78888 888888999999997 999999974 899999999999999999999988775 699999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcc-------------------------eE---EEeccCCC-----------------------
Q 041916 76 SLGHSGGTVTMWKPTTAAP-------------------------LI---KMLCHQGP----------------------- 104 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~-------------------------~~---~~~~h~~~----------------------- 104 (359)
++++.|.++.+|+++..+. +. +-.-|..+
T Consensus 197 ~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w 276 (385)
T KOG1034|consen 197 ASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCW 276 (385)
T ss_pred eccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEE
Confidence 9999999999999862110 00 00112111
Q ss_pred -------------------------------eEE--EEEcCCCCEEEEEeCCCeEEEEEcCCceee--Eec-----cCCc
Q 041916 105 -------------------------------VSA--LAFHPNGHLMATSGKECKIKIWDLRKYEVL--QTL-----PGHA 144 (359)
Q Consensus 105 -------------------------------v~~--i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~-----~~~i 144 (359)
|+- .+|+|-+++||.|.+.|.|.+||++...+. .++ ...|
T Consensus 277 ~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tV 356 (385)
T KOG1034|consen 277 KPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTV 356 (385)
T ss_pred ecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccccee
Confidence 122 344566778999999999999999986652 122 3468
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGD 168 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~ 168 (359)
...+||.+| ++.++.|++|.-||.
T Consensus 357 RQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 357 RQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeeecccCcEEEEEeCCCcEEEEEe
Confidence 999999999 778889999999984
No 182
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=1.7e-15 Score=140.23 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=133.9
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS- 76 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~- 76 (359)
|++||.+|.....+..+... .+.+|+|||+.|+..+.+ ..|.+||+.+|+... +....+.+.+.+|+|||+.|+
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~ 256 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAV 256 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence 56777777766666666665 899999999988877642 469999999887543 333445667899999998776
Q ss_pred EEeCCCeEEEEe--CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEE--EcCCceeeE-ecc-CCceeEEE
Q 041916 77 LGHSGGTVTMWK--PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIW--DLRKYEVLQ-TLP-GHAKTLDF 149 (359)
Q Consensus 77 sg~~dg~v~lwd--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iw--d~~~~~~~~-~~~-~~i~~~~~ 149 (359)
+.+.+|...||. +..+. ...+..+.+.+.+..|+|||+.|+.++. ++...+| |+.++.... .+. ......+|
T Consensus 257 ~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 257 ALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred EEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 567788766665 44443 4555556666678899999999887664 4555555 444444322 222 23456899
Q ss_pred cCCc--eEEEEcCC---cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 150 SQKG--LLAVGTGS---FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 150 s~~g--l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
||+| ++.++.++ .|.+||+.++. . ..+... . ....+.|+|+|+.|+.++.++
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~-~-~~lt~~-~----~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQ-V-TALTDT-T----RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCC-e-EEccCC-C----CccCceECCCCCEEEEEEecC
Confidence 9999 44444332 69999976652 2 222222 1 346789999999988877655
No 183
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.6e-15 Score=139.57 Aligned_cols=197 Identities=13% Similarity=0.133 Sum_probs=140.2
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS- 76 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~- 76 (359)
|++||.+|.....+..|... .+.+|+|||+.|+..+. +..|.+||+.+|.. ..+..+.+.+...+|+|||..|+
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCEEEE
Confidence 67888777777777777765 99999999998887753 46899999988865 34555666778899999998765
Q ss_pred EEeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCceeeEec--cCCceeEEE
Q 041916 77 LGHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E--CKIKIWDLRKYEVLQTL--PGHAKTLDF 149 (359)
Q Consensus 77 sg~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~--~~~i~~~~~ 149 (359)
+.+.+|. |.+||+.++.. ..+..+.+.....+|+|||+.|+.++. + ..|++||+.++...... .+.+..+.|
T Consensus 263 ~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~ 341 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVW 341 (435)
T ss_pred EEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence 5555555 77788887654 445556666788999999999887764 3 36888898776543322 445677899
Q ss_pred cCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 150 SQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 150 s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
+|+| ++..+.+ ..|.+||+..+ . ...+ .... .+..+.|+|||+.|+..+.+
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~-~-~~~l-t~~~----~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGS-G-ERIL-TSGF----LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCC-c-eEec-cCCC----CCCCCeECCCCCEEEEEEcc
Confidence 9999 4444432 36888886443 2 2222 1211 46778999999988776553
No 184
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=2.4e-15 Score=139.68 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=136.6
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS- 76 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~- 76 (359)
|++||.+|.....+..+... .+.+|+|||+.|+.++. ...|.+||+.+++.. .+....+...+++|+|+|+.|+
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~ 264 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLAL 264 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEE
Confidence 67899777766667766665 89999999999888764 347999999887653 3333445556889999998765
Q ss_pred EEeCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceeeEe-cc-CCceeEEE
Q 041916 77 LGHSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-EC--KIKIWDLRKYEVLQT-LP-GHAKTLDF 149 (359)
Q Consensus 77 sg~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~-~~-~~i~~~~~ 149 (359)
+.+.+| .|++||+.++.. ..+..+......++|+|||++|+.++. ++ .|+++|+.++..... +. .....++|
T Consensus 265 ~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~ 343 (433)
T PRK04922 265 TLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASV 343 (433)
T ss_pred EEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence 445555 599999987764 445556556678999999999887764 34 477778777654332 22 34557899
Q ss_pred cCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 150 SQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 150 s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
||+| ++..+.+ ..|.+||+.++ ... .+. +.. ....+.|+|+|++|+..+.+
T Consensus 344 SpDG~~Ia~~~~~~~~~~I~v~d~~~g-~~~-~Lt-~~~----~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 344 SPDGKKIAMVHGSGGQYRIAVMDLSTG-SVR-TLT-PGS----LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCCCEEEEEECCCCceeEEEEECCCC-CeE-ECC-CCC----CCCCceECCCCCEEEEEEec
Confidence 9999 4333332 26999997665 222 222 211 34567899999988776654
No 185
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=3.9e-16 Score=129.71 Aligned_cols=165 Identities=13% Similarity=0.168 Sum_probs=133.6
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC---CCe-----EEEEEecCCCCeEEEEEcCC
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT---MGE-----IVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~---~~~-----~~~~~~~~~~~v~~~~~sp~ 71 (359)
.|.||+..|+.+..+...... +..+.||+|+++++++..-.|++|.+- .|. .+.++++|...|+.++||++
T Consensus 210 ~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~ 289 (420)
T KOG2096|consen 210 KICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS 289 (420)
T ss_pred cEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence 478999669999988877766 888999999999999999999999973 232 35678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCC-------cceEEE----e-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 72 NGVVSLGHSGGTVTMWKPTTA-------APLIKM----L-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~-------~~~~~~----~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
...+++.|.||++++||++-. ..+... . +...++ .++.+|.|..||.+.. ..+.+|..++++....
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~~~ 367 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSFG-SDLKVFASEDGKDYPE 367 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeecC-CceEEEEcccCccchh
Confidence 999999999999999997521 122221 1 112334 7999999999887654 5799999999877666
Q ss_pred c----cCCceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916 140 L----PGHAKTLDFSQKG-LLAVGTGSFVQILG 167 (359)
Q Consensus 140 ~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d 167 (359)
+ .+.|++++|+++| +++.+.|..++++.
T Consensus 368 ~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 368 LEDIHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred HHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 6 5679999999999 77777899999986
No 186
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=1.1e-15 Score=138.27 Aligned_cols=187 Identities=12% Similarity=0.122 Sum_probs=139.2
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA------ 93 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~------ 93 (359)
.+..++|-|||..|+.+. +..+.+||+..|..+.++++|...|.|++|+.||..+++|+.|..|.+|+..-..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 458899999998777765 4489999999999999999999999999999999999999999999999854211
Q ss_pred --ceEEEe---------------------------cc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916 94 --PLIKML---------------------------CH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-- 140 (359)
Q Consensus 94 --~~~~~~---------------------------~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 140 (359)
.++.+. .| ...|.+.+|..||.+++.|-.||+|.+-+-. +++...+
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~R 171 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIER 171 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeC
Confidence 111100 01 2346778888889999999999999887543 3332222
Q ss_pred ----cCCceeEEEcCCc-------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 141 ----PGHAKTLDFSQKG-------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 141 ----~~~i~~~~~s~~g-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
..+|.+++|+|.. +.++..+.++.+|.+ ++ ..+..-..- +....++.+.|+|.++..|+.|+.
T Consensus 172 pgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG-~~Igk~r~L----~FdP~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 172 PGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SG-KQIGKDRAL----NFDPCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cc-eeecccccC----CCCchhheeccCCcEEEEccCCCc
Confidence 3478999999864 555667888999975 33 222222222 125678999999999999999998
Q ss_pred EEEEE
Q 041916 210 SSILV 214 (359)
Q Consensus 210 ~~i~~ 214 (359)
.+++.
T Consensus 246 L~~fT 250 (1081)
T KOG1538|consen 246 LSLFT 250 (1081)
T ss_pred eEEEe
Confidence 77763
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=7e-16 Score=126.63 Aligned_cols=185 Identities=21% Similarity=0.247 Sum_probs=139.1
Q ss_pred CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE-EEEEe-----cCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeC
Q 041916 18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI-VGNFR-----TGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~-----~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~ 89 (359)
+..+.|+.|.|++..|++-. |..|.+|++..+.. +..+. .+....++-+|+| +++.+++. .|+++..||+
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~ 200 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDL 200 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEc
Confidence 44569999999999998876 78999999987765 33333 2445677889999 56676654 6789999999
Q ss_pred CCCcceEEEe-ccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCc-eeeEeccC---CceeEEEcCCc---eEEEEcC
Q 041916 90 TTAAPLIKML-CHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKY-EVLQTLPG---HAKTLDFSQKG---LLAVGTG 160 (359)
Q Consensus 90 ~~~~~~~~~~-~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~-~~~~~~~~---~i~~~~~s~~g---l~~~~~d 160 (359)
++......+. +|-..|+++.|+|+-. +|++|+.||.|++||+|+- .++.++++ .+.++.|+|.. ++++|+|
T Consensus 201 RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 201 RTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 9887776665 7888899999999755 4899999999999999974 57788754 47999999966 8889999
Q ss_pred CcEEEEcCCCCC----------------------------CccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCC
Q 041916 161 SFVQILGDFSGS----------------------------HNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMG 208 (359)
Q Consensus 161 ~~i~i~d~~~~~----------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg 208 (359)
..|.+|....-. ..+..|..|.. .|++++|+.-..++ ++-+.||
T Consensus 281 s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED----SVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 281 SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED----SVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc----ceEEEeeccCCCeeEEEeccCc
Confidence 999998643210 12234445543 89999999877754 3333444
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=2.2e-16 Score=142.00 Aligned_cols=179 Identities=15% Similarity=0.242 Sum_probs=138.8
Q ss_pred EecCCCEEEE--EecCCeEEEEECCCC-eE----EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC-----
Q 041916 26 FLRNHFLLAS--INKFGQLRYQDVTMG-EI----VGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTA----- 92 (359)
Q Consensus 26 ~s~~~~~l~s--~~~dg~i~iwd~~~~-~~----~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~----- 92 (359)
|+.+...+|+ ++..|.|-||+++.. +. +-.+. ....|+.+.|.| |...|++++.||.|.+|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4444444443 455789999999753 21 22222 235799999999 5578999999999999997643
Q ss_pred --cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEE
Q 041916 93 --APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQ 164 (359)
Q Consensus 93 --~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~ 164 (359)
.+...+.+|...|+++.|+| -...|++++.|-+|++||+++++....+ .+.|.+++|||+| +++++.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 45667789999999999999 5678999999999999999998776666 5679999999999 88899999999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+|..+....++..-.+. -+..-..+.|.-+|+++++.+.|.
T Consensus 746 Vy~Prs~e~pv~Eg~gp---vgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGP---VGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred EeCCCCCCCccccCCCC---ccCcceeEEEEecCcEEEEecccc
Confidence 99988776655544333 233556788999999998887775
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=3.3e-15 Score=126.55 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=126.8
Q ss_pred EEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC---CCCeEEEEEcCCCCEEEEE
Q 041916 3 YIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG---LGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~sg 78 (359)
++++ ..+..++.+.-...+.++.++. +.|+++-.+ .|+|||+.+.+.++++..- ...+.++.+++.+.+++.-
T Consensus 71 kv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp 147 (391)
T KOG2110|consen 71 KVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP 147 (391)
T ss_pred EEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEec
Confidence 4455 4455555555555556666643 456666544 5999999999999888754 2335555555556687763
Q ss_pred --eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceeeEecc-----CCceeEEEc
Q 041916 79 --HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK-IKIWDLRKYEVLQTLP-----GHAKTLDFS 150 (359)
Q Consensus 79 --~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~-----~~i~~~~~s 150 (359)
...|.|.|||+.+-+++..+.+|.+++-+++|+++|.+|||+|..|+ |++|.+.+|+.+.+|. ..|.+++|+
T Consensus 148 ~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 148 GSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 35689999999999999999999999999999999999999999886 7999999999999992 357999999
Q ss_pred CCc-eEEE-EcCCcEEEEcCCC
Q 041916 151 QKG-LLAV-GTGSFVQILGDFS 170 (359)
Q Consensus 151 ~~g-l~~~-~~d~~i~i~d~~~ 170 (359)
|++ ++++ +..++|++|.+..
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CCCCeEEEecCCCeEEEEEecc
Confidence 999 5555 4568999998654
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=2.1e-15 Score=127.70 Aligned_cols=134 Identities=18% Similarity=0.249 Sum_probs=113.9
Q ss_pred CeEEEe-CCCcEEEEeccC-CCe-EEEEEec--CCCEEEEEe--cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RDGTELHCLKEH-GAV-LKLQFLR--NHFLLASIN--KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h-~~~-~~l~~s~--~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
.||||| ++.+.++++..- ..+ --++++| .+.+||.-+ ..|.|.+||+.+-+.+..+..|.+++.+++|+|+|.
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~ 186 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT 186 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCC
Confidence 389999 999999998865 333 3445554 556887643 368999999999999999999999999999999999
Q ss_pred EEEEEeCCCe-EEEEeCCCCcceEEEecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 74 VVSLGHSGGT-VTMWKPTTAAPLIKMLCH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 74 ~l~sg~~dg~-v~lwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
+||++|..|+ |+|+.+.+|+.+..|+.. ...|.+++|+|++.+|++.|..++|.+|-+...
T Consensus 187 llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999999998 789999999999888732 346889999999999999999999999998753
No 191
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=5.5e-16 Score=137.00 Aligned_cols=203 Identities=19% Similarity=0.285 Sum_probs=146.5
Q ss_pred eEEEEEe-----cCCCEEEEEecCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 041916 21 VLKLQFL-----RNHFLLASINKFGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 21 ~~~l~~s-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~ 90 (359)
++|-+|+ |.+--|..|-..|.|.+.|....+....+. .....|+|+.|-|.+ ..++++..+|.+++||..
T Consensus 171 P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 171 PTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred CceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 4555663 345567778888999999976532222121 133689999999955 677788899999999742
Q ss_pred C----------------------------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916 91 T----------------------------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-- 140 (359)
Q Consensus 91 ~----------------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 140 (359)
- ..|+..+.-..+.|+.++|+|||.+||+.+.||.++|||..+.+++..+
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS 330 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS 330 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh
Confidence 1 1223333334567899999999999999999999999999987765544
Q ss_pred -cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE----------------
Q 041916 141 -PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL---------------- 201 (359)
Q Consensus 141 -~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l---------------- 201 (359)
-+...|++||||| ++++|.|.-|.||.+... +.+..-.+|. ++|..|+|.|.-...
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er-RVVARGqGHk----SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~ 405 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER-RVVARGQGHK----SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDV 405 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccc-eEEEeccccc----cceeeEeecccccccccccccccccccccch
Confidence 5778999999999 778889999999996554 5555555554 499999999622111
Q ss_pred ---------EEEcCCC-----------eEEEEEcCCCCCccccccCC
Q 041916 202 ---------GIGHSMG-----------WSSILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 202 ---------~~~~~dg-----------~~~i~~~~~~d~~~~~~~~~ 228 (359)
.+++.++ ...-|-+.+.|..+.+||+.
T Consensus 406 ~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 406 AHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred hcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 0233333 55567888899999999985
No 192
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=99.70 E-value=3.8e-17 Score=107.29 Aligned_cols=79 Identities=66% Similarity=1.119 Sum_probs=73.4
Q ss_pred eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCccChhhhchhhhhhhhhcCCCCceeeCC
Q 041916 178 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNP 257 (359)
Q Consensus 178 ~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~~ 257 (359)
|..|.. .+..|.++.|+|..++|.+|+..|+.+++++|+++.+++.++.|||++.+|+++.+|+.+|+|++|++|++||
T Consensus 2 Ym~h~~-~~~~v~~~~F~PfEDvLgvGh~~G~sSiiVPGsGe~NfDs~e~NP~et~kqRrE~EV~~LLeKippd~I~LdP 80 (80)
T PF08149_consen 2 YMTHLK-PGSPVESLRFCPFEDVLGVGHSKGFSSIIVPGSGEPNFDSLEANPFETKKQRREREVRSLLEKIPPDMITLDP 80 (80)
T ss_pred CccccC-CCCeeeeeEEechHHeeEeeccCceeEEeccCCCCCCCCcccCCcccchhHHhHHHHHHHHHhCCccceecCc
Confidence 344533 5668999999999999999999999999999999999999999999999999999999999999999999986
No 193
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=3e-15 Score=136.04 Aligned_cols=211 Identities=12% Similarity=0.104 Sum_probs=156.9
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCC---EEEEEecCCeEEEEECCCCe-------------------------
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHF---LLASINKFGQLRYQDVTMGE------------------------- 51 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~---~l~s~~~dg~i~iwd~~~~~------------------------- 51 (359)
|.+|| ..-..+.++.+|... +|+.|.|+.. ++++|+.|+.|.+|.++...
T Consensus 36 Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~ 115 (764)
T KOG1063|consen 36 IAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMT 115 (764)
T ss_pred EEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEE
Confidence 67888 444567889999987 9999998766 78999999888888765110
Q ss_pred -------------------------------------------------------------------EEEEEecCCCCeE
Q 041916 52 -------------------------------------------------------------------IVGNFRTGLGRTD 64 (359)
Q Consensus 52 -------------------------------------------------------------------~~~~~~~~~~~v~ 64 (359)
.+..+.+|.+.|.
T Consensus 116 ~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIr 195 (764)
T KOG1063|consen 116 CKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIR 195 (764)
T ss_pred eeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhh
Confidence 0111457888888
Q ss_pred EEEEcCCC---CEEEEEeCCCeEEEEeCCCCc---------------------ceEE----------EeccCCCeEEEEE
Q 041916 65 VMRVNPFN---GVVSLGHSGGTVTMWKPTTAA---------------------PLIK----------MLCHQGPVSALAF 110 (359)
Q Consensus 65 ~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~---------------------~~~~----------~~~h~~~v~~i~~ 110 (359)
+++|...+ .+|+++|.|..|+||.+.-+. .... +.+|.+.|.++.|
T Consensus 196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W 275 (764)
T KOG1063|consen 196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW 275 (764)
T ss_pred hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence 88887644 489999999999999753211 1111 2389999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCc--eeeEe--c---c---CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC--Cccc
Q 041916 111 HPNGHLMATSGKECKIKIWDLRKY--EVLQT--L---P---GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS--HNYS 176 (359)
Q Consensus 111 ~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~--~---~---~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~--~~~~ 176 (359)
+|.+..|++++.|.++.+|..... --+.. + . +......|+|++ +++-+..|..++|...... ....
T Consensus 276 ~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~ 355 (764)
T KOG1063|consen 276 HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEP 355 (764)
T ss_pred ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecc
Confidence 999999999999999999977653 22222 2 2 235788899999 7777888999999832221 1223
Q ss_pred eeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 177 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
.+.+|.. .|.+++|+|.|.+|++.+.|.+.++|...
T Consensus 356 ~iSGH~~----~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 356 VISGHVD----GVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred ccccccc----cceeeeecCCCCEEEEeccccceeeeccc
Confidence 3445654 89999999999999999999988887766
No 194
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=7.1e-15 Score=118.02 Aligned_cols=177 Identities=12% Similarity=0.121 Sum_probs=133.2
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE------EEEEe--c-----CCCCeEEEEEcCCCCEEE
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI------VGNFR--T-----GLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~--~-----~~~~v~~~~~sp~~~~l~ 76 (359)
.+...++|.++ +.++|. ..+|++|+ ||.|+=|....... +.... . .-..|++|...|..+-++
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~ 130 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSIL 130 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEE
Confidence 35566899998 999998 34677776 59999998753211 11111 1 223588999999887777
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------------CC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------------GH 143 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------------~~ 143 (359)
.++.|+.++-||+.+|+....+.+|.+.|.+++--.....+++|+.||++++||+++++++..+. ..
T Consensus 131 ~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~w 210 (325)
T KOG0649|consen 131 FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKW 210 (325)
T ss_pred EecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCce
Confidence 77799999999999999999999999999999986666679999999999999999999888771 12
Q ss_pred ceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 144 AKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 144 i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
|.+++.+.+ .++||.+..+.+|.++.. .+...+.-.. ++..+.|..+
T Consensus 211 igala~~ed-WlvCGgGp~lslwhLrss-e~t~vfpipa-----~v~~v~F~~d 257 (325)
T KOG0649|consen 211 IGALAVNED-WLVCGGGPKLSLWHLRSS-ESTCVFPIPA-----RVHLVDFVDD 257 (325)
T ss_pred eEEEeccCc-eEEecCCCceeEEeccCC-CceEEEeccc-----ceeEeeeecc
Confidence 445554444 778888899999998776 4544444321 5777888754
No 195
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.1e-15 Score=125.14 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=138.8
Q ss_pred CeEEEeCCCcEEEEeccC--CCeEEEEEecCC-CEEEEEecCCeEEEEECCCC-e-------------EEEEEecCCCCe
Q 041916 1 YPYIYNRDGTELHCLKEH--GAVLKLQFLRNH-FLLASINKFGQLRYQDVTMG-E-------------IVGNFRTGLGRT 63 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h--~~~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-~-------------~~~~~~~~~~~v 63 (359)
.|+|||...++...++.. ..++|++|-|.+ .-|+.|... -|++|..+.. . .+....+| .+|
T Consensus 121 vVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pV 198 (445)
T KOG2139|consen 121 VVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPV 198 (445)
T ss_pred EEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-cee
Confidence 478999555776667654 346999999975 556666654 6999987531 1 11222344 689
Q ss_pred EEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceeeEec-
Q 041916 64 DVMRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVLQTL- 140 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~- 140 (359)
++|+|++||..+++++. |..|.|||+.++..+.......+.++-+.|||||.+|+.++-|+..++|+.. ++....-.
T Consensus 199 tsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l 278 (445)
T KOG2139|consen 199 TSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL 278 (445)
T ss_pred eEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec
Confidence 99999999999998874 6779999999987655444456778899999999999999999999999554 44433322
Q ss_pred -cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCcc--------------------ceeecccCCCCcceEEEEEee
Q 041916 141 -PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNY--------------------SRYMGHSMVKGYQIGKVSFRP 196 (359)
Q Consensus 141 -~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~--------------------~~~~~~~~~~~~~v~~~~~~p 196 (359)
.+.|...+|+|.| +++++... .+|.+....+.. ....+... ..+.+.+++|.|
T Consensus 279 gsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l-~cgeaq~lawDp 355 (445)
T KOG2139|consen 279 GSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL-CCGEAQCLAWDP 355 (445)
T ss_pred cCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCccc-ccCccceeeECC
Confidence 6789999999999 44444333 334322211110 01111111 245789999999
Q ss_pred CCCEEEEEcCCC
Q 041916 197 YEDVLGIGHSMG 208 (359)
Q Consensus 197 ~~~~l~~~~~dg 208 (359)
.|.+|++.-..+
T Consensus 356 sGeyLav~fKg~ 367 (445)
T KOG2139|consen 356 SGEYLAVIFKGQ 367 (445)
T ss_pred CCCEEEEEEcCC
Confidence 999998854443
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.7e-15 Score=118.15 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=121.3
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
+++|...|..+-+++++.|+.++-||+.+|+..+.+++|.+.|+++.--..+..+++|+.||++++||+++++.+..+..
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence 48999999877777777899999999999999999999999999999856667889999999999999999998877653
Q ss_pred c---------CC-CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcC
Q 041916 101 H---------QG-PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGD 168 (359)
Q Consensus 101 h---------~~-~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~ 168 (359)
. .+ .|.+++.+ ..+|++|+ ...+.+|.++..++...| ++++..+.|..+.++++|..+.+.-|.+
T Consensus 197 yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 197 YKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVDDCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEecccceeEeeeecceEEEeccccceeeeee
Confidence 2 22 35566554 44777655 467999999998877776 7899999999998999998999999974
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=1.3e-13 Score=123.68 Aligned_cols=213 Identities=11% Similarity=0.053 Sum_probs=138.6
Q ss_pred CeEEEe-C-CCc--EEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECC-CCeE--EEEEecCCCCeEEEEEcCCC
Q 041916 1 YPYIYN-R-DGT--ELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVT-MGEI--VGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 1 ~v~iwd-~-~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~~~~~~~~~v~~~~~sp~~ 72 (359)
.|++|+ . +|. .+..+.....+..++++|++++|++++ .++.|.+|++. ++.. +.... ..+.+..++|+|++
T Consensus 13 ~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g 91 (330)
T PRK11028 13 QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQG 91 (330)
T ss_pred CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCC
Confidence 478899 4 354 456665545568899999999887664 57899999997 3432 22222 23456789999999
Q ss_pred CEEEEEe-CCCeEEEEeCCCC-c---ceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeE-------e
Q 041916 73 GVVSLGH-SGGTVTMWKPTTA-A---PLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQ-------T 139 (359)
Q Consensus 73 ~~l~sg~-~dg~v~lwd~~~~-~---~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-------~ 139 (359)
++|++++ .++.|.+|++.+. . .+..+. +.....+++++|+|+++++++ .++.|.+||+.+...+. .
T Consensus 92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~ 170 (330)
T PRK11028 92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT 170 (330)
T ss_pred CEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee
Confidence 9888776 4889999998742 2 222222 223457789999999986655 56899999998632221 1
Q ss_pred c--cCCceeEEEcCCc--eEEEEc-CCcEEEEcCCCCCCc---cceeecccC--CCCcceEEEEEeeCCCEEEEEcC-CC
Q 041916 140 L--PGHAKTLDFSQKG--LLAVGT-GSFVQILGDFSGSHN---YSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHS-MG 208 (359)
Q Consensus 140 ~--~~~i~~~~~s~~g--l~~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~-dg 208 (359)
. ...+..++|+|+| ++++.. ++.|.+|++...... ...+...+. ........+.|+|++++|+++.. ++
T Consensus 171 ~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 171 TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 1 2346789999999 445554 799999997632111 222221110 01112346889999998888743 45
Q ss_pred eEEEEEc
Q 041916 209 WSSILVP 215 (359)
Q Consensus 209 ~~~i~~~ 215 (359)
.+.+|..
T Consensus 251 ~I~v~~i 257 (330)
T PRK11028 251 LISVFSV 257 (330)
T ss_pred eEEEEEE
Confidence 5555543
No 198
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=6.7e-14 Score=125.63 Aligned_cols=210 Identities=16% Similarity=0.202 Sum_probs=135.9
Q ss_pred eEEEe-C-CCcE--EEEeccCCCeEEEEEecCCCEEEEEec-CCeEEEEECCC-Ce---EEEEEecCCCCeEEEEEcCCC
Q 041916 2 PYIYN-R-DGTE--LHCLKEHGAVLKLQFLRNHFLLASINK-FGQLRYQDVTM-GE---IVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 2 v~iwd-~-~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~sp~~ 72 (359)
|.+|+ . +|.. +........+..++|+|++++|++++. ++.|.+|++.+ +. .+..+. +...+.+++++|++
T Consensus 59 i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g 137 (330)
T PRK11028 59 VLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDN 137 (330)
T ss_pred EEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCC
Confidence 56677 3 4432 233332234588999999998887764 88999999974 32 233332 23456789999999
Q ss_pred CEEEEE-eCCCeEEEEeCCCCcceE-------EEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC--c--eeeEe
Q 041916 73 GVVSLG-HSGGTVTMWKPTTAAPLI-------KMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRK--Y--EVLQT 139 (359)
Q Consensus 73 ~~l~sg-~~dg~v~lwd~~~~~~~~-------~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~--~--~~~~~ 139 (359)
++++++ ..++.|.+||+.+...+. ..... .....++|+|+|+++++++. +++|.+||+.. + +.+..
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~ 216 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQT 216 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEE
Confidence 887554 466999999997632221 11122 23578999999999988876 89999999973 2 23333
Q ss_pred c---cC------CceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC-
Q 041916 140 L---PG------HAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS- 206 (359)
Q Consensus 140 ~---~~------~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~- 206 (359)
+ +. ....+.++|+| ++++. .++.|.+|++....... .+..+.. .+.....++|+|+|++|+++..
T Consensus 217 ~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~-~~~~~~~-~~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 217 LDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVL-SFEGHQP-TETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred EecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeE-EEeEEEe-ccccCCceEECCCCCEEEEEEcc
Confidence 3 11 12468899999 45543 46899999975543222 2222211 1224567899999998887664
Q ss_pred CCeEEEEEc
Q 041916 207 MGWSSILVP 215 (359)
Q Consensus 207 dg~~~i~~~ 215 (359)
++.+.+|..
T Consensus 295 ~~~v~v~~~ 303 (330)
T PRK11028 295 SHHISVYEI 303 (330)
T ss_pred CCcEEEEEE
Confidence 555555543
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=1.8e-14 Score=118.17 Aligned_cols=144 Identities=16% Similarity=0.278 Sum_probs=106.2
Q ss_pred EEEEEecCCCEEEEEec----------CCeEEEEECCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEE--eCCCeEEEE
Q 041916 22 LKLQFLRNHFLLASINK----------FGQLRYQDVTM-GEIVGNFRT-GLGRTDVMRVNPFNGVVSLG--HSGGTVTMW 87 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~-~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg--~~dg~v~lw 87 (359)
..+.|+|+|.+|+.-.. -|...+|.++. +..+..+.. ..++|.+++|+|+|..|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 67889999977665332 13345555522 234444443 34579999999999886554 467799999
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceeeEecc-CCceeEEEcCCc--eEEEE---
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKYEVLQTLP-GHAKTLDFSQKG--LLAVG--- 158 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~-~~i~~~~~s~~g--l~~~~--- 158 (359)
|++ ++++..+ +...++.|.|+|+|++|++++. .|.|.+||+++.+.+..+. ..++.++|||+| +++++
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEecc
Confidence 996 6566665 3567889999999999999874 3679999999999988883 457999999999 44443
Q ss_pred ---cCCcEEEEcC
Q 041916 159 ---TGSFVQILGD 168 (359)
Q Consensus 159 ---~d~~i~i~d~ 168 (359)
.|+.++||+.
T Consensus 166 r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 166 RLRVDNGFKIWSF 178 (194)
T ss_pred ceeccccEEEEEe
Confidence 3688999985
No 200
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.5e-13 Score=114.57 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=129.0
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEecCCC--CeEEEEEcCCCCEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRTGLG--RTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~--~v~~~~~sp~~~~l~s 77 (359)
|.||| ....++.++.-...+.++.++++ .|++.- .+.|.||... +.+.++.+..-.. ...+++-+.+..+||.
T Consensus 77 viIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~Laf 153 (346)
T KOG2111|consen 77 VIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAF 153 (346)
T ss_pred EEEEecccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEc
Confidence 68999 77888999988888899999876 344443 5699999987 4556666654322 2333333333345554
Q ss_pred -EeCCCeEEEEeCCCCcc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceeeEec-----cCCceeEE
Q 041916 78 -GHSGGTVTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGKECK-IKIWDLRKYEVLQTL-----PGHAKTLD 148 (359)
Q Consensus 78 -g~~dg~v~lwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~-----~~~i~~~~ 148 (359)
|-.-|.|.|-|+..... ...+.+|.+.|.|++.+.+|..+||+|..|+ |+|||..+|..+.++ ...|.+++
T Consensus 154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 44569999999886554 5678899999999999999999999999986 899999999999999 34689999
Q ss_pred EcCCc-eEEEEcC-CcEEEEcCCCC
Q 041916 149 FSQKG-LLAVGTG-SFVQILGDFSG 171 (359)
Q Consensus 149 ~s~~g-l~~~~~d-~~i~i~d~~~~ 171 (359)
|||++ ++++++| |+|+||.+...
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999 6666655 99999987553
No 201
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=1.1e-14 Score=121.38 Aligned_cols=203 Identities=16% Similarity=0.182 Sum_probs=153.8
Q ss_pred eEEEe---CC-CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-C--eEEEEEecCCCCeEEEEEcCCCC
Q 041916 2 PYIYN---RD-GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-G--EIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd---~~-g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~--~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
|.||. .+ -+..++++.|... ++++|+|..+.|++|+.|..-++|.... + ++...+.-++...+++.|+|.++
T Consensus 34 vhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en 113 (361)
T KOG1523|consen 34 VHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN 113 (361)
T ss_pred EEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc
Confidence 45665 22 3467999999998 9999999999999999999999999843 3 34455566888999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCcce----EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-----C-----------
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPL----IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-----K----------- 133 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~----~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-----~----------- 133 (359)
.||+||....|.||-+.....- ..-..+.+.|+++.|+|++-+|++|+.|+..++|..- .
T Consensus 114 kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~ 193 (361)
T KOG1523|consen 114 KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKM 193 (361)
T ss_pred eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCC
Confidence 9999999999999987654321 1122567889999999999999999999999998541 1
Q ss_pred --ceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 134 --YEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 134 --~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
|..+.++ .+.+..+.|+|+| +.-++.|+.+.+-|.....+.+........ +..++.|-.+...+++|..
T Consensus 194 PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~l----P~ls~~~ise~~vv~ag~~ 269 (361)
T KOG1523|consen 194 PFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQL----PLLSVSWISENSVVAAGYD 269 (361)
T ss_pred cHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccC----CceeeEeecCCceeecCCC
Confidence 1222333 3568999999999 777899999999995544333443333334 8889999887766666555
Q ss_pred CC
Q 041916 207 MG 208 (359)
Q Consensus 207 dg 208 (359)
-+
T Consensus 270 c~ 271 (361)
T KOG1523|consen 270 CG 271 (361)
T ss_pred CC
Confidence 44
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=4.9e-15 Score=126.41 Aligned_cols=216 Identities=15% Similarity=0.102 Sum_probs=157.6
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC------CeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM------GEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTV 84 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v 84 (359)
+.+.+|.++ +++.|+.++++|++|+.|..+++|++.. .+++..... |.+.|.|++|...+..+++|..+|+|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 345678998 9999999999999999999999999863 345544433 55889999999999999999999999
Q ss_pred EEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec-----cCCceeEEEcCCc---
Q 041916 85 TMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL-----PGHAKTLDFSQKG--- 153 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~-----~~~i~~~~~s~~g--- 153 (359)
.+-|+.+.+.+..+. ...+.|..+..+|..+.|++.+.++.|.+||.|... +..-+ +....++-|+|-.
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999988776654 234589999999999999999999999999999754 22222 4456888999987
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCC--CcceEEEEEeeCCCEEEEE--------------------cC---CC
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK--GYQIGKVSFRPYEDVLGIG--------------------HS---MG 208 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~--------------------~~---dg 208 (359)
+++.+..+-+.+||.+....++..+.....-+ .....++.|+|.|..|.+- +. +|
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 55566678899999766544443332221100 1123556677766544321 00 12
Q ss_pred eE-------------EEEEcCCCCCccccccCC
Q 041916 209 WS-------------SILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 209 ~~-------------~i~~~~~~d~~~~~~~~~ 228 (359)
.. .-+.+|+.+-++.+|.+.
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLP 322 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecC
Confidence 11 126789999999999985
No 203
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.64 E-value=8.1e-14 Score=129.30 Aligned_cols=198 Identities=14% Similarity=0.135 Sum_probs=136.9
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|+++|.+|.....+..+... .+.+|+|||++|+.++.. ..|++||+.++.... +..+.+.+.+++|+|+|..|+.
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence 66777666666666666664 889999999999887643 489999999886533 3345566778999999987664
Q ss_pred -EeCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEec--cCCceeEEE
Q 041916 78 -GHSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTL--PGHAKTLDF 149 (359)
Q Consensus 78 -g~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~--~~~i~~~~~ 149 (359)
.+.++ .|++||+.++.. ..+..+........|+|||+.|+.++.. + .|+++|+.+++..... ......+.|
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW 329 (417)
T ss_pred EECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence 44444 588899887643 3444455556678999999998776643 2 6888898876543322 345678899
Q ss_pred cCCc--eEEEEcCC---cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 150 SQKG--LLAVGTGS---FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 150 s~~g--l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+|+| ++.++.++ .|.+||+.++ ....+.... ......|+|++++|+.++.++
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~-----~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTDTG-----LDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccCCC-----CCCCceECCCCCEEEEEEeCC
Confidence 9999 44455443 7888987654 222222221 234568999999888877765
No 204
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=2.3e-14 Score=117.65 Aligned_cols=152 Identities=16% Similarity=0.274 Sum_probs=106.2
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCC-CcceEEEe-ccCCCeEEEEEcCCCCEEEEEe--CCCeEEEE
Q 041916 64 DVMRVNPFNGVVSLGHS----------GGTVTMWKPTT-AAPLIKML-CHQGPVSALAFHPNGHLMATSG--KECKIKIW 129 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~----------dg~v~lwd~~~-~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iw 129 (359)
..+.|+|+|.+|++-.. -|...+|.++. ..+...+. ...++|.+++|+|+|+.|+++. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999977665332 13455555532 23444444 2456799999999999976653 56799999
Q ss_pred EcCCceeeEec-cCCceeEEEcCCc--eEEEEc---CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 130 DLRKYEVLQTL-PGHAKTLDFSQKG--LLAVGT---GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 130 d~~~~~~~~~~-~~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
|++ ++++..+ ...+..+.|||+| +++++. .|.|.+||..+. ..+.... |. .++.++|+|+|++|++
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-~~i~~~~-~~-----~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-KKISTFE-HS-----DATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-EEeeccc-cC-----cEEEEEEcCCCCEEEE
Confidence 997 6777777 5578999999999 555553 367999997644 3333322 22 5789999999999999
Q ss_pred EcCCCeEEEEEcCCCCCccccccCCC
Q 041916 204 GHSMGWSSILVPGSGEPNFDSWVANP 229 (359)
Q Consensus 204 ~~~dg~~~i~~~~~~d~~~~~~~~~~ 229 (359)
++.... -..|+.+++|+...
T Consensus 161 a~t~~r------~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 161 ATTSPR------LRVDNGFKIWSFQG 180 (194)
T ss_pred EEeccc------eeccccEEEEEecC
Confidence 876531 23578889998753
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=4e-14 Score=119.83 Aligned_cols=180 Identities=15% Similarity=0.298 Sum_probs=131.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCC----Ccc
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTT----AAP 94 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~----~~~ 94 (359)
...++|++.-.-+|++..|-+|++||-.. .+...++. ....|+|++|-|.+ ..|+.|+..| |++|.... +.+
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRN 178 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccc
Confidence 37889999767788999999999999876 55555553 34579999999976 5677777765 89997542 111
Q ss_pred e----------EEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEE
Q 041916 95 L----------IKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 95 ~----------~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~ 158 (359)
+ ....+| .+|+++.|++||..+++++. |..|.+||..++..+.-. .+.++-+.||||| ++++.
T Consensus 179 ~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred cccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 1 111234 58999999999999999884 678999999987654433 4678899999999 88899
Q ss_pred cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 159 TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 159 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
.|+..++|+.... -.......-.+ .|...+|+|+|++|+.+....
T Consensus 258 ~davfrlw~e~q~-wt~erw~lgsg----rvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 258 CDAVFRLWQENQS-WTKERWILGSG----RVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred ccceeeeehhccc-ceecceeccCC----ceeeeeecCCCCEEEEEEcCC
Confidence 9999999963332 11122222212 799999999999876655443
No 206
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=118.31 Aligned_cols=207 Identities=15% Similarity=0.192 Sum_probs=149.6
Q ss_pred eEEEe-CCCcEEEEec-cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEE--------------EE--------
Q 041916 2 PYIYN-RDGTELHCLK-EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG--------------NF-------- 56 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~-~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------~~-------- 56 (359)
|.+|+ .+...+..++ .|... +.+.-.|+ ..|.+-+.|+.+.+|++.-+..+. .+
T Consensus 37 V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~e 115 (323)
T KOG0322|consen 37 VKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSE 115 (323)
T ss_pred EEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcch
Confidence 67888 5666666777 34444 88888887 457788899999999987532111 00
Q ss_pred -------------------------------ecCCCCeEEEEEcC-CC--CEEEEEeCCCeEEEEeCCCCc---------
Q 041916 57 -------------------------------RTGLGRTDVMRVNP-FN--GVVSLGHSGGTVTMWKPTTAA--------- 93 (359)
Q Consensus 57 -------------------------------~~~~~~v~~~~~sp-~~--~~l~sg~~dg~v~lwd~~~~~--------- 93 (359)
.+..+.+.|..|.. .+ -++++|-.+|.|.+||++++.
T Consensus 116 qll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~ 195 (323)
T KOG0322|consen 116 QLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS 195 (323)
T ss_pred hheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc
Confidence 01123344444322 22 257778899999999999873
Q ss_pred -ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--ee-e---Eec-cCCceeEEEcCCc--eEEEEcCCcE
Q 041916 94 -PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EV-L---QTL-PGHAKTLDFSQKG--LLAVGTGSFV 163 (359)
Q Consensus 94 -~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~-~---~~~-~~~i~~~~~s~~g--l~~~~~d~~i 163 (359)
.+.....|..+|.++.|.+.-..=++|+.+..+..|.+.-. .+ + .++ .-.+..+.+-||+ ++++|.|+.|
T Consensus 196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~Ri 275 (323)
T KOG0322|consen 196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRI 275 (323)
T ss_pred ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcE
Confidence 23334478999999999986666678888888999988642 21 1 122 3468899999999 7788999999
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+||+.++. .++..+.-|.. .|++++|+|+..++++++.|+.+++|-
T Consensus 276 RVyswrtl-~pLAVLkyHsa----gvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 276 RVYSWRTL-NPLAVLKYHSA----GVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred EEEEeccC-Cchhhhhhhhc----ceeEEEeCCCCchhhhccCCceEEeee
Confidence 99998777 67788888865 899999999999999988888777763
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.3e-14 Score=134.61 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=125.0
Q ss_pred eEEEe-CCCcE--EEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEE--EECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTE--LHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRY--QDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~i--wd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|++|| .+|.. +..+.+|. ..++|+|||+.|++++ .+|.+.| ||+.++. +..+..+...+...+|+|||..|
T Consensus 230 i~i~dl~tg~~~~l~~~~g~~--~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i 306 (429)
T PRK01742 230 LVVHDLRSGARKVVASFRGHN--GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSI 306 (429)
T ss_pred EEEEeCCCCceEEEecCCCcc--CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEE
Confidence 78899 55543 33333332 5789999999887764 5776555 5666665 44566676778899999999977
Q ss_pred EEEe-CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cCCceeEEEcCCc
Q 041916 76 SLGH-SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PGHAKTLDFSQKG 153 (359)
Q Consensus 76 ~sg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s~~g 153 (359)
+.++ .+|...||+++..........+.+ .+++|+|||++|++++.++ +.+||+.++...... .....+++|+|+|
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG 383 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNG 383 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCC
Confidence 6554 578888887654322222224443 4578999999998888765 566999988654322 2234678899999
Q ss_pred --eEEEEcCCcEEEEcCCC-CCCccceeecccCCCCcceEEEEEeeC
Q 041916 154 --LLAVGTGSFVQILGDFS-GSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 154 --l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
++.++.++.+.+|.+.. .+.....+..|.. .+..++|+|.
T Consensus 384 ~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g----~~~~p~wsp~ 426 (429)
T PRK01742 384 IMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG----QVKFPAWSPY 426 (429)
T ss_pred CEEEEEEcCCCceEEEEEECCCCceEEccCCCC----CCCCcccCCC
Confidence 66666777777776422 2245566665544 6888999985
No 208
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=4.7e-16 Score=135.21 Aligned_cols=202 Identities=12% Similarity=0.109 Sum_probs=165.3
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
|-.+| .++.....+.....+.++.|..+.+++|++- ...++|||- .|..++.++.| ..|..+.|-|..-+|++++.
T Consensus 153 lAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~ 229 (545)
T KOG1272|consen 153 LAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASE 229 (545)
T ss_pred eeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhh-hceEEEecC-CCcEEeehhhc-Cchhhhcccchhheeeeccc
Confidence 44556 6677777777666778899998888888775 568999994 58888888877 57899999999999999999
Q ss_pred CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eE
Q 041916 81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LL 155 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~ 155 (359)
.|.+..-|+.+|+.+..+....+.+..++-+|-+-.+-+|...|+|.+|...+.+++..+ .++|.+|++.++| ++
T Consensus 230 ~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 230 AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEe
Confidence 999999999999999999888899999999999999999999999999999998886655 7899999999999 77
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++|.|..|+|||+++-.++......| +...++||..| |++.+....+.+|-
T Consensus 310 TtG~Dr~~kIWDlR~~~ql~t~~tp~------~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFYQLHTYRTPH------PASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ecccccceeEeeeccccccceeecCC------Ccccccccccc--ceeeecCCeeeeeh
Confidence 88899999999988764333333334 67778888655 44555555566664
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=3.6e-14 Score=134.64 Aligned_cols=219 Identities=14% Similarity=0.210 Sum_probs=157.1
Q ss_pred eEEEe-CCCcEEEEeccCCC----eEEEEEec--CCCEEEEEecCCeEEEEECCC-----CeEEEEEec-------CCCC
Q 041916 2 PYIYN-RDGTELHCLKEHGA----VLKLQFLR--NHFLLASINKFGQLRYQDVTM-----GEIVGNFRT-------GLGR 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~----~~~l~~s~--~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~-------~~~~ 62 (359)
|.||| ..++.+..|..+.. ++.+.+-. |..+|++|+.||.|+||+-.. .+.+..+.+ ..+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~ 1167 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGT 1167 (1387)
T ss_pred EEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCC
Confidence 78999 88888888876543 47777765 457899999999999998532 233333321 1122
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCcee---e
Q 041916 63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEV---L 137 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~ 137 (359)
-..+.|.....+|++++.-..|+|||......+..+. +...-|++++-+- .|+.+++|..||.|++||.|...+ +
T Consensus 1168 ~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v 1247 (1387)
T KOG1517|consen 1168 GLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV 1247 (1387)
T ss_pred CeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccc
Confidence 2456787777777777778899999998776666554 3344577776553 579999999999999999997533 3
Q ss_pred Eec---cC--CceeEEEcCCc---eEEEEcCCcEEEEcCCCC-CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 138 QTL---PG--HAKTLDFSQKG---LLAVGTGSFVQILGDFSG-SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 138 ~~~---~~--~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
..+ .. +|..+.+.+.| +++++.+|.|++||++.. ......+..|.. -++.++++..++....+++|+. +
T Consensus 1248 ~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~-yGs~lTal~VH~hapiiAsGs~-q 1325 (1387)
T KOG1517|consen 1248 CVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE-YGSALTALTVHEHAPIIASGSA-Q 1325 (1387)
T ss_pred eeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc-cCccceeeeeccCCCeeeecCc-c
Confidence 332 22 38899998887 899999999999998774 222233334421 2446999999999999999999 8
Q ss_pred eEEEEEcCCCCCcc
Q 041916 209 WSSILVPGSGEPNF 222 (359)
Q Consensus 209 ~~~i~~~~~~d~~~ 222 (359)
.+.||...+..-++
T Consensus 1326 ~ikIy~~~G~~l~~ 1339 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQLNI 1339 (1387)
T ss_pred eEEEEecChhhhcc
Confidence 88888766554333
No 210
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=9.2e-15 Score=130.07 Aligned_cols=161 Identities=16% Similarity=0.230 Sum_probs=133.4
Q ss_pred cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----------eEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----------EIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+.+.+|++|.++ .|+++++++..+++|+.||+|+.|++... .....+.+|.+.|+.+++|+....|+++
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc 414 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC 414 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence 458899999998 99999999999999999999999966421 2345678999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEe------------------cc----------------------------------CCCeE
Q 041916 79 HSGGTVTMWKPTTAAPLIKML------------------CH----------------------------------QGPVS 106 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~------------------~h----------------------------------~~~v~ 106 (359)
+.||+|++|+.....+ .++. .| ...+.
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999998754433 0000 00 12356
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 107 ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 107 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
-+.++|.+.+.+++..|+.|+++|..++.+++.. ...++++++.|+| +++++.|+.+.+|.+...
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 7888999999999999999999999999998887 4468999999999 778889999999986443
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=3.8e-14 Score=136.33 Aligned_cols=219 Identities=16% Similarity=0.102 Sum_probs=156.4
Q ss_pred EeCCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 5 YNRDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 5 wd~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|+..|..+..+..|... ..++.++.+ .+++|||.||+|++||+..- +...++..-.+.+.++.+.+.+..+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~ 1113 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQF 1113 (1431)
T ss_pred CCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeE
Confidence 67789999999999886 888887765 99999999999999998641 1222333345788999999999999
Q ss_pred EEEeCCCeEEEEeCCCC--cc-----eEEEecc-CCCe-EEEEEcC-CC-CEEEEEeCCCeEEEEEcCCceeeEec----
Q 041916 76 SLGHSGGTVTMWKPTTA--AP-----LIKMLCH-QGPV-SALAFHP-NG-HLMATSGKECKIKIWDLRKYEVLQTL---- 140 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~--~~-----~~~~~~h-~~~v-~~i~~~~-~~-~~l~~~~~d~~i~iwd~~~~~~~~~~---- 140 (359)
|+|+.||.|.+.++... .. ......+ .+.+ ..-+|.. .+ ..++.+..-+.|..||+++......+
T Consensus 1114 Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99999999999998752 11 1111111 2233 3333332 23 37888888899999999986655544
Q ss_pred -cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC---EEEEEc--CCCeEEE
Q 041916 141 -PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED---VLGIGH--SMGWSSI 212 (359)
Q Consensus 141 -~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~---~l~~~~--~dg~~~i 212 (359)
.|.|++++.+|.+ ++.|+..|.+.+||++.+.....--.. ...++..+..+|... +.++++ ..+.+++
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P----~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~ 1269 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP----ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVST 1269 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc----ccCCcceEEeeccCCCCceEEEecccCCCceee
Confidence 5779999999999 677778899999998876322222222 234788888877544 444444 4567888
Q ss_pred EEcCCCCCccccccC
Q 041916 213 LVPGSGEPNFDSWVA 227 (359)
Q Consensus 213 ~~~~~~d~~~~~~~~ 227 (359)
|....+.+..-+|..
T Consensus 1270 wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1270 WNMETGLRQTVLWAS 1284 (1431)
T ss_pred eecccCcceEEEEcC
Confidence 887777888778866
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.3e-13 Score=128.72 Aligned_cols=222 Identities=17% Similarity=0.218 Sum_probs=155.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCC---CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE--------
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNH---FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR-------- 67 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-------- 67 (359)
.|.||. .+|.+++.+.+|..+ +.+.+.|.. .++.+++.||.|++||...+..+.++..+. ++.++.
T Consensus 38 ~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~ 116 (792)
T KOG1963|consen 38 FVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNL-PVHALVYKPAQADI 116 (792)
T ss_pred EEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCC-ceeEEEechhHhCc
Confidence 378999 999999999999998 999998853 577899999999999999888777655321 222222
Q ss_pred ---------------------------------------------------EcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916 68 ---------------------------------------------------VNPFNGVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 68 ---------------------------------------------------~sp~~~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
+++.|.+.+.. .+..+.+|.........
T Consensus 117 s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~ 195 (792)
T KOG1963|consen 117 SANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHT 195 (792)
T ss_pred cceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccceee
Confidence 22222221111 12345566655533110
Q ss_pred E---E-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--c-----eeeEeccCCceeEEEcCCc--eEEEEcCCcE
Q 041916 97 K---M-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK--Y-----EVLQTLPGHAKTLDFSQKG--LLAVGTGSFV 163 (359)
Q Consensus 97 ~---~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~--~-----~~~~~~~~~i~~~~~s~~g--l~~~~~d~~i 163 (359)
. . ..|.-.+++.++||+++++|++..||.|.+|.--. . ..++-....|.+++|+++| +++||..+.+
T Consensus 196 ~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 196 SSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred ccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEE
Confidence 0 0 13555689999999999999999999999995322 1 1222225689999999999 9999999999
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCCc
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPF 230 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~~ 230 (359)
.+|.+.++.+..-+-. +++|..+.++||+.+.++...|..+.++-.....-...+-.+.|.
T Consensus 276 v~Wq~~T~~kqfLPRL------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRL------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred EEEeecCCCccccccc------CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 9999888753222222 348999999999999999999998887765554444444444443
No 213
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=7.4e-14 Score=132.59 Aligned_cols=192 Identities=15% Similarity=0.204 Sum_probs=140.6
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCc---ceE
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTAA---PLI 96 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~~---~~~ 96 (359)
.-++|.....+|+++|.-..|+|||+....++..+... ...|+++.-+- .|++|++|..||.|++||.+... .+.
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence 44577665556666666889999999988777776643 34566665433 46899999999999999988653 466
Q ss_pred EEeccCCC--eEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceee------Eec-cC-CceeEEEcCCc-eEEEEcCCcEE
Q 041916 97 KMLCHQGP--VSALAFHPNGHL-MATSGKECKIKIWDLRKYEVL------QTL-PG-HAKTLDFSQKG-LLAVGTGSFVQ 164 (359)
Q Consensus 97 ~~~~h~~~--v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~------~~~-~~-~i~~~~~s~~g-l~~~~~d~~i~ 164 (359)
.+..|... |..+.+.+.|-- |++|+.||.|.+||+|+.... ... -| ..+++..+++. ++++|..+.|.
T Consensus 1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIK 1328 (1387)
T ss_pred eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEE
Confidence 67788887 999999987655 999999999999999984211 111 13 48999999999 88877779999
Q ss_pred EEcCCCCCCccceeecccC---CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 165 ILGDFSGSHNYSRYMGHSM---VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
||++.. ..+..+..+.. .....+.+++|+|.--.+++|+.|.++.++-+
T Consensus 1329 Iy~~~G--~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1329 IYSLSG--EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred EEecCh--hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 999543 22222222211 13346799999999988999888887777654
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.60 E-value=5.1e-15 Score=130.96 Aligned_cols=92 Identities=23% Similarity=0.313 Sum_probs=87.0
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
++.++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|||||++|++|+.|-.|.||.+...+.+..=++
T Consensus 293 in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG 372 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG 372 (636)
T ss_pred ccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc
Confidence 48899999999999999999999999999888888887778999999999999999999999999999999998888899
Q ss_pred cCCCeEEEEEcC
Q 041916 101 HQGPVSALAFHP 112 (359)
Q Consensus 101 h~~~v~~i~~~~ 112 (359)
|.+.|+.|+|+|
T Consensus 373 HkSWVs~VaFDp 384 (636)
T KOG2394|consen 373 HKSWVSVVAFDP 384 (636)
T ss_pred cccceeeEeecc
Confidence 999999999998
No 215
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=5.9e-13 Score=123.88 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=132.1
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|+++|.+|.....+..+... ....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+...+|+|||+.|+.
