Query 041916
Match_columns 359
No_of_seqs 553 out of 3486
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 20:46:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041916.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041916hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 2.7E-37 9.2E-42 284.5 28.6 211 1-216 131-368 (410)
2 3ow8_A WD repeat-containing pr 100.0 2.8E-36 9.5E-41 268.6 29.4 209 1-214 103-318 (321)
3 3ow8_A WD repeat-containing pr 100.0 5.6E-36 1.9E-40 266.6 30.4 213 1-218 59-280 (321)
4 2ynn_A Coatomer subunit beta'; 100.0 9.5E-36 3.2E-40 263.1 30.4 212 1-217 36-259 (304)
5 4gqb_B Methylosome protein 50; 100.0 1.5E-35 5.2E-40 266.2 30.1 208 1-214 104-328 (344)
6 1vyh_C Platelet-activating fac 100.0 2.4E-35 8.4E-40 271.4 31.5 209 1-214 173-408 (410)
7 2ynn_A Coatomer subunit beta'; 100.0 2.3E-35 7.9E-40 260.6 29.7 217 11-231 5-261 (304)
8 1got_B GT-beta; complex (GTP-b 100.0 5.1E-35 1.7E-39 262.5 30.5 213 1-217 78-301 (340)
9 1got_B GT-beta; complex (GTP-b 100.0 1.1E-34 3.8E-39 260.3 31.1 206 2-213 121-339 (340)
10 4gqb_B Methylosome protein 50; 100.0 2.3E-35 7.8E-40 265.0 25.9 193 18-216 82-288 (344)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.2E-35 2.5E-39 262.1 26.7 201 10-214 6-222 (345)
12 2pbi_B Guanine nucleotide-bind 100.0 4.2E-34 1.4E-38 258.0 31.4 194 15-213 150-353 (354)
13 4ery_A WD repeat-containing pr 100.0 7E-34 2.4E-38 251.7 32.1 218 9-230 13-269 (312)
14 3frx_A Guanine nucleotide-bind 100.0 7E-34 2.4E-38 252.8 29.3 201 1-208 41-259 (319)
15 4ery_A WD repeat-containing pr 100.0 1.9E-33 6.5E-38 248.9 31.6 217 1-219 46-270 (312)
16 1erj_A Transcriptional repress 100.0 1.6E-33 5.4E-38 257.8 30.5 213 1-218 86-342 (393)
17 4g56_B MGC81050 protein; prote 100.0 7.6E-34 2.6E-38 256.6 26.3 209 1-215 116-341 (357)
18 3iz6_a 40S ribosomal protein R 100.0 1.7E-33 5.8E-38 256.5 27.9 212 1-217 89-375 (380)
19 1nr0_A Actin interacting prote 100.0 2.9E-33 9.9E-38 270.4 29.8 209 1-213 171-518 (611)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-33 1.3E-37 250.8 28.4 213 1-216 39-282 (345)
21 3frx_A Guanine nucleotide-bind 100.0 6.7E-33 2.3E-37 246.5 29.6 213 1-215 88-315 (319)
22 3vl1_A 26S proteasome regulato 100.0 1.1E-33 3.8E-38 260.4 22.9 210 1-214 79-319 (420)
23 3dwl_C Actin-related protein 2 100.0 8.6E-34 2.9E-38 257.6 21.5 210 1-214 34-279 (377)
24 2pbi_B Guanine nucleotide-bind 100.0 2E-32 7E-37 247.0 30.2 200 10-214 55-268 (354)
25 2xzm_R RACK1; ribosome, transl 100.0 2.5E-32 8.5E-37 245.3 30.5 212 1-215 99-338 (343)
26 2hes_X YDR267CP; beta-propelle 100.0 1.5E-32 5.2E-37 245.4 27.8 211 1-214 81-325 (330)
27 1erj_A Transcriptional repress 100.0 5.8E-32 2E-36 247.4 31.4 208 1-214 146-386 (393)
28 2pm7_B Protein transport prote 100.0 4.4E-32 1.5E-36 238.8 29.3 212 1-216 32-284 (297)
29 4g56_B MGC81050 protein; prote 100.0 5.7E-33 1.9E-37 250.9 23.9 208 2-215 72-299 (357)
30 3iz6_a 40S ribosomal protein R 100.0 2.4E-33 8.3E-38 255.5 21.2 207 4-214 50-277 (380)
31 2hes_X YDR267CP; beta-propelle 100.0 4.1E-32 1.4E-36 242.6 28.2 211 1-216 35-279 (330)
32 4aow_A Guanine nucleotide-bind 100.0 5.8E-32 2E-36 241.5 28.9 209 8-217 27-337 (340)
33 2ymu_A WD-40 repeat protein; u 100.0 9.5E-32 3.2E-36 257.6 30.4 204 1-213 367-576 (577)
34 2xzm_R RACK1; ribosome, transl 100.0 2.3E-31 7.9E-36 239.0 30.4 199 11-215 13-242 (343)
35 2ymu_A WD-40 repeat protein; u 100.0 1.8E-31 6.2E-36 255.7 31.4 205 1-214 326-536 (577)
36 1gxr_A ESG1, transducin-like e 100.0 1.6E-31 5.3E-36 238.2 28.8 213 1-219 73-298 (337)
37 3vl1_A 26S proteasome regulato 100.0 7.4E-32 2.5E-36 248.2 27.3 213 1-217 120-365 (420)
38 1nr0_A Actin interacting prote 100.0 8.2E-32 2.8E-36 260.2 28.5 209 1-216 40-269 (611)
39 2pm7_B Protein transport prote 100.0 1.4E-31 4.9E-36 235.5 26.7 202 12-217 2-238 (297)
40 4aez_A CDC20, WD repeat-contai 100.0 6.4E-31 2.2E-35 241.1 31.7 206 1-214 114-333 (401)
41 2j04_B YDR362CP, TAU91; beta p 100.0 3E-32 1E-36 257.1 22.9 209 1-215 184-426 (524)
42 3bg1_A Protein SEC13 homolog; 100.0 3.9E-32 1.3E-36 241.3 21.2 212 1-216 36-292 (316)
43 3dm0_A Maltose-binding peripla 100.0 2.8E-31 9.6E-36 260.2 28.0 209 1-216 406-631 (694)
44 3dm0_A Maltose-binding peripla 100.0 6E-31 2.1E-35 257.9 29.1 214 1-215 453-691 (694)
45 4gga_A P55CDC, cell division c 100.0 4E-30 1.4E-34 237.2 32.3 209 1-214 126-392 (420)
46 2aq5_A Coronin-1A; WD40 repeat 100.0 1.2E-30 4.1E-35 239.2 28.6 215 1-219 58-301 (402)
47 3jrp_A Fusion protein of prote 100.0 1.6E-30 5.3E-35 235.4 28.7 216 1-216 34-286 (379)
48 3jrp_A Fusion protein of prote 100.0 2.1E-31 7.2E-36 241.2 23.0 206 9-218 1-241 (379)
49 3zwl_B Eukaryotic translation 100.0 6.9E-30 2.4E-34 230.2 32.1 208 1-214 55-343 (369)
50 3k26_A Polycomb protein EED; W 100.0 2.3E-31 7.7E-36 239.8 22.2 215 1-219 45-320 (366)
51 3k26_A Polycomb protein EED; W 100.0 4.1E-31 1.4E-35 238.2 22.7 210 1-214 96-363 (366)
52 1gxr_A ESG1, transducin-like e 100.0 1.4E-29 4.8E-34 225.5 31.4 207 1-214 120-334 (337)
53 2pm9_A Protein WEB1, protein t 100.0 5.5E-31 1.9E-35 241.9 22.9 210 1-215 46-292 (416)
54 3f3f_A Nucleoporin SEH1; struc 100.0 3.7E-30 1.3E-34 229.6 27.2 201 13-217 5-337 (351)
55 3bg1_A Protein SEC13 homolog; 100.0 4.8E-31 1.7E-35 234.2 20.9 200 14-217 8-247 (316)
56 1k8k_C P40, ARP2/3 complex 41 100.0 6.4E-30 2.2E-34 231.1 28.1 211 1-217 31-274 (372)
57 4h5i_A Guanine nucleotide-exch 100.0 5E-30 1.7E-34 232.2 26.7 188 21-215 136-341 (365)
58 3ei3_B DNA damage-binding prot 100.0 8.9E-30 3E-34 231.7 28.0 201 7-214 61-279 (383)
59 1sq9_A Antiviral protein SKI8; 100.0 3.4E-30 1.2E-34 235.2 25.0 213 1-216 92-394 (397)
60 3v7d_B Cell division control p 100.0 1.6E-29 5.4E-34 235.9 30.0 203 1-213 143-377 (464)
61 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-30 1.9E-34 255.1 28.5 212 1-217 36-259 (814)
62 3i2n_A WD repeat-containing pr 100.0 2.1E-30 7.2E-35 232.8 23.0 213 1-218 45-292 (357)
63 4ggc_A P55CDC, cell division c 100.0 3E-29 1E-33 221.8 29.9 209 1-214 46-312 (318)
64 4aez_A CDC20, WD repeat-contai 100.0 1.9E-29 6.4E-34 231.3 29.3 211 1-217 157-380 (401)
65 3ei3_B DNA damage-binding prot 100.0 8.4E-30 2.9E-34 231.9 26.2 207 1-214 142-379 (383)
66 2xyi_A Probable histone-bindin 100.0 1.1E-29 3.6E-34 235.2 26.9 213 1-214 152-407 (430)
67 3zwl_B Eukaryotic translation 100.0 2.2E-29 7.6E-34 226.9 28.0 201 11-216 24-248 (369)
68 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-29 8.4E-34 261.3 31.7 209 1-214 638-910 (1249)
69 1r5m_A SIR4-interacting protei 100.0 1.7E-29 5.8E-34 232.0 26.5 210 1-216 131-360 (425)
70 3mkq_A Coatomer beta'-subunit; 100.0 1.7E-29 5.7E-34 251.6 28.5 216 11-230 5-260 (814)
71 3mmy_A MRNA export factor; mRN 100.0 2E-29 6.9E-34 227.1 26.1 196 7-208 27-337 (368)
72 1sq9_A Antiviral protein SKI8; 100.0 9.9E-30 3.4E-34 232.1 23.8 212 1-218 37-323 (397)
73 3dw8_B Serine/threonine-protei 100.0 1.9E-29 6.5E-34 233.9 25.7 216 1-218 51-374 (447)
74 2j04_B YDR362CP, TAU91; beta p 100.0 4.7E-30 1.6E-34 242.1 21.7 168 1-169 236-427 (524)
75 1k8k_C P40, ARP2/3 complex 41 100.0 5.7E-29 1.9E-33 224.9 27.8 211 1-215 75-359 (372)
76 4e54_B DNA damage-binding prot 100.0 9.4E-30 3.2E-34 235.9 22.4 204 13-221 113-331 (435)
77 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-28 5.3E-33 227.6 30.3 202 1-215 154-363 (435)
78 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-28 3.9E-33 217.4 28.0 206 1-218 40-256 (313)
79 1r5m_A SIR4-interacting protei 100.0 3.7E-29 1.2E-33 229.8 25.6 221 3-229 28-319 (425)
80 3dwl_C Actin-related protein 2 100.0 9E-31 3.1E-35 237.6 14.6 197 18-219 10-238 (377)
81 4a11_B DNA excision repair pro 100.0 9.7E-29 3.3E-33 225.9 28.1 214 1-219 67-367 (408)
82 4gq1_A NUP37; propeller, trans 100.0 1.8E-29 6.2E-34 230.9 23.2 209 1-214 112-387 (393)
83 4e54_B DNA damage-binding prot 100.0 8.1E-30 2.8E-34 236.3 20.3 228 1-230 143-388 (435)
84 2pm9_A Protein WEB1, protein t 100.0 2.5E-29 8.7E-34 230.7 23.3 213 1-218 90-338 (416)
85 3i2n_A WD repeat-containing pr 100.0 3.1E-29 1E-33 225.2 23.4 211 1-216 91-352 (357)
86 4a11_B DNA excision repair pro 100.0 3.4E-29 1.2E-33 228.9 23.8 214 3-217 26-276 (408)
87 3jro_A Fusion protein of prote 100.0 1.6E-29 5.4E-34 249.7 22.8 198 12-213 2-234 (753)
88 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.1E-28 3.9E-33 229.6 27.3 193 21-215 105-337 (450)
89 3jro_A Fusion protein of prote 100.0 5.7E-29 2E-33 245.8 26.2 215 1-216 32-284 (753)
90 2w18_A PALB2, fancn, partner a 100.0 1.8E-28 6.3E-33 214.2 25.2 208 1-214 64-354 (356)
91 3lrv_A PRE-mRNA-splicing facto 100.0 2E-28 6.7E-33 219.8 25.4 203 7-219 112-335 (343)
92 3lrv_A PRE-mRNA-splicing facto 100.0 1.1E-28 3.9E-33 221.4 23.4 211 1-217 59-292 (343)
93 3v7d_B Cell division control p 100.0 1.1E-27 3.8E-32 223.4 30.6 209 1-218 184-422 (464)
94 2aq5_A Coronin-1A; WD40 repeat 100.0 9.4E-29 3.2E-33 226.6 22.7 211 1-215 105-340 (402)
95 3gre_A Serine/threonine-protei 100.0 2.8E-28 9.4E-33 225.8 23.8 212 1-213 134-436 (437)
96 3gre_A Serine/threonine-protei 100.0 1.8E-28 6E-33 227.1 22.5 210 4-219 47-294 (437)
97 1yfq_A Cell cycle arrest prote 100.0 5.4E-28 1.8E-32 216.0 24.4 212 1-217 34-282 (342)
98 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.1E-27 1.4E-31 218.6 30.8 200 1-213 140-344 (445)
99 3sfz_A APAF-1, apoptotic pepti 100.0 8.2E-28 2.8E-32 249.9 28.8 216 12-228 608-912 (1249)
100 3odt_A Protein DOA1; ubiquitin 100.0 3.2E-27 1.1E-31 208.1 28.3 201 1-214 82-293 (313)
101 1yfq_A Cell cycle arrest prote 100.0 8E-28 2.7E-32 214.9 24.0 200 13-218 5-226 (342)
102 1pgu_A Actin interacting prote 100.0 2.5E-27 8.4E-32 228.2 28.8 206 2-215 41-281 (615)
103 2xyi_A Probable histone-bindin 100.0 1.3E-27 4.4E-32 221.2 25.7 201 13-217 122-353 (430)
104 3dw8_B Serine/threonine-protei 100.0 2.1E-27 7.2E-32 220.1 25.4 196 20-217 30-315 (447)
105 2oaj_A Protein SNI1; WD40 repe 100.0 2.5E-27 8.7E-32 237.6 27.6 198 16-218 14-243 (902)
106 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.4E-27 4.9E-32 222.1 23.7 200 1-206 126-374 (450)
107 4h5i_A Guanine nucleotide-exch 100.0 1.6E-27 5.6E-32 215.7 23.0 170 1-171 158-344 (365)
108 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2E-26 7E-31 213.9 31.0 209 1-219 180-393 (445)
109 2j04_A TAU60, YPL007P, hypothe 100.0 8.2E-28 2.8E-32 223.0 19.2 199 17-227 83-319 (588)
110 1p22_A F-BOX/WD-repeat protein 100.0 5.7E-27 1.9E-31 217.1 24.7 201 1-213 194-410 (435)
111 1pgu_A Actin interacting prote 100.0 9.3E-27 3.2E-31 224.2 24.4 201 2-213 144-362 (615)
112 4ggc_A P55CDC, cell division c 100.0 3.4E-26 1.2E-30 202.1 25.5 184 22-213 29-269 (318)
113 3f3f_A Nucleoporin SEH1; struc 99.9 3.8E-26 1.3E-30 203.5 24.4 171 1-171 34-338 (351)
114 1l0q_A Surface layer protein; 99.9 2.9E-25 9.8E-30 202.3 30.4 205 1-213 13-229 (391)
115 2oaj_A Protein SNI1; WD40 repe 99.9 4.7E-26 1.6E-30 228.5 26.7 202 1-207 40-297 (902)
116 3vu4_A KMHSV2; beta-propeller 99.9 8.9E-26 3E-30 203.5 25.2 206 1-214 82-333 (355)
117 4gga_A P55CDC, cell division c 99.9 2.1E-25 7.3E-30 205.6 27.2 237 22-267 109-392 (420)
118 2w18_A PALB2, fancn, partner a 99.9 6.7E-26 2.3E-30 198.1 22.3 166 1-168 158-355 (356)
119 3vu4_A KMHSV2; beta-propeller 99.9 1.2E-25 4.1E-30 202.7 24.6 205 4-217 3-271 (355)
120 3bws_A Protein LP49; two-domai 99.9 2.3E-25 7.9E-30 205.7 26.8 222 1-229 145-390 (433)
121 1l0q_A Surface layer protein; 99.9 1.4E-24 4.8E-29 197.7 31.1 209 1-217 55-275 (391)
122 2j04_A TAU60, YPL007P, hypothe 99.9 7.3E-25 2.5E-29 203.4 23.8 193 1-206 108-350 (588)
123 4gq1_A NUP37; propeller, trans 99.9 1.6E-25 5.5E-30 204.7 17.7 157 24-181 95-296 (393)
124 3bws_A Protein LP49; two-domai 99.9 1E-23 3.6E-28 194.6 29.8 206 1-214 192-429 (433)
125 4aow_A Guanine nucleotide-bind 99.9 4.2E-24 1.4E-28 190.5 25.2 169 1-171 151-338 (340)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 8.4E-24 2.9E-28 194.6 27.1 199 1-208 160-375 (415)
127 3mmy_A MRNA export factor; mRN 99.9 6.9E-24 2.4E-28 190.8 23.7 167 1-168 65-344 (368)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-22 2.3E-26 181.9 22.5 198 2-207 95-331 (415)
129 2ojh_A Uncharacterized protein 99.9 2E-21 6.9E-26 169.0 23.2 200 1-208 23-238 (297)
130 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-21 5.3E-26 180.3 20.5 196 21-217 95-333 (434)
131 3vgz_A Uncharacterized protein 99.9 2.5E-20 8.4E-25 166.9 27.8 207 2-215 71-301 (353)
132 3vgz_A Uncharacterized protein 99.9 1E-20 3.6E-25 169.4 24.7 202 1-208 112-335 (353)
133 1nir_A Nitrite reductase; hemo 99.9 5.4E-20 1.9E-24 174.6 29.4 214 1-217 160-402 (543)
134 3u4y_A Uncharacterized protein 99.9 3.6E-20 1.2E-24 164.6 25.5 208 1-215 21-250 (331)
135 1pby_B Quinohemoprotein amine 99.9 3.5E-20 1.2E-24 164.6 24.2 206 1-216 12-309 (337)
136 2oit_A Nucleoporin 214KDA; NH2 99.9 5.4E-21 1.9E-25 176.6 18.2 181 21-204 39-258 (434)
137 1ri6_A Putative isomerase YBHE 99.9 1.8E-19 6.1E-24 160.4 27.0 214 1-216 16-261 (343)
138 1jmx_B Amine dehydrogenase; ox 99.9 9.6E-20 3.3E-24 162.7 24.3 204 1-215 22-323 (349)
139 1ri6_A Putative isomerase YBHE 99.9 3.4E-19 1.2E-23 158.7 25.8 210 2-214 62-305 (343)
140 1nir_A Nitrite reductase; hemo 99.9 1.2E-19 4.1E-24 172.2 23.6 184 25-214 144-352 (543)
141 3u4y_A Uncharacterized protein 99.8 3.6E-19 1.2E-23 158.1 25.0 211 2-214 64-301 (331)
142 1xfd_A DIP, dipeptidyl aminope 99.8 6.7E-20 2.3E-24 180.2 22.1 202 1-208 38-329 (723)
143 2ecf_A Dipeptidyl peptidase IV 99.8 9.7E-20 3.3E-24 179.5 22.6 180 21-206 39-305 (741)
144 2ojh_A Uncharacterized protein 99.8 4.8E-20 1.6E-24 160.3 18.0 200 2-208 64-293 (297)
145 3hfq_A Uncharacterized protein 99.8 1.7E-18 6E-23 154.9 27.3 209 2-214 65-314 (347)
146 3hfq_A Uncharacterized protein 99.8 1.3E-18 4.3E-23 155.8 24.4 212 2-214 20-268 (347)
147 2z3z_A Dipeptidyl aminopeptida 99.8 2.3E-19 7.9E-24 175.9 20.1 201 1-207 102-376 (706)
148 2z3z_A Dipeptidyl aminopeptida 99.8 5E-19 1.7E-23 173.6 20.3 191 20-214 83-339 (706)
149 2ecf_A Dipeptidyl peptidase IV 99.8 7.2E-19 2.5E-23 173.3 20.7 208 1-215 130-411 (741)
150 1k32_A Tricorn protease; prote 99.8 1.8E-18 6E-23 176.8 22.5 202 2-213 267-498 (1045)
151 1z68_A Fibroblast activation p 99.8 4E-19 1.4E-23 174.6 17.0 205 1-214 37-341 (719)
152 1xfd_A DIP, dipeptidyl aminope 99.8 2.8E-18 9.4E-23 168.6 22.7 208 2-215 93-391 (723)
153 1pby_B Quinohemoprotein amine 99.8 1.8E-17 6E-22 147.1 23.0 172 2-179 58-318 (337)
154 1k32_A Tricorn protease; prote 99.8 2.6E-17 8.9E-22 168.2 24.9 207 2-219 360-639 (1045)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-17 1.4E-21 147.3 22.2 209 2-214 62-338 (365)
156 3o4h_A Acylamino-acid-releasin 99.8 4.3E-17 1.5E-21 156.3 22.8 184 8-209 100-304 (582)
157 3scy_A Hypothetical bacterial 99.8 4.9E-16 1.7E-20 139.8 28.3 209 2-214 77-334 (361)
158 3scy_A Hypothetical bacterial 99.8 4.6E-16 1.6E-20 139.9 27.7 210 2-215 29-289 (361)
159 1jmx_B Amine dehydrogenase; ox 99.8 8.6E-17 2.9E-21 143.5 21.4 148 22-171 3-176 (349)
160 3pe7_A Oligogalacturonate lyas 99.8 1.9E-16 6.7E-21 143.6 23.8 198 5-206 15-257 (388)
161 4a5s_A Dipeptidyl peptidase 4 99.7 1.4E-16 4.7E-21 157.1 22.1 208 1-214 37-348 (740)
162 1z68_A Fibroblast activation p 99.7 1.6E-17 5.3E-22 163.3 14.6 175 22-205 19-271 (719)
163 3o4h_A Acylamino-acid-releasin 99.7 1.2E-16 4E-21 153.3 20.2 180 21-209 24-217 (582)
164 1jof_A Carboxy-CIS,CIS-muconat 99.7 9.6E-16 3.3E-20 138.3 24.5 185 20-206 41-274 (365)
165 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-15 4.9E-20 135.2 24.7 209 2-214 71-319 (329)
166 1q7f_A NHL, brain tumor CG1071 99.7 1.9E-14 6.6E-19 125.0 28.4 204 2-213 53-276 (286)
167 4a5s_A Dipeptidyl peptidase 4 99.7 4.9E-16 1.7E-20 153.2 20.4 180 22-205 20-278 (740)
168 3no2_A Uncharacterized protein 99.7 7.3E-15 2.5E-19 127.2 24.8 199 1-205 16-231 (276)
169 2oiz_A Aromatic amine dehydrog 99.7 5.5E-15 1.9E-19 133.1 24.6 204 1-215 32-332 (361)
170 3azo_A Aminopeptidase; POP fam 99.7 1.3E-15 4.6E-20 148.1 21.1 205 2-215 104-365 (662)
171 3e5z_A Putative gluconolactona 99.7 2E-14 6.9E-19 125.6 25.7 197 2-209 52-279 (296)
172 2gop_A Trilobed protease; beta 99.7 8.1E-15 2.8E-19 130.9 23.3 191 2-213 45-288 (347)
173 3pe7_A Oligogalacturonate lyas 99.7 8.7E-15 3E-19 132.6 23.1 202 2-205 62-308 (388)
174 3dsm_A Uncharacterized protein 99.7 6.1E-14 2.1E-18 124.6 26.6 207 2-214 66-299 (328)
175 3azo_A Aminopeptidase; POP fam 99.6 5.9E-15 2E-19 143.5 19.5 207 3-214 50-320 (662)
176 2dg1_A DRP35, lactonase; beta 99.6 1.6E-13 5.6E-18 121.7 27.0 207 9-215 34-261 (333)
177 1q7f_A NHL, brain tumor CG1071 99.6 1.8E-13 6.1E-18 118.8 24.7 166 2-170 102-280 (286)
178 3c5m_A Oligogalacturonate lyas 99.6 1.4E-14 4.8E-19 131.4 18.1 196 2-206 62-302 (396)
179 3fvz_A Peptidyl-glycine alpha- 99.6 1.5E-13 5E-18 122.1 24.1 199 20-228 25-276 (329)
180 3c5m_A Oligogalacturonate lyas 99.6 4.5E-15 1.5E-19 134.7 14.3 200 4-207 14-258 (396)
181 1xip_A Nucleoporin NUP159; bet 99.6 1.8E-14 6.1E-19 129.4 17.2 173 21-204 40-231 (388)
182 2gop_A Trilobed protease; beta 99.6 1.8E-13 6.2E-18 122.0 23.6 194 2-215 87-329 (347)
183 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-13 4.8E-18 135.0 24.4 189 22-214 128-363 (710)
184 1rwi_B Serine/threonine-protei 99.6 2.1E-13 7E-18 117.2 21.9 205 2-213 48-260 (270)
185 3e5z_A Putative gluconolactona 99.6 2.4E-13 8.4E-18 118.7 22.7 198 9-215 17-244 (296)
186 1qks_A Cytochrome CD1 nitrite 99.6 2.4E-12 8.3E-17 122.1 29.9 214 1-217 178-421 (567)
187 3no2_A Uncharacterized protein 99.6 4.2E-13 1.4E-17 116.1 21.7 177 29-216 4-194 (276)
188 2bkl_A Prolyl endopeptidase; m 99.6 1.8E-13 6.1E-18 133.9 21.6 192 18-215 119-347 (695)
189 2dg1_A DRP35, lactonase; beta 99.6 1.9E-12 6.4E-17 114.8 25.9 204 2-208 68-301 (333)
190 3dsm_A Uncharacterized protein 99.6 1.2E-12 4E-17 116.3 24.2 204 2-215 19-251 (328)
191 2xdw_A Prolyl endopeptidase; a 99.6 7.5E-13 2.5E-17 129.9 25.0 210 2-217 153-414 (710)
192 2mad_H Methylamine dehydrogena 99.6 3.5E-12 1.2E-16 115.1 27.2 205 1-217 48-350 (373)
193 2oiz_A Aromatic amine dehydrog 99.6 3.4E-13 1.2E-17 121.4 20.3 190 2-199 83-360 (361)
194 3g4e_A Regucalcin; six bladed 99.5 8.4E-12 2.9E-16 109.1 26.5 195 2-206 37-261 (297)
195 1rwi_B Serine/threonine-protei 99.5 2E-12 7E-17 110.9 21.3 189 20-215 25-220 (270)
196 1qks_A Cytochrome CD1 nitrite 99.5 5.3E-12 1.8E-16 119.8 24.4 183 28-216 165-372 (567)
197 2z2n_A Virginiamycin B lyase; 99.5 5.4E-11 1.8E-15 103.3 28.6 205 2-215 38-253 (299)
198 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.3E-11 2.2E-15 103.8 28.4 204 2-214 48-296 (314)
199 3dr2_A Exported gluconolactona 99.5 1.9E-11 6.3E-16 107.3 23.6 199 2-212 69-302 (305)
200 3sjl_D Methylamine dehydrogena 99.5 1.4E-11 4.9E-16 110.2 23.1 97 2-99 61-177 (386)
201 2ghs_A AGR_C_1268P; regucalcin 99.5 1.3E-10 4.3E-15 103.0 28.9 194 2-206 73-291 (326)
202 3c75_H MADH, methylamine dehyd 99.5 1.9E-11 6.5E-16 111.3 23.4 211 1-218 100-403 (426)
203 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4E-16 122.0 22.6 187 22-215 166-391 (741)
204 2z2n_A Virginiamycin B lyase; 99.4 1.8E-10 6.1E-15 100.0 27.4 198 2-208 80-287 (299)
205 2bkl_A Prolyl endopeptidase; m 99.4 2.9E-12 9.8E-17 125.4 17.7 198 1-204 148-380 (695)
206 3hrp_A Uncharacterized protein 99.4 9.8E-11 3.4E-15 107.0 24.1 208 2-213 154-406 (409)
207 3hrp_A Uncharacterized protein 99.4 5.1E-10 1.7E-14 102.3 27.0 190 20-214 132-351 (409)
208 2qc5_A Streptogramin B lactona 99.4 1.2E-09 4.1E-14 94.8 27.9 205 2-215 43-258 (300)
209 1xip_A Nucleoporin NUP159; bet 99.4 4E-11 1.4E-15 107.7 18.5 124 19-153 88-225 (388)
210 1yr2_A Prolyl oligopeptidase; 99.4 8.3E-11 2.9E-15 115.9 22.3 196 2-203 191-423 (741)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 3.7E-10 1.3E-14 98.9 22.1 195 17-215 16-254 (314)
212 1mda_H Methylamine dehydrogena 99.3 1.3E-10 4.5E-15 104.0 19.3 205 2-217 48-346 (368)
213 3sjl_D Methylamine dehydrogena 99.3 4.5E-10 1.6E-14 100.5 22.7 191 24-218 38-257 (386)
214 2qc5_A Streptogramin B lactona 99.3 1.6E-09 5.6E-14 93.9 23.5 188 19-215 20-216 (300)
215 2iwa_A Glutamine cyclotransfer 99.3 1E-09 3.4E-14 93.2 20.3 198 9-211 9-231 (266)
216 3g4e_A Regucalcin; six bladed 99.3 3.9E-09 1.3E-13 92.0 24.9 193 16-215 9-227 (297)
217 2mad_H Methylamine dehydrogena 99.2 3.7E-09 1.3E-13 95.3 24.8 185 25-216 27-242 (373)
218 2ece_A 462AA long hypothetical 99.2 2.1E-09 7.3E-14 97.0 22.7 204 1-205 107-399 (462)
219 2hz6_A Endoplasmic reticulum t 99.2 2.1E-12 7.3E-17 116.5 3.3 178 29-217 8-192 (369)
220 2qe8_A Uncharacterized protein 99.2 3.2E-09 1.1E-13 94.6 23.1 183 20-206 68-310 (343)
221 3dr2_A Exported gluconolactona 99.2 1.7E-09 5.9E-14 94.6 20.9 183 12-202 37-254 (305)
222 2hz6_A Endoplasmic reticulum t 99.2 2E-12 7E-17 116.6 1.9 164 2-171 21-193 (369)
223 2ghs_A AGR_C_1268P; regucalcin 99.2 1.1E-08 3.9E-13 90.4 24.4 186 22-214 52-257 (326)
224 2qe8_A Uncharacterized protein 99.2 2.4E-09 8.3E-14 95.4 19.9 192 19-215 17-276 (343)
225 2ece_A 462AA long hypothetical 99.2 4.2E-09 1.4E-13 95.1 21.1 186 28-214 93-349 (462)
226 3nol_A Glutamine cyclotransfer 99.2 9.7E-09 3.3E-13 86.2 22.0 186 11-203 33-241 (262)
227 3iuj_A Prolyl endopeptidase; h 99.2 1.2E-09 4E-14 106.8 19.2 182 22-212 132-352 (693)
228 3iuj_A Prolyl endopeptidase; h 99.2 3.1E-09 1.1E-13 103.8 21.1 197 1-207 156-391 (693)
229 3c75_H MADH, methylamine dehyd 99.1 4.5E-09 1.6E-13 95.6 20.3 185 28-216 82-294 (426)
230 1yiq_A Quinohemoprotein alcoho 99.1 6.5E-09 2.2E-13 101.2 21.6 197 2-202 185-533 (689)
231 3mbr_X Glutamine cyclotransfer 99.1 1E-07 3.5E-12 79.3 24.4 184 11-201 11-218 (243)
232 1fwx_A Nitrous oxide reductase 99.1 4E-09 1.4E-13 98.5 17.5 202 2-206 114-407 (595)
233 1kb0_A Quinohemoprotein alcoho 99.1 9.5E-09 3.2E-13 99.8 20.9 198 2-203 192-536 (677)
234 3hxj_A Pyrrolo-quinoline quino 99.1 1.1E-08 3.7E-13 90.1 19.3 197 2-213 119-320 (330)
235 3nok_A Glutaminyl cyclase; bet 99.1 5.1E-08 1.8E-12 81.8 21.6 183 11-201 45-249 (268)
236 1kb0_A Quinohemoprotein alcoho 99.0 2.1E-08 7.2E-13 97.4 21.2 212 2-221 140-511 (677)
237 2iwa_A Glutamine cyclotransfer 99.0 4.9E-08 1.7E-12 82.8 19.5 166 2-171 46-238 (266)
238 3hxj_A Pyrrolo-quinoline quino 99.0 1.9E-08 6.4E-13 88.6 16.0 171 30-214 107-281 (330)
239 1mda_H Methylamine dehydrogena 99.0 1.5E-08 5E-13 90.7 14.8 186 1-196 97-366 (368)
240 3q7m_A Lipoprotein YFGL, BAMB; 98.9 4.8E-07 1.7E-11 81.3 24.9 201 2-218 65-297 (376)
241 3q7m_A Lipoprotein YFGL, BAMB; 98.9 2.5E-07 8.6E-12 83.2 23.0 207 2-218 115-338 (376)
242 1yiq_A Quinohemoprotein alcoho 98.9 7.5E-08 2.6E-12 93.7 20.7 212 2-219 133-507 (689)
243 1fwx_A Nitrous oxide reductase 98.9 2.3E-07 7.7E-12 86.8 19.7 187 28-216 99-360 (595)
244 1npe_A Nidogen, entactin; glyc 98.9 3.9E-06 1.3E-10 71.5 26.3 149 21-170 38-198 (267)
245 2fp8_A Strictosidine synthase; 98.8 3.4E-06 1.2E-10 74.1 26.1 186 20-212 81-308 (322)
246 3nol_A Glutamine cyclotransfer 98.8 3.6E-07 1.2E-11 76.7 18.3 154 2-159 67-244 (262)
247 1npe_A Nidogen, entactin; glyc 98.8 5.9E-06 2E-10 70.4 25.2 193 2-199 60-263 (267)
248 1kv9_A Type II quinohemoprotei 98.8 4.7E-07 1.6E-11 87.9 19.8 200 2-205 180-520 (668)
249 3mbr_X Glutamine cyclotransfer 98.8 2.2E-06 7.7E-11 71.2 20.4 153 2-159 45-223 (243)
250 2p4o_A Hypothetical protein; p 98.8 6E-06 2E-10 72.0 24.5 200 2-207 55-278 (306)
251 2xe4_A Oligopeptidase B; hydro 98.7 1.7E-06 5.7E-11 85.2 21.3 186 22-214 177-395 (751)
252 2ad6_A Methanol dehydrogenase 98.7 2E-06 6.7E-11 81.9 21.0 176 23-202 239-522 (571)
253 3nok_A Glutaminyl cyclase; bet 98.7 2E-06 6.8E-11 72.2 18.0 151 2-158 77-253 (268)
254 2fp8_A Strictosidine synthase; 98.7 8E-06 2.7E-10 71.7 22.7 180 19-206 19-248 (322)
255 3qqz_A Putative uncharacterize 98.6 3.8E-05 1.3E-09 64.6 25.1 193 14-210 21-246 (255)
256 1ijq_A LDL receptor, low-densi 98.6 0.00017 5.7E-09 63.1 30.5 209 2-215 12-236 (316)
257 2p4o_A Hypothetical protein; p 98.6 2.2E-05 7.5E-10 68.4 24.6 197 9-214 22-239 (306)
258 3v65_B Low-density lipoprotein 98.6 9.3E-05 3.2E-09 66.7 28.6 207 2-214 98-315 (386)
259 3v64_C Agrin; beta propeller, 98.6 0.00019 6.4E-09 63.8 30.1 207 2-214 55-272 (349)
260 1kv9_A Type II quinohemoprotei 98.6 5.4E-06 1.9E-10 80.4 20.7 212 2-219 129-490 (668)
261 1w6s_A Methanol dehydrogenase 98.5 1.6E-05 5.6E-10 75.7 21.5 174 23-200 245-529 (599)
262 2ad6_A Methanol dehydrogenase 98.5 2.1E-05 7.1E-10 74.8 22.1 136 2-140 127-342 (571)
263 1flg_A Protein (quinoprotein e 98.5 1.6E-05 5.4E-10 75.8 20.5 175 22-201 249-543 (582)
264 3qqz_A Putative uncharacterize 98.5 6.2E-05 2.1E-09 63.3 21.4 165 2-167 51-250 (255)
265 3p5b_L Low density lipoprotein 98.4 0.00098 3.4E-08 60.3 29.9 197 14-214 107-317 (400)
266 1w6s_A Methanol dehydrogenase 98.4 5.1E-05 1.8E-09 72.3 22.0 136 2-140 133-349 (599)
267 4a2l_A BT_4663, two-component 98.4 0.00027 9.4E-09 69.9 28.2 180 21-209 408-607 (795)
268 1flg_A Protein (quinoprotein e 98.3 0.00019 6.4E-09 68.3 24.0 138 2-140 129-362 (582)
269 3tc9_A Hypothetical hydrolase; 98.3 0.00033 1.1E-08 64.0 24.8 129 2-132 161-300 (430)
270 2p9w_A MAL S 1 allergenic prot 98.3 0.0008 2.7E-08 58.4 25.4 148 22-170 16-215 (334)
271 4hw6_A Hypothetical protein, I 98.3 0.00018 6.2E-09 65.8 22.4 208 2-213 164-429 (433)
272 4hw6_A Hypothetical protein, I 98.3 0.00013 4.6E-09 66.7 21.4 147 21-169 141-303 (433)
273 4a2l_A BT_4663, two-component 98.3 0.00077 2.6E-08 66.7 28.5 182 21-209 312-519 (795)
274 3v9f_A Two-component system se 98.3 0.00046 1.6E-08 68.2 25.9 183 21-210 409-605 (781)
275 3tc9_A Hypothetical hydrolase; 98.2 8.9E-05 3E-09 67.9 18.9 147 20-169 138-300 (430)
276 3sov_A LRP-6, low-density lipo 98.2 0.0022 7.6E-08 56.0 26.8 190 20-215 36-236 (318)
277 3amr_A 3-phytase; beta-propell 98.2 0.00078 2.7E-08 58.9 22.5 165 2-169 52-262 (355)
278 3m0c_C LDL receptor, low-densi 98.2 0.0047 1.6E-07 60.7 30.1 156 15-170 420-589 (791)
279 3v65_B Low-density lipoprotein 98.1 0.0015 5.1E-08 58.8 23.4 151 21-171 161-319 (386)
280 2xbg_A YCF48-like protein; pho 98.1 0.0038 1.3E-07 54.7 25.1 180 21-209 124-314 (327)
281 3v9f_A Two-component system se 98.1 0.0011 3.7E-08 65.5 23.9 181 21-209 365-560 (781)
282 3v64_C Agrin; beta propeller, 98.1 0.0018 6.2E-08 57.3 23.0 150 21-171 118-276 (349)
283 3p5b_L Low density lipoprotein 98.1 0.0062 2.1E-07 54.9 26.9 152 20-171 160-321 (400)
284 2p9w_A MAL S 1 allergenic prot 98.0 0.00053 1.8E-08 59.5 18.4 158 56-215 8-213 (334)
285 3amr_A 3-phytase; beta-propell 98.0 0.0018 6.1E-08 56.7 21.6 179 30-214 40-260 (355)
286 2xe4_A Oligopeptidase B; hydro 98.0 0.00015 5.2E-09 71.2 16.1 107 62-171 175-305 (751)
287 3kya_A Putative phosphatase; s 98.0 0.0064 2.2E-07 56.1 25.7 130 2-132 164-340 (496)
288 1n7d_A LDL receptor, low-densi 98.0 4.6E-05 1.6E-09 74.2 11.9 168 2-169 388-570 (699)
289 3sre_A PON1, serum paraoxonase 98.0 0.0028 9.6E-08 56.0 22.2 185 15-204 45-284 (355)
290 3sov_A LRP-6, low-density lipo 98.0 0.0051 1.7E-07 53.7 23.8 150 21-171 81-239 (318)
291 3kya_A Putative phosphatase; s 98.0 0.0038 1.3E-07 57.6 23.5 147 21-168 141-339 (496)
292 1ijq_A LDL receptor, low-densi 97.9 0.0084 2.9E-07 52.2 25.9 151 20-171 78-239 (316)
293 2ism_A Putative oxidoreductase 97.9 0.007 2.4E-07 53.6 24.2 140 17-159 29-221 (352)
294 1k3i_A Galactose oxidase precu 97.9 0.00022 7.7E-09 68.9 14.9 181 22-206 290-530 (656)
295 2xbg_A YCF48-like protein; pho 97.8 0.01 3.5E-07 51.9 23.8 179 22-206 83-269 (327)
296 3s94_A LRP-6, low-density lipo 97.7 0.024 8.2E-07 54.2 25.5 155 16-170 37-202 (619)
297 1k3i_A Galactose oxidase precu 97.7 0.0018 6.3E-08 62.5 17.8 114 22-136 189-326 (656)
298 3m0c_C LDL receptor, low-densi 97.6 0.026 9E-07 55.5 25.1 151 21-171 473-633 (791)
299 3pbp_A Nucleoporin NUP82; beta 97.6 0.011 3.8E-07 52.9 20.3 140 24-166 26-208 (452)
300 1tl2_A L10, protein (tachylect 97.6 0.0067 2.3E-07 49.2 16.8 166 30-204 4-199 (236)
301 4a0p_A LRP6, LRP-6, low-densit 97.6 0.055 1.9E-06 51.8 29.4 190 19-215 37-235 (628)
302 3pbp_A Nucleoporin NUP82; beta 97.5 0.013 4.3E-07 52.6 18.5 130 71-203 31-196 (452)
303 2ism_A Putative oxidoreductase 97.5 0.02 6.8E-07 50.6 20.1 100 55-157 25-151 (352)
304 3s25_A Hypothetical 7-bladed b 97.5 0.011 3.8E-07 51.0 17.9 163 23-206 57-242 (302)
305 3a9g_A Putative uncharacterize 97.4 0.058 2E-06 47.7 25.6 148 11-160 20-217 (354)
306 1n7d_A LDL receptor, low-densi 97.4 0.0004 1.4E-08 67.6 8.8 151 21-171 455-615 (699)
307 3a9g_A Putative uncharacterize 97.3 0.055 1.9E-06 47.8 20.9 145 55-206 23-217 (354)
308 1tl2_A L10, protein (tachylect 97.3 0.0054 1.8E-07 49.8 12.5 140 20-166 42-206 (236)
309 3das_A Putative oxidoreductase 97.2 0.062 2.1E-06 47.2 19.9 148 53-205 24-220 (347)
310 2vpj_A Kelch-like protein 12; 97.2 0.053 1.8E-06 46.4 19.4 140 28-171 61-232 (301)
311 3sre_A PON1, serum paraoxonase 97.2 0.032 1.1E-06 49.2 17.8 145 21-168 114-296 (355)
312 3das_A Putative oxidoreductase 97.2 0.062 2.1E-06 47.2 19.5 148 12-159 24-220 (347)
313 1cru_A Protein (soluble quinop 97.1 0.079 2.7E-06 48.5 20.7 102 55-156 21-159 (454)
314 1cru_A Protein (soluble quinop 97.1 0.058 2E-06 49.4 19.5 110 12-121 19-162 (454)
315 3ii7_A Kelch-like protein 7; p 97.1 0.076 2.6E-06 45.5 19.5 139 29-171 55-226 (306)
316 3s94_A LRP-6, low-density lipo 97.0 0.27 9.1E-06 47.0 25.1 150 20-170 350-510 (619)
317 3s25_A Hypothetical 7-bladed b 96.9 0.15 5.2E-06 43.8 19.2 162 23-205 108-280 (302)
318 2xn4_A Kelch-like protein 2; s 96.9 0.13 4.3E-06 44.0 18.8 139 29-171 61-230 (302)
319 2g8s_A Glucose/sorbosone dehyd 96.9 0.058 2E-06 47.6 16.8 96 61-158 18-147 (353)
320 1bpo_A Protein (clathrin); cla 96.9 0.24 8.3E-06 44.5 24.8 169 1-172 87-291 (494)
321 2xzh_A Clathrin heavy chain 1; 96.9 0.2 6.7E-06 43.3 23.2 169 1-172 88-292 (365)
322 3ei3_A DNA damage-binding prot 96.8 0.35 1.2E-05 49.7 24.0 210 2-217 809-1062(1158)
323 2g8s_A Glucose/sorbosone dehyd 96.8 0.043 1.5E-06 48.5 15.4 139 19-159 18-216 (353)
324 2be1_A Serine/threonine-protei 96.7 0.052 1.8E-06 47.5 15.0 111 31-141 11-138 (339)
325 1zgk_A Kelch-like ECH-associat 96.6 0.11 3.8E-06 44.6 16.2 165 2-171 41-241 (308)
326 2vpj_A Kelch-like protein 12; 96.5 0.16 5.4E-06 43.3 16.6 103 29-135 112-233 (301)
327 4a0p_A LRP6, LRP-6, low-densit 96.5 0.62 2.1E-05 44.5 26.9 190 20-216 341-548 (628)
328 2xn4_A Kelch-like protein 2; s 96.5 0.17 6E-06 43.1 16.7 103 29-135 108-231 (302)
329 1bpo_A Protein (clathrin); cla 96.4 0.49 1.7E-05 42.6 21.3 167 2-169 127-330 (494)
330 4asc_A Kelch repeat and BTB do 96.2 0.39 1.3E-05 41.2 17.4 143 25-171 41-222 (315)
331 3ott_A Two-component system se 96.2 1 3.6E-05 43.9 26.2 177 21-208 148-344 (758)
332 3ott_A Two-component system se 96.0 1.3 4.5E-05 43.2 25.2 182 21-211 375-581 (758)
333 3ii7_A Kelch-like protein 7; p 95.9 0.42 1.4E-05 40.8 16.2 139 29-171 101-273 (306)
334 3ei3_A DNA damage-binding prot 95.8 2 7E-05 44.1 25.9 185 18-207 553-757 (1158)
335 4asc_A Kelch repeat and BTB do 95.8 0.42 1.4E-05 41.0 15.6 103 29-135 98-223 (315)
336 1zgk_A Kelch-like ECH-associat 95.5 0.48 1.7E-05 40.5 14.9 103 29-135 121-242 (308)
337 2woz_A Kelch repeat and BTB do 95.4 1.1 3.8E-05 38.4 19.2 142 26-171 53-232 (318)
338 2zwa_A Leucine carboxyl methyl 95.4 0.74 2.5E-05 44.6 17.2 113 22-135 443-579 (695)
339 1xi4_A Clathrin heavy chain; a 95.4 0.47 1.6E-05 49.2 15.8 168 2-172 88-291 (1630)
340 2uvk_A YJHT; unknown function, 95.3 0.67 2.3E-05 40.5 15.4 52 29-81 65-128 (357)
341 2woz_A Kelch repeat and BTB do 95.1 0.91 3.1E-05 38.9 15.5 104 29-135 109-233 (318)
342 3sbq_A Nitrous-oxide reductase 95.1 2.1 7.2E-05 39.8 19.3 67 104-170 324-408 (638)
343 2xzh_A Clathrin heavy chain 1; 94.9 1.7 5.8E-05 37.6 26.0 191 23-219 71-292 (365)
344 2uvk_A YJHT; unknown function, 94.2 1.4 4.6E-05 38.5 14.6 49 40-89 168-224 (357)
345 3qhy_B Beta-lactamase inhibito 94.2 2.2 7.6E-05 36.0 15.7 125 39-170 80-207 (282)
346 1xi4_A Clathrin heavy chain; a 93.8 2.6 9E-05 43.9 16.8 189 24-218 71-290 (1630)
347 3sbq_A Nitrous-oxide reductase 93.8 0.26 8.7E-06 45.8 8.8 110 11-122 315-454 (638)
348 4gq2_M Nucleoporin NUP120; bet 93.2 7.3 0.00025 39.2 19.1 37 104-140 237-273 (950)
349 2be1_A Serine/threonine-protei 92.3 0.21 7.2E-06 43.6 5.9 99 73-171 11-131 (339)
350 2wg3_C Hedgehog-interacting pr 92.1 2.8 9.7E-05 38.2 13.5 104 19-122 14-158 (463)
351 4hvt_A Ritya.17583.B, post-pro 92.0 9.4 0.00032 36.9 17.6 189 22-214 132-376 (711)
352 2wg3_C Hedgehog-interacting pr 91.3 6.3 0.00022 35.9 14.8 54 60-113 13-79 (463)
353 2zwa_A Leucine carboxyl methyl 89.5 8.5 0.00029 37.1 14.8 72 22-93 493-579 (695)
354 4gq2_M Nucleoporin NUP120; bet 88.8 19 0.00064 36.2 17.0 38 62-99 237-274 (950)
355 3qhy_B Beta-lactamase inhibito 83.5 19 0.00064 30.2 16.1 141 20-170 25-168 (282)
356 4fhn_B Nucleoporin NUP120; pro 80.2 16 0.00053 37.6 12.2 37 104-140 239-275 (1139)
357 3q6k_A 43.2 kDa salivary prote 79.4 32 0.0011 30.3 20.9 159 41-202 124-339 (381)
358 4a9v_A PHOX; hydrolase, beta-p 77.1 14 0.00048 34.5 9.6 61 61-121 476-549 (592)
359 3zwu_A Alkaline phosphatase PH 76.4 11 0.00037 35.6 8.9 58 63-120 478-548 (592)
360 4a9v_A PHOX; hydrolase, beta-p 74.8 18 0.0006 33.9 9.6 59 20-78 477-548 (592)
361 3zwu_A Alkaline phosphatase PH 74.0 14 0.00049 34.7 9.0 58 21-78 478-548 (592)
362 4fhn_B Nucleoporin NUP120; pro 71.6 17 0.00058 37.3 9.8 38 62-99 239-276 (1139)
363 3elq_A Arylsulfate sulfotransf 69.9 72 0.0025 29.8 18.9 74 2-78 177-266 (571)
364 3f7f_A Nucleoporin NUP120; nuc 64.9 11 0.00039 36.2 6.3 34 105-140 224-257 (729)
365 3l6v_A GYRA, DNA gyrase subuni 61.7 83 0.0028 27.5 20.2 139 27-167 4-177 (370)
366 3b7f_A Glycosyl hydrolase, BNR 58.5 92 0.0031 27.1 22.4 173 31-208 23-254 (394)
367 3uc1_A DNA gyrase subunit A; D 57.0 93 0.0032 26.6 18.2 137 29-167 108-276 (327)
368 3b7f_A Glycosyl hydrolase, BNR 55.0 1.1E+02 0.0036 26.7 21.9 104 62-167 116-259 (394)
369 3f7f_A Nucleoporin NUP120; nuc 54.9 20 0.00068 34.5 6.0 31 28-58 229-259 (729)
370 3elq_A Arylsulfate sulfotransf 50.4 1.6E+02 0.0055 27.4 13.4 55 2-57 228-300 (571)
371 2zux_A YESW protein; beta-prop 48.3 1.7E+02 0.006 27.2 14.2 137 1-152 230-424 (591)
372 3mez_B Mannose-specific lectin 48.0 68 0.0023 22.4 10.9 22 145-167 59-81 (113)
373 1suu_A DNA gyrase subunit A; t 45.4 1.4E+02 0.0048 25.2 22.2 185 27-213 5-227 (312)
374 1zi0_A DNA gyrase subunit A; b 43.7 1.5E+02 0.005 25.0 21.1 183 28-213 1-222 (307)
375 3mez_B Mannose-specific lectin 41.5 87 0.003 21.8 10.3 60 30-91 24-84 (113)
376 1wp5_A Topoisomerase IV; broke 40.1 1.7E+02 0.0059 24.8 20.6 186 28-213 3-221 (323)
377 3no0_A DNA gyrase subunit A; D 38.2 1.7E+02 0.0058 24.2 18.1 137 29-167 79-243 (276)
378 3a0c_A Mannose/sialic acid-bin 36.7 1E+02 0.0035 21.2 10.3 44 65-118 54-97 (110)
379 3c12_A FLGD, flagellar protein 34.5 54 0.0018 23.9 4.5 27 2-28 43-72 (138)
380 2lta_A De novo designed protei 39.7 8.9 0.0003 24.8 0.0 23 333-358 87-109 (110)
381 2l8s_A Integrin alpha-1; trans 31.6 15 0.00053 22.0 0.8 11 348-358 43-53 (54)
382 3mvd_K Regulator of chromosome 29.2 2.9E+02 0.0099 24.1 18.5 140 24-166 182-370 (423)
383 1b2p_A Protein (lectin); manno 27.3 1.6E+02 0.0055 20.6 11.3 13 106-118 95-107 (119)
384 3ox7_P MH027; urokinase-type p 27.0 15 0.00052 16.8 0.2 7 349-355 10-16 (23)
385 3osv_A Flagellar basal-BODY RO 26.9 91 0.0031 22.7 4.6 27 2-28 41-70 (138)
386 3no0_A DNA gyrase subunit A; D 26.6 2.7E+02 0.0092 22.9 19.4 155 12-168 13-194 (276)
387 2lq3_A Uncharacterized protein 26.3 19 0.00065 25.8 0.7 15 344-358 115-129 (130)
388 1q47_A Semaphorin 3A; beta pro 26.2 2.2E+02 0.0076 25.9 8.0 55 74-128 423-487 (495)
389 2v2f_A Penicillin binding prot 24.3 51 0.0017 15.9 1.9 13 3-15 8-20 (26)
390 3al9_A Plexin-A2; beta-propell 23.5 1.7E+02 0.0058 27.0 6.8 8 146-153 455-462 (539)
391 3al9_A Plexin-A2; beta-propell 23.5 1.3E+02 0.0044 27.9 5.9 69 144-214 402-478 (539)
392 3a0c_A Mannose/sialic acid-bin 22.9 1.9E+02 0.0064 19.8 11.7 13 190-202 85-97 (110)
393 4gz8_A Semaphorin-3A; multi-do 22.9 2.7E+02 0.0092 26.6 8.1 56 73-128 430-495 (667)
394 1sqj_A OXG-RCBH, oligoxylogluc 22.0 5.5E+02 0.019 24.9 18.7 139 20-160 16-190 (789)
395 3q6k_A 43.2 kDa salivary prote 20.4 4.3E+02 0.015 23.0 24.3 130 2-133 125-306 (381)
396 3kci_A Probable E3 ubiquitin-p 20.3 4.2E+02 0.014 22.8 18.1 143 24-166 162-341 (389)
397 1q47_A Semaphorin 3A; beta pro 20.2 3.1E+02 0.011 24.9 7.7 56 31-86 422-487 (495)
398 3mez_A Mannose-specific lectin 20.1 2.2E+02 0.0075 19.5 8.0 13 65-77 53-65 (111)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-37 Score=284.45 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=194.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||| .+|..+.++.+|.+. ++++|+|++.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.+|++|
T Consensus 131 ~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~ 210 (410)
T 1vyh_C 131 TIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSA 210 (410)
T ss_dssp CEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEE
T ss_pred eEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 589999 889999999999986 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC---
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK--- 152 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~--- 152 (359)
+.|++|++||+.++.++..+.+|...|.++.|+|++.+|++|+.|++|++||++++.+...+ ...|.+++|+|+
T Consensus 211 s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 290 (410)
T 1vyh_C 211 SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSY 290 (410)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGG
T ss_pred eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999888777 456899999995
Q ss_pred -----------------c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 153 -----------------G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 -----------------g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
| +++++.|+.|++||+.++ ..+..+.+|.. .|++++|+|++.+|++|+.||.+++|
T Consensus 291 ~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~----~v~~v~~~~~g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 291 SSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDN----WVRGVLFHSGGKFILSCADDKTLRVW 365 (410)
T ss_dssp GGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSCEEEEETTTEEEEE
T ss_pred cchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCC----cEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 5 778889999999998776 56677777765 89999999999999999999888887
Q ss_pred EcC
Q 041916 214 VPG 216 (359)
Q Consensus 214 ~~~ 216 (359)
...