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEE
Confidence 56677666666666666665 899999999988776543 479999999886533 3333445567899999987764
Q ss_pred -EeCCC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCceeeEec-cC-CceeEEE
Q 041916 78 -GHSGG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E--CKIKIWDLRKYEVLQTL-PG-HAKTLDF 149 (359)
Q Consensus 78 -g~~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~~-~~-~i~~~~~ 149 (359)
.+.+| .|.+||+.++.. ..+..+........|+|||+.|+..+. + ..|+++|+.+++..... .+ ......|
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL 338 (430)
T ss_pred EEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence 44455 588889987754 345555666778899999998877664 3 36888888777643322 22 3456789
Q ss_pred cCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 150 SQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 150 s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
+|+| ++..+. ++ .|.+||+.++. . ..+. ... ......|+|+|+.++..+.+
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~-~-~~lt-~~~----~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGS-V-RILT-DTS----LDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCC-E-EEcc-CCC----CCCCceECCCCCEEEEEEec
Confidence 9999 433332 33 58889976652 2 2222 211 22356899999998876654
No 216
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.2e-13 Score=127.26 Aligned_cols=210 Identities=14% Similarity=0.149 Sum_probs=151.8
Q ss_pred cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--C--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 041916 17 EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--G--EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 17 ~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~ 91 (359)
.|.-. +|.++||+++++|+|..||.|.+|.--. + .....+.-|...|++++|+++|.+|++|+..|.+.+|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 35555 9999999999999999999999997432 1 23456777889999999999999999999999999999999
Q ss_pred CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------------cCCceeEEEcCC-c-eE
Q 041916 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--------------PGHAKTLDFSQK-G-LL 155 (359)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------------~~~i~~~~~s~~-g-l~ 155 (359)
++ ..-+..-.++|..+.++||+.+.+....|..|.+..+.+.....++ .+-.+.++++|. + ++
T Consensus 283 ~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~v 361 (792)
T KOG1963|consen 283 GK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLV 361 (792)
T ss_pred CC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCcee
Confidence 87 3444556789999999999999999999999999987554332222 122477889994 3 77
Q ss_pred EEEcCCcEEEEcCCCCCCccceee-cccCCC-----CcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCCC
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYM-GHSMVK-----GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANP 229 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~-----~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~~ 229 (359)
..+..|.|.+||+.+......... .+.... .-.+++++.+-.|.+++++-.. ...+....+.-.+++|..++
T Consensus 362 ln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~--~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 362 LNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEAR--IDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred ecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeee--ehhhhccCceEEEEEEEEcC
Confidence 788899999999887643322111 010001 1257788888889999886433 12222233344556665543
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=4.7e-13 Score=114.43 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=137.1
Q ss_pred CEEEEEecCCeEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEEEeCC--CeEEEEeCCCCcceEEEecc--
Q 041916 31 FLLASINKFGQLRYQDVTMGE----IVGNFRTGLGRTDVMRVNPFN-GVVSLGHSG--GTVTMWKPTTAAPLIKMLCH-- 101 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~d--g~v~lwd~~~~~~~~~~~~h-- 101 (359)
..|++|-.+|.+.+|....+. .+..+..+ .++..|.-+|.. .++++|+.. ..+.+||+.+.+.+..-..-
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn 194 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPN 194 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCC
Confidence 357788889999999988543 34445444 456666666654 456668888 78999999887544432211
Q ss_pred -------CCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEE
Q 041916 102 -------QGPVSALAFHPN--GHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQIL 166 (359)
Q Consensus 102 -------~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~ 166 (359)
+-.++++.|-|. ...||+++.-+.|++||.+.+ +|+..| ..+++++...|+| ++++..-+.+..|
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 224678899886 788999999999999999975 577777 6789999999999 7777788999999
Q ss_pred cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
|++.+......+.+..+ .|.++..+|.+.+|++++-|.+++|+..-.
T Consensus 275 D~r~~kl~g~~~kg~tG----sirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITG----SIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCceeeccccCCccC----CcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 98777433344666655 899999999999999988888777766443
No 218
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.4e-14 Score=122.43 Aligned_cols=148 Identities=20% Similarity=0.305 Sum_probs=114.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--
Q 041916 64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-- 141 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-- 141 (359)
.+++|+++|..+++|+.||++++|+..+...+.....|...|.++.|+|||.+|++.+.| ..+||+..++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 579999999999999999999999977777777788899999999999999999999999 89999999997766652
Q ss_pred ---CCceeEEEcCCc-----eEEEEc--CCcEEEEcCCCCC-----CccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 142 ---GHAKTLDFSQKG-----LLAVGT--GSFVQILGDFSGS-----HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 142 ---~~i~~~~~s~~g-----l~~~~~--d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
.....+.|+.++ ++++.. .+.|..|++..-. +..+....+. .|++++.+++|++++.|+.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~-----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK-----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC-----cceeEEEcCCCcEEEEecc
Confidence 235677787765 444432 3566665533211 1122222332 6999999999999999999
Q ss_pred CCeEEEEEcCC
Q 041916 207 MGWSSILVPGS 217 (359)
Q Consensus 207 dg~~~i~~~~~ 217 (359)
+|.+.++.+-+
T Consensus 302 dGsVai~~~~~ 312 (398)
T KOG0771|consen 302 DGSVAIYDAKS 312 (398)
T ss_pred CCcEEEEEece
Confidence 99888877543
No 219
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.57 E-value=2.3e-14 Score=126.89 Aligned_cols=167 Identities=14% Similarity=0.153 Sum_probs=127.2
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEE
Q 041916 31 FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAF 110 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~ 110 (359)
..|+.++.||.+.+.+- .++.-..+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-...++.-...+|.|++|
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 46888899999999984 5777788999999999999999999999999999999998 445333333345668999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916 111 HPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK 185 (359)
Q Consensus 111 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 185 (359)
.|+++.++.|.. +.+.+=-+.....+..+ .+-|.++.|+|.. ++++|.|-..+|||. .+ ..+.....|.
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G-~~Lf~S~~~e--- 227 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QG-ANLFTSAAEE--- 227 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cC-cccccCChhc---
Confidence 998887766654 45666555554434334 5668999999988 778889999999993 44 3444444444
Q ss_pred CcceEEEEEeeCCCEEEEEcCC
Q 041916 186 GYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 186 ~~~v~~~~~~p~~~~l~~~~~d 207 (359)
.+|++++|.|+ ..+++++.+
T Consensus 228 -y~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 228 -YAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred -cceeeeeeccc-cceeeeeee
Confidence 49999999999 555665543
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3e-13 Score=115.62 Aligned_cols=182 Identities=15% Similarity=0.182 Sum_probs=143.0
Q ss_pred EEEEeccCCCeEEEEEecCC-CEEEEEecC--CeEEEEECCCCeEEEEEecCC---------CCeEEEEEcCC--CCEEE
Q 041916 11 ELHCLKEHGAVLKLQFLRNH-FLLASINKF--GQLRYQDVTMGEIVGNFRTGL---------GRTDVMRVNPF--NGVVS 76 (359)
Q Consensus 11 ~~~~l~~h~~~~~l~~s~~~-~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~sp~--~~~l~ 76 (359)
.+..+..+.+...|.-+|.. .++|+||.. ..+.+||+...+.+.+-+.-. -.++++.|-|. ...||
T Consensus 141 ~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fa 220 (412)
T KOG3881|consen 141 KLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFA 220 (412)
T ss_pred cceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEE
Confidence 34445555555666666643 566778888 899999999886665543211 13567889887 78999
Q ss_pred EEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcC
Q 041916 77 LGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQ 151 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~ 151 (359)
+++.-+.|++||++.+ .|+..+.....+++++...|+|+++++|..-+.+..||+|.++.... + .|.|+++..+|
T Consensus 221 t~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp 300 (412)
T KOG3881|consen 221 TITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP 300 (412)
T ss_pred EEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC
Confidence 9999999999999865 57888888888999999999999999999999999999999987666 3 68899999999
Q ss_pred Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916 152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
.+ ++++|-|..|+|+|+.+.......|... .++++.+.++-
T Consensus 301 ~~~~las~GLDRyvRIhD~ktrkll~kvYvKs------~lt~il~~~~~ 343 (412)
T KOG3881|consen 301 THPVLASCGLDRYVRIHDIKTRKLLHKVYVKS------RLTFILLRDDV 343 (412)
T ss_pred CCceEEeeccceeEEEeecccchhhhhhhhhc------cccEEEecCCc
Confidence 98 7778899999999988754444555544 67778777653
No 221
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.4e-14 Score=125.17 Aligned_cols=199 Identities=15% Similarity=0.226 Sum_probs=155.8
Q ss_pred EeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 14 CLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 14 ~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
.++....++.+.|+..|.||++... ...|.|+++..+.....|+-..+.|.++.|+|...+|++++. ..|++||+.
T Consensus 517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~ 595 (733)
T KOG0650|consen 517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS 595 (733)
T ss_pred EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh
Confidence 3444455599999999999998754 468899999887777777767788999999999988888765 469999998
Q ss_pred CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc-eE-EEEcCCcEE
Q 041916 91 TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG-LL-AVGTGSFVQ 164 (359)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g-l~-~~~~d~~i~ 164 (359)
....+..+....-.|.+++.+|.|..|+.++.|+.+..||+.-+ ++.+++ ...+++++|++.- |+ +++.||++.
T Consensus 596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~ 675 (733)
T KOG0650|consen 596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI 675 (733)
T ss_pred HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence 87777777666778999999999999999999999999999764 455555 5578999999988 55 555669988
Q ss_pred EEcCC------CCC--CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 165 ILGDF------SGS--HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 165 i~d~~------~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
||.-. .+. -++..+.+|.......|.++.|+|...+|++++.||.+++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 87521 110 13345667755334458899999999999999888887776
No 222
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.4e-12 Score=121.37 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=127.4
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|+++|.+|.....+..+... .+..|+|||+.|+..+.+ ..|.+||+.+++... +....+.....+|+|||+.|+.
T Consensus 200 l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 200 LMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEE
Confidence 45566556554555555555 889999999988876542 369999998876432 2222334457899999987764
Q ss_pred -EeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C--CeEEEEEcCCceeeEe-ccC-CceeEEE
Q 041916 78 -GHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E--CKIKIWDLRKYEVLQT-LPG-HAKTLDF 149 (359)
Q Consensus 78 -g~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d--~~i~iwd~~~~~~~~~-~~~-~i~~~~~ 149 (359)
.+.+|. |.+||+.+++. ..+..+.......+|+|||++|+..+. + ..|.++|+.+++.... +.+ .....+|
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~ 357 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSI 357 (448)
T ss_pred EEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeE
Confidence 556665 77788877653 444455556778999999998877654 3 3577778877764332 222 3456799
Q ss_pred cCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 150 SQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 150 s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+|+| ++..+. ++ .|.++|+.++. ...+.... ......|+|+|+.|+..+.++
T Consensus 358 SpDG~~l~~~~~~~g~~~I~~~dl~~g~--~~~lt~~~-----~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 358 TPDGRSMIMVNRTNGKFNIARQDLETGA--MQVLTSTR-----LDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCCCC--eEEccCCC-----CCCCceECCCCCEEEEEEecC
Confidence 9999 433333 34 45667765552 22222221 123457999999887766543
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.3e-12 Score=121.00 Aligned_cols=187 Identities=16% Similarity=0.135 Sum_probs=122.6
Q ss_pred eEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEE-ecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASI-NKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|++|+ .+|+.. .+....+ ...+.|+|||..|+.. +.+| .|.+||+.++.... +..+...+....|+|||+.|+
T Consensus 225 i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 225 LVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred EEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEE
Confidence 67777 555432 2322223 3678999999988754 3344 59999998887544 444445678899999999887
Q ss_pred EEeCC-Ce--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEecc-CCceeEEE
Q 041916 77 LGHSG-GT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQTLP-GHAKTLDF 149 (359)
Q Consensus 77 sg~~d-g~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~-~~i~~~~~ 149 (359)
..+.+ |. |.++|+.++.. ..+..+...+.+++|+|||++|+..+.+ ..|.+||+.++....... .......|
T Consensus 303 f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~ 381 (429)
T PRK03629 303 YTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSI 381 (429)
T ss_pred EEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceE
Confidence 77654 44 55557766543 3344444456779999999998876643 358899998876432222 23457889
Q ss_pred cCCc--eEEEEcCC---cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 150 SQKG--LLAVGTGS---FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 150 s~~g--l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
+||| ++.++.++ .+.++++ ++ .....+..|.. .+...+|+|-
T Consensus 382 SpDG~~i~~~s~~~~~~~l~~~~~-~G-~~~~~l~~~~~----~~~~p~Wsp~ 428 (429)
T PRK03629 382 APNGTMVIYSSSQGMGSVLNLVST-DG-RFKARLPATDG----QVKFPAWSPY 428 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEEC-CC-CCeEECccCCC----CcCCcccCCC
Confidence 9999 55555553 4777775 33 34455555544 6788888873
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.52 E-value=8.7e-14 Score=113.07 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=110.1
Q ss_pred CEEEEEecCCeEEEEECCCCe----------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--cc--eE
Q 041916 31 FLLASINKFGQLRYQDVTMGE----------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA--AP--LI 96 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~--~~--~~ 96 (359)
.+|++|-.+|.+.+||+.++. .......|..+|.++.+.+.-..=++|+.+-.+..|+++.. .+ ..
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 356778889999999999983 33344578899999999876666677888888999987643 21 11
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916 97 KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGD 168 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~ 168 (359)
.+.-....|..+.+-||++.+||++.|+.|++|..++..++..+ .+.|++++|+|+. +++++.|+.|.+|++
T Consensus 246 e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 22222345788999999999999999999999999999988777 5789999999995 777889999999985
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.8e-12 Score=119.24 Aligned_cols=186 Identities=14% Similarity=0.221 Sum_probs=121.7
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEE-EEecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLA-SINKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|++|| .+|.. ..+..+.+. .+++|+|||..|+ +.+.+| .|++||+.+++. ..+..+......++|+|||+.|+
T Consensus 230 l~~~dl~~g~~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~ 307 (433)
T PRK04922 230 IYVQDLATGQR-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIY 307 (433)
T ss_pred EEEEECCCCCE-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence 77888 55554 334444455 6889999998775 445454 699999988874 44555555567889999999888
Q ss_pred EEeC-CCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEeccC-CceeEEE
Q 041916 77 LGHS-GGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTLPG-HAKTLDF 149 (359)
Q Consensus 77 sg~~-dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~-~i~~~~~ 149 (359)
.++. +|. |+++|+.+++. ..+..+......++|+|||++|+..+.++ .|.+||+.++.......+ ....+.|
T Consensus 308 f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~ 386 (433)
T PRK04922 308 FTSDRGGRPQIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSF 386 (433)
T ss_pred EEECCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCceE
Confidence 7664 444 66677766653 22332334455789999999998776443 699999988765432222 4567899
Q ss_pred cCCc--eEEEEc---CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee
Q 041916 150 SQKG--LLAVGT---GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP 196 (359)
Q Consensus 150 s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 196 (359)
+|+| ++..+. .+.|.++++. + .....+..+.. .+..++|+|
T Consensus 387 spdG~~i~~~s~~~g~~~L~~~~~~-g-~~~~~l~~~~g----~~~~p~wsp 432 (433)
T PRK04922 387 APNGSMVLYATREGGRGVLAAVSTD-G-RVRQRLVSADG----EVREPAWSP 432 (433)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC-C-CceEEcccCCC----CCCCCccCC
Confidence 9999 343333 2467888753 3 23344433322 566777776
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1e-11 Score=114.65 Aligned_cols=198 Identities=11% Similarity=0.062 Sum_probs=122.1
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCE--E-EEEecC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFL--L-ASINKF--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~--l-~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|++.|.+|.....+...... .+-.|||||.. + ++...+ ..|.+.++.+|+.. .+....+.....+|||||+.|
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEE
Confidence 45666666666666665555 78899999864 2 233333 46888899877643 333344455678999999887
Q ss_pred EEEeC-----CCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCe--EEEEEcCC-ceeeEec---
Q 041916 76 SLGHS-----GGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGHLMATSG-KECK--IKIWDLRK-YEVLQTL--- 140 (359)
Q Consensus 76 ~sg~~-----dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~--i~iwd~~~-~~~~~~~--- 140 (359)
+..+. +..+.+|++..+ .+......+.+.....+|+|||+.|+..+ .+|. |.++++.. +.....+
T Consensus 246 af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~ 325 (428)
T PRK01029 246 AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK 325 (428)
T ss_pred EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC
Confidence 76543 223445776653 33332323334456789999999887765 4564 44445542 2222222
Q ss_pred cCCceeEEEcCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 141 PGHAKTLDFSQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 141 ~~~i~~~~~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
...+....|||+| ++.++.+ ..|.+||+.++. . ..+..... .+..+.|+|||+.|+..+.
T Consensus 326 ~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~-~-~~Lt~~~~----~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 326 YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR-D-YQLTTSPE----NKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC-e-EEccCCCC----CccceEECCCCCEEEEEEC
Confidence 3456789999999 4444332 479999976662 2 22322211 4677899999998875443
No 227
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.50 E-value=1.7e-14 Score=133.63 Aligned_cols=164 Identities=22% Similarity=0.324 Sum_probs=133.4
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
|+||. .++.++..+++|.+- +.++.+.+..++++++.|..|++|.+.++.++..+.+|.+.|++++|+|-. +.+
T Consensus 214 vKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss 289 (1113)
T KOG0644|consen 214 VKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSS 289 (1113)
T ss_pred eeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCC
Confidence 68999 888999999999987 999999998999999999999999999999999999999999999999953 667
Q ss_pred CCCeEEEEeCC---------------------------------------------------------------------
Q 041916 80 SGGTVTMWKPT--------------------------------------------------------------------- 90 (359)
Q Consensus 80 ~dg~v~lwd~~--------------------------------------------------------------------- 90 (359)
.||++++||.+
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~ 369 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVV 369 (1113)
T ss_pred CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccce
Confidence 88888888753
Q ss_pred --------------CCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC
Q 041916 91 --------------TAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK 152 (359)
Q Consensus 91 --------------~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~ 152 (359)
++..++.+.+|...+..+.++| +.....+++.||...|||+-.|.+++.+ .+.+....||++
T Consensus 370 ~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqd 449 (1113)
T KOG0644|consen 370 TARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQD 449 (1113)
T ss_pred eeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCC
Confidence 1111111224566677888888 5555678999999999999999888777 345778899999
Q ss_pred c-eEEEEcC-CcEEEEcCC
Q 041916 153 G-LLAVGTG-SFVQILGDF 169 (359)
Q Consensus 153 g-l~~~~~d-~~i~i~d~~ 169 (359)
| -++++.+ |.++|....
T Consensus 450 gts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 450 GTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred CceEecCCCCCceEEeccC
Confidence 9 5565554 889988743
No 228
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.50 E-value=3.4e-12 Score=118.63 Aligned_cols=184 Identities=17% Similarity=0.199 Sum_probs=131.2
Q ss_pred CeEEEEECCCC-eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcc--eEEE----eccCCCeEEEEEc
Q 041916 40 GQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTAAP--LIKM----LCHQGPVSALAFH 111 (359)
Q Consensus 40 g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~~--~~~~----~~h~~~v~~i~~~ 111 (359)
+.+.+|++... .+-..+. ....|.|++|+|. ..+++.|+.+|.|.+||++.+.. ...+ ..|..+++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 57999999876 3333443 4578999999995 47888899999999999987654 2222 3689999999997
Q ss_pred CC--CCEEEEEeCCCeEEEEEcCCcee-eEec--------------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCC-
Q 041916 112 PN--GHLMATSGKECKIKIWDLRKYEV-LQTL--------------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFS- 170 (359)
Q Consensus 112 ~~--~~~l~~~~~d~~i~iwd~~~~~~-~~~~--------------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~- 170 (359)
.+ +.-+++++.||.|..|+++.... +... ...++++.|.|.. +++|+.+|.|.--+...
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 64 34499999999999999987432 1111 1346899998866 78888889888743221
Q ss_pred --CC----CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE--------------------------------
Q 041916 171 --GS----HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI-------------------------------- 212 (359)
Q Consensus 171 --~~----~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i-------------------------------- 212 (359)
.. +....+..| .++|+++.++|.+.-++..+.|..++|
T Consensus 381 ~~~~~~~~~~~~~~~~h----~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpav 456 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITH----IGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAV 456 (555)
T ss_pred ccccccccccccccccc----CcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceE
Confidence 21 112233334 449999999999875555444665444
Q ss_pred EEcCCCCCccccccCC
Q 041916 213 LVPGSGEPNFDSWVAN 228 (359)
Q Consensus 213 ~~~~~~d~~~~~~~~~ 228 (359)
|+++.++|++.+||+.
T Consensus 457 F~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 457 FATVDGDGNLDIWDLL 472 (555)
T ss_pred EEEEcCCCceehhhhh
Confidence 6777889999999984
No 229
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=122.36 Aligned_cols=160 Identities=13% Similarity=0.206 Sum_probs=122.9
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEE
Q 041916 54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP--NGHLMATSGKECKIKIWD 130 (359)
Q Consensus 54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd 130 (359)
..+.+|.+.|+|+.|+.+|.+|++||.|-.+.|||+-..+++..+. +|...|.++.|-| +...+++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 5678999999999999999999999999999999998888888876 8999999999999 556789999999999999
Q ss_pred cCCce----------eeEec---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccc------eeecccCCCCcc
Q 041916 131 LRKYE----------VLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYS------RYMGHSMVKGYQ 188 (359)
Q Consensus 131 ~~~~~----------~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~ 188 (359)
+...+ ....+ ...|..|+..|++ +.+++.||+|+-||++....+.. .+..... ..-.
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~-~lie 202 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP-QLIE 202 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch-hhhe
Confidence 98521 22222 3457778888888 88999999999999876322111 1111100 1124
Q ss_pred eEEEEEeeCC-CEEEEEcCCCeEEEEE
Q 041916 189 IGKVSFRPYE-DVLGIGHSMGWSSILV 214 (359)
Q Consensus 189 v~~~~~~p~~-~~l~~~~~dg~~~i~~ 214 (359)
..++..+|.. .+|++|+.+-+.+++.
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD 229 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYD 229 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhh
Confidence 6778888865 4688888887766654
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.6e-12 Score=119.11 Aligned_cols=187 Identities=14% Similarity=0.215 Sum_probs=117.8
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEE-EEecCCeEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLA-SINKFGQLRYQ--DVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~-s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|++|| .+|... .+....+. .+.+|+|||..|+ +.+.+|...|| |+.++. ...+..+.+......|+|||+.|+
T Consensus 222 I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~ 299 (427)
T PRK02889 222 VYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIY 299 (427)
T ss_pred EEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEE
Confidence 78899 666543 34333344 7899999998776 45667765555 454444 455555555667789999999877
Q ss_pred EEeC-CCeEEEEeC--CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEec-cCCceeEEE
Q 041916 77 LGHS-GGTVTMWKP--TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTL-PGHAKTLDF 149 (359)
Q Consensus 77 sg~~-dg~v~lwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~ 149 (359)
..+. +|...+|.+ .++.. ..+..+.......+|+|||++|+.++.++ .|.+||+.++...... ......+.|
T Consensus 300 f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~ 378 (427)
T PRK02889 300 FTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTRDESPSF 378 (427)
T ss_pred EEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCCccCceE
Confidence 6654 456666654 44432 22222233345689999999998877654 6999999887654333 224578899
Q ss_pred cCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 150 SQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 150 s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
+|+| ++.++. +| .+.+.+. .+ .....+..+.+ .+...+|+|.
T Consensus 379 spdg~~l~~~~~~~g~~~l~~~~~-~g-~~~~~l~~~~g----~~~~p~wsp~ 425 (427)
T PRK02889 379 APNGRYILYATQQGGRSVLAAVSS-DG-RIKQRLSVQGG----DVREPSWGPF 425 (427)
T ss_pred CCCCCEEEEEEecCCCEEEEEEEC-CC-CceEEeecCCC----CCCCCccCCC
Confidence 9999 444443 33 4566664 33 33334433322 5677788774
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.49 E-value=4.7e-13 Score=112.14 Aligned_cols=184 Identities=17% Similarity=0.271 Sum_probs=130.0
Q ss_pred EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCcceEEEecc
Q 041916 23 KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-LGHSGGTVTMWKPTTAAPLIKMLCH 101 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-sg~~dg~v~lwd~~~~~~~~~~~~h 101 (359)
-.+|||+|+++|+++.- .+.|-|..+-+..+.+.. -..|.-+.|..|..+++ ....|+.|.+|++.+.+-..+++..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 46899999999999866 888889877665444433 35677889998876555 4578899999999998888888888
Q ss_pred CCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEc------------------
Q 041916 102 QGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGT------------------ 159 (359)
Q Consensus 102 ~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~------------------ 159 (359)
+.++.+++|||||+.| .+..-|-.|.+|.+.+.+....- ...+..++|+|+| +.+...
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 8899999999999664 55666889999999886654332 4456777888887 443321
Q ss_pred -------------------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 160 -------------------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 160 -------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++.+.+||..-. ...+.-+ .+-.+..+.|+|.+++|++|+.|+..+++.
T Consensus 171 l~~f~~dT~DltgieWsPdg~~laVwd~~Le---ykv~aYe---~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE---YKVYAYE---RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHhcCCCcccccCceECCCCcEEEEecchhh---heeeeee---eccceeEEEeccccceEEeeccchhhhhhc
Confidence 122334441111 1112222 222578889999999999988888776643
No 232
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.4e-12 Score=111.63 Aligned_cols=157 Identities=13% Similarity=0.232 Sum_probs=124.4
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC------CCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916 55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT------TAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIK 127 (359)
Q Consensus 55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~------~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~ 127 (359)
-+.+|.+.|+++.|+.++++|++|+.|..+.+|.+. +.+++..+. .|.+.|.|++|+....++++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 356899999999999999999999999999999974 446666655 4668999999999999999999999999
Q ss_pred EEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-
Q 041916 128 IWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED- 199 (359)
Q Consensus 128 iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~- 199 (359)
+.|+.+.+.+..+ .+.|..+..+|.. +++++.++.|.+||.+........+..-. .+....++-|+|...
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN--~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN--SGKNFYTAEFHPETPA 208 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC--CCccceeeeecCCCce
Confidence 9999998888777 3579999999977 77778889999999876644444443222 344788999999875
Q ss_pred EEEEEcCCCeEEEE
Q 041916 200 VLGIGHSMGWSSIL 213 (359)
Q Consensus 200 ~l~~~~~dg~~~i~ 213 (359)
+|++++..|-..+|
T Consensus 209 Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 209 LILVNSETGGPNVF 222 (609)
T ss_pred eEEeccccCCCCce
Confidence 44555555433443
No 233
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.6e-11 Score=109.15 Aligned_cols=198 Identities=11% Similarity=-0.006 Sum_probs=126.7
Q ss_pred eEEEeCCCcEEEEeccCCCeEEEEEecCCCE-EEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFL-LASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|++-|.+|.....+..........|+|||+. ++..+. ...|.++|+.+|+..... ...+......|+|||..|+.
T Consensus 171 l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~ 249 (419)
T PRK04043 171 IVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLL 249 (419)
T ss_pred EEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEE
Confidence 4455566665555555442388999999974 554333 357999999888754433 34556677889999976654
Q ss_pred E-eC--CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEeccCCceeEEEcC
Q 041916 78 G-HS--GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTLPGHAKTLDFSQ 151 (359)
Q Consensus 78 g-~~--dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~~i~~~~~s~ 151 (359)
. +. +..|.++|+.++. ...+..+.+......|+|||+.|+..+.. + .|.++|+.++..............|||
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SP 328 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVST 328 (419)
T ss_pred EEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECC
Confidence 3 33 3568888887775 34444444444567899999988776642 2 688889988766443322222358999
Q ss_pred Cc--eEEEEcC---------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 152 KG--LLAVGTG---------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 152 ~g--l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+| ++..+.. ..|.+.|+.++. ...+.... ......|+|||+.++..+..+
T Consensus 329 DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~--~~~LT~~~-----~~~~p~~SPDG~~I~f~~~~~ 389 (419)
T PRK04043 329 YKNYIVYSSRETNNEFGKNTFNLYLISTNSDY--IRRLTANG-----VNQFPRFSSDGGSIMFIKYLG 389 (419)
T ss_pred CCCEEEEEEcCCCcccCCCCcEEEEEECCCCC--eEECCCCC-----CcCCeEECCCCCEEEEEEccC
Confidence 99 4333322 368888876652 23333221 233588999999887766554
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.47 E-value=1.1e-11 Score=103.47 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=106.5
Q ss_pred eEEEe--CCCcEEEEeccCCCe-EEEEEec--CCCEEEE-EecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCC
Q 041916 2 PYIYN--RDGTELHCLKEHGAV-LKLQFLR--NHFLLAS-INKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd--~~g~~~~~l~~h~~~-~~l~~s~--~~~~l~s-~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~~ 73 (359)
|+||. .+-+.++.+..-..+ --++..| +..+||. |-.-|.|+|-|+...+. ...+.+|.+.|.|++.+-+|.
T Consensus 115 I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt 194 (346)
T KOG2111|consen 115 IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT 194 (346)
T ss_pred EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc
Confidence 67888 355667777665555 2233344 3445554 33469999999986554 477889999999999999999
Q ss_pred EEEEEeCCCe-EEEEeCCCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 74 VVSLGHSGGT-VTMWKPTTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 74 ~l~sg~~dg~-v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
++|++|..|+ |+|||..+|..+..+.. ....|.+|+|||++.+|+++|.-|+|.+|.++..
T Consensus 195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999998 89999999999999873 3446999999999999999999999999998763
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.47 E-value=1.8e-11 Score=102.72 Aligned_cols=104 Identities=18% Similarity=0.300 Sum_probs=79.7
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee
Q 041916 105 VSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY 178 (359)
Q Consensus 105 v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~ 178 (359)
+.-++|++|..+++|-.. -..+.+||++..+....+ ..+|....|+|.. ++.+.....+++|.+ .+...+
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~p-sg~~~V--- 396 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP-SGPRVV--- 396 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcC-CCceEE---
Confidence 567999999999998764 357999999987765554 6799999999988 777777789999984 331221
Q ss_pred ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 179 MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 179 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+.+. .+..|..++|.-+|..++..+.|.+..-++
T Consensus 397 -~vP~-~GF~i~~l~W~~~g~~i~l~~kDafc~a~v 430 (447)
T KOG4497|consen 397 -GVPK-KGFNIQKLQWLQPGEFIVLCGKDAFCVAIV 430 (447)
T ss_pred -ecCC-CCceeeeEEecCCCcEEEEEcCCceEEEEe
Confidence 1112 345899999999999999999998655544
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=1.1e-11 Score=111.37 Aligned_cols=172 Identities=15% Similarity=0.165 Sum_probs=137.7
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeEEEEEec---CCCCeEEEEEc------C--------------CCCEEEEEeCCCeE
Q 041916 28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRT---GLGRTDVMRVN------P--------------FNGVVSLGHSGGTV 84 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s------p--------------~~~~l~sg~~dg~v 84 (359)
|...++|....||.++|||+..++....|.. -.+..++..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4467899999999999999999887666642 22445555552 2 23467888899999
Q ss_pred EEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEEc
Q 041916 85 TMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVGT 159 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~~ 159 (359)
.+|++..++.-..+. .|.+.|+++.++.+-..|++++.|+.+..|+......+..+ +..+.+++++|||-+.+..
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999998877776 79999999999999999999999999999999998888877 3468999999999323333
Q ss_pred CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-----CCEEEEE
Q 041916 160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-----EDVLGIG 204 (359)
Q Consensus 160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~l~~~ 204 (359)
.+.|.+||+.+. +.+..+.+|.. +|.++.|... |.++.++
T Consensus 163 s~~ik~~~~~~k-evv~~ftgh~s----~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 163 SRQIKVLDIETK-EVVITFTGHGS----PVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred cceEEEEEccCc-eEEEEecCCCc----ceEEEEEEEeccccccceeeec
Confidence 579999998776 78888888866 9999999887 5555543
No 237
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5.8e-12 Score=112.80 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=127.4
Q ss_pred CCCe-EEEEEecCCCEE-EEEecCCeEEEEECCCCeEEE----------------------------EEecCC-------
Q 041916 18 HGAV-LKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVG----------------------------NFRTGL------- 60 (359)
Q Consensus 18 h~~~-~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~----------------------------~~~~~~------- 60 (359)
|..+ +.|..+|||+|+ |||..--.|++||+..-.... .+.-|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 5556 999999999875 667778899999987432110 011111
Q ss_pred ----CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee
Q 041916 61 ----GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV 136 (359)
Q Consensus 61 ----~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 136 (359)
.....|+++.-..-|++++....|+-+++..|..+..+....+.++++..++-..+|++|+.+|.|-.||.|+...
T Consensus 130 ~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr 209 (703)
T KOG2321|consen 130 TRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR 209 (703)
T ss_pred eecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh
Confidence 0122344443333355555666788899999998888887788999999999999999999999999999998665
Q ss_pred eEec---------cC-----CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 137 LQTL---------PG-----HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 137 ~~~~---------~~-----~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
+..+ ++ .|+++.|+.+| +.+|+..|.+.|||++...+.+. ..|. ...+|..+.|.+.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~--kdh~--~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV--KDHG--YELPIKKLDWQDT 282 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee--cccC--Cccceeeeccccc
Confidence 5544 12 38999999999 66677889999999987744333 3332 2448999999776
No 238
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=3.6e-11 Score=108.44 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=119.3
Q ss_pred CEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916 31 FLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA 109 (359)
Q Consensus 31 ~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~ 109 (359)
+++ ++-..++.|.+.|..+.+.+..+.........+.|+|||+++++++.||.|.++|+.+.+.+.++..... ..+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence 455 4455689999999999999999987655555688999999999999999999999999999988876544 57899
Q ss_pred EcCCCCEEEEEe-CCCeEEEEEcCCceeeEecc----------CCceeEEEcCCc--eEEEEcC-CcEEEEcCCCCCCcc
Q 041916 110 FHPNGHLMATSG-KECKIKIWDLRKYEVLQTLP----------GHAKTLDFSQKG--LLAVGTG-SFVQILGDFSGSHNY 175 (359)
Q Consensus 110 ~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~----------~~i~~~~~s~~g--l~~~~~d-~~i~i~d~~~~~~~~ 175 (359)
+++||+++++++ .++.+.++|..+.+++..++ ..+..+..+|.. +++.-.+ +.|.+.|........
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988776 58999999999999988772 135677778877 4444444 788888865542222
Q ss_pred ceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 176 SRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 176 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
...... +....+..|+|++++++++
T Consensus 165 ~~~i~~----g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 165 VTTIKV----GRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEEE------TTEEEEEE-TTSSEEEEE
T ss_pred eeeecc----cccccccccCcccceeeec
Confidence 222222 2267889999999987765
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.43 E-value=9.7e-11 Score=105.66 Aligned_cols=169 Identities=18% Similarity=0.248 Sum_probs=123.0
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
|.|.| .+.+.+..+.....+ ..+.|+|||+++++++.||.|.++|+.+++.+.++.... ...++++|+||+++++++
T Consensus 18 v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n 96 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVAN 96 (369)
T ss_dssp EEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEE
T ss_pred EEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEe
Confidence 67889 788899999887777 778899999999999999999999999999999998764 467899999999888775
Q ss_pred -CCCeEEEEeCCCCcceEEEecc-------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeE--ec--cCCcee
Q 041916 80 -SGGTVTMWKPTTAAPLIKMLCH-------QGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQ--TL--PGHAKT 146 (359)
Q Consensus 80 -~dg~v~lwd~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~--~~--~~~i~~ 146 (359)
.++.+.++|..+.+++..+... .+.+.+|..+|....++..-. .+.|.+.|......+. .+ ......
T Consensus 97 ~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 97 YEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHD 176 (369)
T ss_dssp EETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEE
T ss_pred cCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccc
Confidence 6899999999999988887632 346778888898886655554 4889888987754332 22 345788
Q ss_pred EEEcCCc--eEEEE-cCCcEEEEcCCCC
Q 041916 147 LDFSQKG--LLAVG-TGSFVQILGDFSG 171 (359)
Q Consensus 147 ~~~s~~g--l~~~~-~d~~i~i~d~~~~ 171 (359)
..|+|++ ++++. ..+.|-++|..++
T Consensus 177 ~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred cccCcccceeeecccccceeEEEeeccc
Confidence 9999999 44443 4579999997665
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=3.8e-11 Score=111.73 Aligned_cols=160 Identities=15% Similarity=0.132 Sum_probs=113.4
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCE
Q 041916 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL 116 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (359)
..|.++|.. |.....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+.+.+|+|||+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCCE
Confidence 478999985 4445667778889999999999998887763 46899999988765 345556777889999999998
Q ss_pred EE-EEeCCC--eEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEc-C--CcEEEEcCCCCCCccceeecccCCCC
Q 041916 117 MA-TSGKEC--KIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGT-G--SFVQILGDFSGSHNYSRYMGHSMVKG 186 (359)
Q Consensus 117 l~-~~~~d~--~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~ 186 (359)
|+ +.+.++ .|++||+.++...... .+.....+|+|+| ++.++. + ..|++||+..+ . ...+..+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~--- 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS-N-PRRISFGGG--- 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC-C-eEEeecCCC---
Confidence 75 445555 4888899887654332 3345789999999 444442 2 36888886443 2 233332222
Q ss_pred cceEEEEEeeCCCEEEEEcCC
Q 041916 187 YQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 187 ~~v~~~~~~p~~~~l~~~~~d 207 (359)
.+..+.|+|+|+.|+..+.+
T Consensus 335 -~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 335 -RYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred -cccCeEECCCCCEEEEEEcC
Confidence 46678999999999876643
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.2e-10 Score=104.25 Aligned_cols=210 Identities=14% Similarity=0.178 Sum_probs=136.6
Q ss_pred eEEEeCC--CcEEEEeccCCCeEEEEEecC--CCEEEE-----EecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEc
Q 041916 2 PYIYNRD--GTELHCLKEHGAVLKLQFLRN--HFLLAS-----INKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVN 69 (359)
Q Consensus 2 v~iwd~~--g~~~~~l~~h~~~~~l~~s~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s 69 (359)
|++|+.. ....+.|. -.+++.+++||. ...+|+ .|.-+.|+||.+.....-..+ .-....-..+.|+
T Consensus 148 v~f~~~~~f~~~~~kl~-~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN 226 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQHKLS-VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWN 226 (566)
T ss_pred EEEEecCCccceeeeee-ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEec
Confidence 5677722 22333333 234577788875 345554 455678999998632211111 0011223468898
Q ss_pred CCCC-EEEEEe--CC---------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCce
Q 041916 70 PFNG-VVSLGH--SG---------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--KECKIKIWDLRKYE 135 (359)
Q Consensus 70 p~~~-~l~sg~--~d---------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~ 135 (359)
+-|. +|+.++ -| .++++.++........+ ...++|.++.|+|+|+-++++- .-..+.+||++ +.
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~ 304 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GK 304 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CC
Confidence 8775 333333 22 36888887743444443 3479999999999998876654 45689999998 57
Q ss_pred eeEec-cCCceeEEEcCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 136 VLQTL-PGHAKTLDFSQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 136 ~~~~~-~~~i~~~~~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
++..+ +++-+++-|+|.| ++.+|.+ |.|.|||..+ .+.+..+... .-+-+.|+|||.++++++..-.
T Consensus 305 ~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K~i~~~~a~------~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 305 PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN-RKLIAKFKAA------NTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc-hhhccccccC------CceEEEEcCCCcEEEEEecccc
Confidence 88888 7788999999999 5566654 8999999776 3566655544 4566899999999999887643
Q ss_pred EEEEEcCCCCCccccccC
Q 041916 210 SSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 210 ~~i~~~~~~d~~~~~~~~ 227 (359)
.++ |+.++||++
T Consensus 378 lrv------dNg~Kiwhy 389 (566)
T KOG2315|consen 378 LRV------DNGIKIWHY 389 (566)
T ss_pred EEe------cCCeEEEEe
Confidence 332 445555554
No 242
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=4.4e-11 Score=110.50 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=116.3
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-----CCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCC
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-----FGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~ 72 (359)
|++.+..+.....+....+. ...+|||||+.|+..+. +..+.+|++..+ ........+.+.....+|+|||
T Consensus 213 I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 213 IFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred EEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 45556222223333333343 67899999988876553 223445777653 3333333333445678999999
Q ss_pred CEEEEEe-CCCeEEEE--eCCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEec--cCC
Q 041916 73 GVVSLGH-SGGTVTMW--KPTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQTL--PGH 143 (359)
Q Consensus 73 ~~l~sg~-~dg~v~lw--d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~--~~~ 143 (359)
..|+..+ .+|...+| ++.. +.....+..+...+....|+|||+.|+..+.+ ..|.+||+.+++..... ...
T Consensus 293 ~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~ 372 (428)
T PRK01029 293 TRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPEN 372 (428)
T ss_pred CEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCC
Confidence 9777665 46655555 4432 23344454455667889999999998877643 47999999988654333 235
Q ss_pred ceeEEEcCCc--eEEEE-c--CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916 144 AKTLDFSQKG--LLAVG-T--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~-~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
+..+.|+|+| ++..+ . ...|+++|+..+ .. ..+....+ .+...+|+|..
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g-~~-~~Lt~~~g----~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITK-KT-RKIVIGSG----EKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCC-CE-EEeecCCC----cccCceecCCC
Confidence 6789999999 43333 2 357888887554 22 22322222 46677888754
No 243
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=9e-10 Score=97.42 Aligned_cols=210 Identities=14% Similarity=0.124 Sum_probs=141.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec----------CCeEEEEECCCCeEEEEEecCCC-------C
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK----------FGQLRYQDVTMGEIVGNFRTGLG-------R 62 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~~-------~ 62 (359)
.|++.| .+++.+.++.....+..+ +|||++.|+++.. +..|.+||+.+++.+..+..... .
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 367888 777888888877777656 9999988877665 78999999999999988875322 2
Q ss_pred eEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCcceEEEecc------------------CC-------------CeEEE-
Q 041916 63 TDVMRVNPFNGVVSLGH-S-GGTVTMWKPTTAAPLIKMLCH------------------QG-------------PVSAL- 108 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~-~-dg~v~lwd~~~~~~~~~~~~h------------------~~-------------~v~~i- 108 (359)
...++++|||++|++.. . +..|.+.|+.+++.+..+... .+ .+...
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 34789999999888766 3 688999999877655433210 00 01111
Q ss_pred -------------EEcC-CCCEEEEEeCCCeEEEEEcCCc-----eeeEec----------cCCceeEEEcCCc--eEEE
Q 041916 109 -------------AFHP-NGHLMATSGKECKIKIWDLRKY-----EVLQTL----------PGHAKTLDFSQKG--LLAV 157 (359)
Q Consensus 109 -------------~~~~-~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~----------~~~i~~~~~s~~g--l~~~ 157 (359)
.|.+ +|.++++... |+|.+.|+... .....+ ++...-++++|+| +++.
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~ 265 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL 265 (352)
T ss_pred eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence 1223 7777766665 99999996442 233222 1223459999998 4443
Q ss_pred E----------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEc-CCCeEEEEEcCCC
Q 041916 158 G----------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSSILVPGSG 218 (359)
Q Consensus 158 ~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~~~i~~~~~~ 218 (359)
. ..+.|.++|..+.........++ .+..++++||++ .|++.. .++.++++...+.
T Consensus 266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred ecCCccccccCCCCEEEEEECCCCeEEEEEeCCC------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 2 22589999987763333333344 799999999999 776655 4566666665443
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=3.2e-11 Score=99.82 Aligned_cols=183 Identities=14% Similarity=0.092 Sum_probs=131.5
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCc-ceEE
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAA-PLIK 97 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~-~~~~ 97 (359)
.++.|++.+..++++..+|.+.+-+...... ++.++.|.-+++...|+... +++.+|+.||.+..||++... .+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 6788899888899999999998666555543 34788999999999998644 789999999999999999433 3332
Q ss_pred -EeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-ceeeEec--cCCceeEEEcCCc---eEEEEcCCcEEEEcCC
Q 041916 98 -MLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-YEVLQTL--PGHAKTLDFSQKG---LLAVGTGSFVQILGDF 169 (359)
Q Consensus 98 -~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~ 169 (359)
...|...|.+|.-+| .+.+|+||+.|-.|++||.|+ ++++..- .|.|..+.++|.- +++++.-+-.+|-+..
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~ 284 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS 284 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence 446888899998887 688999999999999999994 7787655 5789999999965 5666665556666644
Q ss_pred CCCCcc-ceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 170 SGSHNY-SRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 170 ~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.+.... ..+..+.. +.+-+..-.|.....+|++++
T Consensus 285 ~~~~e~~~~~~s~~~-hdSl~YG~DWd~~~~~lATCs 320 (339)
T KOG0280|consen 285 DKVLEFQIVLPSDKI-HDSLCYGGDWDSKDSFLATCS 320 (339)
T ss_pred ccccchheeeecccc-ccceeeccccccccceeeeee
Confidence 432221 12333332 333455555544345566644
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=2.6e-11 Score=115.57 Aligned_cols=176 Identities=16% Similarity=0.266 Sum_probs=137.4
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCC----CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLG----RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV 105 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v 105 (359)
...++.+..+..+.+||...+..+..+....- +..-+.++++.-++++|+.-+.|.+|++...+....+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 45677777788999999987776665553221 22234456777899999999999999988444444678999999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE--ec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ--TL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGH 181 (359)
Q Consensus 106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~ 181 (359)
.++.|+-||++++++|.|.++++|++.+.+... .| ++.+..++|+|..+++++.|-++++|+ ..+ ..+..|..|
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~-~~~-~~l~~y~~h 256 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPNRIITVGEDCTCRVWG-VNG-TQLEVYDEH 256 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccceeEEeccceEEEEEe-ccc-ceehhhhhh
Confidence 999999999999999999999999999977654 22 567899999999899999999999996 333 566688888
Q ss_pred cCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 182 SMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 182 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
.+..++.++..++...+++++.||.+
T Consensus 257 ---~g~~iw~~~~~~~~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 257 ---SGKGIWKIAVPIGVIIKVTGGNDSTL 282 (967)
T ss_pred ---hhcceeEEEEcCCceEEEeeccCcch
Confidence 34579999999988666665555543
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.36 E-value=2e-11 Score=116.36 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=131.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe--E---EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV--L---KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~--~---~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
+.||| ..+..+..+.....+ . -+-++++.-++++|+.-+.|.+|+....+....+.+|.+.|..+.|+-||.++
T Consensus 111 ~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i 190 (967)
T KOG0974|consen 111 LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYI 190 (967)
T ss_pred EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEE
Confidence 45677 445554444443332 2 22345667789999999999999998444444688999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcceE-EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLI-KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFS 150 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s 150 (359)
++.|.|.++++|++.+.+... ..-+|+..|..+.|+|. .++|++.|.+.++|+... ..+..+ ...+..++..
T Consensus 191 ~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~~l~~y~~h~g~~iw~~~~~ 267 (967)
T KOG0974|consen 191 ASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-TQLEVYDEHSGKGIWKIAVP 267 (967)
T ss_pred EEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-ceehhhhhhhhcceeEEEEc
Confidence 999999999999999887655 55689999999999998 999999999999996653 333344 3468888988
Q ss_pred CCc--eEEEEcCCcEEEEcCCC
Q 041916 151 QKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 151 ~~g--l~~~~~d~~i~i~d~~~ 170 (359)
++. .++++.|+.+++|++..
T Consensus 268 ~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 268 IGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred CCceEEEeeccCcchhhhhhhc
Confidence 888 78889999999999654
No 247
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.9e-12 Score=110.66 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=158.8
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCC--CEEEEEeCCCeEEEEe
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFN--GVVSLGHSGGTVTMWK 88 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~--~~l~sg~~dg~v~lwd 88 (359)
..|..|.+. +.+.|+..|..|++|+.|..|.+||...+.....+. +|...|..-.|-|.. ..+++++.||.|++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 557789997 999999999999999999999999999988776665 687888888888853 6799999999999877
Q ss_pred CCCCc-c--eEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEec------cC---CceeEEEcCCc--
Q 041916 89 PTTAA-P--LIKMLCHQGPVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTL------PG---HAKTLDFSQKG-- 153 (359)
Q Consensus 89 ~~~~~-~--~~~~~~h~~~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~------~~---~i~~~~~s~~g-- 153 (359)
+.... . ...+..|.++|.-++.-|+..+ |++++.|+.+.-+|++...+...+ .. ....++..|..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 54332 2 3345579999999999996655 999999999999999987664444 11 34788888876
Q ss_pred -eEEEEcCCcEEEEcCCCCCC-----ccceeecccC--CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCC
Q 041916 154 -LLAVGTGSFVQILGDFSGSH-----NYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP 220 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~ 220 (359)
+.+++.|-.+++||.+.-.. .+..+..|.. .....|++++|+.++.-|.++..|-.+.+|...-++|
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 67788899999999654211 1222222211 0223699999998888888888888888886665665
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.7e-10 Score=107.47 Aligned_cols=187 Identities=10% Similarity=0.085 Sum_probs=116.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEE-EecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLAS-INKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|++|| .+|.. ..+....+. ...+|+|||+.|+. .+.+| .|.+||+.++... .+..+........|+|||..|+
T Consensus 225 l~~~~l~~g~~-~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~ 302 (430)
T PRK00178 225 IFVQNLDTGRR-EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLY 302 (430)
T ss_pred EEEEECCCCCE-EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEE
Confidence 67778 55544 333333343 67899999988764 44444 6888999887643 4555555667789999998777
Q ss_pred EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEec-cCCceeEEE
Q 041916 77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTL-PGHAKTLDF 149 (359)
Q Consensus 77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~-~~~i~~~~~ 149 (359)
..+. +| .|+++|+.+++... +...........|+|||++|+..+.+ + .|.+||+.++...... ........|
T Consensus 303 f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~ 381 (430)
T PRK00178 303 FTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSV 381 (430)
T ss_pred EEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCceE
Confidence 6553 33 57778887776432 22222234467899999999877653 2 5889999887543222 223346789
Q ss_pred cCCc--eEEEE-cC--CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 150 SQKG--LLAVG-TG--SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 150 s~~g--l~~~~-~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
+|+| ++..+ .+ ..|.++++. + .....+..+.+ .+...+|+|.
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~-g-~~~~~l~~~~g----~~~~p~ws~~ 428 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSIN-G-RVRLPLPTAQG----EVREPSWSPY 428 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECC-C-CceEECcCCCC----CcCCCccCCC
Confidence 9999 33333 33 356677653 2 23333333322 5666777763
No 249
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.2e-10 Score=101.47 Aligned_cols=215 Identities=10% Similarity=0.112 Sum_probs=137.6
Q ss_pred eEEEe-CCCcEEEEeccCCC---e-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGA---V-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~---~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+.||| .+|.....|....+ . .-+.||.|++++|--..+ +|.||+..+..++..-.-....|....|+|.+++||
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 78999 99999887776332 3 567999999999887665 799999776443322222345677777888776666
Q ss_pred EEeC--C---CeEEEEe----------------------------------------------------CCCCcceEEEe
Q 041916 77 LGHS--G---GTVTMWK----------------------------------------------------PTTAAPLIKML 99 (359)
Q Consensus 77 sg~~--d---g~v~lwd----------------------------------------------------~~~~~~~~~~~ 99 (359)
.=.. + ..+.|.. ++.........
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 4211 0 0111111 11111000001
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCC----ceeeEec-cCCceeEEEcCCc-e-EEE---EcCCcEEEE
Q 041916 100 CHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRK----YEVLQTL-PGHAKTLDFSQKG-L-LAV---GTGSFVQIL 166 (359)
Q Consensus 100 ~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~----~~~~~~~-~~~i~~~~~s~~g-l-~~~---~~d~~i~i~ 166 (359)
.-...|...+|.|.|+.+++-+.. .++.+|-+.+ .+.+..+ ....+.+.|+|.| + +++ |..|.+.++
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 124467889999999988776543 4788888773 2344555 4567999999999 3 332 357899999
Q ss_pred cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccCC
Q 041916 167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~~ 228 (359)
|+............|. ..+.+.|.|.|+|++++++.+ ...-|..+++|+..
T Consensus 523 D~~~a~~k~~~~~eh~-----~at~veWDPtGRYvvT~ss~w------rhk~d~GYri~tfq 573 (698)
T KOG2314|consen 523 DTDYADLKDTASPEHF-----AATEVEWDPTGRYVVTSSSSW------RHKVDNGYRIFTFQ 573 (698)
T ss_pred ecchhhhhhccCcccc-----ccccceECCCCCEEEEeeehh------hhccccceEEEEee
Confidence 9764322233334443 478899999999999987754 34457778888764
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=6.4e-09 Score=93.79 Aligned_cols=196 Identities=14% Similarity=0.123 Sum_probs=125.4
Q ss_pred CCeEEEEEecCCCEEEEEec-CCeEEEEECCC-CeEEEE---Ee----------cCCCCeEEEEEcCCCCEEEEEe-CCC
Q 041916 19 GAVLKLQFLRNHFLLASINK-FGQLRYQDVTM-GEIVGN---FR----------TGLGRTDVMRVNPFNGVVSLGH-SGG 82 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~~~~~---~~----------~~~~~v~~~~~sp~~~~l~sg~-~dg 82 (359)
..+..++++|++.+|+++.. +|.|.++++.. |..... +. .....++++.|+|+++++++.. ...
T Consensus 87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 34588999999999988864 89999999987 443322 21 1124578999999999877754 344
Q ss_pred eEEEEeCCCCcc-e---EEEe-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC--Cce--eeEec---c----C--C
Q 041916 83 TVTMWKPTTAAP-L---IKML-CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLR--KYE--VLQTL---P----G--H 143 (359)
Q Consensus 83 ~v~lwd~~~~~~-~---~~~~-~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~--~~~--~~~~~---~----~--~ 143 (359)
.|.+|++..... + ..+. .....-+.++|+|+++++++.+ .+++|.+|++. ++. .+..+ + + .
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 799999876541 2 2222 2223468899999999987765 47789999998 442 22222 1 1 4
Q ss_pred ceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC-CeEEEEEc
Q 041916 144 AKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM-GWSSILVP 215 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d-g~~~i~~~ 215 (359)
...|.++|+| ++++. ..+.|.+|++......+........ .+.....++++|+|++|+++..+ +.+.+|..
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 6789999999 44444 4579999997432222322222111 23358999999999998877644 45555543
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.9e-10 Score=105.91 Aligned_cols=187 Identities=10% Similarity=0.103 Sum_probs=115.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEE-EecCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLAS-INKFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|++|| .+|+. ..+....+. ...+|+|||+.|+. .+.+| .|.++|+.+++. ..+..+.......+|+|||+.|+
T Consensus 244 L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~ 321 (448)
T PRK04792 244 IFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLI 321 (448)
T ss_pred EEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEE
Confidence 67788 55543 333333333 67899999987765 45555 488889887764 34444555667889999998877
Q ss_pred EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCceeeEeccC-CceeEEE
Q 041916 77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-C--KIKIWDLRKYEVLQTLPG-HAKTLDF 149 (359)
Q Consensus 77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~--~i~iwd~~~~~~~~~~~~-~i~~~~~ 149 (359)
..+. +| .|.++|+.+++... +..........+|+|||++|+..+.+ + .|.++|+.++........ ......|
T Consensus 322 f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~ 400 (448)
T PRK04792 322 FTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESPSV 400 (448)
T ss_pred EEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCceE
Confidence 6553 33 46677877765432 22222233457999999998876653 3 566678887764322222 2345689
Q ss_pred cCCc--eE-EEEcCC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 150 SQKG--LL-AVGTGS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 150 s~~g--l~-~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
+|+| ++ +...++ .+++++. ++ .....+..+.. .+...+|+|.
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~-~G-~~~~~l~~~~g----~~~~p~Wsp~ 447 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSI-DG-RFKARLPAGQG----EVKSPAWSPF 447 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEEC-CC-CceEECcCCCC----CcCCCccCCC
Confidence 9999 33 333444 4677774 33 33444433322 5677788773
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=3.4e-10 Score=105.11 Aligned_cols=163 Identities=17% Similarity=0.229 Sum_probs=110.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEE-EecC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLAS-INKF--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s-~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|++|| .+|.... +..+.+. .+++|+|||+.|+. .+.+ ..|.+||+.++.. ..+..+........|+|+|..|+
T Consensus 216 i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 216 IYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred EEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEE
Confidence 67888 5665433 3344444 77999999987754 4443 3699999987754 34444555556789999999887
Q ss_pred EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeEec-cCCceeEEE
Q 041916 77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQTL-PGHAKTLDF 149 (359)
Q Consensus 77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~-~~~i~~~~~ 149 (359)
..+. +| .|++||+.+++. ..+..+...+..+.|+|+|++|+.++.++ .|.+||+.++...... ........|
T Consensus 294 ~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~ 372 (417)
T TIGR02800 294 FTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSF 372 (417)
T ss_pred EEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceE
Confidence 6654 33 588888876653 34444556677899999999999888776 8999999875432222 234566789
Q ss_pred cCCc--eEEEEcC---CcEEEEc
Q 041916 150 SQKG--LLAVGTG---SFVQILG 167 (359)
Q Consensus 150 s~~g--l~~~~~d---~~i~i~d 167 (359)
+|+| ++.++.+ ..+.+++
T Consensus 373 spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 373 APNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred CCCCCEEEEEEeCCCcEEEEEEE
Confidence 9999 4444433 2455555
No 253
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=5.6e-11 Score=104.63 Aligned_cols=211 Identities=18% Similarity=0.254 Sum_probs=154.3
Q ss_pred eEEEe-CCCcEEEEec-cCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe-E--EEEEecCCCCeEEEEEcCCC-
Q 041916 2 PYIYN-RDGTELHCLK-EHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE-I--VGNFRTGLGRTDVMRVNPFN- 72 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~-~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~~~~~v~~~~~sp~~- 72 (359)
|.+|| ..+.....+. +|..- ..-.|-|. ...+++++.||.|++=.+.... + ...+..|.++|+-++.-|+.
T Consensus 166 vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp 245 (559)
T KOG1334|consen 166 VVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP 245 (559)
T ss_pred EEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCC
Confidence 67899 7777655554 56553 55567774 4679999999999988775432 2 34456799999999999976
Q ss_pred CEEEEEeCCCeEEEEeCCCCcceEEEe---ccCC---CeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce------eeEe
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAPLIKML---CHQG---PVSALAFHPNGH-LMATSGKECKIKIWDLRKYE------VLQT 139 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~---~h~~---~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~------~~~~ 139 (359)
..|.+++.|+.|.-+|+++..+...+. .+.. ...+|+.+|... .+++++.|-.+++||.+... ++..
T Consensus 246 ~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~ 325 (559)
T KOG1334|consen 246 KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDK 325 (559)
T ss_pred CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhh
Confidence 568899999999999999887655443 2333 567899999655 79999999999999998632 2233
Q ss_pred c---------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC------------CccceeecccCCCCcceEEEEE-e
Q 041916 140 L---------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS------------HNYSRYMGHSMVKGYQIGKVSF-R 195 (359)
Q Consensus 140 ~---------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~------------~~~~~~~~~~~~~~~~v~~~~~-~ 195 (359)
+ +..|++++|+.++ +++.-.|-.|++|.-..+. .....|.+|.. ...|-.+-| -
T Consensus 326 f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN--~~TVKgVNFfG 403 (559)
T KOG1334|consen 326 FCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRN--SRTVKGVNFFG 403 (559)
T ss_pred cCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccc--ccccceeeecc
Confidence 3 3468999999777 8888889999999633221 11234778863 334777765 6
Q ss_pred eCCCEEEEEcCCCeEEEEE
Q 041916 196 PYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 196 p~~~~l~~~~~dg~~~i~~ 214 (359)
|...|+++|+.-|.+.||.
T Consensus 404 PrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 404 PRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CccceEEecCccceEEEEe
Confidence 8889999999999777764
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=9.8e-10 Score=106.70 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=120.0
Q ss_pred CeEEEe-C--CCc-----EEEEec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC--e-----EEEEEecCC-CCe
Q 041916 1 YPYIYN-R--DGT-----ELHCLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG--E-----IVGNFRTGL-GRT 63 (359)
Q Consensus 1 ~v~iwd-~--~g~-----~~~~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~-----~~~~~~~~~-~~v 63 (359)
+|+||+ . .|. ...++. ..+.+.++...+.+..+|.++.||.|.+.++... . +......+. +.+
T Consensus 1072 tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~v 1151 (1431)
T KOG1240|consen 1072 TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVV 1151 (1431)
T ss_pred eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCce
Confidence 589999 2 122 123333 2233488888899999999999999999999762 1 112222222 333
Q ss_pred EEE-EEcC-CCC-EEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916 64 DVM-RVNP-FNG-VVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138 (359)
Q Consensus 64 ~~~-~~sp-~~~-~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 138 (359)
..| +|.. .+. .++.+...+.|..||+++...+..++ ...|.|++++.+|.++++++|+..|.+.+||+|-+.++.
T Consensus 1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence 333 3332 233 78888888999999998876555443 446889999999999999999999999999999988888
Q ss_pred ecc----CCceeEEEcCC---c--eEEEE--cCCcEEEEcCCCC
Q 041916 139 TLP----GHAKTLDFSQK---G--LLAVG--TGSFVQILGDFSG 171 (359)
Q Consensus 139 ~~~----~~i~~~~~s~~---g--l~~~~--~d~~i~i~d~~~~ 171 (359)
.+. .++..+..+|- . .++++ ..+.|.+|++.++
T Consensus 1232 sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1232 SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 872 35666665552 2 44444 4578999998877
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.26 E-value=1.6e-08 Score=86.57 Aligned_cols=205 Identities=16% Similarity=0.226 Sum_probs=136.2
Q ss_pred eEEEe---CCCcE--EEEeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCC--CeE--EEEEecCCCCeEEEEEc
Q 041916 2 PYIYN---RDGTE--LHCLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTM--GEI--VGNFRTGLGRTDVMRVN 69 (359)
Q Consensus 2 v~iwd---~~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~--~~~--~~~~~~~~~~v~~~~~s 69 (359)
|++|+ .+|+. +..+..-..++-|+|+|+.++|+++.. +|.|.-|.++. |.. +........+.+.++++
T Consensus 18 I~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd 97 (346)
T COG2706 18 IYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVD 97 (346)
T ss_pred eEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEEC
Confidence 56666 33432 233334445689999999999988765 47777777764 542 22222333455889999
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCC-Ccc--eEEEeccCCC----------eEEEEEcCCCCEEEEEeC-CCeEEEEEcCCc
Q 041916 70 PFNGVVSLGH-SGGTVTMWKPTT-AAP--LIKMLCHQGP----------VSALAFHPNGHLMATSGK-ECKIKIWDLRKY 134 (359)
Q Consensus 70 p~~~~l~sg~-~dg~v~lwd~~~-~~~--~~~~~~h~~~----------v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~ 134 (359)
++|++++++. ..|.|.++-++. |.+ ...+..|.+. +.+..+.|++++|+++.. -..|.+|++..+
T Consensus 98 ~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg 177 (346)
T COG2706 98 EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDG 177 (346)
T ss_pred CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccC
Confidence 9999988876 457899998865 432 2223356555 889999999999988763 237999999977
Q ss_pred eeeEec------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeeccc-----CCCCcceEEEEEeeCCCE
Q 041916 135 EVLQTL------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHS-----MVKGYQIGKVSFRPYEDV 200 (359)
Q Consensus 135 ~~~~~~------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~ 200 (359)
.....- ......|.|+|+| ++++--+++|.+|........+..+..+. ........+|..+|+|++
T Consensus 178 ~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrF 257 (346)
T COG2706 178 KLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRF 257 (346)
T ss_pred ccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCE
Confidence 643222 2357999999999 45555789999998655322222222211 111235778999999999
Q ss_pred EEEEcC
Q 041916 201 LGIGHS 206 (359)
Q Consensus 201 l~~~~~ 206 (359)
|.++..
T Consensus 258 LYasNR 263 (346)
T COG2706 258 LYASNR 263 (346)
T ss_pred EEEecC
Confidence 877654
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.6e-09 Score=96.41 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=133.0
Q ss_pred CeEEEe-CCCcEEEEeccC---CCe-EEEEEe------c--------------CCCEEEEEecCCeEEEEECCCCeEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEH---GAV-LKLQFL------R--------------NHFLLASINKFGQLRYQDVTMGEIVGN 55 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h---~~~-~~l~~s------~--------------~~~~l~s~~~dg~i~iwd~~~~~~~~~ 55 (359)
+++||| ..++.-..|... .+. ++..|. | +...++-|...|.|.+|++..|+....
T Consensus 16 ~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~ 95 (541)
T KOG4547|consen 16 RLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAK 95 (541)
T ss_pred eEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEE
Confidence 579999 666665555432 122 444442 2 234567778889999999999998887
Q ss_pred Ee--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916 56 FR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 56 ~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
+. .|.++|+++.++.+-..|.+++.|+.+..|++.....+..+.+.+..+.+++.+|||..+++++ ++|++||+.+
T Consensus 96 ~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ 173 (541)
T KOG4547|consen 96 LSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIET 173 (541)
T ss_pred EecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence 76 5889999999999989999999999999999999999999998889999999999999999987 6899999999
Q ss_pred ceeeEeccC---CceeEEEcCC-----c--eEEE-EcCCcEEEEcCCC
Q 041916 134 YEVLQTLPG---HAKTLDFSQK-----G--LLAV-GTGSFVQILGDFS 170 (359)
Q Consensus 134 ~~~~~~~~~---~i~~~~~s~~-----g--l~~~-~~d~~i~i~d~~~ 170 (359)
.+.+..|++ +|++++|.-+ | ++++ ..+..+.+|-...
T Consensus 174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999999954 6788888765 4 3332 3446777776443
No 257
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.25 E-value=1.1e-08 Score=87.61 Aligned_cols=193 Identities=16% Similarity=0.135 Sum_probs=136.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCe---EEEEEecCCCEEEEEec-----CCeEEEEECC-CCeEEEEEecCCCCeEEEEEcC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV---LKLQFLRNHFLLASINK-----FGQLRYQDVT-MGEIVGNFRTGLGRTDVMRVNP 70 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~---~~l~~s~~~~~l~s~~~-----dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp 70 (359)
+..+|| .+|.....+....+- -...|||||++|++.-+ .|.|-|||.. +-..+.++..|.-..+.+.+.|
T Consensus 29 ~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 29 FALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC
Confidence 357899 889988888765553 35689999999998644 5899999998 6678889998887889999999
Q ss_pred CCCEEEEEe------------------CCCeEEEEeCCCCcceEEEe----ccCCCeEEEEEcCCCCEEEEEeCCC----
Q 041916 71 FNGVVSLGH------------------SGGTVTMWKPTTAAPLIKML----CHQGPVSALAFHPNGHLMATSGKEC---- 124 (359)
Q Consensus 71 ~~~~l~sg~------------------~dg~v~lwd~~~~~~~~~~~----~h~~~v~~i~~~~~~~~l~~~~~d~---- 124 (359)
||..|+++. .+.++.+.|..+|+.+.... -|.-.|+.++++++|..++..-..|
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 997777753 23456667778888776633 3777899999999998776655443
Q ss_pred ---eEEEEEcCCceeeE----------eccCCceeEEEcCCc-eEEEE--cCCcEEEEcCCCCCCccceeecccCCCCcc
Q 041916 125 ---KIKIWDLRKYEVLQ----------TLPGHAKTLDFSQKG-LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMVKGYQ 188 (359)
Q Consensus 125 ---~i~iwd~~~~~~~~----------~~~~~i~~~~~s~~g-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 188 (359)
.|.+++... .+. .+.+.+-+|+++++| +++++ ..+.+.+||..++ ..+....-. .
T Consensus 189 ~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg-~~~~~~~l~------D 259 (305)
T PF07433_consen 189 APPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG-RLLGSVPLP------D 259 (305)
T ss_pred cCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC-CEeeccccC------c
Confidence 244444332 222 225678999999999 55444 5789999997776 333333222 4
Q ss_pred eEEEEEeeCCCEEEE
Q 041916 189 IGKVSFRPYEDVLGI 203 (359)
Q Consensus 189 v~~~~~~p~~~~l~~ 203 (359)
+..++-.+++ ++++
T Consensus 260 ~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 260 ACGVAPTDDG-FLVS 273 (305)
T ss_pred eeeeeecCCc-eEEe
Confidence 6677766666 4443
No 258
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=2.1e-11 Score=102.93 Aligned_cols=167 Identities=19% Similarity=0.240 Sum_probs=124.3
Q ss_pred EEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----cceEE
Q 041916 25 QFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-----APLIK 97 (359)
Q Consensus 25 ~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-----~~~~~ 97 (359)
+|+-+ +.. ++.+.+-.|-+-|+.+|-. ..|. ..+.|.++.|...+++++.|+.+|.|..+|++.+ .+...
T Consensus 218 awSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceee-ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 66543 344 5555677888999987743 3444 5577999999998999999999999999999865 23343
Q ss_pred EeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCcee---eEeccCCceeEEEcCC------c-eEEEEcCCcEEEE
Q 041916 98 MLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEV---LQTLPGHAKTLDFSQK------G-LLAVGTGSFVQIL 166 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~i~~~~~s~~------g-l~~~~~d~~i~i~ 166 (359)
+ -|.+.|+++..-. ++.+|++.+.+|+|++||+|.-++ +.++.++++..+..|- | ++++|.|-..+||
T Consensus 295 l-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 L-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred E-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 3 5889999988776 788999999999999999998777 8888999987776653 3 8888999999999
Q ss_pred cCCCCCCccceeecccCCCCcceEEEEEee
Q 041916 167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRP 196 (359)
Q Consensus 167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 196 (359)
.+..+ ..+..+..........+.+++|..
T Consensus 374 sl~~g-hLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 374 SLDSG-HLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred ecccC-ceeeccCCCCccccccccceehhc
Confidence 98766 444443322211222466666653
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=2.7e-08 Score=89.74 Aligned_cols=215 Identities=13% Similarity=0.174 Sum_probs=133.9
Q ss_pred CCCcE--EEEeccCCCeEEEEEecCCCEEEEEec----CCeEEEEECCCC--e--EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 7 RDGTE--LHCLKEHGAVLKLQFLRNHFLLASINK----FGQLRYQDVTMG--E--IVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 7 ~~g~~--~~~l~~h~~~~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~--~--~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
.+|+. +..+.....+..++++|++.+|+++.. ++.|..|++... . .+............++++|++.+|+
T Consensus 23 ~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~ 102 (345)
T PF10282_consen 23 ETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLY 102 (345)
T ss_dssp TTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEE
T ss_pred CCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEE
Confidence 44443 334445556688999999999988876 579999998764 3 3444443445566799999999988
Q ss_pred EEe-CCCeEEEEeCCC-CcceEE--Eecc-----------CCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCce--e--
Q 041916 77 LGH-SGGTVTMWKPTT-AAPLIK--MLCH-----------QGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYE--V-- 136 (359)
Q Consensus 77 sg~-~dg~v~lwd~~~-~~~~~~--~~~h-----------~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~--~-- 136 (359)
++. .+|.|.++++.. +..... ...| .....++.|+|+|++++++.. ...|.+|++.... .
T Consensus 103 vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~ 182 (345)
T PF10282_consen 103 VANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP 182 (345)
T ss_dssp EEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE
T ss_pred EEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEE
Confidence 887 589999999986 332221 1111 234689999999999887653 4589999997654 2
Q ss_pred eEec----cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc---ceeecc--cCCCCcceEEEEEeeCCCEEEEE
Q 041916 137 LQTL----PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY---SRYMGH--SMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 137 ~~~~----~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~--~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
...+ ......++|+|+| ++++. .++.|.+|++....... +.+... ..........++++|+|++|.++
T Consensus 183 ~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvs 262 (345)
T PF10282_consen 183 VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVS 262 (345)
T ss_dssp EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEE
T ss_pred eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEE
Confidence 1222 2357899999999 44444 56899999876221111 111111 11011257889999999987765
Q ss_pred cC-CCeEEEEEcCCCCCc
Q 041916 205 HS-MGWSSILVPGSGEPN 221 (359)
Q Consensus 205 ~~-dg~~~i~~~~~~d~~ 221 (359)
.. .+.+.+|.....++.
T Consensus 263 nr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGT 280 (345)
T ss_dssp ECTTTEEEEEEECTTTTT
T ss_pred eccCCEEEEEEEecCCCc
Confidence 54 344555544333333
No 260
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.23 E-value=4.9e-10 Score=105.72 Aligned_cols=189 Identities=20% Similarity=0.263 Sum_probs=144.7
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA 109 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~ 109 (359)
+..++.|+....+..+|+.+++..+...-..+.|.-|+. +++++.+|...|+|.+-|+++.+.+.++.+|.+.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 445666777778889999988877766655555777765 568999999999999999999999999999999997665
Q ss_pred EcCCCCEEEEEeC---------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCC-Cc
Q 041916 110 FHPNGHLMATSGK---------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGS-HN 174 (359)
Q Consensus 110 ~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~-~~ 174 (359)
. .|+.|++||. |..|++||+|+.+.+.-+ +....-+.|+|.- +++++..|...+.|..+-. ..
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 5 7899999984 567899999998766555 3334667788865 7788888999999954432 23
Q ss_pred cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccc
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSW 225 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~ 225 (359)
...+.-+. .++.+.++.++++++.|+.|..+|.+.+|. ....+.+.-+
T Consensus 303 ~~~~~v~p--~~s~i~~fDiSsn~~alafgd~~g~v~~wa-~~~~P~Fn~~ 350 (1118)
T KOG1275|consen 303 AGVKMVNP--NGSGISAFDISSNGDALAFGDHEGHVNLWA-DRPQPQFNEY 350 (1118)
T ss_pred cceeEEcc--CCCcceeEEecCCCceEEEecccCcEeeec-CCCCCccCCC
Confidence 44444443 344599999999999999999999999998 4444444433
No 261
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.23 E-value=2.4e-09 Score=88.86 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=133.6
Q ss_pred cCCCeEEEEEec---CCC-EEEEEecCCeEEEEECCCCeEEEEEecCC------CCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 17 EHGAVLKLQFLR---NHF-LLASINKFGQLRYQDVTMGEIVGNFRTGL------GRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 17 ~h~~~~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
.|.....|-|+. +|. .|+-+..+|.|.++..........+++-. ....++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 344457777764 344 56777788999999876554444443211 12457889999999999999999996
Q ss_pred EeCCCCc--ceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-ceeeEe----ccCCceeEEEcCCc---eE
Q 041916 87 WKPTTAA--PLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-YEVLQT----LPGHAKTLDFSQKG---LL 155 (359)
Q Consensus 87 wd~~~~~--~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~~~----~~~~i~~~~~s~~g---l~ 155 (359)
-+..... .+++++.|.-.++...|+. +.+.+++||.|+.+..||+|. ++.+.. ....|.+|.-+|.. ++
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEE
Confidence 6655443 3447889999999999986 567899999999999999993 333322 24568888888764 88
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC--CEEEEEcCCCe
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE--DVLGIGHSMGW 209 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~~~~~dg~ 209 (359)
+++.|..|++||.++..+++..-.. ++.|+.+.++|.- .+|+++-.+|.
T Consensus 228 TGsYDe~i~~~DtRnm~kPl~~~~v-----~GGVWRi~~~p~~~~~lL~~CMh~G~ 278 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRNMGKPLFKAKV-----GGGVWRIKHHPEIFHRLLAACMHNGA 278 (339)
T ss_pred EeccccceeeeehhcccCccccCcc-----ccceEEEEecchhhhHHHHHHHhcCc
Confidence 8999999999998865555443322 2369999999964 34555555553
No 262
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=1.9e-08 Score=102.36 Aligned_cols=214 Identities=12% Similarity=0.062 Sum_probs=140.0
Q ss_pred eEEEeCCCcEEEEecc-C--------------CCeEEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecC------
Q 041916 2 PYIYNRDGTELHCLKE-H--------------GAVLKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTG------ 59 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~-h--------------~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~------ 59 (359)
|++||.+|..+..+.. . ..+..++++++++.|+++.. +..|+++|+.++. +.++.+.
T Consensus 592 I~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~ 670 (1057)
T PLN02919 592 IVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSD 670 (1057)
T ss_pred EEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCC
Confidence 6678877776655543 1 12488999998887666544 5689999987765 3333210
Q ss_pred -----------CCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEEec---------c------CCCeEEEEEcC
Q 041916 60 -----------LGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTAAPLIKMLC---------H------QGPVSALAFHP 112 (359)
Q Consensus 60 -----------~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~---------h------~~~v~~i~~~~ 112 (359)
......++|+| ++.++++.+.++.|.+||..++... .+.+ + -...+.|+|+|
T Consensus 671 ~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp 749 (1057)
T PLN02919 671 YQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP 749 (1057)
T ss_pred CCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC
Confidence 12346899999 5566777778899999998766432 2211 0 12346799999
Q ss_pred CCCEEE-EEeCCCeEEEEEcCCceeeE-------------ec-----------cCCceeEEEcCCc-e-EEEEcCCcEEE
Q 041916 113 NGHLMA-TSGKECKIKIWDLRKYEVLQ-------------TL-----------PGHAKTLDFSQKG-L-LAVGTGSFVQI 165 (359)
Q Consensus 113 ~~~~l~-~~~~d~~i~iwd~~~~~~~~-------------~~-----------~~~i~~~~~s~~g-l-~~~~~d~~i~i 165 (359)
+|.+|+ +-+.++.|++||+.++.... .+ -.....++++++| + ++-+.++.|++
T Consensus 750 dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 750 DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 998655 44567899999998754211 01 0134689999999 4 44456789999
Q ss_pred EcCCCCCCccceeecccC----------CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 166 LGDFSGSHNYSRYMGHSM----------VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 166 ~d~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
||..++ .+..+.+... ........++++++|+++++.+.++.+++|......
T Consensus 830 iD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 830 LDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 997554 2222222110 011246789999999988888888888888865544
No 263
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.18 E-value=1.7e-09 Score=91.61 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=124.8
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCC-e----EEEEEecCC------------CCeEEEEEcCCC--CEEEEEeCCC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMG-E----IVGNFRTGL------------GRTDVMRVNPFN--GVVSLGHSGG 82 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~----~~~~~~~~~------------~~v~~~~~sp~~--~~l~sg~~dg 82 (359)
.++.|..+|.+||||..+|.|.++.-... + ....++.|. ..|+.+.|.+++ ..++....|.
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 89999999999999999999999875432 1 334455553 357889998876 4577778999
Q ss_pred eEEEEeCCCCc--c---------------------------------eEEE-eccCCCeEEEEEcCCCCEEEEE------
Q 041916 83 TVTMWKPTTAA--P---------------------------------LIKM-LCHQGPVSALAFHPNGHLMATS------ 120 (359)
Q Consensus 83 ~v~lwd~~~~~--~---------------------------------~~~~-~~h~~~v~~i~~~~~~~~l~~~------ 120 (359)
+|++|-+.... . ...+ .+|.--|++|+++.|+..++++
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN 188 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN 188 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence 99999764211 0 0001 1355556666666666555554
Q ss_pred --------------------------------------------eCCCeEEEEEcCCceeeE----ec------------
Q 041916 121 --------------------------------------------GKECKIKIWDLRKYEVLQ----TL------------ 140 (359)
Q Consensus 121 --------------------------------------------~~d~~i~iwd~~~~~~~~----~~------------ 140 (359)
+..|+|++.|+|.....- .+
T Consensus 189 LWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsff 268 (433)
T KOG1354|consen 189 LWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFF 268 (433)
T ss_pred eccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhH
Confidence 556777777777432111 01
Q ss_pred ---cCCceeEEEcCCceEEEEcC-CcEEEEcCCCCCCccceeecccCCCC------------cceEEEEEeeCCCEEEEE
Q 041916 141 ---PGHAKTLDFSQKGLLAVGTG-SFVQILGDFSGSHNYSRYMGHSMVKG------------YQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 141 ---~~~i~~~~~s~~gl~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~p~~~~l~~~ 204 (359)
-..|..+.|+++|-+..+.| -+|++||+.....++..+..|.. -. ..-..++|+.++.++++|
T Consensus 269 seiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~-lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 269 SEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEY-LRSKLCSLYENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred HHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHh-HHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence 13578899999993334444 79999998776677777776642 10 012346777777777777
Q ss_pred cCCCeEEEEE
Q 041916 205 HSMGWSSILV 214 (359)
Q Consensus 205 ~~dg~~~i~~ 214 (359)
+.....+++.
T Consensus 348 sy~n~frvf~ 357 (433)
T KOG1354|consen 348 SYNNVFRVFN 357 (433)
T ss_pred cccceEEEec
Confidence 7776655554
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.17 E-value=4.3e-08 Score=84.01 Aligned_cols=184 Identities=11% Similarity=0.118 Sum_probs=128.8
Q ss_pred EEEEEecCCCEEEEEec-CCeEEEEECCC-CeEEE--EEecCCCC----------eEEEEEcCCCCEEEEEe--CCCeEE
Q 041916 22 LKLQFLRNHFLLASINK-FGQLRYQDVTM-GEIVG--NFRTGLGR----------TDVMRVNPFNGVVSLGH--SGGTVT 85 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~-dg~i~iwd~~~-~~~~~--~~~~~~~~----------v~~~~~sp~~~~l~sg~--~dg~v~ 85 (359)
+-+++++++++|++++. .|.|.++-+.. |.+.. ....|.++ +++..+.|++++|++.+ .| .|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEE
Confidence 88999999999988865 68999999965 43221 22235554 89999999999988765 34 589
Q ss_pred EEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCc----eeeEec---------cCCceeE
Q 041916 86 MWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKY----EVLQTL---------PGHAKTL 147 (359)
Q Consensus 86 lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~----~~~~~~---------~~~i~~~ 147 (359)
+|++..+.... .+... ..-+.|+|+|++++.++.+ .+++|-+|..... +.++.+ ......|
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 99998775322 22222 3357899999999987766 4899999998763 223332 1246889
Q ss_pred EEcCCc-eEEEEc--CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 148 DFSQKG-LLAVGT--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 148 ~~s~~g-l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
.++|+| ++-++. ...|.+|.+......+........ .+.....+.|+|.+++|++++.++
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~t-eg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPT-EGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEecc-CCcCCccceeCCCCCEEEEEccCC
Confidence 999999 555553 257888876554334443333322 344578999999999999988875
No 265
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=115.62 Aligned_cols=160 Identities=14% Similarity=0.312 Sum_probs=128.3
Q ss_pred eEEEe-CCCcEEEEeccC--CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEH--GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h--~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|++|. ..+..+.+++.- ..++.+.|+.+|+.+..+..||.|.+|.+. .++....+.|....+.+.|-. ..++++
T Consensus 2232 v~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~ta 2308 (2439)
T KOG1064|consen 2232 VRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATA 2308 (2439)
T ss_pred EEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhcc
Confidence 56777 667777766643 334899999999999999999999999987 677888889999999998865 556665
Q ss_pred e---CCCeEEEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc
Q 041916 79 H---SGGTVTMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG 153 (359)
Q Consensus 79 ~---~dg~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g 153 (359)
+ .++.+.+||..-. ..+.. .+|.+.++++++-|....|++||.+|.|++||++..+.++.++. +....
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------~~~~~ 2381 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------LDTRE 2381 (2439)
T ss_pred ccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------hhhhh
Confidence 3 6789999995432 22222 68999999999999999999999999999999999888888865 44333
Q ss_pred -eEEEEcCCcEEEEcCCCC
Q 041916 154 -LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~ 171 (359)
+++++..|.++||++..-
T Consensus 2382 ~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2382 YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eeeccCcccceEEEEcccc
Confidence 778888999999996543
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.13 E-value=4.9e-10 Score=112.31 Aligned_cols=150 Identities=22% Similarity=0.339 Sum_probs=124.9
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
..+.++.-+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+..|+.+..+..||.+.+|.+. .++...
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s 2287 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTS 2287 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceec
Confidence 3458888888888999999999999999999988877763 34789999999999999999999999999987 778888
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCC---ceeeEec-cCCceeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSG---KECKIKIWDLRK---YEVLQTL-PGHAKTLDFSQKG--LLAVGTGSFVQILGD 168 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~---~d~~i~iwd~~~---~~~~~~~-~~~i~~~~~s~~g--l~~~~~d~~i~i~d~ 168 (359)
.++|....+++.|-. ..+++++ .++.+.+||..- ..++++. .+.++++++.|.. +++||.+|.|++||+
T Consensus 2288 ~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~ 2365 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDI 2365 (2439)
T ss_pred cccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeeh
Confidence 899999888888865 5677765 468999999753 2345544 6789999999998 889999999999996
Q ss_pred CCC
Q 041916 169 FSG 171 (359)
Q Consensus 169 ~~~ 171 (359)
+..
T Consensus 2366 rqr 2368 (2439)
T KOG1064|consen 2366 RQR 2368 (2439)
T ss_pred HHH
Confidence 543
No 267
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=2.9e-08 Score=91.39 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=101.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEE-ec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASI-NK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~-~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
|+++| .+|+... +....+. ....|+|||..|+.. +. +..|.++|+.++.. ..+..+.+......|+|||+.|+
T Consensus 215 Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~ 292 (419)
T PRK04043 215 LYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIV 292 (419)
T ss_pred EEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEE
Confidence 67888 5555433 3334444 678899999766543 32 45788889887764 44544444345668999998777
Q ss_pred EEeC-CC--eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---------CeEEEEEcCCceeeEec-cCC
Q 041916 77 LGHS-GG--TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---------CKIKIWDLRKYEVLQTL-PGH 143 (359)
Q Consensus 77 sg~~-dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~-~~~ 143 (359)
..+. .| .|.++|+.+++....... +. ....|+|||++|+..+.. ..|.+.|+.++....-. .+.
T Consensus 293 F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~ 369 (419)
T PRK04043 293 FVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV 369 (419)
T ss_pred EEECCCCCceEEEEECCCCCeEeCccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC
Confidence 6653 33 588888887765332221 11 124899999998777643 36888898877643222 223
Q ss_pred ceeEEEcCCc--eEEEE-cCC--cEEEEcC
Q 041916 144 AKTLDFSQKG--LLAVG-TGS--FVQILGD 168 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~-~d~--~i~i~d~ 168 (359)
.....|+||| ++..+ ..+ .|.++++
T Consensus 370 ~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 370 NQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred cCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 4568999999 33333 223 4566664
No 268
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.1e-08 Score=92.01 Aligned_cols=167 Identities=16% Similarity=0.334 Sum_probs=117.2
Q ss_pred EEEEEecCCC-EEEEEec--C---------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE--EeCCCeEEEE
Q 041916 22 LKLQFLRNHF-LLASINK--F---------GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL--GHSGGTVTMW 87 (359)
Q Consensus 22 ~~l~~s~~~~-~l~s~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s--g~~dg~v~lw 87 (359)
..+.|++-|. +|+.++. | .++++.++....+...+. ..++|+++.|+|+++-+++ |-.=-.+.+|
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF 299 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence 5677877653 3333332 2 478888887434443343 4689999999999976554 4455679999
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceeeEeccC-CceeEEEcCCc--eEEEE---
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKG--LLAVG--- 158 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~-~i~~~~~s~~g--l~~~~--- 158 (359)
|++ +.++..+ ..++-+++-|+|.|++|+.+|- -|.|-+||+.+.+++..+.. ..+-+.|+||| +++++
T Consensus 300 nlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 300 NLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred cCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 987 4455444 5677889999999999998875 47899999999888888843 46778999999 66655
Q ss_pred ---cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916 159 ---TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 159 ---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
.|+.++||+. +|.......... .+..+.|-|...
T Consensus 377 RlrvdNg~Kiwhy-tG~~l~~~~f~s------EL~qv~W~P~~~ 413 (566)
T KOG2315|consen 377 RLRVDNGIKIWHY-TGSLLHEKMFKS------ELLQVEWRPFND 413 (566)
T ss_pred cEEecCCeEEEEe-cCceeehhhhhH------hHhheeeeecCC
Confidence 3688999994 552222211111 377888988653
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2.2e-08 Score=90.03 Aligned_cols=185 Identities=13% Similarity=0.145 Sum_probs=115.4
Q ss_pred CCCeEEEEEecCCCEEEEEec-----------CCeEEEEECCCCeEEEEEecCC--CCe-EEEEEcCCCCEEEEEeCCCe
Q 041916 18 HGAVLKLQFLRNHFLLASINK-----------FGQLRYQDVTMGEIVGNFRTGL--GRT-DVMRVNPFNGVVSLGHSGGT 83 (359)
Q Consensus 18 h~~~~~l~~s~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~--~~v-~~~~~sp~~~~l~sg~~dg~ 83 (359)
|.++.-+.|||+.+||+|-+. ...|+|||+.+|...+.|.... ..+ .-+.||.|+.++|.-..| +
T Consensus 249 Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-s 327 (698)
T KOG2314|consen 249 HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-S 327 (698)
T ss_pred CCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-e
Confidence 788888999999999999653 2579999999999888887632 222 346899999999987765 5
Q ss_pred EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEE--------------EEEc-------------
Q 041916 84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIK--------------IWDL------------- 131 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~--------------iwd~------------- 131 (359)
|.||+..+..++..-.-..+.|....|+|.++.||.=+.. ..+. ++++
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdy 407 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDY 407 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcE
Confidence 8898866533322211233456677777776666543211 0111 1111
Q ss_pred -------------------------CCce-eeE--eccCCceeEEEcCCc--eEEEEc---CCcEEEEcCCCCCCcccee
Q 041916 132 -------------------------RKYE-VLQ--TLPGHAKTLDFSQKG--LLAVGT---GSFVQILGDFSGSHNYSRY 178 (359)
Q Consensus 132 -------------------------~~~~-~~~--~~~~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~~~~~~~~ 178 (359)
+... ++. .+...|...+|-|.| +++.+. ..++.+|...+.......+
T Consensus 408 LcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 408 LCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 1100 000 113456788999999 443332 3689999876432222222
Q ss_pred ecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 179 MGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 179 ~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
... .....+.+.|+|.|++++++..
T Consensus 488 k~~---dk~~~N~vfwsPkG~fvvva~l 512 (698)
T KOG2314|consen 488 KEL---DKKFANTVFWSPKGRFVVVAAL 512 (698)
T ss_pred hhh---cccccceEEEcCCCcEEEEEEe
Confidence 211 1126889999999999987654
No 270
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.05 E-value=6.5e-07 Score=76.82 Aligned_cols=191 Identities=18% Similarity=0.206 Sum_probs=119.6
Q ss_pred eEEEeCCCcEEEEeccCCCeEEEEEe-cCCCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEE
Q 041916 2 PYIYNRDGTELHCLKEHGAVLKLQFL-RNHFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l 75 (359)
|+.|+..+.....+.... +.++++. +++.+++ +... .+.++|+.+++....+.. ....++.+++.|+|++.
T Consensus 24 i~~~~~~~~~~~~~~~~~-~~G~~~~~~~g~l~v-~~~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly 100 (246)
T PF08450_consen 24 IYRVDPDTGEVEVIDLPG-PNGMAFDRPDGRLYV-ADSG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLY 100 (246)
T ss_dssp EEEEETTTTEEEEEESSS-EEEEEEECTTSEEEE-EETT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EE
T ss_pred EEEEECCCCeEEEEecCC-CceEEEEccCCEEEE-EEcC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEE
Confidence 445553333333333333 6788888 6655544 4444 566669998865443332 34568899999999987
Q ss_pred EEEeCC--------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcCC--c-----eeeEe
Q 041916 76 SLGHSG--------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA-TSGKECKIKIWDLRK--Y-----EVLQT 139 (359)
Q Consensus 76 ~sg~~d--------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-~~~~d~~i~iwd~~~--~-----~~~~~ 139 (359)
++.... |.|..++.. ++..... ..-...+.|+|+|+++.|+ +-+..+.|..||+.. . +.+..
T Consensus 101 ~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~ 178 (246)
T PF08450_consen 101 VTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFID 178 (246)
T ss_dssp EEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE
T ss_pred EEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEE
Confidence 776543 668888877 5433333 3345568999999999876 556778899999863 2 12223
Q ss_pred ccC---CceeEEEcCCc-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEE
Q 041916 140 LPG---HAKTLDFSQKG-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGI 203 (359)
Q Consensus 140 ~~~---~i~~~~~s~~g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~ 203 (359)
+.. .+..+++..+| ++++ ...+.|.++|.. + ..+..+.... ..+++++|. |+.+.|.+
T Consensus 179 ~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G-~~~~~i~~p~----~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 179 FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G-KLLREIELPV----PRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp -SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S-CEEEEEE-SS----SSEEEEEEESTTSSEEEE
T ss_pred cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c-cEEEEEcCCC----CCEEEEEEECCCCCEEEE
Confidence 322 36889999999 5444 467899999954 4 4554444332 278999994 56565544
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=6.6e-08 Score=98.50 Aligned_cols=150 Identities=13% Similarity=0.125 Sum_probs=106.1
Q ss_pred eEEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecC---------------CCCeEEEEEcCCCC-EEEEEeCCCe
Q 041916 21 VLKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTG---------------LGRTDVMRVNPFNG-VVSLGHSGGT 83 (359)
Q Consensus 21 ~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~v~~~~~sp~~~-~l~sg~~dg~ 83 (359)
+..++|+| ++.++++.+.++.|++||..++... .+.+. ....+.|+++|++. ++++.+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 47899999 5666677777899999999877542 22111 12456799999987 5556667799
Q ss_pred EEEEeCCCCcceEEEe-------------cc--------CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c
Q 041916 84 VTMWKPTTAAPLIKML-------------CH--------QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P 141 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~-------------~h--------~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~ 141 (359)
|++||+.++....... .+ -....+++|+++|.++++-+.++.|++||..++...... .
T Consensus 764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~ 843 (1057)
T PLN02919 764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT 843 (1057)
T ss_pred EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence 9999998764221110 00 012358999999998888889999999999887654322 1
Q ss_pred ---------------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 142 ---------------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 142 ---------------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
..+..++++++| +++-+.++.|++||+.++
T Consensus 844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 146789999999 444456789999998765
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.05 E-value=5.7e-08 Score=86.56 Aligned_cols=194 Identities=12% Similarity=0.129 Sum_probs=133.1
Q ss_pred CeEEEEEecC--CCEEEE-----EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-----------CC
Q 041916 20 AVLKLQFLRN--HFLLAS-----INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-----------SG 81 (359)
Q Consensus 20 ~~~~l~~s~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-----------~d 81 (359)
++...+|+|- +.-||. .+..+++++|.+..+..+.+..-....-..+.|++.|.+|++-- ..
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfge 254 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGE 254 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceecc
Confidence 3477888885 344554 45688999999987776655443333345688999998765421 12
Q ss_pred CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEec-cCCceeEEEcCCc--eEE
Q 041916 82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTL-PGHAKTLDFSQKG--LLA 156 (359)
Q Consensus 82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s~~g--l~~ 156 (359)
.+++|+++......... .-.++|...+|.|.++.+++++ .+..+.++|++.. ....+ +..-..+.|||.+ ++.
T Consensus 255 snLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~~fsp~~r~il~ 332 (561)
T COG5354 255 SNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTIFFSPHERYILF 332 (561)
T ss_pred ceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccccccCcccEEEE
Confidence 46888888754433333 5688999999999988877665 6789999999976 55555 5566889999999 666
Q ss_pred EEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 157 VGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 157 ~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
+|.| |.+.+||..........+.+. ...-+.|+|++.++.+....-. -..|..+++|++
T Consensus 333 agF~nl~gni~i~~~~~rf~~~~~~~~~------n~s~~~wspd~qF~~~~~ts~k------~~~Dn~i~l~~v 394 (561)
T COG5354 333 AGFDNLQGNIEIFDPAGRFKVAGAFNGL------NTSYCDWSPDGQFYDTDTTSEK------LRVDNSIKLWDV 394 (561)
T ss_pred ecCCccccceEEeccCCceEEEEEeecC------CceEeeccCCceEEEecCCCcc------cccCcceEEEEe
Confidence 6655 799999966554444344444 4566789999999877654431 123555555554
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.03 E-value=8.3e-08 Score=78.94 Aligned_cols=176 Identities=9% Similarity=0.023 Sum_probs=116.5
Q ss_pred EEEEEec-----CCCEEEEEecCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCcc
Q 041916 22 LKLQFLR-----NHFLLASINKFGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 22 ~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~~ 94 (359)
..|.|-| ..-+||.||..|...+|.+.+.+. +.....|...|+-+.=.-+ ..-+..++.|.++++.++.-+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 5666766 346899999999999999986553 3333334433322211111 12355577888888887764432
Q ss_pred eEEEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEec----cCCceeEEEcCCc--eEEEEcCCcEE
Q 041916 95 LIKMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQTL----PGHAKTLDFSQKG--LLAVGTGSFVQ 164 (359)
Q Consensus 95 ~~~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~----~~~i~~~~~s~~g--l~~~~~d~~i~ 164 (359)
-.. .|.. .+.++++++|++++++.+....|..|.+... ..+... ..+-.+.+|+... ++++..||++.
T Consensus 151 ~~~--~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 151 KFA--VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA 228 (344)
T ss_pred cce--eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence 222 2332 3789999999999999999999999988753 223322 3456788898877 77788999999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
|||++....+........-.+.+.+..+.|+|.|.
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 99988765544433222112556899999998664
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=5e-08 Score=91.45 Aligned_cols=135 Identities=16% Similarity=0.273 Sum_probs=107.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC-----CCEEEEEeCCCeEEEEeCC---CCcceEEEec
Q 041916 29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF-----NGVVSLGHSGGTVTMWKPT---TAAPLIKMLC 100 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~sg~~dg~v~lwd~~---~~~~~~~~~~ 100 (359)
+|.+++||+.||.|.|..+.+++...++.-+ .++.+++++|+ .+.+++|+.-| +.++.-+ ....+ .+..
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~ 158 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSE 158 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeec
Confidence 5899999999999999999998877776644 68999999998 36799999988 7777522 11222 4556
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC---------CceeEEEcCCceEEEEcCCcEEEEcCC
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG---------HAKTLDFSQKGLLAVGTGSFVQILGDF 169 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---------~i~~~~~s~~gl~~~~~d~~i~i~d~~ 169 (359)
..|+|.++.| .|+++|-++.+| |++||+.+.+.+..++- ....+.|.++..++.|...+|.|..+.
T Consensus 159 ~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 159 GEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred CccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 6889999999 478999998877 99999999887776621 236788999988888888899998866
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=5e-09 Score=90.55 Aligned_cols=149 Identities=13% Similarity=0.076 Sum_probs=106.1
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeE----EEEEecCCCCeEEEEEcCCCCEEEE---EeCCCeEEEEeCCCCcc
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEI----VGNFRTGLGRTDVMRVNPFNGVVSL---GHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~sp~~~~l~s---g~~dg~v~lwd~~~~~~ 94 (359)
..+.++|.+++||++..+....++++..... +.... -....+.+.|-.+...... ++....+.+|....+.
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~- 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR- 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence 4556678899999998888877887764332 22222 1222344444444433333 4455566666665543
Q ss_pred eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916 95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~ 169 (359)
...+.+|-+.+++|+|+||+.+|+++..|..|++-....-..+..| ..-|..++.-++. ++++|.|++|++||+.
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence 3445699999999999999999999999999999877665555555 3458999999988 8999999999999988
Q ss_pred CCC
Q 041916 170 SGS 172 (359)
Q Consensus 170 ~~~ 172 (359)
++.
T Consensus 224 sgk 226 (390)
T KOG3914|consen 224 SGK 226 (390)
T ss_pred cCC
Confidence 874
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=2.3e-09 Score=96.16 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=118.6
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG 82 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg 82 (359)
.+..+.+|... ..++-..+.+-+++++.|.+|++|.+.. ..+..++..|..+|+++.|-.+.++++ +.||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence 35667788876 7777666778899999999999999864 237778889999999999999888776 4588
Q ss_pred eEEEEeCCCCcceEEEe--ccCCCeEEEEEcC--CCCEE-EEEeCCCeEEEEEcCCceeeEec-----c---CCceeEEE
Q 041916 83 TVTMWKPTTAAPLIKML--CHQGPVSALAFHP--NGHLM-ATSGKECKIKIWDLRKYEVLQTL-----P---GHAKTLDF 149 (359)
Q Consensus 83 ~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~--~~~~l-~~~~~d~~i~iwd~~~~~~~~~~-----~---~~i~~~~~ 149 (359)
.|.+||+--+.++..+. ...+.+..+..-| +...+ +.|+...+|+++|.|....+..+ + +-+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 89999987777765443 2223333343334 34444 44478899999999987655444 2 34689999
Q ss_pred cCCc--eEEEEcCCcEEEEcCCCC
Q 041916 150 SQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 150 s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
.|.| +.++-+.|.|.+.|.+++
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G 908 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG 908 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC
Confidence 9999 556667899999998777
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=94.03 Aligned_cols=196 Identities=11% Similarity=0.099 Sum_probs=139.3
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe---------------EEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 041916 17 EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE---------------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSG 81 (359)
Q Consensus 17 ~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d 81 (359)
.|....|++|+....++|.||.||.+++..+.+.. .-.++.+|.+.|..+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 34444999999999999999999999999886521 123567999999999999999999999999
Q ss_pred CeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-EeccC-CceeEEEcCCc--eE
Q 041916 82 GTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-QTLPG-HAKTLDFSQKG--LL 155 (359)
Q Consensus 82 g~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~-~i~~~~~s~~g--l~ 155 (359)
|.|.+|-+-.+.-...+. ...+.|.+++|+.||..++..-.||.|.+=.+...+.- ..+.+ ....+.||+|. ++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 999999887665333222 34667899999999999999999999988776653321 12233 45788999998 55
Q ss_pred EEEcCCcEEEEcCCCCCCc-------cceeecccCCCCcceEEEEEe--------eCCCEEEEEcCCCeEEEE
Q 041916 156 AVGTGSFVQILGDFSGSHN-------YSRYMGHSMVKGYQIGKVSFR--------PYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~v~~~~~~--------p~~~~l~~~~~dg~~~i~ 213 (359)
.+-..|.+.+||...+... +......+. .+..|..+.|. |+-..|+++-.+|.+.+.
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~-~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN-FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecC-CCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 5666799999995432110 000000100 11235556654 467788888888866553
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.96 E-value=8.5e-09 Score=89.13 Aligned_cols=124 Identities=13% Similarity=0.172 Sum_probs=92.5
Q ss_pred eccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 041916 15 LKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 15 l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~ 91 (359)
......++++.|..+......+.. ...+.+|....+. ...+-+|.+.+..++|+||++.|+++..|..|++-....
T Consensus 104 ~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 104 SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA 182 (390)
T ss_pred eecccCcceeeeeeccceEEEEeecCCceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc
Confidence 333344466666666554444433 4445555555433 344558999999999999999999999999999987665
Q ss_pred CcceEEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 92 AAPLIKM-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 92 ~~~~~~~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
...+..| .+|..-|..++.-++ ..|+++|.|++|++||+++|+++.++
T Consensus 183 ~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 183 TFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCccccc
Confidence 5555554 389999999998765 45899999999999999999998877
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.93 E-value=4.6e-09 Score=97.20 Aligned_cols=195 Identities=15% Similarity=0.212 Sum_probs=137.0
Q ss_pred EEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCCC--CeEEEEEcCCC--CEEEEEeCCCeEEEE
Q 041916 13 HCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGLG--RTDVMRVNPFN--GVVSLGHSGGTVTMW 87 (359)
Q Consensus 13 ~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~--~v~~~~~sp~~--~~l~sg~~dg~v~lw 87 (359)
..+........+..+|.|.-+|.++.-| +.+.|+.. +.+..-+. |.. .|-.+.|+|.. .+.++......-.+|
T Consensus 19 lsl~v~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw 96 (1081)
T KOG0309|consen 19 LSLKVDGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW 96 (1081)
T ss_pred eEEEecCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence 3455555668889999999888888776 55667654 33333333 322 46678888864 344444444556689
Q ss_pred eCCCC---cceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCCc--eEEE
Q 041916 88 KPTTA---APLIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQKG--LLAV 157 (359)
Q Consensus 88 d~~~~---~~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~g--l~~~ 157 (359)
++... .....+.+|...|+.+.|+|. ...+++++.|..+..||+++. .++..+ ....+.+.|+-.. +++.
T Consensus 97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 87533 223345589999999999995 456899999999999999985 456655 4567889998755 8888
Q ss_pred EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEE
Q 041916 158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSIL 213 (359)
Q Consensus 158 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~ 213 (359)
+.++.|.+||++.+..++..+.+|.. .|+++.|.... ..+.+.+.||++.+|
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~vs----~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHVS----SVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccce----eeehHHHhhhhhhhhcccCCCCceeee
Confidence 88899999999999888888888765 78888887543 234444444444444
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=3.5e-07 Score=81.04 Aligned_cols=138 Identities=17% Similarity=0.187 Sum_probs=110.6
Q ss_pred eccCCCeEEEEEecCCCEEEEEecCC-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916 15 LKEHGAVLKLQFLRNHFLLASINKFG-QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA 93 (359)
Q Consensus 15 l~~h~~~~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~ 93 (359)
+....++.-..+..++.-++.|..|| .|-|+|..+++ +..+...-+.|.++..+|+|..++++.....+.+.|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 33334455555666667788899998 99999998776 45667778899999999999999999999999999999998
Q ss_pred ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCceeeEec--cCCceeEEEcCCc
Q 041916 94 PLIKMLCHQGPVSALAFHPNGHLMATSGKEC----KIKIWDLRKYEVLQTL--PGHAKTLDFSQKG 153 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g 153 (359)
....-+...+-|+.++|||+++++|-+--+| .|++||+.+++..... .+.-.+.+|.|+|
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCC
Confidence 6555456678899999999999999876554 6999999998875544 4455778899998
No 281
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.93 E-value=6.4e-07 Score=76.37 Aligned_cols=208 Identities=16% Similarity=0.070 Sum_probs=128.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEE-EEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKL-QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+|..|| .+|+++....--... ..+ ...+++..+++++.++.|..||..+|+.+..+... +++.... ...+..+++
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~-~~~~~~v~v 81 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAP-VVDGGRVYV 81 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGE-EEETTEEEE
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-cccccee-eeccccccc
Confidence 378899 799998887642222 222 13335666777789999999999999999888763 2222211 223456677
Q ss_pred EeCCCeEEEEeCCCCcceEEE-eccC---CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCc---------
Q 041916 78 GHSGGTVTMWKPTTAAPLIKM-LCHQ---GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHA--------- 144 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~-~~h~---~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i--------- 144 (359)
++.++.|..+|+.+|+.+... .... ..........++..++++..++.|..+|+.+|+.+.......
T Consensus 82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 778889999999999988874 3221 111222333347888888889999999999999877662111
Q ss_pred ----eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 145 ----KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 145 ----~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
..-....++ +++++.++.+..+|+.++... .....+ .+.. ...+.+..|++++.++.+..+...++
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~-w~~~~~------~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKL-WSKPIS------GIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEE-EEECSS-------ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecccccceEEECCEEEEEcCCCeEEEEECCCCCEE-EEecCC------CccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 122222344 666666775444487777422 111111 2222 14566777777777776666665443
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=3.9e-07 Score=91.38 Aligned_cols=187 Identities=14% Similarity=0.176 Sum_probs=126.0
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEE----ECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQ----DVTMG--EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iw----d~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~ 94 (359)
+.++.|.++...|+.+..+|.|.+. |..+. +.+..+ ...|.+++||||+.+|+....+|+|.+.+- +..+
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~ 153 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTR-DFDP 153 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceE
Confidence 4888899998888888899999999 55443 234444 367999999999999999999998887641 1100
Q ss_pred ----------------e--------EEEec------------------------cCCCeEEEEEcCCCCEEEEEeC---C
Q 041916 95 ----------------L--------IKMLC------------------------HQGPVSALAFHPNGHLMATSGK---E 123 (359)
Q Consensus 95 ----------------~--------~~~~~------------------------h~~~v~~i~~~~~~~~l~~~~~---d 123 (359)
+ ..|.| +.+.-..|+|-.||.++|+.+. .
T Consensus 154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~ 233 (928)
T PF04762_consen 154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPET 233 (928)
T ss_pred EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCC
Confidence 0 01110 2223457999999999998874 2
Q ss_pred ---CeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEc----CCcEEEEcCCCCCCccceeecccCCCCcceEEE
Q 041916 124 ---CKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGT----GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKV 192 (359)
Q Consensus 124 ---~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~ 192 (359)
..|++|+-. |....+- .+--.+++|-|.| ++++.. ...|.+|. ++| .....+.-........|..+
T Consensus 234 ~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNG-LrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 234 GSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNG-LRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCC-cEeeeEecCCCCCCceeeEE
Confidence 579999865 5543333 2334789999999 666653 25788887 444 22222221111134479999
Q ss_pred EEeeCCCEEEEEcCCCeEEEEEc
Q 041916 193 SFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 193 ~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
.|++++.+|++...+. +.+|..
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEe
Confidence 9999999999977665 555543
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=3.7e-09 Score=94.86 Aligned_cols=170 Identities=16% Similarity=0.192 Sum_probs=125.1
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCe
Q 041916 53 VGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECK 125 (359)
Q Consensus 53 ~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~ 125 (359)
+..+.+|...|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|..+|.++.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456778988888888777778899999999999999763 23667788999999999999988888765 788
Q ss_pred EEEEEcCCceeeEec-----cCCceeEEEcCC--c--eEEE-EcCCcEEEEcCCCCCCccceeec--ccCCCCcceEEEE
Q 041916 126 IKIWDLRKYEVLQTL-----PGHAKTLDFSQK--G--LLAV-GTGSFVQILGDFSGSHNYSRYMG--HSMVKGYQIGKVS 193 (359)
Q Consensus 126 i~iwd~~~~~~~~~~-----~~~i~~~~~s~~--g--l~~~-~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~v~~~~ 193 (359)
|.+||.--++++..+ .+.+..+..-|+ . ++++ +...+|+++|.+..+ -...+.. -.+ +...+.+++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-~~~E~kVcna~~-Pna~~R~ia 883 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-WTCELKVCNAPG-PNALTRAIA 883 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-ceeeEEeccCCC-CchheeEEE
Confidence 999999888877655 233444444443 2 4444 467899999976652 2222211 122 445789999
Q ss_pred EeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 194 FRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 194 ~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
..|.|+.|++|-++|.+-++.+-. ...+..|..
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~-G~vINswrp 916 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARN-GKVINSWRP 916 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCC-CceeccCCc
Confidence 999999999999999888877543 344666753
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=3.2e-07 Score=81.27 Aligned_cols=170 Identities=14% Similarity=0.123 Sum_probs=126.2
Q ss_pred Eec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcceEEEeccCC
Q 041916 26 FLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG-TVTMWKPTTAAPLIKMLCHQG 103 (359)
Q Consensus 26 ~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-~v~lwd~~~~~~~~~~~~h~~ 103 (359)
|++ +|.+++..| -|...|.+...+-.+. + +|.+.|.-..+..++.-++.|..|| .+-++|..+++ +..+...-+
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCcc
Confidence 444 578888877 4578888876554332 2 4667788888888888899999999 89999998775 344556778
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEc-----CCcEEEEcCCCCCCc
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGT-----GSFVQILGDFSGSHN 174 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~-----d~~i~i~d~~~~~~~ 174 (359)
.|.++..+|+|++++++.....|.++|+.++.+...- .+-|+.++|||++ +++-+. ...|++||+..+ +.