T Consensus 366 d~~ 368 (410)
T 1vyh_C 366 DYK 368 (410)
T ss_dssp CCT
T ss_pred ECC
Confidence 653
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-36 Score=268.61 Aligned_cols=209 Identities=16% Similarity=0.205 Sum_probs=192.5
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||| .++..+..+..|... .+++|+|++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++.+|++|
T Consensus 103 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 103 HIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 489999 889999999988876 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-- 153 (359)
+.||.|++||+.+++.+..+.+|..+|++++|+|++.+|++++.|++|++||++++.++..+ ...|.+++|+|++
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 262 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999888777 3568999999999
Q ss_pred eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++++.|+.|++||+.++ ..+..+..|.. .|.+++|+|++.+|++++.||.+.+|.
T Consensus 263 l~s~s~D~~v~iwd~~~~-~~~~~~~~h~~----~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 263 FVSSSSDKSVKVWDVGTR-TCVHTFFDHQD----QVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECCCSS----CEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEEeCCCcEEEEeCCCC-EEEEEEcCCCC----cEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 888899999999998766 66677777765 899999999999999988888777765
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.6e-36 Score=266.63 Aligned_cols=213 Identities=17% Similarity=0.231 Sum_probs=191.6
Q ss_pred CeEEEe-CCCcE--EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTE--LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~--~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|+||+ .++.. ...+.+|... .+++|+|++.++++++.|++|++||+.+++.+..+..|...+.+++|+|++.+|+
T Consensus 59 ~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 138 (321)
T 3ow8_A 59 LVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA 138 (321)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEE
T ss_pred CEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEE
Confidence 589999 55543 4578899886 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCc
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG 153 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g 153 (359)
+|+.||.|.+||+.++.....+..|...|.+++|+|+|++|++|+.|+.|++||+++++++..+. .+|.+++|+|++
T Consensus 139 ~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~ 218 (321)
T 3ow8_A 139 TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218 (321)
T ss_dssp EECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred EEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988883 478999999999
Q ss_pred --eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 154 --LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 154 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+++++.|+.|++||+.++ .....+.+|.. .|.+++|+|++.+|++|+.||.+.+|....+
T Consensus 219 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~----~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~ 280 (321)
T 3ow8_A 219 QLLVTASDDGYIKIYDVQHA-NLAGTLSGHAS----WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280 (321)
T ss_dssp CEEEEECTTSCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CEEEEEcCCCeEEEEECCCc-ceeEEEcCCCC----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Confidence 777788999999998765 56666777765 8999999999999999999998888775543
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.5e-36 Score=263.12 Aligned_cols=212 Identities=17% Similarity=0.189 Sum_probs=188.4
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||| .++.++..+..|... .+++|+|++++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.+|++|
T Consensus 36 ~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 115 (304)
T 2ynn_A 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115 (304)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred cEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEE
Confidence 489999 889999999999887 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCc-ceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcC-
Q 041916 79 HSGGTVTMWKPTTAA-PLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQ- 151 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~-~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~- 151 (359)
+.||+|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.|++|++||+++..+...+ ...+..++|+|
T Consensus 116 s~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (304)
T 2ynn_A 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195 (304)
T ss_dssp ETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS
T ss_pred CCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc
Confidence 999999999998774 4567889999999999999 6889999999999999999887765554 34678889987
Q ss_pred -Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 152 -KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 152 -~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
++ +++++.|+.|++||+.++ ..+..+.+|.. .|.+++|+|++.+|++|+.||.+++|....
T Consensus 196 ~~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~----~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 196 PDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp TTCCEEEEEETTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCC----CEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 55 788889999999998766 66777788865 899999999999999988888777776543
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=266.16 Aligned_cols=208 Identities=13% Similarity=0.183 Sum_probs=173.2
Q ss_pred CeEEEe-CCCcEEE----EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-C
Q 041916 1 YPYIYN-RDGTELH----CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-G 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~----~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~ 73 (359)
+|+||| .+++.+. .+.+|.+. ++++|+|++.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++ .
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 489999 7776443 34578886 999999999999999999999999999999999999999999999999988 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL 147 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~ 147 (359)
+|++|+.||+|++||++++++...+. .|...+++++|+| ++.+|++|+.|++|++||+++++++..+ ...|.++
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 88999999999999999999888764 4556799999999 5678999999999999999999988887 4578999
Q ss_pred EEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEE
Q 041916 148 DFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILV 214 (359)
Q Consensus 148 ~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~ 214 (359)
+|+|+| +++++.|++|+|||+.++ + +..+.+|.. .|++++|+|++. +|++|+.||.+.+|.
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~-~-~~~~~~H~~----~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLS-E-LFRSQAHRD----FVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCC-E-EEEECCCSS----CEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCC-c-EEEEcCCCC----CEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 999997 567889999999997665 3 344566655 899999999986 455666665544443
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.4e-35 Score=271.36 Aligned_cols=209 Identities=14% Similarity=0.207 Sum_probs=192.4
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||| .++.++.++.+|... .+++|+|++.+|++|+.|++|++||+.++.++..+.+|...|.+++|+|++.+|++|
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~ 252 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence 478999 888999999999986 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC--------------------CCEEEEEeCCCeEEEEEcCCceeeE
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN--------------------GHLMATSGKECKIKIWDLRKYEVLQ 138 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~--------------------~~~l~~~~~d~~i~iwd~~~~~~~~ 138 (359)
+.||+|++||+.++.+...+.+|...|.+++|+|+ |.+|++|+.|++|++||++++.++.
T Consensus 253 s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~ 332 (410)
T 1vyh_C 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 332 (410)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 99999999999999999999999999999999996 6789999999999999999999888
Q ss_pred ec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 139 TL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 139 ~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.+ .+.|.+++|+|+| +++++.|+.|++||+.++ ..+..+.+|.. .|++++|+|++.+|++|+.||.+.+|
T Consensus 333 ~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~----~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 333 TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSS----CEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred EEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCC----cEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 87 4568999999999 888899999999998665 66777777765 89999999999999998888877776
Q ss_pred E
Q 041916 214 V 214 (359)
Q Consensus 214 ~ 214 (359)
.
T Consensus 408 ~ 408 (410)
T 1vyh_C 408 E 408 (410)
T ss_dssp C
T ss_pred e
Confidence 4
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-35 Score=260.61 Aligned_cols=217 Identities=11% Similarity=0.176 Sum_probs=188.0
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
...+|.+|.+. ++++|+|++.+|++|+.||+|++||+.++..+..+..|..+|.+++|+|++++|++|+.|++|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45788999886 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcCC-c--eEEEEcCCc
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQK-G--LLAVGTGSF 162 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~~-g--l~~~~~d~~ 162 (359)
.+++.+..+.+|.+.|++++|+|++.+|++|+.|++|++||++++ .+...+ ...|.+++|+|. + +++++.|+.
T Consensus 85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (304)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence 999999999999999999999999999999999999999999987 444444 457899999994 4 788889999
Q ss_pred EEEEcCCCCCCccceeecccCCCCcceEEEEEee--CCCEEEEEcCCCeEEE----------------------------
Q 041916 163 VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSSI---------------------------- 212 (359)
Q Consensus 163 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~~~i---------------------------- 212 (359)
|++||+............|. ..+..+.|+| ++.+|++|+.||.+++
T Consensus 165 v~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~ 240 (304)
T 2ynn_A 165 VKVWSLGQSTPNFTLTTGQE----RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (304)
T ss_dssp EEEEETTCSSCSEEEECCCT----TCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred EEEEECCCCCccceeccCCc----CcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCC
Confidence 99999876633333333332 3788999987 6789999999997766
Q ss_pred --EEcCCCCCccccccCCCcc
Q 041916 213 --LVPGSGEPNFDSWVANPFE 231 (359)
Q Consensus 213 --~~~~~~d~~~~~~~~~~~~ 231 (359)
+++++.|+.+++|+.....
T Consensus 241 ~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 241 PIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp SEEEEEETTSCEEEEETTTCC
T ss_pred CEEEEEcCCCeEEEEECCCCc
Confidence 4667788899999876543
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.1e-35 Score=262.53 Aligned_cols=213 Identities=15% Similarity=0.170 Sum_probs=187.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCCCE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
+|+||| .++..+..+..|... .+++|+|++.+|++|+.|+.|++||+.++ .....+.+|.+.|.++.|+|++.
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~- 156 (340)
T 1got_B 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ- 156 (340)
T ss_dssp EEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-
T ss_pred cEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-
Confidence 489999 889999999999886 99999999999999999999999999875 45677889999999999998865
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcC
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQ 151 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~ 151 (359)
+++++.||+|++||+.++.++..+.+|.+.|.+++|+|++.+|++|+.|++|++||++++.++..+ ...|.+++|+|
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence 889999999999999999999999999999999999999999999999999999999999888887 45789999999
Q ss_pred Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 152 KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 152 ~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
++ +++++.|+.|++||+..+ .....+. |.. ....|++++|+|++.+|++|+.||.+.+|....
T Consensus 237 ~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~-~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 237 NGNAFATGSDDATCRLFDLRAD-QELMTYS-HDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp TSSEEEEEETTSCEEEEETTTT-EEEEEEC-CTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCCEEEEEcCCCcEEEEECCCC-cEEEEEc-cCC-cccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 99 788889999999998765 3333332 221 233699999999999999999999888887544
No 9
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-34 Score=260.32 Aligned_cols=206 Identities=18% Similarity=0.257 Sum_probs=185.3
Q ss_pred eEEEe-CCC----cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDG----TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g----~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|++|+ .++ .....+.+|.+. .++.|++++. |++++.|++|++||+.+++++..+.+|.+.|.+++|+|++.+|
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 78999 443 356778899887 9999999875 8889999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCceeEEEc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAKTLDFS 150 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s 150 (359)
++|+.||.|++||++++.++..+.+|...|++++|+|++++|++|+.|++|++||++++..+..+. ..|.+++|+
T Consensus 200 ~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s 279 (340)
T 1got_B 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp EEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999988877662 358999999
Q ss_pred CCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 151 QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 151 ~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
|+| +++++.|+.|++||+.++ .....+.+|.. +|.+++|+|++.+|++|+.||.+.+|
T Consensus 280 ~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 280 KSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred CCCCEEEEECCCCeEEEEEcccC-cEeeEeecCCC----cEEEEEEcCCCCEEEEEcCCccEEec
Confidence 999 777888999999997765 56677777765 89999999999999999998877776
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-35 Score=265.02 Aligned_cols=193 Identities=13% Similarity=0.127 Sum_probs=166.1
Q ss_pred CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE----EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916 18 HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN----FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA 93 (359)
Q Consensus 18 h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~ 93 (359)
...+++++|+|++ .|++|+.||+|+|||+.+++.+.. ..+|.+.|++++|+|++.+|++|+.||+|++||+.+++
T Consensus 82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 3456999999985 678999999999999999875443 44899999999999999999999999999999999999
Q ss_pred ceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcCCc---eEEEEcCCcEE
Q 041916 94 PLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKG---LLAVGTGSFVQ 164 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~g---l~~~~~d~~i~ 164 (359)
++..+.+|.+.|++++|+|++ .+|++++.|++|++||+++++++..+ ...+.+++|+|++ +++++.|+.|+
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 999999999999999999987 47899999999999999999888776 2357899999976 55677899999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEEEcC
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~~~~ 216 (359)
+||+.++ ..+..+.+|.. .|++++|+|++ .+|++|+.||.+++|...
T Consensus 241 ~wd~~~~-~~~~~~~~h~~----~v~~v~fsp~g~~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 241 LVDTKST-SCVLSSAVHSQ----CVTGLVFSPHSVPFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp EEESCC---CCEEEECCSS----CEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred EEECCCC-cEEEEEcCCCC----CEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence 9998776 67777888865 89999999998 578888888877777543
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=262.09 Aligned_cols=201 Identities=15% Similarity=0.192 Sum_probs=172.5
Q ss_pred cEEEEeccCCC-e-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEE---EEecCCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916 10 TELHCLKEHGA-V-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG---NFRTGLGRTDVMRVNPFNGVVSLGHSGGTV 84 (359)
Q Consensus 10 ~~~~~l~~h~~-~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v 84 (359)
.++.++.+|.. . .+++|+|+|.+||+|+.|++|+|||+.++.... ...+|...|.+++|+|++.+|++|+.|++|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 46788999986 4 999999999999999999999999998876432 235799999999999999999999999999
Q ss_pred EEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---eeEec---cCCceeEEEcCCc--e
Q 041916 85 TMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---VLQTL---PGHAKTLDFSQKG--L 154 (359)
Q Consensus 85 ~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~---~~~i~~~~~s~~g--l 154 (359)
++||+.++. ++..+.+|.+.|++++|+|++++|++|+.|++|++||++++. ++..+ ...|.+++|+|++ +
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 999988764 567788999999999999999999999999999999998753 34444 4568999999999 7
Q ss_pred EEEEcCCcEEEEcCCCCC-CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 155 LAVGTGSFVQILGDFSGS-HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++++.|+.|++||...+. .....+.+|.. .|++++|+|++.+|++|+.||.+++|.
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHES----TVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCC----ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 888899999999976542 12345666655 899999999999999999999998874
No 12
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.2e-34 Score=257.98 Aligned_cols=194 Identities=16% Similarity=0.253 Sum_probs=173.9
Q ss_pred eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEeCCC
Q 041916 15 LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 15 l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd~~~ 91 (359)
+..|... .+++|+|++..|++++.|++|++||+.+++++..+.+|...|.+++|+| ++.+|++|+.||.|++||+++
T Consensus 150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 3456665 8899999999999999999999999999999999999999999999988 468999999999999999999
Q ss_pred CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----CCceeEEEcCCc--eEEEEcCCcEE
Q 041916 92 AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQKG--LLAVGTGSFVQ 164 (359)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~g--l~~~~~d~~i~ 164 (359)
++++..+.+|...|++++|+|++.+|++++.|++|++||++++..+..+. ..+.+++|+|+| +++++.|+.|+
T Consensus 230 ~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~ 309 (354)
T 2pbi_B 230 GQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTIN 309 (354)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEE
Confidence 99999999999999999999999999999999999999999988776662 257899999999 67778899999
Q ss_pred EEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 165 ILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 165 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+||+.++ ..+..+.+|.. .|++++|+|++.+|++|+.||.+.+|
T Consensus 310 vwd~~~~-~~~~~l~~h~~----~v~~l~~spdg~~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 310 VWDVLKG-SRVSILFGHEN----RVSTLRVSPDGTAFCSGSWDHTLRVW 353 (354)
T ss_dssp EEETTTC-SEEEEECCCSS----CEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred EEECCCC-ceEEEEECCCC----cEEEEEECCCCCEEEEEcCCCCEEec
Confidence 9998766 55666777765 89999999999999999999988776
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7e-34 Score=251.74 Aligned_cols=218 Identities=16% Similarity=0.213 Sum_probs=191.7
Q ss_pred CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916 9 GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 9 g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lw 87 (359)
.....++.+|... ++++|+|++.+|++|+.||.|++||+.+++....+.+|...|.+++|+|++.+|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 4457788999887 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCc
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSF 162 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~ 162 (359)
|+.+++++..+.+|...|.+++|+|++++|++++.|+.|++||+++++++..+ ..++.+++|+|++ +++++.|+.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999888877 3578999999999 778889999
Q ss_pred EEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE------------------------------
Q 041916 163 VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI------------------------------ 212 (359)
Q Consensus 163 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i------------------------------ 212 (359)
|++||+.++ .....+..+ +..++..++|+|++.+|++++.||.+.+
T Consensus 173 i~~wd~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
T 4ery_A 173 CRIWDTASG-QCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248 (312)
T ss_dssp EEEEETTTC-CEEEEECCS---SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSS
T ss_pred EEEEECCCC-ceeeEEecc---CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCC
Confidence 999998776 333333322 2347999999999999999999996655
Q ss_pred ---EEcCCCCCccccccCCCc
Q 041916 213 ---LVPGSGEPNFDSWVANPF 230 (359)
Q Consensus 213 ---~~~~~~d~~~~~~~~~~~ 230 (359)
+++++.|+.+++|++...
T Consensus 249 ~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 249 GKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp SCEEEECCTTSCEEEEETTTC
T ss_pred CcEEEEECCCCEEEEEECCCc
Confidence 355667788888887543
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7e-34 Score=252.85 Aligned_cols=201 Identities=17% Similarity=0.265 Sum_probs=176.7
Q ss_pred CeEEEe-CC-----CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RD-----GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~-----g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
+|++|+ .. +..+..+.+|... .+++|+|++.+|++|+.|++|++||+.+++++..+.+|...|.+++|+|++.
T Consensus 41 ~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 120 (319)
T 3frx_A 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120 (319)
T ss_dssp EEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSC
T ss_pred cEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC
Confidence 478998 22 3457889999987 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC------CCEEEEEeCCCeEEEEEcCCceeeEec---cCCc
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN------GHLMATSGKECKIKIWDLRKYEVLQTL---PGHA 144 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i 144 (359)
+|++|+.||+|++||++ +.++..+.+|...|.++.|+|. +.+|++++.|+.|++||+++++....+ ...|
T Consensus 121 ~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v 199 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199 (319)
T ss_dssp EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCE
T ss_pred EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcE
Confidence 99999999999999996 5677888899999999999984 458999999999999999999887777 4578
Q ss_pred eeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 145 KTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
.+++|+|+| +++++.|+.|++||+.++ ..+..+..+. .|.+++|+|++.+|++++.++
T Consensus 200 ~~~~~sp~g~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~-----~v~~~~~sp~~~~la~~~~~~ 259 (319)
T 3frx_A 200 NTLTASPDGTLIASAGKDGEIMLWNLAAK-KAMYTLSAQD-----EVFSLAFSPNRYWLAAATATG 259 (319)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTT-EEEEEEECCS-----CEEEEEECSSSSEEEEEETTE
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEecCCC-----cEEEEEEcCCCCEEEEEcCCC
Confidence 999999999 778889999999998765 4455554432 799999999999998887665
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-33 Score=248.94 Aligned_cols=217 Identities=22% Similarity=0.267 Sum_probs=190.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||+ .++.....+.+|... .+++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++.+|++|
T Consensus 46 ~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 125 (312)
T 4ery_A 46 LIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSG 125 (312)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred eEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 489999 889999999999886 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc-
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG- 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g- 153 (359)
+.||.|++||+++++.+..+..|..+|.+++|+|++.+|++++.|+.|++||+++++++..+ ...+..++|+|++
T Consensus 126 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (312)
T 4ery_A 126 SFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS
T ss_pred eCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999887766 3468899999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+++++.|+.|++||+.++ .....+..|.. ....+......+++.+|++|+.||.+.+|......
T Consensus 206 ~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 206 YILAATLDNTLKLWDYSKG-KCLKTYTGHKN-EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp EEEEEETTTEEEEEETTTT-EEEEEECSSCC-SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred EEEEEcCCCeEEEEECCCC-cEEEEEEecCC-ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 778889999999998766 55666666643 22223333344678999999999999999865543
No 16
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-33 Score=257.82 Aligned_cols=213 Identities=17% Similarity=0.224 Sum_probs=181.7
Q ss_pred CeEEEe-CCCcEEEEeccCCC-------------------eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGA-------------------VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL 60 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~-------------------~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 60 (359)
+++||+ .+|..+..+..|.. +++++|+|++.+|++|+.|+.|++||+.+++.+..+.+|.
T Consensus 86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~ 165 (393)
T 1erj_A 86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE 165 (393)
T ss_dssp CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCC
Confidence 478999 88998888876531 5899999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 61 GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
..|.+++|+|++.+|++|+.||+|++||+++++....+. +...+.+++|+| ++.+|++|+.|+.|++||++++..+..
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~ 244 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEe
Confidence 999999999999999999999999999999998777765 567899999999 899999999999999999999887665
Q ss_pred c----------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC-----------CccceeecccCCCCcceEEEEEee
Q 041916 140 L----------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS-----------HNYSRYMGHSMVKGYQIGKVSFRP 196 (359)
Q Consensus 140 ~----------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~p 196 (359)
+ ...|.+++|+|+| +++++.|+.|++||+.+.. .....+.+|.. .|.+++|+|
T Consensus 245 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~ 320 (393)
T 1erj_A 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD----FVLSVATTQ 320 (393)
T ss_dssp EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS----CEEEEEECG
T ss_pred ecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC----cEEEEEECC
Confidence 5 2468999999999 7788899999999986532 12334556654 899999999
Q ss_pred CCCEEEEEcCCCeEEEEEcCCC
Q 041916 197 YEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 197 ~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
++.+|++|+.||.+.+|....+
T Consensus 321 ~~~~l~sgs~D~~v~iwd~~~~ 342 (393)
T 1erj_A 321 NDEYILSGSKDRGVLFWDKKSG 342 (393)
T ss_dssp GGCEEEEEETTSEEEEEETTTC
T ss_pred CCCEEEEEeCCCeEEEEECCCC
Confidence 9999999999998888765443
No 17
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.6e-34 Score=256.60 Aligned_cols=209 Identities=11% Similarity=0.148 Sum_probs=172.5
Q ss_pred CeEEEe-CCCcEEE----EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-C
Q 041916 1 YPYIYN-RDGTELH----CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-G 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~----~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~ 73 (359)
+|+||| .++..+. ...+|... ++++|+|++.+|++|+.|+.|++||+.+++++..+.+|...|++++|+|++ .
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 589999 6666542 34478776 999999999999999999999999999999999999999999999999987 4
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeE
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTL 147 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~ 147 (359)
++++++.||.|++||+++++++..+. .|...+++++|+|+ +.+|++|+.|+.|++||+++++++..+ ...|.++
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 78999999999999999988766554 56778999999997 568999999999999999999888777 4578999
Q ss_pred EEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEc
Q 041916 148 DFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 148 ~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~ 215 (359)
+|+|++ +++++.|++|+|||+.++ +.+. ..+|.. .|++++|+| ++.+|++|+.||.+.+|..
T Consensus 276 ~~sp~~~~~lasgs~D~~i~iwd~~~~-~~~~-~~~H~~----~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 276 AYSYHSSPFLASISEDCTVAVLDADFS-EVFR-DLSHRD----FVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTSC-EEEE-ECCCSS----CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred EEcCCCCCEEEEEeCCCEEEEEECCCC-cEeE-ECCCCC----CEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 999987 567888999999998766 3333 345654 899999999 7888888877776666553
No 18
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-33 Score=256.48 Aligned_cols=212 Identities=18% Similarity=0.209 Sum_probs=170.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCE----------------------------------------------
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFL---------------------------------------------- 32 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~---------------------------------------------- 32 (359)
+|+||| .++..+..+..|... .+++|+|++.+
T Consensus 89 ~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~ 168 (380)
T 3iz6_a 89 RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168 (380)
T ss_dssp EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS
T ss_pred eEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC
Confidence 377888 777777777777664 66666666544
Q ss_pred ----EEEEecCCeEEEEECCCCeEEEEE-----ecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEEeCC-CCcceEEEecc
Q 041916 33 ----LASINKFGQLRYQDVTMGEIVGNF-----RTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMWKPT-TAAPLIKMLCH 101 (359)
Q Consensus 33 ----l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~-~~~~~~~~~~h 101 (359)
|++|+.|++|++||+.+++.+..+ .+|...|.+++|+| ++.+|++|+.||+|++||++ ...++..+.+|
T Consensus 169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h 248 (380)
T 3iz6_a 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGH 248 (380)
T ss_dssp SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCC
T ss_pred CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCc
Confidence 555556666666666666666666 56888999999987 78999999999999999998 45778889999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC----------CceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916 102 QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----------HAKTLDFSQKG--LLAVGTGSFVQILGDF 169 (359)
Q Consensus 102 ~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------~i~~~~~s~~g--l~~~~~d~~i~i~d~~ 169 (359)
.+.|++++|+|++.+|++|+.|++|++||++++.++..+.. .+.+++|+|+| +++++.||.|++||+.
T Consensus 249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETT
T ss_pred CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECC
Confidence 99999999999999999999999999999999988877621 37899999999 6677789999999976
Q ss_pred CCCCcccee----ecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 170 SGSHNYSRY----MGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 170 ~~~~~~~~~----~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
.+ .....+ .+| ...|++++|+|+|.+|++|+.||.+.+|...+
T Consensus 329 ~~-~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 329 LA-EMVLNLGTLQNSH----EGRISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp TC-CEEEEECCSCSSC----CCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred CC-ceEEEEecccCCC----CCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 66 333333 344 44899999999999999988888777776443
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.9e-33 Score=270.38 Aligned_cols=209 Identities=16% Similarity=0.148 Sum_probs=174.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEcCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-------TGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~ 71 (359)
+|++|| .+++.+.++.+|... ++++|+|++.+|++|+.|++|++||+.+++++..+. +|.+.|.+++|+|+
T Consensus 171 ~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd 250 (611)
T 1nr0_A 171 TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 250 (611)
T ss_dssp CEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred eEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC
Confidence 589999 888889999999986 999999999999999999999999999999988884 79999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcceE-------------------------------------------EEeccCCCeEEE
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAAPLI-------------------------------------------KMLCHQGPVSAL 108 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~~~~-------------------------------------------~~~~h~~~v~~i 108 (359)
+.+|++|+.|++|++||+.+++.+. .+.+|...|+++
T Consensus 251 g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l 330 (611)
T 1nr0_A 251 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL 330 (611)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEE
Confidence 9999999999999999998765433 334789999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------------------------------------------------
Q 041916 109 AFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------------------------------------------------ 140 (359)
Q Consensus 109 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------------------------------------------ 140 (359)
+|+|+|++|++++.|++|++||+.++.+...+
T Consensus 331 ~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~ 410 (611)
T 1nr0_A 331 SSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKL 410 (611)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEEC
T ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeec
Confidence 99999999999999999999999865432211
Q ss_pred -------------------------------------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916 141 -------------------------------------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181 (359)
Q Consensus 141 -------------------------------------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 181 (359)
...+.+++|+|+| +++++.|+.|++||+..+.........|
T Consensus 411 ~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h 490 (611)
T 1nr0_A 411 SSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 490 (611)
T ss_dssp SSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEEC
T ss_pred CCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCC
Confidence 0124678999999 7778889999999975542111112445
Q ss_pred cCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 182 SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 182 ~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.. .|++++|+|+|++|++++.|+.+.+|
T Consensus 491 ~~----~v~~v~fspdg~~las~s~d~~v~~w 518 (611)
T 1nr0_A 491 PA----EITSVAFSNNGAFLVATDQSRKVIPY 518 (611)
T ss_dssp SS----CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CC----ceEEEEECCCCCEEEEEcCCCCEEEE
Confidence 44 89999999999999999988765554
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=250.83 Aligned_cols=213 Identities=14% Similarity=0.153 Sum_probs=175.8
Q ss_pred CeEEEe-CCCcEE---EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RDGTEL---HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~---~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
+|+||| .++... ....+|... .+++|+|++.+|++|+.|++|++||+.++ .++..+.+|...|.+++|+|++.
T Consensus 39 ~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 118 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118 (345)
T ss_dssp CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS
T ss_pred eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC
Confidence 589999 555432 223678876 99999999999999999999999999876 46788899999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCc---ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee--eEec---cCCce
Q 041916 74 VVSLGHSGGTVTMWKPTTAA---PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV--LQTL---PGHAK 145 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~---~~~i~ 145 (359)
+|++|+.|++|++||+.++. ++..+.+|...|.+++|+|++.+|++++.|++|++||++++.. ...+ .+.|.
T Consensus 119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198 (345)
T ss_dssp EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE
T ss_pred EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceE
Confidence 99999999999999998764 3556778999999999999999999999999999999988753 3445 45799
Q ss_pred eEEEcCCc--eEEEEcCCcEEEEcCCCCCCc--------------cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHN--------------YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
+++|+|+| +++++.|++|++|+....... +..+.++ +...|.+++|+|++..|++++.|+.
T Consensus 199 ~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF---HSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS---CSSCEEEEEECTTTCCEEEEETTSC
T ss_pred EEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC---CCCcEEEEEEecCCCEEEEEeCCCe
Confidence 99999999 788889999999985332111 1112221 3348999999999999999999988
Q ss_pred EEEEEcC
Q 041916 210 SSILVPG 216 (359)
Q Consensus 210 ~~i~~~~ 216 (359)
+++|...
T Consensus 276 i~vw~~~ 282 (345)
T 3fm0_A 276 IRVFQED 282 (345)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8887654
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.7e-33 Score=246.51 Aligned_cols=213 Identities=15% Similarity=0.195 Sum_probs=183.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC------C
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF------N 72 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~------~ 72 (359)
+|+||| .+++.+..+.+|... .+++|+|++.+|++|+.|++|++||+. +.++..+.+|...|.+++|+|. +
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 489999 899999999999987 999999999999999999999999996 6778889999999999999995 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEc
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFS 150 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s 150 (359)
..|++|+.|+.|++||+++.+....+.+|...|++++|+|+|.+|++++.|++|++||+++++++..+ ...+.+++|+
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 246 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence 48999999999999999999988899999999999999999999999999999999999999988887 5679999999
Q ss_pred CCc-eEEEEcCCcEEEEcCCCCCCccceeecc----cCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 151 QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGH----SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 151 ~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
|++ +++++.++.+++|++... .....+..+ ...+...+.+++|+|+|++|++|+.||.+++|..
T Consensus 247 p~~~~la~~~~~~i~v~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 247 PNRYWLAAATATGIKVFSLDPQ-YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp SSSSEEEEEETTEEEEEEETTE-EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEcCCCcEEEEeCcC-eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 999 777777888999996543 222222111 1112336899999999999999988887777754
No 22
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-33 Score=260.45 Aligned_cols=210 Identities=10% Similarity=0.126 Sum_probs=179.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+|++|| .++.....+..|.......|+|++.+|++|+.||.|++||+.++.....+.+|...|.+++|+|++.+|++|+
T Consensus 79 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s 158 (420)
T 3vl1_A 79 HDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSS 158 (420)
T ss_dssp EEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEe
Confidence 378899 5555555566663336678899999999999999999999999999888889999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------------------
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------------ 141 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------ 141 (359)
.||.|++||+.+++.+..+.+|.+.|++++|+|++.+|++++.|++|++||+++++++..+.
T Consensus 159 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 238 (420)
T 3vl1_A 159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGT 238 (420)
T ss_dssp TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECC
T ss_pred CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999998887763
Q ss_pred ---------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCe
Q 041916 142 ---------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGW 209 (359)
Q Consensus 142 ---------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~ 209 (359)
..+.+++|+|+| +++++.||.|++||+.++.........|.. .|++++|+|++. +|++|+.||.
T Consensus 239 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~g~~dg~ 314 (420)
T 3vl1_A 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTC----SCNSLTVDGNNANYIYAGYENGM 314 (420)
T ss_dssp CSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSS----CEEEEEECSSCTTEEEEEETTSE
T ss_pred cceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCC----CceeEEEeCCCCCEEEEEeCCCe
Confidence 345566778999 777888999999998777433333334443 899999999999 9999999997
Q ss_pred EEEEE
Q 041916 210 SSILV 214 (359)
Q Consensus 210 ~~i~~ 214 (359)
+.+|.
T Consensus 315 i~vwd 319 (420)
T 3vl1_A 315 LAQWD 319 (420)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 76643
No 23
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.6e-34 Score=257.57 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=172.6
Q ss_pred CeEEEe-CCC--cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RDG--TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g--~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
+|+||| .++ ..+..+.+|... ++++|+|++.+|++++.|+.|++||+.++. ....+..|...|.+++|+|++.
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 113 (377)
T 3dwl_C 34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED 113 (377)
T ss_dssp CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS
T ss_pred EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC
Confidence 478999 666 678889999886 999999999999999999999999999877 6777888999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCc---ceEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-----------------
Q 041916 74 VVSLGHSGGTVTMWKPTTAA---PLIKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLR----------------- 132 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~---~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~----------------- 132 (359)
+|++|+.||.|++||++++. ....+.. |.+.|++++|+|++.+|++++.|+.|++||++
T Consensus 114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 193 (377)
T 3dwl_C 114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRL 193 (377)
T ss_dssp CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCC
T ss_pred EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccccccccc
Confidence 99999999999999999887 4677777 99999999999999999999999999999995
Q ss_pred -CceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 133 -KYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 133 -~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
.+.++..+ .+.|.+++|+|+| +++++.|+.|++||+.++..+ +..+..|.. +|.+++|+|++.+|++|
T Consensus 194 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 194 PFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQL----PLRSLLWANESAIVAAG 269 (377)
T ss_dssp CEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSS----CEEEEEEEETTEEEEEE
T ss_pred chhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCC----ceEEEEEcCCCCEEEEE
Confidence 34455555 4568999999999 778889999999998777432 556666655 89999999999999999
Q ss_pred cCCCeEEEEE
Q 041916 205 HSMGWSSILV 214 (359)
Q Consensus 205 ~~dg~~~i~~ 214 (359)
+.++.+.++.
T Consensus 270 ~~~~~~~~~~ 279 (377)
T 3dwl_C 270 YNYSPILLQG 279 (377)
T ss_dssp SSSSEEEECC
T ss_pred cCCcEEEEEe
Confidence 9888764433
No 24
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-32 Score=246.95 Aligned_cols=200 Identities=16% Similarity=0.206 Sum_probs=179.3
Q ss_pred cEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe
Q 041916 10 TELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 10 ~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd 88 (359)
....++.+|... ++++|+|++.+|+||+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+.+|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 457889999987 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC------cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCC--c--eE
Q 041916 89 PTTA------APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQK--G--LL 155 (359)
Q Consensus 89 ~~~~------~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~--g--l~ 155 (359)
+... .....+.+|.+.|.+++|+|++..|++++.|++|++||+.+++++..+. ..|.+++|+|+ | ++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 8643 3456777899999999999999999999999999999999999888883 46889999874 4 78
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++.|+.|++||+.++ .....+..|.. .|++++|+|++.+|++|+.||.+++|.
T Consensus 215 sgs~Dg~v~~wd~~~~-~~~~~~~~h~~----~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSG-QCVQAFETHES----DVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEeCCCeEEEEECCCC-cEEEEecCCCC----CeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 8889999999998776 56667777765 899999999999999999999877764
No 25
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-32 Score=245.26 Aligned_cols=212 Identities=19% Similarity=0.238 Sum_probs=175.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCC---
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR---TGLGRTDVMRVNPFN--- 72 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~--- 72 (359)
+|+||| .++..+..+.+|... .+++|+|++.+|++|+.|++|++||+. +....... .|...|.+++|+|++
T Consensus 99 ~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 99 TLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-GECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-SCEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred cEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-CCceeeeecccCCCceeeeeeeccccccc
Confidence 489999 899999999999987 999999999999999999999999998 44444443 688899999999987
Q ss_pred -------CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceeeEec--cC
Q 041916 73 -------GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVLQTL--PG 142 (359)
Q Consensus 73 -------~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~--~~ 142 (359)
.+|++|+.||.|++||. .......+.+|...|++++|+|+|++|++|+.|+.|++||++. ..+...+ ..
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~ 256 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGS 256 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEECSS
T ss_pred cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecCCC
Confidence 78999999999999994 4566778889999999999999999999999999999999954 3344444 45
Q ss_pred CceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCcc-ceeecc--------cCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 143 HAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNY-SRYMGH--------SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 143 ~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~-~~~~~~--------~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
.|.+++|+|++ +++++.|+.|++||+.+..... ..+..+ .. +...|.+++|+|+|.+|++|+.||.+++
T Consensus 257 ~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG-KNPQCTSLAWNALGKKLFAGFTDGVIRT 335 (343)
T ss_dssp CEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC-SCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC-CCCceEEEEECCCCCeEEEecCCceEEE
Confidence 79999999999 8888889999999987653221 122110 01 3347999999999999999999988887
Q ss_pred EEc
Q 041916 213 LVP 215 (359)
Q Consensus 213 ~~~ 215 (359)
|..
T Consensus 336 w~~ 338 (343)
T 2xzm_R 336 FSF 338 (343)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 26
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=245.39 Aligned_cols=211 Identities=14% Similarity=0.238 Sum_probs=168.4
Q ss_pred CeEEEeC--------CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEE
Q 041916 1 YPYIYNR--------DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMR 67 (359)
Q Consensus 1 ~v~iwd~--------~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~ 67 (359)
+|+|||. ++..+..+.+|... ++++|+|++.+|++|+.|++|++||+.. .+++..+.+|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 5899983 23467888999886 9999999999999999999999999943 256788899999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCC--cceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCc--------e
Q 041916 68 VNPFNGVVSLGHSGGTVTMWKPTTA--APLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKY--------E 135 (359)
Q Consensus 68 ~sp~~~~l~sg~~dg~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~--------~ 135 (359)
|+|++.+|++|+.||+|++||+.++ .++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||++.+ .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999998776 577888899999999999998 778999999999999999764 3
Q ss_pred eeEec----cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCC-Ccc-ceeecccCCCCcceEEEEEee--CCCEEEEEcC
Q 041916 136 VLQTL----PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGS-HNY-SRYMGHSMVKGYQIGKVSFRP--YEDVLGIGHS 206 (359)
Q Consensus 136 ~~~~~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~-~~~-~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~ 206 (359)
+...+ ...|.+++|++++ +++++.||.|++||..++. ... .....| ....|.+++|+| ++.+|++|+.
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h---~~~~v~~v~~~~~~~~~~las~s~ 317 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCH---GVYEINVVKWLELNGKTILATGGD 317 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTT---TTSCEEEEEEC-----CCEEEEET
T ss_pred EeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEecccccc---ccceEEEEEEecCCCceEEEEecC
Confidence 34443 3468999999988 8889999999999965542 111 112334 222799999999 6888999888
Q ss_pred CCeEEEEE
Q 041916 207 MGWSSILV 214 (359)
Q Consensus 207 dg~~~i~~ 214 (359)
||.+++|.