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Ki 481 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KI 481 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eE
Confidence 8999999999999999999999999999998764332 4678999999999 666542 357999997665 32
Q ss_pred cceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.. ..... +.=.+-+|.|++++|..-+
T Consensus 482 y~-vTT~t----a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 482 YD-VTTPT----AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EE-ecCCc----ccccCcccCCCCcEEEEEe
Confidence 22 22221 1345678999999886543
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=1.3e-07 Score=88.44 Aligned_cols=218 Identities=15% Similarity=0.149 Sum_probs=155.9
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecC------------CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRN------------HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR 67 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~------------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 67 (359)
|.+.| .+-+.+..+..|... +.+.|.|- .-+||++.-.|.|.+||...+..+..+..|..++..++
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 45666 666778888888876 99999872 12577888899999999999988889999999999999
Q ss_pred EcCC---C-CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC-------ce
Q 041916 68 VNPF---N-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK-------YE 135 (359)
Q Consensus 68 ~sp~---~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~-------~~ 135 (359)
|-|. . ..|++-+...+|.+|+..+|+.+...........|+.++| |.+.+..-+..|.+.+.+.-. ++
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 9763 3 4677777788999999999999988876667778899999 677777666677777766532 12
Q ss_pred eeEec----------------------cCC------ceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916 136 VLQTL----------------------PGH------AKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK 185 (359)
Q Consensus 136 ~~~~~----------------------~~~------i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 185 (359)
.++.- +.. ...++|+|.- ++.......+.++|+.-. .++....-.. .
T Consensus 197 ~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~-~~l~vvpier--~ 273 (1062)
T KOG1912|consen 197 EFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYE-CCLAVVPIER--G 273 (1062)
T ss_pred eEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhh-ceeEEEEecc--C
Confidence 11111 000 1345678865 667777889999997654 4444443332 2
Q ss_pred CcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916 186 GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF 222 (359)
Q Consensus 186 ~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~ 222 (359)
+.++.++--+|.-+.|.+.+.+|...+++.-.....+
T Consensus 274 ~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 274 GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 2345444445555789999999999998876544433
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=5.3e-09 Score=96.82 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=145.9
Q ss_pred cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 10 TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
..-..+.+|... +.+.|+|.. ..|++++.|..+..||+++.. ++..+..-......++|+-....+.+.+....|.+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 344567788887 999999975 678999999999999998754 55555555556778999875555555566678999
Q ss_pred EeCCCC-cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCce--eeEec--cCCceeEEEcCCc---eEEE
Q 041916 87 WKPTTA-APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYE--VLQTL--PGHAKTLDFSQKG---LLAV 157 (359)
Q Consensus 87 wd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~--~~~~~--~~~i~~~~~s~~g---l~~~ 157 (359)
||++.+ .++..+.+|...|+.+.|+. --..+.+++.|++|+.||..... .-+.. ..++..-.+.|-| ++.-
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp 264 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP 264 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence 999876 57888889999999999986 33458889999999999987542 22222 3455555566644 1111
Q ss_pred E----------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 158 G----------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 158 ~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
. .++....|+..+...++..+.+|.. .|..+.|-..+.. .|..|..-.-+++-+.|..+++|-+
T Consensus 265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D----~V~eFlWR~r~e~--~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD----VVLEFLWRKRKEC--DGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred ccCCeeeeeccccchhhhhccccCCcceeeecCcch----HHHHHhhhhcccc--cCCCCccceeEEEeecCCceEeeec
Confidence 1 1222333554455667788888865 7777777654431 1223333345666777888888876
Q ss_pred C
Q 041916 228 N 228 (359)
Q Consensus 228 ~ 228 (359)
.
T Consensus 339 ~ 339 (1081)
T KOG0309|consen 339 D 339 (1081)
T ss_pred c
Confidence 4
No 287
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.89 E-value=1.9e-06 Score=76.59 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=111.8
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCcceEEEeccCC------
Q 041916 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS----------GGTVTMWKPTTAAPLIKMLCHQG------ 103 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~----------dg~v~lwd~~~~~~~~~~~~h~~------ 103 (359)
+.|.+.|..+++.+..+.....+- .+ +|||++.|+++.. +..|.+||+.+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999999998665443 35 9999987777654 78999999999999888764222
Q ss_pred -CeEEEEEcCCCCEEEEEe-C-CCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccc-e
Q 041916 104 -PVSALAFHPNGHLMATSG-K-ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYS-R 177 (359)
Q Consensus 104 -~v~~i~~~~~~~~l~~~~-~-d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~-~ 177 (359)
....++++|||++|++.. . +..|.+.|+.+++.+.++ ++...-...+++.+++.+.||......+...+.... .
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~ 184 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP 184 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence 224789999999999877 3 689999999999998888 333333444444444555555544443333222110 0
Q ss_pred e-ecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEc
Q 041916 178 Y-MGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 178 ~-~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~ 215 (359)
. .-+.. ...-...-.|.+ +|.++.+... |.+.++..
T Consensus 185 ~~vf~~~-~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~ 222 (352)
T TIGR02658 185 TEVFHPE-DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDL 222 (352)
T ss_pred eeeecCC-ccccccCCceEcCCCcEEEEecC-CeEEEEec
Confidence 0 00000 000001114566 7877777666 77777763
No 288
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=8.6e-09 Score=87.48 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=98.8
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-----eEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 041916 17 EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-----EIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 17 ~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~ 90 (359)
...++.++.|...++++..|..+|.|..+|++.+ .+...+ .|.+.|+++..-. ++.+|++.+.+|.|.+||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 3345677888888899999999999999999864 344444 4888999988766 67889999999999999998
Q ss_pred CCcc---eEEEeccCCCeEE--EEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc
Q 041916 91 TAAP---LIKMLCHQGPVSA--LAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP 141 (359)
Q Consensus 91 ~~~~---~~~~~~h~~~v~~--i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 141 (359)
.-++ +..+.+|...-.- +.+++....+++++.|...++|.++.+..+.+++
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 7766 8888888553222 3345666788889999999999999999988883
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=2.1e-07 Score=76.60 Aligned_cols=141 Identities=13% Similarity=-0.023 Sum_probs=101.7
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEE--EeccCCCeEEE
Q 041916 32 LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-APLIK--MLCHQGPVSAL 108 (359)
Q Consensus 32 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-~~~~~--~~~h~~~v~~i 108 (359)
-+..++.|.++++.++..+..-..+....-.+.+++.++++.++++.+....|..|.+... ..+.. .....+.-.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~ 209 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN 209 (344)
T ss_pred ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence 3555677888888888654332222222233789999999999999999999999988643 32222 22334445678
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec-------cCCceeEEEcCCc---eEEEEc-CCcEEEEcCCCCC
Q 041916 109 AFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL-------PGHAKTLDFSQKG---LLAVGT-GSFVQILGDFSGS 172 (359)
Q Consensus 109 ~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-------~~~i~~~~~s~~g---l~~~~~-d~~i~i~d~~~~~ 172 (359)
+|+.....+|++..||++.|||+|.. .+.... .|.+..+.|++-| ++..+. -+.+.+.|+++..
T Consensus 210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 99999999999999999999999974 333332 4678999999977 555554 4899999988763
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.87 E-value=3.7e-07 Score=81.47 Aligned_cols=193 Identities=18% Similarity=0.150 Sum_probs=129.6
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCC---------------eEEEEECCCCeEEEEEecCCCC--e
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFG---------------QLRYQDVTMGEIVGNFRTGLGR--T 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~--v 63 (359)
|.+|+ ..+..+.. -.|..+.-+.|+|.++||.+-+..+ .+.+||+.+|..+..+..-..+ .
T Consensus 55 V~~~~g~~~~~l~~-~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~ 133 (561)
T COG5354 55 VECWGGPSKAKLVR-FRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG 133 (561)
T ss_pred eEEccccchhheee-eecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc
Confidence 56777 44443322 3477889999999999999976533 4899999999999999876655 4
Q ss_pred E-EEEEcCCCCEEEEEeCCCeEEEEeCCCCc----ceEEEeccCCCeEEEEEcCCCC--EEEE-----EeCCCeEEEEEc
Q 041916 64 D-VMRVNPFNGVVSLGHSGGTVTMWKPTTAA----PLIKMLCHQGPVSALAFHPNGH--LMAT-----SGKECKIKIWDL 131 (359)
Q Consensus 64 ~-~~~~sp~~~~l~sg~~dg~v~lwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~--~l~~-----~~~d~~i~iwd~ 131 (359)
+ -+.|+-+..++|-- ....++++++ ++. +...+. ...|...+|+|.|+ .|+. .+.++++++|.+
T Consensus 134 Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sI 209 (561)
T COG5354 134 WPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSI 209 (561)
T ss_pred cceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEc
Confidence 4 78898888776654 3346899997 332 222222 35688899999643 3444 356789999999
Q ss_pred CCceeeEec---cCCceeEEEcCCc--eEE-E-E---------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe
Q 041916 132 RKYEVLQTL---PGHAKTLDFSQKG--LLA-V-G---------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR 195 (359)
Q Consensus 132 ~~~~~~~~~---~~~i~~~~~s~~g--l~~-~-~---------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 195 (359)
..+..+.+. ...-..+.|.+.| ++. + . ....++++++... .+.....- .++|.+++|.
T Consensus 210 p~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~--~i~V~~~~----~~pVhdf~W~ 283 (561)
T COG5354 210 PKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER--SIPVEKDL----KDPVHDFTWE 283 (561)
T ss_pred cCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc--ccceeccc----cccceeeeec
Confidence 876665443 4455678899998 221 1 1 1257888886533 22222122 2389999999
Q ss_pred eCCCEEEEEc
Q 041916 196 PYEDVLGIGH 205 (359)
Q Consensus 196 p~~~~l~~~~ 205 (359)
|.++.+++.+
T Consensus 284 p~S~~F~vi~ 293 (561)
T COG5354 284 PLSSRFAVIS 293 (561)
T ss_pred ccCCceeEEe
Confidence 9998877655
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=9.9e-09 Score=60.58 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=37.1
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 50 GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 50 ~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
|+++..+.+|.++|.+|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.87 E-value=5.4e-08 Score=79.67 Aligned_cols=158 Identities=13% Similarity=0.138 Sum_probs=98.1
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEec-CCCCeEEEEEcCCCCEEEEEe-----CCC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFRT-GLGRTDVMRVNPFNGVVSLGH-----SGG 82 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~v~~~~~sp~~~~l~sg~-----~dg 82 (359)
..+++..|.++ .+-+.+-.+.-+++++.||.+.+++.+.-. ..+.+.. |.+ -.+.+....++.+.++. .-+
T Consensus 81 ~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-ccccceeecccEEecCCcceEeecc
Confidence 35566666666 444445556789999999999999976411 1111111 111 11122222334444432 123
Q ss_pred eEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc---e
Q 041916 83 TVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG---L 154 (359)
Q Consensus 83 ~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g---l 154 (359)
..+.|+++..+.+..-.--...|++++-+| ..+.+++|+.||.+.+||.|+......+ +..+..+-|+|.. +
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 455666653322211111123489999999 4556788889999999999987433332 5688999999976 9
Q ss_pred EEEEcCCcEEEEcCC
Q 041916 155 LAVGTGSFVQILGDF 169 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~ 169 (359)
++++.||.+--||..
T Consensus 240 ft~sedGslw~wdas 254 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAS 254 (319)
T ss_pred eEecCCCcEEEEcCC
Confidence 999999999999954
No 293
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.87 E-value=8.1e-09 Score=60.94 Aligned_cols=38 Identities=21% Similarity=0.622 Sum_probs=36.1
Q ss_pred cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916 93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130 (359)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd 130 (359)
+++.++.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999998
No 294
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=4.1e-08 Score=83.41 Aligned_cols=153 Identities=12% Similarity=0.175 Sum_probs=109.1
Q ss_pred cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe-E--EEEEecCC-----CCeEEEEEcCCC-CEEEEEeCCCeEEE
Q 041916 17 EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE-I--VGNFRTGL-----GRTDVMRVNPFN-GVVSLGHSGGTVTM 86 (359)
Q Consensus 17 ~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~--~~~~~~~~-----~~v~~~~~sp~~-~~l~sg~~dg~v~l 86 (359)
.|+-. ++++++.|+..++++. |=.|.+|++.--. . +.-++.+. .-|++..|+|.. +.++..+..|+|++
T Consensus 162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 46555 9999999999888875 7789999986322 1 22223232 247888999965 67888899999999
Q ss_pred EeCCCCcceE----E------------EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-CceeeEecc--------
Q 041916 87 WKPTTAAPLI----K------------MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVLQTLP-------- 141 (359)
Q Consensus 87 wd~~~~~~~~----~------------~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~-------- 141 (359)
.|+++..... . +..--..|.++.|+++|+||++-.. -+|++||+. ..+++.+++
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence 9998542211 0 1111246789999999999998765 689999994 455555441
Q ss_pred -------CCc---eeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 142 -------GHA---KTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 142 -------~~i---~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
..| ..++|+.++ +++|+..+..++|++..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 122 568899887 788889999999996554
No 295
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.86 E-value=9.9e-07 Score=80.79 Aligned_cols=206 Identities=19% Similarity=0.172 Sum_probs=122.8
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE-----EEEEcCCCCE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-----VMRVNPFNGV 74 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~~~~sp~~~~ 74 (359)
|+.+| .+|+++........+ ..... .+..++.++.+|.|..||..+|+.+..+......+. +... .+..
T Consensus 117 l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~ 192 (377)
T TIGR03300 117 VIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGG 192 (377)
T ss_pred EEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCE
Confidence 45667 577776655443333 11222 234566677889999999999998877764332211 1111 1246
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEecc-C-C-----CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEeccC-Cc
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCH-Q-G-----PVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLPG-HA 144 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h-~-~-----~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~i 144 (359)
++.++.+|.+..+|+.+++.+...... . + ....+.-+| .+..+++++.+|.+..||..+++.+..... ..
T Consensus 193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~ 272 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY 272 (377)
T ss_pred EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc
Confidence 778888999999999999766543211 0 0 000111112 356788888999999999999987766632 22
Q ss_pred eeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 145 KTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 145 ~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
..+....+.+++++.+|.|..+|..++. .+...... ......+... .+..|++++.+|.+.++...+
T Consensus 273 ~~p~~~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~---~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 273 QGPAVDDNRLYVTDADGVVVALDRRSGS-ELWKNDEL---KYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred cCceEeCCEEEEECCCCeEEEEECCCCc-EEEccccc---cCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 2333333337778889999999987763 22222111 0111222222 367888888888777766433
No 296
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=4.6e-06 Score=69.77 Aligned_cols=190 Identities=16% Similarity=0.140 Sum_probs=120.4
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEec---CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRT---GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~---~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
++.+++|++||.. .|..|.|-..++. .++..... ....-.-++||||+.+||.+...|+|++||+.. ..+..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 5677889988876 4668888776653 23333332 223467899999999999999999999999864 333333
Q ss_pred ec-------cCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCC-----ceeeEec------cCCceeEEEcCCc-
Q 041916 99 LC-------HQGPVSALAFHPN------GHLMATSGKECKIKIWDLRK-----YEVLQTL------PGHAKTLDFSQKG- 153 (359)
Q Consensus 99 ~~-------h~~~v~~i~~~~~------~~~l~~~~~d~~i~iwd~~~-----~~~~~~~------~~~i~~~~~s~~g- 153 (359)
.. -...|..+.|-+. ...|++.+.+|.++-|-+.. ++..++| +..|.++.++|..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 1235666667542 22477777888888776532 3344444 4578999999987
Q ss_pred -eEEEEc-C----------CcEEEEcCCCCCCccce-------------------ee-----cccCCCCcceEEEEEeeC
Q 041916 154 -LLAVGT-G----------SFVQILGDFSGSHNYSR-------------------YM-----GHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 154 -l~~~~~-d----------~~i~i~d~~~~~~~~~~-------------------~~-----~~~~~~~~~v~~~~~~p~ 197 (359)
++++|. . .-+..|.+.++.+-... +. .........|..+..+||
T Consensus 161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd 240 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD 240 (282)
T ss_pred EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence 444442 1 13566765443211110 00 000113446889999999
Q ss_pred CCEEEEEcCCCeEEEEEc
Q 041916 198 EDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 198 ~~~l~~~~~dg~~~i~~~ 215 (359)
|..|++.+.+|.+.+|..
T Consensus 241 g~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCEEEEEEcCCeEEEEec
Confidence 999999998887777653
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.82 E-value=1.5e-08 Score=82.84 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=78.6
Q ss_pred EEEEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcce
Q 041916 22 LKLQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPL 95 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~ 95 (359)
.+.++...++++.++.. -+..+.|+++.-+.+..-......|++++-+|.. .++++|+.||.+.+||.+.....
T Consensus 136 as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p 215 (319)
T KOG4714|consen 136 ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP 215 (319)
T ss_pred cccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccch
Confidence 33444445555554431 2345566655433222111223349999999965 57788999999999999987543
Q ss_pred -EEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 041916 96 -IKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 96 -~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~ 133 (359)
..+.+|..+++.+.|+| ++..|++++.||.+..||..+
T Consensus 216 ~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 216 VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 44569999999999999 778899999999999999874
No 298
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.81 E-value=1.9e-07 Score=79.42 Aligned_cols=170 Identities=12% Similarity=0.187 Sum_probs=118.2
Q ss_pred CeEEEe--CCCcEEEEecc--CCCeEEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcCCC
Q 041916 1 YPYIYN--RDGTELHCLKE--HGAVLKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 1 ~v~iwd--~~g~~~~~l~~--h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~~ 72 (359)
+|+||- ..|+--..+.. ...++++++.+....|+.|-..|++.-+.+.. ...++....|...+..+-|+-..
T Consensus 47 tvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~ 126 (404)
T KOG1409|consen 47 TVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH 126 (404)
T ss_pred eeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc
Confidence 466776 44444333332 23349999999999999999999998887753 23444555677777777776655
Q ss_pred CEEEEEeCCCe---------------------------------------EEEEe--CCCCcceEEEeccCCCeEEEEEc
Q 041916 73 GVVSLGHSGGT---------------------------------------VTMWK--PTTAAPLIKMLCHQGPVSALAFH 111 (359)
Q Consensus 73 ~~l~sg~~dg~---------------------------------------v~lwd--~~~~~~~~~~~~h~~~v~~i~~~ 111 (359)
..+++.+.|.. |.+-. .+...++.++.+|.+.+.+++|.
T Consensus 127 e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd 206 (404)
T KOG1409|consen 127 EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD 206 (404)
T ss_pred eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence 56665554432 22111 12334566778999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCceeeE-ec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916 112 PNGHLMATSGKECKIKIWDLRKYEVLQ-TL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 112 ~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~ 170 (359)
|....|++|..|..|.+||+...+-+. .+ ...|..+...+.- +++++.||.|.+|++..
T Consensus 207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 207 PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 999999999999999999997644222 22 4456666665554 89999999999999754
No 299
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=1.5e-06 Score=87.35 Aligned_cols=204 Identities=14% Similarity=0.105 Sum_probs=132.4
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCCC
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~ 73 (359)
|+||+++|....+-..-.+. .+++|.|.|+++|+... ...|.+|.- +|-.-..|. .....|..++|++++.
T Consensus 239 iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~ 317 (928)
T PF04762_consen 239 IRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSE 317 (928)
T ss_pred EEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence 78999888876666655555 89999999999998764 356777773 343323332 3456799999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCcc--eEEEe-ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEE
Q 041916 74 VVSLGHSGGTVTMWKPTTAAP--LIKML-CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDF 149 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~--~~~~~-~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~ 149 (359)
.||....|. |.+|...+..- .+.+. .....+..+.|+| +...|...+.+|.+..+++.-.... +-..
T Consensus 318 iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~--------s~~~ 388 (928)
T PF04762_consen 318 ILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSR--------SPGS 388 (928)
T ss_pred EEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEe--------cCCC
Confidence 999977665 99998776532 12222 1223455699999 4555777777787777765311100 0011
Q ss_pred cCC--ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 150 SQK--GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 150 s~~--gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+|+ |.+++-.+..+.+-.+.... ..-++......-..+|.+++|++++..+++-..||.+.++...
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~-VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAV-VPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccC-CCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 222 25566666778887765441 1111111111123489999999999889999999988887743
No 300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.80 E-value=3.5e-06 Score=77.20 Aligned_cols=207 Identities=15% Similarity=0.042 Sum_probs=128.4
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
|+-+| .+|+.+..+.-...+ ..... ++..++.++.++.|..+|..+|+.+............... .+..++.++
T Consensus 77 v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~ 152 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRT 152 (377)
T ss_pred EEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEEC
Confidence 56677 778877666655544 33332 4567788888999999999999988776643221111111 245677788
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeE-----EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--CC---------
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVS-----ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--GH--------- 143 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~-----~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~--------- 143 (359)
.+|.|..||+.+++.+..+......+. +..+ .+..++.++.++.+..+|+.+++.+.... .+
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERL 230 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhh
Confidence 899999999999988777653322111 1111 23467788888999999999988765441 11
Q ss_pred --c-eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 144 --A-KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 144 --i-~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+ .+..+. ++ +++++.+|.+..||..++. ...... .. ....+ ...+..+++++.+|.+..+....+.
T Consensus 231 ~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~-~~W~~~-~~-----~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 231 VDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGR-VLWKRD-AS-----SYQGP--AVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred hccCCccEEE-CCEEEEEEcCCEEEEEECCCCc-EEEeec-cC-----CccCc--eEeCCEEEEECCCCeEEEEECCCCc
Confidence 0 111222 34 7778889999999987763 222211 10 11112 2346677778888877777654443
Q ss_pred CccccccC
Q 041916 220 PNFDSWVA 227 (359)
Q Consensus 220 ~~~~~~~~ 227 (359)
.+|..
T Consensus 301 ---~~W~~ 305 (377)
T TIGR03300 301 ---ELWKN 305 (377)
T ss_pred ---EEEcc
Confidence 24654
No 301
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.79 E-value=2.1e-07 Score=79.23 Aligned_cols=206 Identities=16% Similarity=0.113 Sum_probs=142.2
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
++.+++|.+. +....-|-..-+.+.+.|.+++||--. .++.-..+. .-..+++++.+++....|++|-.+|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 4567788876 777777877889999999999999644 344333332 2346789999999999999999999999886
Q ss_pred CC----CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCc
Q 041916 89 PT----TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSF 162 (359)
Q Consensus 89 ~~----~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~ 162 (359)
+. ....+..+..|...|..+.|+-...++++++.|..+.---.+.+.-+..+ ....+++.+.-.-.+.+...|.
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gq 176 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQ 176 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccc
Confidence 53 44556677799999999999999999999999987765555554443333 2222222221111222333454
Q ss_pred EEEEcCC-CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916 163 VQILGDF-SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN 221 (359)
Q Consensus 163 i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~ 221 (359)
|..-.+. +.-.++..+.+|.. .+++++|.|....|.+|..|..+.+|..+...+.
T Consensus 177 vt~lr~~~~~~~~i~~~~~h~~----~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~ 232 (404)
T KOG1409|consen 177 ITMLKLEQNGCQLITTFNGHTG----EVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT 232 (404)
T ss_pred eEEEEEeecCCceEEEEcCccc----ceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence 4443322 23345666777766 8999999999999999988887777666554443
No 302
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.79 E-value=5.6e-07 Score=82.51 Aligned_cols=210 Identities=16% Similarity=0.184 Sum_probs=127.8
Q ss_pred EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEe---cC-CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-E
Q 041916 4 IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASIN---KF-GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-L 77 (359)
Q Consensus 4 iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s 77 (359)
+-|.+|.....+...... ..-.|+|++..++..+ .. ..+.++|+.++.....+. ..+.-...+|+|||+.|+ +
T Consensus 177 ~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 177 LGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFS 255 (425)
T ss_pred EEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEE
Confidence 334446666666555555 7789999987655432 22 469999999887544433 233445678999997655 4
Q ss_pred EeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceeeEec--cCCceeEEEc
Q 041916 78 GHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-EC--KIKIWDLRKYEVLQTL--PGHAKTLDFS 150 (359)
Q Consensus 78 g~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~~s 150 (359)
...||. |.++|+..+. ...+....+.-+.-.|+|||++|+..+. .| .|.++|+......+.. .+.-....||
T Consensus 256 ~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~S 334 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWS 334 (425)
T ss_pred ECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCC
Confidence 556666 5666777665 3335544555557889999999887664 33 5777777766542222 2223378899
Q ss_pred CCc--eEEEEc-CCc--EEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916 151 QKG--LLAVGT-GSF--VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN 221 (359)
Q Consensus 151 ~~g--l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~ 221 (359)
|+| ++..+. +|. |.++|+.++.. .. ...... ......|.|++..+...+..+....+...+.++.
T Consensus 335 pdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~-~lt~~~----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~ 404 (425)
T COG0823 335 PDGDKIVFESSSGGQWDIDKNDLASGGK-IR-ILTSTY----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGR 404 (425)
T ss_pred CCCCEEEEEeccCCceeeEEeccCCCCc-EE-Eccccc----cCCCCCcCCCCceEEEeccCCCCceEEEeeccce
Confidence 999 333332 454 66777655533 22 222222 4556678899988777666553344443444443
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.79 E-value=1.1e-05 Score=69.29 Aligned_cols=188 Identities=14% Similarity=0.083 Sum_probs=118.0
Q ss_pred EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 22 LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN-PFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 22 ~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
-++.|.+ ++.++++--..+.|..|+..++... .+.... ...+++. +++.+ +.+..++ +.++|+.+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~--~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG--PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS--EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC--CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEee
Confidence 3678998 6777777667899999999887643 333332 6777887 66544 4455554 5566998875433332
Q ss_pred c-----cCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEE-EcCC
Q 041916 100 C-----HQGPVSALAFHPNGHLMATSGKE--------CKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAV-GTGS 161 (359)
Q Consensus 100 ~-----h~~~v~~i~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~-~~d~ 161 (359)
. .....++++++|+|++.++.... |.|..++.. ++..... -...+.|+|+|++ ++++ +..+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccc
Confidence 2 23457899999999977776643 568888877 4433333 3456899999999 4444 4567
Q ss_pred cEEEEcCCCCCCcc---ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 162 FVQILGDFSGSHNY---SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 162 ~i~i~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
.|..|++......+ ..+..... .....-.+++..+|++.++....+.+.++.+.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~-~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~ 213 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPG-GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD 213 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SS-SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT
T ss_pred eeEEEeccccccceeeeeeEEEcCC-CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC
Confidence 89988865432211 22222211 11237789999999877777667766666543
No 304
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=8.8e-09 Score=97.26 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=104.9
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEe
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWK 88 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd 88 (359)
..+|+.|... +|++|+.+.++|+.|+..|.|++|++.+|.....+.+|.++|+-+.-+-+|..+++.+.-. ..-+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 4667788887 9999999999999999999999999999999999999999999999888998766554332 467898
Q ss_pred CCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cC------CceeEEEcCCc
Q 041916 89 PTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PG------HAKTLDFSQKG 153 (359)
Q Consensus 89 ~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~------~i~~~~~s~~g 153 (359)
+.+ +.+.++|.. -.++.|+.....-+.|+......+||+.++.++.++ .+ .-++..|||+.
T Consensus 1174 ~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred cccccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 763 455555542 356778765444444554456888999888877764 21 22667788876
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.74 E-value=1.1e-06 Score=80.35 Aligned_cols=121 Identities=12% Similarity=0.270 Sum_probs=86.1
Q ss_pred EEEeccCCCeEEEEEec-CCCEEEEE----ecCCe----EEEEECCCCeEE----EEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 12 LHCLKEHGAVLKLQFLR-NHFLLASI----NKFGQ----LRYQDVTMGEIV----GNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 12 ~~~l~~h~~~~~l~~s~-~~~~l~s~----~~dg~----i~iwd~~~~~~~----~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+..++...++.++.||- +.+.+.|. +.+|. -++|++..++.. .++ ...+.|.|++++|+...++.|
T Consensus 199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlG 277 (545)
T PF11768_consen 199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLG 277 (545)
T ss_pred EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEE
Confidence 44455555668888876 34555543 22333 357777655422 122 356789999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE 135 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 135 (359)
+.||+|.+||...+... +....-..+.++|+|+|.++++|+..|.+.+||+.-..
T Consensus 278 C~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 278 CEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 99999999998766332 22334456889999999999999999999999987543
No 306
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=6.3e-08 Score=89.64 Aligned_cols=189 Identities=11% Similarity=0.093 Sum_probs=132.6
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE-e-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF-R-TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
.++.+|.+. .-+.|+.+.+.|-|+..+|.|.+|-+-.|.-.... . -..+-|.+|+|+.+|..|+..-.||.|.+=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 567889987 99999999999999999999999999877533222 1 23456889999999999999999999887666
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-------ee-e------EeccCCceeEEEc-----
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-------EV-L------QTLPGHAKTLDFS----- 150 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-------~~-~------~~~~~~i~~~~~s----- 150 (359)
.... +.--.-.-.....+.|++|...++.+-.+|.+.+||.... .+ + ..++..+..+.|.
T Consensus 145 dGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 145 DGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred ccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 5322 2110000112346889999999888888999999997642 11 1 1113346667764
Q ss_pred ---CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 151 ---QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 151 ---~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
|+. ++++-..|.+.|....++..+...-.+ . .+..+.|+++|.+|++++.+.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m----~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M----KIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c----EeecceecCCCcEEEEccCcc
Confidence 355 555556788888865555444333222 3 799999999999999988764
No 307
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=2.5e-07 Score=86.49 Aligned_cols=145 Identities=11% Similarity=0.136 Sum_probs=117.2
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC------------CEEEEEeCCCeEEEEeC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN------------GVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~------------~~l~sg~~dg~v~lwd~ 89 (359)
.++.|+|.| ++|.|+. ..|.+-|..+-+.+.++..|...|+.+.|.|-. -.||++...|.|.+||.
T Consensus 19 ~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred cccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 778899877 5677664 489999999999999999999999999998742 25788888999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc---eEEEEc
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHP---NG-HLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG---LLAVGT 159 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g---l~~~~~ 159 (359)
..+..+..+..|.+++..++|-| +. ..|+......+|.+|+..+|+.+..+. ....|+.+.|-. +...+.
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s 176 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS 176 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc
Confidence 99888888889999999999976 44 457777778899999999999887772 234678887754 666666
Q ss_pred CCcEEEEcC
Q 041916 160 GSFVQILGD 168 (359)
Q Consensus 160 d~~i~i~d~ 168 (359)
.|.+.+-+.
T Consensus 177 ~g~vl~~~~ 185 (1062)
T KOG1912|consen 177 KGFVLSCKD 185 (1062)
T ss_pred CceEEEEec
Confidence 777776664
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=2.3e-07 Score=77.93 Aligned_cols=182 Identities=11% Similarity=0.164 Sum_probs=120.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCC-----eEEEEEecCCC------------CeEEEEEcCCC--CEEEEEeCC
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMG-----EIVGNFRTGLG------------RTDVMRVNPFN--GVVSLGHSG 81 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~------------~v~~~~~sp~~--~~l~sg~~d 81 (359)
++++.|...|.||++|...|.|.+|.-... +....|++|.. .|..+.|..++ ..++..+.|
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 499999999999999999999999985432 23344555542 47788887665 456667799
Q ss_pred CeEEEEeCCCC-------------------cce-----------------------EEE-eccCCCeEEEEEcCCCCEEE
Q 041916 82 GTVTMWKPTTA-------------------APL-----------------------IKM-LCHQGPVSALAFHPNGHLMA 118 (359)
Q Consensus 82 g~v~lwd~~~~-------------------~~~-----------------------~~~-~~h~~~v~~i~~~~~~~~l~ 118 (359)
.+|++|-+... .++ +.+ .+|+-.|++|+|+.|...++
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~l 188 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL 188 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheee
Confidence 99999976422 000 011 24666789999999988887
Q ss_pred EEeCCCeEEEEEcCCcee----eEec-------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCc-----cce-e
Q 041916 119 TSGKECKIKIWDLRKYEV----LQTL-------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN-----YSR-Y 178 (359)
Q Consensus 119 ~~~~d~~i~iwd~~~~~~----~~~~-------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~-----~~~-~ 178 (359)
++ .|-.|.+|++.-... +-.- ..-|++..|+|.. +.-.++.|.|++-|++...-+ +.. .
T Consensus 189 Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~ 267 (460)
T COG5170 189 SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELT 267 (460)
T ss_pred ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhc
Confidence 75 467899998864321 1111 2247899999987 444566799999998743111 110 0
Q ss_pred e---cccC--CCCcceEEEEEeeCCCEEEE
Q 041916 179 M---GHSM--VKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 179 ~---~~~~--~~~~~v~~~~~~p~~~~l~~ 203 (359)
. .+.. .--..|.++.|+++|+++++
T Consensus 268 ~D~v~~~ff~eivsSISD~kFs~ngryIls 297 (460)
T COG5170 268 IDGVDVDFFEEIVSSISDFKFSDNGRYILS 297 (460)
T ss_pred cCcccchhHHHHhhhhcceEEcCCCcEEEE
Confidence 0 0100 01236889999999998766
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=5.4e-07 Score=85.15 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=134.5
Q ss_pred EEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916 3 YIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG 82 (359)
Q Consensus 3 ~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg 82 (359)
-||-.+|++-......-.+++++|+|....|++|-.-|.+.+|...+.+.-.....|..+|..+.|||+|..++++..-|
T Consensus 44 tIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g 123 (1416)
T KOG3617|consen 44 TIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPG 123 (1416)
T ss_pred EEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCc
Confidence 34444454433333333347899999999999999999999999988777666778999999999999999999999999
Q ss_pred eEEEEeCCCCcceE----------------EEe-----------------ccCCCe------------EEEE--EcCCCC
Q 041916 83 TVTMWKPTTAAPLI----------------KML-----------------CHQGPV------------SALA--FHPNGH 115 (359)
Q Consensus 83 ~v~lwd~~~~~~~~----------------~~~-----------------~h~~~v------------~~i~--~~~~~~ 115 (359)
.|.+|.......+. .+. +....+ .+.. =.|+|.
T Consensus 124 ~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~ 203 (1416)
T KOG3617|consen 124 SVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGT 203 (1416)
T ss_pred eeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCc
Confidence 99999765211100 000 000000 0010 125788
Q ss_pred EEEEEeCCCeEEEEEcCCce-eeEeccCC-----------ce--------eEEEc-CCc--------eEEE---EcCCcE
Q 041916 116 LMATSGKECKIKIWDLRKYE-VLQTLPGH-----------AK--------TLDFS-QKG--------LLAV---GTGSFV 163 (359)
Q Consensus 116 ~l~~~~~d~~i~iwd~~~~~-~~~~~~~~-----------i~--------~~~~s-~~g--------l~~~---~~d~~i 163 (359)
.++.++.+|+|+..|-.... .+....+. +. ++-+. |.| -+++ +..|.|
T Consensus 204 ~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgi 283 (1416)
T KOG3617|consen 204 EFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGI 283 (1416)
T ss_pred EEEEEcCCceEEEEcCCCcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcc
Confidence 89999999999888854321 12222111 11 11111 111 0010 111111
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC----CCCccccccCCC
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS----GEPNFDSWVANP 229 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~----~d~~~~~~~~~~ 229 (359)
-+=. ..+ .+..-.......+..+++++++..+..|..|...|.+.+|.-.. +++.++.|.++.
T Consensus 284 A~sE-ssG--vLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~ 350 (1416)
T KOG3617|consen 284 ACSE-SSG--VLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNG 350 (1416)
T ss_pred cccc-ccc--cccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecC
Confidence 1111 000 11111111111345799999999999999999999998886433 466788888753
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.68 E-value=4.2e-07 Score=86.50 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=108.2
Q ss_pred ecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCcceEE
Q 041916 27 LRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---------GGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 27 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~~~~~~~~~ 97 (359)
..++++|.+|...|+|.+-|..+.+.++++.+|.+.|..+.. .|+.|++++. |..|.|||+++...+..
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P 261 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP 261 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC
Confidence 346789999999999999999999999999999999977665 5778888764 56789999998877766
Q ss_pred EeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCc-ee---eEec---cCCceeEEEcCCc--eEEEEcCCcEEEEc
Q 041916 98 MLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKY-EV---LQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILG 167 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~-~~---~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d 167 (359)
+.-+.++ .-+.|+|. ...+++++..|...+-|..+. .+ +..+ ...+..+++|++| ++.+..+|.|.+|-
T Consensus 262 I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 262 IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 6656665 56788884 456888889999999994432 22 1111 3458999999999 55666789999997
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.67 E-value=6.1e-06 Score=69.02 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=100.5
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-------CCCCeEEEEEcCCC------CEEEEEeCCCeEEEEe
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-------GLGRTDVMRVNPFN------GVVSLGHSGGTVTMWK 88 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~sp~~------~~l~sg~~dg~v~lwd 88 (359)
+.++||||+.+||.+...|+|++||+.. ..+..+.. -...|..|.|.+.. ..|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 8899999999999999999999999874 43444332 12456777775432 2456666777777776
Q ss_pred CCCC-----cceEEEe---ccCCCeEEEEEcCCCCEEEEEeCC-----------CeEEEEEcCCcee----eE-------
Q 041916 89 PTTA-----APLIKML---CHQGPVSALAFHPNGHLMATSGKE-----------CKIKIWDLRKYEV----LQ------- 138 (359)
Q Consensus 89 ~~~~-----~~~~~~~---~h~~~v~~i~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~----~~------- 138 (359)
+..+ +...++. .++..|+++.++|..++|++||.. .-+..|.+-++.| +.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 5322 1222332 346789999999998888877631 1266675533211 00
Q ss_pred ------------e---c------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 139 ------------T---L------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 139 ------------~---~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
. + ...|..|..|||| ++++..+|.|.+|++..-
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 0 0 2347889999999 777789999999997654
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.66 E-value=4.6e-06 Score=82.01 Aligned_cols=191 Identities=15% Similarity=0.226 Sum_probs=124.3
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC----CCCcce
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP----TTAAPL 95 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~----~~~~~~ 95 (359)
.+.++.|..+.+-++.+..+|.|.+-|..+.... ....-...|.+++||||+..++..+.++++.+-+- -..+++
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 3588899999888888889999999998776422 22223467999999999999999988888876542 111111
Q ss_pred -------------------EEEeccC---------------------CCeEEEEEcCCCCEEEEEe-----CCCeEEEEE
Q 041916 96 -------------------IKMLCHQ---------------------GPVSALAFHPNGHLMATSG-----KECKIKIWD 130 (359)
Q Consensus 96 -------------------~~~~~h~---------------------~~v~~i~~~~~~~~l~~~~-----~d~~i~iwd 130 (359)
..|.+.. +.=++|+|--||.++|+.. ....|++||
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~d 228 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYD 228 (1265)
T ss_pred ccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEec
Confidence 1122111 1124599999999998843 337999999
Q ss_pred cCCceeeEec---cCCceeEEEcCCc-eEEE----EcCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCC
Q 041916 131 LRKYEVLQTL---PGHAKTLDFSQKG-LLAV----GTGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 131 ~~~~~~~~~~---~~~i~~~~~s~~g-l~~~----~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
-. |..-..- .+--.+++|-|.| ++++ ++++.|.+|. ++|..- ...+.... ..|..++|+.++.
T Consensus 229 rE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de----~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 229 RE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDE----KEVEELAWNSNSD 302 (1265)
T ss_pred cc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccc----cchheeeecCCCC
Confidence 77 3322111 2334789999999 4443 2567899998 444211 11122222 2489999999999
Q ss_pred EEEE---EcCCCeEEEEEcCC
Q 041916 200 VLGI---GHSMGWSSILVPGS 217 (359)
Q Consensus 200 ~l~~---~~~dg~~~i~~~~~ 217 (359)
.|++ ......+.+|.++.
T Consensus 303 iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ceeeeecccccceEEEEEecC
Confidence 9998 33444466665544
No 313
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.65 E-value=1.1e-05 Score=68.69 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=107.6
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE-ecCCC---CeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF-RTGLG---RTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~---~v~~~~~sp~~~~l 75 (359)
|+.|| .+|+.+..+...... ... ..++..+++++.++.|..+|..+|+.+... ..... ....+....++..+
T Consensus 48 l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (238)
T PF13360_consen 48 LYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRL 125 (238)
T ss_dssp EEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEE
T ss_pred EEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEE
Confidence 67888 799988877764443 322 223455666667889999999999999884 43211 11222333347788
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCC----------eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGP----------VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHA 144 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~----------v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i 144 (359)
+++..+|.|..+|+.+|+.+......... +.+-.+..++ .++.++.++.+..+|+.+++.+.... ..+
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~~~~ 204 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPISGI 204 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECSS-E
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecCCCc
Confidence 88888999999999999998887654322 1122222244 77777777754444999998665333 222
Q ss_pred eeEEEcCCc-eEEEEcCCcEEEEcCCCC
Q 041916 145 KTLDFSQKG-LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 145 ~~~~~s~~g-l~~~~~d~~i~i~d~~~~ 171 (359)
..+....++ +++++.++.|.+||+.++
T Consensus 205 ~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 205 YSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp CECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred cCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 222223334 666667999999998877
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=2.6e-06 Score=80.83 Aligned_cols=179 Identities=10% Similarity=-0.009 Sum_probs=119.9
Q ss_pred EEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCC-----eEEEEeCCCC------
Q 041916 25 QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGG-----TVTMWKPTTA------ 92 (359)
Q Consensus 25 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg-----~v~lwd~~~~------ 92 (359)
+|++.+..+|.|+.+|.|.+++- +-+.++.++.+...+...-|.-++ .+|++-+.|+ .|++|++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 57788899999999999999884 345557788877763333344444 6777766554 5899998632
Q ss_pred cce--EEEec-----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC---C--ceeeEec--cCCceeEEEcCCc--eEE
Q 041916 93 APL--IKMLC-----HQGPVSALAFHPNGHLMATSGKECKIKIWDLR---K--YEVLQTL--PGHAKTLDFSQKG--LLA 156 (359)
Q Consensus 93 ~~~--~~~~~-----h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~---~--~~~~~~~--~~~i~~~~~s~~g--l~~ 156 (359)
.++ ..+.. .+.++.+++++.+-..+|+|=.+|.|.++.-. . .+..... ..+|+.+++..++ ++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 222 11222 35678999999998899999999999998421 1 1111222 5689999999988 455
Q ss_pred EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 157 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+..-..|.+|.+....+....+..| |.++.|..|++....+++++..+
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~----G~~lnCss~~~~t~qfIca~~e~ 236 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNN----GISLNCSSFSDGTYQFICAGSEF 236 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccC----CccceeeecCCCCccEEEecCce
Confidence 5556789999876432122334444 44899999988766566655544
No 315
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=5.1e-05 Score=65.36 Aligned_cols=184 Identities=11% Similarity=0.088 Sum_probs=122.4
Q ss_pred EEEEEecC-CCEEEEEecCC-eEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEe-----CCCeEEEEeCC-C
Q 041916 22 LKLQFLRN-HFLLASINKFG-QLRYQDVTMGEIVGNFRTGLGRT--DVMRVNPFNGVVSLGH-----SGGTVTMWKPT-T 91 (359)
Q Consensus 22 ~~l~~s~~-~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~sg~-----~dg~v~lwd~~-~ 91 (359)
..++.+|+ +..++.+-.-| ...+||+.++.....+....+.- -.-+|||||++|++.- ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 56788884 45566665544 56799999999887776543322 2367999999999863 45889999998 5
Q ss_pred CcceEEEeccCCCeEEEEEcCCCCEEEEEe------------------CCCeEEEEEcCCceeeEec-------cCCcee
Q 041916 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSG------------------KECKIKIWDLRKYEVLQTL-------PGHAKT 146 (359)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~------------------~d~~i~iwd~~~~~~~~~~-------~~~i~~ 146 (359)
...+..+..|--.-..+.+.|||..|+++. .+-++.+.|..+|+.+... .-++..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 566777776655567789999998887773 2345777788888877664 236899
Q ss_pred EEEcCCc-eEEEE-cC-------CcEEEEcCCCCCCccceeeccc---CCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 147 LDFSQKG-LLAVG-TG-------SFVQILGDFSGSHNYSRYMGHS---MVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 147 ~~~s~~g-l~~~~-~d-------~~i~i~d~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+++.++| ++.+. .. --|-+++... .+..+.... ..-...+-+|++++++.++++.+-.|
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG 238 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG 238 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence 9999999 33333 21 1345554221 122111100 00122689999999999887777655
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.2e-06 Score=76.12 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=67.4
Q ss_pred EEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 041916 13 HCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~ 89 (359)
..+..|... ..++|||..+ ++..++.+..|.|.|+.+..++.++..+ ..+++++|.-+. ++|++|..+|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 344455555 9999999876 7888999999999999999999999888 789999998876 67888999999999999
Q ss_pred CCC
Q 041916 90 TTA 92 (359)
Q Consensus 90 ~~~ 92 (359)
+..
T Consensus 266 R~~ 268 (463)
T KOG1645|consen 266 RQP 268 (463)
T ss_pred cCC
Confidence 864
No 317
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=9.1e-06 Score=74.53 Aligned_cols=109 Identities=8% Similarity=0.000 Sum_probs=74.6
Q ss_pred eEEEEEcCC-CCEEEEE----eCCCe----EEEEeCCCCcc--eEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916 63 TDVMRVNPF-NGVVSLG----HSGGT----VTMWKPTTAAP--LIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130 (359)
Q Consensus 63 v~~~~~sp~-~~~l~sg----~~dg~----v~lwd~~~~~~--~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd 130 (359)
..++.||-. ...+.+. +.+|. -++|++...+. +.. --..++.|.+.+++|+...++.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 356777753 3444432 33443 34566654432 111 125678899999999999999999999999999
Q ss_pred cCCceeeEec-cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 131 LRKYEVLQTL-PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 131 ~~~~~~~~~~-~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
...+.....- .-.++.++|+|+| +++++..|.+.+||+.-+
T Consensus 288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 9876433222 3356999999999 555556699999997654
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.54 E-value=2.1e-05 Score=72.48 Aligned_cols=207 Identities=16% Similarity=0.151 Sum_probs=122.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEE-EEEcC--CCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV-MRVNP--FNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-~~~sp--~~~~l~ 76 (359)
|+-+| .+|+.+........+ .+.... +..++.++.++.|.-+|..+|+.+..+......+.. ..-+| .+..++
T Consensus 132 l~ald~~tG~~~W~~~~~~~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~ 209 (394)
T PRK11138 132 VYALNAEDGEVAWQTKVAGEALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAI 209 (394)
T ss_pred EEEEECCCCCCcccccCCCceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEE
Confidence 45566 677776665544433 222222 345666778899999999999998887643211100 00122 134567
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCC-------CeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEecc-CCcee
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQG-------PVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLP-GHAKT 146 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~-------~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i~~ 146 (359)
.++.+|.+..+|..+++.+........ ....+..+| .+..++.++.++.+..+|+.+++.+.... +....
T Consensus 210 ~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~ 289 (394)
T PRK11138 210 VGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVND 289 (394)
T ss_pred EEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccC
Confidence 788899999999999887665431110 011112233 35577778889999999999998776552 22223
Q ss_pred EEEcCCceEEEEcCCcEEEEcCCCCCCcccee-ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 147 LDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 147 ~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
+....+.+++++.+|.+..+|..++......- .... ...+... .+..|++++.+|.+..+....
T Consensus 290 ~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~~sp~v--~~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 290 FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-----LLTAPVL--YNGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-----cccCCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 33332237888889999999987763222111 1111 1222222 256778888888777666544
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=7.5e-07 Score=84.21 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=91.3
Q ss_pred CCCe-EEEEEecCCCEEEEEec----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916 18 HGAV-LKLQFLRNHFLLASINK----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 18 h~~~-~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~ 92 (359)
..++ +-.+|+|...++|+++. .|+|.||- ++|++...+.. .-.+++++|+|..-.|+.|-.-|.+.+|..++.
T Consensus 14 sdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 14 SDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCc
Confidence 3445 77899999999988764 58888886 56765443321 123567999999889999999999999998877
Q ss_pred cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916 93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR 132 (359)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~ 132 (359)
+.-.....|+.+|..+.|||+|..|+++..-|.|.+|...
T Consensus 92 e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 6655566899999999999999999999999999999765
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.50 E-value=2.9e-06 Score=71.49 Aligned_cols=187 Identities=12% Similarity=0.149 Sum_probs=118.5
Q ss_pred eEEEEEecCC--CEEEEEecCCeEEEEECCCCe-------------------EEE-----------------------EE
Q 041916 21 VLKLQFLRNH--FLLASINKFGQLRYQDVTMGE-------------------IVG-----------------------NF 56 (359)
Q Consensus 21 ~~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~-------------------~~~-----------------------~~ 56 (359)
+..+.|..++ ..++..+.|.+|++|.+.... ++. .+
T Consensus 88 in~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy 167 (460)
T COG5170 88 INAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY 167 (460)
T ss_pred hhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec
Confidence 3667776653 445556789999999875320 000 01
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---eEEEeccC-----CCeEEEEEcCC-CCEEEEEeCCCeE
Q 041916 57 -RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP---LIKMLCHQ-----GPVSALAFHPN-GHLMATSGKECKI 126 (359)
Q Consensus 57 -~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~---~~~~~~h~-----~~v~~i~~~~~-~~~l~~~~~d~~i 126 (359)
..|.-.++++.|+.|...++++ .|-.|.+|++.-... +.-+..|. ..|++..|+|. .+.+...+..|.|
T Consensus 168 aNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 168 ANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred cccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 2466678899999888777765 667899999764322 23333443 35789999994 4455556677999
Q ss_pred EEEEcCCceee----Eec---------------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCC--
Q 041916 127 KIWDLRKYEVL----QTL---------------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV-- 184 (359)
Q Consensus 127 ~iwd~~~~~~~----~~~---------------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-- 184 (359)
++-|+|..... ..+ ...|..+.|+|+| ++.+-.--+|.|||......++.++..|...
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~ 326 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMD 326 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHH
Confidence 99999953221 111 2357889999999 5555455899999988777777766544210
Q ss_pred ------CCcce---EEEEEeeCCCEEEEEcCCC
Q 041916 185 ------KGYQI---GKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 185 ------~~~~v---~~~~~~p~~~~l~~~~~dg 208 (359)
....| ..+.|+.+...+.+|+...
T Consensus 327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~N 359 (460)
T COG5170 327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSN 359 (460)
T ss_pred HHHhhhhccceeeeEEEEecCCccccccccccc
Confidence 00112 3356666666666655544
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.1e-06 Score=78.38 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=116.6
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEecc
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH 101 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h 101 (359)
.|++++ +.+|+.|+.+|.|++++.. |.+ .+...|... ..+|.++++||.||+|.|-.+-+.....++. .
T Consensus 43 s~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f 111 (846)
T KOG2066|consen 43 SCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-F 111 (846)
T ss_pred HHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-c
Confidence 455553 5789999999999999976 444 333344333 5679999999999999999988887766665 3
Q ss_pred CCCeEEEEEcCC-----CCEEEEEeCCCeEEEEEcCC---cee--eEeccCCceeEEEcCCceEEEEcCCcEEEEcCCCC
Q 041916 102 QGPVSALAFHPN-----GHLMATSGKECKIKIWDLRK---YEV--LQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 102 ~~~v~~i~~~~~-----~~~l~~~~~d~~i~iwd~~~---~~~--~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~ 171 (359)
..++.+|+++|+ .+.+++||.-| +.++.-+- ... .....|+|.++.|.-+ +++-..|--|+|||+.+.
T Consensus 112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-lIAWand~Gv~vyd~~~~ 189 (846)
T KOG2066|consen 112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-LIAWANDDGVKVYDTPTR 189 (846)
T ss_pred CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCc-EEEEecCCCcEEEecccc
Confidence 567999999996 56789998888 77775432 112 3334789999999855 777777888999997665
Q ss_pred CCccceeeccc-CCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 172 SHNYSRYMGHS-MVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
......-..+. ..+......+.|.++. .|+.|-.|.
T Consensus 190 ~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~ 226 (846)
T KOG2066|consen 190 QRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDS 226 (846)
T ss_pred ceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCe
Confidence 32222111111 1122234557777654 445554443
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=6e-06 Score=71.92 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=102.7
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC-CCEEEE
Q 041916 42 LRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN-GHLMAT 119 (359)
Q Consensus 42 i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~~ 119 (359)
+++.+..+.+...-+..+...|..++|||.+. ++..++.+..|.|.|+.+...+..+..| ..+++++|+-| .++|+.
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 45555555555555667778899999999886 7889999999999999999888888887 78999999875 456888
Q ss_pred EeCCCeEEEEEcCCce-eeEec-----cCCceeEEE------cCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCC
Q 041916 120 SGKECKIKIWDLRKYE-VLQTL-----PGHAKTLDF------SQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKG 186 (359)
Q Consensus 120 ~~~d~~i~iwd~~~~~-~~~~~-----~~~i~~~~~------s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 186 (359)
|-..|.|.+||+|..+ ++..+ ..+|..++. .+.| +++++. -.+.+|..............-. +.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlele--~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLELE--PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCcccccC--CC
Confidence 8899999999999743 23232 223333332 2333 555543 2456676543322221111110 22
Q ss_pred cceEEEEEeeCCCEEEE
Q 041916 187 YQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 187 ~~v~~~~~~p~~~~l~~ 203 (359)
+.+.++++++..+.++.
T Consensus 331 G~cismqy~~~snh~l~ 347 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLL 347 (463)
T ss_pred cceeeeeecCccceEEE
Confidence 25667777775554433
No 323
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.43 E-value=1.6e-05 Score=73.37 Aligned_cols=187 Identities=13% Similarity=0.026 Sum_probs=105.2
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
+..++++|+|+++++++ ||...|+.......... +.....+|.+.+ .+|+-..+++|.++.--.......+..
T Consensus 35 p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp -SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT-----
T ss_pred CeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC
Confidence 49999999999998865 77888888554443221 345678899855 466666688899963222223223322
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC-ceeEEEcCCc-eEEEEcCCcEEEEcCCCC-------
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH-AKTLDFSQKG-LLAVGTGSFVQILGDFSG------- 171 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-i~~~~~s~~g-l~~~~~d~~i~i~d~~~~------- 171 (359)
+..+..|-. |.+|+..+.+ .|.+||+.+++.+..+.-. |..+.||++| +++...+..+.|++....
T Consensus 108 -~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~ 182 (443)
T PF04053_consen 108 -PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPE 182 (443)
T ss_dssp -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTT
T ss_pred -CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccc
Confidence 123444433 7777777654 8999999999999999654 7999999999 777777888888763211
Q ss_pred --C-CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 172 --S-HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 172 --~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
- .....+.... ..|.+.+|..+ .++..+.. .+.. ..++.-+.+...+.
T Consensus 183 ~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~-~lkY-l~~Ge~~~i~~ld~ 233 (443)
T PF04053_consen 183 EGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSN-HLKY-LVNGETGIIAHLDK 233 (443)
T ss_dssp TB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE-EETTEEEEEEE-SS
T ss_pred cCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCC-eEEE-EEcCCcceEEEcCC
Confidence 0 0222222212 27999999976 55555555 6666 44555566665554
No 324
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.41 E-value=7.7e-05 Score=70.22 Aligned_cols=161 Identities=11% Similarity=0.005 Sum_probs=99.1
Q ss_pred EEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecC----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 3 YIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKF----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
.+.| .+.+...++.-...+..++++|+|.++++.+.+ .++...+..+...+..+... .+ -++.++|++...
T Consensus 218 SvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V 293 (635)
T PRK02888 218 TAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI 293 (635)
T ss_pred EEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE
Confidence 3445 444455555555555677888999888777532 22333332222111111110 00 123446766555
Q ss_pred EeCCCeEEEEeCCC----C-cceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCcee------------eEe
Q 041916 78 GHSGGTVTMWKPTT----A-APLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEV------------LQT 139 (359)
Q Consensus 78 g~~dg~v~lwd~~~----~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~------------~~~ 139 (359)
.++.|.+.|..+ + ..+..+.. ......+.++|||+++++++ .+.+|.++|+.+.+. +.+
T Consensus 294 --~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 294 --GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred --CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 357899999988 3 34444443 34468899999999987766 488999999987542 222
Q ss_pred c--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916 140 L--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 140 ~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~ 170 (359)
. .-.....+|+++| +.+.-.|+.|..||+..
T Consensus 371 vevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2 1234678899998 66667899999999765
No 325
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.40 E-value=1.1e-05 Score=74.03 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=93.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEe-cCC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASIN-KFG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+++++ .+|.....+. ..+. ...+|+|||+.|+.+. .|| .|.++|+.++. +..+....+.-..-.|+|||+.|+
T Consensus 220 i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 220 IYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred EEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEE
Confidence 56777 5555433333 2223 6678999998776554 444 56677777666 334554444445778999998877
Q ss_pred EEeC-CCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-Ce--EEEEEcCCceeeEec--cCCceeEE
Q 041916 77 LGHS-GGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-CK--IKIWDLRKYEVLQTL--PGHAKTLD 148 (359)
Q Consensus 77 sg~~-dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~--~~~i~~~~ 148 (359)
..+. .|. |.++++..... ..+....+.-....|+|||.+|+..+.. |. |.+.|+.++.-.+.+ .......+
T Consensus 298 f~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps 376 (425)
T COG0823 298 FTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPS 376 (425)
T ss_pred EEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCC
Confidence 6653 443 66667765544 3333233333378899999999888753 43 777777665545555 23445677
Q ss_pred EcCCc
Q 041916 149 FSQKG 153 (359)
Q Consensus 149 ~s~~g 153 (359)
|.|+|
T Consensus 377 ~~~ng 381 (425)
T COG0823 377 WAPNG 381 (425)
T ss_pred cCCCC
Confidence 88888
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.39 E-value=1.5e-07 Score=86.34 Aligned_cols=194 Identities=10% Similarity=0.084 Sum_probs=128.1
Q ss_pred CeEEEEEecC--CCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEe----CCCeEEEEeCC
Q 041916 20 AVLKLQFLRN--HFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNP-FNGVVSLGH----SGGTVTMWKPT 90 (359)
Q Consensus 20 ~~~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp-~~~~l~sg~----~dg~v~lwd~~ 90 (359)
.+.|+++.-+ ..+++.|..+|.|.+-.+....- -.....+..++++++|++ |.+.||+|- .|..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3466666543 35789999999999998865332 233456778999999998 456777764 46779999998
Q ss_pred CC--cceEE--Eec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec-cCCceeEEEcC-Cc-eEEEEcCC
Q 041916 91 TA--APLIK--MLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL-PGHAKTLDFSQ-KG-LLAVGTGS 161 (359)
Q Consensus 91 ~~--~~~~~--~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~-~~~i~~~~~s~-~g-l~~~~~d~ 161 (359)
++ .|... |.+ ......+++|..+.+++.+|.....+.++|+|.. ..+..+ ...+..+.++| .+ +++...||
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg 217 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDG 217 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccC
Confidence 76 33222 222 3345568999988888999998889999999943 223333 34677888888 44 88888899
Q ss_pred cEEEEcC-CCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCC-CeEEEE
Q 041916 162 FVQILGD-FSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSM-GWSSIL 213 (359)
Q Consensus 162 ~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~d-g~~~i~ 213 (359)
.|.+||. ..-..++..+..........+..++|+|... .+++.+.| +++..+
T Consensus 218 ~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly 272 (783)
T KOG1008|consen 218 DIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY 272 (783)
T ss_pred ceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence 9999993 3333344433332221122589999999754 33343333 444443
No 327
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.38 E-value=8.1e-05 Score=68.59 Aligned_cols=200 Identities=15% Similarity=0.070 Sum_probs=118.5
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEE--EEec--CCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-------CeEEEEEc
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKL--QFLR--NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-------RTDVMRVN 69 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l--~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~s 69 (359)
|+-+| .+|+.+..+........+ .-+| .+..++.++.+|.+..+|..+|+.+........ ....+..+
T Consensus 172 l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 172 LQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred EEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 56677 778877666543211100 0122 123566677899999999999987766542110 01111122
Q ss_pred C--CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---C-C
Q 041916 70 P--FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---G-H 143 (359)
Q Consensus 70 p--~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~-~ 143 (359)
| .+..++.++.+|.+..+|+.+++.+..... +....+.. .+..++.++.+|.+..+|..+++.+...+ . .
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~ 327 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL 327 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc
Confidence 2 245677778899999999999987665431 11122222 46678888899999999999998765442 1 1
Q ss_pred ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceE-EEEEeeCCCEEEEEcCCCeEEEE
Q 041916 144 AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIG-KVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 144 i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
..+..+. ++ +++++.+|.|.++|..++ +.+....... ..+. +..+ .+..|++++.+|.+..+
T Consensus 328 ~~sp~v~-~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~~~----~~~~s~P~~--~~~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 328 LTAPVLY-NGYLVVGDSEGYLHWINREDG-RFVAQQKVDS----SGFLSEPVV--ADDKLLIQARDGTVYAI 391 (394)
T ss_pred ccCCEEE-CCEEEEEeCCCEEEEEECCCC-CEEEEEEcCC----CcceeCCEE--ECCEEEEEeCCceEEEE
Confidence 2333332 44 888888999999998776 4433332211 1222 1222 24567777888755443
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=6.3e-06 Score=72.80 Aligned_cols=201 Identities=14% Similarity=0.077 Sum_probs=134.7
Q ss_pred CCCeEEEEEecCCCEEEEEecCCeEEEEECCC--C-eEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCc
Q 041916 18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTM--G-EIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-GGTVTMWKPTTAA 93 (359)
Q Consensus 18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~ 93 (359)
|.++-.-.|..-..++.+++.||+++.|--.. | +.+..+..|.+.+.+++.+-++.++.+++. |..++++|+.+-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 55552223334467899999999999998654 2 345567789999999999999999999887 9999999987654
Q ss_pred ceEE--EeccCCCeEEEEEcCC-CC-EEEE-EeCCCeEEEEEcCCcee-eEec----cCCceeEEEcCCc--eEEEEcCC
Q 041916 94 PLIK--MLCHQGPVSALAFHPN-GH-LMAT-SGKECKIKIWDLRKYEV-LQTL----PGHAKTLDFSQKG--LLAVGTGS 161 (359)
Q Consensus 94 ~~~~--~~~h~~~v~~i~~~~~-~~-~l~~-~~~d~~i~iwd~~~~~~-~~~~----~~~i~~~~~s~~g--l~~~~~d~ 161 (359)
.+.. +.--++.+..+. +|. -. .+++ .-.++.|.++|-+...+ ...+ ..+|.++.++|.+ +++....|
T Consensus 88 minmiKL~~lPg~a~wv~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVT-SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred hhhhcccccCCCceEEec-CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 4322 222333333222 221 11 2333 33578999999886542 2222 5689999999988 66666779
Q ss_pred cEEEEcCCCCCCccce-----------eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCC
Q 041916 162 FVQILGDFSGSHNYSR-----------YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEP 220 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~ 220 (359)
.|.-|......+.... +.+... ......++.|+|+|..+.+-..|..+++++.-+++-
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 9999985421010000 111111 233678999999999999999999888888766654
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=7.6e-07 Score=84.62 Aligned_cols=149 Identities=13% Similarity=0.195 Sum_probs=110.7
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEE
Q 041916 52 IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--KIKIW 129 (359)
Q Consensus 52 ~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--~i~iw 129 (359)
...+|..|....+|++|+.+.+.|+.|+..|.|++|++.+|.......+|.++|+-+.=+.||..+++.+.-. ...+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 4556778888999999999999999999999999999999999999999999999998888999887766433 47799
Q ss_pred EcCC-ceeeEeccCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 130 DLRK-YEVLQTLPGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 130 d~~~-~~~~~~~~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
++.. +.+.++|.. -.++.|+... -+.++......+||+.++ .++.+|..........=+.+.|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e-d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE-DKAVKFSNSLQFRALGTEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc-cceeehhhhHHHHHhcccccceEEEecccC-cHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9875 556666643 3567777665 344444568899998887 444444332221222346677888776554
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=0.00046 Score=63.11 Aligned_cols=180 Identities=13% Similarity=0.169 Sum_probs=126.4
Q ss_pred EEEEEecCCCE-EEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCcceEE
Q 041916 22 LKLQFLRNHFL-LASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 22 ~~l~~s~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~~~~~~~ 97 (359)
..+++++.+.. .++...+..|.+.|..+........-.. ....++++|++..+..+.. ++++.+.|..+......
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 67888888774 4455556899999988777776665443 5678999999977766655 68999999988888777
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeE-e----c--cCCceeEEEcCCc--eEE-EEcC--CcEE
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQ-T----L--PGHAKTLDFSQKG--LLA-VGTG--SFVQ 164 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~-~----~--~~~i~~~~~s~~g--l~~-~~~d--~~i~ 164 (359)
...-..+ ..++++|+|..++.+. .++.|.+.|..+..... . . ......+.++|+| +++ ...+ +.+.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~ 234 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL 234 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence 5544445 8899999999776665 78899999987766553 1 1 2345788999999 333 3333 5888
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
..|..++......+... .. ....+.++|+|.++.+....
T Consensus 235 ~id~~~~~v~~~~~~~~---~~-~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 235 KIDTATGNVTATDLPVG---SG-APRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred EEeCCCceEEEeccccc---cC-CCCceeECCCCCEEEEEecC
Confidence 88866652111112211 11 35668899999988887655
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=6.9e-06 Score=76.49 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=87.5
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE-
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM- 98 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~- 98 (359)
+.--+++..+.+++.|+..|.|++|+-..+..... ..+..+.+..+..|++..++|.|+..|.|.++-++...+....
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 43345566789999999999999999776653322 2224456677788999999999999999999988765432211
Q ss_pred -----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916 99 -----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 99 -----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
..|...|++++|++++..+++|...|+|.+--+.+
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 14778999999999999999999999999887766
No 332
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=5.4e-06 Score=73.19 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=132.1
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCCCCeEEEEE-cCCC---CEEEE-EeCCCeE
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGLGRTDVMRV-NPFN---GVVSL-GHSGGTV 84 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-sp~~---~~l~s-g~~dg~v 84 (359)
+..+..|..+ .+++.+-+|.+++|++. |..++++|+.+-..+.-++...-| ..+.| ...| ..|++ .-.+|.+
T Consensus 46 VKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKI 124 (558)
T ss_pred hhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCc
Confidence 4566778887 88999999999999887 999999999876554433322111 11222 2223 23433 3467899
Q ss_pred EEEeCCCCc-c-eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-c-----eeeE---------ec---cCCc
Q 041916 85 TMWKPTTAA-P-LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-Y-----EVLQ---------TL---PGHA 144 (359)
Q Consensus 85 ~lwd~~~~~-~-~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~-----~~~~---------~~---~~~i 144 (359)
.++|-.... + ...-.-|..+|..+.++|.+..+++....|.|..|.... . .... .+ .+..
T Consensus 125 ~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 125 FVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred EEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence 999976543 2 233346899999999999999999999899999998862 1 1111 11 3457
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee--------------------------------ecccCCCCcceE
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY--------------------------------MGHSMVKGYQIG 190 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~--------------------------------~~~~~~~~~~v~ 190 (359)
.++.|+|+| +...+.|..|++++..++ ...+.+ ..| ....-+
T Consensus 205 ts~Efsp~g~qistl~~DrkVR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~---~~~~~~ 280 (558)
T KOG0882|consen 205 TSFEFSPDGAQISTLNPDRKVRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH---GSTVGT 280 (558)
T ss_pred cceEEccccCcccccCcccEEEEEEeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh---cCcccc
Confidence 999999999 666778999999987665 222111 111 122446
Q ss_pred EEEEeeCCCEEEEEcCCCe
Q 041916 191 KVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 191 ~~~~~p~~~~l~~~~~dg~ 209 (359)
.++|...|.+|+.|+.=|.
T Consensus 281 ~~~fdes~~flly~t~~gi 299 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILGI 299 (558)
T ss_pred eeEEcCCCCEEEeecceeE
Confidence 7889999999998887774
No 333
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00097 Score=61.02 Aligned_cols=193 Identities=12% Similarity=0.089 Sum_probs=128.1
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|.+.| .+....+.+.-...+..++++|++..+..+.. ++++.+.|..++...........+ ..++++|+|..++.
T Consensus 98 v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv 176 (381)
T COG3391 98 VSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYV 176 (381)
T ss_pred EEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEE
Confidence 44555 44445555554445689999999977776655 689999999999888876655445 89999999986555
Q ss_pred E-eCCCeEEEEeCCCCcceE-----EEeccCCCeEEEEEcCCCCEEEEEeCC---CeEEEEEcCCceeeEe-c--cC-Cc
Q 041916 78 G-HSGGTVTMWKPTTAAPLI-----KMLCHQGPVSALAFHPNGHLMATSGKE---CKIKIWDLRKYEVLQT-L--PG-HA 144 (359)
Q Consensus 78 g-~~dg~v~lwd~~~~~~~~-----~~~~h~~~v~~i~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~-~--~~-~i 144 (359)
. ..++.|.+.|........ .+..... -..+.++|+|.++++.... +.+...|..++..... . .. ..
T Consensus 177 ~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~-P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~ 255 (381)
T COG3391 177 TNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTG-PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAP 255 (381)
T ss_pred EecCCCeEEEEeCCCcceeccccccccccCCC-CceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCC
Confidence 5 478899999976554332 1222222 2568999999987766544 5999999998876655 2 22 46
Q ss_pred eeEEEcCCc--eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916 145 KTLDFSQKG--LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 145 ~~~~~s~~g--l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
..+..+|+| +.+. +..+.+.+.|..+. ........... ....+..+++.+..
T Consensus 256 ~~v~~~p~g~~~yv~~~~~~~V~vid~~~~-~v~~~~~~~~~-~~~~~~~~~~~~~~ 310 (381)
T COG3391 256 RGVAVDPAGKAAYVANSQGGTVSVIDGATD-RVVKTGPTGNE-ALGEPVSIAISPLY 310 (381)
T ss_pred CceeECCCCCEEEEEecCCCeEEEEeCCCC-ceeeeeccccc-ccccceeccceeec
Confidence 788999999 3333 44589999986654 23222222211 12235566666654
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.22 E-value=0.00062 Score=57.79 Aligned_cols=188 Identities=12% Similarity=0.095 Sum_probs=106.4
Q ss_pred EeccCC-CeEEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 14 CLKEHG-AVLKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 14 ~l~~h~-~~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
.+.+-. .+.+++|+|+. .++++....+.|..++. +|+.+..+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344433 36999999975 56677778899999997 48888877643 3567889998888777766678999999884
Q ss_pred CCc---c---eEEEe-----ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec-----------cCCce
Q 041916 91 TAA---P---LIKML-----CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL-----------PGHAK 145 (359)
Q Consensus 91 ~~~---~---~~~~~-----~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~-----------~~~i~ 145 (359)
... . ...+. .+...+-.++|+|.++.|+++-...-..+|.+.. ...+... -..++
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 12222 2344589999999888888877776666776653 1111111 13468
Q ss_pred eEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCC-----CCcceEEEEEeeCCCEEEEE
Q 041916 146 TLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMV-----KGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 146 ~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~ 204 (359)
+++++|.. +++.+ .+..|..+| ..+ .++..+.-..+. .-.....|+|.++|++.+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G-~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQG-RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCC-CEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 99999976 55555 456788888 444 333322211100 11257889999999655543
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.21 E-value=0.00063 Score=61.66 Aligned_cols=193 Identities=11% Similarity=0.149 Sum_probs=107.1
Q ss_pred eEEEe-CCCcEEEEeccC-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-----------------CCC
Q 041916 2 PYIYN-RDGTELHCLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-----------------LGR 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~ 62 (359)
++||| .+++. ..+... .......|||+|+.+|... ++.|.+++..++...+.-... -+.
T Consensus 25 y~i~d~~~~~~-~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~ 102 (353)
T PF00930_consen 25 YYIYDIETGEI-TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDR 102 (353)
T ss_dssp EEEEETTTTEE-EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSS
T ss_pred EEEEecCCCce-EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccccccc
Confidence 57888 55444 444433 3348899999999998876 678999998877543322111 122
Q ss_pred eEEEEEcCCCCEEEEEeCCC------------------------------------eEEEEeCCCCcceE-EEe----cc
Q 041916 63 TDVMRVNPFNGVVSLGHSGG------------------------------------TVTMWKPTTAAPLI-KML----CH 101 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg------------------------------------~v~lwd~~~~~~~~-~~~----~h 101 (359)
-..+.||||+++|+....|- .+.|+|+.+++... ... .-
T Consensus 103 ~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~ 182 (353)
T PF00930_consen 103 RSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ 182 (353)
T ss_dssp SBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred ccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence 35788999999888754321 24445665554321 111 22
Q ss_pred CCCeEEEEEcCCCCEEEEE--eCCC---eEEEEEcCCceeeEec----cCCc---eeEEEc-CCc---eEEEEcCC--cE
Q 041916 102 QGPVSALAFHPNGHLMATS--GKEC---KIKIWDLRKYEVLQTL----PGHA---KTLDFS-QKG---LLAVGTGS--FV 163 (359)
Q Consensus 102 ~~~v~~i~~~~~~~~l~~~--~~d~---~i~iwd~~~~~~~~~~----~~~i---~~~~~s-~~g---l~~~~~d~--~i 163 (359)
...+..+.|.+++..|+.. +.+. .+.++|..++.+...+ .+.+ ..+.|. +++ +.....+| +|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 3457889999998844433 3332 5777888776543222 3333 455555 666 44444666 55
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEE-EEEeeCCCEEE
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGK-VSFRPYEDVLG 202 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~ 202 (359)
.+++...+ ....+.... ..|.. +.|+++++.|.
T Consensus 263 y~~~~~~~--~~~~lT~G~----~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 263 YLYDLDGG--KPRQLTSGD----WEVTSILGWDEDNNRIY 296 (353)
T ss_dssp EEEETTSS--EEEESS-SS----S-EEEEEEEECTSSEEE
T ss_pred EEEccccc--ceeccccCc----eeecccceEcCCCCEEE
Confidence 66664333 223333222 25644 67788776543
No 336
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.17 E-value=0.0012 Score=58.95 Aligned_cols=206 Identities=11% Similarity=0.121 Sum_probs=118.6
Q ss_pred CeEEEe-CCCcEEEEec--cCCCeEEEEEec---C----CCEEEEEec---------C-CeEEEEECCCC-----e--EE
Q 041916 1 YPYIYN-RDGTELHCLK--EHGAVLKLQFLR---N----HFLLASINK---------F-GQLRYQDVTMG-----E--IV 53 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~--~h~~~~~l~~s~---~----~~~l~s~~~---------d-g~i~iwd~~~~-----~--~~ 53 (359)
+|+|+| .+.+.+..+. ....+.+++... + ..+|++|.. . |.|.++++... + .+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 378899 6777766554 444445554432 2 467777754 2 89999999884 2 22
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916 54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDL 131 (359)
Q Consensus 54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~ 131 (359)
... ...++|++++-. .+ .|+++. ++.|.+|++...+.+..... ....+.++... ++++++|.....+.++..
T Consensus 83 ~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 222 246789888765 33 444443 47899999987772332222 23356666554 569999988888887754
Q ss_pred CC-ceeeEec-----cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC------CC-cccee-ecccCCCCcceEEE---
Q 041916 132 RK-YEVLQTL-----PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG------SH-NYSRY-MGHSMVKGYQIGKV--- 192 (359)
Q Consensus 132 ~~-~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~------~~-~~~~~-~~~~~~~~~~v~~~--- 192 (359)
.. ...+..+ +..++++.+-+++ ++++..+|.+.++..... .. .+... .-| .+..|+++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~ 233 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRG 233 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEE
Confidence 43 2222222 3357888887555 777778899999875421 11 11211 122 33467777
Q ss_pred EEeeC--CC------EEEEEcCCCeEEEEEc
Q 041916 193 SFRPY--ED------VLGIGHSMGWSSILVP 215 (359)
Q Consensus 193 ~~~p~--~~------~l~~~~~dg~~~i~~~ 215 (359)
++.|. +. .++.++.+|.+..+.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 54552 22 3777778887776665
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.00037 Score=66.75 Aligned_cols=143 Identities=13% Similarity=0.115 Sum_probs=96.0
Q ss_pred cCCCEEEEEecCC-----eEEEEECCCC------eEEE--EEec-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 28 RNHFLLASINKFG-----QLRYQDVTMG------EIVG--NFRT-----GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 28 ~~~~~l~s~~~dg-----~i~iwd~~~~------~~~~--~~~~-----~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
.+.++|++.+.|+ .|+|||+..- .++. .+.+ ...++.+++.+.+-..+|+|-.||.|.++.-
T Consensus 75 ~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G 154 (933)
T KOG2114|consen 75 NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG 154 (933)
T ss_pred cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC
Confidence 3446788776654 5899998632 3441 1222 3457889999999899999999999999852
Q ss_pred C---C-CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcCCc-eEEEEcC
Q 041916 90 T---T-AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQKG-LLAVGTG 160 (359)
Q Consensus 90 ~---~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~~g-l~~~~~d 160 (359)
+ . +....-.....++|+.+++..++..++.+.....|.+|.+....+... + ..+..|.++++.. -+.++.+
T Consensus 155 Di~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~ 234 (933)
T KOG2114|consen 155 DILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS 234 (933)
T ss_pred cchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC
Confidence 2 1 111111223467999999998888733333345799999985443333 3 3367888888876 4666778
Q ss_pred CcEEEEcCCC
Q 041916 161 SFVQILGDFS 170 (359)
Q Consensus 161 ~~i~i~d~~~ 170 (359)
..|.+|+...
T Consensus 235 e~l~fY~sd~ 244 (933)
T KOG2114|consen 235 EFLYFYDSDG 244 (933)
T ss_pred ceEEEEcCCC
Confidence 8999999543
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.14 E-value=0.0011 Score=56.36 Aligned_cols=164 Identities=17% Similarity=0.215 Sum_probs=97.6
Q ss_pred eEEEeCCCcEEEEec--cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe------EEEEEe-----cCCCCeEEEEE
Q 041916 2 PYIYNRDGTELHCLK--EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE------IVGNFR-----TGLGRTDVMRV 68 (359)
Q Consensus 2 v~iwd~~g~~~~~l~--~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-----~~~~~v~~~~~ 68 (359)
|+.++.+|+.+..+. +..+.-.+++..++.++++.-.++.+.++++.... .+..+. .++..+-.++|
T Consensus 46 i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~ 125 (248)
T PF06977_consen 46 IYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAY 125 (248)
T ss_dssp EEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEE
T ss_pred EEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEE
Confidence 455667787776654 44566899999888888777678999999984321 112222 24456889999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCC---CcceEEE--e------ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCcee
Q 041916 69 NPFNGVVSLGHSGGTVTMWKPTT---AAPLIKM--L------CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEV 136 (359)
Q Consensus 69 sp~~~~l~sg~~dg~v~lwd~~~---~~~~~~~--~------~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~ 136 (359)
+|.++.|+.+-......+|.++. ...+... . .....+.+++++|. |++++.+..+..|..+| ..|++
T Consensus 126 D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~ 204 (248)
T PF06977_consen 126 DPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRV 204 (248)
T ss_dssp ETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--E
T ss_pred cCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCE
Confidence 99887777777766666776543 2111111 1 12345789999995 55667777788999999 66777
Q ss_pred eEec--cC----------CceeEEEcCCc-eEEEEcCCcEEEE
Q 041916 137 LQTL--PG----------HAKTLDFSQKG-LLAVGTGSFVQIL 166 (359)
Q Consensus 137 ~~~~--~~----------~i~~~~~s~~g-l~~~~~d~~i~i~ 166 (359)
+..+ .. ..-.|+|.++| ++.++.-+..++|
T Consensus 205 ~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 205 VSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp EEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred EEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 6655 21 35789999999 8888877766655
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.12 E-value=0.0013 Score=58.60 Aligned_cols=195 Identities=14% Similarity=0.061 Sum_probs=104.4
Q ss_pred CCCcEEEEeccCCCe-EEE-----EEecCCCEEEEEec---CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 7 RDGTELHCLKEHGAV-LKL-----QFLRNHFLLASINK---FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 7 ~~g~~~~~l~~h~~~-~~l-----~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
.+|..+..|...... ..+ +|.+||+.|+.++. ...+.+.|+.+++..+.-.+.........++|+.+.++-
T Consensus 18 ~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 18 DTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp TT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 789999988876664 444 56778876665554 456788888888765544433233335667788888776
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEc--CCCCEEEEEeC----------------------CCeEEEEEcCC
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH--PNGHLMATSGK----------------------ECKIKIWDLRK 133 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~--~~~~~l~~~~~----------------------d~~i~iwd~~~ 133 (359)
...+..|.-.|+.+.+....+....+.+-...|. .|+..++-.-. ...|...|+.+
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t 177 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT 177 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence 6666788999999987666666666666556664 46666544311 13466678888
Q ss_pred ceeeEec--cCCceeEEEcCCc--eEEEEcCC-----cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 134 YEVLQTL--PGHAKTLDFSQKG--LLAVGTGS-----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 134 ~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
|+....+ ...+..+.|||.. +++-|..| .-+||-+.+.+.....+..+. .+..+..=-|.|+|..|..
T Consensus 178 G~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~--~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 178 GERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM--EGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp --EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-----TTEEEEEEEE-TTSS-EEE
T ss_pred CceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC--CCcccccccccCCCCEEEE
Confidence 7765555 5567899999987 66665432 236676555544444444442 3445666678999987654
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.11 E-value=0.0013 Score=62.41 Aligned_cols=217 Identities=12% Similarity=0.110 Sum_probs=120.4
Q ss_pred eEEEe-CCCcEEEEeccCCC--e-EEEEEec--CCCEEEEEe---------cCCeEEEEECCCCeEEEEEecCCCC----
Q 041916 2 PYIYN-RDGTELHCLKEHGA--V-LKLQFLR--NHFLLASIN---------KFGQLRYQDVTMGEIVGNFRTGLGR---- 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~--~-~~l~~s~--~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~---- 62 (359)
|+-+| .+|+++-.+..... . ..+.-+| .+.+++.++ .+|.|..+|..+|+.+..+......
T Consensus 122 v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~ 201 (488)
T cd00216 122 LVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAF 201 (488)
T ss_pred EEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCC
Confidence 45567 67887766654433 1 1111122 123444443 3688999999999998887642110
Q ss_pred ----------------e-EEEEEcCCCCEEEEEeCCC------------------eEEEEeCCCCcceEEEeccCCCeE-
Q 041916 63 ----------------T-DVMRVNPFNGVVSLGHSGG------------------TVTMWKPTTAAPLIKMLCHQGPVS- 106 (359)
Q Consensus 63 ----------------v-~~~~~sp~~~~l~sg~~dg------------------~v~lwd~~~~~~~~~~~~h~~~v~- 106 (359)
+ ...+..+.+..++.++.++ .|.-+|+.+++.+..++.-.....
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~ 281 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWD 281 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcc
Confidence 0 1234444566777777665 799999999998877652111110
Q ss_pred -----EEEEc----CCCC---EEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCceEEEE----------------
Q 041916 107 -----ALAFH----PNGH---LMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVG---------------- 158 (359)
Q Consensus 107 -----~i~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~gl~~~~---------------- 158 (359)
...+. -+|. .++.++.+|.+...|..+|+.+.........++.+|+-+++.+
T Consensus 282 ~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~ 361 (488)
T cd00216 282 YDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDPGLVYLGAFHIPLGLPPQKKKRCK 361 (488)
T ss_pred cccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCCceEEEccccccccCcccccCCCC
Confidence 11111 1333 5778888999999999999988776322233445553233321
Q ss_pred --cCCcEEEEcCCCCCCccceeec-ccC--CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 159 --TGSFVQILGDFSGSHNYSRYMG-HSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 159 --~d~~i~i~d~~~~~~~~~~~~~-~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
.+|.|.-+|+.++......-.. +.. ..+.+...-.....+..|++++.+|.+..+...++
T Consensus 362 ~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 362 KPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 2467888887776332222111 000 00001111111234677888888887666665444
No 341
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.11 E-value=6.2e-07 Score=82.36 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=105.0
Q ss_pred cCCCe-EEEEEec-CCCEEEEEe----cCCeEEEEECCCC--eEE--EEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEE
Q 041916 17 EHGAV-LKLQFLR-NHFLLASIN----KFGQLRYQDVTMG--EIV--GNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVT 85 (359)
Q Consensus 17 ~h~~~-~~l~~s~-~~~~l~s~~----~dg~i~iwd~~~~--~~~--~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~ 85 (359)
+|... ++++|++ |.+.||.|- .|..+.|||+.++ .+. ..|.+ ......+++|-.+..++.+|.....+.
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 34455 8999988 567777763 3678999999876 222 22222 334567899998889999999999999
Q ss_pred EEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEE-cCCc-eeeEec-------cCCceeEEEcCCc--
Q 041916 86 MWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWD-LRKY-EVLQTL-------PGHAKTLDFSQKG-- 153 (359)
Q Consensus 86 lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd-~~~~-~~~~~~-------~~~i~~~~~s~~g-- 153 (359)
++|++.... .........+..+.++| .++|+++-. ||.|.+|| .++- .++..+ +..+..++|.|..
T Consensus 180 ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg 257 (783)
T KOG1008|consen 180 IFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG 257 (783)
T ss_pred hhhhhhhhh-hhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc
Confidence 999984321 11112233566788899 788887766 89999999 5543 233333 2347899999965
Q ss_pred -eEEEEcC-CcEEEEcCCC
Q 041916 154 -LLAVGTG-SFVQILGDFS 170 (359)
Q Consensus 154 -l~~~~~d-~~i~i~d~~~ 170 (359)
++++..| ++|+.||+..
T Consensus 258 lla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 258 LLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhhccCcceEEEecccc
Confidence 5555554 7999999753
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.7e-05 Score=73.01 Aligned_cols=92 Identities=12% Similarity=0.175 Sum_probs=79.4
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
.+..+.|+|.-.++|++..+|.|-+..+. .+.+.++..|..+++ +++|.|||+.||.|-.||+|.+-|+.++..+..+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 34789999999999999999999999988 788889988888888 9999999999999999999999999998877663
Q ss_pred e-ccCCCeEEEEEcC
Q 041916 99 L-CHQGPVSALAFHP 112 (359)
Q Consensus 99 ~-~h~~~v~~i~~~~ 112 (359)
. .-...|.++.|+|
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 2 3345688888864
No 343
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.08 E-value=0.0013 Score=54.67 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=98.4
Q ss_pred EEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccC
Q 041916 24 LQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ 102 (359)
Q Consensus 24 l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~ 102 (359)
+...+| ..+++.|+..+.+.--|..+|+....-... ..+-+-+.- -|.+++.|+..|.+++.+.++|.....+..-.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 334444 356778888999999999999877653321 222222221 36789999999999999999998887776433
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCc-eeEEEcC-Cc-eEEEEcCCcEEEE
Q 041916 103 GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHA-KTLDFSQ-KG-LLAVGTGSFVQIL 166 (359)
Q Consensus 103 ~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i-~~~~~s~-~g-l~~~~~d~~i~i~ 166 (359)
.-=......+++..++.++.|+..+..|.++..++... .+.+ .+.++.| ++ ++++...|.+.--
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlav 162 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAV 162 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEE
Confidence 22233456789999999999999999999999988876 3333 4455555 44 6666666554443
No 344
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=0.00067 Score=57.11 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=106.4
Q ss_pred eEEEe-CCCcEEEEeccCCCe---EEEEEecCCCEEEEEecC-----CeEEEEECCCC-eEEEEEecCCCCeEEEEEcCC
Q 041916 2 PYIYN-RDGTELHCLKEHGAV---LKLQFLRNHFLLASINKF-----GQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~---~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~ 71 (359)
-+++| .++.+..++....+- -.-.|||||.+|+..-+| |.|-|||.+.+ +.+..+.+|.-..+.+.|.+|
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~D 172 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMAD 172 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecC
Confidence 35778 566665555443332 345899999999876543 89999999854 456778888888899999999
Q ss_pred CCEEEEEeCC------------------CeEEEEeCCCCcceEEE--e--ccCCCeEEEEEcCCCCEEEEEeCCCe----
Q 041916 72 NGVVSLGHSG------------------GTVTMWKPTTAAPLIKM--L--CHQGPVSALAFHPNGHLMATSGKECK---- 125 (359)
Q Consensus 72 ~~~l~sg~~d------------------g~v~lwd~~~~~~~~~~--~--~h~~~v~~i~~~~~~~~l~~~~~d~~---- 125 (359)
|+.++.+... -++.+.|..++..+.+. . -+.-.|+.++..+||..++.|-..|.
T Consensus 173 GrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ 252 (366)
T COG3490 173 GRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDL 252 (366)
T ss_pred CcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccC
Confidence 9998876421 12334444444433321 1 23446788888888877766644331
Q ss_pred -EEEEEcCCceeeEec----------cCCceeEEEcCCc-eEEEE--cCCcEEEEcCCCCC
Q 041916 126 -IKIWDLRKYEVLQTL----------PGHAKTLDFSQKG-LLAVG--TGSFVQILGDFSGS 172 (359)
Q Consensus 126 -i~iwd~~~~~~~~~~----------~~~i~~~~~s~~g-l~~~~--~d~~i~i~d~~~~~ 172 (359)
-.+=-.+.++++.-+ ...|-+++.+.+. +++.+ .++...+||..++.
T Consensus 253 ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 253 PPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred CcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 111112233443333 2356788887654 44443 46788899988773
No 345
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.07 E-value=0.0025 Score=56.02 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=97.3
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCCCc
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNPFNGVVSLGHS-----------GGTVTMWKPTTAA 93 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~sg~~-----------dg~v~lwd~~~~~ 93 (359)
+..|+++. .-+.+++..++.....+.. .....+.+...|+|.+.+.... -|.|+.+|+ .+.
T Consensus 77 ~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~ 153 (307)
T COG3386 77 GGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGG 153 (307)
T ss_pred CCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCC
Confidence 33444443 3467777766655333321 1235678888999987775443 144555554 454
Q ss_pred ceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCC--c----ee-eEec---cCCceeEEEcCCc-eEEEE-cC
Q 041916 94 PLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRK--Y----EV-LQTL---PGHAKTLDFSQKG-LLAVG-TG 160 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~--~----~~-~~~~---~~~i~~~~~s~~g-l~~~~-~d 160 (359)
.+..+..+-..-+.|+||||++.|+.+-. .+.|.-|++.. + .. ...+ ++..-.++...+| +.+++ .+
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 45544454455678999999988777654 47888887752 1 11 1111 3566788888888 55333 33
Q ss_pred -CcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEE
Q 041916 161 -SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVL 201 (359)
Q Consensus 161 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l 201 (359)
+.|.+|+.. + ..+..+.-... .+++++|-- +.+.|
T Consensus 234 g~~v~~~~pd-G-~l~~~i~lP~~----~~t~~~FgG~~~~~L 270 (307)
T COG3386 234 GGRVVRFNPD-G-KLLGEIKLPVK----RPTNPAFGGPDLNTL 270 (307)
T ss_pred CceEEEECCC-C-cEEEEEECCCC----CCccceEeCCCcCEE
Confidence 399999965 4 45555544422 678888864 34443
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.07 E-value=0.00027 Score=64.10 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=61.6
Q ss_pred ecCCCEEEEEe---------cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916 27 LRNHFLLASIN---------KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 27 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
|||+++++... ..+.+.++|+.+++....... ...+....|||+|+.++... ++.|.++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67887776632 246899999999765443332 56788999999999988875 57899999876643221
Q ss_pred -Eec-------c---------CCCeEEEEEcCCCCEEEEEe
Q 041916 98 -MLC-------H---------QGPVSALAFHPNGHLMATSG 121 (359)
Q Consensus 98 -~~~-------h---------~~~v~~i~~~~~~~~l~~~~ 121 (359)
..+ - -+.-.++.|||||++||...
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 112 0 11235788999999998874
No 347
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.06 E-value=0.0049 Score=52.20 Aligned_cols=183 Identities=15% Similarity=0.214 Sum_probs=112.3
Q ss_pred EEEeccCCCe--EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 12 LHCLKEHGAV--LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 12 ~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
+.++.+.... ..+.|..++.++-+.+.-| .|+.+|+.+|+.+....-... ---.++... +.++...-.++...+
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEE
Confidence 4455544444 7899988888888887765 899999999998766553321 122344332 345555678899999
Q ss_pred EeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----c----CCceeEEEcCCc-eEEE
Q 041916 87 WKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----P----GHAKTLDFSQKG-LLAV 157 (359)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~----~~i~~~~~s~~g-l~~~ 157 (359)
||..+.+.+.++.- .+.=+.++ .|+..|+.+.....|.++|..+.+....+ . ..++.+.|. +| +++-
T Consensus 115 yd~~tl~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN 190 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN 190 (264)
T ss_dssp EETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE
T ss_pred EccccceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE
Confidence 99999888887753 44556777 46777777777789999999988776665 1 134667776 45 5554
Q ss_pred E-cCCcEEEEcCCCCCCccceee-----c------ccCCCCcceEEEEEeeCCCE
Q 041916 158 G-TGSFVQILGDFSGSHNYSRYM-----G------HSMVKGYQIGKVSFRPYEDV 200 (359)
Q Consensus 158 ~-~d~~i~i~d~~~~~~~~~~~~-----~------~~~~~~~~v~~~~~~p~~~~ 200 (359)
- ....|...|+.++ .....+. . .......-.+.|+|.|..+.
T Consensus 191 VW~td~I~~Idp~tG-~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~ 244 (264)
T PF05096_consen 191 VWQTDRIVRIDPETG-KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDR 244 (264)
T ss_dssp ETTSSEEEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTE
T ss_pred eCCCCeEEEEeCCCC-eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCE
Confidence 4 3466777776666 3322221 0 00001336899999998773
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.05 E-value=0.00018 Score=70.24 Aligned_cols=129 Identities=16% Similarity=0.242 Sum_probs=92.5
Q ss_pred ecCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCC-------CCEEEEEeCCCeEEEEeCCCCc-ceEEEe----ccCC
Q 041916 37 NKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPF-------NGVVSLGHSGGTVTMWKPTTAA-PLIKML----CHQG 103 (359)
Q Consensus 37 ~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~-------~~~l~sg~~dg~v~lwd~~~~~-~~~~~~----~h~~ 103 (359)
.....|+-.|+..|+.+..+..|... |..+ .|+ +...+.|-.+..+..||++-.. .+..-. ....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 45678999999999999999987654 5444 343 2345567788889999998643 222111 2344
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe---ccCCceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT---LPGHAKTLDFSQKG-LLAVGTGSFVQILGD 168 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~ 168 (359)
..+|++-+.+| +||+|+.+|.|++||--..+.... +..+|..|+.+.|| ++.+..+..|.+++.
T Consensus 579 ~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 67788877776 799999999999999432222222 24689999999999 777777888888874
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.05 E-value=0.0027 Score=58.65 Aligned_cols=190 Identities=12% Similarity=0.114 Sum_probs=101.3
Q ss_pred eEEEeCCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec----CCCCe-----EEEEEcCC
Q 041916 2 PYIYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT----GLGRT-----DVMRVNPF 71 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v-----~~~~~sp~ 71 (359)
|.||+..|..+..+.-..+ +.++.|+.+..++ ....||.+++||+. |+. .+.- ....| ....+..+
T Consensus 63 I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 63 IQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCC-Cce--eechhhhccccCcccccccccccCCC
Confidence 8899999999887664334 4999998866555 55679999999986 444 2211 11122 22222224
Q ss_pred CCEEEEEeCCCeEEEEeCCCCc-ceEEEe----------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAA-PLIKML----------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~-~~~~~~----------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
|-.++ ..++.+.+.+-.... ....+. .+........++.+....+....++.+.+.+-.....+. .
T Consensus 139 GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~i~-~ 215 (410)
T PF04841_consen 139 GIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQID-S 215 (410)
T ss_pred CEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccccc-C
Confidence 42222 334445444321111 111110 011100012344455555555555666655543322211 1
Q ss_pred cCCceeEEEcCCc-eEE-EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 141 PGHAKTLDFSQKG-LLA-VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 141 ~~~i~~~~~s~~g-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
.+++..|++||+| +++ ...+|.+.+.+.... .....+... .......+.|+-+...++
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~-~~~~e~~~~---~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS-EKLCEFDTD---SKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECccc-ceeEEeecC---cCCCCcEEEEECCCcEEE
Confidence 4689999999999 444 456689888874333 222222222 223677889997654433
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=3.6e-05 Score=71.04 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=79.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeE-EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVS-ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~-~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
..+--+.|+|.-.+||.+..+|.|.+..++ .+.+.++..|.-.++ +++|.|||+.||+|=.||+|++.|+.++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 346778999999999999999999999988 778888886777777 999999999999999999999999999888777
Q ss_pred c----cCCceeEEEcCC
Q 041916 140 L----PGHAKTLDFSQK 152 (359)
Q Consensus 140 ~----~~~i~~~~~s~~ 152 (359)
+ ...|.++-|++.
T Consensus 100 ~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 100 FLFSVETDISKGIWDRI 116 (665)
T ss_pred cccccccchheeecccc
Confidence 4 457888888754
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.01 E-value=0.00096 Score=64.14 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=102.7
Q ss_pred eEEEEEecCCCEEEEEe------cC--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC-----------
Q 041916 21 VLKLQFLRNHFLLASIN------KF--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG----------- 81 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~------~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d----------- 81 (359)
+...+++|+|..++... .| ..|.+++.. +.. ..+... ...+.-.|+|+|..|++.+..
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 37888999998876654 23 356666652 333 333222 237889999998876665432
Q ss_pred -CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEE---EEcCCcee-e---Eec----cCCceeEEE
Q 041916 82 -GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKI---WDLRKYEV-L---QTL----PGHAKTLDF 149 (359)
Q Consensus 82 -g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~----~~~i~~~~~ 149 (359)
+.+.+.++..+.... ...+.|.++.|||||..++... ++.|.+ -....|.. + ..+ ...+.++.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 233333444433322 2356799999999999988776 477776 33333431 1 112 234688999
Q ss_pred cCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 150 SQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 150 s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
.+++ |+++..++.-.+|.+.-++.....+.... ...++.+++-++. -++++..+|..
T Consensus 505 ~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n--~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 505 RTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRN--LSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred ecCCEEEEEecCCCCceEEEecCCccccccCCCC--ccCceEEEecCCc--eEEEEcCCceE
Confidence 9999 66665554444444322222222222211 1236777777763 45566777633
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.99 E-value=0.00064 Score=62.90 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=76.8
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee
Q 041916 58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL 137 (359)
Q Consensus 58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 137 (359)
...-.+..+.++|+|+.+++ +.||.-.|+......... .+.-..++|.+++ .+|+-...++|.++.--.....
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccc
Confidence 34455789999999999888 567778888743332222 2344678899855 4666666888999733233332
Q ss_pred Eec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 138 QTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 138 ~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
..+ +..+..|-. | ++....++.|.+||..++ ..+..+... +|..+.|++++.+++..+.+.+
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~-~~i~~i~v~------~vk~V~Ws~~g~~val~t~~~i 167 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETG-KLIRRIDVS------AVKYVIWSDDGELVALVTKDSI 167 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-------E-EEEEE-TTSSEEEEE-S-SE
T ss_pred eEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHc-ceeeEEecC------CCcEEEEECCCCEEEEEeCCeE
Confidence 334 222333333 7 777777779999998776 455555433 5899999999999999887763
No 353
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.97 E-value=0.0035 Score=59.46 Aligned_cols=166 Identities=11% Similarity=0.050 Sum_probs=103.7
Q ss_pred eEEEe-CCCcEEEEeccCC---------------------Ce-EEEEEecCCCEEEEEecCC------------------
Q 041916 2 PYIYN-RDGTELHCLKEHG---------------------AV-LKLQFLRNHFLLASINKFG------------------ 40 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~---------------------~~-~~l~~s~~~~~l~s~~~dg------------------ 40 (359)
|+-+| .+|+.+-.+.... .+ ...++.+.+.+++.++.++
T Consensus 177 v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~ 256 (488)
T cd00216 177 LRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTD 256 (488)
T ss_pred EEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCcee
Confidence 45667 7888776654321 12 2445555566777776554
Q ss_pred eEEEEECCCCeEEEEEecCCCCeE------EEEEc----CCCC---EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE
Q 041916 41 QLRYQDVTMGEIVGNFRTGLGRTD------VMRVN----PFNG---VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA 107 (359)
Q Consensus 41 ~i~iwd~~~~~~~~~~~~~~~~v~------~~~~s----p~~~---~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~ 107 (359)
.|.-+|..+|+.+..++.-..... ..... -++. .++.++.+|.+...|..+|+.+...... ...
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~ 333 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQP 333 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccc
Confidence 799999999999988753211111 01111 1232 6778889999999999999988765421 112
Q ss_pred EEEcCCCCEEEEE------------------eCCCeEEEEEcCCceeeEeccCC-----------c--eeEEEcCCceEE
Q 041916 108 LAFHPNGHLMATS------------------GKECKIKIWDLRKYEVLQTLPGH-----------A--KTLDFSQKGLLA 156 (359)
Q Consensus 108 i~~~~~~~~l~~~------------------~~d~~i~iwd~~~~~~~~~~~~~-----------i--~~~~~s~~gl~~ 156 (359)
++.+| ..++.+ ..+|.|...|+.+++.+-+.... . ..+....+-+++
T Consensus 334 ~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~ 411 (488)
T cd00216 334 MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA 411 (488)
T ss_pred cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE
Confidence 33444 233332 24678999999999887766321 1 122333322777
Q ss_pred EEcCCcEEEEcCCCCC
Q 041916 157 VGTGSFVQILGDFSGS 172 (359)
Q Consensus 157 ~~~d~~i~i~d~~~~~ 172 (359)
++.+|.|+.+|..++.
T Consensus 412 g~~dG~l~ald~~tG~ 427 (488)
T cd00216 412 GAADGYFRAFDATTGK 427 (488)
T ss_pred ECCCCeEEEEECCCCc
Confidence 8889999999988874
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.93 E-value=0.001 Score=63.90 Aligned_cols=164 Identities=13% Similarity=0.083 Sum_probs=90.1
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe------CCC--eEEEEeCCCCcceEEEeccCCCeEEEEE
Q 041916 39 FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH------SGG--TVTMWKPTTAAPLIKMLCHQGPVSALAF 110 (359)
Q Consensus 39 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~------~dg--~v~lwd~~~~~~~~~~~~h~~~v~~i~~ 110 (359)
+|.+.-.+-..-.++.-..+....+...+.+|+|..++..- .|+ .|.+++.. +.. ..+..- ...+...|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g-~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG-HSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC-CCCCCceE
Confidence 66665544222122222222334678899999998877654 244 45555542 222 333222 23788999
Q ss_pred cCCCCEEEEEeCC------------CeEEEEEcCCceeeEeccCCceeEEEcCCc-eEEEEcCCcEEE---EcCCCCCCc
Q 041916 111 HPNGHLMATSGKE------------CKIKIWDLRKYEVLQTLPGHAKTLDFSQKG-LLAVGTGSFVQI---LGDFSGSHN 174 (359)
Q Consensus 111 ~~~~~~l~~~~~d------------~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g-l~~~~~d~~i~i---~d~~~~~~~ 174 (359)
+|||..|++.+.. +.+.+.++..+.....+.+.|..+.||||| .++.-.++.|++ -....+...
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~ 484 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYA 484 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCcee
Confidence 9998887776532 344444555544433456789999999999 333333677777 332223111
Q ss_pred ccee--ecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 175 YSRY--MGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 175 ~~~~--~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+... .... .+..+.++.|.+++.++ ++..++
T Consensus 485 l~~~~~l~~~--l~~~~~~l~W~~~~~L~-V~~~~~ 517 (591)
T PRK13616 485 LTNPREVGPG--LGDTAVSLDWRTGDSLV-VGRSDP 517 (591)
T ss_pred ecccEEeecc--cCCccccceEecCCEEE-EEecCC
Confidence 1000 1111 12246889999999855 544443
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.92 E-value=0.0015 Score=61.78 Aligned_cols=181 Identities=9% Similarity=-0.024 Sum_probs=106.2
Q ss_pred EecCCCEEEE-EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcceEEEec
Q 041916 26 FLRNHFLLAS-INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG----TVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 26 ~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg----~v~lwd~~~~~~~~~~~~ 100 (359)
++|||..+.. .-..+.+.+.|..+.+...++.-.. ....++++|+|.++++.+.+. ++...+..+...+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 3455654422 2235678888888887777776543 456789999999988876322 233333222211111110
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----ceeeEec--cCCceeEEEcCCc--eE-EEEcCCcEEEEcCCC
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-----YEVLQTL--PGHAKTLDFSQKG--LL-AVGTGSFVQILGDFS 170 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-----~~~~~~~--~~~i~~~~~s~~g--l~-~~~~d~~i~i~d~~~ 170 (359)
..+ .++.++|++...+ ++.|.+.|.++ ...+..+ ...+..+.+|||| ++ ++..++++.|+|+..
T Consensus 279 --~~i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 279 --ARI--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred --HHH--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 000 1234578876653 57899999998 4455555 5578999999999 33 344579999999766
Q ss_pred CCCcc-------ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 171 GSHNY-------SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 171 ~~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
..... ..+.+... -+......+|.++|....+-..|..+-.|.
T Consensus 353 ~k~~~~~~~~~~~~vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhhhccCCccceEEEeec-cCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 42211 11111111 122345678888887666655555555554
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.88 E-value=6.6e-05 Score=42.83 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=34.7
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 50 GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 50 ~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
+++...+..|...|.++.|+|.+..+++++.|+.+.+|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677788889999999999999999999999999996
No 357
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.87 E-value=0.00032 Score=69.61 Aligned_cols=113 Identities=12% Similarity=0.236 Sum_probs=78.9
Q ss_pred EEEEEecCCCEEEEE-----ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe---CCCeEEEEeCCC--
Q 041916 22 LKLQFLRNHFLLASI-----NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH---SGGTVTMWKPTT-- 91 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~---~dg~v~lwd~~~-- 91 (359)
+.++|.-||.++|+. .....|+|||-. |..-..-....+.-.+++|-|.|..+++-. .|+.|.+|.-+.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~ 277 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLR 277 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcc
Confidence 679999999999883 223799999976 543322222334456899999999988753 456788887442
Q ss_pred -CcceEEEeccCCCeEEEEEcCCCCEEEE---EeCCCeEEEEEcCCce
Q 041916 92 -AAPLIKMLCHQGPVSALAFHPNGHLMAT---SGKECKIKIWDLRKYE 135 (359)
Q Consensus 92 -~~~~~~~~~h~~~v~~i~~~~~~~~l~~---~~~d~~i~iwd~~~~~ 135 (359)
+.....+......|..++|+.++..|++ +.....|.+|-+.++.
T Consensus 278 hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 2222233334445899999999999988 4455569999998854
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=5.7e-05 Score=43.09 Aligned_cols=38 Identities=37% Similarity=0.798 Sum_probs=33.6
Q ss_pred cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE
Q 041916 93 APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD 130 (359)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd 130 (359)
.+...+..|...|.++.|++++.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
No 359
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.83 E-value=0.0096 Score=52.28 Aligned_cols=172 Identities=12% Similarity=0.134 Sum_probs=108.4
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCcceEEEeccCC------
Q 041916 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWKPTTAAPLIKMLCHQG------ 103 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd~~~~~~~~~~~~h~~------ 103 (359)
+.+.++|.++++.+..+.... ...+..+|+++.+++++ ..-.|.+||..+..+...+.-...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 589999999999998887543 33467799999888753 334699999999877765542221
Q ss_pred -CeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec--cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCcccee
Q 041916 104 -PVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRY 178 (359)
Q Consensus 104 -~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~ 178 (359)
....++++.||+++++... -.+|.+.|+...+.+.++ ++...-.-+-++++.+.|.||.+.-..+...++.....
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 1234678889999887653 457999999999988888 33333333344558899999998888876554443221
Q ss_pred ec--ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 179 MG--HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 179 ~~--~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.. +.. ....+..-++...+..++.-+.+|.+.-+.
T Consensus 175 t~~F~~~-~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~d 211 (342)
T PF06433_consen 175 TKVFDPD-DDPLFEHPAYSRDGGRLYFVSYEGNVYSAD 211 (342)
T ss_dssp EEESSTT-TS-B-S--EEETTTTEEEEEBTTSEEEEEE
T ss_pred ccccCCC-CcccccccceECCCCeEEEEecCCEEEEEe
Confidence 11 110 112233445555555555566666555443
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.82 E-value=0.0017 Score=63.65 Aligned_cols=130 Identities=8% Similarity=0.027 Sum_probs=91.0
Q ss_pred CEEEEE-eCCCeEEEEeCCCCcceEEEeccCCC-eEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCce--eeE----e
Q 041916 73 GVVSLG-HSGGTVTMWKPTTAAPLIKMLCHQGP-VSALAFHP-----NGHLMATSGKECKIKIWDLRKYE--VLQ----T 139 (359)
Q Consensus 73 ~~l~sg-~~dg~v~lwd~~~~~~~~~~~~h~~~-v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~~~~--~~~----~ 139 (359)
++|+.. .....|+-.|+..|+.+..+..|... |..++=.. ++.-.++|-.+..+..||.|-.. ++. .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444443 34577999999999999999987654 55543221 12345666677899999999742 332 1
Q ss_pred c--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 140 L--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 140 ~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
+ ....+|++-+.+| +++|+.+|.|++|| ..+......+.+. +.+|..|..+.||++|++.+..
T Consensus 574 Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~l----G~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDGYIAVGSNKGDIRLYD-RLGKRAKTALPGL----GDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred cccCCCceEEEecCCceEEEEeCCCcEEeec-ccchhhhhcCCCC----CCCeeEEEecCCCcEEEEeecc
Confidence 2 2356899999999 88888999999999 4443333344433 4599999999999998776655
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.0011 Score=58.27 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=85.3
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEec-CCeEEEEECCC--Ce-----EEEEEecCCCCeEEEEEcCCC
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINK-FGQLRYQDVTM--GE-----IVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~-dg~i~iwd~~~--~~-----~~~~~~~~~~~v~~~~~sp~~ 72 (359)
||.+|..|..+..+..+-.+ +.|+||||++.|+.+.. .+.|.-|++.. +. ....+....+..-.++...+|
T Consensus 145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG 224 (307)
T COG3386 145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG 224 (307)
T ss_pred EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC
Confidence 56666678888888887766 99999999988877765 47888887752 21 112222344566678888888
Q ss_pred CEEEEEeCCC-eEEEEeCCCCcceEEEeccCCCeEEEEEc-CCCCEEEEEeC
Q 041916 73 GVVSLGHSGG-TVTMWKPTTAAPLIKMLCHQGPVSALAFH-PNGHLMATSGK 122 (359)
Q Consensus 73 ~~l~sg~~dg-~v~lwd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~~~~~ 122 (359)
.+.+++..+| .|.+|++. ++.+..+.-....+++++|- |+.+.|++.+.