T Consensus 318 Dg~v~~W~ 325 (330)
T 2hes_X 318 DGIVNFWS 325 (330)
T ss_dssp TSEEEEEE
T ss_pred CCcEEEEE
Confidence 88777765
No 27
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-32 Score=247.42 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=176.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~s 77 (359)
+|+||| .++..+..+.+|... ++++|+|++.+|++|+.|++|++||+.++++...+. +...+.+++|+| ++.+|++
T Consensus 146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~ 224 (393)
T 1erj_A 146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAA 224 (393)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEE
Confidence 589999 888899999999986 999999999999999999999999999999887776 557899999999 8899999
Q ss_pred EeCCCeEEEEeCCCCcceEEE-------eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce------------eeE
Q 041916 78 GHSGGTVTMWKPTTAAPLIKM-------LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE------------VLQ 138 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~------------~~~ 138 (359)
|+.||.|++||+.++..+..+ .+|.+.|++++|+|+|.+|++++.|++|++||+++.. +..
T Consensus 225 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~ 304 (393)
T 1erj_A 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 304 (393)
T ss_dssp EETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred EcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceE
Confidence 999999999999998877766 5799999999999999999999999999999998642 233
Q ss_pred ec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee------CCCEEEEEcCC
Q 041916 139 TL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP------YEDVLGIGHSM 207 (359)
Q Consensus 139 ~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p------~~~~l~~~~~d 207 (359)
.+ ...|.+++|+|++ +++++.|+.|++||+.++ ..+..+.+|.. .|.+++|+| ++.+|++|+.|
T Consensus 305 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~-~~~~~l~~h~~----~v~~v~~~~~~~~~p~~~~l~sgs~D 379 (393)
T 1erj_A 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-NPLLMLQGHRN----SVISVAVANGSSLGPEYNVFATGSGD 379 (393)
T ss_dssp EEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECSSCTTCTTCEEEEEEETT
T ss_pred EEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC-eEEEEECCCCC----CEEEEEecCCcCcCCCCCEEEEECCC
Confidence 33 3468999999999 778889999999998776 56677777865 899999987 56677776666
Q ss_pred CeEEEEE
Q 041916 208 GWSSILV 214 (359)
Q Consensus 208 g~~~i~~ 214 (359)
|.+++|.
T Consensus 380 g~i~iW~ 386 (393)
T 1erj_A 380 CKARIWK 386 (393)
T ss_dssp SEEEEEE
T ss_pred CcEEECc
Confidence 6555554
No 28
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.4e-32 Score=238.77 Aligned_cols=212 Identities=14% Similarity=0.167 Sum_probs=175.3
Q ss_pred CeEEEe-C--CCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-
Q 041916 1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF- 71 (359)
Q Consensus 1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~- 71 (359)
+|+||| . ++..+.++.+|.+. ++++|+|+ +.+|++|+.|++|++||+.++. .+..+..|...|.+++|+|+
T Consensus 32 ~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111 (297)
T ss_dssp CEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred EEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence 589999 3 34678899999987 99999863 8999999999999999999874 56678889999999999997
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcCC-------------CCEEEEEeCCCeEEEEEcCCce
Q 041916 72 -NGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHPN-------------GHLMATSGKECKIKIWDLRKYE 135 (359)
Q Consensus 72 -~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~-------------~~~l~~~~~d~~i~iwd~~~~~ 135 (359)
+.+|++|+.||.|++||++++. ....+.+|...|++++|+|+ +.+|++|+.|++|++||++++.
T Consensus 112 ~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 8899999999999999998763 24567799999999999997 5799999999999999998765
Q ss_pred ----eeEec---cCCceeEEEcCC---c--eEEEEcCCcEEEEcCCCCCCcc--cee--ecccCCCCcceEEEEEeeCCC
Q 041916 136 ----VLQTL---PGHAKTLDFSQK---G--LLAVGTGSFVQILGDFSGSHNY--SRY--MGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 136 ----~~~~~---~~~i~~~~~s~~---g--l~~~~~d~~i~i~d~~~~~~~~--~~~--~~~~~~~~~~v~~~~~~p~~~ 199 (359)
+...+ .+.|.+++|+|+ + +++++.|++|++||+....... ..+ ..| ...|.+++|+|+++
T Consensus 192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~----~~~v~~~~~s~~g~ 267 (297)
T 2pm7_B 192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF----PDVLWRASWSLSGN 267 (297)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC----SSCEEEEEECSSSC
T ss_pred ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccC----CCcEEEEEECCCCC
Confidence 44555 456899999998 3 7788899999999976542211 122 233 34899999999999
Q ss_pred EEEEEcCCCeEEEEEcC
Q 041916 200 VLGIGHSMGWSSILVPG 216 (359)
Q Consensus 200 ~l~~~~~dg~~~i~~~~ 216 (359)
+|++++.||.+.+|...
T Consensus 268 ~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 268 VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CEEEEETTSCEEEEEEC
T ss_pred EEEEEcCCCcEEEEEEC
Confidence 99999998888887643
No 29
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.7e-33 Score=250.86 Aligned_cols=208 Identities=13% Similarity=0.146 Sum_probs=163.8
Q ss_pred eEEEe-CCCcEE----EEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE----EEecCCCCeEEEEEcCC
Q 041916 2 PYIYN-RDGTEL----HCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG----NFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 2 v~iwd-~~g~~~----~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp~ 71 (359)
|++|+ .++... ....+|.. +++++|+|++.+| +++.||+|++||+.+++... ...+|...|.+++|+|+
T Consensus 72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spd 150 (357)
T 4g56_B 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD 150 (357)
T ss_dssp EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSS
T ss_pred EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCC
Confidence 67787 555432 22334554 5999999998654 57789999999999886542 34479999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEec-----cCCce
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTL-----PGHAK 145 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~ 145 (359)
+.+|++|+.||.|++||+++++++..+.+|.+.|++++|+|++. ++++++.|++|++||+++++++..+ ...+.
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~ 230 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPT 230 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccccccc
Confidence 99999999999999999999999999999999999999999875 7899999999999999998876655 34689
Q ss_pred eEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEEcCCCeEEEEEc
Q 041916 146 TLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIGHSMGWSSILVP 215 (359)
Q Consensus 146 ~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~~~dg~~~i~~~ 215 (359)
+++|+|++ +++++.|+.|++||+.++ .....+..|.. .|++++|+|++ .+|++|+.||.+++|..
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~----~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQ----NITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSS----CEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred chhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccce----eEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 99999986 556678999999998766 56667777755 89999999987 57888888887777654
No 30
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.4e-33 Score=255.46 Aligned_cols=207 Identities=15% Similarity=0.212 Sum_probs=182.3
Q ss_pred EEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC
Q 041916 4 IYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG 81 (359)
Q Consensus 4 iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d 81 (359)
.|+ .+..+..+|.+|.+. ++++|+|++.+|+||+.||+|++||+.+++....+..|...|.+++|+|++.+|++|+.|
T Consensus 50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 466 566778899999987 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCc-------ceEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec--------cCCce
Q 041916 82 GTVTMWKPTTAA-------PLIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL--------PGHAK 145 (359)
Q Consensus 82 g~v~lwd~~~~~-------~~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~i~ 145 (359)
+.|++||+.+.. ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||++++.++..+ ...+.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999987532 34557799999999999996 457999999999999999999887665 23578
Q ss_pred eEEEcC-Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 146 TLDFSQ-KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 146 ~~~~s~-~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++|+| ++ +++++.|+.|++||+.........+.+|.. .|++++|+|++.+|++|+.||.+++|.
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~----~v~~v~~~p~~~~l~s~s~D~~i~lwd 277 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG----DINSVKFFPDGQRFGTGSDDGTCRLFD 277 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS----CCCEEEECTTSSEEEEECSSSCEEEEE
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC----CeEEEEEecCCCeEEEEcCCCeEEEEE
Confidence 999987 55 788889999999998766567777888866 899999999999999999999887764
No 31
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-32 Score=242.61 Aligned_cols=211 Identities=14% Similarity=0.123 Sum_probs=168.2
Q ss_pred CeEEEe-CCC--cEEEEe-cc-CCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEE
Q 041916 1 YPYIYN-RDG--TELHCL-KE-HGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMR 67 (359)
Q Consensus 1 ~v~iwd-~~g--~~~~~l-~~-h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~ 67 (359)
+|+||| ..+ ..+..+ .. |... ++++|+|++.+|++|+.|++|++||+.. ..++..+.+|...|.+++
T Consensus 35 ~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 35 KIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp CEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEE
T ss_pred EEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEE
Confidence 489999 443 455666 44 8776 9999999999999999999999999843 456778899999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCC----cceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc--eeeEec-
Q 041916 68 VNPFNGVVSLGHSGGTVTMWKPTTA----APLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY--EVLQTL- 140 (359)
Q Consensus 68 ~sp~~~~l~sg~~dg~v~lwd~~~~----~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~- 140 (359)
|+|++.+|++|+.|++|++||++.. +++..+.+|...|++++|+|++.+|++++.|++|++||++++ .++..+
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~ 194 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence 9999999999999999999999532 456678899999999999999999999999999999999876 566666
Q ss_pred --cCCceeEEEcCC--c--eEEEEcCCcEEEEcCCCCCC-------ccceeec-ccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 141 --PGHAKTLDFSQK--G--LLAVGTGSFVQILGDFSGSH-------NYSRYMG-HSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 141 --~~~i~~~~~s~~--g--l~~~~~d~~i~i~d~~~~~~-------~~~~~~~-~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
.+.|.+++|+|+ + +++++.|++|++||+..+.. ....+.. |. ..|.+++|++++ +|++++.
T Consensus 195 ~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~v~~s~~~-~l~s~~~ 269 (330)
T 2hes_X 195 GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK----RQVYNVAWGFNG-LIASVGA 269 (330)
T ss_dssp CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS----SCEEEEEECTTS-CEEEEET
T ss_pred CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc----cceEEEEEcCCC-EEEEEeC
Confidence 457899999998 5 67888999999999754311 1122222 43 489999999765 7888888
Q ss_pred CCeEEEEEcC
Q 041916 207 MGWSSILVPG 216 (359)
Q Consensus 207 dg~~~i~~~~ 216 (359)
||.+.+|...
T Consensus 270 dg~v~iw~~~ 279 (330)
T 2hes_X 270 DGVLAVYEEV 279 (330)
T ss_dssp TSCEEEEEEE
T ss_pred CCEEEEEEcC
Confidence 8888887654
No 32
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5.8e-32 Score=241.54 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=166.4
Q ss_pred CCcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe-----EEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 8 DGTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE-----IVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 8 ~g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
+.....+|++|.+. ++++|+|+ +.+|+||+.|++|++||+.+++ +...+.+|...|.+++|+|++.+|++|+.
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 33456789999997 99999997 6899999999999999987643 56778889999999999999988888877
Q ss_pred CCeEEEEeC-----------------------------------------------------------------------
Q 041916 81 GGTVTMWKP----------------------------------------------------------------------- 89 (359)
Q Consensus 81 dg~v~lwd~----------------------------------------------------------------------- 89 (359)
||.|++|+.
T Consensus 107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 186 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP 186 (340)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence 765554443
Q ss_pred ----------------CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcC
Q 041916 90 ----------------TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ 151 (359)
Q Consensus 90 ----------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~ 151 (359)
.+++.+..+.+|.++|++++|+|++++|++|+.|+.|++||+++..++..+ ...+.+++|+|
T Consensus 187 ~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~ 266 (340)
T 4aow_A 187 IIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSP 266 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECS
T ss_pred EEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCC
Confidence 223333345567889999999999999999999999999999999988888 45789999999
Q ss_pred Cc-eEEEEcCCcEEEEcCCCCCCccceeecc-----cCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGH-----SMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
++ +++++.|+.|++||+... .....+..+ ...+...|++++|+|++++|++|+.||.+++|...+
T Consensus 267 ~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 267 NRYWLCAATGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp SSSEEEEEETTEEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred CCceeeccCCCEEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99 888999999999997654 222222110 001334899999999999999999998888776543
No 33
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.5e-32 Score=257.63 Aligned_cols=204 Identities=20% Similarity=0.338 Sum_probs=183.8
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
.|++||.++..+..+..|... ++++|+|++.+|++++.|+.|++||. +++.+..+.+|...|.+++|+|++.+|++++
T Consensus 367 ~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 445 (577)
T 2ymu_A 367 TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445 (577)
T ss_dssp EEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEc
Confidence 378999889999999999886 99999999999999999999999995 5788899999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--e
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--L 154 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l 154 (359)
.|+.|++||+ +++.+..+.+|...|++++|+|++.+|++++.|++|++||. +++++..+ ...|++++|+|+| +
T Consensus 446 ~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 446 DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred CCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEE
Confidence 9999999996 46778888999999999999999999999999999999995 56777777 4579999999999 7
Q ss_pred EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++++.|+.|++||. ++ ..+..+.+|.. .|++++|+|++++|++++.||.+.+|
T Consensus 524 ~s~~~dg~v~lwd~-~~-~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~D~~i~~W 576 (577)
T 2ymu_A 524 ASASDDKTVKLWNR-NG-QLLQTLTGHSS----SVWGVAFSPDGQTIASASSDKTVKLW 576 (577)
T ss_dssp EEEETTSEEEEECT-TS-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEEECcCEEEEEeC-CC-CEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence 78889999999994 44 57777888866 89999999999999998888877666
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-31 Score=238.96 Aligned_cols=199 Identities=14% Similarity=0.148 Sum_probs=172.8
Q ss_pred EEEEeccCCCe-EEEEE-----ec-CCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 11 ELHCLKEHGAV-LKLQF-----LR-NHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~-----s~-~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
....|.+|.+. ++++| ++ ++.+|++|+.|++|++||+.+ +.+...+.+|...|.+++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 46788999987 99999 76 899999999999999999974 346678889999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-----cCCceeEEEcC
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQ 151 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~ 151 (359)
+|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++++|++++.|++|++||+......... ...+.+++|+|
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~ 172 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP 172 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence 9999999999999999999999999999999999999999999999999999999854332222 34689999999
Q ss_pred Cc------------eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 152 KG------------LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 152 ~g------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
++ +++++.|+.|++||. .. .....+..|.. .|.+++|+|++++|++|+.||.+.+|..
T Consensus 173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~-~~~~~~~~h~~----~v~~~~~s~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 173 IMKSANKVQPFAPYFASVGWDGRLKVWNT-NF-QIRYTFKAHES----NVNHLSISPNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp CCCSCSCCCSSCCEEEEEETTSEEEEEET-TT-EEEEEEECCSS----CEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred ccccccccCCCCCEEEEEcCCCEEEEEcC-CC-ceeEEEcCccc----cceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 73 778889999999993 33 45556667755 8999999999999999999998888875
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.8e-31 Score=255.68 Aligned_cols=205 Identities=19% Similarity=0.331 Sum_probs=183.5
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
+|++||.++..+..+.+|... .+++|+|++.+|++++.|+.|++||. +++.+..+..|...|.+++|+|++.+|++++
T Consensus 326 ~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 326 TVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp CEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred eEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence 478999888888899999886 99999999999999999999999995 5788899999999999999999999999999
Q ss_pred CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--e
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--L 154 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l 154 (359)
.|+.|++||. +++.+..+.+|...|++++|+|++.+|++++.|++|++||+. ++.+..+ ...|.+++|+|++ +
T Consensus 405 ~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 405 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence 9999999995 567788899999999999999999999999999999999974 5555555 5678999999999 7
Q ss_pred EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++++.|+.|++||. ++ ..+..+.+|.. .|++++|+|++++|++++.||.+.+|.
T Consensus 483 as~~~d~~i~iw~~-~~-~~~~~~~~h~~----~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NG-QLLQTLTGHSS----SVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EEEETTSEEEEEET-TS-CEEEEEECCSS----CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCEEEEEcC-CC-CEEEEEeCCCC----CEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 77889999999994 44 56777888865 899999999999999999998888875
No 36
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.6e-31 Score=238.15 Aligned_cols=213 Identities=15% Similarity=0.152 Sum_probs=183.8
Q ss_pred CeEEEe-CCCcE---EEEec--cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC
Q 041916 1 YPYIYN-RDGTE---LHCLK--EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd-~~g~~---~~~l~--~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~ 71 (359)
+|++|| .++.. +..+. .|... .+++|+|++.+|++++.||.|++||+.+++ ....+..|...|.+++|+|+
T Consensus 73 ~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~ 152 (337)
T 1gxr_A 73 CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD 152 (337)
T ss_dssp EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT
T ss_pred eEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCC
Confidence 378999 55542 33333 67766 999999999999999999999999999887 66778889999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEE
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDF 149 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~ 149 (359)
+.+|++++.||.|.+||+.+++.+..+..|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+ ...+.+++|
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~ 232 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGY 232 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999887776 568999999
Q ss_pred cCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 150 SQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 150 s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+|++ +++++.++.|++||+.+.. ...+..|.. .|.+++|+|++++|++++.||.+.+|....+.
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPD--KYQLHLHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSC--EEEECCCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCC--eEEEcCCcc----ceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence 9999 7777789999999977652 334455544 89999999999999999999988888765443
No 37
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.4e-32 Score=248.23 Aligned_cols=213 Identities=13% Similarity=0.068 Sum_probs=182.9
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
.|+||| .++.....+.+|... ++++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|
T Consensus 120 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 199 (420)
T 3vl1_A 120 DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199 (420)
T ss_dssp CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEE
T ss_pred CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 489999 888888888899887 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCcceEEEec---cCCCeEE---------------------EEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLC---HQGPVSA---------------------LAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~---h~~~v~~---------------------i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
+.||.|++||+++++++..+.. |...|.+ ++|+|++++|++++.||.|++||++++
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999998888874 3344444 555789999999999999999999998
Q ss_pred eeeEec----cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 135 EVLQTL----PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 135 ~~~~~~----~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
..+..+ ...+.+++|+|++ +++++.||.|++||+.++..++..+..| +...|.++ +.|++.+|++++.|
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~---~~~~v~~~-~~~~~~~l~s~~~d 355 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN---EGTPINNV-YFAAGALFVSSGFD 355 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES---TTSCEEEE-EEETTEEEEEETTT
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc---CCCCceEE-EeCCCCEEEEecCC
Confidence 877666 3568999999998 7778889999999988876666777765 33478887 45678888888888
Q ss_pred CeEEEEEcCC
Q 041916 208 GWSSILVPGS 217 (359)
Q Consensus 208 g~~~i~~~~~ 217 (359)
|.+.+|....
T Consensus 356 ~~v~iw~~~~ 365 (420)
T 3vl1_A 356 TSIKLDIISD 365 (420)
T ss_dssp EEEEEEEECC
T ss_pred ccEEEEeccC
Confidence 8888777554
No 38
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.2e-32 Score=260.24 Aligned_cols=209 Identities=12% Similarity=0.162 Sum_probs=181.2
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
+|+||+ .++.....+.+|... ++++|+|+|.+||+|+.|++|+|||+.++ .....+.+|.++|.+++|+|++..|+
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~ 119 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIA 119 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEE
T ss_pred EEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEE
Confidence 378999 788889999999987 99999999999999999999999999754 35567889999999999999999999
Q ss_pred EEeCC----CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEecc---CCceeEE
Q 041916 77 LGHSG----GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLD 148 (359)
Q Consensus 77 sg~~d----g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~ 148 (359)
+++.+ +.|.+|| ++.....+.+|...|++++|+|++. .|++|+.|++|++||..+++++..+. ..|.+++
T Consensus 120 ~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 120 AVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 197 (611)
T ss_dssp EEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred EEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence 98865 4788887 4566777889999999999999987 59999999999999999998888773 4689999
Q ss_pred EcCCc--eEEEEcCCcEEEEcCCCCCCccceee-------cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYM-------GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
|+|+| +++++.|++|++||+.++ .....+. +|.. .|.+++|+|++++|++|+.|+.+++|...
T Consensus 198 fspdg~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~----~V~~v~~spdg~~l~s~s~D~~v~lWd~~ 269 (611)
T 1nr0_A 198 YNPDGSLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSG----SVFGLTWSPDGTKIASASADKTIKIWNVA 269 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSS----CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ECCCCCEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCC----CEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99999 778899999999997766 3433332 4544 89999999999999999999999998654
No 39
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.4e-31 Score=235.46 Aligned_cols=202 Identities=12% Similarity=0.156 Sum_probs=169.5
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC--CeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM--GEIVGNFRTGLGRTDVMRVNPF--NGVVSLGHSGGTVTM 86 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~sp~--~~~l~sg~~dg~v~l 86 (359)
+..+.+|.+. ++++|+|+|++||+|+.|++|++||+.. ++++..+.+|.++|.+++|+|+ +.+|++|+.||+|++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3467889887 9999999999999999999999999974 3678899999999999999864 899999999999999
Q ss_pred EeCCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCcee--eEec---cCCceeEEEcCC-----
Q 041916 87 WKPTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEV--LQTL---PGHAKTLDFSQK----- 152 (359)
Q Consensus 87 wd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~--~~~~---~~~i~~~~~s~~----- 152 (359)
||+.++. .+..+.+|...|++++|+|+ |.+|++++.|++|++||++++.. ...+ ...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998774 56677889999999999997 89999999999999999987532 2222 457899999996
Q ss_pred --------c--eEEEEcCCcEEEEcCCCCCC---ccceeecccCCCCcceEEEEEeeCC---CEEEEEcCCCeEEEEEcC
Q 041916 153 --------G--LLAVGTGSFVQILGDFSGSH---NYSRYMGHSMVKGYQIGKVSFRPYE---DVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 153 --------g--l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~~---~~l~~~~~dg~~~i~~~~ 216 (359)
+ +++++.|+.|++||+.++.. ....+.+|.. .|.+++|+|++ .+|++|+.|+.+.+|...
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~----~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCC----ceEEEEECCCCCCceEEEEEECCCcEEEEEeC
Confidence 3 77888999999999766532 3345556655 89999999985 788888888888887654
Q ss_pred C
Q 041916 217 S 217 (359)
Q Consensus 217 ~ 217 (359)
.
T Consensus 238 ~ 238 (297)
T 2pm7_B 238 N 238 (297)
T ss_dssp S
T ss_pred C
Confidence 3
No 40
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-31 Score=241.07 Aligned_cols=206 Identities=17% Similarity=0.224 Sum_probs=177.9
Q ss_pred CeEEEe-CCCcEEEEecc-CCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKE-HGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~-h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
.|+||| .+|.....+.. |... ++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++
T Consensus 114 ~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~ 191 (401)
T 4aez_A 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSS 191 (401)
T ss_dssp EEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEE
T ss_pred eEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEE
Confidence 389999 88888877776 5665 999999999999999999999999999999999999999999999994 579999
Q ss_pred EeCCCeEEEEeCC-CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc
Q 041916 78 GHSGGTVTMWKPT-TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG 153 (359)
Q Consensus 78 g~~dg~v~lwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g 153 (359)
|+.||.|.+||++ ....+..+.+|.+.|.+++|+|++.+|++++.|+.|++||++++.++..+ ...|.+++|+|++
T Consensus 192 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 192 GSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp EETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTS
T ss_pred EcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCC
Confidence 9999999999998 45667788899999999999999999999999999999999999888777 4578999999987
Q ss_pred --eEEEE---cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE--EcCCCeEEEEE
Q 041916 154 --LLAVG---TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI--GHSMGWSSILV 214 (359)
Q Consensus 154 --l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~--~~~dg~~~i~~ 214 (359)
+++++ .|+.|++||+.++ .....+. +. ..|.+++|+|++.+|++ |+.+|.+.+|.
T Consensus 272 ~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~ 333 (401)
T 4aez_A 272 SNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AG----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 333 (401)
T ss_dssp TTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CS----SCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred CCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CC----CcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence 55544 5899999998766 4444443 32 27999999999999998 44788766654
No 41
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-32 Score=257.08 Aligned_cols=209 Identities=11% Similarity=0.099 Sum_probs=172.8
Q ss_pred CeEEEe-CCCcE----EEEeccCCC-eEEEEEecC------CCEEEEEecCCeEEEEECCCCeE-----------EEEEe
Q 041916 1 YPYIYN-RDGTE----LHCLKEHGA-VLKLQFLRN------HFLLASINKFGQLRYQDVTMGEI-----------VGNFR 57 (359)
Q Consensus 1 ~v~iwd-~~g~~----~~~l~~h~~-~~~l~~s~~------~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~ 57 (359)
+|+||| .++.. ..++.+|.+ +.+++|+|+ +.+||+++.||+|++||+.++.. ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 378999 55553 245677766 499999996 57999999999999999987642 24678
Q ss_pred cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-cceEEEeccCCCeEEE--EEcCCC-CEEEEEeCCCeEEEEEcCC
Q 041916 58 TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-APLIKMLCHQGPVSAL--AFHPNG-HLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 58 ~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i--~~~~~~-~~l~~~~~d~~i~iwd~~~ 133 (359)
+|...|++++|+|++ .|++|+.||+|++||++++ .+...+.+|.+.|++| +|+|+| .+|++|+.|++|++||+++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~ 342 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD 342 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred cCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence 899999999999864 8999999999999999976 4556788999999999 578888 8999999999999999999
Q ss_pred ceeeEec----c-CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 134 YEVLQTL----P-GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 134 ~~~~~~~----~-~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
++++..+ . ..+.+++|+|++ +++++.|++|++||+.++ .....+.+|.. .|++++|+|++.+|++|+.
T Consensus 343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~-~~~~~l~gH~~----~V~sva~Sp~g~~l~Sgs~ 417 (524)
T 2j04_B 343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA-FAVHPLVSRET----TITAIGVSRLHPMVLAGSA 417 (524)
T ss_dssp HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-TCCEEEEECSS----CEEEEECCSSCCBCEEEET
T ss_pred CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-ccceeeecCCC----ceEEEEeCCCCCeEEEEEC
Confidence 8765444 2 247899999998 677778899999998776 45566777765 8999999999999999888
Q ss_pred CCeEEEEEc
Q 041916 207 MGWSSILVP 215 (359)
Q Consensus 207 dg~~~i~~~ 215 (359)
||.+.+|..
T Consensus 418 Dgtv~lwd~ 426 (524)
T 2j04_B 418 DGSLIITNA 426 (524)
T ss_dssp TTEEECCBS
T ss_pred CCEEEEEec
Confidence 887776654
No 42
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.9e-32 Score=241.28 Aligned_cols=212 Identities=15% Similarity=0.129 Sum_probs=175.1
Q ss_pred CeEEEe-CCCc--EEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCC-
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPF- 71 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~- 71 (359)
+|+||| .++. .+..+.+|.+. ++++|+| ++.+|++|+.|++|++||+.++ ..+..+.+|...|.+++|+|+
T Consensus 36 ~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 115 (316)
T 3bg1_A 36 SVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD 115 (316)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT
T ss_pred eEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCC
Confidence 489999 6664 46789999987 9999986 4899999999999999999987 466778899999999999998
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCcc---eEEEeccCCCeEEEEEcCC-----------------CCEEEEEeCCCeEEEEE
Q 041916 72 -NGVVSLGHSGGTVTMWKPTTAAP---LIKMLCHQGPVSALAFHPN-----------------GHLMATSGKECKIKIWD 130 (359)
Q Consensus 72 -~~~l~sg~~dg~v~lwd~~~~~~---~~~~~~h~~~v~~i~~~~~-----------------~~~l~~~~~d~~i~iwd 130 (359)
+.+|++|+.||+|++||+..+.. ...+.+|...|.+++|+|+ +.+|++|+.|++|++||
T Consensus 116 ~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd 195 (316)
T 3bg1_A 116 YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWK 195 (316)
T ss_dssp TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEE
T ss_pred CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEE
Confidence 78999999999999999987632 2345689999999999997 46899999999999999
Q ss_pred cCCc---eeeEec---cCCceeEEEcCCc------eEEEEcCCcEEEEcCCCCC---CccceeecccCCCCcceEEEEEe
Q 041916 131 LRKY---EVLQTL---PGHAKTLDFSQKG------LLAVGTGSFVQILGDFSGS---HNYSRYMGHSMVKGYQIGKVSFR 195 (359)
Q Consensus 131 ~~~~---~~~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~ 195 (359)
++.. .++..+ .+.|.+++|+|++ +++++.|++|++|++.... .....+..|.. .|.+++|+
T Consensus 196 ~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~----~v~~v~~s 271 (316)
T 3bg1_A 196 EEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFND----VVWHVSWS 271 (316)
T ss_dssp ECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSS----CEEEEEEC
T ss_pred eCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCC----cEEEEEEc
Confidence 9754 455555 3568999999974 7888999999999976521 12234445544 89999999
Q ss_pred eCCCEEEEEcCCCeEEEEEcC
Q 041916 196 PYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 196 p~~~~l~~~~~dg~~~i~~~~ 216 (359)
|++.+|++|+.||.+.+|...
T Consensus 272 p~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 272 ITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TTTCCEEEEESSSCEEEEEEC
T ss_pred CCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999888887643
No 43
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-31 Score=260.24 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=175.4
Q ss_pred CeEEEe-CC-----CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RD-----GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~-----g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
+|+||+ .+ +.....+.+|... ++++|+|++.+|++|+.||+|++||+.++..+..+.+|...|.+++|+|++.
T Consensus 406 ~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~ 485 (694)
T 3dm0_A 406 SIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485 (694)
T ss_dssp EEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred cEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCC
Confidence 489998 33 3456788999987 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEE---eccCCCeEEEEEcCCC--CEEEEEeCCCeEEEEEcCCceeeEec---cCCce
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKM---LCHQGPVSALAFHPNG--HLMATSGKECKIKIWDLRKYEVLQTL---PGHAK 145 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~---~~h~~~v~~i~~~~~~--~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~ 145 (359)
+|++|+.|++|++||+......... .+|...|.+++|+|++ .+|++++.|++|++||++++++...+ .+.|.
T Consensus 486 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~ 565 (694)
T 3dm0_A 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565 (694)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE
Confidence 9999999999999998654332222 3688899999999986 68999999999999999999888777 45789
Q ss_pred eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+++|+|+| +++++.|+.|++||+.++ ..+..+..+ ..|.+++|+|++.+|++++.++ +.+|...
T Consensus 566 ~v~~spdg~~l~sg~~Dg~i~iwd~~~~-~~~~~~~~~-----~~v~~~~~sp~~~~l~~~~~~~-i~iwd~~ 631 (694)
T 3dm0_A 566 TVAVSPDGSLCASGGKDGVVLLWDLAEG-KKLYSLEAN-----SVIHALCFSPNRYWLCAATEHG-IKIWDLE 631 (694)
T ss_dssp EEEECTTSSEEEEEETTSBCEEEETTTT-EEEECCBCS-----SCEEEEEECSSSSEEEEEETTE-EEEEETT
T ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCC-ceEEEecCC-----CcEEEEEEcCCCcEEEEEcCCC-EEEEECC
Confidence 99999999 778889999999998776 343333332 2799999999998887766543 5555543
No 44
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=6e-31 Score=257.88 Aligned_cols=214 Identities=17% Similarity=0.150 Sum_probs=180.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCC--C
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNPFN--G 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~--~ 73 (359)
+|+||| .++..+..+.+|... .+++|+|++.+|++|+.|++|++||+......... .+|...|.+++|+|++ .
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 489999 889999999999986 99999999999999999999999998654433222 3688899999999987 5
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcC
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ 151 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~ 151 (359)
.|++|+.||+|++||+++++....+.+|.+.|++++|+|+|++|++|+.|++|++||+++++++..+ ...+.+++|+|
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp 612 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSP 612 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECS
T ss_pred eEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999988877 45789999999
Q ss_pred Cc-eEEEEcCCcEEEEcCCCCCCccceeecccC---------------CCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 152 KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSM---------------VKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 152 ~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
++ +++++.++.|++||+.++ ..+..+..+.. .+...+++++|+|+|.+|++|+.||.+++|..
T Consensus 613 ~~~~l~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 613 NRYWLCAATEHGIKIWDLESK-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp SSSEEEEEETTEEEEEETTTT-EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCcEEEEEcCCCEEEEECCCC-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 99 888888889999998765 33332221100 01114789999999999999888887777754
No 45
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4e-30 Score=237.22 Aligned_cols=209 Identities=17% Similarity=0.257 Sum_probs=170.2
Q ss_pred CeEEEe-CCCcEEEEec--cCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-------------------
Q 041916 1 YPYIYN-RDGTELHCLK--EHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR------------------- 57 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~--~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------- 57 (359)
+|+||| .+|..+..+. +|.. +++++|+|+|.+||+|+.||.|++||+.+++++..+.
T Consensus 126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sg 205 (420)
T 4gga_A 126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG 205 (420)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEE
Confidence 489999 8999877665 5655 4999999999999999999999999999887665543
Q ss_pred ----------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc----ceEEEeccCCCeEEEEEc
Q 041916 58 ----------------------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA----PLIKMLCHQGPVSALAFH 111 (359)
Q Consensus 58 ----------------------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~----~~~~~~~h~~~v~~i~~~ 111 (359)
+|...+.++.|+|++.++++++.||.|.+|++.+++ .+.....|.+.|.+++|+
T Consensus 206 s~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 285 (420)
T 4gga_A 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285 (420)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEEC
T ss_pred eCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeC
Confidence 455556677778888888888889999999887664 355667899999999999
Q ss_pred CCC-CEEEEE--eCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE--cCCcEEEEcCCCCCCccceeeccc
Q 041916 112 PNG-HLMATS--GKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG--TGSFVQILGDFSGSHNYSRYMGHS 182 (359)
Q Consensus 112 ~~~-~~l~~~--~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~ 182 (359)
|++ .+++++ +.|++|++||++++.++..+ ...+.++.|+|++ +++++ .|+.|+|||+.++ ..+..+.+|.
T Consensus 286 p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH~ 364 (420)
T 4gga_A 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHT 364 (420)
T ss_dssp TTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCS
T ss_pred CCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCCC
Confidence 955 455554 47999999999999988887 5578999999998 55554 5899999998776 6777888886
Q ss_pred CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 183 MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 183 ~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
. .|++++|+|+|.+|++|+.||.+++|.
T Consensus 365 ~----~V~~l~~spdg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 365 S----RVLSLTMSPDGATVASAAADETLRLWR 392 (420)
T ss_dssp S----CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred C----CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6 899999999999998877777555553
No 46
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.2e-30 Score=239.25 Aligned_cols=215 Identities=16% Similarity=0.186 Sum_probs=180.6
Q ss_pred CeEEEe-CCC-c---EEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCC-------eEEEEEecCCCCeEEE
Q 041916 1 YPYIYN-RDG-T---ELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMG-------EIVGNFRTGLGRTDVM 66 (359)
Q Consensus 1 ~v~iwd-~~g-~---~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~ 66 (359)
.|+||+ ... . .+..+.+|.+. ++++|+| ++.+|++|+.||.|++||+.++ .++..+.+|...|.++
T Consensus 58 ~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 137 (402)
T 2aq5_A 58 AFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137 (402)
T ss_dssp CEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEE
T ss_pred EEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEE
Confidence 478999 332 2 34567789887 9999999 8999999999999999999988 6788899999999999
Q ss_pred EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEE--eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c-
Q 041916 67 RVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKM--LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P- 141 (359)
Q Consensus 67 ~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~- 141 (359)
+|+|++ .+|++|+.||.|++||+.+++.+..+ ..|.+.|++++|+|++.+|++++.|+.|++||+++++++..+ .
T Consensus 138 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 217 (402)
T 2aq5_A 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP 217 (402)
T ss_dssp EECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC
Confidence 999998 69999999999999999999999998 789999999999999999999999999999999999988776 2
Q ss_pred --C-CceeEEEcCCc-eEEEE----cCCcEEEEcCCCCCCccceee-cccCCCCcceEEEEEeeCCCEEE-EEcCCCeEE
Q 041916 142 --G-HAKTLDFSQKG-LLAVG----TGSFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRPYEDVLG-IGHSMGWSS 211 (359)
Q Consensus 142 --~-~i~~~~~s~~g-l~~~~----~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~-~~~~dg~~~ 211 (359)
+ .+.+++|+|++ +++++ .|+.|++||+.+......... .+ ...+.+++|+|++.+|+ +|+.||.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~g~~dg~i~ 293 (402)
T 2aq5_A 218 HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT----SSGVLLPFFDPDTNIVYLCGKGDSSIR 293 (402)
T ss_dssp SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC----CSSCEEEEEETTTTEEEEEETTCSCEE
T ss_pred CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccC----CCceeEEEEcCCCCEEEEEEcCCCeEE
Confidence 2 37999999999 55554 789999999877644333332 23 33799999999999886 455678777
Q ss_pred EEEcCCCC
Q 041916 212 ILVPGSGE 219 (359)
Q Consensus 212 i~~~~~~d 219 (359)
+|....+.
T Consensus 294 i~d~~~~~ 301 (402)
T 2aq5_A 294 YFEITSEA 301 (402)
T ss_dssp EEEECSST
T ss_pred EEEecCCC
Confidence 77665444
No 47
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-30 Score=235.44 Aligned_cols=216 Identities=14% Similarity=0.162 Sum_probs=179.2
Q ss_pred CeEEEe-C--CCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-
Q 041916 1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF- 71 (359)
Q Consensus 1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~- 71 (359)
+|+||| . ++..+..+.+|... ++++|+|+ +.+|++|+.||.|++||+.+++ .+..+..|...|.+++|+|+
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 113 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 113 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG
T ss_pred cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC
Confidence 489999 4 56678889999886 99999987 8999999999999999999987 77888889999999999999
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEEcCCce
Q 041916 72 -NGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHP-------------NGHLMATSGKECKIKIWDLRKYE 135 (359)
Q Consensus 72 -~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~-------------~~~~l~~~~~d~~i~iwd~~~~~ 135 (359)
+.+|++++.||.|++||+.++. ....+..|...|++++|+| ++.+|++++.|+.|++||++++.
T Consensus 114 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 114 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 9999999999999999998874 4456678999999999999 69999999999999999998754
Q ss_pred ----eeEec---cCCceeEEEcCC---c--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 136 ----VLQTL---PGHAKTLDFSQK---G--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 136 ----~~~~~---~~~i~~~~~s~~---g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
++..+ .+.|.+++|+|+ + +++++.||.|++||+.++.............+...|++++|+|++.+|++
T Consensus 194 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 194 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence 33344 457899999999 7 77888999999999876532222111111113448999999999999999
Q ss_pred EcCCCeEEEEEcC
Q 041916 204 GHSMGWSSILVPG 216 (359)
Q Consensus 204 ~~~dg~~~i~~~~ 216 (359)
++.||.+.+|...
T Consensus 274 ~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 274 SGGDNKVTLWKEN 286 (379)
T ss_dssp EESSSSEEEEEEE
T ss_pred ecCCCcEEEEeCC
Confidence 8888877777643
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-31 Score=241.19 Aligned_cols=206 Identities=14% Similarity=0.185 Sum_probs=174.2
Q ss_pred CcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCe
Q 041916 9 GTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT--MGEIVGNFRTGLGRTDVMRVNPF--NGVVSLGHSGGT 83 (359)
Q Consensus 9 g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~--~~~l~sg~~dg~ 83 (359)
|..+..+.+|... ++++|+|++.+|++|+.||.|++||+. ++..+..+.+|..+|.+++|+|+ +.+|++|+.||.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 4567788999987 999999999999999999999999998 56778889999999999999987 899999999999
Q ss_pred EEEEeCCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceee--Eec---cCCceeEEEcC---
Q 041916 84 VTMWKPTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVL--QTL---PGHAKTLDFSQ--- 151 (359)
Q Consensus 84 v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~---~~~i~~~~~s~--- 151 (359)
|++||+.++. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+++.... ..+ ...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999886 67777889999999999999 999999999999999999987432 222 56799999999
Q ss_pred ----------Cc--eEEEEcCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeC---CCEEEEEcCCCeEEEE
Q 041916 152 ----------KG--LLAVGTGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPY---EDVLGIGHSMGWSSIL 213 (359)
Q Consensus 152 ----------~g--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~~~i~ 213 (359)
++ +++++.|+.|++||+.++... ...+..|.. .|.+++|+|+ +.+|++++.||.+.+|
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~----~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC----cEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 46 778889999999998665332 234445544 8999999999 8999999999988888
Q ss_pred EcCCC
Q 041916 214 VPGSG 218 (359)
Q Consensus 214 ~~~~~ 218 (359)
....+
T Consensus 237 d~~~~ 241 (379)
T 3jrp_A 237 TQDNE 241 (379)
T ss_dssp EESST
T ss_pred eCCCC
Confidence 76554
No 49
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-30 Score=230.19 Aligned_cols=208 Identities=14% Similarity=0.177 Sum_probs=177.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-----------------
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG----------------- 61 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------------- 61 (359)
.|+||| .++..+..+.+|... .+++|+|++.+|++++.||.|++||+.+++.+..+. +..
T Consensus 55 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 133 (369)
T 3zwl_B 55 SASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAI 133 (369)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEe
Confidence 489999 899999999999987 999999999999999999999999999887666554 222
Q ss_pred -------------------------------------------CeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceEE
Q 041916 62 -------------------------------------------RTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-AAPLIK 97 (359)
Q Consensus 62 -------------------------------------------~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-~~~~~~ 97 (359)
.+.+++|+|++.+|++|+.||.|.+||+.+ ...+..
T Consensus 134 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 213 (369)
T 3zwl_B 134 LDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS 213 (369)
T ss_dssp ECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE
T ss_pred cCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE
Confidence 566666777777788888889999999988 677888
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCC------------
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGS------------ 161 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~------------ 161 (359)
+..|.+.|.+++|+|++.+|++++.|+.|++||+++++.+..+ ...+.+++|+|++ +++++.++
T Consensus 214 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 293 (369)
T 3zwl_B 214 IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEG 293 (369)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC------------
T ss_pred EecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCC
Confidence 8899999999999999999999999999999999999888877 5678999999999 66666666
Q ss_pred --cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 162 --FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 162 --~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+++||..++ .....+..|.. .|++++|+|++++|++++.||.+.+|.
T Consensus 294 ~~~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 294 KFEARFYHKIFE-EEIGRVQGHFG----PLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp -CEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cceeEEEecCCC-cchhheecccC----cEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 8999997766 56667777755 899999999999999988887666654
No 50
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-31 Score=239.83 Aligned_cols=215 Identities=12% Similarity=0.175 Sum_probs=181.1
Q ss_pred CeEEEe-CCCcEEEEecc-----CCC-eEEEEEecC----CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 041916 1 YPYIYN-RDGTELHCLKE-----HGA-VLKLQFLRN----HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN 69 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~-----h~~-~~~l~~s~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 69 (359)
.|+||| .++..+..+.. |.. +++++|+|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+
T Consensus 45 ~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~ 124 (366)
T 3k26_A 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFH 124 (366)
T ss_dssp EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEEC
T ss_pred EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEEC
Confidence 378999 76777666664 334 499999999 6799999999999999999999999999999999999999
Q ss_pred C-CCCEEEEEeCCCeEEEEeCCCCcceEEE---eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe------
Q 041916 70 P-FNGVVSLGHSGGTVTMWKPTTAAPLIKM---LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT------ 139 (359)
Q Consensus 70 p-~~~~l~sg~~dg~v~lwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------ 139 (359)
| ++.+|++|+.||.|++||+.+++.+..+ ..|...|.+++|+|++.+|++++.|+.|++||+++++.+..
T Consensus 125 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 204 (366)
T 3k26_A 125 PRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD 204 (366)
T ss_dssp SSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEE
Confidence 9 8999999999999999999999988888 68999999999999999999999999999999998654322
Q ss_pred -------------------------ccCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCc-------------cceeecc
Q 041916 140 -------------------------LPGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHN-------------YSRYMGH 181 (359)
Q Consensus 140 -------------------------~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~ 181 (359)
....|.+++|+++-+++++.|+.|++||+.+.... ...+..|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 205 YNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp CCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred ecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 24568999999333888889999999997665331 3334444
Q ss_pred cCCCCcceEEEEEeeC--CCEEEEEcCCCeEEEEEcCCCC
Q 041916 182 SMVKGYQIGKVSFRPY--EDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 182 ~~~~~~~v~~~~~~p~--~~~l~~~~~dg~~~i~~~~~~d 219 (359)
.. .|++++|+|+ +.+|++|+.||.+.+|....+.
T Consensus 285 ~~----~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 285 QC----DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED 320 (366)
T ss_dssp SC----CSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred CC----cEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence 33 7999999999 9999999999888888765543
No 51
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=4.1e-31 Score=238.16 Aligned_cols=210 Identities=16% Similarity=0.121 Sum_probs=177.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~ 74 (359)
+|+||| .++..+..+.+|... .+++|+| ++.+|++|+.||.|++||+.+++.+..+ ..|...|.+++|+|++.+
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence 378999 889999999999887 9999999 8999999999999999999999999888 689999999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEe----------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeE
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKML----------------------------CHQGPVSALAFHPNGHLMATSGKECKI 126 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~----------------------------~h~~~v~~i~~~~~~~~l~~~~~d~~i 126 (359)
|++|+.||.|++||+++++....+. .|.+.|.+++|+ +.+|++++.|+.|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence 9999999999999998775543333 399999999998 7799999999999
Q ss_pred EEEEcCCcee--------------eEec---cCCceeEEEcCC--c--eEEEEcCCcEEEEcCCCCCCc---cceeeccc
Q 041916 127 KIWDLRKYEV--------------LQTL---PGHAKTLDFSQK--G--LLAVGTGSFVQILGDFSGSHN---YSRYMGHS 182 (359)
Q Consensus 127 ~iwd~~~~~~--------------~~~~---~~~i~~~~~s~~--g--l~~~~~d~~i~i~d~~~~~~~---~~~~~~~~ 182 (359)
++||++++.. +..+ ...|.+++|+|+ + +++++.||.|++||+.++... ...+..|.
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 9999987643 4444 346899999999 8 666778999999998776322 12444542
Q ss_pred CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 183 MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 183 ~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+...|++++|+|++++|++|+.||.+.+|.
T Consensus 334 --~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 334 --CGAAIRQTSFSRDSSILIAVCDDASIWRWD 363 (366)
T ss_dssp --CCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred --cCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence 245899999999999999988888777765
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.98 E-value=1.4e-29 Score=225.47 Aligned_cols=207 Identities=13% Similarity=0.145 Sum_probs=179.6
Q ss_pred CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
.|++|| .++. ....+..|... .+++|+|++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++.+|+
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence 378999 6666 56778888876 9999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG- 153 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g- 153 (359)
+++.||.|++||+++++.+..+ .+...+.+++|+|++.+|++++.|+.|++||++++...... ...+.+++|+|++
T Consensus 200 ~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 278 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSS
T ss_pred EEecCCcEEEEECCCCceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCC
Confidence 9999999999999998877776 47888999999999999999999999999999988765433 5679999999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+++++.||.|++||+.++. .. ....|.. .|.+++|+|++++|++++.||.+.+|.
T Consensus 279 ~l~~~~~dg~i~~~~~~~~~-~~-~~~~~~~----~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 279 WFVSTGKDNLLNAWRTPYGA-SI-FQSKESS----SVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEEEEETTSEEEEEETTTCC-EE-EEEECSS----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred EEEEecCCCcEEEEECCCCe-EE-EEecCCC----cEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 7778889999999987763 33 2233433 899999999999999988888777664
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.5e-31 Score=241.85 Aligned_cols=210 Identities=15% Similarity=0.227 Sum_probs=177.2
Q ss_pred CeEEEe-CCCc---EEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcCC
Q 041916 1 YPYIYN-RDGT---ELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd-~~g~---~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~ 71 (359)
+|+||| .++. .+..+. |.. +++++|+|++.+|++|+.||.|++||+.+ ...+..+..|...|.+++|+|+
T Consensus 46 ~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 46 SLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp CCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS
T ss_pred eEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCC
Confidence 478999 5554 444444 544 59999999999999999999999999987 4588889999999999999998
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCc------ceEE---EeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 72 -NGVVSLGHSGGTVTMWKPTTAA------PLIK---MLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 72 -~~~l~sg~~dg~v~lwd~~~~~------~~~~---~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
+.+|++|+.||.|++||+.++. .... +..|.+.|.+++|+|+ +.+|++++.|+.|++||+++++++..+
T Consensus 125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 204 (416)
T 2pm9_A 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL 204 (416)
T ss_dssp STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence 8999999999999999999876 3332 3578999999999998 789999999999999999999887776
Q ss_pred c---------CCceeEEEcCCc---eEEEEcCC---cEEEEcCCCCCCccceee-cccCCCCcceEEEEEee-CCCEEEE
Q 041916 141 P---------GHAKTLDFSQKG---LLAVGTGS---FVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRP-YEDVLGI 203 (359)
Q Consensus 141 ~---------~~i~~~~~s~~g---l~~~~~d~---~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p-~~~~l~~ 203 (359)
. ..+.+++|+|++ +++++.|+ .|++||+.++......+. .|.. .|.+++|+| ++.+|++
T Consensus 205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQK----GILSLDWCHQDEHLLLS 280 (416)
T ss_dssp CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSS----CEEEEEECSSCSSCEEE
T ss_pred eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccC----ceeEEEeCCCCCCeEEE
Confidence 2 358999999997 66677777 999999887656666666 6655 899999999 9999999
Q ss_pred EcCCCeEEEEEc
Q 041916 204 GHSMGWSSILVP 215 (359)
Q Consensus 204 ~~~dg~~~i~~~ 215 (359)
++.||.+.+|..
T Consensus 281 ~~~dg~v~~wd~ 292 (416)
T 2pm9_A 281 SGRDNTVLLWNP 292 (416)
T ss_dssp EESSSEEEEECS
T ss_pred EeCCCCEEEeeC
Confidence 999997776543
No 54
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.7e-30 Score=229.60 Aligned_cols=201 Identities=11% Similarity=0.138 Sum_probs=167.9
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEE
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVT 85 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~ 85 (359)
..+.+|.+. ++++|+|++.+|++|+.||.|++||+.++ .....+.+|..+|.+++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346789886 99999999999999999999999999876 46778889999999999999 689999999999999
Q ss_pred EEeCCCC---------cceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCcee------------------
Q 041916 86 MWKPTTA---------APLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEV------------------ 136 (359)
Q Consensus 86 lwd~~~~---------~~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~------------------ 136 (359)
+||+.++ .++..+..|.+.|.+++|+|+ +.+|++++.|+.|++||+++++.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 457778899999999999999 99999999999999999875431
Q ss_pred ------------------------------------------eEec---cCCceeEEEcCCc------eEEEEcCCcEEE
Q 041916 137 ------------------------------------------LQTL---PGHAKTLDFSQKG------LLAVGTGSFVQI 165 (359)
Q Consensus 137 ------------------------------------------~~~~---~~~i~~~~~s~~g------l~~~~~d~~i~i 165 (359)
+..+ .+.|.+++|+|++ +++++.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 2222 3468999999995 778889999999
Q ss_pred EcCCCCC---------------------------------------------CccceeecccCCCCcceEEEEEeeCCCE
Q 041916 166 LGDFSGS---------------------------------------------HNYSRYMGHSMVKGYQIGKVSFRPYEDV 200 (359)
Q Consensus 166 ~d~~~~~---------------------------------------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 200 (359)
||+..+. ..+..+.+|.. .|++++|+|++++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG----EVWSVSWNLTGTI 320 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSS----CEEEEEECSSSCC
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccc----cEEEEEEcCCCCE
Confidence 9976531 22233444543 8999999999999
Q ss_pred EEEEcCCCeEEEEEcCC
Q 041916 201 LGIGHSMGWSSILVPGS 217 (359)
Q Consensus 201 l~~~~~dg~~~i~~~~~ 217 (359)
|++|+.||.+.+|....
T Consensus 321 l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATY 337 (351)
T ss_dssp EEEEETTSCEEEEEECT
T ss_pred EEEecCCCcEEEEecCc
Confidence 99988888777776543
No 55
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=4.8e-31 Score=234.20 Aligned_cols=200 Identities=12% Similarity=0.159 Sum_probs=163.1
Q ss_pred EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 041916 14 CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNP--FNGVVSLGHSGGTVTMWK 88 (359)
Q Consensus 14 ~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp--~~~~l~sg~~dg~v~lwd 88 (359)
.+.+|.+. ++++|+|+|.+||+|+.|++|++||+.++. ++..+.+|.++|.+++|+| ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 45688887 999999999999999999999999998875 4678899999999999986 488999999999999999
Q ss_pred CCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCcee---eEec---cCCceeEEEcCC------
Q 041916 89 PTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEV---LQTL---PGHAKTLDFSQK------ 152 (359)
Q Consensus 89 ~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~---~~~~---~~~i~~~~~s~~------ 152 (359)
+.++. ....+.+|.+.|++++|+|+ +.+|++|+.|++|++||++.... ...+ ...+.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98874 56677899999999999997 88999999999999999987532 2333 346889999997
Q ss_pred -----------c--eEEEEcCCcEEEEcCCCCC--CccceeecccCCCCcceEEEEEeeCC----CEEEEEcCCCeEEEE
Q 041916 153 -----------G--LLAVGTGSFVQILGDFSGS--HNYSRYMGHSMVKGYQIGKVSFRPYE----DVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 -----------g--l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~----~~l~~~~~dg~~~i~ 213 (359)
+ +++++.|+.|++||+.... .....+.+|.. .|.+++|+|++ .+|++|+.||.+.+|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~----~V~~v~~sp~~~~~~~~las~s~D~~v~iw 243 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSD----WVRDVAWAPSIGLPTSTIASCSQDGRVFIW 243 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSS----CEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCC----ceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence 3 6778889999999975442 23445666655 89999999987 789999999888888
Q ss_pred EcCC
Q 041916 214 VPGS 217 (359)
Q Consensus 214 ~~~~ 217 (359)
....
T Consensus 244 ~~~~ 247 (316)
T 3bg1_A 244 TCDD 247 (316)
T ss_dssp ECSS
T ss_pred EccC
Confidence 6543
No 56
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=6.4e-30 Score=231.09 Aligned_cols=211 Identities=15% Similarity=0.140 Sum_probs=181.5
Q ss_pred CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCE
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF--RTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~sp~~~~ 74 (359)
.|+||| .++. .+..+.+|... ++++|+|++.+|++++.||.|++||+.+++....+ ..|...|.+++|+|++.+
T Consensus 31 ~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 110 (372)
T 1k8k_C 31 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 110 (372)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE
T ss_pred EEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE
Confidence 378999 6666 88899999887 99999999999999999999999999988755444 568899999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCcc---eEEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC------------------
Q 041916 75 VSLGHSGGTVTMWKPTTAAP---LIKM-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR------------------ 132 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~---~~~~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~------------------ 132 (359)
|++|+.||.|++||+..+.. ...+ ..|...|++++|+|++.+|++++.|+.|++||++
T Consensus 111 l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (372)
T 1k8k_C 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 190 (372)
T ss_dssp EEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred EEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence 99999999999999988764 2333 4789999999999999999999999999999954
Q ss_pred CceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 133 KYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 133 ~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
.+.++..+ .+.+.+++|+|++ +++++.|+.|++||+.++ ..+..+..|.. +|.+++|+|++.+|++| .|
T Consensus 191 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d 264 (372)
T 1k8k_C 191 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-MAVATLASETL----PLLAVTFITESSLVAAG-HD 264 (372)
T ss_dssp TTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT-TEEEEEECSSC----CEEEEEEEETTEEEEEE-TT
T ss_pred hhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC-ceeEEEccCCC----CeEEEEEecCCCEEEEE-eC
Confidence 56777777 4578999999999 778889999999998766 56666776654 89999999999988887 78
Q ss_pred CeEEEEEcCC
Q 041916 208 GWSSILVPGS 217 (359)
Q Consensus 208 g~~~i~~~~~ 217 (359)
|.+.+|....
T Consensus 265 ~~i~i~~~~~ 274 (372)
T 1k8k_C 265 CFPVLFTYDS 274 (372)
T ss_dssp SSCEEEEEET
T ss_pred CeEEEEEccC
Confidence 8888887655
No 57
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=5e-30 Score=232.24 Aligned_cols=188 Identities=10% Similarity=0.043 Sum_probs=153.1
Q ss_pred eEEEEEecCCCEEEEE--ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-
Q 041916 21 VLKLQFLRNHFLLASI--NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK- 97 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~- 97 (359)
+.+++|||||++|+++ +.|++|+|||+.+++++..+. |.+.|.+++|+|+|.+|++++.++ +.+|+..++..+..
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~ 213 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARK 213 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeee
Confidence 3789999999987654 468999999999999998886 678899999999999999998665 56666666665543
Q ss_pred -EeccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCcee----eEec---cCCceeEEEcCCc--eEEEEcCCcE
Q 041916 98 -MLCHQGPVSALAFHPNGHLMATSGKEC----KIKIWDLRKYEV----LQTL---PGHAKTLDFSQKG--LLAVGTGSFV 163 (359)
Q Consensus 98 -~~~h~~~v~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~~----~~~~---~~~i~~~~~s~~g--l~~~~~d~~i 163 (359)
...|...|++++|+|++.++++++.|+ .+++||+..... ...+ ...|++++|||+| +++++.|+.|
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V 293 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSI 293 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCE
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEE
Confidence 346888999999999999999999887 688999887543 2223 4579999999999 6778899999
Q ss_pred EEEcCCCCCCccce-eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 164 QILGDFSGSHNYSR-YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 164 ~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+|||+.++ .++.. +.+|.. +|++++|+|||++|++|+.|+++++|..
T Consensus 294 ~iwd~~~~-~~~~~~~~gH~~----~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 294 ALVKLKDL-SMSKIFKQAHSF----AITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp EEEETTTT-EEEEEETTSSSS----CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred EEEECCCC-cEEEEecCcccC----CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 99998776 44444 456765 8999999999999999888876666653
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=8.9e-30 Score=231.75 Aligned_cols=201 Identities=9% Similarity=0.033 Sum_probs=171.2
Q ss_pred CCCcEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcC-CCCEEEEEeCC
Q 041916 7 RDGTELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNP-FNGVVSLGHSG 81 (359)
Q Consensus 7 ~~g~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp-~~~~l~sg~~d 81 (359)
........+.+|... ++++|+|++ .+|++|+.||.|++||+.++.....+. +|...|.+++|+| ++.+|++|+.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 456677888999887 999999998 999999999999999999888777765 5999999999999 67999999999
Q ss_pred CeEEEEeCCCCcceEEEecc---CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--
Q 041916 82 GTVTMWKPTTAAPLIKMLCH---QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-- 153 (359)
Q Consensus 82 g~v~lwd~~~~~~~~~~~~h---~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-- 153 (359)
|.|++||+.. ..+..+..+ ...|.+++|+|++.+|++++.|+.|++||++ +.++..+ .+.|.+++|+|++
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 218 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDW 218 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTT
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCC
Confidence 9999999985 555555544 4789999999999999999999999999995 5666666 4679999999998
Q ss_pred -eEEEEcCCcEEEEcCCCCC---CccceeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEE
Q 041916 154 -LLAVGTGSFVQILGDFSGS---HNYSRYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~ 214 (359)
+++++.|+.|++||+.+.. .....+ .|.. .|.+++|+| ++.+|++++.||.+.+|.
T Consensus 219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~----~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 219 LMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEK----PVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp EEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSS----CEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred EEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCC----ceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 6778889999999987632 222223 4544 899999999 999999999999988875
No 59
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=3.4e-30 Score=235.22 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=177.9
Q ss_pred CeEEEe-CCCcE-----EEEeccC------CCeEEEEEe----cCCCE-EEEEecCCeEEEEECCC------CeEEE---
Q 041916 1 YPYIYN-RDGTE-----LHCLKEH------GAVLKLQFL----RNHFL-LASINKFGQLRYQDVTM------GEIVG--- 54 (359)
Q Consensus 1 ~v~iwd-~~g~~-----~~~l~~h------~~~~~l~~s----~~~~~-l~s~~~dg~i~iwd~~~------~~~~~--- 54 (359)
+|++|| .++.. +..+..| ..+.+++|+ |++.+ |++++.||.|++||+.+ +..+.
T Consensus 92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 171 (397)
T 1sq9_A 92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 171 (397)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccC
Confidence 488999 66765 8888888 345999999 99999 99999999999999998 66555
Q ss_pred --EEe-------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec---c---CCCeEEEEEcCCCCEEEE
Q 041916 55 --NFR-------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC---H---QGPVSALAFHPNGHLMAT 119 (359)
Q Consensus 55 --~~~-------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~---h---~~~v~~i~~~~~~~~l~~ 119 (359)
.+. .|...|.+++|+|++ +|++|+.||.|.+||+++++++..+.. | ...|.+++|+|++.+|++
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~ 250 (397)
T 1sq9_A 172 TLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 250 (397)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred cceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence 664 488899999999999 999999999999999999999999998 9 999999999999999999
Q ss_pred EeCC---CeEEEEEcCCceeeEecc----------------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCcccee
Q 041916 120 SGKE---CKIKIWDLRKYEVLQTLP----------------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRY 178 (359)
Q Consensus 120 ~~~d---~~i~iwd~~~~~~~~~~~----------------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~ 178 (359)
++.| +.|++||+++++++..+. ..|.+++|+|++ +++++.|+.|++||+.++ ..+..+
T Consensus 251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~ 329 (397)
T 1sq9_A 251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTL 329 (397)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEE
Confidence 9999 999999999988877663 358999999999 777888999999998776 555666
Q ss_pred e------cc------------cCCCCcceEEEEEeeCC----------CEEEEEcCCCeEEEEEcC
Q 041916 179 M------GH------------SMVKGYQIGKVSFRPYE----------DVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 179 ~------~~------------~~~~~~~v~~~~~~p~~----------~~l~~~~~dg~~~i~~~~ 216 (359)
. .| .. +...|++++|+|++ .+|++|+.||.+.+|...
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSL-AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBC-SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ecccCcccchhhhhccccccccc-cCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 5 44 00 13489999999998 688888888777776543
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.6e-29 Score=235.95 Aligned_cols=203 Identities=14% Similarity=0.210 Sum_probs=180.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN--PFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~ 76 (359)
+|++|| .+++.+..+.+|.+. ++++|+|++ +|++|+.||+|++||+.+++++..+.+|.+.|.+++|+ +++.+|+
T Consensus 143 ~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 143 MIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred cEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence 589999 899999999999987 999999988 89999999999999999999999999999999999998 5778999
Q ss_pred EEeCCCeEEEEeCCCCcc-----------------------eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916 77 LGHSGGTVTMWKPTTAAP-----------------------LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~-----------------------~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
+|+.||.|++||+.++.. +..+.+|...|.++ ++++.++++++.|+.|++||+++
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~ 299 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQ 299 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTT
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999987653 44566888888877 57889999999999999999999
Q ss_pred ceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 134 YEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 134 ~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
++++..+ ...|.+++|+|++ +++++.||.|++||+.++ ..+..+.+|.. .|.+++|+ +.+|++|+.||
T Consensus 300 ~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~----~v~~~~~~--~~~l~s~s~dg 372 (464)
T 3v7d_B 300 MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG-ELMYTLQGHTA----LVGLLRLS--DKFLVSAAADG 372 (464)
T ss_dssp TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-EEEEEECCCSS----CEEEEEEC--SSEEEEEETTS
T ss_pred CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCC----cEEEEEEc--CCEEEEEeCCC
Confidence 9998887 4568999999998 788889999999998776 66677777765 89999997 58999999999
Q ss_pred eEEEE
Q 041916 209 WSSIL 213 (359)
Q Consensus 209 ~~~i~ 213 (359)
.+.+|
T Consensus 373 ~v~vw 377 (464)
T 3v7d_B 373 SIRGW 377 (464)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 87775
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=5.4e-30 Score=255.09 Aligned_cols=212 Identities=17% Similarity=0.201 Sum_probs=191.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||| .+|..+..+..|... ++++|+|++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|
T Consensus 36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 115 (814)
T 3mkq_A 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE
Confidence 378999 899999999999887 999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCC-cceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcC-
Q 041916 79 HSGGTVTMWKPTTA-APLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQ- 151 (359)
Q Consensus 79 ~~dg~v~lwd~~~~-~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~- 151 (359)
+.||.|.+||+.++ .....+.+|...|.+++|+| ++.+|++++.||+|++||+.++.+...+ ...+.+++|+|
T Consensus 116 ~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195 (814)
T ss_dssp ETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS
T ss_pred cCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC
Confidence 99999999999887 56677889999999999999 8999999999999999999988766655 26789999999
Q ss_pred -Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 152 -KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 152 -~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
++ +++++.||.|++||+.++ .....+..|.. .|.+++|+|++.+|++|+.||.+.+|....
T Consensus 196 ~~~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 196 PDKPYMITASDDLTIKIWDYQTK-SCVATLEGHMS----NVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TTCCEEEEECTTSEEEEEETTTT-EEEEEEECCSS----CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CCCCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 77 777788999999998765 55666666655 899999999999999999999988887654
No 62
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=232.83 Aligned_cols=213 Identities=16% Similarity=0.166 Sum_probs=178.0
Q ss_pred CeEEEe-CCCcEEEEe-ccCCCe-EEEEEecC---CCEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEEEE-----
Q 041916 1 YPYIYN-RDGTELHCL-KEHGAV-LKLQFLRN---HFLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVMRV----- 68 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l-~~h~~~-~~l~~s~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~----- 68 (359)
+|+||| .++...... .+|... .+++|+|+ +.+|++|+.||.|++||+.+++ .+..+.+|...|.+++|
T Consensus 45 ~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 124 (357)
T 3i2n_A 45 VIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLG 124 (357)
T ss_dssp EEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGG
T ss_pred EEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccc
Confidence 378999 777765433 256655 99999998 6999999999999999999988 88999999999999954
Q ss_pred -cCCCCEEEEEeCCCeEEEEeCCCCc-ceEEEeccCC----CeEEEE----EcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916 69 -NPFNGVVSLGHSGGTVTMWKPTTAA-PLIKMLCHQG----PVSALA----FHPNGHLMATSGKECKIKIWDLRKYEVLQ 138 (359)
Q Consensus 69 -sp~~~~l~sg~~dg~v~lwd~~~~~-~~~~~~~h~~----~v~~i~----~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 138 (359)
+|++.+|++|+.||.|++||+.++. ++..+..|.+ .|.+++ |+|++.+|++++.|+.|++||+++++...
T Consensus 125 ~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~ 204 (357)
T 3i2n_A 125 IGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW 204 (357)
T ss_dssp CC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred cCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee
Confidence 7889999999999999999999887 7788876665 799998 78899999999999999999999988755
Q ss_pred ec--cCCceeEEEcC---Cc--eEEEEcCCcEEEEcCCCCCCccceee-----cccCCCCcceEEEEEeeCCC-EEEEEc
Q 041916 139 TL--PGHAKTLDFSQ---KG--LLAVGTGSFVQILGDFSGSHNYSRYM-----GHSMVKGYQIGKVSFRPYED-VLGIGH 205 (359)
Q Consensus 139 ~~--~~~i~~~~~s~---~g--l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~p~~~-~l~~~~ 205 (359)
.. ...+.+++|+| ++ +++++.||.|++||+.++ .....+. .|.. .|++++|+|++. +|++|+
T Consensus 205 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~ 279 (357)
T 3i2n_A 205 ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKS----TVWQVRHLPQNRELFLTAG 279 (357)
T ss_dssp EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSS----CEEEEEEETTEEEEEEEEE
T ss_pred ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcC----CEEEEEECCCCCcEEEEEe
Confidence 54 67899999999 77 778889999999997665 3444333 5544 899999999998 899999
Q ss_pred CCCeEEEEEcCCC
Q 041916 206 SMGWSSILVPGSG 218 (359)
Q Consensus 206 ~dg~~~i~~~~~~ 218 (359)
.||.+.+|.....
T Consensus 280 ~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 280 GAGGLHLWKYEYP 292 (357)
T ss_dssp TTSEEEEEEEECC
T ss_pred CCCcEEEeecCCC
Confidence 9998888876543
No 63
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=221.76 Aligned_cols=209 Identities=16% Similarity=0.217 Sum_probs=172.3
Q ss_pred CeEEEe-CCCcEEEEec--cCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-------------------
Q 041916 1 YPYIYN-RDGTELHCLK--EHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR------------------- 57 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~--~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------- 57 (359)
+|+||| .+|+++..+. +|... ++++|+|++++|++|+.||+|++||+.+++++..+.
T Consensus 46 tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~ 125 (318)
T 4ggc_A 46 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSG 125 (318)
T ss_dssp EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred EEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEE
Confidence 489999 8999888775 55554 999999999999999999999999999887665533
Q ss_pred ----------------------cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc----eEEEeccCCCeEEEEEc
Q 041916 58 ----------------------TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP----LIKMLCHQGPVSALAFH 111 (359)
Q Consensus 58 ----------------------~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~----~~~~~~h~~~v~~i~~~ 111 (359)
+|...+.+++|++++.+|++++.||.|++||+.+++. ......|.+.|.+++++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 205 (318)
T 4ggc_A 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205 (318)
T ss_dssp ETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEEC
T ss_pred ecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEec
Confidence 4556677888999999999999999999999987653 44556788899999999
Q ss_pred CCCCE-E--EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE--cCCcEEEEcCCCCCCccceeeccc
Q 041916 112 PNGHL-M--ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG--TGSFVQILGDFSGSHNYSRYMGHS 182 (359)
Q Consensus 112 ~~~~~-l--~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~ 182 (359)
|++.. + ++++.+++|++||.+........ ...+..+.|+|++ +++++ .|+.|++||+.++ ..+..+.+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~ 284 (318)
T 4ggc_A 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGHT 284 (318)
T ss_dssp TTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCCS
T ss_pred CCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCCC
Confidence 96653 3 45667899999999988776655 5678999999998 55544 6899999998776 6777888886
Q ss_pred CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 183 MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 183 ~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
. .|++++|+|++.+|++|+.||.+++|.
T Consensus 285 ~----~V~~l~~spdg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 285 S----RVLSLTMSPDGATVASAAADETLRLWR 312 (318)
T ss_dssp S----CEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred C----CEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence 6 899999999999999988887666664
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.9e-29 Score=231.30 Aligned_cols=211 Identities=18% Similarity=0.224 Sum_probs=179.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
.|+||| .++..+..+.+|... .+++|+ +.+|++|+.||.|++||+. .+..+..+..|.+.|.+++|+|++.+|++
T Consensus 157 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 157 LVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 489999 889999999999887 999994 5799999999999999998 56678889999999999999999999999
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEe--CCCeEEEEEcCCceeeEec--cCCceeEEEcCC
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSG--KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQK 152 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~ 152 (359)
|+.||.|++||+.++.++..+..|...|.+++|+|++. ++++++ .|+.|++||+++++++..+ ...+.+++|+|+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~ 314 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH 314 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCC
Confidence 99999999999999999999999999999999999764 566655 6999999999999988877 567999999999
Q ss_pred c--eEEEE--cCCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 153 G--LLAVG--TGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 153 g--l~~~~--~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
+ +++++ .||.|++||+.++.. ....+.+|.. .|.+++|+|++.+|++++.||.+.+|....
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDT----RVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSS----CCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCC----CEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 9 55543 689999999766421 1223445544 899999999999999988887766665443
No 65
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=8.4e-30 Score=231.92 Aligned_cols=207 Identities=15% Similarity=0.163 Sum_probs=168.3
Q ss_pred CeEEEeCCCcEEEEeccCC---C-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 041916 1 YPYIYNRDGTELHCLKEHG---A-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VV 75 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~---~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 75 (359)
+|++||..+..+..+..|. . +.+++|+|++.+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|++. +|
T Consensus 142 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 142 ATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence 3789995567777776654 4 499999999999999999999999999 5888999999999999999999998 99
Q ss_pred EEEeCCCeEEEEeCCC----CcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEecc---------
Q 041916 76 SLGHSGGTVTMWKPTT----AAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTLP--------- 141 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~----~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------- 141 (359)
++|+.||.|++||+++ +.++..+ .|.+.|++++|+| ++.+|++++.|+.|++||++++..+..+.
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 9999999999999987 4455555 7999999999999 99999999999999999999876544441
Q ss_pred -----------CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 142 -----------GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 142 -----------~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
+.+..++|+|+| + +++.|+.|++||+.++ ..+..+..+. +...+..++|+|++.+|++|+ ||.
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~-~~~~~l~~~~--~~~~~~~~~~s~~g~~l~s~s-d~~ 374 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSG-GLVHQLRDPN--AAGIISLNKFSPTGDVLASGM-GFN 374 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTC-CEEEEECBTT--BCSCCCEEEECTTSSEEEEEE-TTE
T ss_pred ccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCC-ceeeeecCCC--CCceEEEEEEecCccEEEEec-CCc
Confidence 122335555555 4 5567899999998776 5566666542 233678889999999998885 776
Q ss_pred EEEEE
Q 041916 210 SSILV 214 (359)
Q Consensus 210 ~~i~~ 214 (359)
+.+|.
T Consensus 375 i~iw~ 379 (383)
T 3ei3_B 375 ILIWN 379 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66665
No 66
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.1e-29 Score=235.17 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=174.0
Q ss_pred CeEEEe-CC----------CcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeE-------EEEEecCC
Q 041916 1 YPYIYN-RD----------GTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEI-------VGNFRTGL 60 (359)
Q Consensus 1 ~v~iwd-~~----------g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~ 60 (359)
.|+||| .+ +..+..+.+|... ++++|+|++. +|++|+.||.|++||+.++.. ...+..|.
T Consensus 152 ~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~ 231 (430)
T 2xyi_A 152 DVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHT 231 (430)
T ss_dssp CEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCS
T ss_pred cEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCC
Confidence 488999 44 5678888999887 9999999987 999999999999999987422 45677899
Q ss_pred CCeEEEEEcC-CCCEEEEEeCCCeEEEEeCCCC---cceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCC-c
Q 041916 61 GRTDVMRVNP-FNGVVSLGHSGGTVTMWKPTTA---APLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRK-Y 134 (359)
Q Consensus 61 ~~v~~~~~sp-~~~~l~sg~~dg~v~lwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~-~ 134 (359)
..|.+++|+| ++.+|++++.||.|++||++++ .++..+..|...|++++|+|++. +|++|+.||.|++||+++ .
T Consensus 232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~ 311 (430)
T 2xyi_A 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK 311 (430)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC
Confidence 9999999999 6789999999999999999987 57788889999999999999887 689999999999999998 4
Q ss_pred eeeEec---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCc----------cceeecccCCCCcceEEEEEeeCC
Q 041916 135 EVLQTL---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN----------YSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 135 ~~~~~~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
.++..+ .+.|.+++|+|++ +++++.|+.|++||+...... ...+..+.. +...|.+++|+|++
T Consensus 312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG-HTAKISDFSWNPNE 390 (430)
T ss_dssp SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC-CSSCEEEEEECSSS
T ss_pred CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC-CCCCceEEEECCCC
Confidence 556655 5679999999988 667788999999998663211 122223322 34489999999999
Q ss_pred C-EEEEEcCCCeEEEEE
Q 041916 199 D-VLGIGHSMGWSSILV 214 (359)
Q Consensus 199 ~-~l~~~~~dg~~~i~~ 214 (359)
. +|++++.||.+.+|.
T Consensus 391 ~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp TTEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCEEEeE
Confidence 8 777777766555554
No 67
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=226.87 Aligned_cols=201 Identities=16% Similarity=0.180 Sum_probs=178.2
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
....+.+|... ++++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 45678899987 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCcee-----------eEec---cC--CceeEE
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYEV-----------LQTL---PG--HAKTLD 148 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~-----------~~~~---~~--~i~~~~ 148 (359)
.+++.+..+. +...|.+++|+|++.+|++++.+ +.|.+||+..... +..+ .+ .+.+++
T Consensus 104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (369)
T 3zwl_B 104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG 182 (369)
T ss_dssp TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence 9999888887 88999999999999999999999 9999999976532 1111 22 789999
Q ss_pred EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
|+|++ +++++.||.|++||+.+.......+..|.. .|.+++|+|++.+|++++.||.+.+|...
T Consensus 183 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 183 WSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK----SISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS----CEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC----ceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 99999 777888999999998775566677777755 89999999999999999999988887654
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=2.5e-29 Score=261.32 Aligned_cols=209 Identities=15% Similarity=0.216 Sum_probs=184.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP--FNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~ 76 (359)
+|+||| .++..+..+.+|... ++++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++.+++
T Consensus 638 ~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 717 (1249)
T 3sfz_A 638 TLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717 (1249)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred eEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence 589999 899999999999987 9999999999999999999999999999999999999999999999999 456899
Q ss_pred EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----------------
Q 041916 77 LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---------------- 140 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---------------- 140 (359)
+|+.||.|++||+.++.++..+.+|.+.|++++|+|++.+|++++.||+|++||++++.....+
T Consensus 718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp EEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred EEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence 9999999999999999999999999999999999999999999999999999999876543221
Q ss_pred ------------------------------------------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc
Q 041916 141 ------------------------------------------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS 176 (359)
Q Consensus 141 ------------------------------------------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~ 176 (359)
.+.+.+++|+|++ +++++.++.|++||+.++ ....
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~ 876 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVA 876 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEE
T ss_pred cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceee
Confidence 2346778888888 666677888999987665 5556
Q ss_pred eeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 177 RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 177 ~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+.+|.. .|++++|+|++.+|++++.||.+.+|.
T Consensus 877 ~~~~h~~----~v~~v~~spdg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 877 DCRGHLS----WVHGVMFSPDGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp EECCCSS----CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ecCCCcc----ceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 6666655 899999999999999999999888774
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-29 Score=232.00 Aligned_cols=210 Identities=12% Similarity=0.164 Sum_probs=186.8
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC---------------eE
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR---------------TD 64 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------------v~ 64 (359)
.|+|||.++..+..+..|... .+++|+|++.+|++++.|+.|++||+.+++.+..+..+... +.
T Consensus 131 ~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 131 ELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp CEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS
T ss_pred eEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee
Confidence 489999889999999999887 99999999999999999999999999999999999888776 99
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---c
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---P 141 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~ 141 (359)
+++|+|++ .+++++.||.|.+||+.++.++..+..|...|.+++|+|++.+|++++.|+.|++||+++++++..+ .
T Consensus 211 ~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 289 (425)
T 1r5m_A 211 DVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS 289 (425)
T ss_dssp CCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCS
T ss_pred EEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCC
Confidence 99999975 5888999999999999999999999999999999999999999999999999999999998877776 4
Q ss_pred CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 142 GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 142 ~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
..+.+++|+|++ +++++.|+.|++||+.++ .....+..|.. .|.+++|+|++.+|++++.||.+.+|...
T Consensus 290 ~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 290 QSIVSASWVGDDKVISCSMDGSVRLWSLKQN-TLLALSIVDGV----PIFAGRISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp SCEEEEEEETTTEEEEEETTSEEEEEETTTT-EEEEEEECTTC----CEEEEEECTTSSEEEEEETTSCEEEEECH
T ss_pred ccEEEEEECCCCEEEEEeCCCcEEEEECCCC-cEeEecccCCc----cEEEEEEcCCCCEEEEEECCCeEEEEECC
Confidence 578999999999 888899999999998766 55666666654 89999999999999999988877777653
No 70
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=1.7e-29 Score=251.57 Aligned_cols=216 Identities=10% Similarity=0.136 Sum_probs=188.6
Q ss_pred EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 11 ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 11 ~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
..+.+.+|.+. ++++|+|++.+|++|+.||.|++||+.++..+..+..|.++|.+++|+|++.+|++|+.||.|.+||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45778889886 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc-eeeEec---cCCceeEEEcC-Cc--eEEEEcCCc
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY-EVLQTL---PGHAKTLDFSQ-KG--LLAVGTGSF 162 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~~~~---~~~i~~~~~s~-~g--l~~~~~d~~ 162 (359)
.+++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++ .....+ .+.+.+++|+| ++ +++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 164 (814)
T 3mkq_A 85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT 164 (814)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCe
Confidence 999999999999999999999999999999999999999999986 555555 46799999999 66 778889999
Q ss_pred EEEEcCCCCCCccceeecccCCCCcceEEEEEee--CCCEEEEEcCCCeEEE----------------------------
Q 041916 163 VQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP--YEDVLGIGHSMGWSSI---------------------------- 212 (359)
Q Consensus 163 i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~l~~~~~dg~~~i---------------------------- 212 (359)
|++||+..+ .....+..+ +...+.+++|+| ++.+|++|+.+|.+.+
T Consensus 165 v~vwd~~~~-~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 165 VKVWSLGQS-TPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp EEEEETTCS-SCSEEEECC---CTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS
T ss_pred EEEEECCCC-cceeEEecC---CCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC
Confidence 999998665 344444444 223799999999 9999999999996655
Q ss_pred --EEcCCCCCccccccCCCc
Q 041916 213 --LVPGSGEPNFDSWVANPF 230 (359)
Q Consensus 213 --~~~~~~d~~~~~~~~~~~ 230 (359)
+++++.|+.+++|+....
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~ 260 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTY 260 (814)
T ss_dssp SEEEEEETTSCEEEEETTTC
T ss_pred CEEEEEeCCCeEEEEECCCC
Confidence 355666888888887643
No 71
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=227.06 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=167.6
Q ss_pred CCCcEEEEeccCCCe-EEEEEecC---CCEEEEEecCCeEEEEECCC-CeEE-EEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 7 RDGTELHCLKEHGAV-LKLQFLRN---HFLLASINKFGQLRYQDVTM-GEIV-GNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 7 ~~g~~~~~l~~h~~~-~~l~~s~~---~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
.....+..+.+|.+. ++++|+|+ |.+|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++.+|++|+.
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 106 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC
Confidence 345567888899887 99999999 69999999999999999997 5554 788899999999999999999999999
Q ss_pred CCeEEEEeCCCCcceEEEeccCCCeEEEEE--cCCCCEEEEEeCCCeEEEEEcCCceeeEe-------------------
Q 041916 81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAF--HPNGHLMATSGKECKIKIWDLRKYEVLQT------------------- 139 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------------- 139 (359)
||.|++||+.++..+. +..|...|++++| +|++.+|++++.|+.|++||+++++++..
T Consensus 107 dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV 185 (368)
T ss_dssp TSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred CCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence 9999999999887665 5679999999999 89999999999999999999976532110
Q ss_pred -----------------------------------------------------------------------cc---C---
Q 041916 140 -----------------------------------------------------------------------LP---G--- 142 (359)
Q Consensus 140 -----------------------------------------------------------------------~~---~--- 142 (359)
+. .
T Consensus 186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~ 265 (368)
T 3mmy_A 186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT 265 (368)
T ss_dssp EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence 00 0
Q ss_pred ---------CceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 143 ---------HAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 143 ---------~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
.|.+++|+|++ +++++.||.|++||+.++ ..+..+..|.. +|++++|+|++.+|++|+.|+
T Consensus 266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~----~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR-TKLKTSEQLDQ----PISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT-EEEEECCCCSS----CEEEEEECTTSSCEEEEECCC
T ss_pred cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC-cEEEEecCCCC----CceEEEECCCCCeEEEEeccc
Confidence 48899999999 788889999999998766 56666666655 899999999999999998876
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=9.9e-30 Score=232.14 Aligned_cols=212 Identities=15% Similarity=0.138 Sum_probs=182.2
Q ss_pred CeEEEe-CCCc------EEEEeccCCCe-EEEEEecC----C---CEEEEEecCCeEEEEECCCCeE-----EEEEecC-
Q 041916 1 YPYIYN-RDGT------ELHCLKEHGAV-LKLQFLRN----H---FLLASINKFGQLRYQDVTMGEI-----VGNFRTG- 59 (359)
Q Consensus 1 ~v~iwd-~~g~------~~~~l~~h~~~-~~l~~s~~----~---~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~- 59 (359)
+|+||| .++. .+..+.+|... ++++|+|+ + .+|++++.||.|++||+.++.. +..+..|
T Consensus 37 ~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 116 (397)
T 1sq9_A 37 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD 116 (397)
T ss_dssp EEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC
T ss_pred EEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc
Confidence 489999 6666 68888899887 99999999 9 9999999999999999998886 8888888
Q ss_pred ----CCCeEEEEEc----CCCCE-EEEEeCCCeEEEEeCCC------CcceE-----EEe-------ccCCCeEEEEEcC
Q 041916 60 ----LGRTDVMRVN----PFNGV-VSLGHSGGTVTMWKPTT------AAPLI-----KML-------CHQGPVSALAFHP 112 (359)
Q Consensus 60 ----~~~v~~~~~s----p~~~~-l~sg~~dg~v~lwd~~~------~~~~~-----~~~-------~h~~~v~~i~~~~ 112 (359)
...|.+++|+ |++.+ |++|+.||.|++||+.+ +..+. .+. .|...|.+++|+|
T Consensus 117 ~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 196 (397)
T 1sq9_A 117 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE 196 (397)
T ss_dssp TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT
T ss_pred cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC
Confidence 5899999999 99999 99999999999999998 66666 774 4889999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCceeeEecc---------CCceeEEEcCCc--eEEEEcC---CcEEEEcCCCCCCcccee
Q 041916 113 NGHLMATSGKECKIKIWDLRKYEVLQTLP---------GHAKTLDFSQKG--LLAVGTG---SFVQILGDFSGSHNYSRY 178 (359)
Q Consensus 113 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~i~~~~~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~ 178 (359)
++ +|++++.|+.|++||+++++++..+. ..+.+++|+|++ +++++.| +.|++||+.++ ..+..+
T Consensus 197 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~ 274 (397)
T 1sq9_A 197 RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSL 274 (397)
T ss_dssp TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEE
T ss_pred Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-ccccee
Confidence 99 99999999999999999998877663 358999999999 7777788 99999998766 556666
Q ss_pred ec-------------ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 179 MG-------------HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 179 ~~-------------~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
.. |.. .|.+++|+|++.+|++++.||.+.+|....+
T Consensus 275 ~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSS----WVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp CBC--------CCBSBSS----CEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccCcccccccccccccCC----cEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 66 655 8999999999999999999998888876443
No 73
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.9e-29 Score=233.88 Aligned_cols=216 Identities=11% Similarity=0.158 Sum_probs=173.0
Q ss_pred CeEEEe-CCCc-----------EEEEeccCC------------Ce-EEEEEecCC--CEEEEEecCCeEEEEECCCCeEE
Q 041916 1 YPYIYN-RDGT-----------ELHCLKEHG------------AV-LKLQFLRNH--FLLASINKFGQLRYQDVTMGEIV 53 (359)
Q Consensus 1 ~v~iwd-~~g~-----------~~~~l~~h~------------~~-~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~ 53 (359)
.|+||| .++. .+..+.+|. .. ++++|+|++ .+|++++.|++|++||+.++...
T Consensus 51 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~ 130 (447)
T 3dw8_B 51 RVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKR 130 (447)
T ss_dssp EEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEE
T ss_pred eEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCC
Confidence 378999 6665 578899996 55 999999998 79999999999999999764432
Q ss_pred ---------------------------------------EE-EecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-
Q 041916 54 ---------------------------------------GN-FRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA- 92 (359)
Q Consensus 54 ---------------------------------------~~-~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~- 92 (359)
.. ..+|...|.+++|+|++.+|++| .||.|++||+.+.
T Consensus 131 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~ 209 (447)
T 3dw8_B 131 PEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITD 209 (447)
T ss_dssp EECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEE
T ss_pred cceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCC
Confidence 12 35799999999999999999998 7999999999843
Q ss_pred cceE-------EEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCcee----eEecc---C------------Cce
Q 041916 93 APLI-------KMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEV----LQTLP---G------------HAK 145 (359)
Q Consensus 93 ~~~~-------~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~----~~~~~---~------------~i~ 145 (359)
..+. .+.+|...|++++|+|++ .+|++|+.|+.|++||++++.. +..+. . .|.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 210 RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS 289 (447)
T ss_dssp EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEE
T ss_pred ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEE
Confidence 3333 245899999999999998 9999999999999999999876 55552 2 789
Q ss_pred eEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCC-----------cceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 146 TLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKG-----------YQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
+++|+|+| +++++. +.|++||+.....++..+..|..... ..+..++|+|++.+|++|+.||.+.+
T Consensus 290 ~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~i 368 (447)
T 3dw8_B 290 DVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRM 368 (447)
T ss_dssp EEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEE
T ss_pred EEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEE
Confidence 99999999 455555 99999998774577777777742000 01334999999999999999998888
Q ss_pred EEcCCC
Q 041916 213 LVPGSG 218 (359)
Q Consensus 213 ~~~~~~ 218 (359)
|....+
T Consensus 369 wd~~~~ 374 (447)
T 3dw8_B 369 FDRNTK 374 (447)
T ss_dssp EETTTC
T ss_pred EEcCCC
Confidence 876554
No 74
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.7e-30 Score=242.11 Aligned_cols=168 Identities=14% Similarity=0.047 Sum_probs=144.8
Q ss_pred CeEEEe-CCCcE-----------EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEecCCCCeEEE
Q 041916 1 YPYIYN-RDGTE-----------LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFRTGLGRTDVM 66 (359)
Q Consensus 1 ~v~iwd-~~g~~-----------~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~ 66 (359)
+|+||| .++.. ...+.+|... ++++|+|++ .|++|+.||+|++||+.++. +...+.+|...|.++
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV 314 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence 589999 54431 2467888876 999999864 89999999999999999774 456788999999999
Q ss_pred --EEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEeccCC--CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-
Q 041916 67 --RVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG--PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL- 140 (359)
Q Consensus 67 --~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~--~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~- 140 (359)
+|+|++ .+|++|+.||+|+|||+++++++..+.+|.. .|.+++|+|++..+++++.|++|++||++++.++..+
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~ 394 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV 394 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee
Confidence 578887 8999999999999999999888877777753 5889999999999999999999999999998876655
Q ss_pred --cCCceeEEEcCCc--eEEEEcCCcEEEEcCC
Q 041916 141 --PGHAKTLDFSQKG--LLAVGTGSFVQILGDF 169 (359)
Q Consensus 141 --~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~ 169 (359)
.+.|.+++|||+| +++++.|++|++||+.
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTEEECCBSC
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCEEEEEech
Confidence 5689999999999 8889999999999854
No 75
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=5.7e-29 Score=224.88 Aligned_cols=211 Identities=13% Similarity=0.065 Sum_probs=172.7
Q ss_pred CeEEEe-CCCcEEEE--eccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEE-EecCCCCeEEEEEcCCC
Q 041916 1 YPYIYN-RDGTELHC--LKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGN-FRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~--l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~-~~~~~~~v~~~~~sp~~ 72 (359)
.|++|| .++..... +..|... .+++|+|++.+|++++.|+.|++||+..+.. ... ...|...|.+++|+|++
T Consensus 75 ~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 75 NAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp CEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred eEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence 488999 67764433 4567765 9999999999999999999999999988762 333 35688999999999999
Q ss_pred CEEEEEeCCCeEEEEeCC------------------CCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 73 GVVSLGHSGGTVTMWKPT------------------TAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
.+|++|+.||.|++||+. .+.++..+..|.+.|.+++|+|++.+|++++.|+.|++||++++
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 234 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK 234 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence 999999999999999953 56778888899999999999999999999999999999999999
Q ss_pred eeeEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCC--CC-------------------------------Cc---
Q 041916 135 EVLQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFS--GS-------------------------------HN--- 174 (359)
Q Consensus 135 ~~~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~--~~-------------------------------~~--- 174 (359)
+++..+ ...+.+++|+|++ +++++.|+.|++|++.. +. ..
T Consensus 235 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 1k8k_C 235 MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 314 (372)
T ss_dssp TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-----
T ss_pred ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccC
Confidence 888877 3478999999999 77778999999999766 20 00
Q ss_pred ----cceeecccCCCCcceEEEEEe-eCC---CEEEEEcCCCeEEEEEc
Q 041916 175 ----YSRYMGHSMVKGYQIGKVSFR-PYE---DVLGIGHSMGWSSILVP 215 (359)
Q Consensus 175 ----~~~~~~~~~~~~~~v~~~~~~-p~~---~~l~~~~~dg~~~i~~~ 215 (359)
.....+|. .+|++++|+ ++| .+|++|+.||.+.+|..
T Consensus 315 ~~~~~~~~~~h~----~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 315 AAAGAGLDSLHK----NSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp ----CCCSSSSS----SCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred cccccccccccc----CCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 11112444 489999977 555 88988888876666653
No 76
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=9.4e-30 Score=235.85 Aligned_cols=204 Identities=10% Similarity=0.004 Sum_probs=163.3
Q ss_pred EEeccCCC-eEEEEEec-CCCEEEEEecCCeEEEEECCCCeE--EEEEecCCCCeEEEEEcC-CCCEEEEEeCCCeEEEE
Q 041916 13 HCLKEHGA-VLKLQFLR-NHFLLASINKFGQLRYQDVTMGEI--VGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 13 ~~l~~h~~-~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~v~lw 87 (359)
.....|.. ++||+|+| ++.+||+|+.||.|+|||+.++.. ...+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 34455666 49999999 568999999999999999987754 445568999999999998 67899999999999999
Q ss_pred eCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc---eEEEEc
Q 041916 88 KPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG---LLAVGT 159 (359)
Q Consensus 88 d~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g---l~~~~~ 159 (359)
|++++....... .+...+.+++|+|++.+|++|+.||.|++||++. +.+..+ ...|.+++|+|++ +++++.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 998654333332 2344678999999999999999999999999975 444455 4579999999987 556788
Q ss_pred CCcEEEEcCCCCCCcc--ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916 160 GSFVQILGDFSGSHNY--SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN 221 (359)
Q Consensus 160 d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~ 221 (359)
|+.|++||+.+..... ....+|.. .|++++|+|+|.+|++|+.||.+.+|....++..