T Consensus 225 ~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 225 NLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 8886665555 89999988 88888887666778888884 45566555543
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.77 E-value=0.0034 Score=45.50 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=68.2
Q ss_pred eEEEEEec---CC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916 21 VLKLQFLR---NH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 21 ~~~l~~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
+++|++.. || +.|++|+.|..|++|+- ...+..+... +.|++++-... ..++.|..+|+|-+|+-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 35566554 33 67999999999999994 4677777654 56788877665 678899999999999753 2334
Q ss_pred EEeccCCCeEEEEEcC---CCC-EEEEEeCCCeEE
Q 041916 97 KMLCHQGPVSALAFHP---NGH-LMATSGKECKIK 127 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~---~~~-~l~~~~~d~~i~ 127 (359)
.... ...+.++++.. ||. -|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4433 23356665543 333 488888888764
No 363
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.0044 Score=51.64 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=75.5
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA 109 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~ 109 (359)
|.+++.|...|-+++.+..+|.....+..-..-=......+++.++.+|+.|++.+..|+.+..++.+.+..-+...+-+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 56788899999999999999987777764322112234567899999999999999999999988888776555555666
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 110 FHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 110 ~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
..|-...|+.+...|.|.--...++
T Consensus 143 i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 143 IAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred ecCCCceEEEEeccceEEEEccCCC
Confidence 7773334444555566555554443
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00075 Score=61.45 Aligned_cols=139 Identities=17% Similarity=0.248 Sum_probs=97.3
Q ss_pred CCCE-EEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCCcc--eEEE
Q 041916 29 NHFL-LASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-------VVSLGHSGGTVTMWKPTTAAP--LIKM 98 (359)
Q Consensus 29 ~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~sg~~dg~v~lwd~~~~~~--~~~~ 98 (359)
+.++ |.++.....|+-.|+..|+.+..+..+.. |+-+.+.|++. .-+.|-.|..|+-||++-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3444 34555567788999999999999998866 77788888753 123466788899999984322 2222
Q ss_pred ecc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee---eEeccCCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916 99 LCH----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV---LQTLPGHAKTLDFSQKG-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 99 ~~h----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~ 169 (359)
++| .....|++-..+| +|++||.+|.|++||--.-.. +..+..+|..+..+.+| ++.+..+.+|.+.++.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 232 2245566655555 799999999999999733222 23335689999999999 7777778888888754
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.72 E-value=0.0086 Score=55.30 Aligned_cols=178 Identities=15% Similarity=0.109 Sum_probs=98.2
Q ss_pred EEEEEecCCCEEEEEecC----------C-eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 22 LKLQFLRNHFLLASINKF----------G-QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~d----------g-~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
..++.+|.|..+|....+ . .|.||+.. |+.+.++.-..+.+.++.|+.+. .|++-..||.+++||+.
T Consensus 32 ~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 32 YIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 345667777666665433 1 59999965 78888877656899999998865 45566799999999986
Q ss_pred CCcceEEE-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeE---eccCCce---------e-EEE
Q 041916 91 TAAPLIKM-------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQ---TLPGHAK---------T-LDF 149 (359)
Q Consensus 91 ~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~---~~~~~i~---------~-~~~ 149 (359)
|+....+ ......+..+.+..+|-.+++ .++.+.+..--... ... ..+.... . ..+
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 3331111 111122222233335533333 34444443221111 111 1111111 1 223
Q ss_pred cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+.+. .+....++.+.+.+.... .. +. ..+++..++.||++++++.-+.+|.+.++
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~-~~---i~-----~~~~i~~iavSpng~~iAl~t~~g~l~v~ 243 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSF-KQ---ID-----SDGPIIKIAVSPNGKFIALFTDSGNLWVV 243 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccc-cc---cc-----CCCCeEEEEECCCCCEEEEEECCCCEEEE
Confidence 3333 444455566664442211 11 11 12379999999999999999999866554
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.70 E-value=0.017 Score=48.92 Aligned_cols=156 Identities=11% Similarity=0.085 Sum_probs=100.5
Q ss_pred EEEeCCCcEEEEeccCCCeEEEEEecCC-CEEEEEecCCe-EEEEECCCCeEEEEEecCCCC--eEEEEEcCCCCEEEEE
Q 041916 3 YIYNRDGTELHCLKEHGAVLKLQFLRNH-FLLASINKFGQ-LRYQDVTMGEIVGNFRTGLGR--TDVMRVNPFNGVVSLG 78 (359)
Q Consensus 3 ~iwd~~g~~~~~l~~h~~~~~l~~s~~~-~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~sp~~~~l~sg 78 (359)
-.++..|+++..+.-......|+|+|.. .-++.+-.-|+ -.++|..+++....+....+. .-.=.|||||.+|+..
T Consensus 52 a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYAT 131 (366)
T COG3490 52 ATLSEAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYAT 131 (366)
T ss_pred EEEccCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEee
Confidence 3456677777666555555778888864 44555544443 468888877655554332221 1123689999998876
Q ss_pred eC-----CCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeC------------------CCeEEEEEcCCc
Q 041916 79 HS-----GGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGK------------------ECKIKIWDLRKY 134 (359)
Q Consensus 79 ~~-----dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~------------------d~~i~iwd~~~~ 134 (359)
-. -|.|-|||.+.+ +.+..+..|--.-..+.|.+||+.|+.+.. .-++.+.|..++
T Consensus 132 Endfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG 211 (366)
T COG3490 132 ENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATG 211 (366)
T ss_pred cCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecccc
Confidence 43 378999998854 345567777666788999999999988753 123555565666
Q ss_pred eeeEec--c-----CCceeEEEcCCc-eEEEE
Q 041916 135 EVLQTL--P-----GHAKTLDFSQKG-LLAVG 158 (359)
Q Consensus 135 ~~~~~~--~-----~~i~~~~~s~~g-l~~~~ 158 (359)
..+... + -++..++..++| ++.++
T Consensus 212 ~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 212 NLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred chhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 554433 2 257788888888 44443
No 367
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.67 E-value=0.0046 Score=44.86 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=64.5
Q ss_pred eEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccce
Q 041916 105 VSALAFHP---NG-HLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSR 177 (359)
Q Consensus 105 v~~i~~~~---~~-~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~ 177 (359)
|+++++.. || +.|++||.|..|++|+-. ..+.++ ...|++++-...+ ++.+-.+|+|-+|+- .. .....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~-~~-RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR-SQ-RLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC-cc-eeeee
Confidence 66777765 33 569999999999999865 455555 5678888888778 777778899999983 21 22222
Q ss_pred eecccCCCCcceEEEEEeeCC----CEEEEEcCCCeE
Q 041916 178 YMGHSMVKGYQIGKVSFRPYE----DVLGIGHSMGWS 210 (359)
Q Consensus 178 ~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~~ 210 (359)
-..+ .++++++..-. .-|++|-++|.+
T Consensus 78 KSK~------~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 78 KSKN------QVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred ccCC------CeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 2222 46666655433 257777777754
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.65 E-value=0.052 Score=50.41 Aligned_cols=186 Identities=13% Similarity=0.043 Sum_probs=100.9
Q ss_pred EEEEEecCCCEEEEE-ecC----CeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 041916 22 LKLQFLRNHFLLASI-NKF----GQLRYQDVTMGEIVGNF-RTGLGRTDVMRVNPFNGVVSLGHSGG-----------TV 84 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~-~~d----g~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg-----------~v 84 (359)
..+.+||+|++||.+ +.. ..|+++|+.+|+.+... ... ....+.|.+++..|+....+. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 467889999988765 333 45999999999876532 221 123499999988766654332 37
Q ss_pred EEEeCCCCcce--EEEeccCCC--eEEEEEcCCCCEEEEEeC---C-CeEEEEEcCCc-----eeeEec---cCCceeEE
Q 041916 85 TMWKPTTAAPL--IKMLCHQGP--VSALAFHPNGHLMATSGK---E-CKIKIWDLRKY-----EVLQTL---PGHAKTLD 148 (359)
Q Consensus 85 ~lwd~~~~~~~--~~~~~h~~~--v~~i~~~~~~~~l~~~~~---d-~~i~iwd~~~~-----~~~~~~---~~~i~~~~ 148 (359)
..|.+.+...- ..+...... ...+..++|+++|+..+. + ..+.+.|+..+ .+.... .+....+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888776543 444443333 567889999999765432 2 35888888764 222212 22333444
Q ss_pred EcCCceEEEEc----CCcEEEEcCCCCCC--ccceeecccCCCCcceEEEEEeeCCCEEEE-EcCCCeEEEE
Q 041916 149 FSQKGLLAVGT----GSFVQILGDFSGSH--NYSRYMGHSMVKGYQIGKVSFRPYEDVLGI-GHSMGWSSIL 213 (359)
Q Consensus 149 ~s~~gl~~~~~----d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~-~~~dg~~~i~ 213 (359)
...+.++..+. .+.|.-.++..... ....+..+. ....+..+. ..+++|+. ...++...+.
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~--~~~~l~~~~--~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED--EDVSLEDVS--LFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S--SSEEEEEEE--EETTEEEEEEEETTEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC--CceeEEEEE--EECCEEEEEEEECCccEEE
Confidence 44333444432 25677777655432 122344442 112344443 44555444 3444544443
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.62 E-value=0.015 Score=52.06 Aligned_cols=172 Identities=16% Similarity=0.183 Sum_probs=101.3
Q ss_pred CeEEEEECCCCeEEEEEecC-CCCeEEEE---EcCC----CCEEEEEeC----------CCeEEEEeCCCC----cceEE
Q 041916 40 GQLRYQDVTMGEIVGNFRTG-LGRTDVMR---VNPF----NGVVSLGHS----------GGTVTMWKPTTA----APLIK 97 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~-~~~v~~~~---~sp~----~~~l~sg~~----------dg~v~lwd~~~~----~~~~~ 97 (359)
+.|++.|..+.+.+.++.-. ...+.+++ +..+ ..+|++|.. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889998888877666532 23344443 3332 467777752 289999999873 12222
Q ss_pred E--eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEe--ccC--CceeEEEcCCceEEEEcCCcEEEEcCCC
Q 041916 98 M--LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQT--LPG--HAKTLDFSQKGLLAVGTGSFVQILGDFS 170 (359)
Q Consensus 98 ~--~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~--~~~--~i~~~~~s~~gl~~~~~d~~i~i~d~~~ 170 (359)
+ ....++|++++-- .+ +|+++. .+.|.+|++...+ .... +.. .+.++....+-++++.....+.++....
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 2 2457889998866 34 444444 4789999998776 3322 233 4566665544466666667777664323
Q ss_pred CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 171 GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
....+..+.... ....++++.|-++++.++++..+|.+.++-..
T Consensus 159 ~~~~l~~va~d~--~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 159 ENNKLILVARDY--QPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTE-EEEEEEES--S-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred cCCEEEEEEecC--CCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 222233333221 23368999999777888898888877766543
No 370
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.61 E-value=0.027 Score=51.55 Aligned_cols=187 Identities=11% Similarity=0.084 Sum_probs=104.2
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCe-------------------------------------------EEEEEe
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGE-------------------------------------------IVGNFR 57 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------------------~~~~~~ 57 (359)
++.++|+++..-|++|..+|.|.||.....+ +...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4788999988888888889988888653211 111233
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--c------cCCCeEEEEEcC-----CC---CEEEEEe
Q 041916 58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--C------HQGPVSALAFHP-----NG---HLMATSG 121 (359)
Q Consensus 58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~------h~~~v~~i~~~~-----~~---~~l~~~~ 121 (359)
...++|++++.| +=.++|.|..+|.+.|.|++....+..-. . ....|+++.|.- |+ -.|++|+
T Consensus 84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 456889999987 44599999999999999998776555422 1 234678888863 33 4688899
Q ss_pred CCCeEEEEEcCC---cee----eEe---ccCCceeEE-EcC----------------------CceEEEEcCCcEEEEcC
Q 041916 122 KECKIKIWDLRK---YEV----LQT---LPGHAKTLD-FSQ----------------------KGLLAVGTGSFVQILGD 168 (359)
Q Consensus 122 ~d~~i~iwd~~~---~~~----~~~---~~~~i~~~~-~s~----------------------~gl~~~~~d~~i~i~d~ 168 (359)
..|.+.+|.+.- +.. ... ..+++..+. ++. .|+++++.+..++++.+
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998752 111 111 123333332 211 12667777889999987
Q ss_pred CCCCCccceeecccCCCCcceEEEEEe-----eCCCEEEEEcCCCeEEEE
Q 041916 169 FSGSHNYSRYMGHSMVKGYQIGKVSFR-----PYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~~~~~dg~~~i~ 213 (359)
.+.......+ .... ....+++. ..+..|++-..+|.+.++
T Consensus 243 ~~~k~~~K~~-~~~~----~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 243 PKSKGAHKSF-DDPF----LCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp T---EEEEE--SS-E----EEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred CCCcccceee-cccc----ccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 6653222222 2211 34445553 244455555555544443
No 371
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00059 Score=64.03 Aligned_cols=110 Identities=12% Similarity=0.055 Sum_probs=79.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc-eE-EEEcCCcEEEEcCCCCCCccce
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG-LL-AVGTGSFVQILGDFSGSHNYSR 177 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g-l~-~~~~d~~i~i~d~~~~~~~~~~ 177 (359)
.|.--+++..+.+++.|+.-|.+++|+-..+.....- .+.+..+++|++. ++ +++..|.|.++-+.........
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 3444455668899999999999999998776543322 2345677788888 44 4556689999987665455455
Q ss_pred eecccC-CCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 178 YMGHSM-VKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 178 ~~~~~~-~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+..+.. .+...|++++|++++..|.+|...|.+...
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~ 151 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLT 151 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEE
Confidence 544422 145689999999999999999999976553
No 372
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.55 E-value=0.0041 Score=59.44 Aligned_cols=114 Identities=15% Similarity=0.373 Sum_probs=80.6
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEc--CCCCEEEEEeCCCeEEEEE
Q 041916 54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFH--PNGHLMATSGKECKIKIWD 130 (359)
Q Consensus 54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~--~~~~~l~~~~~d~~i~iwd 130 (359)
.++......+.-+.-|.-+...++.+....+.|||.+.+.....-. ...+.|.++.|. |+|+.+++.|-.+.|.+|-
T Consensus 23 ~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 23 STFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred EEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence 3444444555556556655555555566679999998876433222 447789999996 5899999999999999985
Q ss_pred cC-----C----ceeeEec------cCCceeEEEcCCceEEEEcCCcEEEEc
Q 041916 131 LR-----K----YEVLQTL------PGHAKTLDFSQKGLLAVGTGSFVQILG 167 (359)
Q Consensus 131 ~~-----~----~~~~~~~------~~~i~~~~~s~~gl~~~~~d~~i~i~d 167 (359)
-. + +.++..+ +.+|.+..|.++|.++++.++.+.|+|
T Consensus 103 Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 103 QLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred ccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 42 1 2334443 467899999999977777789999998
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.50 E-value=0.021 Score=52.18 Aligned_cols=197 Identities=12% Similarity=0.045 Sum_probs=102.7
Q ss_pred EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--c------CCCCeEEEEEcC-----CC---CEEE
Q 041916 14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--T------GLGRTDVMRVNP-----FN---GVVS 76 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~sp-----~~---~~l~ 76 (359)
.+....+. ++++.| |=-++|.|..+|.+.|.|++....+..-. . ....++++.|+. |+ -.++
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 34444454 888887 44578999999999999998777665422 2 224577888862 23 3788
Q ss_pred EEeCCCeEEEEeCC--C-Ccce----EEEeccCCCeEEEE-EcCC-----------------C---CEEEEEeCCCeEEE
Q 041916 77 LGHSGGTVTMWKPT--T-AAPL----IKMLCHQGPVSALA-FHPN-----------------G---HLMATSGKECKIKI 128 (359)
Q Consensus 77 sg~~dg~v~lwd~~--~-~~~~----~~~~~h~~~v~~i~-~~~~-----------------~---~~l~~~~~d~~i~i 128 (359)
+|...|.+.+|.+. . +... .....+.++|..|. |+.+ | +-++..+.+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 89999999999764 1 1111 11124556666555 3221 0 12344444678999
Q ss_pred EEcCCceeeEec-cCCc--eeEEEc-----CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916 129 WDLRKYEVLQTL-PGHA--KTLDFS-----QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 129 wd~~~~~~~~~~-~~~i--~~~~~s-----~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
+..-+.+..+.. ..++ ..+++- ..+ +++...+|.+++|.+..- +.+....-........+...+++++|
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L-kei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL-KEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc-hHhhcccCCCccccccccccEECCCC
Confidence 999887765544 3322 334442 233 777788999999997654 22222222111011235567789999
Q ss_pred CEEEEEcCCCeEEE
Q 041916 199 DVLGIGHSMGWSSI 212 (359)
Q Consensus 199 ~~l~~~~~dg~~~i 212 (359)
+.++-.+......+
T Consensus 319 di~~~~gpsE~~l~ 332 (395)
T PF08596_consen 319 DIFYWTGPSEIQLF 332 (395)
T ss_dssp -EEEE-SSSEEEEE
T ss_pred CEEEEeCcccEEEE
Confidence 88776666554333
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0035 Score=61.89 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=73.9
Q ss_pred CCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEE
Q 041916 30 HFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSAL 108 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i 108 (359)
+..++.|+..|.|-..|+... .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..++++..+..|..+.+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 456788888899988887642 1112222345799999999999999999999999999999999888888666665554
Q ss_pred EE---cCCCCEEEEEeCCCeEEEEEc
Q 041916 109 AF---HPNGHLMATSGKECKIKIWDL 131 (359)
Q Consensus 109 ~~---~~~~~~l~~~~~d~~i~iwd~ 131 (359)
-+ ..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 44 345666777766665 5654
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0036 Score=57.19 Aligned_cols=127 Identities=8% Similarity=0.035 Sum_probs=90.4
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCE-------EEEEeCCCeEEEEEcCCcee-e------Eec
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHL-------MATSGKECKIKIWDLRKYEV-L------QTL 140 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-------l~~~~~d~~i~iwd~~~~~~-~------~~~ 140 (359)
|.++.....++-.|+..|+.+..+.-+.+ |+-+.+.|+... -+.|-.|..|.-||+|-... . +.+
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 34455556688889999999999987777 777788886432 23455678899999985321 1 111
Q ss_pred --cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 141 --PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 141 --~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
.....|++-..+| +++++.+|.|++||- .+......+.+. +.+|..|..+.+|+++++.+..
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL----G~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL----GDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc----CCceeeEEeeccCcEEEEeccc
Confidence 2346788888899 888999999999994 554444445544 3499999999999988765544
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.29 E-value=0.1 Score=45.37 Aligned_cols=140 Identities=15% Similarity=0.097 Sum_probs=86.7
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE---------
Q 041916 28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM--------- 98 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~--------- 98 (359)
..++.|+.|..+| |.++++........+. +..+|..+...|+-+.|++-+ |+.+.++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899998888 8999983332222222 223499999998877766554 499999998765433311
Q ss_pred -----eccCCCeEEEE--EcCCCCEEEEEeCCCeEEEEEcCCc-----eeeEec--cCCceeEEEcCCceEEEEcCCcEE
Q 041916 99 -----LCHQGPVSALA--FHPNGHLMATSGKECKIKIWDLRKY-----EVLQTL--PGHAKTLDFSQKGLLAVGTGSFVQ 164 (359)
Q Consensus 99 -----~~h~~~v~~i~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~--~~~i~~~~~s~~gl~~~~~d~~i~ 164 (359)
......+...+ -.+.+...+.+.....|.+|..... .....+ +..+.+++|.++.++.+. .+...
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~-~~~f~ 160 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGT-SKGFY 160 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEe-CCceE
Confidence 11222344444 1123444444444568888877652 455555 778999999966555444 55678
Q ss_pred EEcCCCC
Q 041916 165 ILGDFSG 171 (359)
Q Consensus 165 i~d~~~~ 171 (359)
+.|+.++
T Consensus 161 ~idl~~~ 167 (275)
T PF00780_consen 161 LIDLNTG 167 (275)
T ss_pred EEecCCC
Confidence 8887654
No 377
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.25 E-value=0.026 Score=48.48 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCEEEEEe---CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE-cCCcee-
Q 041916 62 RTDVMRVNPFNGVVSLGH---SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD-LRKYEV- 136 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~---~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd-~~~~~~- 136 (359)
.+...++++++..++... ....+.++.. +.....+. ....++..+|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999998776655 3334555543 33333322 223678899999988777766666666663 333322
Q ss_pred -eEe--c--cCCceeEEEcCCc--eEEEE---cCCcEEEEcCCCCCCc--cceeecccC--CCCcceEEEEEeeCCCEEE
Q 041916 137 -LQT--L--PGHAKTLDFSQKG--LLAVG---TGSFVQILGDFSGSHN--YSRYMGHSM--VKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 137 -~~~--~--~~~i~~~~~s~~g--l~~~~---~d~~i~i~d~~~~~~~--~~~~~~~~~--~~~~~v~~~~~~p~~~~l~ 202 (359)
+.. . .+.|+++.+|||| ++... .++.|.+--+..+..- ......... .....+.++.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 111 1 2379999999999 33332 3567777643322111 111000000 0234789999999999887
Q ss_pred EEcCCCe
Q 041916 203 IGHSMGW 209 (359)
Q Consensus 203 ~~~~dg~ 209 (359)
.+...+.
T Consensus 182 ~~~~~~~ 188 (253)
T PF10647_consen 182 LGRSAGG 188 (253)
T ss_pred EeCCCCC
Confidence 7766553
No 378
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.23 E-value=0.13 Score=45.41 Aligned_cols=205 Identities=13% Similarity=0.060 Sum_probs=119.4
Q ss_pred eEEEe-CCCcEEEEeccCC------Ce--EEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 041916 2 PYIYN-RDGTELHCLKEHG------AV--LKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~------~~--~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp 70 (359)
|.+|| .+-.....+.-.. .+ ..+++++|+++++.... ..+|.|-|+..++.+..+.... ... .-|
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~---iyP 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWL---IYP 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEE---EEE
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEE---EEe
Confidence 67899 6555544332211 12 56788999998887654 5689999999999998887542 121 123
Q ss_pred CC-CEEEEEeCCCeEEEEeCC-CCcceEEEe----ccCCCe-EEEEEcCCCCEEEEEeCCCeEEEEEcCCceee--Eec-
Q 041916 71 FN-GVVSLGHSGGTVTMWKPT-TAAPLIKML----CHQGPV-SALAFHPNGHLMATSGKECKIKIWDLRKYEVL--QTL- 140 (359)
Q Consensus 71 ~~-~~l~sg~~dg~v~lwd~~-~~~~~~~~~----~h~~~v-~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~- 140 (359)
.+ .-+.+-|.||.+.-..+. .|+...+.. .-.+++ ..-++...+..++..+.+|.|+--|+...... ..+
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 22 457888999999998887 455443221 112222 23445556666777889999999999865421 111
Q ss_pred ------------cCCceeEEEcCCc--eEEEE---cC-------CcEEEEcCCCCCCccceee-cccCCCCcceEEEEEe
Q 041916 141 ------------PGHAKTLDFSQKG--LLAVG---TG-------SFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFR 195 (359)
Q Consensus 141 ------------~~~i~~~~~s~~g--l~~~~---~d-------~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~ 195 (359)
++.-.-+++++.. +++.- .+ ..|-+||+.+. +.+..+. .+ ++.+|..+
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l~~------~~~Si~Vs 297 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPLEH------PIDSIAVS 297 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEEEE------EESEEEEE
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeCCC------ccceEEEc
Confidence 2334567777644 33321 11 25777787766 3444443 44 67888888
Q ss_pred eCCC-EEEEE-cCCCeEEEEEcCC
Q 041916 196 PYED-VLGIG-HSMGWSSILVPGS 217 (359)
Q Consensus 196 p~~~-~l~~~-~~dg~~~i~~~~~ 217 (359)
.+.. .|++. ..++.+.++...+
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcC
Confidence 8776 33322 2345455554433
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.16 E-value=0.043 Score=52.92 Aligned_cols=195 Identities=13% Similarity=0.124 Sum_probs=98.6
Q ss_pred EEEEEecCCCEEEEEecC------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCCe-----EEEEe
Q 041916 22 LKLQFLRNHFLLASINKF------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSGGT-----VTMWK 88 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~dg~-----v~lwd 88 (359)
.++++. ++.+.++||.| .++..||..+++-.. .+........ ++ .-+|.+.|+|+.||. |..||
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YD 402 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYD 402 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEec
Confidence 455554 35777888888 467788887765222 1111111111 11 225778889998874 77888
Q ss_pred CCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC------eEEEEEcCCcee--eEecc--CCceeEEEcCCc-eE
Q 041916 89 PTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKEC------KIKIWDLRKYEV--LQTLP--GHAKTLDFSQKG-LL 155 (359)
Q Consensus 89 ~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~------~i~iwd~~~~~~--~~~~~--~~i~~~~~s~~g-l~ 155 (359)
+.+.+ .+..+........... -+|.+.++||.++ ++..||..+... +..+. ..-..++.-.+. ++
T Consensus 403 p~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv 480 (571)
T KOG4441|consen 403 PVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV 480 (571)
T ss_pred CCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE
Confidence 77643 2222221111122222 2677777777554 577888877543 33331 112234444444 45
Q ss_pred EEEcCC-----cEEEEcCCCCCCccceeecccCCCCcceEEE-EEeeCCCEEEEEcCCCeEEEEEcCCCCCccccccC
Q 041916 156 AVGTGS-----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKV-SFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVA 227 (359)
Q Consensus 156 ~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~~~~~~ 227 (359)
++|.++ .|..||..++.=........ +...+ ...-++...++|+.+|...+=..-..|...+.|..
T Consensus 481 vGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 481 VGGFDGTSALSSVERYDPETNQWTMVAPMTS------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred ECCccCCCccceEEEEcCCCCceeEcccCcc------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 555554 47788876652111111111 11111 12334666777777764443333333555555543
No 380
>PHA02713 hypothetical protein; Provisional
Probab=97.02 E-value=0.11 Score=50.22 Aligned_cols=138 Identities=8% Similarity=0.023 Sum_probs=68.5
Q ss_pred CCCEEEEEecC------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCc--
Q 041916 29 NHFLLASINKF------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSGG-----TVTMWKPTTAA-- 93 (359)
Q Consensus 29 ~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~dg-----~v~lwd~~~~~-- 93 (359)
++.+.+.||.+ ..+..||+.+..-.. .+....... +++ .-+|.+.+.|+.++ +|..||+.+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56677777753 357788887664211 111111111 222 23567778888764 48889987653
Q ss_pred ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----------------------eEEEEEcCCce--eeEeccC-Cc-ee
Q 041916 94 PLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----------------------KIKIWDLRKYE--VLQTLPG-HA-KT 146 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~--~~~~~~~-~i-~~ 146 (359)
.+..+.........+++ +|...+.||.++ .+..||..+.+ .+..+.. .. .+
T Consensus 381 ~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~ 458 (557)
T PHA02713 381 MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG 458 (557)
T ss_pred ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence 11122111111122222 566667776542 47778877643 3333311 11 22
Q ss_pred EEEcCCc-eEEEEcC------CcEEEEcCCC
Q 041916 147 LDFSQKG-LLAVGTG------SFVQILGDFS 170 (359)
Q Consensus 147 ~~~s~~g-l~~~~~d------~~i~i~d~~~ 170 (359)
++...+. ++.||.+ ..+..||+.+
T Consensus 459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred EEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 3333333 4445433 2467888765
No 381
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.99 E-value=0.088 Score=46.18 Aligned_cols=140 Identities=12% Similarity=0.066 Sum_probs=76.6
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec-
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC- 100 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~- 100 (359)
..+..++||.++++++.-..+.-||.-...-...-+.....|..|.|+|++.+.+.+ ..|.|++=+... ....+..
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~--~~~~w~~~ 224 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD--DGETWSEP 224 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT--EEEEE---
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC--Cccccccc
Confidence 778889999999988766666788854322222222345789999999998876654 888888766211 1122211
Q ss_pred ------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeEe---ccCCceeEEEcCCc-eEEEEcCCcEEEE
Q 041916 101 ------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQT---LPGHAKTLDFSQKG-LLAVGTGSFVQIL 166 (359)
Q Consensus 101 ------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~---~~~~i~~~~~s~~g-l~~~~~d~~i~i~ 166 (359)
..-.+.+++|.+++...++|+. |.+. .....|+ .... +++....+.|.+.. -++.+.+|.|--|
T Consensus 225 ~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred cCCcccCceeeEEEEecCCCCEEEEeCC-ccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 1223789999998877776664 4333 2333333 2222 24557888886655 7788888887655
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.97 E-value=0.055 Score=47.07 Aligned_cols=134 Identities=14% Similarity=0.246 Sum_probs=82.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE-----------
Q 041916 70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ----------- 138 (359)
Q Consensus 70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----------- 138 (359)
..++.|+.|..+| |.++++........+. +...|..+...|+-+.|++-+ |+.+.++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3567899999999 8999983332222222 233499999999888777765 4999999997754333
Q ss_pred ----ec--cCCceeEE--EcCCc--eEEEEcCCcEEEEcCCCCCCcc-ceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 139 ----TL--PGHAKTLD--FSQKG--LLAVGTGSFVQILGDFSGSHNY-SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 139 ----~~--~~~i~~~~--~s~~g--l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
.+ ...+..++ -.+.+ .+++.....|.+|......... ..+..... ...+.+++|. ++.+++|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l--p~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL--PDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc--CCCcEEEEEe--CCEEEEEeCC
Confidence 12 12333333 11223 6667777788888765431111 12222211 1268899999 6778888777
Q ss_pred CeE
Q 041916 208 GWS 210 (359)
Q Consensus 208 g~~ 210 (359)
++.
T Consensus 158 ~f~ 160 (275)
T PF00780_consen 158 GFY 160 (275)
T ss_pred ceE
Confidence 743
No 383
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0099 Score=59.19 Aligned_cols=181 Identities=9% Similarity=-0.008 Sum_probs=105.5
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCC-------Ce----E-----EEEEecC-CCCeEEEEEcCCCCEEEEE--eCCC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTM-------GE----I-----VGNFRTG-LGRTDVMRVNPFNGVVSLG--HSGG 82 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~----~-----~~~~~~~-~~~v~~~~~sp~~~~l~sg--~~dg 82 (359)
+.++.++.-.++++++..+.+.|+-... +. . ...+.-| .-++..+..++|+...++. +.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 4556666544555556666666665421 11 0 1122222 2356667777887554443 3444
Q ss_pred eEEEEeCCCCcceE-----EEe------ccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce-eeEec--cCCceeE
Q 041916 83 TVTMWKPTTAAPLI-----KML------CHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYE-VLQTL--PGHAKTL 147 (359)
Q Consensus 83 ~v~lwd~~~~~~~~-----~~~------~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~--~~~i~~~ 147 (359)
.|..||+.+..... .+. .......++.|+|.-. ..+++..|+.|.+.-+.... .+..+ ....+++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav 204 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV 204 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence 78999987532111 111 1223456888998543 35667788888888765432 23333 4467999
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
+|+|.| ++++-..|++.-|.. .. +....+........+.|.+|+|.....++++-
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P-~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEP-SL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred EeccccceeeEecCCCeEEEeec-cc-ceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 999999 666667799998863 32 22222222222134589999999887777653
No 384
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.23 Score=42.64 Aligned_cols=151 Identities=6% Similarity=0.056 Sum_probs=93.0
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 57 RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 57 ~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
.+-...+.++.|+|+.+.|++......-.||=...|..+.++. +- .....|.+..+|.+.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3444569999999999988888888777777666788777764 22 23356888888888888778888888877654
Q ss_pred eeeEe-------c------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc--eeecccCC---CCcceEEEEE
Q 041916 135 EVLQT-------L------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS--RYMGHSMV---KGYQIGKVSF 194 (359)
Q Consensus 135 ~~~~~-------~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~~~---~~~~v~~~~~ 194 (359)
..+.. + +...-.++|+|.. ++++-.-+=+.||....+..... ....+... .-..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 32211 1 1235789999987 66666555555554332211111 11111100 0124777888
Q ss_pred eeCCC-EEEEEcCCC
Q 041916 195 RPYED-VLGIGHSMG 208 (359)
Q Consensus 195 ~p~~~-~l~~~~~dg 208 (359)
.+... .|+.+..++
T Consensus 241 ~~~~~~LLVLS~ESr 255 (316)
T COG3204 241 NAITNSLLVLSDESR 255 (316)
T ss_pred cCCCCcEEEEecCCc
Confidence 87544 455555554
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.87 E-value=0.0041 Score=37.74 Aligned_cols=34 Identities=18% Similarity=0.424 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee
Q 041916 102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV 136 (359)
Q Consensus 102 ~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 136 (359)
...|.+++|+|...+||.++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456899999999999999999999999998 4543
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.86 E-value=0.15 Score=46.38 Aligned_cols=188 Identities=12% Similarity=0.097 Sum_probs=90.6
Q ss_pred CCEEEEEe-cCCeEEEEECCC----CeEEEEEec-------CCCCeEEEEEcCCCCEEEEEe--C----CCeEEEEeCCC
Q 041916 30 HFLLASIN-KFGQLRYQDVTM----GEIVGNFRT-------GLGRTDVMRVNPFNGVVSLGH--S----GGTVTMWKPTT 91 (359)
Q Consensus 30 ~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~-------~~~~v~~~~~sp~~~~l~sg~--~----dg~v~lwd~~~ 91 (359)
.++|+..+ .++.|.|+|+.+ .+....+.. .-...+.+-.-|+|.+++++- . -|-+.++|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666665 678999999974 234444442 112344555568898888752 2 24588888877
Q ss_pred CcceEEEecc---CCCeEEEEEcCCCCEEEEEeC--------------------CCeEEEEEcCCceeeEecc----C-C
Q 041916 92 AAPLIKMLCH---QGPVSALAFHPNGHLMATSGK--------------------ECKIKIWDLRKYEVLQTLP----G-H 143 (359)
Q Consensus 92 ~~~~~~~~~h---~~~v~~i~~~~~~~~l~~~~~--------------------d~~i~iwd~~~~~~~~~~~----~-~ 143 (359)
......+... ...-..+.|.|..+.|+|+.. ..++.+||+.+.++++++. + -
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 7766666532 223467888998889988742 3579999999999999882 2 2
Q ss_pred ceeEEEc--CCc---eEEEEcCCcEEEEcCCCCCC----ccceeecc-----cCC--------CCcceEEEEEeeCCCEE
Q 041916 144 AKTLDFS--QKG---LLAVGTGSFVQILGDFSGSH----NYSRYMGH-----SMV--------KGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 144 i~~~~~s--~~g---l~~~~~d~~i~i~d~~~~~~----~~~~~~~~-----~~~--------~~~~v~~~~~~p~~~~l 201 (359)
+..+.|. |+. ++.+...++|..|--..+.. .+..+... ... -..-|++|..|.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 4556664 443 66666666666554212211 01111100 000 01247888899998866
Q ss_pred EEEcCCCeEEEEEcCCCCCccccccCC
Q 041916 202 GIGHSMGWSSILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 202 ~~~~~dg~~~i~~~~~~d~~~~~~~~~ 228 (359)
|++.-..|.++.|++.
T Consensus 327 -----------Yvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 327 -----------YVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -----------EEEETTTTEEEEEE-S
T ss_pred -----------EEEcccCCcEEEEecC
Confidence 4455567777778774
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.86 E-value=0.25 Score=42.42 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=84.6
Q ss_pred CeEEEEEecCCCEEEEEe---cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCcce
Q 041916 20 AVLKLQFLRNHFLLASIN---KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK-PTTAAPL 95 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd-~~~~~~~ 95 (359)
.+.+.++++++..+|... ....|.++.. +.....+. ....+....|++++...+....+....++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 358899999998776655 3345555554 33333322 223678889999988888777676667663 3333321
Q ss_pred -EEEec--cCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCC---c------eeeEec---cCCceeEEEcCCc-eEE
Q 041916 96 -IKMLC--HQGPVSALAFHPNGHLMATSG---KECKIKIWDLRK---Y------EVLQTL---PGHAKTLDFSQKG-LLA 156 (359)
Q Consensus 96 -~~~~~--h~~~v~~i~~~~~~~~l~~~~---~d~~i~iwd~~~---~------~~~~~~---~~~i~~~~~s~~g-l~~ 156 (359)
..+.. -.+.|+++.+||||..++... .++.|.+--+.. + .++... ...+..++|.+++ |++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 22221 122899999999999987766 346777765431 2 111111 2467899999999 555
Q ss_pred EE
Q 041916 157 VG 158 (359)
Q Consensus 157 ~~ 158 (359)
.+
T Consensus 182 ~~ 183 (253)
T PF10647_consen 182 LG 183 (253)
T ss_pred Ee
Confidence 44
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.86 E-value=0.29 Score=43.02 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=76.6
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-Ccee
Q 041916 58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEV 136 (359)
Q Consensus 58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~ 136 (359)
.-.+.+..+.-+++|.++++++......-||.-...-...-..-...|.++.|+|++.+.+++ ..|.|++=+.. ....
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 345678888899999999888776666788865322222222345789999999998876654 78888888722 2222
Q ss_pred eEe----c--cC-CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 137 LQT----L--PG-HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 137 ~~~----~--~~-~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
-.. . .+ .+..++|.+++ +.+++..|.|.+=. ..+ +.-+....-.. -.+.++.+.|.+..+-++.|.
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~-DgG-ktW~~~~~~~~-~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVST-DGG-KTWQKDRVGEN-VPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEES-STT-SS-EE-GGGTT-SSS---EEEEEETTEEEEE-S
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeC-CCC-ccceECccccC-CCCceEEEEEcCCCceEEECC
Confidence 111 1 12 36889999988 77888777665532 233 44333322111 122689999988766555544
No 389
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.00031 Score=67.67 Aligned_cols=145 Identities=18% Similarity=0.227 Sum_probs=88.3
Q ss_pred EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE-----------EcCCCCEEEEEeCCCeEEEE
Q 041916 22 LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR-----------VNPFNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 22 ~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-----------~sp~~~~l~sg~~dg~v~lw 87 (359)
.-+.|.| +..+++.+-.++.|++.+..+... ..+.+|...+..++ .||||..++.++.||.+..|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 5666766 456778888889999888764321 33445665554443 58999999999999998888
Q ss_pred eCC-----CCcceEEEeccC-CCeEEEEEcCC-------CC--EEEEEe-CCCeEEEEEcCCceeeEec-cCCceeEEEc
Q 041916 88 KPT-----TAAPLIKMLCHQ-GPVSALAFHPN-------GH--LMATSG-KECKIKIWDLRKYEVLQTL-PGHAKTLDFS 150 (359)
Q Consensus 88 d~~-----~~~~~~~~~~h~-~~v~~i~~~~~-------~~--~l~~~~-~d~~i~iwd~~~~~~~~~~-~~~i~~~~~s 150 (359)
.+. ...++..+..|. ++-.|.-|+.. |. ++++++ .+..+++|....++|+..+ ...+..+. -
T Consensus 263 Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~-p 341 (1283)
T KOG1916|consen 263 QIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVG-P 341 (1283)
T ss_pred eeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeec-C
Confidence 653 234555566665 33323224321 22 233433 4567999999888886333 33344444 2
Q ss_pred CCc--------------eEEEEcCCcEEEEcC
Q 041916 151 QKG--------------LLAVGTGSFVQILGD 168 (359)
Q Consensus 151 ~~g--------------l~~~~~d~~i~i~d~ 168 (359)
++| ++.-+.++.|.+|.-
T Consensus 342 ~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn 373 (1283)
T KOG1916|consen 342 HDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN 373 (1283)
T ss_pred CCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence 333 222345788888863
No 390
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.85 E-value=0.0049 Score=37.39 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~ 94 (359)
...|.+++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356999999999999999999999999998 4443
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.85 E-value=0.48 Score=45.43 Aligned_cols=153 Identities=11% Similarity=0.082 Sum_probs=93.2
Q ss_pred EEEEEecCCCEEEEEecC----------------CeEEEEECCCCeEEEEEecCCCCe---------EEEEEcCCCC---
Q 041916 22 LKLQFLRNHFLLASINKF----------------GQLRYQDVTMGEIVGNFRTGLGRT---------DVMRVNPFNG--- 73 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~sp~~~--- 73 (359)
..+++.|...+|+.+..+ .+|.-.|++||+....++.....+ .-+....+|.
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence 456777766666655411 278888999999988887522221 1222334565
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEE--------Ee---c-cCC-C-----------------e-----------EEEEEcC
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIK--------ML---C-HQG-P-----------------V-----------SALAFHP 112 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~--------~~---~-h~~-~-----------------v-----------~~i~~~~ 112 (359)
.++.+..+|.+++.|-.+++++.. +. . ..+ + + ..++++|
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp 396 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSP 396 (527)
T ss_pred EEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECC
Confidence 788899999999999999887521 10 0 000 0 0 1256666
Q ss_pred CCCEEEEEeCC---------------------------------CeEEEEEcCCceeeEeccC--C-ceeEEEcCCc-eE
Q 041916 113 NGHLMATSGKE---------------------------------CKIKIWDLRKYEVLQTLPG--H-AKTLDFSQKG-LL 155 (359)
Q Consensus 113 ~~~~l~~~~~d---------------------------------~~i~iwd~~~~~~~~~~~~--~-i~~~~~s~~g-l~ 155 (359)
+..+++....+ |.|.-+|+.+++.+..++. + ..+......+ ++
T Consensus 397 ~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf 476 (527)
T TIGR03075 397 KTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVF 476 (527)
T ss_pred CCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEE
Confidence 65555443322 4577888888887776632 1 1222222334 55
Q ss_pred EEEcCCcEEEEcCCCCCCc
Q 041916 156 AVGTGSFVQILGDFSGSHN 174 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~ 174 (359)
+++.+|.++.+|..++...
T Consensus 477 ~g~~~G~l~a~D~~TGe~l 495 (527)
T TIGR03075 477 YGTLEGYFKAFDAKTGEEL 495 (527)
T ss_pred EECCCCeEEEEECCCCCEe
Confidence 6666899999998888433
No 392
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.78 E-value=0.081 Score=50.86 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=72.1
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEeCCCeEEEEeCC--------
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVN--PFNGVVSLGHSGGTVTMWKPT-------- 90 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s--p~~~~l~sg~~dg~v~lwd~~-------- 90 (359)
.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|. |+++.+++.+....|.+|.-.
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 444445545544444455689999998877433222 346789999984 688888888899999998521
Q ss_pred -CCcceEEEe--ccC-CCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916 91 -TAAPLIKML--CHQ-GPVSALAFHPNGHLMATSGKECKIKIWDL 131 (359)
Q Consensus 91 -~~~~~~~~~--~h~-~~v~~i~~~~~~~~l~~~~~d~~i~iwd~ 131 (359)
+..++..+. .|. .+|.+..|.++|.+++.+| +.+.++|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 123344432 333 5799999999997665544 57888864
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.75 E-value=0.3 Score=44.53 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=79.1
Q ss_pred CCeEEEEEecCCCEEEEEe-----------cCC-eEEEEECCC--Ce--EEEEEecCCCCeEEEEEcCCCCEEEEEeCCC
Q 041916 19 GAVLKLQFLRNHFLLASIN-----------KFG-QLRYQDVTM--GE--IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG 82 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg 82 (359)
..+..|+|.++|+++++-. ..+ .|.+++-.+ |. ....+.......+.|++.+++ +++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3458999999999877642 223 677776543 33 234444444567889999988 444 44444
Q ss_pred eEEEEeCCCC-----cceEE---Eec----cCCCeEEEEEcCCCCEEEEEeCC-------------------CeEEEEEc
Q 041916 83 TVTMWKPTTA-----APLIK---MLC----HQGPVSALAFHPNGHLMATSGKE-------------------CKIKIWDL 131 (359)
Q Consensus 83 ~v~lwd~~~~-----~~~~~---~~~----h~~~v~~i~~~~~~~~l~~~~~d-------------------~~i~iwd~ 131 (359)
..++.|.... +.... +.. +......++|.|||.+.++.+.. +.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354321 21111 211 12346789999999876654421 34555565
Q ss_pred CCceeeEec-cC--CceeEEEcCCc-eEEEEc
Q 041916 132 RKYEVLQTL-PG--HAKTLDFSQKG-LLAVGT 159 (359)
Q Consensus 132 ~~~~~~~~~-~~--~i~~~~~s~~g-l~~~~~ 159 (359)
.++.. ..+ .+ ....++|+|+| ++++..
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 54432 222 22 34789999999 655543
No 394
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.1 Score=50.12 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=91.9
Q ss_pred CeEEEeCCCcEEEEec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYNRDGTELHCLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF----RTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~v~~~~~sp~~~~l 75 (359)
+|+||+.+|.++..+. .|..+-.+.|+.+..+|+ ...+|++.+|++- |...... ......|..+.|..+|-.+
T Consensus 65 ~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 65 YIRIFNISGQLLGRILWKHGELIGMGWSDDEELIC-VQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eEEEEeccccchHHHHhcCCCeeeecccCCceEEE-EeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEE
Confidence 4788998898876655 455669999998876655 5689999999985 4333321 1122234444444444222
Q ss_pred EEEeCCCeEEEE------------------------eCCCCc----ce---------------------EEEeccCCCeE
Q 041916 76 SLGHSGGTVTMW------------------------KPTTAA----PL---------------------IKMLCHQGPVS 106 (359)
Q Consensus 76 ~sg~~dg~v~lw------------------------d~~~~~----~~---------------------~~~~~h~~~v~ 106 (359)
.+ .+|.+.+- .+.... .+ ..+....+.+.
T Consensus 143 lt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 143 LT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred Ee--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 22 22222221 111100 00 00001113456
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc----CCceeEEEcCCceEEEEcCCcEEEEc
Q 041916 107 ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP----GHAKTLDFSQKGLLAVGTGSFVQILG 167 (359)
Q Consensus 107 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----~~i~~~~~s~~gl~~~~~d~~i~i~d 167 (359)
-+++||+..+|+.=..+|.|.+-++...+....+. .+...++|.-+.-++++....+.+..
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvg 285 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVG 285 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEc
Confidence 67778888888887888888887777666555552 23456777665544555555555554
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.71 E-value=0.32 Score=41.47 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=97.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|+.+| .+|+......-.... -.++...| .+..-.-.++...+||..+.+.+.++.-. +.=+.++ .++..|+.+
T Consensus 70 l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~dg~~Li~S 145 (264)
T PF05096_consen 70 LRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--SDGKRLIMS 145 (264)
T ss_dssp EEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--ECSSCEEEE
T ss_pred EEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--cCCCEEEEE
Confidence 67788 778776655544443 66666654 34444467899999999999999888754 4556777 456666666
Q ss_pred eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------------c
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------------P 141 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~ 141 (359)
.....++.+|+.+.+....+.... ..++-+.|- +|...|-.=....|...|..+|..+..+ .
T Consensus 146 DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~ 224 (264)
T PF05096_consen 146 DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK 224 (264)
T ss_dssp -SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence 667789999999887766665321 245566664 5666666656678888899998876654 0
Q ss_pred ------CCceeEEEcCCc--eEEEE
Q 041916 142 ------GHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 142 ------~~i~~~~~s~~g--l~~~~ 158 (359)
.-.+.|++.|.+ +++.|
T Consensus 225 ~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccCCeeEeEeEeCCCCEEEEEe
Confidence 124889998877 55555
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.0047 Score=61.01 Aligned_cols=70 Identities=26% Similarity=0.486 Sum_probs=55.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 71 FNGVVSLGHSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 71 ~~~~l~sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
.+..++.|+..|.|...|++.. .+...=..-.++|++++|+.+|..++.|-.+|.|.+||+..+++++.+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 3456888999999999988753 222221234578999999999999999999999999999998887776
No 397
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.0065 Score=49.71 Aligned_cols=95 Identities=14% Similarity=0.036 Sum_probs=56.2
Q ss_pred CCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEE-EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE
Q 041916 30 HFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMR-VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA 107 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~-~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~ 107 (359)
+..|+.|+.+|.|.+|+.... .....+.....+|.++- --.++.+..+++.||.|+.|++.-.+.+.....|..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~---- 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF---- 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC----
Confidence 466888999999999998621 21112222223333332 223456888999999999999876655544444441
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916 108 LAFHPNGHLMATSGKECKIKIWDLR 132 (359)
Q Consensus 108 i~~~~~~~~l~~~~~d~~i~iwd~~ 132 (359)
-++..+++.+.|+.|.+|++.
T Consensus 146 ----~~~e~~ivv~sd~~i~~a~~S 166 (238)
T KOG2444|consen 146 ----ESGEELIVVGSDEFLKIADTS 166 (238)
T ss_pred ----CCcceeEEecCCceEEeeccc
Confidence 234445555555556555543
No 398
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.64 E-value=0.24 Score=46.03 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----------eE
Q 041916 63 TDVMRVNPFNGVVSLG-HSGG----TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----------KI 126 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg-~~dg----~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----------~i 126 (359)
+..+.+||+|+++|.+ +..| .|+++|+.+++.+....... ....++|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999988765 3334 59999999997654321111 123499999988876665332 47
Q ss_pred EEEEcCCce----eeEeccC-C--ceeEEEcCCc--eE-EEEcC---CcEEEEcCCCC
Q 041916 127 KIWDLRKYE----VLQTLPG-H--AKTLDFSQKG--LL-AVGTG---SFVQILGDFSG 171 (359)
Q Consensus 127 ~iwd~~~~~----~~~~~~~-~--i~~~~~s~~g--l~-~~~~d---~~i~i~d~~~~ 171 (359)
+.|.+.+.. ++..-.. . ...+..++++ ++ ..... ..+.+.++...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 888887653 3333322 2 4578889999 33 33332 45778876553
No 399
>PHA02713 hypothetical protein; Provisional
Probab=96.63 E-value=0.074 Score=51.34 Aligned_cols=139 Identities=8% Similarity=0.047 Sum_probs=72.0
Q ss_pred CCCEEEEEecCC-----eEEEEECCCCeEE--EEEecCCCCeEEEEEcCCCCEEEEEeCCC-------------------
Q 041916 29 NHFLLASINKFG-----QLRYQDVTMGEIV--GNFRTGLGRTDVMRVNPFNGVVSLGHSGG------------------- 82 (359)
Q Consensus 29 ~~~~l~s~~~dg-----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp~~~~l~sg~~dg------------------- 82 (359)
++.+.+.||.++ ++..||..+..-. ..+.........++ -+|.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccc
Confidence 567777787653 4888998765422 11111111111222 2577777777653
Q ss_pred ----eEEEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCC---ceeeEeccCC--ce
Q 041916 83 ----TVTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRK---YEVLQTLPGH--AK 145 (359)
Q Consensus 83 ----~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~---~~~~~~~~~~--i~ 145 (359)
.|..||+.+.+ .+..+.........++ -+|...+.||.+ ..+..||..+ +..+..++.+ ..
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 47778877653 2222211111111222 246666666654 2467899886 3444444322 22
Q ss_pred eEEEcCCc-eEEEEcCC--cEEEEcCCCC
Q 041916 146 TLDFSQKG-LLAVGTGS--FVQILGDFSG 171 (359)
Q Consensus 146 ~~~~s~~g-l~~~~~d~--~i~i~d~~~~ 171 (359)
+++...+- +++||.++ .+..||..++
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCcccc
Confidence 33333233 66667676 6777886654
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.4 Score=41.18 Aligned_cols=149 Identities=12% Similarity=0.152 Sum_probs=100.1
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE-
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI- 96 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~- 96 (359)
..+.++.|+|+.+.|++..+...-.|+=..+|+.+.++.-. -...-.+.+..+|.+.++--.++.+.++.+.....+.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~ 165 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS 165 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence 34589999999988888777777777777789988887631 2334567888888888877788888888766542221
Q ss_pred ------EEe--cc-CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-ee--Eec----------cCCceeEEEcCCc-
Q 041916 97 ------KML--CH-QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VL--QTL----------PGHAKTLDFSQKG- 153 (359)
Q Consensus 97 ------~~~--~h-~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~--~~~----------~~~i~~~~~s~~g- 153 (359)
.+. .+ +.....++|+|..+.|+.+-.-.-+.||.+..+. .+ +.. -..++++.|++..
T Consensus 166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~ 245 (316)
T COG3204 166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITN 245 (316)
T ss_pred ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCC
Confidence 111 12 4457789999998888888877777777665332 11 110 1246788888654
Q ss_pred -eEEEEc-CCcEEEEc
Q 041916 154 -LLAVGT-GSFVQILG 167 (359)
Q Consensus 154 -l~~~~~-d~~i~i~d 167 (359)
+++.|. ++.+.-.|
T Consensus 246 ~LLVLS~ESr~l~Evd 261 (316)
T COG3204 246 SLLVLSDESRRLLEVD 261 (316)
T ss_pred cEEEEecCCceEEEEe
Confidence 655554 45666666
No 401
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.60 E-value=0.1 Score=43.12 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=72.9
Q ss_pred eccCCCe-EEEEEecCCCEEEEE-ecCCeEEEEE--CCCCe-----EEEEEec----CCCCeEEEEEcCCCCEEEEEeCC
Q 041916 15 LKEHGAV-LKLQFLRNHFLLASI-NKFGQLRYQD--VTMGE-----IVGNFRT----GLGRTDVMRVNPFNGVVSLGHSG 81 (359)
Q Consensus 15 l~~h~~~-~~l~~s~~~~~l~s~-~~dg~i~iwd--~~~~~-----~~~~~~~----~~~~v~~~~~sp~~~~l~sg~~d 81 (359)
+...-++ +.++|+.+.+.+... +.+-+|.-|| ..+|. .+..++. .....-.++...+|.+.++.-..
T Consensus 153 i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng 232 (310)
T KOG4499|consen 153 IWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG 232 (310)
T ss_pred eehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC
Confidence 3334455 889999888766544 5566787788 55654 2333332 11123345556678888888899
Q ss_pred CeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEE
Q 041916 82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATS 120 (359)
Q Consensus 82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~ 120 (359)
|+|...|+.+|+.+..+.-....|+|.+|-- +-..|++.
T Consensus 233 ~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 233 GTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred cEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 9999999999999999988888999999953 33344443
No 402
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.53 E-value=0.42 Score=40.64 Aligned_cols=186 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE--
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM-- 98 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~-- 98 (359)
+..++-+|||..-+++...+.|--.|..+|+....--+.....+.+..-|||...++-+.. -|.-.|..+... ..|
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~l 141 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPL 141 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeec
Confidence 3788889999888888888899999999998766555555667888889999877765444 455566655432 222
Q ss_pred --eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916 99 --LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 99 --~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~ 170 (359)
..-........|++.|++.+++.. |.---.|... ..+..+ ......|+..|+| .++.-.++.|-..|...
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 223456788999999999888762 2111111111 123333 2346889999999 55555677888888666
Q ss_pred CCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 171 GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+... .+..... ....-..+--+|.+..-++....+....+
T Consensus 220 ~~ae--v~p~P~~-~~~gsRriwsdpig~~wittwg~g~l~rf 259 (353)
T COG4257 220 GHAE--VVPQPNA-LKAGSRRIWSDPIGRAWITTWGTGSLHRF 259 (353)
T ss_pred CCcc--eecCCCc-ccccccccccCccCcEEEeccCCceeeEe
Confidence 5221 1111110 01123444456677655554444433333
No 403
>PRK10115 protease 2; Provisional
Probab=96.51 E-value=1 Score=44.78 Aligned_cols=187 Identities=8% Similarity=-0.011 Sum_probs=100.7
Q ss_pred EEEEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCC
Q 041916 22 LKLQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPT 90 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~ 90 (359)
..+.++|||++|+.+.. ...|++.|+.+|..+...-.... ..++|++|+..|+.+..+ ..|..+++.
T Consensus 130 ~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred eEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 66789999998876533 34689999988864322211211 459999998766655432 367888888
Q ss_pred CC--cceEEEeccCCCeE-EEEEcCCCCEEEEEeC---CCeEEEEEcC--CceeeEec--c-CCceeEEEcCCc-eEEEE
Q 041916 91 TA--APLIKMLCHQGPVS-ALAFHPNGHLMATSGK---ECKIKIWDLR--KYEVLQTL--P-GHAKTLDFSQKG-LLAVG 158 (359)
Q Consensus 91 ~~--~~~~~~~~h~~~v~-~i~~~~~~~~l~~~~~---d~~i~iwd~~--~~~~~~~~--~-~~i~~~~~s~~g-l~~~~ 158 (359)
++ +-...+........ .+..+.++.+++..+. ++.+.+|+.. .+.+...+ . +....+. +..+ ++..+
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~t 286 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRS 286 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEE
Confidence 77 33334443333333 3333448887655443 4578888853 33322222 2 2222222 2223 43333
Q ss_pred c-C---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 159 T-G---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 159 ~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
. + ..|...++... .....+..+. ....|..+.++ ...++++...+|...+++.
T Consensus 287 n~~~~~~~l~~~~~~~~-~~~~~l~~~~--~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 287 NRHGKNFGLYRTRVRDE-QQWEELIPPR--ENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred cCCCCCceEEEecCCCc-ccCeEEECCC--CCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 2 2 23444443321 2233444442 23368888887 3345556666776666554
No 404
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.47 E-value=0.16 Score=47.66 Aligned_cols=137 Identities=12% Similarity=0.079 Sum_probs=77.8
Q ss_pred CCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC----CCEEEEEeCCCeEEEEEcCC-
Q 041916 61 GRTDVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN----GHLMATSGKECKIKIWDLRK- 133 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~~~~~d~~i~iwd~~~- 133 (359)
.+++.++|....+.+++.- .+|.+.+=|. ..+ +.-..|..++|.|- ..-+++......|.+|.+-.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 4789999964334444431 2333332221 122 23345889999983 33455555567899998852
Q ss_pred ----ceeeEe----ccC----CceeEEEcCCc-eEEEEcCCcE-EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916 134 ----YEVLQT----LPG----HAKTLDFSQKG-LLAVGTGSFV-QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 134 ----~~~~~~----~~~----~i~~~~~s~~g-l~~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
++.+.. +.. -...+.|+|.. ++++-....+ .+++...+...+..-..- .+.|.|.+|.+||+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKDGQ 168 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCcCC
Confidence 222221 111 23678899998 6555444334 444544443333322222 23799999999999
Q ss_pred EEEEEcCCC
Q 041916 200 VLGIGHSMG 208 (359)
Q Consensus 200 ~l~~~~~dg 208 (359)
.|+++-...
T Consensus 169 RLVVAvGSs 177 (671)
T PF15390_consen 169 RLVVAVGSS 177 (671)
T ss_pred EEEEEeCCe
Confidence 888776554
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.38 E-value=0.46 Score=43.36 Aligned_cols=140 Identities=14% Similarity=0.049 Sum_probs=76.6
Q ss_pred CCeEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCC--Ccc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCC
Q 041916 61 GRTDVMRVNPFNGVVSLGH-----------SGG-TVTMWKPTT--AAP--LIKMLCHQGPVSALAFHPNGHLMATSGKEC 124 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~-----------~dg-~v~lwd~~~--~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~ 124 (359)
.....|+|.++|+++++-. ..+ .|.+++-.. +.. ...+.......+.+++.++| |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 4567899999999877653 223 677776442 332 22333333446889999998 44444444
Q ss_pred eEEEEEcCC-------cee-eEeccC-------CceeEEEcCCc-e-EEEEcC-------------------CcEEEEcC
Q 041916 125 KIKIWDLRK-------YEV-LQTLPG-------HAKTLDFSQKG-L-LAVGTG-------------------SFVQILGD 168 (359)
Q Consensus 125 ~i~iwd~~~-------~~~-~~~~~~-------~i~~~~~s~~g-l-~~~~~d-------------------~~i~i~d~ 168 (359)
.+++.|... .+. +..+.. ....++|.|+| | ++.+.. +.|.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 333445432 111 222311 25789999999 4 333311 33444443
Q ss_pred CCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 169 FSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
..+ ....+. .. ......++|+|+|+++++-..++
T Consensus 172 dg~--~~e~~a-~G---~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 172 DGG--KLRVVA-HG---FQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred CCC--eEEEEe-cC---cCCCccceECCCCCEEEEccCCC
Confidence 322 222222 11 11467899999998887755444
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.34 E-value=0.39 Score=45.20 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=71.0
Q ss_pred CCeEEEEEecC----C-CEEEEEecCCeEEEEECC-----CCeEEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCe
Q 041916 19 GAVLKLQFLRN----H-FLLASINKFGQLRYQDVT-----MGEIVGNFRTGLG-----RTDVMRVNPFNGVVSLGHSGGT 83 (359)
Q Consensus 19 ~~~~~l~~s~~----~-~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~sg~~dg~ 83 (359)
..+.+++|.|- . .+||+ .....|.||-+. +++.+.+-..+.. -...+.|+|....|++-.....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 34588999984 2 45554 557799999985 2333333222211 1356789999888777655544
Q ss_pred EEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcC
Q 041916 84 VTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKE-CKIKIWDLR 132 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d-~~i~iwd~~ 132 (359)
-.++++.......... ...+.|.|.+|.+||+.|+++-.. =.-++||-.
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 4456665443332222 456889999999999997765433 346788754
No 407
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.25 Score=45.66 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 63 TDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
|..+..++.|..++..+.+|.+.++=
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEc
Confidence 45566788888888888888665543
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.33 Score=44.17 Aligned_cols=137 Identities=7% Similarity=0.091 Sum_probs=84.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
+.+-|...++.|++. ..|.+.-|-+... -++..-....|+|.+|.|++|.+.||+--.|.+|-+++....++...+
T Consensus 26 ngvFfDDaNkqlfav-rSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAV-RSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEE-ecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 344454444444433 3344555544322 122222245679999999999999999999999999998544433222
Q ss_pred -------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 141 -------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 141 -------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
...|....|+.+. ++... +.-+.+|........+.....|.. .|.-..|+++...+..++.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e~A~i~-~~G~e~y~v~pekrslRlVks~~~----nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNL----NVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHhccCcceeEEEEEecCeeEEEEe-cCCeEEEEEchhhhhhhhhhhccc----CccEEEEccccceEeeecc
Confidence 3358899999887 44444 344566654444344555555554 6777888888876554443
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.30 E-value=1 Score=43.24 Aligned_cols=168 Identities=17% Similarity=0.197 Sum_probs=98.7
Q ss_pred eEEEe-CCCcEEEEeccCCC--eE----------EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGA--VL----------KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMR 67 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~--~~----------~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~ 67 (359)
|+-+| .+|+++-.+..... .. .+++ .+..++.++.|+.|.-+|..+|+.+......... -..+.
T Consensus 81 v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~t 158 (527)
T TIGR03075 81 VYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTIT 158 (527)
T ss_pred EEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccccccccccccc
Confidence 44556 67777766543211 11 1122 2345677788999999999999998776532110 01111
Q ss_pred EcC--CCCEEEEEe------CCCeEEEEeCCCCcceEEEeccCC-------------------------------Ce-EE
Q 041916 68 VNP--FNGVVSLGH------SGGTVTMWKPTTAAPLIKMLCHQG-------------------------------PV-SA 107 (359)
Q Consensus 68 ~sp--~~~~l~sg~------~dg~v~lwd~~~~~~~~~~~~h~~-------------------------------~v-~~ 107 (359)
-+| .+..+++++ .+|.|..+|..+|+.+..+..-.. .+ ..
T Consensus 159 ssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~ 238 (527)
T TIGR03075 159 AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGT 238 (527)
T ss_pred CCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCc
Confidence 122 123444443 268999999999987766542110 11 13
Q ss_pred EEEcCCCCEEEEEeCC-----C-----------eEEEEEcCCceeeEecc---C---------CceeEEEcCCc-----e
Q 041916 108 LAFHPNGHLMATSGKE-----C-----------KIKIWDLRKYEVLQTLP---G---------HAKTLDFSQKG-----L 154 (359)
Q Consensus 108 i~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~---~---------~i~~~~~s~~g-----l 154 (359)
++++|...+++.+..+ + +|.-.|+.+|+..-.+. . ...-+.+..+| +
T Consensus 239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 4677766677666522 2 67788999998876661 1 12223333454 4
Q ss_pred EEEEcCCcEEEEcCCCC
Q 041916 155 LAVGTGSFVQILGDFSG 171 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~ 171 (359)
+.++.+|.+++.|..++
T Consensus 319 ~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 319 AHADRNGFFYVLDRTNG 335 (527)
T ss_pred EEeCCCceEEEEECCCC
Confidence 56677899999997776
No 410
>PRK13684 Ycf48-like protein; Provisional
Probab=96.25 E-value=0.83 Score=41.06 Aligned_cols=140 Identities=17% Similarity=0.240 Sum_probs=78.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEE-EeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSGGTVTM-WKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL 137 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~dg~v~l-wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 137 (359)
.+.+.++.+.|++.++++| ..|.+.. +| ..++.-..+. .-...++++.+.|++..++++ ..|.+.+=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 3568889999988766555 4555442 22 1122122222 334578899999998876665 4576653223333221
Q ss_pred Ee--cc-----CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 138 QT--LP-----GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 138 ~~--~~-----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.. .+ ..+.++.+.|++ +++++.+|.+..=. ..+ ........... ....++.+.|..++..+++|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~-d~G-~tW~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSK-DGG-KTWEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEeC-CCC-CCCeECCcCCC-CCcceEEEEEeCCCceEEECC
Confidence 11 11 246788999988 88888888665422 222 33333322111 112588888887776655443
No 411
>PRK13684 Ycf48-like protein; Provisional
Probab=96.23 E-value=0.79 Score=41.20 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=81.6
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
.++.+.|++.+++++. .|.+..-.-..++.-..+. .....++++.+.|++..+++| ..|.+.+=+.+.+..-.....
T Consensus 176 ~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~ 253 (334)
T PRK13684 176 RNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII 253 (334)
T ss_pred EEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC
Confidence 7888889887766654 5555432112222222222 234578999999999877765 457664323343332221111
Q ss_pred ----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc---eeeE---eccCCceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916 101 ----HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY---EVLQ---TLPGHAKTLDFSQKG-LLAVGTGSFVQILG 167 (359)
Q Consensus 101 ----h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~---~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d 167 (359)
....+.++.+.|++..+++ +.+|.|.. -...+ +.+. .++.....+.|..++ .++++..|.|--|+
T Consensus 254 ~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 254 PEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 1234788999998775554 45675543 33333 3322 123346677776666 88888889988886
No 412
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=0.044 Score=54.83 Aligned_cols=140 Identities=7% Similarity=-0.035 Sum_probs=90.0
Q ss_pred EEeccCCCe--EEEEEecCCCEEEE--EecCCeEEEEECCCCeEE-----EEEec------CCCCeEEEEEcCCC-CEEE
Q 041916 13 HCLKEHGAV--LKLQFLRNHFLLAS--INKFGQLRYQDVTMGEIV-----GNFRT------GLGRTDVMRVNPFN-GVVS 76 (359)
Q Consensus 13 ~~l~~h~~~--~~l~~s~~~~~l~s--~~~dg~i~iwd~~~~~~~-----~~~~~------~~~~v~~~~~sp~~-~~l~ 76 (359)
.++.-|..+ ..+..++|+...++ .+++-.|..||+.+-..- .-+.. ......++.|+|.- ...+
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 455556664 66677777655433 344558899998753211 11111 22346688999864 3456
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cCCceeEEE
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PGHAKTLDF 149 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~ 149 (359)
....|+.|.+..+........--.-...+++++|+|.|..++.|-..|++.-|-..- +....+ ...|.+|+|
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEE
Confidence 677899998887664433222112344679999999999999999999999886543 222222 356899999
Q ss_pred cCCc
Q 041916 150 SQKG 153 (359)
Q Consensus 150 s~~g 153 (359)
-...
T Consensus 252 l~t~ 255 (1405)
T KOG3630|consen 252 LSTQ 255 (1405)
T ss_pred ecce
Confidence 7766
No 413
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=96.05 E-value=0.38 Score=45.51 Aligned_cols=134 Identities=15% Similarity=0.188 Sum_probs=75.0
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC---eEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR---TDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---v~~~~~sp~~~~l~s 77 (359)
++++|.+|.....+...... ..+.+.++|.+++..+ ..+..+|+. |+.+..+....+. -+.+..-|+|++|+.
T Consensus 130 ~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l 206 (477)
T PF05935_consen 130 TYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLIL 206 (477)
T ss_dssp EEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEE
T ss_pred EEEECCCccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEE
Confidence 57888889888777654443 3377889998887655 789999985 7777666544322 467888899998887
Q ss_pred Ee--------------CCCeEEEEeCCCCcceEEEe--ccC-------------------------CCeEEEEEcC-CCC
Q 041916 78 GH--------------SGGTVTMWKPTTAAPLIKML--CHQ-------------------------GPVSALAFHP-NGH 115 (359)
Q Consensus 78 g~--------------~dg~v~lwd~~~~~~~~~~~--~h~-------------------------~~v~~i~~~~-~~~ 115 (359)
+. .|. |..+| .+|+.+..+. .|- --++++.+.+ ++.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~ 284 (477)
T PF05935_consen 207 ASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDS 284 (477)
T ss_dssp EEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTE
T ss_pred EeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCe
Confidence 77 222 44445 5555444432 110 1368899998 444
Q ss_pred EEEEEeCCCeEEEEEcCCceeeEec
Q 041916 116 LMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 116 ~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
+|+++-.-..|...|.++++....+
T Consensus 285 iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 285 IIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp EEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred EEEEcCcceEEEEEECCCCcEEEEe
Confidence 4554444558999998888877666
No 414
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.85 E-value=0.21 Score=46.03 Aligned_cols=142 Identities=16% Similarity=0.199 Sum_probs=90.9
Q ss_pred EecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEeCCCeEEEEeCCCCcceEE
Q 041916 26 FLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-------VVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 26 ~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-------~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
...+..+|+ .|+.-..++-.|+..|+.+..+..|..- .+.|.|+.. .-++|-.+..|.-.|++.......
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~ 552 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK 552 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence 334445544 4555667888899999999999988654 678888642 233466677777778775432111
Q ss_pred EeccCCCeEEEEEcC----CCCEEEEEeCCCeEEEEEcCCc---eeeEeccCCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916 98 MLCHQGPVSALAFHP----NGHLMATSGKECKIKIWDLRKY---EVLQTLPGHAKTLDFSQKG-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~----~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~ 169 (359)
.......++--.|+. .+.++|++|..|-|++||--.- ..+..+...|..+..+.+| .+.+....+|-+.|+.
T Consensus 553 v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 553 VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 112223333333332 4458999999999999996432 3344445578899999999 5555556777777753
No 415
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.81 E-value=0.21 Score=48.25 Aligned_cols=139 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCCEEEEEecC------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCc-
Q 041916 29 NHFLLASINKF------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPTTAA- 93 (359)
Q Consensus 29 ~~~~l~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~~~~- 93 (359)
.+.+++.||.+ ..+..||..++.-.. .+... ..-.+++.. ++.+.++|+.| .++..||+.+.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45677777776 467889988774322 22211 123344443 45788888888 357788887654
Q ss_pred -ceEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCce--eeEeccCCceeEEE-cCCc--eEEEEcC--
Q 041916 94 -PLIKMLCHQGPVSALAFHPNGHLMATSGKEC-----KIKIWDLRKYE--VLQTLPGHAKTLDF-SQKG--LLAVGTG-- 160 (359)
Q Consensus 94 -~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~~--~~~~~~~~i~~~~~-s~~g--l~~~~~d-- 160 (359)
.+..+........... -+|.+.++||.|| +|-.||..+.+ .+..+......... .-+| ++++|.+
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 2222222222222222 2677888898886 47778877643 33333222222222 2234 4455533
Q ss_pred ----CcEEEEcCCCC
Q 041916 161 ----SFVQILGDFSG 171 (359)
Q Consensus 161 ----~~i~i~d~~~~ 171 (359)
..+..||..++
T Consensus 440 ~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 440 SNCLNSVECYDPETN 454 (571)
T ss_pred ccccceEEEEcCCCC
Confidence 46788887665
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.73 E-value=0.47 Score=46.99 Aligned_cols=86 Identities=13% Similarity=0.220 Sum_probs=56.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Ccc---eEEE--------eccCCCeEEEEEcCC---CCEEE
Q 041916 62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTT---------AAP---LIKM--------LCHQGPVSALAFHPN---GHLMA 118 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~---------~~~---~~~~--------~~h~~~v~~i~~~~~---~~~l~ 118 (359)
.|..+..||+|.+++..|..|.+.+.=++. +.. ..++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 477889999999999888877544432221 111 1111 123457889999995 57888
Q ss_pred EEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc
Q 041916 119 TSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG 153 (359)
Q Consensus 119 ~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g 153 (359)
+-+.|+++++||+.... .+...+.+++..
T Consensus 166 vLtsdn~lR~y~~~~~~------~p~~v~~~~~~~ 194 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ------HPWQVLSLSPGE 194 (717)
T ss_pred EEecCCEEEEEecCCCC------CCeEEEEcccCc
Confidence 88999999999995422 344555666544
No 417
>PHA03098 kelch-like protein; Provisional
Probab=95.70 E-value=0.84 Score=44.01 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=52.4
Q ss_pred cCCCEEEEEecCC------eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcc
Q 041916 28 RNHFLLASINKFG------QLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTAAP 94 (359)
Q Consensus 28 ~~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~~~ 94 (359)
.++.+++.||.++ .+..||..++..... +.........+. -++.+++.|+.+ ..+..||+.+.+-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3456666776532 577888877654221 111111122222 256777778765 3477888776531
Q ss_pred e--EEEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCCce
Q 041916 95 L--IKMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRKYE 135 (359)
Q Consensus 95 ~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~~~ 135 (359)
. ..+...... .+++ .-++...+.||.+ ..+..||+.+.+
T Consensus 371 ~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 371 REEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 1 111111111 1222 2256666666632 468889987644
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.67 E-value=2.7 Score=42.18 Aligned_cols=216 Identities=12% Similarity=0.080 Sum_probs=126.1
Q ss_pred eEEEe-CCCcEEEEec--cCCCe---EEEEEecC-CCEEEEEec----------CCeEEEEECCCCeEEEEEecC--CCC
Q 041916 2 PYIYN-RDGTELHCLK--EHGAV---LKLQFLRN-HFLLASINK----------FGQLRYQDVTMGEIVGNFRTG--LGR 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~--~h~~~---~~l~~s~~-~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~--~~~ 62 (359)
++++| ++-+.++..+ ....+ .++.|..| +.++++|.. .|.|.+|.+..++.+..+..+ .+.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 67788 5555543322 22223 33447666 667777653 478888887764444443332 234
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce--eeE--
Q 041916 63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE--VLQ-- 138 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~-- 138 (359)
|.++..- +|+++| +-+..|++|+..+.+.++.-..+..++..+...-.|..+++|..-+++.+.-.+..+ ..-
T Consensus 832 v~aL~~f-ngkllA--~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA 908 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLA--GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA 908 (1096)
T ss_pred eeehhhh-CCeEEE--ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee
Confidence 4444321 345554 456789999998886666555777888889888899999999877777766554422 221
Q ss_pred -ec-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCC------ccce---eeccc----CCCCcceEE--EEEeeCCCE
Q 041916 139 -TL-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSH------NYSR---YMGHS----MVKGYQIGK--VSFRPYEDV 200 (359)
Q Consensus 139 -~~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~------~~~~---~~~~~----~~~~~~v~~--~~~~p~~~~ 200 (359)
.+ +...+++.+-.+. ++.+..+|.+.+....+... .... +.-+. ..++.-|.. -.-+|.+.-
T Consensus 909 rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~~~~~~ 988 (1096)
T KOG1897|consen 909 RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMIPLEPK 988 (1096)
T ss_pred hhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccccCCCCc
Confidence 12 4466777777666 55555667777664332110 1111 11000 001222332 133455667
Q ss_pred EEEEcCCCeEEEEEcCCCCC
Q 041916 201 LGIGHSMGWSSILVPGSGEP 220 (359)
Q Consensus 201 l~~~~~dg~~~i~~~~~~d~ 220 (359)
+..|+.+|.+-++.+...|.
T Consensus 989 vlfgTv~GsIG~i~sl~~d~ 1008 (1096)
T KOG1897|consen 989 VLFGTVNGSIGIIVSLPQDW 1008 (1096)
T ss_pred EEEEEccceEEEEEecCcch
Confidence 89999999998888766443
No 419
>PHA03098 kelch-like protein; Provisional
Probab=95.60 E-value=0.93 Score=43.69 Aligned_cols=103 Identities=9% Similarity=-0.044 Sum_probs=51.3
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcc-
Q 041916 29 NHFLLASINKF-----GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPTTAAP- 94 (359)
Q Consensus 29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~~~~~- 94 (359)
++.+++.||.+ ..+..||..++.-.. .+...... .+++ .-++.+++.|+.+ ..+..||+.+.+-
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56777777764 357788887654221 11111111 1222 2356667777632 3588889876431
Q ss_pred -eEEEeccCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCce
Q 041916 95 -LIKMLCHQGPVSALAFHPNGHLMATSGKE--------CKIKIWDLRKYE 135 (359)
Q Consensus 95 -~~~~~~h~~~v~~i~~~~~~~~l~~~~~d--------~~i~iwd~~~~~ 135 (359)
+..+....... +++ ..++..++.||.+ ..+.+||..+.+
T Consensus 420 ~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 420 KGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred ecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 11111111111 222 2255566666542 238889987654
No 420
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.57 E-value=1.9 Score=39.58 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=80.3
Q ss_pred EEEEEecCCCEEEEEec------CCeEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEEEEEeC------------
Q 041916 22 LKLQFLRNHFLLASINK------FGQLRYQDVTMGEIVGNFRTGL---GRTDVMRVNPFNGVVSLGHS------------ 80 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~sg~~------------ 80 (359)
..+...|+|..++|+-. -|-+.++|-.+.+......... ..-..+.|.|..+.++|...
T Consensus 133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 55666788988887522 3678899988888877776532 23456788998888888642
Q ss_pred --------CCeEEEEeCCCCcceEEEeccC-C-CeEEEEEc--CCCCE-EEEEeCCCeEEEEEc-CCce----eeEec--
Q 041916 81 --------GGTVTMWKPTTAAPLIKMLCHQ-G-PVSALAFH--PNGHL-MATSGKECKIKIWDL-RKYE----VLQTL-- 140 (359)
Q Consensus 81 --------dg~v~lwd~~~~~~~~~~~~h~-~-~v~~i~~~--~~~~~-l~~~~~d~~i~iwd~-~~~~----~~~~~-- 140 (359)
..++.+||+.+.+.++++.-.. + ....|.|. |+..+ ++.+....+|..|-- ..+. .+..+
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 3579999999999999987432 2 24556664 55555 444444556665533 2221 12121
Q ss_pred ------------------cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCc
Q 041916 141 ------------------PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHN 174 (359)
Q Consensus 141 ------------------~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~ 174 (359)
++-|+.|.+|.|. |++++ ..|.|+.||+.....+
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCC
Confidence 2336899999988 55555 5799999997664333
No 421
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.47 E-value=1.3 Score=39.05 Aligned_cols=131 Identities=8% Similarity=0.117 Sum_probs=89.6
Q ss_pred eEEEeCCCcEEEEeccCC-------------CeEEEEEecCCCEEEEEe------------------cCCeEEEEECCCC
Q 041916 2 PYIYNRDGTELHCLKEHG-------------AVLKLQFLRNHFLLASIN------------------KFGQLRYQDVTMG 50 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~-------------~~~~l~~s~~~~~l~s~~------------------~dg~i~iwd~~~~ 50 (359)
+.+.|.+.+++..+.... +...+.+.++|..|++.- .|+.+.-.|+.||
T Consensus 27 ~~~lD~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~Tg 106 (299)
T PF14269_consen 27 YVILDSSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETG 106 (299)
T ss_pred EEEECCCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCC
Confidence 456777788887777665 236677788888877321 2566777788888
Q ss_pred eEEEEEec--CC-------------------------CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCC
Q 041916 51 EIVGNFRT--GL-------------------------GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG 103 (359)
Q Consensus 51 ~~~~~~~~--~~-------------------------~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~ 103 (359)
+.+..+.. |- --+++|...++|.+|+|.-.-.+|.+.|..+++.+..+.+..+
T Consensus 107 evlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~ 186 (299)
T PF14269_consen 107 EVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN 186 (299)
T ss_pred CEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC
Confidence 87776531 10 0256777778889999888888899999999988888765422
Q ss_pred -C----eEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916 104 -P----VSALAFHPNGHLMATSGKECKIKIWDLR 132 (359)
Q Consensus 104 -~----v~~i~~~~~~~~l~~~~~d~~i~iwd~~ 132 (359)
. -...+|-.+-+++-.+..++.|.++|=.
T Consensus 187 ~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 187 SDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred CcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 1 1124444455566556778899999863
No 422
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.45 E-value=3.2 Score=41.62 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=85.8
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE-------------EEEEcC--CCCEEEEEeC----------CCeE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD-------------VMRVNP--FNGVVSLGHS----------GGTV 84 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-------------~~~~sp--~~~~l~sg~~----------dg~v 84 (359)
+..++.++.|+.|.-.|..+|+.+..+... +.|. .+.-+| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 347788888999999999999988776421 1111 111122 1345666643 6889
Q ss_pred EEEeCCCCcceEEEecc---------CC--------Ce-EEEEEcCCCCEEEEEe------------------CCCeEEE
Q 041916 85 TMWKPTTAAPLIKMLCH---------QG--------PV-SALAFHPNGHLMATSG------------------KECKIKI 128 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~h---------~~--------~v-~~i~~~~~~~~l~~~~------------------~d~~i~i 128 (359)
+-+|+.+|+.+..+..- .+ .+ ..++++|...+++.+. ..++|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 99999999988776521 00 11 2345555544544432 1346777
Q ss_pred EEcCCceeeEeccC------------CceeEEEcC-Cc-----eEEEEcCCcEEEEcCCCC
Q 041916 129 WDLRKYEVLQTLPG------------HAKTLDFSQ-KG-----LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 129 wd~~~~~~~~~~~~------------~i~~~~~s~-~g-----l~~~~~d~~i~i~d~~~~ 171 (359)
.|+.+|+..-.+.. ...-+.+.. +| ++.++.+|.++++|..++
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG 479 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTG 479 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCC
Confidence 78888887665521 122222322 44 556677899999997776
No 423
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.36 E-value=0.023 Score=46.56 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=49.2
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEE--eCCCeEEEEeCC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLG--HSGGTVTMWKPT 90 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg--~~dg~v~lwd~~ 90 (359)
+.+.-..++.+.++++.||.|+.|++..++.+.....|. .++..+..+..+..++++ |.|..++.|++.
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 333334456788999999999999999988888777777 555555555555666666 666666777654
No 424
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.34 E-value=2.2 Score=39.29 Aligned_cols=137 Identities=9% Similarity=0.006 Sum_probs=78.1
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCCeEE-EEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-----ceE
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMGEIV-GNF-RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA-----PLI 96 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~-----~~~ 96 (359)
+..++++.+++.+..-..++-|| .|... ..+ ......+..+.|.+++.+++++ .+|.+ +|....+. ...
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~ 319 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFE 319 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccccee
Confidence 44556766666654333333344 23221 111 1233568899999999888766 55654 34444443 222
Q ss_pred EEecc--CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeE---eccCCceeEEEcCCc-eEEEEcCCcEEEE
Q 041916 97 KMLCH--QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQ---TLPGHAKTLDFSQKG-LLAVGTGSFVQIL 166 (359)
Q Consensus 97 ~~~~h--~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~---~~~~~i~~~~~s~~g-l~~~~~d~~i~i~ 166 (359)
..... ...+.++.|.+++..+++| ..|.+.... ..++ ... .+..+...+.|.+++ .++.+.+|.|.-|
T Consensus 320 ~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 22211 2348899999887766554 567666553 2232 222 224567899988766 8888888887665
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.29 E-value=0.096 Score=30.82 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCC
Q 041916 103 GPVSALAFHPNG---HLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 103 ~~v~~i~~~~~~---~~l~~~~~d~~i~iwd~~~ 133 (359)
+.|+++.|+|.+ .+|+.+-.-+.|.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 467889999744 4777777778899999985
No 426
>PHA02790 Kelch-like protein; Provisional
Probab=95.24 E-value=0.77 Score=43.56 Aligned_cols=136 Identities=10% Similarity=-0.048 Sum_probs=67.0
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCc--ceEE
Q 041916 29 NHFLLASINKF-----GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG--GTVTMWKPTTAA--PLIK 97 (359)
Q Consensus 29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d--g~v~lwd~~~~~--~~~~ 97 (359)
++.++++||.+ ..+..||..++.... .+....... +++ .-++.+.+.|+.+ ..+..||+.+.+ .+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 45566777754 357788887765322 111111111 222 2356777777754 357888876542 1112
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCC---eEEEEEcCCceeeE--eccCCc--eeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSGKEC---KIKIWDLRKYEVLQ--TLPGHA--KTLDFSQKG-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~--~~~~~i--~~~~~s~~g-l~~~~~d~~i~i~d~~ 169 (359)
+.........++ -+|...+.||.++ .+..||.++..-.. .++.+. .+++ .-+| +++.| |.+.+||..
T Consensus 349 l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G--G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG--RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC--CceEEecCC
Confidence 211111111222 3566777777543 47788887644322 222111 1222 2344 55544 457788865
Q ss_pred CC
Q 041916 170 SG 171 (359)
Q Consensus 170 ~~ 171 (359)
++
T Consensus 424 ~~ 425 (480)
T PHA02790 424 SN 425 (480)
T ss_pred CC
Confidence 54
No 427
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.21 E-value=3.7 Score=40.87 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=49.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCC----------CeE---EEEE--------ecCCCCeEEEEEcCCC---CEEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTM----------GEI---VGNF--------RTGLGRTDVMRVNPFN---GVVS 76 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~----------~~~---~~~~--------~~~~~~v~~~~~sp~~---~~l~ 76 (359)
+..+.++|+|.+||..|..|. .|..+.. |+. .+++ ..+...|..+.|+|.+ ..|+
T Consensus 87 v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 367788999999998887654 4444321 111 1111 1234578899999974 7888
Q ss_pred EEeCCCeEEEEeCCCCc
Q 041916 77 LGHSGGTVTMWKPTTAA 93 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~ 93 (359)
+-..|+++++||+....
T Consensus 166 vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEecCCEEEEEecCCCC
Confidence 99999999999997543
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.21 E-value=0.68 Score=46.27 Aligned_cols=110 Identities=14% Similarity=0.077 Sum_probs=74.3
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCC--------eEEEEEcC----------------CCCEEEEEeCCCeEE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR--------TDVMRVNP----------------FNGVVSLGHSGGTVT 85 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~sp----------------~~~~l~sg~~dg~v~ 85 (359)
+..|+.++.++.|.-.|..+|+.+..+...... +..+++.. .+..++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777888899999999999999887643211 22233321 234788889999999
Q ss_pred EEeCCCCcceEEEeccCCCe-------------EEEEEcC--CCCEEEEEeC----------CCeEEEEEcCCceeeEec
Q 041916 86 MWKPTTAAPLIKMLCHQGPV-------------SALAFHP--NGHLMATSGK----------ECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 86 lwd~~~~~~~~~~~~h~~~v-------------~~i~~~~--~~~~l~~~~~----------d~~i~iwd~~~~~~~~~~ 140 (359)
-.|..+|+.+..+.. .+.| ..+.-.| .+..+++|+. +|.|+-+|+.+|+.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 2221 1122223 2345666642 688999999999988766
No 429
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.14 E-value=1 Score=34.01 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=64.0
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCc--------ceEEEeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcC
Q 041916 66 MRVNPFNGVVSLGHSGGTVTMWKPTTAA--------PLIKMLCHQGPVSALAFHP-----NGHLMATSGKECKIKIWDLR 132 (359)
Q Consensus 66 ~~~sp~~~~l~sg~~dg~v~lwd~~~~~--------~~~~~~~h~~~v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~ 132 (359)
-.|......|++++.-|.|.|.++.... .+..+. -...|++|+-.| +...|+.|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 3455555678888899999999876432 233332 345677776554 2345666664 679999998
Q ss_pred CceeeE--eccCCceeEEEcC-----CceEEEEcCCcEEEEc
Q 041916 133 KYEVLQ--TLPGHAKTLDFSQ-----KGLLAVGTGSFVQILG 167 (359)
Q Consensus 133 ~~~~~~--~~~~~i~~~~~s~-----~gl~~~~~d~~i~i~d 167 (359)
...-+. .++..+.++.+-. ..++.+|.+..|.-||
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd 123 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFD 123 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeC
Confidence 765433 3366677776632 2266666666777777
No 430
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=1.5 Score=35.83 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=66.6
Q ss_pred EEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 22 LKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
..+.+. +|.++.+.+. ...|++||+.+|+.+.+-.-....+..=-...-+ ...+..-.+|.-..+|.++.+.+..+
T Consensus 49 QGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 49 QGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred cceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence 455555 3466666654 4579999999998876654331111110001112 23334557888899999888877665
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee
Q 041916 99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV 136 (359)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 136 (359)
. ..+.=+.++- |+..|..+....++..-|..+...
T Consensus 128 ~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 128 S-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred c-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhh
Confidence 4 3444455553 555576666667788778766443
No 431
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.02 E-value=0.11 Score=30.64 Aligned_cols=32 Identities=13% Similarity=0.273 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCCC
Q 041916 61 GRTDVMRVNPFN---GVVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 61 ~~v~~~~~sp~~---~~l~sg~~dg~v~lwd~~~~ 92 (359)
+.|.++.|||.+ .+|+.+-.-|.|.|+|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468999999854 48888888899999999853
No 432
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.90 E-value=1.9 Score=36.84 Aligned_cols=97 Identities=18% Similarity=0.121 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-Ee
Q 041916 61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-QT 139 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~ 139 (359)
+....++-.|||...+++...|.|--.|..+++....-.+.-..-..|...|||...++-+.. .|.-.|-.+.... ..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 345678889999999999999999999999997655443434445678889999877765544 5666676554321 12
Q ss_pred c-----cCCceeEEEcCCc--eEEEE
Q 041916 140 L-----PGHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 140 ~-----~~~i~~~~~s~~g--l~~~~ 158 (359)
+ .+......|.+.| .+++.
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q 166 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQ 166 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeec
Confidence 2 3456888999999 44443
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.73 E-value=0.55 Score=43.16 Aligned_cols=89 Identities=13% Similarity=0.148 Sum_probs=61.4
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCe-EEEEEc-CCC---------------C
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT-DVMRVN-PFN---------------G 73 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-~~~~~s-p~~---------------~ 73 (359)
...|...... .+++.+|++.+.|+...-|.|.++|+.++..++.+++..+.= .-+... +.. .
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3455555555 899999999999988888999999999998888887654321 111110 100 1
Q ss_pred --EEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 74 --VVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 74 --~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
+++-+-.-|.|.||+++++..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 233456788999999998877766553
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.59 E-value=2.3 Score=35.46 Aligned_cols=129 Identities=17% Similarity=0.203 Sum_probs=74.8
Q ss_pred CCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEE-EeCCCeEEEEE
Q 041916 61 GRTDVMRVNPFNGVVSLGHS---------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMAT-SGKECKIKIWD 130 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~-~~~d~~i~iwd 130 (359)
...+.-..+|+|++++-.-. .|.++.|-+. + .+..+...-+--+.++|+.+.+.++. -+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-H-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC-C-CceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 34556667899988443222 2445555432 1 12222222333467999988777654 45667887787
Q ss_pred --cCCce-----eeEecc------C-CceeEEEcCCc-e-EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE
Q 041916 131 --LRKYE-----VLQTLP------G-HAKTLDFSQKG-L-LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF 194 (359)
Q Consensus 131 --~~~~~-----~~~~~~------~-~i~~~~~s~~g-l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~ 194 (359)
..+|. .+..+. . ....+++..+| + +++-..++|.-.|+.++ +.+..+.-... .|++++|
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG-K~L~eiklPt~----qitsccF 261 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG-KILLEIKLPTP----QITSCCF 261 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC-cEEEEEEcCCC----ceEEEEe
Confidence 55543 233331 1 13556666677 4 44556789999998887 44444433332 7999999
Q ss_pred ee
Q 041916 195 RP 196 (359)
Q Consensus 195 ~p 196 (359)
--
T Consensus 262 gG 263 (310)
T KOG4499|consen 262 GG 263 (310)
T ss_pred cC
Confidence 64
No 435
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.53 E-value=3.5 Score=37.32 Aligned_cols=198 Identities=9% Similarity=-0.010 Sum_probs=97.5
Q ss_pred eEEEeCCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN--PFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~s 77 (359)
+++.|....++..|..+.+. ....++|+.+.++-......|.-.|+.+.+....+......+....|. .++..++-
T Consensus 62 ly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 62 LYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp EEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEE
T ss_pred eEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEE
Confidence 35566444455556654432 567778888887666566789999999988766666666666556664 45555443
Q ss_pred Ee---C-------------------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeC---CC-eEEEEE
Q 041916 78 GH---S-------------------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGK---EC-KIKIWD 130 (359)
Q Consensus 78 g~---~-------------------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~---d~-~i~iwd 130 (359)
.- . ...|.-.|+.+|+....+. -...+.-+.|+| |..+|+.|-. +. .-+||-
T Consensus 142 ~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~ 220 (386)
T PF14583_consen 142 IEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWT 220 (386)
T ss_dssp EEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEE
T ss_pred EEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEE
Confidence 21 1 1345666788776544443 345677899999 5555666643 22 135565
Q ss_pred cCC-ceeeEec----cC-CceeEEEcCCc--eEE-EE-c---CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 131 LRK-YEVLQTL----PG-HAKTLDFSQKG--LLA-VG-T---GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 131 ~~~-~~~~~~~----~~-~i~~~~~s~~g--l~~-~~-~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
+++ +.....+ ++ .+..=-|+|+| +.- .. . +..|.-+|+.++... ...... ....+--+++
T Consensus 221 i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~-~~~~~p------~~~H~~ss~D 293 (386)
T PF14583_consen 221 INTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR-RLMEMP------WCSHFMSSPD 293 (386)
T ss_dssp EETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE-EEEEE-------SEEEEEE-TT
T ss_pred EEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce-EEEeCC------ceeeeEEcCC
Confidence 543 2222222 11 34556699999 222 22 2 335777777766322 111111 3445556788
Q ss_pred CCEEEEEcCC
Q 041916 198 EDVLGIGHSM 207 (359)
Q Consensus 198 ~~~l~~~~~d 207 (359)
|++++--+.|
T Consensus 294 g~L~vGDG~d 303 (386)
T PF14583_consen 294 GKLFVGDGGD 303 (386)
T ss_dssp SSEEEEEE--
T ss_pred CCEEEecCCC
Confidence 8877654444
No 436
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.51 E-value=1.4 Score=39.65 Aligned_cols=101 Identities=19% Similarity=0.253 Sum_probs=55.7
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEEEe----cCCCCeEEEEEcCC----CCEEEEEeCC-------
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGNFR----TGLGRTDVMRVNPF----NGVVSLGHSG------- 81 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~~~~sp~----~~~l~sg~~d------- 81 (359)
.+++|+|.|||.+|++ ...|.|++++ ..+.. +..+. ........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3589999999987775 5699999999 44543 22221 23456789999995 3333333311
Q ss_pred -CeEEEEeCCCC-------cceE-EEec---cCCCeEEEEEcCCCCEEEEEeC
Q 041916 82 -GTVTMWKPTTA-------APLI-KMLC---HQGPVSALAFHPNGHLMATSGK 122 (359)
Q Consensus 82 -g~v~lwd~~~~-------~~~~-~~~~---h~~~v~~i~~~~~~~~l~~~~~ 122 (359)
..|.-|..... +.+. .+.. ....-..|+|.|||.+.++.+.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444332 1111 1122 2234567999999976666554
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.50 E-value=2.3 Score=35.05 Aligned_cols=111 Identities=14% Similarity=0.168 Sum_probs=65.6
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEE---e
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMW---K 88 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lw---d 88 (359)
.+..++-++.+.+|++ .....|.+|++.+ ...+..|..- +.|..+.++..|.+|++-=.+ ..+++| .
T Consensus 19 EP~~~c~~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr 96 (215)
T PF14761_consen 19 EPTAVCCGGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWR 96 (215)
T ss_pred CcceeeccCCceEEEE-cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhh
Confidence 4444444443344443 4567899999983 3456667654 789999999999999985322 255665 2
Q ss_pred CC--CCcceE-EEecc---------------------CCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc
Q 041916 89 PT--TAAPLI-KMLCH---------------------QGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 89 ~~--~~~~~~-~~~~h---------------------~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
.. ...++. .+-+| +.++.+++..| .|++ +.|+ ++++.+|.+...
T Consensus 97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEE
Confidence 11 112222 11122 33567788877 4554 4444 357888877653
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=4.4 Score=39.57 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=84.5
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE--E--eccCCCeEEEEEcCCCC
Q 041916 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK--M--LCHQGPVSALAFHPNGH 115 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~--~--~~h~~~v~~i~~~~~~~ 115 (359)
-.|+||++. |..+..+.-..+.+-.+.|+.+.. |++-..||++++|++-. ..+.. + ......|....|..+|-
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCce-EEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence 468899974 777777665556888999998765 55567999999999752 22222 1 12222344444444554
Q ss_pred EEEEEeCCCeEEEEEcCCceeeEeccC------CceeEEEcCCc-----eEEEEcCCcEEEEcCCCCCCccceeecccCC
Q 041916 116 LMATSGKECKIKIWDLRKYEVLQTLPG------HAKTLDFSQKG-----LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV 184 (359)
Q Consensus 116 ~l~~~~~d~~i~iwd~~~~~~~~~~~~------~i~~~~~s~~g-----l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 184 (359)
.+++. +|.+.+-+-........++. +.+|....+++ ++.....--..++....+......+..
T Consensus 141 avlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~---- 214 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW---- 214 (829)
T ss_pred EEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC----
Confidence 44443 34454433222212223311 11333333332 222211101111211111111111111
Q ss_pred CCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 185 KGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 185 ~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
+.+.+..+..||+.++|+.-+..|.+.+
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~ 242 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWV 242 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEE
Confidence 1136888999999999999888885544
No 439
>PHA02790 Kelch-like protein; Provisional
Probab=94.09 E-value=3.8 Score=38.90 Aligned_cols=101 Identities=10% Similarity=-0.068 Sum_probs=49.5
Q ss_pred cCCCEEEEEecC--CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCcce--EEE
Q 041916 28 RNHFLLASINKF--GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSGG---TVTMWKPTTAAPL--IKM 98 (359)
Q Consensus 28 ~~~~~l~s~~~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~dg---~v~lwd~~~~~~~--~~~ 98 (359)
-++.+.+.||.+ .++..||..++.-.. .+....... +++ .-+|.+.+.|+.++ .+..||+.+..-. ..+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m 394 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST 394 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence 366677777753 457888876553221 111111111 122 23567777777653 4778888754311 111
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 041916 99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE 135 (359)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 135 (359)
.........++ -+|...+.| |.+.+||..+.+
T Consensus 395 ~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~ 426 (480)
T PHA02790 395 YYPHYKSCALV--FGRRLFLVG---RNAEFYCESSNT 426 (480)
T ss_pred CCccccceEEE--ECCEEEEEC---CceEEecCCCCc
Confidence 11111111222 245445555 356788887643
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.96 E-value=0.46 Score=39.80 Aligned_cols=59 Identities=10% Similarity=0.167 Sum_probs=40.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------c----------CCceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------P----------GHAKTLDFSQKG-LLAVGTGSFVQILGD 168 (359)
Q Consensus 110 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~----------~~i~~~~~s~~g-l~~~~~d~~i~i~d~ 168 (359)
+..+++++++.+.+|.+++||+.+++.+..- . ..|..+.++.+| .++.-.+|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecc
Confidence 4457889999999999999999987754322 1 235667777777 222333566777773
No 441
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.89 E-value=0.0052 Score=55.74 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=88.1
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV-VSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
....|-|.+.-++.++.+..|..||-. |+...... ..+....|+|.-++.. ++.+...+.+.+||+++......-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 566788877668888888899999954 55444433 3455677888887754 44566788999999986432111111
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG 153 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g 153 (359)
....-.-+.|++.+..++.+...+.+.+|+.++.+.+... ...+++++|.+.+
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc
Confidence 1222223789998888999988999999998876544333 2356788887776
No 442
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.88 E-value=1 Score=41.49 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=38.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCC
Q 041916 59 GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGP 104 (359)
Q Consensus 59 ~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~ 104 (359)
..-.+.+++.+|++.+.|+...=|.|.|+|+.++..++.+++..+.
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 3345788999999999998888899999999999888888776653
No 443
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.70 E-value=0.69 Score=38.73 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.1
Q ss_pred EecCCCEEEEEecCCeEEEEECCCCeEEE
Q 041916 26 FLRNHFLLASINKFGQLRYQDVTMGEIVG 54 (359)
Q Consensus 26 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 54 (359)
+..++.+|++.+.+|.+++||+.+++.+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 45578889999999999999999887643
No 444
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.67 E-value=5.7 Score=36.58 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=77.4
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----ee
Q 041916 63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-----VL 137 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-----~~ 137 (359)
...+..++++.+++.|.....++-||.....-...-......++++.|.+++..++++ .+|.+.. ....+. ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 3445667887777766554433445432110011111234568899999999887665 4565443 222232 12
Q ss_pred Eecc-----CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 138 QTLP-----GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 138 ~~~~-----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.... ..+.++.|.+++ +++++..|.+.... ..+ +.......-.. -...++.+.|.++++.+++|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G-~tW~~~~~~~~-~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG-KSWKRDKGADN-IAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC-cceeEccccCC-CCcceeEEEEcCCCceEEEeC
Confidence 2221 247889999888 88899889877764 233 33332221111 123688999988776655543
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.57 E-value=0.45 Score=38.24 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=22.3
Q ss_pred CCceeEEEcCCc--------eEEEEcCCcEEEEcCC
Q 041916 142 GHAKTLDFSQKG--------LLAVGTGSFVQILGDF 169 (359)
Q Consensus 142 ~~i~~~~~s~~g--------l~~~~~d~~i~i~d~~ 169 (359)
..+..++|||.| |++.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999976 5556788999999743
No 446
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.57 E-value=4.7 Score=35.32 Aligned_cols=159 Identities=10% Similarity=0.084 Sum_probs=85.7
Q ss_pred CeEEEEECCCCeEEEEEecC------CCCeEEEEEcCCC-----CEE-EEEeCCCeEEEEeCCCCcceEEEec-------
Q 041916 40 GQLRYQDVTMGEIVGNFRTG------LGRTDVMRVNPFN-----GVV-SLGHSGGTVTMWKPTTAAPLIKMLC------- 100 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~-----~~l-~sg~~dg~v~lwd~~~~~~~~~~~~------- 100 (359)
-.|.+||+.+++.++.+.-+ .+.++.+.+.... .++ ++=+..+-|.|+|+.+++.-+.+..
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 37899999999988887632 3456777776522 233 3333446799999988754333221
Q ss_pred ------------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCC-----ce---------eeEec---cCCceeEE
Q 041916 101 ------------HQGPVSALAFHP---NGHLMATSGKECKIKIWDLRK-----YE---------VLQTL---PGHAKTLD 148 (359)
Q Consensus 101 ------------h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~-----~~---------~~~~~---~~~i~~~~ 148 (359)
..+.+..++.+| +|++|+.+...+ -.+|-+.+ .. .+..+ .+....++
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 123366777766 667777766543 23333321 10 11222 23567888
Q ss_pred EcCCc-eE-EEEcCCcEEEEcCCCCCC--ccceeecccCCCCcceEEEEEee--CCCE
Q 041916 149 FSQKG-LL-AVGTGSFVQILGDFSGSH--NYSRYMGHSMVKGYQIGKVSFRP--YEDV 200 (359)
Q Consensus 149 ~s~~g-l~-~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p--~~~~ 200 (359)
++++| ++ +--..+.|..|+...... ....+... ...-..+.++.+.+ +|.+
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d-~~~l~~pd~~~i~~~~~g~L 249 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQD-PRTLQWPDGLKIDPEGDGYL 249 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE--CC-GSSEEEEEE-T--TS-E
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEc-CceeeccceeeeccccCceE
Confidence 99999 44 444678999999654211 11222211 10123677888888 6643
No 447
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.54 E-value=0.073 Score=52.13 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=54.5
Q ss_pred CCeEEEEECC--CCeEEEEEe-----cCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEE
Q 041916 39 FGQLRYQDVT--MGEIVGNFR-----TGLGRTDVMRVNP---FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSAL 108 (359)
Q Consensus 39 dg~i~iwd~~--~~~~~~~~~-----~~~~~v~~~~~sp---~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i 108 (359)
-|.+.|||++ .|+....+. .....+.-+.|.| +..++..+-.+|.|.+...+.... ..+.+|...+..+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 3678899986 344332222 2223445555655 456777788889988877654322 2234566555544
Q ss_pred E-----------EcCCCCEEEEEeCCCeEEEEEc
Q 041916 109 A-----------FHPNGHLMATSGKECKIKIWDL 131 (359)
Q Consensus 109 ~-----------~~~~~~~l~~~~~d~~i~iwd~ 131 (359)
+ .+|||..+++++.||.++.|.+
T Consensus 231 a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 231 AFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred HHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 4 4667777777777776666654
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.44 E-value=5.5 Score=35.66 Aligned_cols=145 Identities=16% Similarity=0.193 Sum_probs=83.4
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCe------EEEEeCCC--C--cceE-----EEeccCC--------CeEEEEEcCCCCE
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSGGT------VTMWKPTT--A--APLI-----KMLCHQG--------PVSALAFHPNGHL 116 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~dg~------v~lwd~~~--~--~~~~-----~~~~h~~--------~v~~i~~~~~~~~ 116 (359)
-+.+..+.+.|++..+++.+++|. +..+++.. + ..+. .+....+ ..-+|++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356778888876666666777777 66555443 1 1111 1111111 3347888788888
Q ss_pred EEEEeCC------CeEEEEEcCCceeeEec------------------cCCceeEEEcCCc--eEEEEc-----CC--c-
Q 041916 117 MATSGKE------CKIKIWDLRKYEVLQTL------------------PGHAKTLDFSQKG--LLAVGT-----GS--F- 162 (359)
Q Consensus 117 l~~~~~d------~~i~iwd~~~~~~~~~~------------------~~~i~~~~~s~~g--l~~~~~-----d~--~- 162 (359)
+++.-.+ ..|..+|.. |.....+ ....-+|+++|+| ++++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 789888876 5443332 1235789999998 555432 22 1
Q ss_pred ------EEE--EcCCCCCCcccee--ecccC---CCCcceEEEEEeeCCCEEEEEc
Q 041916 163 ------VQI--LGDFSGSHNYSRY--MGHSM---VKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 163 ------i~i--~d~~~~~~~~~~~--~~~~~---~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
+++ ||..+.......+ ..... .....|..+.+.+++++|+.--
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 444 4544322222222 11100 0234789999999999777643
No 449
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.36 E-value=1.7 Score=40.33 Aligned_cols=123 Identities=10% Similarity=0.058 Sum_probs=75.1
Q ss_pred CCCcEEEEeccCCCeEEEEEecCC--------CEEEEEecCCeEEEEECCC-CeEEEEEecCCCCeEEEEEc----CCCC
Q 041916 7 RDGTELHCLKEHGAVLKLQFLRNH--------FLLASINKFGQLRYQDVTM-GEIVGNFRTGLGRTDVMRVN----PFNG 73 (359)
Q Consensus 7 ~~g~~~~~l~~h~~~~~l~~s~~~--------~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s----p~~~ 73 (359)
..|+.+-....|..+ -+.|.|+. +.|+ |-.+..|.-.|.+- |..+.... ....++--.|| ..+.
T Consensus 498 ErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesG 574 (776)
T COG5167 498 ERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESG 574 (776)
T ss_pred ccceeeeEeecCCcc-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeeee-ehhccccccccccccccCc
Confidence 556677777777776 66777753 2343 44455666666653 33222222 11122222222 2346
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
++|+||..|-|++||--.-..-..+.+....|-.|..+.+|.++++.|. ..+-+-|++-
T Consensus 575 yIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred eEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 8999999999999994322223334455667889999999999777665 5788888753
No 450
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.35 E-value=9.5 Score=38.86 Aligned_cols=167 Identities=15% Similarity=0.183 Sum_probs=90.9
Q ss_pred eEEEEECCCCeEEEEEecCCC----CeEEEEEcCCCC--EEEEEe-----------CCCeEEEEeCC-CCcceEEEe--c
Q 041916 41 QLRYQDVTMGEIVGNFRTGLG----RTDVMRVNPFNG--VVSLGH-----------SGGTVTMWKPT-TAAPLIKML--C 100 (359)
Q Consensus 41 ~i~iwd~~~~~~~~~~~~~~~----~v~~~~~sp~~~--~l~sg~-----------~dg~v~lwd~~-~~~~~~~~~--~ 100 (359)
.|+++|..+++.+..+.-..+ .+..+.|+.... ++++|. .+|.++.|++- .+..+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 588899888876665553222 355666665433 344432 24556666643 333222221 1
Q ss_pred cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCcc
Q 041916 101 HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNY 175 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~ 175 (359)
-.++|. +..|-..++++| ....+++||+...++++.. +..|+.+++.-..++++...-.+.++-.......+
T Consensus 934 ~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred CCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeE
Confidence 234443 445755555554 4468999999887665544 45677887777666666654444444333433455
Q ss_pred ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 176 SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 176 ~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
..+...+. +. .|+++.+- |...++.|..-|.+.++
T Consensus 1011 ~~fadD~~-pR-~Vt~~~~l-D~~tvagaDrfGNi~~v 1045 (1205)
T KOG1898|consen 1011 IVFADDPV-PR-HVTALELL-DYDTVAGADRFGNIAVV 1045 (1205)
T ss_pred EEEeCCCc-cc-eeeEEEEe-cCCceeeccccCcEEEE
Confidence 55554432 11 35555544 44556666555544443
No 451
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.12 E-value=9.3 Score=37.72 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=82.6
Q ss_pred CCEEEEEecCCeEEEEECCCCeEE------EEEec----------------CCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIV------GNFRT----------------GLGRTDVMRVNP--FNGVVSLGHSGGTVT 85 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~------~~~~~----------------~~~~v~~~~~sp--~~~~l~sg~~dg~v~ 85 (359)
.++|+++. .+.|.||+++.-..+ ..+.. ....|+.|...- ....|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56666654 679999998642211 11100 011244444332 235788999999999
Q ss_pred EEeCCC-------C-------------cceEEEeccCCCeEEEEEc--CCCCEEEEEeCCCeEEEEEcCCc--ee--e--
Q 041916 86 MWKPTT-------A-------------APLIKMLCHQGPVSALAFH--PNGHLMATSGKECKIKIWDLRKY--EV--L-- 137 (359)
Q Consensus 86 lwd~~~-------~-------------~~~~~~~~h~~~v~~i~~~--~~~~~l~~~~~d~~i~iwd~~~~--~~--~-- 137 (359)
+|.+.+ . +|...+. -...+++++++ ...++||+++....|.||-.... +. .
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s 206 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPS 206 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccc
Confidence 996421 0 1222222 23468999998 78888999888888888755432 11 1
Q ss_pred EeccCCceeEEEcCC-----c---eEEEEcCCcEEEEcC
Q 041916 138 QTLPGHAKTLDFSQK-----G---LLAVGTGSFVQILGD 168 (359)
Q Consensus 138 ~~~~~~i~~~~~s~~-----g---l~~~~~d~~i~i~d~ 168 (359)
......|.+|+|-++ | +++++-.|.+.+|++
T Consensus 207 ~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 207 HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 112456889998664 3 345566788888775
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.11 E-value=2 Score=40.08 Aligned_cols=24 Identities=13% Similarity=-0.004 Sum_probs=14.5
Q ss_pred EEEEecCCCEEEEEecCCeEEEEE
Q 041916 23 KLQFLRNHFLLASINKFGQLRYQD 46 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~~dg~i~iwd 46 (359)
.+..++.|..++-+|.+|.+.++=
T Consensus 108 ~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 108 QVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEecCCCceEEEecCCeeEEEEc
Confidence 344566677777777676554443
No 453
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.05 E-value=11 Score=38.11 Aligned_cols=152 Identities=11% Similarity=0.052 Sum_probs=83.6
Q ss_pred EeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCC------CEEEEEeCCCeEE
Q 041916 14 CLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFN------GVVSLGHSGGTVT 85 (359)
Q Consensus 14 ~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~------~~l~sg~~dg~v~ 85 (359)
......+.+....+.+...++.++.++.+.+.++..+. +.... .-...|.|+.++|-| .+++.|..+..+.