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~----~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRH----PVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSS----CEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred cceeeEEecccccccceEEEeeeccc----cccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 9999999987653222 22234543 8999999999999999999999999987665443
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.5e-28 Score=227.62 Aligned_cols=202 Identities=15% Similarity=0.249 Sum_probs=179.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|| .+++.+..+.+|... .+++| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++ .++++|
T Consensus 154 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~ 229 (435)
T 1p22_A 154 TIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTC 229 (435)
T ss_dssp CEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEE
T ss_pred eEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEe
Confidence 489999 899999999999987 99988 788999999999999999999999999999999999999975 599999
Q ss_pred eCCCeEEEEeCCCCcce---EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCC
Q 041916 79 HSGGTVTMWKPTTAAPL---IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQK 152 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~ 152 (359)
+.||.|++||+.++... ..+.+|.+.|.+++| ++++|++|+.||.|++||+++++++..+ ...+.+++|++.
T Consensus 230 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~ 307 (435)
T 1p22_A 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 307 (435)
T ss_dssp ETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETT
T ss_pred eCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCC
Confidence 99999999999988765 567799999999999 7889999999999999999999988887 356889999654
Q ss_pred ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 153 GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 153 gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
-+++++.||.|++||+.++ ..+..+.+|.. .|.+++| ++.+|++|+.||.+.+|..
T Consensus 308 ~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~----~v~~~~~--~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECG-ACLRVLEGHEE----LVRCIRF--DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp EEEEEETTSCEEEEETTTC-CEEEEECCCSS----CEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred EEEEEeCCCeEEEEECCCC-CEEEEEeCCcC----cEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence 4888999999999998776 56677777765 8999998 7889999999998877654
No 78
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=217.41 Aligned_cols=206 Identities=14% Similarity=0.162 Sum_probs=177.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMG---EIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
+|++|| .++.....+..|... .+++|+|++.+|++++.||.|++|++... +.+..+..|...|.+++| ++.++
T Consensus 40 ~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l 117 (313)
T 3odt_A 40 TVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVV 117 (313)
T ss_dssp EEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEE
T ss_pred cEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEE
Confidence 489999 888888889998887 99999999999999999999999998754 567788899999999999 56799
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFS 150 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s 150 (359)
++|+.||.|++|| .+..+..+..|...|.+++|+| ++.++++++.|+.|++||.. ..+..+ ...+.+++|+
T Consensus 118 ~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~ 193 (313)
T 3odt_A 118 ISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVV 193 (313)
T ss_dssp EEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEE
T ss_pred EEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEc
Confidence 9999999999999 6777888889999999999998 99999999999999999944 444444 4578999999
Q ss_pred CCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 151 QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 151 ~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
|++ +++++.|+.|++||+.++ ..+..+..|.. .|++++|+|++ .|++++.||.+.+|....+
T Consensus 194 ~~~~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 194 DDGHFISCSNDGLIKLVDMHTG-DVLRTYEGHES----FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp ETTEEEEEETTSEEEEEETTTC-CEEEEEECCSS----CEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred CCCeEEEccCCCeEEEEECCch-hhhhhhhcCCc----eEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence 999 889999999999998766 56667777755 89999999999 5888888887777764433
No 79
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-29 Score=229.76 Aligned_cols=221 Identities=14% Similarity=0.189 Sum_probs=177.0
Q ss_pred EEEe-CCCcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEEC----CCCe------EEEEEec----------C
Q 041916 3 YIYN-RDGTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDV----TMGE------IVGNFRT----------G 59 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------~ 59 (359)
.+|+ ...........|.+. ++++|+|++. +||+|+.||.|++||+ .+++ ....+.. |
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (425)
T 1r5m_A 28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107 (425)
T ss_dssp ------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------
T ss_pred ccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCC
Confidence 4566 333333333344454 9999999999 9999999999999999 8888 4555554 6
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
.+.|.+++|+|++.+|++|+.||.|.+|| .++..+..+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 77999999999999999999999999999 66788888999999999999999999999999999999999999988877
Q ss_pred cc---CC---------------ceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE
Q 041916 140 LP---GH---------------AKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV 200 (359)
Q Consensus 140 ~~---~~---------------i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 200 (359)
+. .. +.+++|+|++ +++++.++.|++||+.++ .....+..|.. .|.+++|+|++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-~~~~~~~~~~~----~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-TPTGKLIGHHG----PISVLEFNDTNKL 261 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-SCSEEECCCSS----CEEEEEEETTTTE
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-ceeeeeccCCC----ceEEEEECCCCCE
Confidence 72 23 8999999999 888889999999998766 56666666655 8999999999999
Q ss_pred EEEEcCCCeEEE-----------------------------EEcCCCCCccccccCCC
Q 041916 201 LGIGHSMGWSSI-----------------------------LVPGSGEPNFDSWVANP 229 (359)
Q Consensus 201 l~~~~~dg~~~i-----------------------------~~~~~~d~~~~~~~~~~ 229 (359)
|++++.||.+.+ +++++.++.+++|++..
T Consensus 262 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTT
T ss_pred EEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCC
Confidence 999999996655 35556677778887653
No 80
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=9e-31 Score=237.62 Aligned_cols=197 Identities=12% Similarity=0.120 Sum_probs=158.6
Q ss_pred CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-
Q 041916 18 HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMG--EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA- 93 (359)
Q Consensus 18 h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~- 93 (359)
+.+ +++++|+|++.+|++|+.|+.|++||+.++ +.+..+.+|...|.+++|+|++.+|++|+.||.|++||+.++.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 444 499999999999999999999999999988 7788899999999999999999999999999999999999877
Q ss_pred --ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee---eEec----cCCceeEEEcCCc--eEEEEcCCc
Q 041916 94 --PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV---LQTL----PGHAKTLDFSQKG--LLAVGTGSF 162 (359)
Q Consensus 94 --~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~i~~~~~s~~g--l~~~~~d~~ 162 (359)
+...+..|...|++++|+|++++|++++.|+.|++||++++.. ...+ .+.|.+++|+|++ +++++.|+.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 6777789999999999999999999999999999999998763 4444 4568999999999 778889999
Q ss_pred EEEEcCCCCC-----------------CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 163 VQILGDFSGS-----------------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 163 i~i~d~~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
|++||+.... .....+ .| ...|.+++|+|++.+|++|+.||.+.+|....+.
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS----GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC----SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cC----CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 9999975321 122223 44 3489999999999999999888877776655443
No 81
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=9.7e-29 Score=225.87 Aligned_cols=214 Identities=20% Similarity=0.268 Sum_probs=174.9
Q ss_pred CeEEEe-CCCcEEEEec-------------cCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeE
Q 041916 1 YPYIYN-RDGTELHCLK-------------EHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTD 64 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~-------------~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 64 (359)
+|+||| .++.....+. +|... .+++|+| ++.+|++++.||.|++||+.+++.+..+. +...+.
T Consensus 67 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~ 145 (408)
T 4a11_B 67 VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVY 145 (408)
T ss_dssp CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEE
T ss_pred eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCcee
Confidence 488999 6655433332 47766 9999999 77899999999999999999999888877 678899
Q ss_pred EEEEcCCC---CEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCce-eeEe
Q 041916 65 VMRVNPFN---GVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYE-VLQT 139 (359)
Q Consensus 65 ~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~ 139 (359)
+++|+|.+ .++++|+.||.|.+||+.++..+..+..|.+.|++++|+|++. +|++++.||.|++||++++. ++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 146 SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 99999854 4999999999999999999999999999999999999999998 58999999999999998764 2222
Q ss_pred c------------------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc-------------------------
Q 041916 140 L------------------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN------------------------- 174 (359)
Q Consensus 140 ~------------------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~------------------------- 174 (359)
+ .+.|.+++|+|++ +++++.||.|++||+.++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSS 305 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSS
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCc
Confidence 1 3568999999999 778889999999998764321
Q ss_pred ---------------------cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 175 ---------------------YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 175 ---------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+..+.+| ...|++++|+|++.+|++|+.||.+.+|......
T Consensus 306 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 306 EFVFVPYGSTIAVYTVYSGEQITMLKGH----YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp CEEEEEETTEEEEEETTTCCEEEEECCC----SSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred eEEEEecCCEEEEEECcCCcceeeeccC----CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 1122334 3489999999999999999999988887765543
No 82
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.8e-29 Score=230.87 Aligned_cols=209 Identities=10% Similarity=0.039 Sum_probs=158.1
Q ss_pred CeEEEe-CCCcEE-----EEeccCCCe-EEEEEec--------CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEE
Q 041916 1 YPYIYN-RDGTEL-----HCLKEHGAV-LKLQFLR--------NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV 65 (359)
Q Consensus 1 ~v~iwd-~~g~~~-----~~l~~h~~~-~~l~~s~--------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 65 (359)
+|+||| .++... ..+.+|.+. ++++|+| |+++||||+.|++|+|||+.++.++..+..|..+|.+
T Consensus 112 ~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~ 191 (393)
T 4gq1_A 112 TVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGIS 191 (393)
T ss_dssp CEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEE
T ss_pred cEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEE
Confidence 589999 666543 346789886 9999998 7899999999999999999999888888889999999
Q ss_pred EEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEE-------------------------EeccCCCeEEEEEc-CCCCEEE
Q 041916 66 MRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIK-------------------------MLCHQGPVSALAFH-PNGHLMA 118 (359)
Q Consensus 66 ~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~-------------------------~~~h~~~v~~i~~~-~~~~~l~ 118 (359)
++|+|++ .+|++|+.||+|++||+.+++.... ..+|...|.++.|+ |+|..|+
T Consensus 192 v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~ 271 (393)
T 4gq1_A 192 VQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL 271 (393)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE
T ss_pred EEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE
Confidence 9999987 5899999999999999987654322 23577788999987 7999999
Q ss_pred EEeCCCeEEEEEcCCceeeEecc---------------------CCceeEEEcCC--c-eEE-EEcCCcEEEEcCCCCCC
Q 041916 119 TSGKECKIKIWDLRKYEVLQTLP---------------------GHAKTLDFSQK--G-LLA-VGTGSFVQILGDFSGSH 173 (359)
Q Consensus 119 ~~~~d~~i~iwd~~~~~~~~~~~---------------------~~i~~~~~s~~--g-l~~-~~~d~~i~i~d~~~~~~ 173 (359)
+++.|+++++||+..+.....+. .......|+|. + +++ ++.||.|++||..++ .
T Consensus 272 s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~ 350 (393)
T 4gq1_A 272 AMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-D 350 (393)
T ss_dssp EECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-T
T ss_pred EEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-c
Confidence 99999999999998765443331 11223344442 3 444 446899999998776 4
Q ss_pred ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.......|.. +|.+++|+|+|++|++++.+|..-+-.
T Consensus 351 ~~~~~~~~~~----~V~svafspdG~~LA~as~~Gv~lvrL 387 (393)
T 4gq1_A 351 SNSIPIQLGM----PIVDFCWHQDGSHLAIATEGSVLLTRL 387 (393)
T ss_dssp CCEEEEECSS----CEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred EEEEecCCCC----cEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 5555566644 899999999999999999988654433
No 83
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=8.1e-30 Score=236.31 Aligned_cols=228 Identities=17% Similarity=0.125 Sum_probs=177.2
Q ss_pred CeEEEe-CCCc--EEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRT--GLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~sp~~~ 73 (359)
+|+||| .++. ....+.+|.+. ++|+|+| ++.+|+||+.||+|++||+.++........ +...+.+++|+|++.
T Consensus 143 ~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (435)
T 4e54_B 143 DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSR 222 (435)
T ss_dssp CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTT
T ss_pred EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCC
Confidence 589999 5554 45556688886 9999998 689999999999999999987654333332 334678999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEec------cCCcee
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQTL------PGHAKT 146 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~ 146 (359)
+|++|+.||.|++||++ ++.+..+.+|...|++++|+|++. +|++++.|++|++||+++......+ ...|.+
T Consensus 223 ~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~ 301 (435)
T 4e54_B 223 MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNA 301 (435)
T ss_dssp EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEE
T ss_pred EEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccc
Confidence 99999999999999986 456777889999999999999876 7889999999999999987654333 457899
Q ss_pred EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCC--CcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCcc
Q 041916 147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK--GYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNF 222 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~~ 222 (359)
++|+|+| +++++.|+.|+|||+.++ .....+..|.... ...+..+.|+|++.+++++..+....++..+..++.|
T Consensus 302 ~~~spdg~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i 380 (435)
T 4e54_B 302 ACFSPDGARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTI 380 (435)
T ss_dssp CCBCTTSSEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCE
T ss_pred eeECCCCCeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEE
Confidence 9999999 888899999999998776 4444444443211 1134567899999998888765433444556667789
Q ss_pred ccccCCCc
Q 041916 223 DSWVANPF 230 (359)
Q Consensus 223 ~~~~~~~~ 230 (359)
++|+....
T Consensus 381 ~iwd~~~g 388 (435)
T 4e54_B 381 DVFDGNSG 388 (435)
T ss_dssp EEECSSSC
T ss_pred EEEECCCC
Confidence 99987543
No 84
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.5e-29 Score=230.73 Aligned_cols=213 Identities=19% Similarity=0.216 Sum_probs=181.7
Q ss_pred CeEEEe-CC----CcEEEEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCe------EEE---EEecCCCCeE
Q 041916 1 YPYIYN-RD----GTELHCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGE------IVG---NFRTGLGRTD 64 (359)
Q Consensus 1 ~v~iwd-~~----g~~~~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~------~~~---~~~~~~~~v~ 64 (359)
.|+||| .+ ...+..+.+|... ++++|+|+ +.+|++++.|+.|++||+.++. ... .+..|...|.
T Consensus 90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred eEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 489999 44 3588999999887 99999998 8999999999999999999876 332 2367889999
Q ss_pred EEEEcCC-CCEEEEEeCCCeEEEEeCCCCcceEEEecc------CCCeEEEEEcCCC-CEEEEEeCCC---eEEEEEcCC
Q 041916 65 VMRVNPF-NGVVSLGHSGGTVTMWKPTTAAPLIKMLCH------QGPVSALAFHPNG-HLMATSGKEC---KIKIWDLRK 133 (359)
Q Consensus 65 ~~~~sp~-~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h------~~~v~~i~~~~~~-~~l~~~~~d~---~i~iwd~~~ 133 (359)
+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|++++|+|++ .+|++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999999 789999999999999999999988888776 7899999999997 6899999998 999999998
Q ss_pred c-eeeEecc----CCceeEEEcC-Cc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC-CEEEEE
Q 041916 134 Y-EVLQTLP----GHAKTLDFSQ-KG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE-DVLGIG 204 (359)
Q Consensus 134 ~-~~~~~~~----~~i~~~~~s~-~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~~~ 204 (359)
+ .++..+. ..|.+++|+| ++ +++++.|+.|++||+.++ ..+..+..|.. .|.+++|+|++ .+|+++
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGN----WCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSS----CCCCEEECTTCTTEEEEC
T ss_pred CCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCC----ceEEEEECCCCCCEEEEE
Confidence 6 5555553 5689999999 77 778889999999998776 66677777755 89999999999 899998
Q ss_pred cCCCeEEEEEcCCC
Q 041916 205 HSMGWSSILVPGSG 218 (359)
Q Consensus 205 ~~dg~~~i~~~~~~ 218 (359)
+.||.+.+|.....
T Consensus 325 ~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 325 SFDNKIEVQTLQNL 338 (416)
T ss_dssp CSSSEEEEEESCCC
T ss_pred ecCCcEEEEEccCC
Confidence 88888777765443
No 85
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=3.1e-29 Score=225.22 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=173.2
Q ss_pred CeEEEe-CCCc-EEEEeccCCCe-EEEEE------ecCCCEEEEEecCCeEEEEECCCCe-EEEEEecCCC----CeEEE
Q 041916 1 YPYIYN-RDGT-ELHCLKEHGAV-LKLQF------LRNHFLLASINKFGQLRYQDVTMGE-IVGNFRTGLG----RTDVM 66 (359)
Q Consensus 1 ~v~iwd-~~g~-~~~~l~~h~~~-~~l~~------s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~ 66 (359)
.|++|| .++. .+..+.+|... .+++| +|++.+|++++.||.|++||+.++. .+..+..|.+ .+.++
T Consensus 91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~ 170 (357)
T 3i2n_A 91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTV 170 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEE
T ss_pred eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEE
Confidence 489999 7776 78899999886 99955 6789999999999999999999887 7778876655 78899
Q ss_pred E----EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 67 R----VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 67 ~----~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
+ |+|++.+|++|+.||.|++||+++++... ...|...|.+++|+| ++.+|++++.||.|++||++++.++..
T Consensus 171 ~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 249 (357)
T 3i2n_A 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG 249 (357)
T ss_dssp EEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred EEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence 8 78899999999999999999999887644 457899999999999 999999999999999999998765432
Q ss_pred c--------cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCC------------------ccceeecccCCCCcceE
Q 041916 140 L--------PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSH------------------NYSRYMGHSMVKGYQIG 190 (359)
Q Consensus 140 ~--------~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~------------------~~~~~~~~~~~~~~~v~ 190 (359)
+ ...|.+++|+|++ +++++.||.|++||+..+.. .+..+..|.. .|+
T Consensus 250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~v~ 325 (357)
T 3i2n_A 250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ----PIS 325 (357)
T ss_dssp EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS----CEE
T ss_pred eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC----Cee
Confidence 2 4578999999998 66778899999999765432 2334445544 899
Q ss_pred EEEEeeCCCEEE-EEcCCCeEEEEEcC
Q 041916 191 KVSFRPYEDVLG-IGHSMGWSSILVPG 216 (359)
Q Consensus 191 ~~~~~p~~~~l~-~~~~dg~~~i~~~~ 216 (359)
+++|+|++.+|+ +++.||.+.+|...
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 999999999888 67778777766543
No 86
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=3.4e-29 Score=228.86 Aligned_cols=214 Identities=13% Similarity=0.084 Sum_probs=177.7
Q ss_pred EEEe-CCCcEEEEeccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEe-------------cCCCCeEEE
Q 041916 3 YIYN-RDGTELHCLKEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFR-------------TGLGRTDVM 66 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------~~~~~v~~~ 66 (359)
++|+ ..+.....+.+|.+. ++++|+| ++.+|++|+.||.|++||+.++.....+. +|...|.++
T Consensus 26 ~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 26 RVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp HHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred eeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence 4566 556677788889987 9999999 99999999999999999999876544433 488999999
Q ss_pred EEcC-CCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCceeeEec--
Q 041916 67 RVNP-FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSGKECKIKIWDLRKYEVLQTL-- 140 (359)
Q Consensus 67 ~~sp-~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~-- 140 (359)
+|+| ++.+|++++.||.|++||+.++.....+. +...+.++.|+|. +.++++++.|+.|++||++++.++..+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 184 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG 184 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC
Confidence 9999 77899999999999999999998877775 7788999999984 459999999999999999998887777
Q ss_pred -cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeeccc-----------CCCCcceEEEEEeeCCCEEEEEc
Q 041916 141 -PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHS-----------MVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 141 -~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.+.|.+++|+|++ +++++.||.|++||+.........+..+. ..+...|.+++|+|++.+|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 4578999999998 55778899999999877643443331110 01334899999999999999999
Q ss_pred CCCeEEEEEcCC
Q 041916 206 SMGWSSILVPGS 217 (359)
Q Consensus 206 ~dg~~~i~~~~~ 217 (359)
.||.+.+|....
T Consensus 265 ~dg~i~vwd~~~ 276 (408)
T 4a11_B 265 TDNRMRLWNSSN 276 (408)
T ss_dssp TTSCEEEEETTT
T ss_pred CCCeEEEEECCC
Confidence 999999987654
No 87
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=249.75 Aligned_cols=198 Identities=14% Similarity=0.174 Sum_probs=166.7
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECC--CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEeCCCeEEE
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVT--MGEIVGNFRTGLGRTDVMRVNPF--NGVVSLGHSGGTVTM 86 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~sp~--~~~l~sg~~dg~v~l 86 (359)
+..+.+|.+. ++++|+|++.+|++|+.||.|++||+. ++..+..+.+|.++|.+++|+|+ +.+|++|+.||.|++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3567899987 999999999999999999999999998 55778889999999999999988 899999999999999
Q ss_pred EeCCCCc--ceEEEeccCCCeEEEEEcCC--CCEEEEEeCCCeEEEEEcCCceee--Eec---cCCceeEEEcCC-----
Q 041916 87 WKPTTAA--PLIKMLCHQGPVSALAFHPN--GHLMATSGKECKIKIWDLRKYEVL--QTL---PGHAKTLDFSQK----- 152 (359)
Q Consensus 87 wd~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~~~~~d~~i~iwd~~~~~~~--~~~---~~~i~~~~~s~~----- 152 (359)
||+.++. .+..+.+|.+.|++++|+|+ +.++++|+.||.|++||++++... ..+ ...|.+++|+|.
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999886 67777899999999999999 999999999999999999987332 222 567999999993
Q ss_pred --------c--eEEEEcCCcEEEEcCCCCCC---ccceeecccCCCCcceEEEEEeeC---CCEEEEEcCCCeEEEE
Q 041916 153 --------G--LLAVGTGSFVQILGDFSGSH---NYSRYMGHSMVKGYQIGKVSFRPY---EDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 --------g--l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~p~---~~~l~~~~~dg~~~i~ 213 (359)
+ +++++.||.|++||+.++.. ....+.+|.. +|++++|+|+ +.+|++|+.||.+.+|
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~----~V~~l~~sp~~~~~~~l~s~s~Dg~I~iw 234 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD----WVRDVAWSPTVLLRSYLASVSQDRTCIIW 234 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS----CEEEEEECCCCSSSEEEEEEESSSCEEEE
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC----cEEEEEeccCCCCCCEEEEEecCCEEEEe
Confidence 6 88888999999999876532 2234445544 8999999999 8999999999977764
No 88
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=229.58 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=163.6
Q ss_pred eEEEEEecCCCEE-EEEecCCeEEEEECC--CCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce
Q 041916 21 VLKLQFLRNHFLL-ASINKFGQLRYQDVT--MGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL 95 (359)
Q Consensus 21 ~~~l~~s~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~ 95 (359)
+++++|+|++.+| ++|+.||.|++||+. ++.++..+. .|...|.+++|+|++.+|++|+.||.|.+|++.++...
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCS
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccc
Confidence 5999999999986 899999999999999 888888876 56789999999999999999999999999999887654
Q ss_pred E----EEeccCCCeEEEEEcCC---CCEEEEEeCCCeEEEEEcCCceeeEec----cCCceeEEEcCCc--eEEEEcCCc
Q 041916 96 I----KMLCHQGPVSALAFHPN---GHLMATSGKECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG--LLAVGTGSF 162 (359)
Q Consensus 96 ~----~~~~h~~~v~~i~~~~~---~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g--l~~~~~d~~ 162 (359)
. .+.+|.+.|++++|+|+ +.+|++++.|+.|++||++++.++..+ .+.|.+++|+ ++ +++++.|+.
T Consensus 185 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~ 263 (450)
T 2vdu_B 185 KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDK 263 (450)
T ss_dssp SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSE
T ss_pred cccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCe
Confidence 4 67789999999999999 999999999999999999998877663 4578999999 88 788889999
Q ss_pred EEEEcCCCCCCccceeeccc---------------------CCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEc
Q 041916 163 VQILGDFSGSHNYSRYMGHS---------------------MVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVP 215 (359)
Q Consensus 163 i~i~d~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~ 215 (359)
|++||+.++ ..+..+..+. ......|.+++|+|++++|++++ .++.+.+|..
T Consensus 264 v~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 264 IFAWDWKTG-KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEETTTC-CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEECCCC-cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 999998776 4444433210 00234689999999999998888 7787777775
No 89
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.7e-29 Score=245.75 Aligned_cols=215 Identities=14% Similarity=0.167 Sum_probs=180.7
Q ss_pred CeEEEe-C--CCcEEEEeccCCCe-EEEEEecC--CCEEEEEecCCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-
Q 041916 1 YPYIYN-R--DGTELHCLKEHGAV-LKLQFLRN--HFLLASINKFGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPF- 71 (359)
Q Consensus 1 ~v~iwd-~--~g~~~~~l~~h~~~-~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~- 71 (359)
+|+||| . ++..+..+.+|.+. ++++|+|+ +.+|++|+.||.|++||+.++. .+..+..|..+|.+++|+|+
T Consensus 32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~ 111 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111 (753)
T ss_dssp EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG
T ss_pred cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCC
Confidence 478999 4 55678899999887 99999988 9999999999999999999987 77888889999999999999
Q ss_pred -CCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcC-------------CCCEEEEEeCCCeEEEEEcCCc-
Q 041916 72 -NGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHP-------------NGHLMATSGKECKIKIWDLRKY- 134 (359)
Q Consensus 72 -~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~-------------~~~~l~~~~~d~~i~iwd~~~~- 134 (359)
+.++++|+.||.|++||+.++. ....+.+|...|.+++|+| ++.+|++|+.||.|++||++++
T Consensus 112 ~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 9999999999999999998773 4556778999999999999 5899999999999999999886
Q ss_pred ---eeeEec---cCCceeEEEcCC---c--eEEEEcCCcEEEEcCCCCCCccc-eeecccCCCCcceEEEEEeeCCCEEE
Q 041916 135 ---EVLQTL---PGHAKTLDFSQK---G--LLAVGTGSFVQILGDFSGSHNYS-RYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 135 ---~~~~~~---~~~i~~~~~s~~---g--l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
.+...+ .+.|.+++|+|+ + +++++.||.|++||+.++..... ....... +...|++++|+|++.+|+
T Consensus 192 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~v~~l~~spdg~~l~ 270 (753)
T 3jro_A 192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK-FPDVLWRASWSLSGNVLA 270 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC-CSSCCCCEEECTTTCCEE
T ss_pred ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC-CCCceEEEEEcCCCCEEE
Confidence 444444 457999999999 7 78888999999999876532211 1111111 344899999999999999
Q ss_pred EEcCCCeEEEEEcC
Q 041916 203 IGHSMGWSSILVPG 216 (359)
Q Consensus 203 ~~~~dg~~~i~~~~ 216 (359)
+|+.||.+.+|...
T Consensus 271 s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 271 LSGGDNKVTLWKEN 284 (753)
T ss_dssp EECSSSCEECCBCC
T ss_pred EEcCCCEEEEEecC
Confidence 99999988887654
No 90
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.8e-28 Score=214.24 Aligned_cols=208 Identities=13% Similarity=0.068 Sum_probs=158.3
Q ss_pred CeEEEe-CCC---cEEEEeccCCC--------------------------eEEEEEecC----CCEEEEEec--------
Q 041916 1 YPYIYN-RDG---TELHCLKEHGA--------------------------VLKLQFLRN----HFLLASINK-------- 38 (359)
Q Consensus 1 ~v~iwd-~~g---~~~~~l~~h~~--------------------------~~~l~~s~~----~~~l~s~~~-------- 38 (359)
.|.+|+ .++ +.++++..|.. +++++|+|| +.++++++.
T Consensus 64 ~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~ 143 (356)
T 2w18_A 64 VVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLT 143 (356)
T ss_dssp EEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEET
T ss_pred eEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEecC
Confidence 378899 777 67888777652 367888888 888887664
Q ss_pred ------------CCeEEEEEC-CCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCcceEEEeccC
Q 041916 39 ------------FGQLRYQDV-TMGEIVGNFRTGLGRTDVMRVNP---FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ 102 (359)
Q Consensus 39 ------------dg~i~iwd~-~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~ 102 (359)
|+.|++|++ .+|+.+..+..|...+..++|+| ++.+|++|+.|++|+|||+.+++++.++.+|.
T Consensus 144 ~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~ 223 (356)
T 2w18_A 144 KRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDD 223 (356)
T ss_dssp TTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC
T ss_pred CCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCC
Confidence 888888888 44788888888888888889988 67899999999999999999999999998654
Q ss_pred ---CCeEEEEEcCCCCEE------------EEEeCCCeEEEEEcCCceeeEec-----cCC---ceeEEEcCCc--eEEE
Q 041916 103 ---GPVSALAFHPNGHLM------------ATSGKECKIKIWDLRKYEVLQTL-----PGH---AKTLDFSQKG--LLAV 157 (359)
Q Consensus 103 ---~~v~~i~~~~~~~~l------------~~~~~d~~i~iwd~~~~~~~~~~-----~~~---i~~~~~s~~g--l~~~ 157 (359)
..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+ .++ +.+..++ + ++++
T Consensus 224 ~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASg 301 (356)
T 2w18_A 224 SYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAI 301 (356)
T ss_dssp ---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEE
T ss_pred cceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEE
Confidence 367788999999886 56788999999999999887654 232 2233333 4 6667
Q ss_pred EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 158 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+.|++|+|||+.++ +.+..+.+|.. ..+..++|+|+|++|++|+.|+.+++|.
T Consensus 302 S~DgTIkIWDl~tG-k~l~tL~gH~~---~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 302 LTSGTIAIWDLLLG-QCTALLPPVSD---QHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ETTSCEEEEETTTC-SEEEEECCC-----CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEECCCC-cEEEEecCCCC---CeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 78999999998877 67777877743 2345689999999999988888777764
No 91
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-28 Score=219.81 Aligned_cols=203 Identities=11% Similarity=0.108 Sum_probs=163.1
Q ss_pred CCCcEEEEec-cCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCC
Q 041916 7 RDGTELHCLK-EHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSG 81 (359)
Q Consensus 7 ~~g~~~~~l~-~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~d 81 (359)
.++..+..+. .|.+. .+++|+| ++.+|++|+.||+|++||+.+++++..+.. +...+.+++|+|++.+|++|+.|
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d 191 (343)
T 3lrv_A 112 KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191 (343)
T ss_dssp TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT
T ss_pred CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC
Confidence 4555555554 55554 9999999 999999999999999999999998776644 45589999999999999999999
Q ss_pred CeEEEEeCCCCcce-EEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------CCce--eEEEcC
Q 041916 82 GTVTMWKPTTAAPL-IKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------GHAK--TLDFSQ 151 (359)
Q Consensus 82 g~v~lwd~~~~~~~-~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------~~i~--~~~~s~ 151 (359)
|.|++||++++..+ ..+.. |.++|++++|+|+|.+|++++ |+.|++||++++.++..+. .++. +++|+|
T Consensus 192 g~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 192 GILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp SCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT
T ss_pred CEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC
Confidence 99999999999887 78887 999999999999999999999 5599999999987765542 2333 699999
Q ss_pred Cc--eEEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee---CCCEEEEEcCCCeEEEEEcCCCC
Q 041916 152 KG--LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP---YEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 152 ~g--l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+| +++++. |+.|++|++......... . ++..++|.| +...+++++.||.+.+++..+.+
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~----~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTKNWTK-----D----EESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTCSEEE-----E----EEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred CCCEEEEecCCCCcEEEEEEcccccceEe-----c----CceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 99 556666 899999997655332222 1 688899999 88999999999988887755443
No 92
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=221.35 Aligned_cols=211 Identities=9% Similarity=0.019 Sum_probs=164.9
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECC---------CCeEEEEEe-cCCCCeEEEEEc
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVT---------MGEIVGNFR-TGLGRTDVMRVN 69 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~---------~~~~~~~~~-~~~~~v~~~~~s 69 (359)
+|++|| .+|..+..+. ...+.++.|+|+ +++++.|++|++|+.. +++.+..+. .|.++|.+++|+
T Consensus 59 ~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 134 (343)
T 3lrv_A 59 ALHFTQLKDSKTITTIT-TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGH 134 (343)
T ss_dssp EEEEEEESSSSCEEEEE-EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC
T ss_pred cEEEEECCCCcEEEEEe-cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcC
Confidence 478999 8888888777 233478888888 9999999999999765 555555555 677889999999
Q ss_pred C--CCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-Eec----c
Q 041916 70 P--FNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-QTL----P 141 (359)
Q Consensus 70 p--~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~----~ 141 (359)
| ++.+|++|+.||+|++||+++++.+..+. .|...|++++|+|+|.+|++|+.||.|++||+++++.+ ..+ .
T Consensus 135 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~ 214 (343)
T 3lrv_A 135 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE 214 (343)
T ss_dssp C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT
T ss_pred CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC
Confidence 9 99999999999999999999998866664 45568999999999999999999999999999998866 555 3
Q ss_pred CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcce--EEEEEeeCCCEEEEEcC-CCeEEEEEcCC
Q 041916 142 GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI--GKVSFRPYEDVLGIGHS-MGWSSILVPGS 217 (359)
Q Consensus 142 ~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~~~~~-dg~~~i~~~~~ 217 (359)
++|.+++|+|+| +++++.++.|++||+.+. .....+..+.. +...+ .+++|+|++++|++++. ++.+.+|....
T Consensus 215 ~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 215 AKIKEVKFADNGYWMVVECDQTVVCFDLRKD-VGTLAYPTYTI-PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp SCEEEEEECTTSSEEEEEESSBEEEEETTSS-TTCBSSCCCBC------CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCEEEEEEeCCCCEEEEEeCCeEEEEEcCCC-Ccceeeccccc-ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 579999999999 444444779999998776 33333332111 11134 46999999999999888 88888876543
No 93
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.1e-27 Score=223.43 Aligned_cols=209 Identities=17% Similarity=0.233 Sum_probs=178.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEe--cCCCEEEEEecCCeEEEEECCCCe-----------------------EE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFL--RNHFLLASINKFGQLRYQDVTMGE-----------------------IV 53 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s--~~~~~l~s~~~dg~i~iwd~~~~~-----------------------~~ 53 (359)
+|++|| .++..+..+.+|... .+++|+ +++.+|++|+.||.|++||+.++. .+
T Consensus 184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 589999 889999999999887 999998 477999999999999999998765 25
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 041916 54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
..+.+|...|.++ ++++.++++|+.||.|++||+.+++++..+.+|.+.|.+++|+|+++++++|+.|+.|++||+++
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 5677888888877 57789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEec---cCCceeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 134 YEVLQTL---PGHAKTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 134 ~~~~~~~---~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
++++..+ ...|.+++|++.-+++++.||.|++||+.+.. ..... .+ ...+..++|+|++.+|++|+ +|.+
T Consensus 342 ~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~-~~~~~-~~----~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 342 GELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-RKFSY-HH----TNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp TEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-EEEEE-EC----TTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc-eeeee-cC----CCCccEEEEEeCCCEEEEec-CCeE
Confidence 9998888 45689999996558999999999999987653 22222 22 23688899999999999887 7777
Q ss_pred EEEEcCCC
Q 041916 211 SILVPGSG 218 (359)
Q Consensus 211 ~i~~~~~~ 218 (359)
.+|...++
T Consensus 415 ~iwd~~~g 422 (464)
T 3v7d_B 415 NIYNLRSG 422 (464)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 77765543
No 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=9.4e-29 Score=226.65 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=176.0
Q ss_pred CeEEEe-CCC-------cEEEEeccCCCe-EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEE--ecCCCCeEEEEE
Q 041916 1 YPYIYN-RDG-------TELHCLKEHGAV-LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNF--RTGLGRTDVMRV 68 (359)
Q Consensus 1 ~v~iwd-~~g-------~~~~~l~~h~~~-~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~ 68 (359)
+|+||| .++ ..+..+.+|... .+++|+|++ .+|++|+.||.|++||+.+++.+..+ ..|...|.+++|
T Consensus 105 ~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 105 TVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp EEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred eEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence 489999 666 567889999886 999999998 79999999999999999999999999 789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCcceEEE-eccCCC-eEEEEEcCCCCEEEEE---eCCCeEEEEEcCCcee-e--Eec
Q 041916 69 NPFNGVVSLGHSGGTVTMWKPTTAAPLIKM-LCHQGP-VSALAFHPNGHLMATS---GKECKIKIWDLRKYEV-L--QTL 140 (359)
Q Consensus 69 sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~-~~h~~~-v~~i~~~~~~~~l~~~---~~d~~i~iwd~~~~~~-~--~~~ 140 (359)
+|++.+|++|+.||.|++||+++++.+..+ .+|.+. +.+++|+|++.+|++| +.|+.|++||++++.. + ..+
T Consensus 185 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 185 SRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp CTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred CCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999999999999999999999999998888 688876 8999999999999999 7899999999998654 2 222
Q ss_pred --cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 141 --PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 141 --~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
...+.+++|+|++ +++++ .|+.|++||+.++......+..|. +..+|.+++|+|++.++++ .++.+.+|..
T Consensus 265 ~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 265 DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SKESQRGMGYMPKRGLEVN--KCEIARFYKL 340 (402)
T ss_dssp CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CSSCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cCCcccceEEeccccccee--cceeEEEEEc
Confidence 4568999999999 54455 699999999877644355555553 3348999999999987653 3344455443
No 95
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-28 Score=225.79 Aligned_cols=212 Identities=13% Similarity=0.179 Sum_probs=168.3
Q ss_pred CeEEEe-C---CCcEEEEeccC------------CC-eEEEE--EecCCCEEEEEecCCeEEEEECCCCeEEEEEec--C
Q 041916 1 YPYIYN-R---DGTELHCLKEH------------GA-VLKLQ--FLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT--G 59 (359)
Q Consensus 1 ~v~iwd-~---~g~~~~~l~~h------------~~-~~~l~--~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~ 59 (359)
+|+||| . +|..+..+..| .. +.++. ++|++.+|++|+.|+.|++||+.+++++..+.. |
T Consensus 134 ~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h 213 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR 213 (437)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG
T ss_pred EEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC
Confidence 378898 3 56555444322 22 35665 557899999999999999999999999999998 8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcC----CCCEEEEEeCCCeEEEEEcCCc
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHP----NGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~----~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
.+.|++++|+|++.+|++|+.||.|++||++++.++..+. .|..+|++++|+| ++.+|++++.|+.|++||++++
T Consensus 214 ~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 214 HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 8999999999999999999999999999999999888886 7888999996665 6779999999999999999998
Q ss_pred eeeEecc-----------------------------CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeeccc--
Q 041916 135 EVLQTLP-----------------------------GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHS-- 182 (359)
Q Consensus 135 ~~~~~~~-----------------------------~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 182 (359)
+++..+. ..|.+++|++.. +++++.|+.|++||+.++ .....+.+|.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~ 372 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNEL-SSSKAVISPSRF 372 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCG-GGCEEEECC--C
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCc-ccceEEeccccc
Confidence 8766552 137889999444 777888999999998766 4444444320
Q ss_pred -------------------------------CCCCcceEEEEEeeC--CCEEEEEcCCCeEEEE
Q 041916 183 -------------------------------MVKGYQIGKVSFRPY--EDVLGIGHSMGWSSIL 213 (359)
Q Consensus 183 -------------------------------~~~~~~v~~~~~~p~--~~~l~~~~~dg~~~i~ 213 (359)
..+...|++++|+++ +.+|++|+.||.+.+|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw 436 (437)
T 3gre_A 373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436 (437)
T ss_dssp CCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred CceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence 002348999999998 7788888888877766
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.8e-28 Score=227.10 Aligned_cols=210 Identities=14% Similarity=0.151 Sum_probs=170.4
Q ss_pred EEeCCCcEEEEe-ccCCCe-EEEEEec-CCCEEEEEecCCeEEEEECCC---Ce---EEEEEecCCCCeEEEEEcCCCCE
Q 041916 4 IYNRDGTELHCL-KEHGAV-LKLQFLR-NHFLLASINKFGQLRYQDVTM---GE---IVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 4 iwd~~g~~~~~l-~~h~~~-~~l~~s~-~~~~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
.|+.+|+.+..+ .+|.+. ++++|+| ++.+|++|+.||+|++||+.+ +. ....+ .|..+|.+++|+|++.+
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~ 125 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA 125 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE
T ss_pred cccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE
Confidence 477788999999 888776 9999999 999999999999999999976 43 23333 48999999999999999
Q ss_pred EEEEeCCCeEEEEeCC---CCcceEEEec------------cCCCeEEEE--EcCCCCEEEEEeCCCeEEEEEcCCceee
Q 041916 75 VSLGHSGGTVTMWKPT---TAAPLIKMLC------------HQGPVSALA--FHPNGHLMATSGKECKIKIWDLRKYEVL 137 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~---~~~~~~~~~~------------h~~~v~~i~--~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 137 (359)
|++|+.||.|++||+. +++.+..+.. +...+.++. ++|++.+|++++.|+.|++||+++++++
T Consensus 126 l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 205 (437)
T 3gre_A 126 FAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL 205 (437)
T ss_dssp EEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee
Confidence 9999999999999994 5544443332 455666666 5678999999999999999999999988
Q ss_pred Eecc-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceee-cccCCCCcceEEEEEee----CCCEEEEEc
Q 041916 138 QTLP-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRP----YEDVLGIGH 205 (359)
Q Consensus 138 ~~~~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p----~~~~l~~~~ 205 (359)
..+. +.|.+++|+|++ +++++.||.|++||+.++ ..+..+. .|.. +|.+++|+| ++.+|++|+
T Consensus 206 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~----~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 206 QIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHA----PITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp EEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCE----EEEEEEECTTTCTTEEEEEEES
T ss_pred EEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCC----ceEEEEeccccCCCccEEEEEc
Confidence 7773 578999999999 778889999999998775 4444443 4433 899996665 577999999
Q ss_pred CCCeEEEEEcCCCC
Q 041916 206 SMGWSSILVPGSGE 219 (359)
Q Consensus 206 ~dg~~~i~~~~~~d 219 (359)
.||.+.+|....+.
T Consensus 281 ~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 281 SKTFLTIWNFVKGH 294 (437)
T ss_dssp TTEEEEEEETTTTE
T ss_pred CCCcEEEEEcCCCc
Confidence 99988888765443
No 97
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=5.4e-28 Score=216.04 Aligned_cols=212 Identities=10% Similarity=0.019 Sum_probs=175.2
Q ss_pred CeEEEe-CCCc---EEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEEC-CCCeEEEEEec--CCCCeEEEEEcCC
Q 041916 1 YPYIYN-RDGT---ELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDV-TMGEIVGNFRT--GLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd-~~g~---~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~-~~~~~~~~~~~--~~~~v~~~~~sp~ 71 (359)
.|+||+ .++. ....+..|... ++++|+|++. +|++|+.||.|++||+ .++.. ..+.. |...|.+++|+|
T Consensus 34 ~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~- 111 (342)
T 1yfq_A 34 SLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG- 111 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-
T ss_pred eEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-
Confidence 378999 6665 34555677776 9999999999 9999999999999999 87764 77888 999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCC---------CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC-ceee-E-e
Q 041916 72 NGVVSLGHSGGTVTMWKPTT---------AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK-YEVL-Q-T 139 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~---------~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~-~-~ 139 (359)
+.+|++++.||.|++||+++ ++++..+. |.+.|.+++|+|++ +++++.|+.|++||+++ +... . .
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~ 188 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE 188 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE
T ss_pred CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee
Confidence 99999999999999999987 77666665 88999999999987 99999999999999998 5431 1 1
Q ss_pred ---ccCCceeEEEcC-Cc--eEEEEcCCcEEEEcCCCC-----CCccceeecccC-----CCCcceEEEEEeeCCCEEEE
Q 041916 140 ---LPGHAKTLDFSQ-KG--LLAVGTGSFVQILGDFSG-----SHNYSRYMGHSM-----VKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 140 ---~~~~i~~~~~s~-~g--l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~l~~ 203 (359)
....+.+++|+| ++ +++++.||.|++|++... ......+..|.. .+...|.+++|+|++.+|++
T Consensus 189 ~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 268 (342)
T 1yfq_A 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp ECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred ecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEE
Confidence 156799999999 88 778889999999997665 355566666632 12348999999999999999
Q ss_pred EcCCCeEEEEEcCC
Q 041916 204 GHSMGWSSILVPGS 217 (359)
Q Consensus 204 ~~~dg~~~i~~~~~ 217 (359)
|+.||.+.+|....
T Consensus 269 ~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 269 AGSDGIISCWNLQT 282 (342)
T ss_dssp EETTSCEEEEETTT
T ss_pred ecCCceEEEEcCcc
Confidence 99988877777543
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=4.1e-27 Score=218.58 Aligned_cols=200 Identities=17% Similarity=0.249 Sum_probs=172.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|| .++..+..+.+|... .+++|+ +.+|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +..+++|
T Consensus 140 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~ 215 (445)
T 2ovr_B 140 TLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSG 215 (445)
T ss_dssp CEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEE
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEE
Confidence 589999 899999999999987 999997 5699999999999999999999999999999999999996 4689999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCceE
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKGLL 155 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~gl~ 155 (359)
+.||.|++||+.+++.+..+.+|...|.+++| ++.++++++.|+.|++||+++++++..+. +.+.+++|+..-++
T Consensus 216 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 293 (445)
T 2ovr_B 216 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVV 293 (445)
T ss_dssp ETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEE
T ss_pred eCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEE
Confidence 99999999999999999999999999999999 78899999999999999999999888873 56888988333388
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+++.|+.|++||+.++ .....+..|.. .+.++.+ ++.+|++|+.||.+.+|
T Consensus 294 ~~~~d~~i~i~d~~~~-~~~~~~~~~~~----~v~~~~~--~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 294 SGSLDTSIRVWDVETG-NCIHTLTGHQS----LTSGMEL--KDNILVSGNADSTVKIW 344 (445)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECCCCS----CEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred EEeCCCeEEEEECCCC-CEEEEEcCCcc----cEEEEEE--eCCEEEEEeCCCeEEEE
Confidence 8889999999998776 55666666644 6776665 57789999998866654
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=8.2e-28 Score=249.88 Aligned_cols=216 Identities=16% Similarity=0.208 Sum_probs=184.2
Q ss_pred EEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 12 LHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 12 ~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
...+.+|.+. ++++|+|++.+|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++.+|++|+.||.|++||+.
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 3467789887 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEEcCCcE
Q 041916 91 TAAPLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFV 163 (359)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i 163 (359)
+++.+..+.+|.+.|.+++|+| ++.++++++.|+.|++||++++.++..+ .+.|.+++|+|++ +++++.||.|
T Consensus 688 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v 767 (1249)
T 3sfz_A 688 TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767 (1249)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence 9999999999999999999999 5668999999999999999999988877 4578999999999 7888899999
Q ss_pred EEEcCCCCCCccceee---------------------------------------------------cccCCCCcceEEE
Q 041916 164 QILGDFSGSHNYSRYM---------------------------------------------------GHSMVKGYQIGKV 192 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~---------------------------------------------------~~~~~~~~~v~~~ 192 (359)
++||+.++.. ...+. .....+...|.++
T Consensus 768 ~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 768 RLWDVRSANE-RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEGGGTEE-EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEeCCCCcc-cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 9999755411 10000 0000134478999
Q ss_pred EEeeCCCEEEEEcCCCeEEEE------------------------------EcCCCCCccccccCC
Q 041916 193 SFRPYEDVLGIGHSMGWSSIL------------------------------VPGSGEPNFDSWVAN 228 (359)
Q Consensus 193 ~~~p~~~~l~~~~~dg~~~i~------------------------------~~~~~d~~~~~~~~~ 228 (359)
+|+|++.++++++.+|.+.+| ++++.|+.+++|+..
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHH
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEcc
Confidence 999999999999999866553 456678888888753
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-27 Score=208.07 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=170.4
Q ss_pred CeEEEe-C---CCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCE
Q 041916 1 YPYIYN-R---DGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNP-FNGV 74 (359)
Q Consensus 1 ~v~iwd-~---~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp-~~~~ 74 (359)
.|++|+ . .+..+..+..|... .+++| ++.+|++++.||.|++|| .+..+..+..|..++.+++|+| ++.+
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~ 157 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENK 157 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCE
Confidence 367888 3 33567788889887 99999 567999999999999999 6888899999999999999998 8899
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEec-cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEc
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFS 150 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s 150 (359)
+++++.||.|++|| .......+.. |...|.+++|+|++. +++++.|+.|++||+++++++..+ .+.+.+++|+
T Consensus 158 l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 158 FLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 99999999999999 4556667776 999999999999998 999999999999999999988877 4579999999
Q ss_pred CCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 151 QKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 151 ~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
|++ +++++.||.|++||+.++ .....+..|.. .|.+++|+|++. +++++.||.+.+|.
T Consensus 235 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~----~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 235 PNGDIVSCGEDRTVRIWSKENG-SLKQVITLPAI----SIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp TTSCEEEEETTSEEEEECTTTC-CEEEEEECSSS----CEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred cCCCEEEEecCCEEEEEECCCC-ceeEEEeccCc----eEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 999 999999999999998776 56666766654 899999999998 44566665555444
No 101
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=8e-28 Score=214.93 Aligned_cols=200 Identities=12% Similarity=0.008 Sum_probs=170.2
Q ss_pred EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEE
Q 041916 13 HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGE---IVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMW 87 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lw 87 (359)
....+|.+. ++++|+|++.+|++++.||.|++||+.++. ....+..|...|.+++|+|++. +|++|+.||.|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w 84 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence 334578776 999999999999999999999999998877 3455668999999999999999 99999999999999
Q ss_pred eC-CCCcceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------ceeeEec--cCCceeEEEcCCc
Q 041916 88 KP-TTAAPLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---------YEVLQTL--PGHAKTLDFSQKG 153 (359)
Q Consensus 88 d~-~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~--~~~i~~~~~s~~g 153 (359)
|+ .++. ...+.+ |...|.+++|+| +.+|++++.|+.|++||+++ ++++..+ .+.+.+++|+|++
T Consensus 85 d~~~~~~-~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 85 DLIGSPS-FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp CSSSSSS-EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred EeccCCc-eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 99 7664 467778 999999999999 99999999999999999998 7666665 5679999999999
Q ss_pred eEEEEcCCcEEEEcCCC-CCCccc-eeecccCCCCcceEEEEEee-CCCEEEEEcCCCeEEEEEcCCC
Q 041916 154 LLAVGTGSFVQILGDFS-GSHNYS-RYMGHSMVKGYQIGKVSFRP-YEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 154 l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~v~~~~~~p-~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+++++.++.|++||+.+ ...... ....| ...|.+++|+| ++.+|++|+.+|.+.+|.....
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGL----KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSC----SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCC----CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 88999999999999876 433222 22233 34899999999 9999999999998888765443
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.96 E-value=2.5e-27 Score=228.25 Aligned_cols=206 Identities=14% Similarity=0.170 Sum_probs=181.3
Q ss_pred eEEEe-CCC----cEEEEeccCCC--eEEEEEec--CCCEEEEEecCCeEEEEECCCC--------eEEEEEecCCCCeE
Q 041916 2 PYIYN-RDG----TELHCLKEHGA--VLKLQFLR--NHFLLASINKFGQLRYQDVTMG--------EIVGNFRTGLGRTD 64 (359)
Q Consensus 2 v~iwd-~~g----~~~~~l~~h~~--~~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~ 64 (359)
|+||| .++ ..+..+.+|.. +++++|+| ++.+|++|+.||.|++||+.++ ..+..+..|..+|.
T Consensus 41 v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~ 120 (615)
T 1pgu_A 41 AFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS 120 (615)
T ss_dssp EEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE
T ss_pred EEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE
Confidence 78999 778 78889998876 59999999 9999999999999999999755 67788889999999
Q ss_pred EEEEcCCCCEEEEEeCC----CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCC-EEEEEeCCCeEEEEEcCCceeeEe
Q 041916 65 VMRVNPFNGVVSLGHSG----GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGH-LMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~d----g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
+++|+|++.+|++++.+ +.|.+|| .+..+..+.+|.+.|++++|+|++. ++++++.|+.|++||+.+++++..
T Consensus 121 ~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~ 198 (615)
T 1pgu_A 121 DISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 198 (615)
T ss_dssp EEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred EEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeee
Confidence 99999999999999988 7899998 5677888899999999999999998 799999999999999999998888
Q ss_pred c---cC---CceeEEEcCC-c--eEEEEcCCcEEEEcCCCCCCcccee-e---cccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 140 L---PG---HAKTLDFSQK-G--LLAVGTGSFVQILGDFSGSHNYSRY-M---GHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 140 ~---~~---~i~~~~~s~~-g--l~~~~~d~~i~i~d~~~~~~~~~~~-~---~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
+ .. .|.+++|+|+ + +++++.|+.|++||+.++ .....+ . .|.. .|.+++|+ ++.+|++++.
T Consensus 199 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~----~v~~~~~~-~~~~l~~~~~ 272 (615)
T 1pgu_A 199 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG-EFLKYIEDDQEPVQG----GIFALSWL-DSQKFATVGA 272 (615)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC-CEEEECCBTTBCCCS----CEEEEEES-SSSEEEEEET
T ss_pred ecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCC-CEeEEecccccccCC----ceEEEEEc-CCCEEEEEcC
Confidence 7 34 6899999999 8 777888999999998776 455555 3 5544 89999999 9999999999
Q ss_pred CCeEEEEEc
Q 041916 207 MGWSSILVP 215 (359)
Q Consensus 207 dg~~~i~~~ 215 (359)
||.+.+|..
T Consensus 273 d~~i~~wd~ 281 (615)
T 1pgu_A 273 DATIRVWDV 281 (615)
T ss_dssp TSEEEEEET
T ss_pred CCcEEEEEC
Confidence 998777653
No 103
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.3e-27 Score=221.19 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=169.8
Q ss_pred EEeccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCC----------CeEEEEEecCCCCeEEEEEcCCCC-EEEEEe
Q 041916 13 HCLKEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTM----------GEIVGNFRTGLGRTDVMRVNPFNG-VVSLGH 79 (359)
Q Consensus 13 ~~l~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~ 79 (359)
.....|.+. ++++|+|+ +.+||+++.||.|++||+.+ ...+..+.+|...|.+++|+|++. +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 444566665 99999997 68999999999999999986 677888999999999999999988 999999
Q ss_pred CCCeEEEEeCCCCcc-------eEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCc---eeeEec---cCCce
Q 041916 80 SGGTVTMWKPTTAAP-------LIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKY---EVLQTL---PGHAK 145 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~-------~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~---~~~~~~---~~~i~ 145 (359)
.||.|++||+.++.. ...+.+|.+.|.+++|+| ++.+|++++.|+.|++||++++ .++..+ ...|+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~ 281 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence 999999999987422 456778999999999999 7889999999999999999986 455544 56799
Q ss_pred eEEEcCCc---eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEEEcCC
Q 041916 146 TLDFSQKG---LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 146 ~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~~~~~ 217 (359)
+++|+|++ +++++.||.|++||+.....++..+..|.. .|++++|+|++. +|++++.||.+.+|....
T Consensus 282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 99999988 567888999999998876567777777765 899999999995 577877777777766543
No 104
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=220.11 Aligned_cols=196 Identities=11% Similarity=0.123 Sum_probs=159.1
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCe-----------EEEEEecCC------------CCeEEEEEcCCC--CE
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-----------IVGNFRTGL------------GRTDVMRVNPFN--GV 74 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~sp~~--~~ 74 (359)
.+++++|+|++.+||+|+.||.|++||+.++. +...+.+|. ..|.+++|+|++ .+
T Consensus 30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~ 109 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ 109 (447)
T ss_dssp SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence 35999999999999999999999999999876 578899998 889999999998 79
Q ss_pred EEEEeCCCeEEEEeCCCCcce---------------------------------------EE-EeccCCCeEEEEEcCCC
Q 041916 75 VSLGHSGGTVTMWKPTTAAPL---------------------------------------IK-MLCHQGPVSALAFHPNG 114 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~---------------------------------------~~-~~~h~~~v~~i~~~~~~ 114 (359)
|++++.||.|++||+.++... .. ..+|...|++++|+|++
T Consensus 110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 189 (447)
T 3dw8_B 110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY 189 (447)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence 999999999999998764321 12 35799999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCC-ceeeEe-------c---cCCceeEEEcCCc---eEEEEcCCcEEEEcCCCCCCc---cce
Q 041916 115 HLMATSGKECKIKIWDLRK-YEVLQT-------L---PGHAKTLDFSQKG---LLAVGTGSFVQILGDFSGSHN---YSR 177 (359)
Q Consensus 115 ~~l~~~~~d~~i~iwd~~~-~~~~~~-------~---~~~i~~~~~s~~g---l~~~~~d~~i~i~d~~~~~~~---~~~ 177 (359)
++|++| .|+.|++||+++ ...+.. + ...|.+++|+|++ +++++.||.|++||+.++... ...
T Consensus 190 ~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 268 (447)
T 3dw8_B 190 ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKL 268 (447)
T ss_dssp SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEE
T ss_pred CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeE
Confidence 999998 799999999994 444442 2 4568999999987 778889999999998776322 344
Q ss_pred eecccCC--------CCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 178 YMGHSMV--------KGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 178 ~~~~~~~--------~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
+..|... +...|.+++|+|++.+|++++. |.+.+|....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 269 FEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp ECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTC
T ss_pred eccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCC
Confidence 5544210 0127999999999999999988 8888887654
No 105
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-27 Score=237.63 Aligned_cols=198 Identities=10% Similarity=0.037 Sum_probs=166.6
Q ss_pred ccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916 16 KEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 16 ~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~ 94 (359)
.+|... ++++|+|++.+||+|+.||.|++||..+++....+. |..+|.+++|+| +.+|++++.|++|++||+.++++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 467665 999999999999999999999999998887765554 778999999999 88999999999999999999998
Q ss_pred eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceee-----------Eec---cCCceeEEEcCCc---eEEE
Q 041916 95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVL-----------QTL---PGHAKTLDFSQKG---LLAV 157 (359)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----------~~~---~~~i~~~~~s~~g---l~~~ 157 (359)
+..+. |.+.|++++|+|++++|++|+.||+|++||+.++.+. ..+ .+.|.+++|+|++ ++++
T Consensus 92 ~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 92 LTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 88885 7789999999999999999999999999999988753 111 3579999999974 6777
Q ss_pred EcCCcEEEEcCCCCCCccceeeccc--------------CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 158 GTGSFVQILGDFSGSHNYSRYMGHS--------------MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 158 ~~d~~i~i~d~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+.|+.| +||+.++ .....+..|. ..+...|++++|+|+|.+|++|+.||.+.+|....+
T Consensus 171 ~~dg~v-lWd~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g 243 (902)
T 2oaj_A 171 YEYVTL-TYSLVEN-EIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG 243 (902)
T ss_dssp CSSCEE-EEETTTT-EEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred eCCCcE-EEECCCC-ceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 788999 9998766 4444454440 001247999999999999999999999999987554
No 106
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-27 Score=222.14 Aligned_cols=200 Identities=12% Similarity=0.035 Sum_probs=165.1
Q ss_pred CeEEEe-C--CCcEEEEec--cCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE----EEecCCCCeEEEEEcC
Q 041916 1 YPYIYN-R--DGTELHCLK--EHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG----NFRTGLGRTDVMRVNP 70 (359)
Q Consensus 1 ~v~iwd-~--~g~~~~~l~--~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~sp 70 (359)
+|+||| . ++..+..+. .|.. +++++|+|++.+|++|+.+|.|++|++.++.... .+.+|...|++++|+|
T Consensus 126 ~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp 205 (450)
T 2vdu_B 126 SLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIK 205 (450)
T ss_dssp EEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEE
T ss_pred eEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcC
Confidence 378999 6 788888886 4445 4999999999999999999999999998877544 7788999999999999
Q ss_pred C---CCEEEEEeCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----
Q 041916 71 F---NGVVSLGHSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP----- 141 (359)
Q Consensus 71 ~---~~~l~sg~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----- 141 (359)
+ +.+|++|+.|+.|++||+.++..+.. +.+|.+.|++++|+ ++.+|++++.|++|++||+++++++..+.
T Consensus 206 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~ 284 (450)
T 2vdu_B 206 DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI 284 (450)
T ss_dssp CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh
Confidence 9 99999999999999999999988877 55899999999999 99999999999999999999998776652
Q ss_pred -----------------------CCceeEEEcCCc--eEEEE-cCCcEEEEcC--CCCC--CccceeecccCCCCcceEE
Q 041916 142 -----------------------GHAKTLDFSQKG--LLAVG-TGSFVQILGD--FSGS--HNYSRYMGHSMVKGYQIGK 191 (359)
Q Consensus 142 -----------------------~~i~~~~~s~~g--l~~~~-~d~~i~i~d~--~~~~--~~~~~~~~~~~~~~~~v~~ 191 (359)
..+.+++|+|++ +++++ .++.|++|++ ..+. .....+..+ . .|.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~----~v~~ 359 (450)
T 2vdu_B 285 KPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-Y----NVIS 359 (450)
T ss_dssp GGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-S----CEEE
T ss_pred hhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-C----ceEE
Confidence 247899999999 56666 7899999997 3321 233344444 2 7999
Q ss_pred EEEeeCCCEEEEEcC
Q 041916 192 VSFRPYEDVLGIGHS 206 (359)
Q Consensus 192 ~~~~p~~~~l~~~~~ 206 (359)
++|+|++.++++++.
T Consensus 360 ~~~~~~~~~v~~~~~ 374 (450)
T 2vdu_B 360 LSAHNDEFQVTLDNK 374 (450)
T ss_dssp EEEETTEEEEEECCT
T ss_pred EEecCCcEEEEEecc
Confidence 999996544444343
No 107
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1.6e-27 Score=215.71 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=146.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~s 77 (359)
+|+||| .++.++..+..+..+.+++|+|||.+|++++.+ .+.+|+..++..+.. ...|...|.+++|+|++.++++
T Consensus 158 ~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 158 IMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 489999 899999999866667999999999999999855 677777777776543 3468889999999999999999
Q ss_pred EeCCC----eEEEEeCCCCcc----eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec----cCCce
Q 041916 78 GHSGG----TVTMWKPTTAAP----LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL----PGHAK 145 (359)
Q Consensus 78 g~~dg----~v~lwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~~~i~ 145 (359)
++.|+ .+.+|++..... ...+.+|...|++++|+|+|++||+|+.|++|+|||+++++++..+ ...|+
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 99887 688899876643 3456789999999999999999999999999999999999998875 35799
Q ss_pred eEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 146 TLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 146 ~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
+++|||+| +++++.|++|+|||+..+
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999 888999999999998654
No 108
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=2e-26 Score=213.91 Aligned_cols=209 Identities=18% Similarity=0.250 Sum_probs=180.9
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|++|| .++..+..+.+|... .+++|+ +.+|++|+.||.|++||+.+++.+..+.+|..+|.+++| ++.++++|
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 255 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSG 255 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEE
T ss_pred eEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEE
Confidence 589999 889999999999987 999996 567999999999999999999999999999999999999 67899999
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCCceE
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKGLL 155 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~gl~ 155 (359)
+.||.|++||+.+++++..+.+|.+.|.+++| ++.++++++.|+.|++||+++++++..+. ..+.++.++++-++
T Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 333 (445)
T 2ovr_B 256 AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILV 333 (445)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEE
T ss_pred cCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEE
Confidence 99999999999999999999999999999999 78899999999999999999999888873 45677777655588
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+++.||.|++||+.++ .....+..+.. +...|++++|+ +.+|++|+.||.+.+|....+.
T Consensus 334 ~~~~dg~i~vwd~~~~-~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 334 SGNADSTVKIWDIKTG-QCLQTLQGPNK-HQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 393 (445)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECSTTS-CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred EEeCCCeEEEEECCCC-cEEEEEccCCC-CCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc
Confidence 8999999999998766 55666665332 34489999995 6789999988888888765443
No 109
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.2e-28 Score=223.03 Aligned_cols=199 Identities=9% Similarity=0.100 Sum_probs=160.2
Q ss_pred cCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-----CeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 17 EHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-----RTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 17 ~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
.|.. +.+++|||+|.+||+++.||.|++||..+ ++..+. |.. .|.+++|||+|++|++|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 3344 49999999999999999999999999643 677777 665 49999999999999999999999999999
Q ss_pred CCcc-------eEEE----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee---eEec----cCCceeEEEcCC
Q 041916 91 TAAP-------LIKM----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV---LQTL----PGHAKTLDFSQK 152 (359)
Q Consensus 91 ~~~~-------~~~~----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~----~~~i~~~~~s~~ 152 (359)
++.. +.++ .+|.+.|.+++|+|+| +++++.|++|++||+.++.. ..++ ...|.+++|+ +
T Consensus 160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-g 236 (588)
T 2j04_A 160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-D 236 (588)
T ss_dssp CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-T
T ss_pred CCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-C
Confidence 8753 5666 5677899999999999 88899999999999988763 2333 3469999999 4
Q ss_pred ceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE--eeCCCEEEEEcCCCeEEEEEc------C------CC
Q 041916 153 GLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF--RPYEDVLGIGHSMGWSSILVP------G------SG 218 (359)
Q Consensus 153 gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~~~~~dg~~~i~~~------~------~~ 218 (359)
..++++.++.|++||+..+ .......+|.. .|.+++| +|++..|++++.+|. ++|.. . +.
T Consensus 237 ~~LASa~~~tIkLWd~~~~-~~~~~~~gh~~----~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~ 310 (588)
T 2j04_A 237 YKVVLTCPGYVHKIDLKNY-SISSLKTGSLE----NFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYL 310 (588)
T ss_dssp TEEEEECSSEEEEEETTTT-EEEEEECSCCS----CCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHH
T ss_pred CEEEEEeCCeEEEEECCCC-eEEEEEcCCCc----eEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEc
Confidence 5555555899999997655 33222225654 8999999 999999999999998 77763 1 12
Q ss_pred CCccccccC
Q 041916 219 EPNFDSWVA 227 (359)
Q Consensus 219 d~~~~~~~~ 227 (359)
|+.+++|+.
T Consensus 311 d~~v~lW~~ 319 (588)
T 2j04_A 311 EKKFKKWST 319 (588)
T ss_dssp HHHHHHTTT
T ss_pred CCEEEEEEC
Confidence 677888876
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=5.7e-27 Score=217.11 Aligned_cols=201 Identities=14% Similarity=0.211 Sum_probs=168.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEE---EEEecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIV---GNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~sp~~~~l 75 (359)
+|++|| .++..+..+.+|... .+++|++ .+|++|+.||.|++||+.++... ..+.+|...|.+++| ++.+|
T Consensus 194 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l 269 (435)
T 1p22_A 194 TVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 269 (435)
T ss_dssp CEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEE
T ss_pred eEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEE
Confidence 589999 899999999999887 9999974 58999999999999999987654 677889999999999 67899
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc---CCceeEEEcCC
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP---GHAKTLDFSQK 152 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~ 152 (359)
++|+.||.|++||+++++++..+.+|...|.+++| ++.++++|+.||.|++||++++.++..+. ..|.+++|++.
T Consensus 270 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 347 (435)
T 1p22_A 270 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK 347 (435)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEECCSS
T ss_pred EEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEecCC
Confidence 99999999999999999999999999999999999 46799999999999999999999988883 46899999444
Q ss_pred ceEEEEcCCcEEEEcCCCCCC--------ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 153 GLLAVGTGSFVQILGDFSGSH--------NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 gl~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
-+++++.||.|++||+.++.. ....+..|.. .|.+++| ++.+|++|+.||.+.+|
T Consensus 348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~--~~~~l~s~s~Dg~i~iw 410 (435)
T 1p22_A 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG----RVFRLQF--DEFQIVSSSHDDTILIW 410 (435)
T ss_dssp EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS----CCCCEEE--CSSCEEECCSSSEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC----CeEEEEe--CCCEEEEEeCCCEEEEE
Confidence 488899999999999755421 3445556654 8999999 67666665555544333
No 111
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.95 E-value=9.3e-27 Score=224.20 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=175.0
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCC---CeEEEEEcCC-CCEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLG---RTDVMRVNPF-NGVV 75 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~-~~~l 75 (359)
|++|| .+..+..+.+|... .+++|+|++. +|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +.+|
T Consensus 144 v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 144 FISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp EEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred EEEEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEE
Confidence 56676 77888999999987 9999999997 899999999999999999999999999999 9999999999 9999
Q ss_pred EEEeCCCeEEEEeCCCCcceEEE-e---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------CCc
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKM-L---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-------GHA 144 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~-~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-------~~i 144 (359)
++|+.||.|++||+.+++.+..+ . .|.+.|.+++|+ ++.+|++++.|+.|++||+++++.+..+. ..+
T Consensus 223 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 301 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 301 (615)
T ss_dssp EEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred EEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCce
Confidence 99999999999999999999988 6 899999999999 99999999999999999999998887772 346
Q ss_pred eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 145 KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 145 ~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.++.|+... +++++.++.|++||+.++ .....+..|.. .|.+++| |+ |++++.||.+.+|
T Consensus 302 ~~~~~~~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~----~v~~~~~-~~---l~~~~~dg~i~~w 362 (615)
T 1pgu_A 302 VGVVATGNGRIISLSLDGTLNFYELGHD-EVLKTISGHNK----GITALTV-NP---LISGSYDGRIMEW 362 (615)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTEE-EEEEEECCCSS----CEEEEET-TT---TEEEETTSCEEET
T ss_pred eEEEeCCCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCC----CEEEEEe-cC---cEEECCCCeEEEE
Confidence 778886333 888889999999997764 55566666654 7888888 77 7777777766654
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=3.4e-26 Score=202.09 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=138.8
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
++|+||+++ +||+| .|++|+|||+.+|+++..+. +|...|++++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~ 106 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 106 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence 789999986 77766 59999999999999888775 577789999999999999999999999999998876655443
Q ss_pred -----------------------------------------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916 100 -----------------------------------------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138 (359)
Q Consensus 100 -----------------------------------------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 138 (359)
+|...+.++.|++++.+|++++.|++|++||+++++...
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW 186 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS
T ss_pred CccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc
Confidence 345566778888888899999999999999988765322
Q ss_pred e-------ccCCceeEEEcCCc--eE-E--EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-
Q 041916 139 T-------LPGHAKTLDFSQKG--LL-A--VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH- 205 (359)
Q Consensus 139 ~-------~~~~i~~~~~s~~g--l~-~--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~- 205 (359)
. ..+.+.+++++|++ ++ . ++.++.|++||.... .... ...+. ..+..+.|+|++..+++++
T Consensus 187 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~-~~~~-~~~~~----~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 187 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-ACLS-AVDAH----SQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC-CEEE-EEECS----SCEEEEEEETTTTEEEEEEC
T ss_pred cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc-cccc-cccce----eeeeeeeecccccceEEEEE
Confidence 1 14578888888877 32 2 235688999986554 2222 22232 2799999999999877654
Q ss_pred -CCCeEEEE
Q 041916 206 -SMGWSSIL 213 (359)
Q Consensus 206 -~dg~~~i~ 213 (359)
.||.+.+|
T Consensus 261 ~~d~~i~iw 269 (318)
T 4ggc_A 261 FAQNQLVIW 269 (318)
T ss_dssp TTTCCEEEE
T ss_pred cCCCEEEEE
Confidence 45544444
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.95 E-value=3.8e-26 Score=203.53 Aligned_cols=171 Identities=13% Similarity=0.222 Sum_probs=147.5
Q ss_pred CeEEEe-CCC----cEEEEeccCCCe-EEEEEec--CCCEEEEEecCCeEEEEECCCC---------eEEEEEecCCCCe
Q 041916 1 YPYIYN-RDG----TELHCLKEHGAV-LKLQFLR--NHFLLASINKFGQLRYQDVTMG---------EIVGNFRTGLGRT 63 (359)
Q Consensus 1 ~v~iwd-~~g----~~~~~l~~h~~~-~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~~~~v 63 (359)
+|+||| .++ ..+..+.+|... ++++|+| ++.+|++|+.||.|++||+.++ +.+..+..|...|
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v 113 (351)
T 3f3f_A 34 HIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL 113 (351)
T ss_dssp EEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCE
T ss_pred eEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCce
Confidence 378999 555 467788889886 9999999 6999999999999999999887 6688888999999
Q ss_pred EEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcc-----------------------------------------------
Q 041916 64 DVMRVNPF--NGVVSLGHSGGTVTMWKPTTAAP----------------------------------------------- 94 (359)
Q Consensus 64 ~~~~~sp~--~~~l~sg~~dg~v~lwd~~~~~~----------------------------------------------- 94 (359)
.+++|+|+ +.+|++|+.||.|++||+++++.
T Consensus 114 ~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 193 (351)
T 3f3f_A 114 YSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQA 193 (351)
T ss_dssp EEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEE
T ss_pred eEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCc
Confidence 99999999 99999999999999999875431
Q ss_pred -------------eEEEeccCCCeEEEEEcCCC----CEEEEEeCCCeEEEEEcCCc-----------------------
Q 041916 95 -------------LIKMLCHQGPVSALAFHPNG----HLMATSGKECKIKIWDLRKY----------------------- 134 (359)
Q Consensus 95 -------------~~~~~~h~~~v~~i~~~~~~----~~l~~~~~d~~i~iwd~~~~----------------------- 134 (359)
+..+.+|.+.|++++|+|++ .+|++++.||.|++||++++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (351)
T 3f3f_A 194 IIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD 273 (351)
T ss_dssp EEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------------
T ss_pred EEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccc
Confidence 33445789999999999998 89999999999999999874
Q ss_pred -----------------------eeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 135 -----------------------EVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 135 -----------------------~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
.++..+ .+.|++++|+|++ +++++.||.|++||+.++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 274 MDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -----------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 444444 3579999999999 888889999999997765
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=2.9e-25 Score=202.32 Aligned_cols=205 Identities=9% Similarity=0.093 Sum_probs=168.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-E
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-L 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-s 77 (359)
.|++|| .+++.+..+..|..+.+++|+|++.+| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++.+|+ +
T Consensus 13 ~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~ 91 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVT 91 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEE
T ss_pred EEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEE
Confidence 379999 889999999999889999999999876 677789999999999999998888665 899999999999775 4
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG- 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g- 153 (359)
++.++.|.+||+.+++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+.+++.+..+ ...+.+++|+|+|
T Consensus 92 ~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~ 170 (391)
T 1l0q_A 92 NMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGT 170 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred ECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCC
Confidence 556799999999999888777654 468999999999987 67778999999999999888777 4567999999999
Q ss_pred -e-EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc---CCCeEEEE
Q 041916 154 -L-LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH---SMGWSSIL 213 (359)
Q Consensus 154 -l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~---~dg~~~i~ 213 (359)
+ ++++.++.|++||+.++ .....+. +. ..+.+++|+|++++|++++ .++.+.+|
T Consensus 171 ~l~~~~~~~~~v~~~d~~~~-~~~~~~~-~~----~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 171 KVYVANFDSMSISVIDTVTN-SVIDTVK-VE----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp EEEEEETTTTEEEEEETTTT-EEEEEEE-CS----SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCC-eEEEEEe-cC----CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 4 34456799999998765 3333333 22 2789999999999988887 45544443
No 115
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.7e-26 Score=228.48 Aligned_cols=202 Identities=12% Similarity=0.126 Sum_probs=161.7
Q ss_pred CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
+|+||+ .++.....+. |.. +.+++|+| +.+|++++.|++|++||+.+++++..+. |.+.|++++|+|++.+|++|
T Consensus 40 ~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 40 EVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIG 116 (902)
T ss_dssp EEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEE
T ss_pred EEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEE
Confidence 489999 5555555554 444 59999999 8899999999999999999999998886 66899999999999999999
Q ss_pred eCCCeEEEEeCCCCcce-----------EEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEecc-----
Q 041916 79 HSGGTVTMWKPTTAAPL-----------IKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTLP----- 141 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~-----------~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~----- 141 (359)
+.||.|++||+.++... ..+.+|.++|++++|+|+ +..|++|+.|+.| +||+++++++..+.
T Consensus 117 s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~ 195 (902)
T 2oaj_A 117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP 195 (902)
T ss_dssp ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence 99999999999987653 223578999999999995 5789999999999 99999998887763
Q ss_pred ----------------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccce--e---ecccC---------CCCcce
Q 041916 142 ----------------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSR--Y---MGHSM---------VKGYQI 189 (359)
Q Consensus 142 ----------------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~--~---~~~~~---------~~~~~v 189 (359)
..|.+++|+|+| +++++.|+.|++||+.++ ..+.. + ..|.. .+..+|
T Consensus 196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V 274 (902)
T 2oaj_A 196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQPDYIRDSSTNAAKI 274 (902)
T ss_dssp TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence 348999999999 788889999999998776 33221 1 11210 023379
Q ss_pred EEEEEeeC----C-CEEEEEcCC
Q 041916 190 GKVSFRPY----E-DVLGIGHSM 207 (359)
Q Consensus 190 ~~~~~~p~----~-~~l~~~~~d 207 (359)
++++|++. + .+|++|+.+
T Consensus 275 ~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 275 SKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp EEEEEEECSSTTEEEEEEEEECS
T ss_pred eEEEEEecCCCCCCEEEEeCCCC
Confidence 99999763 2 467777555
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=8.9e-26 Score=203.54 Aligned_cols=206 Identities=12% Similarity=0.145 Sum_probs=158.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEE-
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTGLGRTDVMRVNPFNGVVSL- 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~s- 77 (359)
+|+||| .+|+++..+..+..+.+++|+++. ++++ .++.|++||+.++ +.+..+.. +...+++++ .++++
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~ 153 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYS 153 (355)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEE
T ss_pred EEEEEECCCCcEEEEEECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEe
Confidence 479999 899999999877667999998864 4443 3789999999988 66666654 455667777 55655
Q ss_pred -EeCCCeEEEEeCCCCc---------------c-eEEEeccCCCeEEEEEcCCCCEEEEEeCCCe-EEEEEcCCceeeEe
Q 041916 78 -GHSGGTVTMWKPTTAA---------------P-LIKMLCHQGPVSALAFHPNGHLMATSGKECK-IKIWDLRKYEVLQT 139 (359)
Q Consensus 78 -g~~dg~v~lwd~~~~~---------------~-~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~ 139 (359)
|+.||.|++||+.++. + +..+.+|.+.|++++|+|+|.+|++|+.|++ |++||+++++++..
T Consensus 154 sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 154 NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 6899999999999765 2 7788999999999999999999999999998 99999999998877
Q ss_pred cc-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccc-eeec-----c------------cCCCCcceEEEEE
Q 041916 140 LP-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYS-RYMG-----H------------SMVKGYQIGKVSF 194 (359)
Q Consensus 140 ~~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~-~~~~-----~------------~~~~~~~v~~~~~ 194 (359)
+. +.|.+++|+|+| +++++.|+.|++||+........ .+.. + ......+...++|
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 313 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAW 313 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEE
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEE
Confidence 74 368999999999 77888999999999865421111 1000 0 0001113467899
Q ss_pred eeCCCEEEEEcCCCeEEEEE
Q 041916 195 RPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 195 ~p~~~~l~~~~~dg~~~i~~ 214 (359)
+|++.+|++++.||...+|.
T Consensus 314 ~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 314 ISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SSSSEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEeCCCeEEEEE
Confidence 99999998888888766664
No 117
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.95 E-value=2.1e-25 Score=205.58 Aligned_cols=237 Identities=17% Similarity=0.223 Sum_probs=177.9
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
+.|+||++ ++||+|. |++|+|||+.+|+++..+. +|...|++|+|+|+|.+|++|+.||.|++||+.+++.+..+.
T Consensus 109 ~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~ 186 (420)
T 4gga_A 109 NLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT 186 (420)
T ss_dssp BCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred eeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe
Confidence 67999975 5777765 8999999999999887665 567789999999999999999999999999999999999999
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-eeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCC
Q 041916 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-VLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSH 173 (359)
Q Consensus 100 ~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~ 173 (359)
+|...+.+++++ +.+|++|+.|+.+++||.+... .+..+ ...+..+.|+|+| +++++.|+.+++|+..++..
T Consensus 187 ~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 187 SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred CCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 999999988874 6799999999999999998743 34444 4578999999999 77888999999999876543
Q ss_pred c---cceeecccCCCCcceEEEEEeeCCC-EEEE--EcCCCeEEEE-------------------------------EcC
Q 041916 174 N---YSRYMGHSMVKGYQIGKVSFRPYED-VLGI--GHSMGWSSIL-------------------------------VPG 216 (359)
Q Consensus 174 ~---~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~--~~~dg~~~i~-------------------------------~~~ 216 (359)
. ......| ...|.+++|+|++. ++++ |+.|+.+++| .+|
T Consensus 265 ~~~~~~~~~~~----~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 265 GWVPLQTFTQH----QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp CSCCSEEECCC----SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEEC
T ss_pred cceeeeeeccc----CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEe
Confidence 2 2333344 34899999999765 4444 4578877664 224
Q ss_pred CCCCccccccCCCccCh--hhhchhhhhhhhhcCCCCceeeCCCCCeeeeccc
Q 041916 217 SGEPNFDSWVANPFETS--KQRREKEVRSLLDKLPPETIMLNPSKIGTVREAK 267 (359)
Q Consensus 217 ~~d~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~i~~~~~~~~~~~~~~ 267 (359)
..|+.+++|++...... ...+...|..+........| +.....+.++.+.
T Consensus 341 ~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l-~S~s~D~tvriWd 392 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATV-ASAAADETLRLWR 392 (420)
T ss_dssp TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCE-EEEETTTEEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEE-EEEecCCeEEEEE
Confidence 57899999998654432 22345556555432222222 2223445555554
No 118
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=6.7e-26 Score=198.07 Aligned_cols=166 Identities=15% Similarity=0.088 Sum_probs=137.4
Q ss_pred CeEEEe--CCCcEEEEeccCCCe-EEEEEec---CCCEEEEEecCCeEEEEECCCCeEEEEEecCC---CCeEEEEEcCC
Q 041916 1 YPYIYN--RDGTELHCLKEHGAV-LKLQFLR---NHFLLASINKFGQLRYQDVTMGEIVGNFRTGL---GRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd--~~g~~~~~l~~h~~~-~~l~~s~---~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~sp~ 71 (359)
+|++|+ .+|+.+..+..|... +.++|+| ++.+|++|+.|++|+|||+.+|+++.++.+|. ..+.+++|+|+
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 378898 568888888888876 8999999 77999999999999999999999999998754 36778899999
Q ss_pred CCEE------------EEEeCCCeEEEEeCCCCcceEEE-----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCc
Q 041916 72 NGVV------------SLGHSGGTVTMWKPTTAAPLIKM-----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKY 134 (359)
Q Consensus 72 ~~~l------------~sg~~dg~v~lwd~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~ 134 (359)
|.++ ++|+.|++|++||+.+++.+..+ .+|.+.+.+..+ ++.++++++.|++|+|||+.++
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCC
Confidence 9876 56889999999999999877665 366666554444 4889999999999999999999
Q ss_pred eeeEeccC---Cc-eeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916 135 EVLQTLPG---HA-KTLDFSQKG--LLAVGTGSFVQILGD 168 (359)
Q Consensus 135 ~~~~~~~~---~i-~~~~~s~~g--l~~~~~d~~i~i~d~ 168 (359)
+++.++.+ .+ .+++|||+| +++++.|++|+|||+
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999853 24 568999999 778889999999984
No 119
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=1.2e-25 Score=202.68 Aligned_cols=205 Identities=9% Similarity=0.039 Sum_probs=151.9
Q ss_pred EEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEeC
Q 041916 4 IYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV-SLGHS 80 (359)
Q Consensus 4 iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~sg~~ 80 (359)
||+ .++..+..+..|... ++++|+|||.+|++|+.++ +++||+.++........ ..+..+++.++++.+ ++|+.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECC
Confidence 566 566777778889887 9999999999999998775 78999998876655443 357888999988877 56788
Q ss_pred CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCC-----------------------------------CEEEE--EeCC
Q 041916 81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNG-----------------------------------HLMAT--SGKE 123 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~-----------------------------------~~l~~--~~~d 123 (359)
|++|++||+.+++++..+. |...|.+++|+++. .++++ |+.|
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~ 158 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNL 158 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCT
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcC
Confidence 8999999999999888876 66789999888752 23444 4678
Q ss_pred CeEEEEEcCCce---------------e-eEec---cCCceeEEEcCCc--eEEEEcCCc-EEEEcCCCCCCccceee-c
Q 041916 124 CKIKIWDLRKYE---------------V-LQTL---PGHAKTLDFSQKG--LLAVGTGSF-VQILGDFSGSHNYSRYM-G 180 (359)
Q Consensus 124 ~~i~iwd~~~~~---------------~-~~~~---~~~i~~~~~s~~g--l~~~~~d~~-i~i~d~~~~~~~~~~~~-~ 180 (359)
|.|++||++++. + +..+ .+.|.+++|+|+| +++++.|++ |++||+.++ ..+..+. +
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g 237 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG-VLVREFRRG 237 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC-CEEEEEECT
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcC
Confidence 889999988754 1 4444 4579999999999 778889998 999998776 5556665 4
Q ss_pred -ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCC
Q 041916 181 -HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 181 -~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~ 217 (359)
|.. .|.+++|+|++.+|++|+.||.+.+|....
T Consensus 238 ~h~~----~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 238 LDRA----DVVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TCCS----CEEEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred CCCC----cEEEEEECCCCCEEEEEECCCEEEEEEccC
Confidence 654 899999999999999999999888887644
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.3e-25 Score=205.72 Aligned_cols=222 Identities=10% Similarity=0.048 Sum_probs=179.0
Q ss_pred CeEEEe-CCCcEEE-----EeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 1 YPYIYN-RDGTELH-----CLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~-----~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
.|++|| .+|+.+. .+.+|... .+++|+|++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++.
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD 224 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT
T ss_pred eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC
Confidence 489999 7888877 34577776 9999999999999999999999999999999999999999999999999998
Q ss_pred EEE-EEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe--------CCCeEEEEEcCCceeeEec--cC
Q 041916 74 VVS-LGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG--------KECKIKIWDLRKYEVLQTL--PG 142 (359)
Q Consensus 74 ~l~-sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~--------~d~~i~iwd~~~~~~~~~~--~~ 142 (359)
.++ +++.|+.|.+||+.+++.+..+..+ ..+.+++|+|+|+++++++ .|+.|++||+++++.+..+ .+
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~ 303 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG 303 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC
Confidence 775 5558999999999999887777654 4589999999999999988 5889999999999887766 56
Q ss_pred CceeEEEcCCc--eEE-EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe---EEEEEcC
Q 041916 143 HAKTLDFSQKG--LLA-VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW---SSILVPG 216 (359)
Q Consensus 143 ~i~~~~~s~~g--l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~---~~i~~~~ 216 (359)
.+.+++|+|++ +++ ++.++.|.+||+.++ .....+. +. ..+.+++|+|++++|++++.+.. ...++++
T Consensus 304 ~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~~-~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 304 NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSIP-VF----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp CEEEEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEEE-CS----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred CcceEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEec-CC----CCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 78999999999 444 467899999998765 3444333 32 27899999999998888876431 1233445
Q ss_pred CCCCccccccCCC
Q 041916 217 SGEPNFDSWVANP 229 (359)
Q Consensus 217 ~~d~~~~~~~~~~ 229 (359)
+.|+.+.+|+...
T Consensus 378 ~~dg~v~~~d~~~ 390 (433)
T 3bws_A 378 LVLGKVYVIDTTT 390 (433)
T ss_dssp SSCCEEEEEETTT
T ss_pred ccceEEEEEECCC
Confidence 5566777776643
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=1.4e-24 Score=197.71 Aligned_cols=209 Identities=11% Similarity=0.079 Sum_probs=172.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEE-EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLAS-INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV-SL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~s 77 (359)
+|++|| .+++.+..+..+..+.+++|+|++.+|++ ++.++.|++||+.+++.+..+..+ ..+.+++|+|++..| ++
T Consensus 55 ~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~ 133 (391)
T 1l0q_A 55 DVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVT 133 (391)
T ss_dssp EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEE
Confidence 378999 88999999998887899999999997754 556799999999999988888755 568999999999877 68
Q ss_pred EeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG- 153 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g- 153 (359)
++.|+.|.+||+.+++.+..+..+. .+.+++|+|++++| ++++.|+.|++||+++++.+..+ ...+.+++|+|+|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 212 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT 212 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS
T ss_pred eCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCC
Confidence 8889999999999998888877654 56999999999987 56778899999999999887776 4568999999999
Q ss_pred -eEEEE---cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE-EEEcCCCeEEEEEcCC
Q 041916 154 -LLAVG---TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL-GIGHSMGWSSILVPGS 217 (359)
Q Consensus 154 -l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l-~~~~~dg~~~i~~~~~ 217 (359)
+++++ .++.|.+||+.++ .....+..+. .+.+++|+|++++| ++++.++.+.+|....
T Consensus 213 ~l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 213 KAYVTNVDKYFNTVSMIDTGTN-KITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp EEEEEEECSSCCEEEEEETTTT-EEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEecCcCCCcEEEEECCCC-eEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 55555 5799999998766 4555555443 57899999999877 5667788777776544
No 122
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=7.3e-25 Score=203.37 Aligned_cols=193 Identities=10% Similarity=0.099 Sum_probs=151.9
Q ss_pred CeEEEeCCCcEEEEeccCCC------eEEEEEecCCCEEEEEecCCeEEEEECCCCe-------EEEEE----ecCCCCe
Q 041916 1 YPYIYNRDGTELHCLKEHGA------VLKLQFLRNHFLLASINKFGQLRYQDVTMGE-------IVGNF----RTGLGRT 63 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~------~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~----~~~~~~v 63 (359)
.|+|||..+ ++..+. |.. +.+++|||||++||+|+.||+|++||+.++. .+..+ .+|...|
T Consensus 108 ~V~iwd~~~-~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V 185 (588)
T 2j04_A 108 NVSVFKDNK-MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWV 185 (588)
T ss_dssp CEEEEETTE-EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCE
T ss_pred cEEEEeCCc-eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccE
Confidence 478999544 677777 653 6999999999999999999999999999875 36776 5677899
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc---eEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eE
Q 041916 64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP---LIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQ 138 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~---~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~ 138 (359)
.+++|+|+| +++++.|++|++||+..+.. ..++. +|...|.+++|+ |.+||+++ +++|++||+.++.. ..
T Consensus 186 ~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~ 260 (588)
T 2j04_A 186 THIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL 260 (588)
T ss_dssp EEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE
T ss_pred EEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE
Confidence 999999999 88899999999999988763 35663 788999999999 68999987 69999999998877 43
Q ss_pred ec--cCCceeEEE--cCCc--eEEEEcCCcEEEEcCCC-----CC-----------------CccceeecccCCCCcceE
Q 041916 139 TL--PGHAKTLDF--SQKG--LLAVGTGSFVQILGDFS-----GS-----------------HNYSRYMGHSMVKGYQIG 190 (359)
Q Consensus 139 ~~--~~~i~~~~~--s~~g--l~~~~~d~~i~i~d~~~-----~~-----------------~~~~~~~~~~~~~~~~v~ 190 (359)
.+ .+.+.+++| +|++ +++++.+|+ ++|.... +. .....+. ....|.
T Consensus 261 ~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-----~~~~I~ 334 (588)
T 2j04_A 261 KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-----TTLVIH 334 (588)
T ss_dssp ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-----CEEEEE
T ss_pred EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-----cceEEE
Confidence 33 457899999 9999 555556888 8887421 10 0111111 122599
Q ss_pred EEEEeeCCCEEEEEcC
Q 041916 191 KVSFRPYEDVLGIGHS 206 (359)
Q Consensus 191 ~~~~~p~~~~l~~~~~ 206 (359)
+++|+|+|+.+|+++.
T Consensus 335 ~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 335 GISLSPDGYSIAIVYD 350 (588)
T ss_dssp EEEECTTSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEe
Confidence 9999999999998764
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=1.6e-25 Score=204.66 Aligned_cols=157 Identities=13% Similarity=0.170 Sum_probs=120.5
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCCeEEE-----EEecCCCCeEEEEEcC--------CCCEEEEEeCCCeEEEEeCC
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVG-----NFRTGLGRTDVMRVNP--------FNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~sp--------~~~~l~sg~~dg~v~lwd~~ 90 (359)
..+++++.+|++++.|++|++||+.++.... .+.+|.+.|++++|+| ++++||+|+.|++|+|||+.
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 3445566789999999999999999886543 3568999999999998 78899999999999999999
Q ss_pred CCcceEEEeccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEec----------------------------c
Q 041916 91 TAAPLIKMLCHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQTL----------------------------P 141 (359)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~----------------------------~ 141 (359)
++.++..+..|..+|.+++|+|++ .+|++++.|++|++||+++++..... .
T Consensus 175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 254 (393)
T 4gq1_A 175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA 254 (393)
T ss_dssp TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence 988888888999999999999987 47999999999999999886543221 1
Q ss_pred CCceeEEEc-CCc--eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916 142 GHAKTLDFS-QKG--LLAVGTGSFVQILGDFSGSHNYSRYMGH 181 (359)
Q Consensus 142 ~~i~~~~~s-~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 181 (359)
..+.++.|+ |+| +++++.|+.+++||+..+ .....+..|
T Consensus 255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~ 296 (393)
T 4gq1_A 255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN-NDYNEISDS 296 (393)
T ss_dssp SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------
T ss_pred ccceeeeeecCCCCEEEEEeCCCCEEEEECccC-CCCceEeee
Confidence 346788886 777 778889999999998765 333444444
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1e-23 Score=194.60 Aligned_cols=206 Identities=11% Similarity=0.052 Sum_probs=167.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
.|++|| .++..+..+..|... .+++|+|++.+++ +++.|+.|++||+.+++.+..+..+ ..+.+++|+|++..|++
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEE
Confidence 378999 888999999888775 9999999998875 5557999999999999988888765 46899999999999998
Q ss_pred Ee--------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEE-EEEeCCCeEEEEEcCCceeeEec--cCCcee
Q 041916 78 GH--------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLM-ATSGKECKIKIWDLRKYEVLQTL--PGHAKT 146 (359)
Q Consensus 78 g~--------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~ 146 (359)
++ .||.|.+||+.+++.+..+ .|.+.+.+++|+|+++.+ ++++.|+.|.+||+.+++.+..+ ...+.+
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 349 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNT 349 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCe
Confidence 87 5889999999988766655 456688999999999765 56688999999999999887777 457899
Q ss_pred EEEcCCc--eEEEEc---------------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC-CC
Q 041916 147 LDFSQKG--LLAVGT---------------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-MG 208 (359)
Q Consensus 147 ~~~s~~g--l~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg 208 (359)
++|+|+| +++++. ||.|++||+.++ .....+..+. .+.+++|+|++++|++++. ++
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d~ 423 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEAGN-----QPTGLDVSPDNRYLVISDFLDH 423 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEECSS-----SEEEEEECTTSCEEEEEETTTT
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-cEEEEecCCC-----CCceEEEcCCCCEEEEEECCCC
Confidence 9999999 555554 469999997665 4444444332 6899999999998877654 66
Q ss_pred eEEEEE
Q 041916 209 WSSILV 214 (359)
Q Consensus 209 ~~~i~~ 214 (359)
.+.+|.