T Consensus 483 ~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~ 561 (1096)
T KOG1897|consen 483 EWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM 561 (1096)
T ss_pred cccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence 33344444444444455566777777888888887665 22222 224578999999853 2788888776655
Q ss_pred EEeC-CCCcceEEE-ec---cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC--Cceee--E--ec-cCCceeEEEcCCc
Q 041916 86 MWKP-TTAAPLIKM-LC---HQGPVSALAFHPNGHLMATSGKECKIKIWDLR--KYEVL--Q--TL-PGHAKTLDFSQKG 153 (359)
Q Consensus 86 lwd~-~~~~~~~~~-~~---h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~--~~~~~--~--~~-~~~i~~~~~s~~g 153 (359)
+.-. .+...+... .. -+..|.-..|-.|..+|+++..||.+..|-+. ++..- + .+ ..|+.--.|+..+
T Consensus 562 ~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~ 641 (1096)
T KOG1897|consen 562 ILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKS 641 (1096)
T ss_pred EEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCC
Confidence 4432 222222111 11 12234445555678999999999998877554 43321 1 22 3355555555544
Q ss_pred --eEEEEcCCcEEEE
Q 041916 154 --LLAVGTGSFVQIL 166 (359)
Q Consensus 154 --l~~~~~d~~i~i~ 166 (359)
.+.+.+|.-..+|
T Consensus 642 ~t~vfa~sdrP~viY 656 (1096)
T KOG1897|consen 642 RTAVFALSDRPTVIY 656 (1096)
T ss_pred ceEEEEeCCCCEEEE
Confidence 3333344433444
No 454
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.03 E-value=5.3 Score=37.92 Aligned_cols=137 Identities=14% Similarity=0.104 Sum_probs=69.0
Q ss_pred CCEEEEE---ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCC--
Q 041916 30 HFLLASI---NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGP-- 104 (359)
Q Consensus 30 ~~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~-- 104 (359)
+-++++. ...+...++|.. |.....+.........+...++|.+++..+ ..+..+|+. |+.+..+....+.
T Consensus 115 gl~~~~~~~~~~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~ 190 (477)
T PF05935_consen 115 GLYFVNGNDWDSSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYD 190 (477)
T ss_dssp -EEEEEETT--BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred cEEEEeCCCCCCCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccc
Confidence 3455555 345677888864 777666654333222266778888877555 678888875 5555544322211
Q ss_pred -eEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCceeeEec----------c-------------------
Q 041916 105 -VSALAFHPNGHLMATSGK-------------ECKIKIWDLRKYEVLQTL----------P------------------- 141 (359)
Q Consensus 105 -v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~~~~~~----------~------------------- 141 (359)
=.++...|+|++|+.+.. .-.|..+| .+|+.+..+ .
T Consensus 191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 245777899999887771 11344455 555444332 0
Q ss_pred -CCceeEEEcC-Cc-eEEEEcC-CcEEEEcCCCC
Q 041916 142 -GHAKTLDFSQ-KG-LLAVGTG-SFVQILGDFSG 171 (359)
Q Consensus 142 -~~i~~~~~s~-~g-l~~~~~d-~~i~i~d~~~~ 171 (359)
-+++++.+.+ ++ +++.+.. +.|...|..++
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 1568899988 44 6666543 57777774443
No 455
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.96 E-value=0.79 Score=36.80 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 041916 103 GPVSALAFHPNG------HLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 103 ~~v~~i~~~~~~------~~l~~~~~d~~i~iwd~~~ 133 (359)
..|.+++|||.| -+|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999933 3588889999999998653
No 456
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.90 E-value=1.7 Score=42.63 Aligned_cols=102 Identities=9% Similarity=0.062 Sum_probs=69.9
Q ss_pred CCCEEEEEecCCeEEEEECCC-------C-------------eEEEEEecCCCCeEEEEEc--CCCCEEEEEeCCCeEEE
Q 041916 29 NHFLLASINKFGQLRYQDVTM-------G-------------EIVGNFRTGLGRTDVMRVN--PFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~v~~~~~s--p~~~~l~sg~~dg~v~l 86 (359)
+...|+.|..||.|.+|.+.+ . ++...+. -...+++++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 346788999999999997631 0 0111222 23478899998 77789999999999998
Q ss_pred EeCCCC--c-ceEEEeccCCCeEEEEEcCC-----CC-EEEEEeCCCeEEEEEc
Q 041916 87 WKPTTA--A-PLIKMLCHQGPVSALAFHPN-----GH-LMATSGKECKIKIWDL 131 (359)
Q Consensus 87 wd~~~~--~-~~~~~~~h~~~v~~i~~~~~-----~~-~l~~~~~d~~i~iwd~ 131 (359)
|-.... + ....-..|...|.+|+|-++ |. ++++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 865431 1 11111135567889999763 32 6788889999999888
No 457
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.82 E-value=8.4 Score=36.08 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=40.4
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEEe-----ccCCCeEEEEEcCCC
Q 041916 55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP--LIKML-----CHQGPVSALAFHPNG 114 (359)
Q Consensus 55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~--~~~~~-----~h~~~v~~i~~~~~~ 114 (359)
.+.......+.|+|.|+|.+|++--..|.|++++..++.. +..+. ...+....|+++|+-
T Consensus 24 ~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 3444456678999999998777655469999998655432 11111 135667899999874
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=92.37 E-value=9.7 Score=35.68 Aligned_cols=110 Identities=16% Similarity=0.199 Sum_probs=63.1
Q ss_pred EEEecc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEE----e-cCCCCeEEEEEcCCC------CEEEE
Q 041916 12 LHCLKE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNF----R-TGLGRTDVMRVNPFN------GVVSL 77 (359)
Q Consensus 12 ~~~l~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~----~-~~~~~v~~~~~sp~~------~~l~s 77 (359)
+..+.. -..++.|+|.||+.+|++--..|.|++++..++.. +..+ . ...+....|+++|+- .+|+.
T Consensus 22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYv 101 (454)
T TIGR03606 22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYI 101 (454)
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEE
Confidence 333443 34459999999998887765469999998665432 2111 1 135678899999874 23333
Q ss_pred Ee----------CCCeEEEEeCCCC--c---ceEEEe------ccCCCeEEEEEcCCCCEEEEEeCC
Q 041916 78 GH----------SGGTVTMWKPTTA--A---PLIKML------CHQGPVSALAFHPNGHLMATSGKE 123 (359)
Q Consensus 78 g~----------~dg~v~lwd~~~~--~---~~~~~~------~h~~~v~~i~~~~~~~~l~~~~~d 123 (359)
.. ....|.-|.+... . ....+. .|.+ ..|+|.|||.++++.+..
T Consensus 102 syt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~G--grI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 102 SYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNG--GRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCC--ceEEECCCCcEEEEECCC
Confidence 32 1233544554321 1 111121 2333 468899999876655543
No 459
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.36 E-value=6.1 Score=36.06 Aligned_cols=109 Identities=6% Similarity=-0.042 Sum_probs=68.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEEecCC--CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCC-Ce
Q 041916 29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGL--GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG-PV 105 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~-~v 105 (359)
++. ++.+..+|.|.-.|..++..+.....-. ..+.+-.+..+|. |+.++.+|.+..+|..+++.+........ .+
T Consensus 68 dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 444 4445778899999999888765443321 2223323333554 77788999999999988988887765441 11
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
....+-.++ .++.++.++.+...|..++.....+
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence 111111233 3444447788999998888876664
No 460
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.28 E-value=4.4 Score=34.44 Aligned_cols=136 Identities=19% Similarity=0.228 Sum_probs=75.2
Q ss_pred EEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEec---CCeEEEEECCC--CeEEE-EEe---cCCCCeEEEEEcC
Q 041916 3 YIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINK---FGQLRYQDVTM--GEIVG-NFR---TGLGRTDVMRVNP 70 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~---dg~i~iwd~~~--~~~~~-~~~---~~~~~v~~~~~sp 70 (359)
.+|| .+++ +.-+.-..+. .+-+|.|||.+|.+|+. ...+++++..+ +.+-. ... ...-.-.+..--|
T Consensus 49 ~~yD~~tn~-~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNT-FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCc-EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 3677 4443 3344444444 45578899999999875 24578888654 11110 000 1112233444567
Q ss_pred CCCEEEEEeCCC-eEEEEeCCCC-cceEEE--ec------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 71 FNGVVSLGHSGG-TVTMWKPTTA-APLIKM--LC------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 71 ~~~~l~sg~~dg-~v~lwd~~~~-~~~~~~--~~------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
||+.|+.|+.+. +..+|..... .....+ .. ...---.+...|+|++++.+..+ -.+||..+.+.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeC
Confidence 899988888764 3455543221 111111 11 01112246667999999888765 455688887777776
Q ss_pred c
Q 041916 141 P 141 (359)
Q Consensus 141 ~ 141 (359)
+
T Consensus 206 P 206 (243)
T PF07250_consen 206 P 206 (243)
T ss_pred C
Confidence 3
No 461
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=91.99 E-value=15 Score=37.17 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=70.9
Q ss_pred CCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCC----cc-eEEEeccCCC----------eEEEEEcCCCCEEEEEeCCC
Q 041916 61 GRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTA----AP-LIKMLCHQGP----------VSALAFHPNGHLMATSGKEC 124 (359)
Q Consensus 61 ~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~----~~-~~~~~~h~~~----------v~~i~~~~~~~~l~~~~~d~ 124 (359)
.+...++|+|.. ..||.....|...||++... .. ......+.+. -..|.|.++.+.|++++. .
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~ 224 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S 224 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence 467889999954 68999999999999999211 11 1111112222 347889888888888876 5
Q ss_pred eEEEEEcCCceeeEec-----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCC
Q 041916 125 KIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 125 ~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~ 170 (359)
.+.++|+.+......+ ...|..+.-+|.. ++.. ....|...+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 7899999986543312 2467888888873 3333 345666666554
No 462
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.97 E-value=0.017 Score=52.51 Aligned_cols=118 Identities=16% Similarity=0.230 Sum_probs=76.1
Q ss_pred EEeCCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEeCC
Q 041916 4 IYNRDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLGHSG 81 (359)
Q Consensus 4 iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg~~d 81 (359)
.||..|+....+........++|.-++..+ +.+-..+.+.+||+.+... .++. +....-.-+.|++.+..++.|...
T Consensus 60 ~YD~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~ 138 (615)
T KOG2247|consen 60 YYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNA 138 (615)
T ss_pred hhhhhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccc
Confidence 344444444333333334677887776544 4455678999999976432 1221 111122237899988889999999
Q ss_pred CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 041916 82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE 123 (359)
Q Consensus 82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d 123 (359)
|.+.+++..+...+..+-.|...+++++|.+.+.. +.++.|
T Consensus 139 gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd 179 (615)
T KOG2247|consen 139 GNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCD 179 (615)
T ss_pred cceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcH
Confidence 99999998877666555458889999999987643 334333
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.74 E-value=1.4 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=28.0
Q ss_pred cCCCEEEEEe-cCCeEEEEECCCCeEEEEEecCCCCeEEEEE
Q 041916 28 RNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV 68 (359)
Q Consensus 28 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 68 (359)
|+++.|+++. .+++|.++|..++..+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 5676665544 5789999999999888888764 33345544
No 464
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.73 E-value=0.53 Score=45.55 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=51.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee--eEeccCCceeEEEcCCceEEEEcCCcEEEEc
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEV--LQTLPGHAKTLDFSQKGLLAVGTGSFVQILG 167 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d 167 (359)
.+++|.-+|.|..+++++.||+|++|+.-.... +.+...+...+.|...|++++.+|..+.-|.
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEeccchhheee
Confidence 467788889999999999999999999865443 3333556778889999999988888888886
No 465
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=91.67 E-value=0.82 Score=44.23 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=44.3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCC----CcceEEE--ec--------------------cCCCeEEEEEcC----CCCEEEE
Q 041916 70 PFNGVVSLGHSGGTVTMWKPTT----AAPLIKM--LC--------------------HQGPVSALAFHP----NGHLMAT 119 (359)
Q Consensus 70 p~~~~l~sg~~dg~v~lwd~~~----~~~~~~~--~~--------------------h~~~v~~i~~~~----~~~~l~~ 119 (359)
++...++.+..||.+....... +...... .. ..+.+.++++++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3567788888999888877653 1111110 00 123456666766 7789999
Q ss_pred EeCCCeEEEEEcCCceeeEec
Q 041916 120 SGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 120 ~~~d~~i~iwd~~~~~~~~~~ 140 (359)
.+.|+++++||+.++.++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985543
No 466
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=11 Score=34.76 Aligned_cols=144 Identities=10% Similarity=0.062 Sum_probs=82.1
Q ss_pred CCCcEEEEeccCCC-------eEEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 7 RDGTELHCLKEHGA-------VLKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 7 ~~g~~~~~l~~h~~-------~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
.+|..-+.+..|.. .+.+-|....+.|+ +-..|.+.=|-+.... ++..-....++|.++.||+|++.||
T Consensus 4 gsGalyhelihhPslfcnipesngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilA 82 (657)
T KOG2377|consen 4 GSGALYHELIHHPSLFCNIPESNGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILA 82 (657)
T ss_pred CCcceEEEEecCchhhccCCcccceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEE
Confidence 34566666666653 14555544333332 3334555556554322 2222224567999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC----ceeeEeccCCceeEE
Q 041916 77 LGHSGGTVTMWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK----YEVLQTLPGHAKTLD 148 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~----~~~~~~~~~~i~~~~ 148 (359)
+--.+.+|.+++....++.. +-+.....|....|+.+ .-+|..+..| +-+|-+.. -+.+.+....|.=..
T Consensus 83 VQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~ 160 (657)
T KOG2377|consen 83 VQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYM 160 (657)
T ss_pred EEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEE
Confidence 99999999999874322221 12233445888899765 4455555444 55554432 222333344455555
Q ss_pred EcCCc
Q 041916 149 FSQKG 153 (359)
Q Consensus 149 ~s~~g 153 (359)
|.++.
T Consensus 161 yc~et 165 (657)
T KOG2377|consen 161 YCPET 165 (657)
T ss_pred Ecccc
Confidence 66655
No 467
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.48 E-value=1.3 Score=25.62 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916 112 PNGHLMATSG-KECKIKIWDLRKYEVLQTL--PGHAKTLDF 149 (359)
Q Consensus 112 ~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~--~~~i~~~~~ 149 (359)
|++++|+++. .+++|.++|..++..+..+ ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 5777776655 5789999999888877766 223455554
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.41 E-value=9.2 Score=33.44 Aligned_cols=108 Identities=13% Similarity=0.173 Sum_probs=68.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCC------CCcc-eEEEec-----cCCCeEEEEEcCCCC------------EE
Q 041916 62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPT------TAAP-LIKMLC-----HQGPVSALAFHPNGH------------LM 117 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~------~~~~-~~~~~~-----h~~~v~~i~~~~~~~------------~l 117 (359)
..+.|+++|.+.+.++....+...+||.. ..++ +.++.. .....+.+.|+.... .+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45789999999999988888999999986 2222 233331 234567888875322 36
Q ss_pred EEEeCCCeEEEEEcCCce-----eeEec----cCCc-eeEEEcCC--c--eEEEE-cCCcEEEEcCC
Q 041916 118 ATSGKECKIKIWDLRKYE-----VLQTL----PGHA-KTLDFSQK--G--LLAVG-TGSFVQILGDF 169 (359)
Q Consensus 118 ~~~~~d~~i~iwd~~~~~-----~~~~~----~~~i-~~~~~s~~--g--l~~~~-~d~~i~i~d~~ 169 (359)
+.+++||+|.-|...-.. ....+ .+.+ ..+++-.. + |+++. ..++|.+||-.
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 778899999999853221 11222 1233 44555543 3 55555 46899999843
No 469
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.38 E-value=10 Score=33.93 Aligned_cols=136 Identities=14% Similarity=0.167 Sum_probs=81.5
Q ss_pred eEEEEEecCCCEEEEEecCCe------EEEEECCC--C--eEE-----EEEecCCC--------CeEEEEEcCCCCEEEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQ------LRYQDVTM--G--EIV-----GNFRTGLG--------RTDVMRVNPFNGVVSL 77 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~v~~~~~sp~~~~l~s 77 (359)
...|.+.|++..+++.+.+|. +..+++.. + ..+ ..+....+ ..-+|++.++|.++++
T Consensus 22 lSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~is 101 (326)
T PF13449_consen 22 LSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFWIS 101 (326)
T ss_pred EeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEEEE
Confidence 388999976656666677777 66666543 1 111 11222222 2337888778888887
Q ss_pred EeCC------CeEEEEeCCCCcceEEEe---------------ccCCCeEEEEEcCCCCEEEEEeC-----CC-------
Q 041916 78 GHSG------GTVTMWKPTTAAPLIKML---------------CHQGPVSALAFHPNGHLMATSGK-----EC------- 124 (359)
Q Consensus 78 g~~d------g~v~lwd~~~~~~~~~~~---------------~h~~~v~~i~~~~~~~~l~~~~~-----d~------- 124 (359)
.-.+ ..|..++.. |.....+. ..+....+|+++|+|+.|+++.+ |+
T Consensus 102 ~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~ 180 (326)
T PF13449_consen 102 SEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDN 180 (326)
T ss_pred eCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccccc
Confidence 6666 778888866 55443331 12345789999999997766643 22
Q ss_pred ----eEEEEEcCC-ceeeEec----c--------CCceeEEEcCCc-eEEE
Q 041916 125 ----KIKIWDLRK-YEVLQTL----P--------GHAKTLDFSQKG-LLAV 157 (359)
Q Consensus 125 ----~i~iwd~~~-~~~~~~~----~--------~~i~~~~~s~~g-l~~~ 157 (359)
.|..||..+ +.+...+ . ..++.+.+-+++ +++.
T Consensus 181 ~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 181 GSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244455554 3333332 2 246888888888 6554
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=91.06 E-value=4.7 Score=35.13 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=62.9
Q ss_pred CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe------CCCeEEEEeCCCCcceEEEec-----cCCCeEEE
Q 041916 40 GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH------SGGTVTMWKPTTAAPLIKMLC-----HQGPVSAL 108 (359)
Q Consensus 40 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~------~dg~v~lwd~~~~~~~~~~~~-----h~~~v~~i 108 (359)
..|++||..+.+-...-.+-.+.|+.|.|..+..++++|. ....+-.||+.+..- ..+.. -+++|+.+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEE
Confidence 4699999887654443344557899999987777777764 355688888876532 22222 24788888
Q ss_pred EEcC-CCC-EEEEEe---CCCeEEEEEcCCceeeEe
Q 041916 109 AFHP-NGH-LMATSG---KECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 109 ~~~~-~~~-~l~~~~---~d~~i~iwd~~~~~~~~~ 139 (359)
.+.. |+. +.+.|. .+..|..||=..+..+..
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 8753 443 333333 234688888777666554
No 471
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.14 E-value=3.2 Score=43.01 Aligned_cols=129 Identities=11% Similarity=0.205 Sum_probs=78.1
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEE--------EEecCCCEEEEEecCCeEEEEECCCCe-------EE--EEEecCCCC
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKL--------QFLRNHFLLASINKFGQLRYQDVTMGE-------IV--GNFRTGLGR 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l--------~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~--~~~~~~~~~ 62 (359)
+++|+ .++.....+.+-... ..+ .|-|.=++|+..+.--.|.++-+.-.+ .. ..+......
T Consensus 101 L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~ 180 (1311)
T KOG1900|consen 101 LFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVS 180 (1311)
T ss_pred EEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCce
Confidence 68999 777777777664442 222 222332344444444566666553211 11 122233456
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeC----CCC---c-----------------ceEEEe-ccCCCeEEEEEcCCCCEE
Q 041916 63 TDVMRVNPFNGVVSLGHSGGTVTMWKP----TTA---A-----------------PLIKML-CHQGPVSALAFHPNGHLM 117 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg~v~lwd~----~~~---~-----------------~~~~~~-~h~~~v~~i~~~~~~~~l 117 (359)
|+|+....+|+.+++| .|| .+|.+ ..+ + .+..+. .+.++|..|++...-..+
T Consensus 181 V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~Il 257 (1311)
T KOG1900|consen 181 VNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNIL 257 (1311)
T ss_pred EEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccccee
Confidence 8899977788777765 555 45543 111 0 011222 457799999999888899
Q ss_pred EEEeCCCeEEEEEcCC
Q 041916 118 ATSGKECKIKIWDLRK 133 (359)
Q Consensus 118 ~~~~~d~~i~iwd~~~ 133 (359)
++-+..++|.+||+..
T Consensus 258 Y~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 258 YVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeccCceEEEEEccC
Confidence 9999999999999976
No 472
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.04 E-value=7.5 Score=34.89 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---eEEE----eccCCCeEEEEEcCC
Q 041916 62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP---LIKM----LCHQGPVSALAFHPN 113 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~---~~~~----~~h~~~v~~i~~~~~ 113 (359)
..+.|+|.|+|.++++ ...|.|.+++ ..+.. +..+ .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 4678999999987765 5699999999 33432 2222 123456789999994
No 473
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.91 E-value=16 Score=33.82 Aligned_cols=130 Identities=12% Similarity=0.212 Sum_probs=75.2
Q ss_pred CEEEEEeCCCeEEEEeCCCCcc-----eEEEeccCCCeEEEEEcC-----CCCEEEEEeCCCeEEEEEcCC--ce-----
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAP-----LIKMLCHQGPVSALAFHP-----NGHLMATSGKECKIKIWDLRK--YE----- 135 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~-----~~~~~~h~~~v~~i~~~~-----~~~~l~~~~~d~~i~iwd~~~--~~----- 135 (359)
..|++||..|.++||++..... +... --..+|..|..-+ +...||+- .-..+.+|.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcccCc
Confidence 5899999999999999865431 1111 2346777777643 23345543 446788887732 11
Q ss_pred -----eeE--eccCCceeEEEcCCc-------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 136 -----VLQ--TLPGHAKTLDFSQKG-------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 136 -----~~~--~~~~~i~~~~~s~~g-------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
.+. .++.....+++-|-| +.+-+.||.+.+|+- .. .....+...-. -...++|+|.-+.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feq-e~-~~f~~~lp~~l----lPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQ-ES-FAFSRFLPDFL----LPGPLCYCPRTDSF 189 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeC-Cc-EEEEEEcCCCC----CCcCeEEeecCCEE
Confidence 111 113334455544422 666788999999983 22 12222222211 23346788888888
Q ss_pred EEEcCCCeE
Q 041916 202 GIGHSMGWS 210 (359)
Q Consensus 202 ~~~~~dg~~ 210 (359)
++++++..+
T Consensus 190 vt~sss~~l 198 (418)
T PF14727_consen 190 VTASSSWTL 198 (418)
T ss_pred EEecCceeE
Confidence 888877543
No 474
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.77 E-value=7.3 Score=29.55 Aligned_cols=113 Identities=13% Similarity=0.101 Sum_probs=69.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCCe--------EEEEEecCCCCeEEEEEcC---C--CCEEEEEeCCCeEEEEeCC
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMGE--------IVGNFRTGLGRTDVMRVNP---F--NGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~sp---~--~~~l~sg~~dg~v~lwd~~ 90 (359)
-.|...+.-|+.++..|.|.|++..... .+..+. -...|++++--+ + ...|+.|+.. .+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3455556678888888999999876432 333443 335677776544 2 3467766654 68999988
Q ss_pred CCcceEEEeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 91 TAAPLIKMLCHQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
...-+.. ..-++.|+++.+-. ...-++..+.+..|.-||....+...+
T Consensus 82 ~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 6654332 22346688887743 122355555567888888765554433
No 475
>PRK13614 lipoprotein LpqB; Provisional
Probab=89.56 E-value=21 Score=34.61 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=76.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcC-Ccee--
Q 041916 62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--KIKIWDLR-KYEV-- 136 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--~i~iwd~~-~~~~-- 136 (359)
.+..++.++++..++....++. .+|-...+.....+.. ...++.-+|+++| .+-+.-.+. .|..+.-. ++..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~-g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~ 420 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTS-GSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQ 420 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeec-CCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccccc
Confidence 5778899999999888877773 3332222333322221 2246778888887 555544433 44443321 1111
Q ss_pred --eEe-----ccC-CceeEEEcCCc---eEEEEcCCc--EEEEcCCC--CCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 137 --LQT-----LPG-HAKTLDFSQKG---LLAVGTGSF--VQILGDFS--GSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 137 --~~~-----~~~-~i~~~~~s~~g---l~~~~~d~~--i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
+.. +.+ .|+.+.+|+|| .+....+|. |+|--+.. .+.+..............+.++.|..++.++
T Consensus 421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~ 500 (573)
T PRK13614 421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVV 500 (573)
T ss_pred ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEE
Confidence 111 134 49999999999 333434554 66543222 1121111111111122378999999998877
Q ss_pred EEEcC
Q 041916 202 GIGHS 206 (359)
Q Consensus 202 ~~~~~ 206 (359)
+.+..
T Consensus 501 V~~~~ 505 (573)
T PRK13614 501 VTKAS 505 (573)
T ss_pred EEecc
Confidence 66543
No 476
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=89.36 E-value=10 Score=37.58 Aligned_cols=90 Identities=19% Similarity=0.238 Sum_probs=53.2
Q ss_pred EEEEEcCCCCEEEEEeCCC-----eEEEEEcCC---ceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCc
Q 041916 106 SALAFHPNGHLMATSGKEC-----KIKIWDLRK---YEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHN 174 (359)
Q Consensus 106 ~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~---~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~ 174 (359)
..++|-|+|..+++-+.|| .|.++.... |..-... ...+..++|+-.. +++++..+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy--- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY--- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccce---
Confidence 4589999999999987655 355554322 2221111 2345777887776 777788899999963221
Q ss_pred cceeecccCCCCcceEEEEEeeCCCE
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYEDV 200 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~~~ 200 (359)
.-|..... .-..+.-+.|+|....
T Consensus 327 -hWYLK~e~-~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVER-QIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEee-cCCCcceeeeccccCc
Confidence 22211111 1114566788887653
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.11 E-value=28 Score=35.37 Aligned_cols=136 Identities=15% Similarity=0.189 Sum_probs=79.2
Q ss_pred cCCCCeEEEEEc---CC----CCEEEEEeCCCeEEEEeCCC---------------CcceEEEecc---CCCeEEEEEcC
Q 041916 58 TGLGRTDVMRVN---PF----NGVVSLGHSGGTVTMWKPTT---------------AAPLIKMLCH---QGPVSALAFHP 112 (359)
Q Consensus 58 ~~~~~v~~~~~s---p~----~~~l~sg~~dg~v~lwd~~~---------------~~~~~~~~~h---~~~v~~i~~~~ 112 (359)
....+|..|+|. .. ..+|++ -....+.|+.+.- ..++..+..+ ..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456788889887 21 234444 3445566776211 1234444321 23567899999
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCc--------eeeEeccCCc----------eeEEEcCCc-eEEEEcCCcEEEEcCCCCC
Q 041916 113 -NGHLMATSGKECKIKIWDLRKY--------EVLQTLPGHA----------KTLDFSQKG-LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 113 -~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~~~i----------~~~~~s~~g-l~~~~~d~~i~i~d~~~~~ 172 (359)
+...||+....|...|||+... .......+.+ ..+.|.++. .+.++....+.++|+.+..
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 5567999999999999999211 1111112222 367787775 5555556788999977653
Q ss_pred CccceeecccCCCCcceEEEEEeeC
Q 041916 173 HNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
........ . ....|.++.-+|.
T Consensus 236 ~~~~l~~~--~-~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 236 QTEYLVTA--K-TWSWILDVKRSPD 257 (765)
T ss_pred ccchhccC--C-ChhheeeEEecCC
Confidence 31111111 1 2336777777776
No 478
>PRK13615 lipoprotein LpqB; Provisional
Probab=88.87 E-value=23 Score=34.19 Aligned_cols=138 Identities=9% Similarity=0.040 Sum_probs=78.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceeeEe-c-
Q 041916 64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVLQT-L- 140 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~-~- 140 (359)
.+++.++++..++....++.+.++... +.....+. ...++.-+|+++| .+-+.-.+...++..... +..... .
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 678999999998888878888887655 22222222 2346777888887 555544433444444332 333211 1
Q ss_pred ---cCCceeEEEcCCc--eEEE-E--cCCcEEEEcCCC-CCCccce-eecccC-CCCcceEEEEEeeCCCEEEEEc
Q 041916 141 ---PGHAKTLDFSQKG--LLAV-G--TGSFVQILGDFS-GSHNYSR-YMGHSM-VKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 141 ---~~~i~~~~~s~~g--l~~~-~--~d~~i~i~d~~~-~~~~~~~-~~~~~~-~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.+.|+.+..|+|| ++.. . ..++|.+--+.. +..+... ...... .....+.++.|..++.+++.+.
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~ 488 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTL 488 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEec
Confidence 3579999999999 3322 2 235666643322 2211111 011100 0122789999999998776663
No 479
>PRK10115 protease 2; Provisional
Probab=88.86 E-value=27 Score=34.92 Aligned_cols=145 Identities=8% Similarity=0.031 Sum_probs=72.2
Q ss_pred EEEEEecCCCEEEEEecC------CeEEEEECCCC--eEEEEEecCCCCeE-EEEEcCCCCEEEEEe---CCCeEEEEeC
Q 041916 22 LKLQFLRNHFLLASINKF------GQLRYQDVTMG--EIVGNFRTGLGRTD-VMRVNPFNGVVSLGH---SGGTVTMWKP 89 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~--~~~~~~~~~~~~v~-~~~~sp~~~~l~sg~---~dg~v~lwd~ 89 (359)
..++|++|+..|+.+..+ ..|..+++.++ +-...+........ .+..+.++.+++..+ .++.+.+|+.
T Consensus 175 ~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 175 PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 569999998766555432 47888899887 33334443333333 233344777655543 3456888884
Q ss_pred C--CCcceEEEeccCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCC-c--eeeEec-c-CCceeEEEcCCc-eEEE
Q 041916 90 T--TAAPLIKMLCHQGPVSALAFHPNGHLMATSGK----ECKIKIWDLRK-Y--EVLQTL-P-GHAKTLDFSQKG-LLAV 157 (359)
Q Consensus 90 ~--~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~-~--~~~~~~-~-~~i~~~~~s~~g-l~~~ 157 (359)
. ++.+...+..-.+....+. +.. ..++..+. ...|...++.. + +.+..- . ..+..+.++.+. +++.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~ 332 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSLD-HYQ-HRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEE 332 (686)
T ss_pred cCCCCCceEEEECCCCCEEEEE-eCC-CEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEE
Confidence 3 3333222222222222222 323 33333332 22454445542 2 222222 2 246778888665 4444
Q ss_pred EcCCc--EEEEcC
Q 041916 158 GTGSF--VQILGD 168 (359)
Q Consensus 158 ~~d~~--i~i~d~ 168 (359)
..++. +.+++.
T Consensus 333 ~~~g~~~l~~~~~ 345 (686)
T PRK10115 333 RQRGLTSLRQINR 345 (686)
T ss_pred EeCCEEEEEEEcC
Confidence 45554 555553
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.26 E-value=3.9 Score=37.55 Aligned_cols=149 Identities=10% Similarity=0.030 Sum_probs=85.8
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEE-EEE-ecCCC----CeE-EEEEcCCCCEEEEEeCCCeEEEE-eCCCC-
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV-GNF-RTGLG----RTD-VMRVNPFNGVVSLGHSGGTVTMW-KPTTA- 92 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~-~~~~~----~v~-~~~~sp~~~~l~sg~~dg~v~lw-d~~~~- 92 (359)
..+-..|||+.|+.-+. ..+.++++...... +.+ ....+ .|+ .+..-..|.-+.+++.||.|.-| |++.+
T Consensus 224 ~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~ 302 (733)
T COG4590 224 SQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDG 302 (733)
T ss_pred HhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCC
Confidence 66778899998877654 58888888654321 111 11111 111 11112234567788899998877 44432
Q ss_pred cc----eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-eEEEEcCCcEEE
Q 041916 93 AP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQI 165 (359)
Q Consensus 93 ~~----~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i 165 (359)
.+ ++.+.-...++..+.-..+.+-+++-...|++.++.....+++..- -..+..+++||.+ .+..-..|.+++
T Consensus 303 ~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~~gki~~ 382 (733)
T COG4590 303 QPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSEDQGKIRL 382 (733)
T ss_pred CCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchheeecCCceEE
Confidence 22 1122222233333332223344777777888887765554433222 3367788999999 666777789999
Q ss_pred EcCCCC
Q 041916 166 LGDFSG 171 (359)
Q Consensus 166 ~d~~~~ 171 (359)
+.+.+.
T Consensus 383 ~~l~Nr 388 (733)
T COG4590 383 AQLENR 388 (733)
T ss_pred EEecCC
Confidence 987654
No 481
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.13 E-value=3.5 Score=39.91 Aligned_cols=72 Identities=13% Similarity=0.028 Sum_probs=45.2
Q ss_pred CCCEEEEEecCCeEEEEECCC----CeEEEEE-ec---------------------CCCCeEEEEEcC----CCCEEEEE
Q 041916 29 NHFLLASINKFGQLRYQDVTM----GEIVGNF-RT---------------------GLGRTDVMRVNP----FNGVVSLG 78 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~-~~---------------------~~~~v~~~~~sp----~~~~l~sg 78 (359)
+...|+.+..||.+....... +...... .. ..+.+..+++++ +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 666777778888888877664 2222111 10 112355666666 66899999
Q ss_pred eCCCeEEEEeCCCCcceEEEec
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
+.|+.+++||+.++.++.+...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEET
T ss_pred eCCCeEEEEECCCCeEEEEecc
Confidence 9999999999999998776543
No 482
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.91 E-value=14 Score=30.46 Aligned_cols=147 Identities=17% Similarity=0.137 Sum_probs=80.9
Q ss_pred eEEEe-CCCcEEEEeccC-CCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYN-RDGTELHCLKEH-GAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
|++|| .+|+++..-.-. ..+ -.+.-..|.-+.+| -.+|.-..+|.++.+++..+.-. +.-+.++. |+..|..
T Consensus 70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LT-w~egvaf~~d~~t~~~lg~~~y~-GeGWgLt~--d~~~Lim 145 (262)
T COG3823 70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLT-WKEGVAFKYDADTLEELGRFSYE-GEGWGLTS--DDKNLIM 145 (262)
T ss_pred eEEEeccCceEEEEeecCCccccccceeeccceEEEEE-eccceeEEEChHHhhhhcccccC-Ccceeeec--CCcceEe
Confidence 67788 667766543322 122 23333333334444 45888899999988888777633 34455553 4444555
Q ss_pred EeCCCeEEEEeCCCCcceEEEecc--C---CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----------
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCH--Q---GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP----------- 141 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h--~---~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------- 141 (359)
++...++..-|+.+.....+++.- . ..++.+.|- +|...|-.=.+..|...|..+|+.+..+.
T Consensus 146 sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~ 224 (262)
T COG3823 146 SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLD 224 (262)
T ss_pred eCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCcc
Confidence 555566777777665443333211 1 122333332 55555555555566666777776655441
Q ss_pred ----CCceeEEEcCCc
Q 041916 142 ----GHAKTLDFSQKG 153 (359)
Q Consensus 142 ----~~i~~~~~s~~g 153 (359)
.-.+.+++.|++
T Consensus 225 ~~~~nvlNGIA~~~~~ 240 (262)
T COG3823 225 KSNDNVLNGIAHDPQQ 240 (262)
T ss_pred ccccccccceeecCcC
Confidence 124677777776
No 483
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=87.74 E-value=16 Score=32.13 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=51.4
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--------------------CeEEEEe
Q 041916 29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG--------------------GTVTMWK 88 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d--------------------g~v~lwd 88 (359)
+|++-++=+..|.|..+|.++|+....... .+....++|. |.++++|-.. .-|.+.|
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~v-pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vid 288 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFL-PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVID 288 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEEC-CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEE
Confidence 567777777788999999887864333322 2467788887 7777665321 2356667
Q ss_pred CCCCcceEEEe--ccCCCeEEEEEcCC
Q 041916 89 PTTAAPLIKML--CHQGPVSALAFHPN 113 (359)
Q Consensus 89 ~~~~~~~~~~~--~h~~~v~~i~~~~~ 113 (359)
+++|..+..+. +--..+.++++-|.
T Consensus 289 l~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 289 LNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred CCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 77776655443 33345566666664
No 484
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.08 E-value=29 Score=32.24 Aligned_cols=181 Identities=10% Similarity=0.014 Sum_probs=97.0
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------------
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA----------------- 92 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~----------------- 92 (359)
..++++=+.||.+.+|+-+..-....+.. .--...+++.|....|++++.+..+..|....-
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~ 223 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDI 223 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccc
Confidence 36788889999999999765444444443 223445778888888999998888888864210
Q ss_pred ---c---ceEEEeccCCCeE---EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE--eccCCceeEE-------EcCCc-
Q 041916 93 ---A---PLIKMLCHQGPVS---ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ--TLPGHAKTLD-------FSQKG- 153 (359)
Q Consensus 93 ---~---~~~~~~~h~~~v~---~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--~~~~~i~~~~-------~s~~g- 153 (359)
+ +-.++... ..+. .+.++.....+++-+. .++.+.+.. |.... .+.....+++ ..|+.
T Consensus 224 ~~~k~l~~dWs~nlG-E~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~ 300 (418)
T PF14727_consen 224 SSGKKLNPDWSFNLG-EQALDIQVVRFSSSESDIVVLGE-RSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTR 300 (418)
T ss_pred cccccccceeEEECC-ceeEEEEEEEcCCCCceEEEEec-ceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCc
Confidence 0 11111111 1222 2333333334444443 456665553 43322 3333333332 23332
Q ss_pred --eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 154 --LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 154 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+++++.++++.||.-.+ -....-..+. .-.|.-..|..-...+++-+.+|.+.+-+-|+..
T Consensus 301 ~~llV~t~t~~LlVy~d~~--L~WsA~l~~~---PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 301 LNLLVGTHTGTLLVYEDTT--LVWSAQLPHV---PVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred eEEEEEecCCeEEEEeCCe--EEEecCCCCC---CEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 77788899999997221 1111111221 0023333344445567777778887777766554
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.99 E-value=41 Score=35.51 Aligned_cols=144 Identities=9% Similarity=0.093 Sum_probs=80.6
Q ss_pred EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEE-cCC-------CCEEEEEeCCCeEEEEeCC--
Q 041916 22 LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV-NPF-------NGVVSLGHSGGTVTMWKPT-- 90 (359)
Q Consensus 22 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-sp~-------~~~l~sg~~dg~v~lwd~~-- 90 (359)
+.|-+-|. ++.= .+.|+.+.+|+..++.....+.+-...|..+.. -|. =++++.-+.--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 44544453 3322 245789999999997777777665555555432 222 2233333333345555332
Q ss_pred --CCcc---e--EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC----C---ce-e-------------eEec--
Q 041916 91 --TAAP---L--IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR----K---YE-V-------------LQTL-- 140 (359)
Q Consensus 91 --~~~~---~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~----~---~~-~-------------~~~~-- 140 (359)
++.. . .++......|+||+...+|+.+++| .|| .+|.+- . ++ + +.++
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~ 236 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLS 236 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhc
Confidence 1110 0 1122234568899977888877765 455 445441 1 01 1 0111
Q ss_pred -c----CCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916 141 -P----GHAKTLDFSQKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 141 -~----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~ 170 (359)
+ .+|..+++.... +++-+..|+|.+||+..
T Consensus 237 ~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 237 VPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 2 367788887766 77888899999999765
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.97 E-value=23 Score=31.05 Aligned_cols=112 Identities=15% Similarity=0.167 Sum_probs=70.3
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECC------CC-eEEEEEec-----CCCCeEEEEEcCCCC------------EEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVT------MG-EIVGNFRT-----GLGRTDVMRVNPFNG------------VVS 76 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~sp~~~------------~l~ 76 (359)
.+.|+|+|.+.+-++....+...+||.. .. ..+-.+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3899999999888888888999999986 12 22333332 224577888875432 356
Q ss_pred EEeCCCeEEEEeCCCCcc-----eEEEecc-CCCe-EEEEEc--CCCCEEEEEe-CCCeEEEEEcC
Q 041916 77 LGHSGGTVTMWKPTTAAP-----LIKMLCH-QGPV-SALAFH--PNGHLMATSG-KECKIKIWDLR 132 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~-----~~~~~~h-~~~v-~~i~~~--~~~~~l~~~~-~d~~i~iwd~~ 132 (359)
.++.||+|.-|....... ...+... .+.| ..+++. ..+.+|+.+. ..++|-+||-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 678999999998643322 2222211 2333 344544 3456666654 56788888864
No 487
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=85.69 E-value=3.8 Score=23.26 Aligned_cols=29 Identities=17% Similarity=0.414 Sum_probs=18.0
Q ss_pred cCCCeEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 041916 101 HQGPVSALAFHPNGHLMATSG-KE--CKIKIW 129 (359)
Q Consensus 101 h~~~v~~i~~~~~~~~l~~~~-~d--~~i~iw 129 (359)
........+|+|||++|+.++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445667888999998876655 33 444444
No 488
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.23 E-value=30 Score=31.62 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=94.4
Q ss_pred eEEEeCCCcEEEEeccCCCeE--EEEE--ecCCCE--EEEEec-C---CeEEEEECC--CCeEEEEEecC-------CCC
Q 041916 2 PYIYNRDGTELHCLKEHGAVL--KLQF--LRNHFL--LASINK-F---GQLRYQDVT--MGEIVGNFRTG-------LGR 62 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~~--~l~~--s~~~~~--l~s~~~-d---g~i~iwd~~--~~~~~~~~~~~-------~~~ 62 (359)
+++||.+|+++..+... .++ .+.+ .-+|.. |+.++. + .+|++|.+. ++. +..+... ...
T Consensus 80 L~VYdL~Gk~lq~~~~G-r~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e 157 (381)
T PF02333_consen 80 LYVYDLDGKELQSLPVG-RPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSE 157 (381)
T ss_dssp EEEEETTS-EEEEE-SS--EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSS
T ss_pred EEEEcCCCcEEEeecCC-CcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCccccccccc
Confidence 57899999999888532 222 2222 223432 444443 2 479999775 343 3333321 123
Q ss_pred eEEEEE--cC-CCC-EEEEEeCCCeEEEEeCC---CC----cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916 63 TDVMRV--NP-FNG-VVSLGHSGGTVTMWKPT---TA----APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL 131 (359)
Q Consensus 63 v~~~~~--sp-~~~-~l~sg~~dg~v~lwd~~---~~----~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~ 131 (359)
+..+|+ +| +|. +++....+|.+..|.+. .+ +.++.|.. .+.+..+++.....+|+.+-++.-|.-|+.
T Consensus 158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~A 236 (381)
T PF02333_consen 158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDA 236 (381)
T ss_dssp EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEES
T ss_pred ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEec
Confidence 556665 44 344 56667889998888764 22 24566654 457889999998889999999988888887
Q ss_pred CC-----ceeeEec-----cCCceeEEEc--CCc---eEEEE-cCCcEEEEcCC
Q 041916 132 RK-----YEVLQTL-----PGHAKTLDFS--QKG---LLAVG-TGSFVQILGDF 169 (359)
Q Consensus 132 ~~-----~~~~~~~-----~~~i~~~~~s--~~g---l~~~~-~d~~i~i~d~~ 169 (359)
.. +..+... ...+-.|++- ++| |++.+ .++...||+..
T Consensus 237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence 63 2233222 2345666663 344 44444 35789999943
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.81 E-value=8.3 Score=27.03 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=28.1
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG 121 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~ 121 (359)
+..+|.+.-||+.+++....+.+ -..-+.|+++||+.+++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 34568899999998875444443 23458899999999876653
No 490
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=84.66 E-value=28 Score=30.77 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=50.7
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-----eEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-----TDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
+++...++|.+|+|+-.-.+|.+.|..+|+.+..+.+.... -...+|-.+-+.+-.+..++.|.|+|-
T Consensus 147 NsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 147 NSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 67777788999999988899999999999999998766221 112444444455555678889999985
No 491
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=27 Score=30.44 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=84.9
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE---EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce---
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN---FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL--- 95 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~--- 95 (359)
..+.|+ +++...+..+.-++|.|+.+...... +... +--.+ |.-.|++...+..|.-+.+.|+.+.+..
T Consensus 90 ~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~-gyayg--v~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 90 ADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD-GYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred heeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC-ceEEE--EEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 445554 45666677777899999987653322 2221 22233 4445778888875555778888765432
Q ss_pred EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeEec--cCCceeEEEcCCc-eEEEEcCCcEEEEcC
Q 041916 96 IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQTL--PGHAKTLDFSQKG-LLAVGTGSFVQILGD 168 (359)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~--~~~i~~~~~s~~g-l~~~~~d~~i~i~d~ 168 (359)
..+....+.-..++. .|++-+.+..|+-+.+-|+.+.. .+... ...+.++..+++. +++.. +--+.+-|.
T Consensus 165 grya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy-~egvlivd~ 240 (370)
T COG5276 165 GRYALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY-DEGVLIVDV 240 (370)
T ss_pred eeeccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc-ccceEEEec
Confidence 223233333355665 47788888899999999997642 23333 3367888888888 44444 434555553
No 492
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=83.89 E-value=23 Score=29.31 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=60.2
Q ss_pred CEEEEEeCCCeEEEEeCCC--CcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---C---eEEEE-EcCC----ceeeE-
Q 041916 73 GVVSLGHSGGTVTMWKPTT--AAPLIKMLCHQGPVSALAFHPNGHLMATSGKE---C---KIKIW-DLRK----YEVLQ- 138 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d---~---~i~iw-d~~~----~~~~~- 138 (359)
..|+.+...+.|.+|++.+ .+++..|.. -+.|..+.++..|+||+|--.+ . .+++| |.+. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 3444446677899999883 334555543 4789999999999999997432 2 56665 2221 11111
Q ss_pred ----------------------ec--cCCceeEEEcCC-ceEEEEcCCcEEEEcCCC
Q 041916 139 ----------------------TL--PGHAKTLDFSQK-GLLAVGTGSFVQILGDFS 170 (359)
Q Consensus 139 ----------------------~~--~~~i~~~~~s~~-gl~~~~~d~~i~i~d~~~ 170 (359)
.+ ..++.+++..|- |=+.+|.++.+.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEE
Confidence 01 234677777774 444455578899987543
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.82 E-value=5.1 Score=22.71 Aligned_cols=32 Identities=9% Similarity=0.203 Sum_probs=19.7
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 041916 56 FRTGLGRTDVMRVNPFNGVVSLGH-SG--GTVTMW 87 (359)
Q Consensus 56 ~~~~~~~v~~~~~sp~~~~l~sg~-~d--g~v~lw 87 (359)
+......-....|||||+.|+-++ .+ |.-.||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334455677899999998776654 44 555554
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.60 E-value=26 Score=36.56 Aligned_cols=28 Identities=21% Similarity=0.117 Sum_probs=25.1
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTM 49 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~ 49 (359)
..++|+|.-.++|.+..+|.|.++-...
T Consensus 39 ~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 39 SALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred cceeeccccceEEEEEecccEEEecccc
Confidence 7789999999999999999999998653
No 495
>PRK13615 lipoprotein LpqB; Provisional
Probab=83.21 E-value=40 Score=32.64 Aligned_cols=96 Identities=5% Similarity=-0.081 Sum_probs=60.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC-CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccC
Q 041916 106 SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG-HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM 183 (359)
Q Consensus 106 ~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 183 (359)
.+++.++++..++....++.+.++... +.....+.+ .++.-+|.++| +.++..+...++........... ....-.
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~~~Lt~PS~d~~g~vWtv~~g~~~~l~~~~~~G~~~~-v~v~~~ 414 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTRPGLVAPSLDAQGYVWSTPASDPRGLVAWGPDGVGHP-VAVSWT 414 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccCCccccCcCcCCCCEEEEeCCCceEEEEecCCCceEE-eecccc
Confidence 788999999999888878888887665 222223344 47888999999 55555444445444222212221 111111
Q ss_pred CCCcceEEEEEeeCCCEEEEE
Q 041916 184 VKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 184 ~~~~~v~~~~~~p~~~~l~~~ 204 (359)
.+..|..+..|+||-.++.-
T Consensus 415 -~~~~I~~lrvSrDG~R~Avi 434 (557)
T PRK13615 415 -ATGRVVSLEVARDGARVLVQ 434 (557)
T ss_pred -CCCeeEEEEeCCCccEEEEE
Confidence 33479999999999876654
No 496
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=82.92 E-value=62 Score=33.46 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=85.4
Q ss_pred eEEEe-CCCcEEEEeccCCC-----eEEEEEecCC--CEEEEEec-----------CCeEEEEECC-CCeEEEEEec--C
Q 041916 2 PYIYN-RDGTELHCLKEHGA-----VLKLQFLRNH--FLLASINK-----------FGQLRYQDVT-MGEIVGNFRT--G 59 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~-----~~~l~~s~~~--~~l~s~~~-----------dg~i~iwd~~-~~~~~~~~~~--~ 59 (359)
|.+.| .+|..+..+....+ +..+.|+... .++++|.. +|.++.|++- .|+.+.-+.. -
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~ 934 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI 934 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence 67778 66766666554333 2555665533 24444432 2445666553 3442222221 1
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-cee
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEV 136 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~ 136 (359)
.++|. +..|...++++| ....+++||+...++++... .-+..|+.+.+ .+..+++|...-.|.++-.+. ...
T Consensus 935 ~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 935 PGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred Cccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 23444 445655555544 45689999998776665433 22455667766 455677776544555444332 233
Q ss_pred eEec-----cCCceeEEEcCCceEEEE-cCCcEEEEc
Q 041916 137 LQTL-----PGHAKTLDFSQKGLLAVG-TGSFVQILG 167 (359)
Q Consensus 137 ~~~~-----~~~i~~~~~s~~gl~~~~-~d~~i~i~d 167 (359)
+..+ +.+++++.+-..+-++++ .=|.+.+..
T Consensus 1010 l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELLDYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred EEEEeCCCccceeeEEEEecCCceeeccccCcEEEEE
Confidence 4444 345677777666633333 336665554
No 497
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.83 E-value=3.8 Score=22.13 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=20.8
Q ss_pred EEEEEecCCeEEEEECCCCeEEEEE
Q 041916 32 LLASINKFGQLRYQDVTMGEIVGNF 56 (359)
Q Consensus 32 ~l~s~~~dg~i~iwd~~~~~~~~~~ 56 (359)
.++.++.+|.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999877654
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=82.78 E-value=6.4 Score=38.99 Aligned_cols=132 Identities=12% Similarity=0.179 Sum_probs=81.3
Q ss_pred CEEEEEecCCeEEEEECCCCeE---EEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEE--------EeCCCCcceEEE
Q 041916 31 FLLASINKFGQLRYQDVTMGEI---VGNF-RTGLGRTDVMRVNPFNGVVSLGHSGGTVTM--------WKPTTAAPLIKM 98 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~~~~---~~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l--------wd~~~~~~~~~~ 98 (359)
..+..|+.++.|.++....+.. ...+ ......+.++.+++. -+..|.-||++-. ||.. +-..+
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~e---p~~~~ 622 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGE---PNISI 622 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCC---Ccccc
Confidence 3567788899999998763321 1111 122345666666553 2334445555443 4432 33333
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc-eEEEEcCCcEEEEcCCC
Q 041916 99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG-LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~ 170 (359)
.....+|++.++..| ++.++.+|.|.++...+....... ...|+++.....| +++...+..++.++..+
T Consensus 623 ~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred ccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccc
Confidence 334567888888655 556677899999998876554444 2358999999999 66666666777765443
No 499
>PRK13613 lipoprotein LpqB; Provisional
Probab=82.41 E-value=52 Score=32.26 Aligned_cols=180 Identities=12% Similarity=0.003 Sum_probs=0.0
Q ss_pred CCeEEEEE------CCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCC-eEEEEeCCCCcc----eEEEeccCCCeE
Q 041916 39 FGQLRYQD------VTMGEIVGNFRTGLG-RTDVMRVNPFNGVVSLGHSGG-TVTMWKPTTAAP----LIKMLCHQGPVS 106 (359)
Q Consensus 39 dg~i~iwd------~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~sg~~dg-~v~lwd~~~~~~----~~~~~~h~~~v~ 106 (359)
+|.+...+ -....++.-..+... .+.+++.++++..++..+.++ .+++..+..+.. ...+.. ...++
T Consensus 334 ~G~~~~~~~~~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~-~~~Lt 412 (599)
T PRK13613 334 DGQLWLLRISGTSNGTDPEPVPGALGSGRVPLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA-DGRLT 412 (599)
T ss_pred CCceEEEeccccccCCCcccCCCccCCCCCCccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec-cCccc
Q ss_pred EEEEcCCCCEEEEEeC----CCeEEEEEcCCceeeEec----cC-CceeEEEcCCc-----eEEEEcCCcEEEEcCCCCC
Q 041916 107 ALAFHPNGHLMATSGK----ECKIKIWDLRKYEVLQTL----PG-HAKTLDFSQKG-----LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 107 ~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~----~~-~i~~~~~s~~g-----l~~~~~d~~i~i~d~~~~~ 172 (359)
.-+|.++| .+-+... ...+++..- ++.+...- .+ .|..+..|+|| ++-.+..+.|+|--+..+.
T Consensus 413 ~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~ 490 (599)
T PRK13613 413 SPSWDGRG-DLWVVDRDPADPRLLWLLQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDA 490 (599)
T ss_pred CCcCcCCC-CEEEecCCCCCceEEEEEcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCC
Q ss_pred CccceeecccC--CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916 173 HNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN 221 (359)
Q Consensus 173 ~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~ 221 (359)
.-...+..... .....+.+++|..++.+++.|...+...-.....-||.
T Consensus 491 ~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~ 541 (599)
T PRK13613 491 KAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGS 541 (599)
T ss_pred CCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcceEEEecCCc
No 500
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.97 E-value=41 Score=30.74 Aligned_cols=145 Identities=12% Similarity=0.170 Sum_probs=79.6
Q ss_pred EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc----CCCCE--EEEEe-CC---CeEEEEe
Q 041916 22 LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN----PFNGV--VSLGH-SG---GTVTMWK 88 (359)
Q Consensus 22 ~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s----p~~~~--l~sg~-~d---g~v~lwd 88 (359)
-.|-.+| ...+++.....+-+.+||+. |+.+..+.. +.++.+..- -.|.. |+.++ .+ .+|.+|.
T Consensus 57 PAIWvnp~dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 57 PAIWVNPADPAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EEEE--SS-GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred CcEecCCCCcccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 4444454 34677777888899999997 777777752 344433321 12332 44443 32 4689997
Q ss_pred CCCC-cceEEEec-------cCCCeEEEEE--cC-CCC-EEEEEeCCCeEEEEEcC---Cc----eeeEec--cCCceeE
Q 041916 89 PTTA-APLIKMLC-------HQGPVSALAF--HP-NGH-LMATSGKECKIKIWDLR---KY----EVLQTL--PGHAKTL 147 (359)
Q Consensus 89 ~~~~-~~~~~~~~-------h~~~v~~i~~--~~-~~~-~l~~~~~d~~i~iwd~~---~~----~~~~~~--~~~i~~~ 147 (359)
+... ..+..+.. ....+..+|+ +| +|. +.++...+|.+..|-+. .+ +.++.| .+.+..|
T Consensus 134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC 213 (381)
T ss_dssp EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence 6521 12333221 1123566666 44 455 45667788988888764 22 457777 4567777
Q ss_pred EEcCCc--eEEEEcCCcEEEEcCC
Q 041916 148 DFSQKG--LLAVGTGSFVQILGDF 169 (359)
Q Consensus 148 ~~s~~g--l~~~~~d~~i~i~d~~ 169 (359)
...... ++.+-.+--|.-|+..
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESS
T ss_pred EEecccCCEEEecCccEEEEEecC
Confidence 777654 7777777677777754
Done!