T Consensus 424 ~i~v~~ 429 (433)
T 3bws_A 424 QIRVYR 429 (433)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 555554
No 125
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.93 E-value=4.2e-24 Score=190.45 Aligned_cols=169 Identities=21% Similarity=0.275 Sum_probs=143.3
Q ss_pred CeEEEeCCCc--EEEEeccCCCe-EEEEEecCC--CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 1 YPYIYNRDGT--ELHCLKEHGAV-LKLQFLRNH--FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 1 ~v~iwd~~g~--~~~~l~~h~~~-~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
.+++||..+. ....+.+|... .+++|++++ .++++++.|+.|++||+.+++++..+.+|.++|++++|+|++.+|
T Consensus 151 ~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 230 (340)
T ss_dssp CEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred eEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEE
Confidence 4789993333 33445677776 999998864 678999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------------cCC
Q 041916 76 SLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------------PGH 143 (359)
Q Consensus 76 ~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~ 143 (359)
++|+.||.|++||+++..++..+.. ...|.+++|+|++.++ +++.|+.|++||++++..+..+ ...
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~ 308 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ 308 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCC
T ss_pred EEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC
Confidence 9999999999999999988888765 4679999999987655 5567899999999988766554 246
Q ss_pred ceeEEEcCCc--eEEEEcCCcEEEEcCCCC
Q 041916 144 AKTLDFSQKG--LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~~d~~i~i~d~~~~ 171 (359)
|++++|+|+| +++++.||.|+|||+.+|
T Consensus 309 v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 309 CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 8999999999 788889999999998776
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=8.4e-24 Score=194.59 Aligned_cols=199 Identities=10% Similarity=0.065 Sum_probs=158.6
Q ss_pred CeEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCC---eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFG---QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
.|++||.+|..+..+..|... .+++|+|||++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|+.|+
T Consensus 160 ~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la 238 (415)
T 2hqs_A 160 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLA 238 (415)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred eEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEE
Confidence 378999667777788888876 9999999999999999875 9999999998875 5667888999999999999877
Q ss_pred -EEeCCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCceeeEec--cCCceeEE
Q 041916 77 -LGHSGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-EC--KIKIWDLRKYEVLQTL--PGHAKTLD 148 (359)
Q Consensus 77 -sg~~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~--~~~i~~~~ 148 (359)
+++.||. |.+||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|.+||+.++...... ...+.+++
T Consensus 239 ~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~ 317 (415)
T 2hqs_A 239 FALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDAD 317 (415)
T ss_dssp EEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred EEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeE
Confidence 6666654 99999988765 567788889999999999999998886 44 7888899887643322 34678999
Q ss_pred EcCCc--eEEEEcC---CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 149 FSQKG--LLAVGTG---SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 149 ~s~~g--l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
|+|+| +++++.+ ..|.+||+.++. . ..+..+. .+.+++|+|+|++|++++.++
T Consensus 318 ~spdG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~l~~~~-----~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 318 VSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTF-----LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp ECTTSSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSS-----SCEEEEECTTSSEEEEEEEET
T ss_pred ECCCCCEEEEEECcCCceEEEEEECCCCC-E-EEecCCC-----CcCCeEEcCCCCEEEEEEcCC
Confidence 99999 5555543 589999987652 2 3333331 689999999999998887765
No 127
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.93 E-value=6.9e-24 Score=190.75 Aligned_cols=167 Identities=16% Similarity=0.269 Sum_probs=141.1
Q ss_pred CeEEEe-CC-CcEE-EEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEE--cCCCCE
Q 041916 1 YPYIYN-RD-GTEL-HCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRV--NPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~-g~~~-~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--sp~~~~ 74 (359)
.|+||| .+ +..+ ..+.+|... ++++|+|++.+|++++.||.|++||+.+++.+. +..|...|.+++| +|++.+
T Consensus 65 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~ 143 (368)
T 3mmy_A 65 DVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSC 143 (368)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEE
T ss_pred cEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCE
Confidence 378999 54 6655 788889887 999999999999999999999999999988766 5669999999999 899999
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEE--------------------------------------------------------
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKM-------------------------------------------------------- 98 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~-------------------------------------------------------- 98 (359)
|++|+.||.|++||+++++++..+
T Consensus 144 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKD 223 (368)
T ss_dssp EEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEEC
T ss_pred EEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEccc
Confidence 999999999999998776533222
Q ss_pred ----------------------------------eccCC------------CeEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 041916 99 ----------------------------------LCHQG------------PVSALAFHPNGHLMATSGKECKIKIWDLR 132 (359)
Q Consensus 99 ----------------------------------~~h~~------------~v~~i~~~~~~~~l~~~~~d~~i~iwd~~ 132 (359)
.+|.. .|++++|+|++++|++++.||.|++||+.
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence 22322 69999999999999999999999999999
Q ss_pred CceeeEec---cCCceeEEEcCCc--eEEEEcCCcEEEEcC
Q 041916 133 KYEVLQTL---PGHAKTLDFSQKG--LLAVGTGSFVQILGD 168 (359)
Q Consensus 133 ~~~~~~~~---~~~i~~~~~s~~g--l~~~~~d~~i~i~d~ 168 (359)
+++++..+ ...|.+++|+|+| +++++.|+....|+.
T Consensus 304 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 304 ARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp TTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred CCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 99998888 4579999999999 777877775555553
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.89 E-value=6.6e-22 Score=181.93 Aligned_cols=198 Identities=14% Similarity=0.028 Sum_probs=151.8
Q ss_pred eEEEeC---CCcEE--EEeccCCCe-EEEEEec--------------CCCEEEEEecC------CeEEEEECCCCeEEEE
Q 041916 2 PYIYNR---DGTEL--HCLKEHGAV-LKLQFLR--------------NHFLLASINKF------GQLRYQDVTMGEIVGN 55 (359)
Q Consensus 2 v~iwd~---~g~~~--~~l~~h~~~-~~l~~s~--------------~~~~l~s~~~d------g~i~iwd~~~~~~~~~ 55 (359)
|+|||. +|+++ ..+.+|... ..+++++ .+..++.++.+ +.|++||+. +.....
T Consensus 95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~ 173 (415)
T 2hqs_A 95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYD-GYNQFV 173 (415)
T ss_dssp EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETT-SCSCEE
T ss_pred EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCC-CCCCEE
Confidence 789995 67776 458888775 6666664 15566665554 799999997 455677
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE-EEeCCC--eEEEE
Q 041916 56 FRTGLGRTDVMRVNPFNGVVSLGHSGG---TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA-TSGKEC--KIKIW 129 (359)
Q Consensus 56 ~~~~~~~v~~~~~sp~~~~l~sg~~dg---~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-~~~~d~--~i~iw 129 (359)
+..|...+.+++|+|+|+.|++++.++ .|++||+.+++.. .+..|.+.+.+++|+|||++|+ +++.|+ .|++|
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~ 252 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 252 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEE
Confidence 788889999999999999999999875 9999999988764 5667888999999999999887 566555 49999
Q ss_pred EcCCceeeEec--cCCceeEEEcCCc--eEEEEc-CC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 130 DLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGT-GS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 130 d~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
|+.+++..... .+.+.+++|+|+| +++++. ++ .|.+||+.++. ...+..+. ..+.+++|+|+|++|+
T Consensus 253 d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~----~~~~~~~~spdG~~l~ 326 (415)
T 2hqs_A 253 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEG----SQNQDADVSSDGKFMV 326 (415)
T ss_dssp ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSS----SEEEEEEECTTSSEEE
T ss_pred ECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCC----CcccCeEECCCCCEEE
Confidence 99987764332 4568999999999 555554 34 68888876652 23333333 2789999999999998
Q ss_pred EEcCC
Q 041916 203 IGHSM 207 (359)
Q Consensus 203 ~~~~d 207 (359)
+++.+
T Consensus 327 ~~~~~ 331 (415)
T 2hqs_A 327 MVSSN 331 (415)
T ss_dssp EEEEC
T ss_pred EEECc
Confidence 87765
No 129
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=2e-21 Score=169.03 Aligned_cols=200 Identities=12% Similarity=0.001 Sum_probs=147.7
Q ss_pred CeEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecC-CCCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTG-LGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~sp~~~~l~ 76 (359)
.|++|| .++... .+..|... .+++|+|++.+|++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++.+|+
T Consensus 23 ~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 100 (297)
T 2ojh_A 23 SIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYA 100 (297)
T ss_dssp EEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEE
T ss_pred eEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEE
Confidence 378999 555554 45556655 9999999999999986 78999999999 8777666555 36789999999999999
Q ss_pred EEe--CCCe--EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE-EEeCCCeEEEEEcC--CceeeEec--cCCceeE
Q 041916 77 LGH--SGGT--VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA-TSGKECKIKIWDLR--KYEVLQTL--PGHAKTL 147 (359)
Q Consensus 77 sg~--~dg~--v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-~~~~d~~i~iwd~~--~~~~~~~~--~~~i~~~ 147 (359)
+++ .++. |.+|++.++. ...+..+ ..+.+++|+|++++|+ +++.++.+.+|++. ++...... ...+.++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 178 (297)
T 2ojh_A 101 ISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGP 178 (297)
T ss_dssp EEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEE
T ss_pred EEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccc
Confidence 998 3344 4445555544 3444433 3589999999999877 77789999999864 34332222 4578999
Q ss_pred EEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 148 DFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 148 ~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+|+|+| +++++ .++.+.+|++.........+..+.. .+.+++|+|++++|++++.++
T Consensus 179 ~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~ 238 (297)
T 2ojh_A 179 DYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAY----GDWFPHPSPSGDKVVFVSYDA 238 (297)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSE----EEEEEEECTTSSEEEEEEEET
T ss_pred eECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCc----ccCCeEECCCCCEEEEEEcCC
Confidence 999999 45455 4788999986533344555555543 789999999999998887763
No 130
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.88 E-value=1.5e-21 Score=180.32 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=144.2
Q ss_pred eEEEEEecCCCEEE----EEecCCeEEEEECCCC--------eE---EEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 041916 21 VLKLQFLRNHFLLA----SINKFGQLRYQDVTMG--------EI---VGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTV 84 (359)
Q Consensus 21 ~~~l~~s~~~~~l~----s~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v 84 (359)
+++++|+|++.+|+ +|+.|+.|++||+.++ +. +..+.+|...|.+++|+|+ +.+|++|+.||+|
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v 174 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI 174 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence 59999999999999 7888999999998764 22 4555678999999999998 7899999999999
Q ss_pred EEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------c----CCceeEEEcCCc-
Q 041916 85 TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------P----GHAKTLDFSQKG- 153 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~----~~i~~~~~s~~g- 153 (359)
++||++++..+....+|...|++++|+|+|++|++|+.||+|++||++ +.....+ . ..+.+++|++++
T Consensus 175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~ 253 (434)
T 2oit_A 175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV 253 (434)
T ss_dssp EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence 999999887766677889999999999999999999999999999999 4444433 1 167899999998
Q ss_pred eEEE--EcCC------cEEEEcCCCCCCc-cceeecccC------CCCcceEEEEEeeCCCEEEEEcCC-CeEEEEEcCC
Q 041916 154 LLAV--GTGS------FVQILGDFSGSHN-YSRYMGHSM------VKGYQIGKVSFRPYEDVLGIGHSM-GWSSILVPGS 217 (359)
Q Consensus 154 l~~~--~~d~------~i~i~d~~~~~~~-~~~~~~~~~------~~~~~v~~~~~~p~~~~l~~~~~d-g~~~i~~~~~ 217 (359)
++++ +.+| .+++|++...... ...+..+.. ....+-..+.+.++.+++++++.. +.+.++....
T Consensus 254 ~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~ 333 (434)
T 2oit_A 254 FAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQS 333 (434)
T ss_dssp EEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred EEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecC
Confidence 4432 2333 3899998654211 111111110 011122334455788877766654 4567766443
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=2.5e-20 Score=166.94 Aligned_cols=207 Identities=10% Similarity=0.074 Sum_probs=161.8
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCC---------eEEEEEcC
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGR---------TDVMRVNP 70 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------v~~~~~sp 70 (359)
|++|| .+++.+..+.....+.+++|+|++.+++ ++..++.|.+||+.+++.+..+..+... +.+++|+|
T Consensus 71 v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (353)
T 3vgz_A 71 VYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD 150 (353)
T ss_dssp EEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET
T ss_pred EEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC
Confidence 78999 8898888888766678999999998554 4555799999999999998888765432 68899999
Q ss_pred CCCEEEEEe--CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-------
Q 041916 71 FNGVVSLGH--SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------- 141 (359)
Q Consensus 71 ~~~~l~sg~--~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------- 141 (359)
+++.+++++ .++.|.+||+.+++.+..+..+...+.+++|+|+|+++++++.++.|.+||+.+++.+..+.
T Consensus 151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 230 (353)
T 3vgz_A 151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKE 230 (353)
T ss_dssp TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSC
T ss_pred CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCC
Confidence 998777765 48899999999998888876556668899999999999999999999999999998877662
Q ss_pred CCceeEEEcCCc--eEEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEc
Q 041916 142 GHAKTLDFSQKG--LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVP 215 (359)
Q Consensus 142 ~~i~~~~~s~~g--l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~ 215 (359)
..+.+++|+|+| +++++. ++.|.+||+.++ .....+... ....++|+|++++++++. .++.+.+|..
T Consensus 231 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~------~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 301 (353)
T 3vgz_A 231 HFFINISLDTARQRAFITDSKAAEVLVVDTRNG-NILAKVAAP------ESLAVLFNPARNEAYVTHRQAGKVSVIDA 301 (353)
T ss_dssp CCEEEEEEETTTTEEEEEESSSSEEEEEETTTC-CEEEEEECS------SCCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cccceEEECCCCCEEEEEeCCCCEEEEEECCCC-cEEEEEEcC------CCceEEECCCCCEEEEEECCCCeEEEEEC
Confidence 135679999999 555554 489999998666 444444332 225689999998655444 4555555543
No 132
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.88 E-value=1e-20 Score=169.36 Aligned_cols=202 Identities=7% Similarity=-0.030 Sum_probs=162.3
Q ss_pred CeEEEe-CCCcEEEEeccCCC----------eEEEEEecCCCEEEEEe--cCCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGA----------VLKLQFLRNHFLLASIN--KFGQLRYQDVTMGEIVGNFRTGLGRTDVMR 67 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~----------~~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 67 (359)
.|.+|| .+++.+..+..+.. +.+++|+|++.++++++ .++.|.+||+.+++.+..+..+...+.+++
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 378999 88888888876541 58899999998877765 478999999999999888876666688999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec----cCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEec-c
Q 041916 68 VNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC----HQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTL-P 141 (359)
Q Consensus 68 ~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~-~ 141 (359)
|+|++..+++++.++.|.+||+.+++.+..+.. +...+.+++|+|+|+++++++. ++.|.+||+.+++.+..+ .
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 999999999999999999999999988777664 4556889999999998777665 489999999999887777 2
Q ss_pred CCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 142 GHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 142 ~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
+....++|+|+| +++++ .++.|.+||+.++ .....+... ..+.+++|+|+|++|+++..++
T Consensus 272 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 272 PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSY-KVVKTFDTP-----THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SSCCCEEEETTTTEEEEEETTTTEEEEEETTTT-EEEEEEECC-----SEEEEEEECTTSCEEEEEEECC
T ss_pred CCCceEEECCCCCEEEEEECCCCeEEEEECCCC-eEEEEEecC-----CCCCeEEEcCCCCEEEEEEccc
Confidence 334789999999 55555 5799999997666 444444332 2689999999999777766554
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.88 E-value=5.4e-20 Score=174.56 Aligned_cols=214 Identities=9% Similarity=0.030 Sum_probs=161.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEEC--CCCeEEEEEecCCCCeEEEEEcC----CCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDV--TMGEIVGNFRTGLGRTDVMRVNP----FNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~sp----~~~ 73 (359)
+|.+|| .+++++.++..+..+.+++|+|||++|++++.|+.|.+||+ .+++++..+.. ...+..++|+| +|+
T Consensus 160 ~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~ 238 (543)
T 1nir_A 160 QIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDR 238 (543)
T ss_dssp EEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTT
T ss_pred eEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCC
Confidence 478999 89999999985555899999999999999999999999999 88999988885 45679999999 999
Q ss_pred EEEEEe-CCCeEEEEeCCCCcceEEEec----------cCC-CeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeE--
Q 041916 74 VVSLGH-SGGTVTMWKPTTAAPLIKMLC----------HQG-PVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQ-- 138 (359)
Q Consensus 74 ~l~sg~-~dg~v~lwd~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~-- 138 (359)
++++++ .+++|.+||..+++++..+.. |.. .+.++.++|++.. +++...++.|.+||+.+.+.+.
T Consensus 239 ~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~ 318 (543)
T 1nir_A 239 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 318 (543)
T ss_dssp EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEE
T ss_pred EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeE
Confidence 999888 489999999999998888764 233 6899999997765 5666788999999998865433
Q ss_pred ec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEEc-CCCeEE
Q 041916 139 TL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIGH-SMGWSS 211 (359)
Q Consensus 139 ~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~~-~dg~~~ 211 (359)
.+ ...+.++.|+|+| +++++ .+++|.+||+.++ +....+.....++......+ ++|+ +.++++++ .++.+.
T Consensus 319 ~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~ 396 (543)
T 1nir_A 319 SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSIS 396 (543)
T ss_dssp EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEE
T ss_pred EeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEE
Confidence 33 3467899999999 55555 4789999998776 45554443111111123333 4676 55555554 456666
Q ss_pred EEEcCC
Q 041916 212 ILVPGS 217 (359)
Q Consensus 212 i~~~~~ 217 (359)
+|....
T Consensus 397 v~d~~~ 402 (543)
T 1nir_A 397 LIGTDP 402 (543)
T ss_dssp EEECCT
T ss_pred EEEeCC
Confidence 665543
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=3.6e-20 Score=164.58 Aligned_cols=208 Identities=9% Similarity=0.033 Sum_probs=154.5
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEec-CCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINK-FGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~s 77 (359)
.|++|| .+|+.+..+..+....+++|+|++++|++++. ++.|.+||+.+++. ...+..+..+..+++|+|++++|++
T Consensus 21 ~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 100 (331)
T 3u4y_A 21 RISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT 100 (331)
T ss_dssp EEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE
T ss_pred eEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEE
Confidence 378999 88888888776544349999999987666655 88999999999987 7777777777666999999999886
Q ss_pred EeCCC---eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCe-EEEEEcCCceee-----Eec--cCCce
Q 041916 78 GHSGG---TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECK-IKIWDLRKYEVL-----QTL--PGHAK 145 (359)
Q Consensus 78 g~~dg---~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~-i~iwd~~~~~~~-----~~~--~~~i~ 145 (359)
+..++ .|.+||+.+++.+..+..+ ....+++|+|+|++++++ ..++. |.+|++.....+ ..+ ...+.
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~ 179 (331)
T 3u4y_A 101 VTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF 179 (331)
T ss_dssp CCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE
T ss_pred ecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc
Confidence 55553 8999999999887777654 446899999999866554 55578 999998753222 122 34578
Q ss_pred eEEEcCCc--eEEEE-cCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCCEEEEEcC-CCeEEEEEc
Q 041916 146 TLDFSQKG--LLAVG-TGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSILVP 215 (359)
Q Consensus 146 ~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i~~~ 215 (359)
.++|+|+| +++++ .++.|.+||+.++ .. ...+... ..+..++|+|+|++|++++. ++.+.+|..
T Consensus 180 ~~~~spdg~~l~v~~~~~~~v~v~d~~~~-~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 180 NITFTPDGNFAFVANLIGNSIGILETQNP-ENITLLNAVGTN-----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSST-TSCEEEEEEECS-----SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEECCCC-cccceeeeccCC-----CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 99999999 55555 5789999998766 34 3333322 26788999999997766554 444455443
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=3.5e-20 Score=164.64 Aligned_cols=206 Identities=10% Similarity=0.023 Sum_probs=156.3
Q ss_pred CeEEEe-CCCcEEEEeccCC---CeEEEEEecCCCEE-EEEecCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEcC
Q 041916 1 YPYIYN-RDGTELHCLKEHG---AVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEIVGNFRTGL-----GRTDVMRVNP 70 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~---~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~sp 70 (359)
.|++|| .+++.+..+.... .+.+++|+|++.++ ++++.++.|.+||+.+++.+..+.... ..+.+++|+|
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 91 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP 91 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECT
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECC
Confidence 378999 7888888887555 57899999999765 555668899999999999887776421 2577899999
Q ss_pred CCCEEEEEe------------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE
Q 041916 71 FNGVVSLGH------------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ 138 (359)
Q Consensus 71 ~~~~l~sg~------------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 138 (359)
+|..|++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+|++|+++ ++.|.+||+.+++.+.
T Consensus 92 dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~ 168 (337)
T 1pby_B 92 DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVE 168 (337)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEE
T ss_pred CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEee
Confidence 999888886 579999999998887777654 4457889999999988888 6889999998876654
Q ss_pred ecc---------------------------------------------------------------------CCceeEEE
Q 041916 139 TLP---------------------------------------------------------------------GHAKTLDF 149 (359)
Q Consensus 139 ~~~---------------------------------------------------------------------~~i~~~~~ 149 (359)
.+. ..+.+++|
T Consensus 169 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 248 (337)
T 1pby_B 169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV 248 (337)
T ss_dssp EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEE
Confidence 331 01235899
Q ss_pred cCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 150 SQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 150 s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+|+| .+.++ ++.|.+||+.++ .....+... ..+.+++|+|++++|++++.++.+.+|...
T Consensus 249 s~dg~~l~~~-~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 249 NPAKTRAFGA-YNVLESFDLEKN-ASIKRVPLP-----HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp CTTSSEEEEE-ESEEEEEETTTT-EEEEEEECS-----SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CCCCCEEEEe-CCeEEEEECCCC-cCcceecCC-----CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 9999 44444 799999997665 343333322 257899999999988887777766666543
No 136
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=5.4e-21 Score=176.65 Aligned_cols=181 Identities=11% Similarity=-0.029 Sum_probs=138.6
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCC----------eEEEE-----EecCCCCeEEEEEcCCCCEEE----EEeCC
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMG----------EIVGN-----FRTGLGRTDVMRVNPFNGVVS----LGHSG 81 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~-----~~~~~~~v~~~~~sp~~~~l~----sg~~d 81 (359)
.+.+++++++.++++++.++ |++|+.... ..+.. .-.+...|.+++|+|++.+|+ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 48999999999999999887 889875311 01111 112556799999999999999 78899
Q ss_pred CeEEEEeCCCC--------cc---eEEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec---cCCcee
Q 041916 82 GTVTMWKPTTA--------AP---LIKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKT 146 (359)
Q Consensus 82 g~v~lwd~~~~--------~~---~~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~ 146 (359)
+.|++||+.++ ++ +..+.+|.+.|++++|+|+ +.+|++++.||+|++||++++..+... ...+.+
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTS 197 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeE
Confidence 99999998654 22 3344579999999999997 899999999999999999998665444 457999
Q ss_pred EEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccC---CCCcceEEEEEeeCCCEEEEE
Q 041916 147 LDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSM---VKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~~~ 204 (359)
++|+|+| +++++.||.|++||+. + .....+..|.. .+...|.+++|++++.++++.
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEE
Confidence 9999999 7888899999999976 3 33333333321 012379999999988877553
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.86 E-value=1.8e-19 Score=160.44 Aligned_cols=214 Identities=9% Similarity=0.049 Sum_probs=147.8
Q ss_pred CeEEEe-C-CCc--EEEEeccCCCeEEEEEecCCCEEEEEecC-CeEEEEECC--CCe--EEEEEecCCCCeEEEEEcCC
Q 041916 1 YPYIYN-R-DGT--ELHCLKEHGAVLKLQFLRNHFLLASINKF-GQLRYQDVT--MGE--IVGNFRTGLGRTDVMRVNPF 71 (359)
Q Consensus 1 ~v~iwd-~-~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~v~~~~~sp~ 71 (359)
.|++|+ . +|. .+..+.....+.+++|+|++.+|++++.+ +.|.+|++. ++. .+..+..+. .+.+++|+|+
T Consensus 16 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~d 94 (343)
T 1ri6_A 16 QIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQ 94 (343)
T ss_dssp EEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTT
T ss_pred eEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCC
Confidence 378998 3 353 34444444445999999999988888876 999999997 555 344555444 7899999999
Q ss_pred CCEEEEEe-CCCeEEEEeCC---CCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-ceeeE----ec-
Q 041916 72 NGVVSLGH-SGGTVTMWKPT---TAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK-YEVLQ----TL- 140 (359)
Q Consensus 72 ~~~l~sg~-~dg~v~lwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~~~----~~- 140 (359)
+.+|++++ .++.|.+||+. +...+..+..+ ..+.+++|+|+|+++++++ .++.|.+||+.+ ++... .+
T Consensus 95 g~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 173 (343)
T 1ri6_A 95 GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT 173 (343)
T ss_dssp SSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc
Confidence 99776665 48899999994 33344444433 4588999999999988887 899999999987 54321 22
Q ss_pred ---cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc---ceeecccC--CCCcceEEEEEeeCCCEEEEE-cCCC
Q 041916 141 ---PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY---SRYMGHSM--VKGYQIGKVSFRPYEDVLGIG-HSMG 208 (359)
Q Consensus 141 ---~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~-~~dg 208 (359)
...+.+++|+|+| +++++ .++.|.+|++....... ........ .....+.+++|+|++++|+++ ..++
T Consensus 174 ~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~ 253 (343)
T 1ri6_A 174 TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS 253 (343)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT
T ss_pred cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC
Confidence 2357889999999 54555 67899999975321111 11111100 012356789999999877643 4566
Q ss_pred eEEEEEcC
Q 041916 209 WSSILVPG 216 (359)
Q Consensus 209 ~~~i~~~~ 216 (359)
.+.+|...
T Consensus 254 ~i~v~d~~ 261 (343)
T 1ri6_A 254 LITVFSVS 261 (343)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 66666544
No 138
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=9.6e-20 Score=162.70 Aligned_cols=204 Identities=11% Similarity=-0.034 Sum_probs=151.7
Q ss_pred CeEEEe-CCCcEEEEeccCC--CeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCC------CCeEEEEEcC
Q 041916 1 YPYIYN-RDGTELHCLKEHG--AVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGL------GRTDVMRVNP 70 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~--~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~------~~v~~~~~sp 70 (359)
.|++|| .+++.+..+..+. .+..++|+|++++++ +++.++.|.+||+.+++.+..+..+. ..+.+++|+|
T Consensus 22 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~sp 101 (349)
T 1jmx_B 22 NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISP 101 (349)
T ss_dssp EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECT
T ss_pred eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECC
Confidence 378999 8888888888766 568999999998654 55578999999999999887776433 2378999999
Q ss_pred CCCEEEEEeCC------------CeEEEEeCCCCc---ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce
Q 041916 71 FNGVVSLGHSG------------GTVTMWKPTTAA---PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE 135 (359)
Q Consensus 71 ~~~~l~sg~~d------------g~v~lwd~~~~~---~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~ 135 (359)
+|++|++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|+|+ +++++. .|.+||+.+++
T Consensus 102 dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~ 177 (349)
T 1jmx_B 102 DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGK 177 (349)
T ss_dssp TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCC
T ss_pred CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCc
Confidence 99999988865 899999998754 333443 344688999999999 666544 49999999887
Q ss_pred eeEeccC-----------------------------------------------------------------------Cc
Q 041916 136 VLQTLPG-----------------------------------------------------------------------HA 144 (359)
Q Consensus 136 ~~~~~~~-----------------------------------------------------------------------~i 144 (359)
.+..++. .+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (349)
T 1jmx_B 178 YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY 257 (349)
T ss_dssp EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCE
T ss_pred eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcc
Confidence 6655421 23
Q ss_pred eeEEEcC-Cc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 145 KTLDFSQ-KG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 145 ~~~~~s~-~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
.+++|+| +| ++.++ ++.|.+||+.++ .....+... ..+.+++|+|++++|++++.++.+.+|..
T Consensus 258 ~~~~~sp~dg~~l~~~-~~~v~~~d~~~~-~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 258 FTGLRSPKDPNQIYGV-LNRLAKYDLKQR-KLIKAANLD-----HTYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp EEEEECSSCTTEEEEE-ESEEEEEETTTT-EEEEEEECS-----SCCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred eeeEecCCCCCEEEEE-cCeEEEEECccC-eEEEEEcCC-----CCccceEECCCCCEEEEecCCCeEEEEec
Confidence 4567789 88 44444 889999998765 333333322 15778999999998877766666666554
No 139
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=3.4e-19 Score=158.65 Aligned_cols=210 Identities=13% Similarity=0.148 Sum_probs=144.1
Q ss_pred eEEEe-C--CCc--EEEEeccCCCeEEEEEecCCCEEEEEec-CCeEEEEECC---CCeEEEEEecCCCCeEEEEEcCCC
Q 041916 2 PYIYN-R--DGT--ELHCLKEHGAVLKLQFLRNHFLLASINK-FGQLRYQDVT---MGEIVGNFRTGLGRTDVMRVNPFN 72 (359)
Q Consensus 2 v~iwd-~--~g~--~~~~l~~h~~~~~l~~s~~~~~l~s~~~-dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~~ 72 (359)
|.+|+ . +|. .+..+..+..+.+++|+|++.+|++++. ++.|.+||+. ++..+..+..+ ..+.+++|+|++
T Consensus 62 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg 140 (343)
T 1ri6_A 62 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDN 140 (343)
T ss_dssp EEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTS
T ss_pred EEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCC
Confidence 67888 4 555 3455665566699999999998866654 8899999994 33455555544 468899999999
Q ss_pred CEEEEEe-CCCeEEEEeCCC-CcceE----EEec-cCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC--cee--eEec
Q 041916 73 GVVSLGH-SGGTVTMWKPTT-AAPLI----KMLC-HQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK--YEV--LQTL 140 (359)
Q Consensus 73 ~~l~sg~-~dg~v~lwd~~~-~~~~~----~~~~-h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~--~~~--~~~~ 140 (359)
.++++++ .++.|.+||+.+ ++... .+.. ....+.+++|+|+|+++++++ .++.|.+||+.. +.. ...+
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 9888777 899999999987 54322 2232 234788999999999876655 789999999954 332 2222
Q ss_pred ---cC------CceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CC
Q 041916 141 ---PG------HAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SM 207 (359)
Q Consensus 141 ---~~------~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~d 207 (359)
+. .+..++|+|+| +++++ .++.|.+||+.........+..... .. .+.+++|+|++++|++++ .+
T Consensus 221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~~~~ 298 (343)
T 1ri6_A 221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ET-QPRGFNVDHSGKYLIAAGQKS 298 (343)
T ss_dssp ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SS-SCCCEEECTTSSEEEEECTTT
T ss_pred cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CC-ccceEEECCCCCEEEEecCCC
Confidence 11 34579999999 44444 6799999997632112222211111 11 488999999999877766 35
Q ss_pred CeEEEEE
Q 041916 208 GWSSILV 214 (359)
Q Consensus 208 g~~~i~~ 214 (359)
+.+.+|.
T Consensus 299 ~~v~v~~ 305 (343)
T 1ri6_A 299 HHISVYE 305 (343)
T ss_dssp CEEEEEE
T ss_pred CeEEEEE
Confidence 5555553
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.85 E-value=1.2e-19 Score=172.19 Aligned_cols=184 Identities=9% Similarity=0.047 Sum_probs=147.0
Q ss_pred EEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCcceEEEeccC
Q 041916 25 QFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP--TTAAPLIKMLCHQ 102 (359)
Q Consensus 25 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~--~~~~~~~~~~~h~ 102 (359)
+|+|++.++++++.|++|.+||..+++++..+..+.. +++++|+|+|++|++++.|+.|.+||+ .+++.+..+.. .
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g 221 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-G 221 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-C
Confidence 4889999999999999999999999999999985444 899999999999999999999999999 78888888774 4
Q ss_pred CCeEEEEEcC----CCCEEEEEeC-CCeEEEEEcCCceeeEeccC--------------CceeEEEcCCc---eEEEEcC
Q 041916 103 GPVSALAFHP----NGHLMATSGK-ECKIKIWDLRKYEVLQTLPG--------------HAKTLDFSQKG---LLAVGTG 160 (359)
Q Consensus 103 ~~v~~i~~~~----~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~--------------~i~~~~~s~~g---l~~~~~d 160 (359)
..+..++|+| ||+++++++. +++|.+||..+++++..+.. .+.++.++|++ +++...+
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~ 301 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET 301 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCC
Confidence 4579999999 9999999884 89999999999988877621 46789999987 4444567
Q ss_pred CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEE
Q 041916 161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILV 214 (359)
Q Consensus 161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~ 214 (359)
+.|.+||+.+..........+ +..+.+++|+|+|++|++++ .++.+.+|.
T Consensus 302 g~i~vvd~~~~~~l~~~~i~~----~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSIGA----APFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp TEEEEEECTTSSSCEEEEEEC----CSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CeEEEEEecCCCcceeEEecc----CcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 999999977653222112222 22688899999999776554 456555544
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=3.6e-19 Score=158.10 Aligned_cols=211 Identities=10% Similarity=0.133 Sum_probs=149.2
Q ss_pred eEEEe-CCCcE-EEEeccCCCeEE-EEEecCCCEEEEEecCC---eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTE-LHCLKEHGAVLK-LQFLRNHFLLASINKFG---QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~-~~~l~~h~~~~~-l~~s~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|++|| .++.. ...+..+..+.. ++|+|++++|+++..++ .|.+||+.+++.+..+..+ ..+.+++|+|+|++|
T Consensus 64 i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l 142 (331)
T 3u4y_A 64 LVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGL 142 (331)
T ss_dssp EEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCE
T ss_pred EEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEE
Confidence 78999 77777 778888888855 99999999998555443 8999999999988887755 456899999999754
Q ss_pred -EEEeCCCe-EEEEeCCCCcceE----EEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCcee---eEec--cCC
Q 041916 76 -SLGHSGGT-VTMWKPTTAAPLI----KMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEV---LQTL--PGH 143 (359)
Q Consensus 76 -~sg~~dg~-v~lwd~~~~~~~~----~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~---~~~~--~~~ 143 (359)
+++..++. |.+|++.....+. ..........+++|+|+|+++++++ .++.|.+||+.+++. +..+ ...
T Consensus 143 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~ 222 (331)
T 3u4y_A 143 ILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL 222 (331)
T ss_dssp EEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred EEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC
Confidence 45556688 9999987644332 1223345678999999999765555 689999999998887 6666 446
Q ss_pred ceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCc-cceeecc----cCCCCcceEEEEEeeCCCEEEEEcC-CCeEEEEE
Q 041916 144 AKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHN-YSRYMGH----SMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSILV 214 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~-~~~~~~~----~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i~~ 214 (359)
+..++|+|+| +++++ .++.|.+||+.++... +..+..+ .. .......++|+|++++|++++. ++.+.+|.
T Consensus 223 ~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 223 PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR-PLFGANQMALNKTETKLFISANISRELKVFT 301 (331)
T ss_dssp CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG-GGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC-CcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence 7899999999 44443 4578999998765220 1111111 11 1112356899999997755444 33444443
No 142
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=6.7e-20 Score=180.16 Aligned_cols=202 Identities=8% Similarity=0.016 Sum_probs=150.8
Q ss_pred CeEEEe-CCCcEEEEeccCCC----eEEEEEecCCCEEEEEecC---------CeEEEEECCCCeEEEEEe---cCCCCe
Q 041916 1 YPYIYN-RDGTELHCLKEHGA----VLKLQFLRNHFLLASINKF---------GQLRYQDVTMGEIVGNFR---TGLGRT 63 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~----~~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~---~~~~~v 63 (359)
+|++|| .+|+....+..|.. +.+++|||||++|++++.+ +.|.+||+.+++. ..+. .|...+
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~ 116 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKL 116 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccc
Confidence 489999 88888888887764 6999999999999998764 7889999998876 3443 334458
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe------------------EEEEEcCCCCEEEEEeCCC-
Q 041916 64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV------------------SALAFHPNGHLMATSGKEC- 124 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v------------------~~i~~~~~~~~l~~~~~d~- 124 (359)
..++|||||+.|++++. +.|++||+.+++.......+...+ .+++|+|||++|++++.|+
T Consensus 117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 89999999999999886 799999999887766555444333 7899999999999987553
Q ss_pred ---------------------------------eEEEEEcCCceeeEecc---------CCceeEEEcCCc-eE-EEEc-
Q 041916 125 ---------------------------------KIKIWDLRKYEVLQTLP---------GHAKTLDFSQKG-LL-AVGT- 159 (359)
Q Consensus 125 ---------------------------------~i~iwd~~~~~~~~~~~---------~~i~~~~~s~~g-l~-~~~~- 159 (359)
.|++||+.+++....+. ..+.+++||||| ++ +.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~ 275 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR 275 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence 79999999887544442 246889999999 44 4432
Q ss_pred ---CCcEEEEcCCCCCCccceeecccCCCCcce----EEEEEeeCCCEEEEE--cCCC
Q 041916 160 ---GSFVQILGDFSGSHNYSRYMGHSMVKGYQI----GKVSFRPYEDVLGIG--HSMG 208 (359)
Q Consensus 160 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v----~~~~~~p~~~~l~~~--~~dg 208 (359)
+..|.+||+.++ .....+..+. ...+ ..++|+|+|+.|+.. ..+|
T Consensus 276 ~~~~~~i~~~d~~~g-~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 276 AQNVSILTLCDATTG-VCTKKHEDES---EAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp TSCEEEEEEEETTTC-CEEEEEEEEC---SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCCeEEEEEEeCCCC-cceEEEEecc---CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 257999997766 3333333321 1123 378999999977754 4556
No 143
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=9.7e-20 Score=179.54 Aligned_cols=180 Identities=8% Similarity=0.070 Sum_probs=141.5
Q ss_pred eEEEEEecCCCEEEEEec-CC-----eEEEEECCCCeEEEEEecCCC------------------------CeEEEEEcC
Q 041916 21 VLKLQFLRNHFLLASINK-FG-----QLRYQDVTMGEIVGNFRTGLG------------------------RTDVMRVNP 70 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~~~~sp 70 (359)
+.+++|||||++|++++. |+ .|++||+.+++....+..+.. .+.+++|||
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 589999999999999998 88 999999999987776665432 378999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc--ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC--C---
Q 041916 71 FNGVVSLGHSGGTVTMWKPTTAA--PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG--H--- 143 (359)
Q Consensus 71 ~~~~l~sg~~dg~v~lwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~--~--- 143 (359)
||++|++++. +.|.+||+.++. .+..+..|...+.+++|+|||++|++++. +.|++||+.++........ .
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~ 196 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIG 196 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEE
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCcccee
Confidence 9999999886 899999999873 44556678888999999999999999884 6999999998876654421 1
Q ss_pred --------------ceeEEEcCCc--eEEEEcCC---------------------------------cEEEEcCCC-CCC
Q 041916 144 --------------AKTLDFSQKG--LLAVGTGS---------------------------------FVQILGDFS-GSH 173 (359)
Q Consensus 144 --------------i~~~~~s~~g--l~~~~~d~---------------------------------~i~i~d~~~-~~~ 173 (359)
+.+++||||| +++++.|+ .|.+||+.+ + .
T Consensus 197 ~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-~ 275 (741)
T 2ecf_A 197 NGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA-Q 275 (741)
T ss_dssp ESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC-C
T ss_pred ccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC-c
Confidence 4789999999 66665554 788999766 5 3
Q ss_pred ccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
........ . +...+.+++| |||++|++++.
T Consensus 276 ~~~~~~~~-~-~~~~~~~~~~-pDg~~l~~~~~ 305 (741)
T 2ecf_A 276 TQWIDLGK-E-QDIYLARVNW-RDPQHLSFQRQ 305 (741)
T ss_dssp CEEECCCS-C-SSEEEEEEEE-EETTEEEEEEE
T ss_pred eEEecCCC-C-cceEEEEEEe-CCCCEEEEEEe
Confidence 33222220 0 2337999999 99999987654
No 144
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=4.8e-20 Score=160.26 Aligned_cols=200 Identities=12% Similarity=0.109 Sum_probs=146.0
Q ss_pred eEEEe-CC-CcEEEEeccCC-Ce-EEEEEecCCCEEEEEec--C--CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 2 PYIYN-RD-GTELHCLKEHG-AV-LKLQFLRNHFLLASINK--F--GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd-~~-g~~~~~l~~h~-~~-~~l~~s~~~~~l~s~~~--d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
|++|| .+ +.....+..|. .. .+++|+|++.+|++++. + ..|.+|++.++. ...+..+ ..+.+++|+|++.
T Consensus 64 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~ 141 (297)
T 2ojh_A 64 LYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGK 141 (297)
T ss_dssp EEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSS
T ss_pred EEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCC
Confidence 78999 66 77766666663 33 89999999999999883 3 455555555554 3444444 3588999999999
Q ss_pred EEE-EEeCCCeEEEEeCCC-CcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC-CceeeEec---cCCcee
Q 041916 74 VVS-LGHSGGTVTMWKPTT-AAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLR-KYEVLQTL---PGHAKT 146 (359)
Q Consensus 74 ~l~-sg~~dg~v~lwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~-~~~~~~~~---~~~i~~ 146 (359)
.|+ +++.++.+.||+++. ......+..+...+.+++|+|+|++|++++ .++.+.+|++. .+..+..+ ...+.+
T Consensus 142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 221 (297)
T 2ojh_A 142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWF 221 (297)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEE
T ss_pred EEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCC
Confidence 777 788899999998642 334556667888999999999999888766 58899999886 44445555 345788
Q ss_pred EEEcCCc--eEEEEcC-----------CcEEEEcCCCCCCccc--eeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 147 LDFSQKG--LLAVGTG-----------SFVQILGDFSGSHNYS--RYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d-----------~~i~i~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
++|+|+| +++++.+ +.|.+||+.++ .... .+..|.. .+.+++|+|++++|++++.+.
T Consensus 222 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 222 PHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVETLFDLFGGQG----TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEEEEEEEESTT----TSCSCCBCTTSSEEEEEEECC
T ss_pred eEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-CceeeeccCCCCc----ccccceECCCCCEEEEEEecc
Confidence 9999999 5555544 56999997665 3322 2224433 788999999999988877653
No 145
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.7e-18 Score=154.93 Aligned_cols=209 Identities=12% Similarity=0.123 Sum_probs=142.1
Q ss_pred eEEEe-CCCc--EEEEeccCCC-eEEEEEecCCCEEEEEe-cCCeEEEEECC-CCe--EEEEEecC---------CCCeE
Q 041916 2 PYIYN-RDGT--ELHCLKEHGA-VLKLQFLRNHFLLASIN-KFGQLRYQDVT-MGE--IVGNFRTG---------LGRTD 64 (359)
Q Consensus 2 v~iwd-~~g~--~~~~l~~h~~-~~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~--~~~~~~~~---------~~~v~ 64 (359)
|++|+ .+|. .+..+..+.. +..++|+|+|++|++++ .++.|.+||+. ++. .+..+... ...+.
T Consensus 65 v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 65 IAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp EEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred EEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence 78899 5555 3444444544 49999999999888887 68999999996 333 33333321 12488
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCC-CCcce--EEEeccC-CCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCC--cee-
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPT-TAAPL--IKMLCHQ-GPVSALAFHPNGHLMATS-GKECKIKIWDLRK--YEV- 136 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~-~~~~~--~~~~~h~-~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~--~~~- 136 (359)
+++|+|+|++++++..++.|.+|++. ++... ..+..+. ..+..++|+|||++++++ ..++.|.+|++.. +..
T Consensus 145 ~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~ 224 (347)
T 3hfq_A 145 YTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT 224 (347)
T ss_dssp EEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence 99999999977777778999999998 44332 2222222 357889999999976664 5688999999874 442
Q ss_pred -eEec---c------CCceeEEEcCCc--eEE-EEcCCcEEEEcCCCCC--CccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 137 -LQTL---P------GHAKTLDFSQKG--LLA-VGTGSFVQILGDFSGS--HNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 137 -~~~~---~------~~i~~~~~s~~g--l~~-~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
+..+ . ..+..++|+|+| +++ ...++.|.+|++.... ..+..+..+ +..+.+++|+|+|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~----~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE----GDFPRDFDLDPTEAFV 300 (347)
T ss_dssp EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS----SSCCCEEEECTTSSEE
T ss_pred EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC----CCCcCeEEECCCCCEE
Confidence 2222 2 236789999999 434 4457999999975332 122222222 2368899999999988
Q ss_pred EEEcCC-CeEEEEE
Q 041916 202 GIGHSM-GWSSILV 214 (359)
Q Consensus 202 ~~~~~d-g~~~i~~ 214 (359)
++++.+ +.+.+|.
T Consensus 301 ~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 301 VVVNQNTDNATLYA 314 (347)
T ss_dssp EEEETTTTEEEEEE
T ss_pred EEEEcCCCcEEEEE
Confidence 776654 5555553
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=1.3e-18 Score=155.84 Aligned_cols=212 Identities=12% Similarity=0.062 Sum_probs=140.1
Q ss_pred eEEEe-CCCcEE--EEeccCCCeEEEEEecCCCEEEEEec---CCeEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCC
Q 041916 2 PYIYN-RDGTEL--HCLKEHGAVLKLQFLRNHFLLASINK---FGQLRYQDVTMGE--IVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd-~~g~~~--~~l~~h~~~~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
|+.|| .+|... ..+.....+..++|+|+|+ |++++. ++.|.+||+.++. .+..+..+...+..++|+|+|+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~ 98 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ 98 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC
Confidence 44455 466543 3344445568999999999 555544 6899999998776 4445555677889999999999
Q ss_pred EEEEEe-CCCeEEEEeCCC-Cc--ceEEEec---------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-Cceee--
Q 041916 74 VVSLGH-SGGTVTMWKPTT-AA--PLIKMLC---------HQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEVL-- 137 (359)
Q Consensus 74 ~l~sg~-~dg~v~lwd~~~-~~--~~~~~~~---------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~-- 137 (359)
+|++++ .++.|.+|++.. +. .+..+.. +...+.+++|+|+|+++++...++.|.+||+. ++...
T Consensus 99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~ 178 (347)
T 3hfq_A 99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQ 178 (347)
T ss_dssp EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 888887 789999999963 22 2222221 11248899999999966666678899999998 45432
Q ss_pred Eec---c-CCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc---ceeecccC--CCCcceEEEEEeeCCCEEEE-E
Q 041916 138 QTL---P-GHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY---SRYMGHSM--VKGYQIGKVSFRPYEDVLGI-G 204 (359)
Q Consensus 138 ~~~---~-~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~---~~~~~~~~--~~~~~v~~~~~~p~~~~l~~-~ 204 (359)
..+ . ..+..++|+|+| +++++ .++.|.+|++....... ..+..... .....+..++|+|+|++|++ +
T Consensus 179 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~ 258 (347)
T 3hfq_A 179 SVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSN 258 (347)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEE
T ss_pred eeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEe
Confidence 222 2 256789999999 44444 56899999865421111 11221110 01135889999999997744 3
Q ss_pred cCCCeEEEEE
Q 041916 205 HSMGWSSILV 214 (359)
Q Consensus 205 ~~dg~~~i~~ 214 (359)
..++.+.+|.
T Consensus 259 ~~~~~v~v~~ 268 (347)
T 3hfq_A 259 RGYNTLAVFA 268 (347)
T ss_dssp ETTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 3455555554
No 147
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=2.3e-19 Score=175.93 Aligned_cols=201 Identities=10% Similarity=0.066 Sum_probs=146.5
Q ss_pred CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCC-----CeEEEEEecCCCC-----------
Q 041916 1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTM-----GEIVGNFRTGLGR----------- 62 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----------- 62 (359)
.|++|| .++... .+..+.. +.+++|||||++|+++ .++.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 378999 555544 4444544 4889999999999985 689999999998 7765544433332
Q ss_pred ---eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEeCCCCcceEEEe--ccCCC
Q 041916 63 ---TDVMRVNPFNGVVSLGH---------------------------------SGGTVTMWKPTTAAPLIKML--CHQGP 104 (359)
Q Consensus 63 ---v~~~~~sp~~~~l~sg~---------------------------------~dg~v~lwd~~~~~~~~~~~--~h~~~ 104 (359)
+.+++|||||++|++++ .++.|.+||+.+++...... .|...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 48999999999999987 44679999999886544332 46677
Q ss_pred eEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCceeeEec-----cC---CceeEEEcC--Cc--eEEEEcCCcEEEEc
Q 041916 105 VSALAFHPNGHLMATSGKEC-----KIKIWDLRKYEVLQTL-----PG---HAKTLDFSQ--KG--LLAVGTGSFVQILG 167 (359)
Q Consensus 105 v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~~~~-----~~---~i~~~~~s~--~g--l~~~~~d~~i~i~d 167 (359)
+.+++|+|||++|++++.++ .|.+||+.+++....+ .. .+.+++|+| +| +++++.++.+.||+
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEE
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEE
Confidence 99999999999999988775 8999999998333222 11 246789999 99 44555678888887
Q ss_pred CCCCCCccceeecccCCCCcceEE-EEEeeCCCEEEEEcCC
Q 041916 168 DFSGSHNYSRYMGHSMVKGYQIGK-VSFRPYEDVLGIGHSM 207 (359)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d 207 (359)
+.........+..+.. .+.+ ++|+|+++.|++++.+
T Consensus 340 ~~~~~~~~~~l~~~~~----~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 340 YDTTGRLIRQVTKGEW----EVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp EETTSCEEEECCCSSS----CEEEEEEECTTSSEEEEEESS
T ss_pred EECCCCEEEecCCCCe----EEEeeeEEcCCCCEEEEEecC
Confidence 5433344455554433 5766 7999999987665544
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=5e-19 Score=173.55 Aligned_cols=191 Identities=11% Similarity=0.112 Sum_probs=140.0
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----Ccc
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-----AAP 94 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-----~~~ 94 (359)
.+.+++|+|| ..++.+. ++.|++||+.+++... +..+...+.+++|||||+.|+++ .|+.|.+||+.+ ++.
T Consensus 83 ~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred CceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 4699999999 5555543 5999999999887644 44566778999999999999985 679999999998 766
Q ss_pred eEEEeccCCC--------------eEEEEEcCCCCEEEEEe---------------------------------CCCeEE
Q 041916 95 LIKMLCHQGP--------------VSALAFHPNGHLMATSG---------------------------------KECKIK 127 (359)
Q Consensus 95 ~~~~~~h~~~--------------v~~i~~~~~~~~l~~~~---------------------------------~d~~i~ 127 (359)
......+... +.+++|+|||++|++++ .+..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 5443333332 48899999999999987 456899
Q ss_pred EEEcCCceeeEec-----cCCceeEEEcCCc--eEEEEcCC-----cEEEEcCCCCCCccceeecccCCCCcceEEEEEe
Q 041916 128 IWDLRKYEVLQTL-----PGHAKTLDFSQKG--LLAVGTGS-----FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR 195 (359)
Q Consensus 128 iwd~~~~~~~~~~-----~~~i~~~~~s~~g--l~~~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 195 (359)
+||+.+++..... ...+.+++|+|+| +++++.++ .|.+||+.++.................+.+++|+
T Consensus 239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 9999998765444 1357899999999 55555554 8999998766222222221111011134678999
Q ss_pred e--CCCEEEEEcCCCeEEEEE
Q 041916 196 P--YEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 196 p--~~~~l~~~~~dg~~~i~~ 214 (359)
| +|+++++++.+|...+|.
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~ 339 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYL 339 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEE
T ss_pred cCCCCEEEEEEccCCccEEEE
Confidence 9 999999998888766654
No 149
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.82 E-value=7.2e-19 Score=173.30 Aligned_cols=208 Identities=10% Similarity=0.052 Sum_probs=151.6
Q ss_pred CeEEEe-CCCc--EEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC--------------
Q 041916 1 YPYIYN-RDGT--ELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-------------- 62 (359)
Q Consensus 1 ~v~iwd-~~g~--~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-------------- 62 (359)
.|++|| .++. .+..+..|... .+++|||||++|++++ ++.|++||+.+++.......+...
T Consensus 130 ~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~ 208 (741)
T 2ecf_A 130 ELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEM 208 (741)
T ss_dssp EEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHS
T ss_pred cEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeecc
Confidence 378999 5552 45566777655 9999999999999887 569999999988776554444332
Q ss_pred --eEEEEEcCCCCEEEEEeCCC---------------------------------eEEEEeCCC-CcceEEEe--ccCCC
Q 041916 63 --TDVMRVNPFNGVVSLGHSGG---------------------------------TVTMWKPTT-AAPLIKML--CHQGP 104 (359)
Q Consensus 63 --v~~~~~sp~~~~l~sg~~dg---------------------------------~v~lwd~~~-~~~~~~~~--~h~~~ 104 (359)
+.+++|||||+.|++++.|+ .|.+||+.+ ++...... .|...
T Consensus 209 ~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 288 (741)
T 2ecf_A 209 DRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY 288 (741)
T ss_dssp CCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE
T ss_pred ccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE
Confidence 47899999999999987765 789999988 77554332 47778
Q ss_pred eEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCceeeEecc----C---CceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916 105 VSALAFHPNGHLMATSGK-----ECKIKIWDLRKYEVLQTLP----G---HAKTLDFSQKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 105 v~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~----~---~i~~~~~s~~g--l~~~~~d~~i~i~d~~~ 170 (359)
+.+++| |||++|++++. +..|.+||+.++++...+. . .+.+++|+|+| +++++.+|.+.||.+..
T Consensus 289 ~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 289 LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 999999 99999987764 5689999999987765552 1 34689999999 45555677777776443
Q ss_pred CCCccceeecccCCCCcceEEE-EEeeCCCEEEEE-cCCC--eEEEEEc
Q 041916 171 GSHNYSRYMGHSMVKGYQIGKV-SFRPYEDVLGIG-HSMG--WSSILVP 215 (359)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~v~~~-~~~p~~~~l~~~-~~dg--~~~i~~~ 215 (359)
... ...+..+.. .+.++ .|+|+++.|++. +.++ ...+|..
T Consensus 368 ~~~-~~~l~~~~~----~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 368 KGK-AAALTHGNW----SVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp SSC-EEESCCSSS----CEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred CCC-eeeeeecce----EEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 323 455555533 67777 599999877544 4444 5556553
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.81 E-value=1.8e-18 Score=176.81 Aligned_cols=202 Identities=14% Similarity=0.054 Sum_probs=159.1
Q ss_pred eEEEeCCCcEEEEeccCC------------CeEEEEEe-cCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC-CeEEEE
Q 041916 2 PYIYNRDGTELHCLKEHG------------AVLKLQFL-RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG-RTDVMR 67 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~------------~~~~l~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~ 67 (359)
|++||..+..+..+..+. .+.+++|+ |||.+|++++ ++.|.+|++.++... .+..|.. .+..++
T Consensus 267 i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~ 344 (1045)
T 1k32_A 267 IYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRG 344 (1045)
T ss_dssp EEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEEC
T ss_pred EEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeee
Confidence 677874344444665532 34899999 9999998887 789999999887754 4666777 899999
Q ss_pred EcCCCCEEEEEeCCCeEE-EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCC
Q 041916 68 VNPFNGVVSLGHSGGTVT-MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGH 143 (359)
Q Consensus 68 ~sp~~~~l~sg~~dg~v~-lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~ 143 (359)
|+ +|..|++++.++.+. +||+.++... .+..|...+.+++|+|||++|++++.++.|++||+.+++....+ .+.
T Consensus 345 ~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 345 GD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp SS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred Ec-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence 99 999999999888898 9999876543 44478889999999999999999999999999999998876655 456
Q ss_pred ceeEEEcCCc--eEEEEcC----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEE
Q 041916 144 AKTLDFSQKG--LLAVGTG----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSS 211 (359)
Q Consensus 144 i~~~~~s~~g--l~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~ 211 (359)
+.+++|||+| +++++.+ +.|++||+.++ . ...+..|.. .+.+++|+|+|++|++++.++...
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~----~~~~~~~spdG~~l~~~s~~~~~~ 496 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENS----HDYAPAFDADSKNLYYLSYRSLDP 496 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSS----BEEEEEECTTSCEEEEEESCCCCC
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCc----ccCCceEcCCCCEEEEEecccCCc
Confidence 7999999999 5555543 48999997765 3 444555543 688899999999999988876544
Q ss_pred EE
Q 041916 212 IL 213 (359)
Q Consensus 212 i~ 213 (359)
.|
T Consensus 497 ~~ 498 (1045)
T 1k32_A 497 SP 498 (1045)
T ss_dssp EE
T ss_pred Cc
Confidence 44
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=174.59 Aligned_cols=205 Identities=13% Similarity=0.067 Sum_probs=147.3
Q ss_pred CeEEEe-CCCcEEEEeccCCC----eEEEEEecCCCEEEEEec---------CCeEEEEECCCCeEE--EEEecCCCCeE
Q 041916 1 YPYIYN-RDGTELHCLKEHGA----VLKLQFLRNHFLLASINK---------FGQLRYQDVTMGEIV--GNFRTGLGRTD 64 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~----~~~l~~s~~~~~l~s~~~---------dg~i~iwd~~~~~~~--~~~~~~~~~v~ 64 (359)
+|++|| .+|+....+.+|.. +.+++|||||++|++++. ++.|++||+.+++.+ ..+ ...+.
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~ 113 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ 113 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC
T ss_pred CEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc
Confidence 488999 78888777776644 689999999999998876 789999999998763 222 25688
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE-eccCCCe-----------------EEEEEcCCCCEEEEEeCCC--
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM-LCHQGPV-----------------SALAFHPNGHLMATSGKEC-- 124 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~-~~h~~~v-----------------~~i~~~~~~~~l~~~~~d~-- 124 (359)
.++|||||+.|++++ ++.|++||+.++...... .++...| .+++|+|||++|++++.|.
T Consensus 114 ~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~ 192 (719)
T 1z68_A 114 YLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTD 192 (719)
T ss_dssp CEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTT
T ss_pred cceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCC
Confidence 999999999999885 789999999887664322 2332222 4899999999999988652
Q ss_pred --------------------------------eEEEEEcCCceee---E-----ec---cCCceeEEEcCCc-eEEEE-c
Q 041916 125 --------------------------------KIKIWDLRKYEVL---Q-----TL---PGHAKTLDFSQKG-LLAVG-T 159 (359)
Q Consensus 125 --------------------------------~i~iwd~~~~~~~---~-----~~---~~~i~~~~~s~~g-l~~~~-~ 159 (359)
.|++||+.++... . .+ ...+.+++||||+ +++.. .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~ 272 (719)
T 1z68_A 193 IPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLK 272 (719)
T ss_dssp SCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEE
T ss_pred CceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEec
Confidence 7899999987642 1 11 2357899999999 44432 2
Q ss_pred C----CcEEEEc----CCCCCCcccee----ecccCCCCcceE-----EEEEeeCCCEEEE--EcCCCeEEEEE
Q 041916 160 G----SFVQILG----DFSGSHNYSRY----MGHSMVKGYQIG-----KVSFRPYEDVLGI--GHSMGWSSILV 214 (359)
Q Consensus 160 d----~~i~i~d----~~~~~~~~~~~----~~~~~~~~~~v~-----~~~~~p~~~~l~~--~~~dg~~~i~~ 214 (359)
. ..|.+|| +.++ .....+ ..|.. .+. .++|+|+|+.|+. +..+|...++.
T Consensus 273 ~~~~~~~l~~~d~~~~~~~g-~~~~~~~~~~~~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~ 341 (719)
T 1z68_A 273 RVQNVSVLSICDFREDWQTW-DCPKTQEHIEESRTG----WAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHY 341 (719)
T ss_dssp SSTTEEEEEEEEECSSSSSE-ECCGGGEEEEECSSS----CSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEE
T ss_pred cccCeEEEEEEcccCCCCCC-ceEEEEecccccCCc----eEccccCCccEECCCCCeEEEEEEccCCceEEEE
Confidence 2 2488898 6555 333333 23432 455 7899999996544 55566555543
No 152
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=2.8e-18 Score=168.64 Aligned_cols=208 Identities=9% Similarity=0.034 Sum_probs=147.1
Q ss_pred eEEEe-CCCcEEEEecc---CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCe-------------
Q 041916 2 PYIYN-RDGTELHCLKE---HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT------------- 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~---h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v------------- 63 (359)
|++|| .+|.. ..+.. |.. +..++|||||+.||+++. +.|++||+.+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 67999 66654 44443 333 478999999999999885 799999999988766655544333
Q ss_pred -----EEEEEcCCCCEEEEEeCCC----------------------------------eEEEEeCCCCcceEEEecc---
Q 041916 64 -----DVMRVNPFNGVVSLGHSGG----------------------------------TVTMWKPTTAAPLIKMLCH--- 101 (359)
Q Consensus 64 -----~~~~~sp~~~~l~sg~~dg----------------------------------~v~lwd~~~~~~~~~~~~h--- 101 (359)
.+++|||||+.|++++.|+ .|.+||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 7899999999999887553 7999999988765666554
Q ss_pred ---CCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCceeeEec----cCCc----eeEEEcCCc--eEE--EEcCC-
Q 041916 102 ---QGPVSALAFHPNGHLMATSGK----ECKIKIWDLRKYEVLQTL----PGHA----KTLDFSQKG--LLA--VGTGS- 161 (359)
Q Consensus 102 ---~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~----~~~i----~~~~~s~~g--l~~--~~~d~- 161 (359)
...+.+++|+|||++|++.+. +..|.+||+.++++...+ .+.+ ..++|||+| ++. ...++
T Consensus 251 ~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~ 330 (723)
T 1xfd_A 251 RMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGG 330 (723)
T ss_dssp GGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSS
T ss_pred CCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCC
Confidence 567899999999998877653 357999999998765544 2233 389999999 443 33556
Q ss_pred -----cEEEEcCCCCCC--ccceeecccCCCCcceEE-EEEeeCCCEEEEEcCC---CeEEEEEc
Q 041916 162 -----FVQILGDFSGSH--NYSRYMGHSMVKGYQIGK-VSFRPYEDVLGIGHSM---GWSSILVP 215 (359)
Q Consensus 162 -----~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~-~~~~p~~~~l~~~~~d---g~~~i~~~ 215 (359)
.|.+||+..+.. ....+..... .+.. ++|+|+|+.|++.+.+ +...+|..
T Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 331 RGKFYHITVSSSQPNSSNDNIQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SSCEEEEEEECSSCCSSSCCCCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred CcceeEEEEEeccCCCCccceeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 577787333323 1333332211 3544 6999999998766554 55566654
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=1.8e-17 Score=147.11 Aligned_cols=172 Identities=10% Similarity=0.014 Sum_probs=135.7
Q ss_pred eEEEe-CCCcEEEEeccCC------CeEEEEEecCCCEEEEEe------------cCCeEEEEECCCCeEEEEEecCCCC
Q 041916 2 PYIYN-RDGTELHCLKEHG------AVLKLQFLRNHFLLASIN------------KFGQLRYQDVTMGEIVGNFRTGLGR 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~------~~~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~~~~~~~~~~~~~~ 62 (359)
|++|| .+++.+..+.... .+.+++|+|++.+|++++ .++.|.+||+.+++.+..+.. ...
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~ 136 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ 136 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC
Confidence 78999 7888887776433 458899999999888886 579999999999988887775 356
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec------------------------------------------
Q 041916 63 TDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC------------------------------------------ 100 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~------------------------------------------ 100 (359)
+.+++|+|++++|+++ ++.|.+||+.+++....+..
T Consensus 137 ~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (337)
T 1pby_B 137 ITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214 (337)
T ss_dssp CCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSG
T ss_pred cceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccc
Confidence 7889999999988877 67899999887655443321
Q ss_pred ------------------------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeEEEcCCc-
Q 041916 101 ------------------------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG- 153 (359)
Q Consensus 101 ------------------------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g- 153 (359)
+...+.+++|+|+|++++++ ++.|.+||+.+++.+..+ ...+.+++|+|+|
T Consensus 215 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 292 (337)
T 1pby_B 215 TAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS 292 (337)
T ss_dssp GGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSC
T ss_pred cccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCC
Confidence 11234569999999999888 689999999999887776 4568999999999
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccceee
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSRYM 179 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~~~ 179 (359)
+++++.++.|.+||+.++ ..+..+.
T Consensus 293 ~l~~~~~~~~i~v~d~~~~-~~~~~~~ 318 (337)
T 1pby_B 293 TVWLGGALGDLAAYDAETL-EKKGQVD 318 (337)
T ss_dssp EEEEESBSSEEEEEETTTC-CEEEEEE
T ss_pred EEEEEcCCCcEEEEECcCC-cEEEEEE
Confidence 666677899999998766 4444443
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.78 E-value=2.6e-17 Score=168.20 Aligned_cols=207 Identities=9% Similarity=0.023 Sum_probs=158.1
Q ss_pred eE-EEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PY-IYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~-iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
|+ +|+..+.....+..|... .+++|+|||++|++++.++.|++||+.+++....+..|.+.+.+++|+|||++|++++
T Consensus 360 l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 360 FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp EEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred eEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEe
Confidence 45 778434444455566554 9999999999999999999999999999998888878989999999999999998887
Q ss_pred CCC----------eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-------------
Q 041916 80 SGG----------TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV------------- 136 (359)
Q Consensus 80 ~dg----------~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~------------- 136 (359)
.++ .|++||+.+++ +..+..|...+.+++|+|||++|++++.++...+|+......
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 518 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred cCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEe
Confidence 654 89999999876 667778888899999999999999999887777776433211
Q ss_pred ------------------------------eEec---cCCceeEEEcCCc-eEEE------------E--cCCcEEEEcC
Q 041916 137 ------------------------------LQTL---PGHAKTLDFSQKG-LLAV------------G--TGSFVQILGD 168 (359)
Q Consensus 137 ------------------------------~~~~---~~~i~~~~~s~~g-l~~~------------~--~d~~i~i~d~ 168 (359)
+..+ .+.+..++++|+| +++. + ....|.+||+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~ 598 (1045)
T 1k32_A 519 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 598 (1045)
T ss_dssp STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred CCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEEC
Confidence 1111 1346789999999 4442 1 2357888987
Q ss_pred CCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 169 FSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
.++. ...+. . .+.+++|+|||+.|++++.+ .+.+|....+.
T Consensus 599 ~~~~--~~~l~-~------~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 599 KTRK--VTEVK-N------NLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp TTCC--EEEEE-E------EEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CCCc--EEEee-c------CcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 6652 23333 2 68899999999999999877 56677665544
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=4.1e-17 Score=147.27 Aligned_cols=209 Identities=11% Similarity=0.050 Sum_probs=141.7
Q ss_pred eEEEe-C-CCcEEEEec--cCCCeEEEEEecCCCE--EEEEe-------------cCCeEEEEECC-CCeEEEEEe----
Q 041916 2 PYIYN-R-DGTELHCLK--EHGAVLKLQFLRNHFL--LASIN-------------KFGQLRYQDVT-MGEIVGNFR---- 57 (359)
Q Consensus 2 v~iwd-~-~g~~~~~l~--~h~~~~~l~~s~~~~~--l~s~~-------------~dg~i~iwd~~-~~~~~~~~~---- 57 (359)
|.+|+ . +|....... .+..+.+++|+|+|++ +++++ .+|.+.+|++. +|+....+.
T Consensus 62 v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~ 141 (365)
T 1jof_A 62 WSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEY 141 (365)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEEC
T ss_pred EEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEe
Confidence 78899 4 777654333 2233567899999984 55553 68999999997 466554443
Q ss_pred cCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCcce--EEEe--ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEE
Q 041916 58 TGLGRTDVMRVNPFNGVVSLGH-SGGTVTMWKPT-TAAPL--IKML--CHQGPVSALAFHPNGHLMATSGK-ECKIKIWD 130 (359)
Q Consensus 58 ~~~~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~-~~~~~--~~~~--~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd 130 (359)
.+...+.+++|+|+|++|++++ .++.|.+||+. +++.. ..+. .|...+..++|+|||+++++++. ++.|.+|+
T Consensus 142 ~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 142 QENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence 2456799999999999888765 46799999998 66542 2333 23556899999999999988775 68999998
Q ss_pred cC--Cceee------Eecc----C---------CceeEE-EcCCc--eEEEEcC-C-----cEEEEcCCCCCCccce---
Q 041916 131 LR--KYEVL------QTLP----G---------HAKTLD-FSQKG--LLAVGTG-S-----FVQILGDFSGSHNYSR--- 177 (359)
Q Consensus 131 ~~--~~~~~------~~~~----~---------~i~~~~-~s~~g--l~~~~~d-~-----~i~i~d~~~~~~~~~~--- 177 (359)
+. +++.. ..++ + .+..++ |+|+| +++++.+ + .|.+|++.........
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~ 301 (365)
T 1jof_A 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL 301 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE
T ss_pred EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee
Confidence 75 45432 2222 1 367899 99999 4444432 3 8999997532232221
Q ss_pred eecccCCCCcceEEEEEee---CCCEEEEEcCC-CeEEEEE
Q 041916 178 YMGHSMVKGYQIGKVSFRP---YEDVLGIGHSM-GWSSILV 214 (359)
Q Consensus 178 ~~~~~~~~~~~v~~~~~~p---~~~~l~~~~~d-g~~~i~~ 214 (359)
...+. ..+..++|+| +|++|++++.+ +.+.+|.
T Consensus 302 ~~~~~----~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 302 SPTPT----SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EECSS----CCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred eecCC----CCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 21222 2467789999 89988887654 5555543
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=4.3e-17 Score=156.28 Aligned_cols=184 Identities=11% Similarity=0.009 Sum_probs=140.3
Q ss_pred CCcEEEEeccCCCeEEEEEecCCC--EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----
Q 041916 8 DGTELHCLKEHGAVLKLQFLRNHF--LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG---- 81 (359)
Q Consensus 8 ~g~~~~~l~~h~~~~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d---- 81 (359)
+|... .+..+......+|+|++. .+++++.+ .+.+||+.+++.......+. .+++|||||+.|++++.+
T Consensus 100 ~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCCCCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCC
Confidence 55544 555555556778999874 34444444 55599999987665554433 789999999999988877
Q ss_pred CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--eEEEEEcCCceeeEecc---CCceeEE--------
Q 041916 82 GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--KIKIWDLRKYEVLQTLP---GHAKTLD-------- 148 (359)
Q Consensus 82 g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~---~~i~~~~-------- 148 (359)
+.|++||+.+++.. .+..|.+.+.+++|+|||++|+++..++ .|++||+.++++. .+. ..+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 252 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLG 252 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcccccee
Confidence 78999999888754 6778888999999999999999888888 8999999998776 442 3455566
Q ss_pred EcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 149 FSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 149 ~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
|+|+| +++++.++.+++|++ + .... .. ...+.+++|+ +++++++++.+..
T Consensus 253 ~spdg~~~~~~~~~g~~~l~~~--g-~~~~---~~----~~~v~~~~~s-dg~~l~~~s~~~~ 304 (582)
T 3o4h_A 253 YLPDGRLAVVARREGRSAVFID--G-ERVE---AP----QGNHGRVVLW-RGKLVTSHTSLST 304 (582)
T ss_dssp ECTTSCEEEEEEETTEEEEEET--T-EEEC---CC----SSEEEEEEEE-TTEEEEEEEETTE
T ss_pred EcCCCcEEEEEEcCCcEEEEEE--C-Ceec---cC----CCceEEEEec-CCEEEEEEcCCCC
Confidence 99999 566778999999997 3 3222 12 2378999999 9999988887765
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=4.9e-16 Score=139.76 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=134.2
Q ss_pred eEEEe--CC-CcE--EEEeccCC-CeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEE----E--ec--------CC
Q 041916 2 PYIYN--RD-GTE--LHCLKEHG-AVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGN----F--RT--------GL 60 (359)
Q Consensus 2 v~iwd--~~-g~~--~~~l~~h~-~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~----~--~~--------~~ 60 (359)
|.+|+ .. |.. +..+..+. .+..+++ ++.+|++++ .++.|.+|++.....+.. + .+ +.
T Consensus 77 v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~ 154 (361)
T 3scy_A 77 VSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM 154 (361)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred EEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence 56676 22 543 33343333 3477777 787777666 588999999975432211 1 11 12
Q ss_pred CCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcc------e------EEE-eccCCCeEEEEEcCCCCEEEEEe-CCCe
Q 041916 61 GRTDVMRVNPFNGVVSLGH-SGGTVTMWKPTTAAP------L------IKM-LCHQGPVSALAFHPNGHLMATSG-KECK 125 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~~~~~------~------~~~-~~h~~~v~~i~~~~~~~~l~~~~-~d~~ 125 (359)
..+++++|+|+|++|++++ .++.|.+|++..... + ..+ ..+...+..++|+|+|+++++++ .++.
T Consensus 155 ~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 234 (361)
T 3scy_A 155 PHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT 234 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE
T ss_pred CcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe
Confidence 2358899999998665554 588999998875432 1 111 23345578999999999888877 6899
Q ss_pred EEEEEcCCcee--eEec---c---CCceeEEEcCCc--eEEEEc--CCcEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916 126 IKIWDLRKYEV--LQTL---P---GHAKTLDFSQKG--LLAVGT--GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS 193 (359)
Q Consensus 126 i~iwd~~~~~~--~~~~---~---~~i~~~~~s~~g--l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 193 (359)
|.+||+.++.. +..+ . ..+..++|+|+| +++++. ++.|.+|++.............. .+..+.+++
T Consensus 235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g~~~~~~~ 312 (361)
T 3scy_A 235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TGIHPRNFI 312 (361)
T ss_dssp EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CSSCCCEEE
T ss_pred EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CCCCCceEE
Confidence 99999987654 3333 1 235699999999 545554 47999999752211221111111 123678999
Q ss_pred EeeCCCEEEEEc-CCCeEEEEE
Q 041916 194 FRPYEDVLGIGH-SMGWSSILV 214 (359)
Q Consensus 194 ~~p~~~~l~~~~-~dg~~~i~~ 214 (359)
|+|+|++|++++ .++.+.+|.
T Consensus 313 ~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 313 ITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp ECTTSCEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEECCCCCEEEEE
Confidence 999999888776 455555553
No 158
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.77 E-value=4.6e-16 Score=139.94 Aligned_cols=210 Identities=13% Similarity=0.185 Sum_probs=137.2
Q ss_pred eEEEe---CCCcEE--EEeccCCCeEEEEEecCCCEEEEEecC----CeEEEEECCC--Ce--EEEEEecCCCCeEEEEE
Q 041916 2 PYIYN---RDGTEL--HCLKEHGAVLKLQFLRNHFLLASINKF----GQLRYQDVTM--GE--IVGNFRTGLGRTDVMRV 68 (359)
Q Consensus 2 v~iwd---~~g~~~--~~l~~h~~~~~l~~s~~~~~l~s~~~d----g~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~ 68 (359)
|++|. .+|... ..+ ....+..++|+|++++|++++.+ +.|.+|++.. |. .+..+..+...+..+++
T Consensus 29 i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~ 107 (361)
T 3scy_A 29 IYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT 107 (361)
T ss_dssp EEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE
T ss_pred EEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE
Confidence 45554 456543 333 23334889999999999998875 7999998865 44 33444445556777888
Q ss_pred cCCCCEEEEEe-CCCeEEEEeCCCCcceEE---Eecc-----------CCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC
Q 041916 69 NPFNGVVSLGH-SGGTVTMWKPTTAAPLIK---MLCH-----------QGPVSALAFHPNGHLMATSG-KECKIKIWDLR 132 (359)
Q Consensus 69 sp~~~~l~sg~-~dg~v~lwd~~~~~~~~~---~~~h-----------~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~ 132 (359)
++.+|++++ .++.|.+|++.....+.. ...+ ...+.+++|+|+|++|++++ .++.|.+|++.
T Consensus 108 --dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~ 185 (361)
T 3scy_A 108 --NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNIN 185 (361)
T ss_dssp --CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred --CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEc
Confidence 777766665 688999999975432211 1111 22358899999999776665 47899999987
Q ss_pred Cce-------e-------eEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCC-ccceeecccCCCCcceEEE
Q 041916 133 KYE-------V-------LQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKV 192 (359)
Q Consensus 133 ~~~-------~-------~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~ 192 (359)
... . .... ...+..++|+|+| +++++ .++.|.+|++.++.. ....+..... ......++
T Consensus 186 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~-~~~~~~~i 264 (361)
T 3scy_A 186 PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTV-NAQGSGDI 264 (361)
T ss_dssp TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSS-CCCCEEEE
T ss_pred CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCC-CCCCcccE
Confidence 533 1 1122 2356899999999 55555 578999999764411 1122222211 22346899
Q ss_pred EEeeCCCEEEEEcCC--CeEEEEEc
Q 041916 193 SFRPYEDVLGIGHSM--GWSSILVP 215 (359)
Q Consensus 193 ~~~p~~~~l~~~~~d--g~~~i~~~ 215 (359)
+|+|+|++|+++..+ +.+.+|..
T Consensus 265 ~~spdg~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 265 HLSPDGKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp EECTTSSEEEEEECSSSCEEEEEEE
T ss_pred EECCCCCEEEEECCCCCCEEEEEEE
Confidence 999999988665554 55666554
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.76 E-value=8.6e-17 Score=143.46 Aligned_cols=148 Identities=13% Similarity=0.107 Sum_probs=117.3
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCcceEEEe
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVV-SLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l-~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
+++++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.+ +++..++.|.+||+.+++.+..+.
T Consensus 3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 456788889999999999999999999999888887553 257899999999865 455678999999999988777665
Q ss_pred ccC------CCeEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCcee---eEec--cCCceeEEEcCCc-eE
Q 041916 100 CHQ------GPVSALAFHPNGHLMATSGKE------------CKIKIWDLRKYEV---LQTL--PGHAKTLDFSQKG-LL 155 (359)
Q Consensus 100 ~h~------~~v~~i~~~~~~~~l~~~~~d------------~~i~iwd~~~~~~---~~~~--~~~i~~~~~s~~g-l~ 155 (359)
.+. ..+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+ +..+.+++|+|+| ++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~ 162 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 162 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCcEE
Confidence 332 237889999999999998865 8999999988543 2333 4468899999999 66
Q ss_pred EEEcCCcEEEEcCCCC
Q 041916 156 AVGTGSFVQILGDFSG 171 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~ 171 (359)
++ ++.|.+||+.++
T Consensus 163 ~~--~~~i~~~d~~~~ 176 (349)
T 1jmx_B 163 VA--GPDIYKMDVKTG 176 (349)
T ss_dssp EE--SSSEEEECTTTC
T ss_pred Ec--cCcEEEEeCCCC
Confidence 64 445999997665
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.76 E-value=1.9e-16 Score=143.59 Aligned_cols=198 Identities=12% Similarity=0.008 Sum_probs=146.3
Q ss_pred Ee-CCCcEEEEeccCCCe-EE-----EEEecCCCEEEEEec-CC--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 041916 5 YN-RDGTELHCLKEHGAV-LK-----LQFLRNHFLLASINK-FG--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 5 wd-~~g~~~~~l~~h~~~-~~-----l~~s~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 74 (359)
+| .+|..+..+..|... .. .+|+|||++|++++. ++ .|.+||+.+++.......+...+..++|+|+|+.
T Consensus 15 ~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 15 QDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred ecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 34 788899999988764 55 889999999988887 66 4899999999877766666666667889999999
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE--EcCCCCEEEEE----------------------eCCCeEEEEE
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA--FHPNGHLMATS----------------------GKECKIKIWD 130 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~--~~~~~~~l~~~----------------------~~d~~i~iwd 130 (359)
|+.++.++.|.+||+.+++....+..+.+.+.... ++|++.+++.. +.+..|.+||
T Consensus 95 l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 95 LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 99999999999999999887666666665554444 48999998743 2446899999
Q ss_pred cCCceeeEec--cCCceeEEEcC-Cc--eEEEEcC------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916 131 LRKYEVLQTL--PGHAKTLDFSQ-KG--LLAVGTG------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 131 ~~~~~~~~~~--~~~i~~~~~s~-~g--l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
+.+++..... ...+..++|+| +| ++.++.+ ..|.++|...+ ....+..+. .+..+..++|+|+|+
T Consensus 175 ~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~--~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 175 LKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHA--EGESCTHEFWVPDGS 250 (388)
T ss_dssp TTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCC--TTEEEEEEEECTTSS
T ss_pred CCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCC--CCcccccceECCCCC
Confidence 9988654443 45688999999 98 4444432 37888885443 233333331 122578899999999
Q ss_pred EEEEEcC
Q 041916 200 VLGIGHS 206 (359)
Q Consensus 200 ~l~~~~~ 206 (359)
.|+..+.
T Consensus 251 ~l~~~~~ 257 (388)
T 3pe7_A 251 ALVYVSY 257 (388)
T ss_dssp CEEEEEE
T ss_pred EEEEEec
Confidence 7765443
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.4e-16 Score=157.13 Aligned_cols=208 Identities=11% Similarity=0.045 Sum_probs=145.1
Q ss_pred CeEEEe-CCCcEEEEeccCCCe------EEEEEecCCCEEEEEecC---------CeEEEEECCCCeEEEEEecCCCCeE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV------LKLQFLRNHFLLASINKF---------GQLRYQDVTMGEIVGNFRTGLGRTD 64 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~------~~l~~s~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~ 64 (359)
+|++|| .+|.+...+.+|... ..++|||||++|++++.+ +.+.+||+.+++.. .+..|.+.+.
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~ 115 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQ 115 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEE
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcce
Confidence 378999 889888888887631 348999999999998875 66779999998854 4666778899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE-EeccCCCe-----------------EEEEEcCCCCEEEEEeCCC--
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK-MLCHQGPV-----------------SALAFHPNGHLMATSGKEC-- 124 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~-~~~h~~~v-----------------~~i~~~~~~~~l~~~~~d~-- 124 (359)
.++|||||+.||.++ |+.|++||+.++..... ..++...+ .++.|||||++||.++.|.
T Consensus 116 ~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~ 194 (740)
T 4a5s_A 116 WVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTE 194 (740)
T ss_dssp EEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTT
T ss_pred eeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccC
Confidence 999999999998884 68999999988765432 12332222 3589999999999875321
Q ss_pred ----------------------------------eEEEEEcCC---c---eeeEec--------cCCceeEEEcCCc-eE
Q 041916 125 ----------------------------------KIKIWDLRK---Y---EVLQTL--------PGHAKTLDFSQKG-LL 155 (359)
Q Consensus 125 ----------------------------------~i~iwd~~~---~---~~~~~~--------~~~i~~~~~s~~g-l~ 155 (359)
+|.+||+.+ + +..... ...+..++||||| ++
T Consensus 195 v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~ 274 (740)
T 4a5s_A 195 VPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERIS 274 (740)
T ss_dssp CCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEE
T ss_pred CceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEE
Confidence 588899988 7 332221 1247899999999 33
Q ss_pred E-EEc----CCcEEEEcCCCCC----C-cccee--ecccCCCCcce-----EEEEEeeCCCEEE-EEc-CCCeEEEEE
Q 041916 156 A-VGT----GSFVQILGDFSGS----H-NYSRY--MGHSMVKGYQI-----GKVSFRPYEDVLG-IGH-SMGWSSILV 214 (359)
Q Consensus 156 ~-~~~----d~~i~i~d~~~~~----~-~~~~~--~~~~~~~~~~v-----~~~~~~p~~~~l~-~~~-~dg~~~i~~ 214 (359)
+ ... +..|.+||+.++. . ....+ ..+.. .| ..++|+|||+.|+ ..+ .+|...|+.
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~----~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~ 348 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTG----WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICY 348 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSS----CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEE
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCc----eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEE
Confidence 3 322 2379999987763 1 12222 22321 33 3788999999876 554 566555543
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=163.31 Aligned_cols=175 Identities=13% Similarity=0.080 Sum_probs=130.6
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEeC---------CCeEEEEeC
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG---RTDVMRVNPFNGVVSLGHS---------GGTVTMWKP 89 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~ 89 (359)
.+++|+|+|.++++ +.|+.|++||+.+++....+..+.. .+.+++|||||++|++++. ++.|.+||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 67899999976555 4699999999999998777765543 4899999999999998876 789999999
Q ss_pred CCCcce--EEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cC--------------------Ccee
Q 041916 90 TTAAPL--IKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PG--------------------HAKT 146 (359)
Q Consensus 90 ~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~--------------------~i~~ 146 (359)
.+++.+ ..+ ...+.+++|||||+.|++++ ++.|++||+.++.+.... .+ ...+
T Consensus 98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 988652 222 35688999999999999986 789999999887765433 11 1148
Q ss_pred EEEcCCc--eEEEEcCC----------------------------------cEEEEcCCCCCCc--cc-----eeecccC
Q 041916 147 LDFSQKG--LLAVGTGS----------------------------------FVQILGDFSGSHN--YS-----RYMGHSM 183 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d~----------------------------------~i~i~d~~~~~~~--~~-----~~~~~~~ 183 (359)
++||||| +++++.|. .|.+||+.++... .. .+..|.
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~- 252 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD- 252 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC-
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc-
Confidence 9999999 55555431 7889997655211 01 122333
Q ss_pred CCCcceEEEEEeeCCCEEEEEc
Q 041916 184 VKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 184 ~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
..+.+++|+||++++++..
T Consensus 253 ---~~~~~~~~SpD~~~~~~~~ 271 (719)
T 1z68_A 253 ---YYFSWLTWVTDERVCLQWL 271 (719)
T ss_dssp ---EEEEEEEESSSSEEEEEEE
T ss_pred ---ceEEEeEEeCCCeEEEEEe
Confidence 3789999999988777643
No 163
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.74 E-value=1.2e-16 Score=153.30 Aligned_cols=180 Identities=13% Similarity=0.007 Sum_probs=127.9
Q ss_pred eEEEEEecCCCEEEEEec-CCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeC---CCeEEEEeCCC--Cc
Q 041916 21 VLKLQFLRNHFLLASINK-FGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLGHS---GGTVTMWKPTT--AA 93 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg~~---dg~v~lwd~~~--~~ 93 (359)
+.+++|+|||+.||+++. ||++.||++.+++.. .+..+. ..+..++|+|| +++++++. +....+|.+.. ..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g 101 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG 101 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT
T ss_pred hheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC
Confidence 499999999999999887 999999999766654 454454 68999999999 77777765 45556655433 22
Q ss_pred ceEEEeccCCCeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcC----CcEEEE
Q 041916 94 PLIKMLCHQGPVSALAFHPNGHL-MATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTG----SFVQIL 166 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d----~~i~i~ 166 (359)
....+..+. .+...+|+|+|+. +++++.++.+.+||+.++++......+..+++||||| +++++.+ +.|++|
T Consensus 102 ~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~i~~~ 180 (582)
T 3o4h_A 102 EEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTS 180 (582)
T ss_dssp CCEECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred ccccccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeEEEEE
Confidence 222333322 3456788888864 3333444455699999987655553334899999999 5545555 679999
Q ss_pred cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
|+.++ . ...+..|.. .+.+++|+|||+.|+++..+|.
T Consensus 181 d~~~g-~-~~~l~~~~~----~~~~~~~SpDG~~l~~~~~~~~ 217 (582)
T 3o4h_A 181 NLSSG-G-LRVFDSGEG----SFSSASISPGMKVTAGLETARE 217 (582)
T ss_dssp ETTTC-C-CEEECCSSC----EEEEEEECTTSCEEEEEECSSC
T ss_pred cCCCC-C-ceEeecCCC----ccccceECCCCCEEEEccCCCe
Confidence 97666 2 335555544 7899999999999998888883
No 164
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.73 E-value=9.6e-16 Score=138.30 Aligned_cols=185 Identities=10% Similarity=-0.011 Sum_probs=128.5
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECC-CCeEEEEEec-CCCCeEEEEEcCCCCE--EEEEe-------------CCC
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVT-MGEIVGNFRT-GLGRTDVMRVNPFNGV--VSLGH-------------SGG 82 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~-~~~~v~~~~~sp~~~~--l~sg~-------------~dg 82 (359)
.+..++|+|++++|++++.+ .|.+||+. +|+....... ..+.+.+++|+|+|+. +++++ .+|
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g 119 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG 119 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence 45899999999999998888 99999997 7876543321 1133567899999984 44553 689
Q ss_pred eEEEEeCC-CCcceEEEe----ccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcC-Cceee--Eec-----cCCceeEE
Q 041916 83 TVTMWKPT-TAAPLIKML----CHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLR-KYEVL--QTL-----PGHAKTLD 148 (359)
Q Consensus 83 ~v~lwd~~-~~~~~~~~~----~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~-~~~~~--~~~-----~~~i~~~~ 148 (359)
.+.+|++. .+.....+. .+...+.+++|+|||++|++++. ++.|.+||+. +++.. ..+ ...+..++
T Consensus 120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 99999997 455443333 24567899999999999887764 6799999998 66542 233 13478999
Q ss_pred EcCCc--eEEEEc-CCcEEEEcCC--CCCCcc---ceeecccCC-C--Cc------ceEEEE-EeeCCCEEEEEcC
Q 041916 149 FSQKG--LLAVGT-GSFVQILGDF--SGSHNY---SRYMGHSMV-K--GY------QIGKVS-FRPYEDVLGIGHS 206 (359)
Q Consensus 149 ~s~~g--l~~~~~-d~~i~i~d~~--~~~~~~---~~~~~~~~~-~--~~------~v~~~~-~~p~~~~l~~~~~ 206 (359)
|+|+| +++++. ++.|.+|++. ++ ... ..+...... . .. .+..++ |+|+|++|+++..
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 99999 555554 6899999754 33 221 111111100 0 11 478999 9999998877654
No 165
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.4e-15 Score=135.15 Aligned_cols=209 Identities=10% Similarity=0.012 Sum_probs=151.0
Q ss_pred eEEEe-CCCcEEEEecc-C-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEE---------ecCCCCeEEEEE
Q 041916 2 PYIYN-RDGTELHCLKE-H-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNF---------RTGLGRTDVMRV 68 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~-h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~---------~~~~~~v~~~~~ 68 (359)
|++|| .+|..+..+.. + ..+..++++|+|+++++...++.|++||..... .+..+ ..+...+..+++
T Consensus 71 i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~ 150 (329)
T 3fvz_A 71 ILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAV 150 (329)
T ss_dssp EEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEE
T ss_pred EEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEE
Confidence 78999 67888776653 3 245999999999988888889999999986432 45555 234456899999
Q ss_pred cC-CCCEEEEEe-CCCeEEEEeCCCCcceEEEecc----------CCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcCCce
Q 041916 69 NP-FNGVVSLGH-SGGTVTMWKPTTAAPLIKMLCH----------QGPVSALAFHPN-GHLMATSGKECKIKIWDLRKYE 135 (359)
Q Consensus 69 sp-~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~~h----------~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~ 135 (359)
+| ++.++++.+ .++.|.+|| .++..+..+... -.....|+++|+ +.++++...++.|++||..+++
T Consensus 151 ~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 151 EPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp CTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred eCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 99 788888886 699999999 456666665422 233789999998 7777777788999999999888
Q ss_pred eeEecc-----CCceeEEEcCCc-eEEEE--------cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 136 VLQTLP-----GHAKTLDFSQKG-LLAVG--------TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 136 ~~~~~~-----~~i~~~~~s~~g-l~~~~--------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
.+..+. ..+.+++++| + ++... .+..|.+||..++ ..+..+..... ....+.+++++|+|.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~~~~~~~~~-~~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 230 FVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG-EIIDVFKPVRK-HFDMPHDIVASEDGTVY 306 (329)
T ss_dssp EEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC-CEEEEECCSSS-CCSSEEEEEECTTSEEE
T ss_pred EEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC-eEEEEEcCCCC-ccCCeeEEEECCCCCEE
Confidence 887772 3578899999 6 33322 2348999997766 44444421111 23368999999999666
Q ss_pred EEEcCCCeEEEEE
Q 041916 202 GIGHSMGWSSILV 214 (359)
Q Consensus 202 ~~~~~dg~~~i~~ 214 (359)
++...++.+.+|.
T Consensus 307 vad~~~~~I~~~~ 319 (329)
T 3fvz_A 307 IGDAHTNTVWKFT 319 (329)
T ss_dssp EEESSSCCEEEEE
T ss_pred EEECCCCEEEEEe
Confidence 6655555555544
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.9e-14 Score=124.97 Aligned_cols=204 Identities=12% Similarity=0.124 Sum_probs=146.6
Q ss_pred eEEEeCCCcEEEEecc------CC-CeEEEEEe-cCCCEEEEEec-CCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCC
Q 041916 2 PYIYNRDGTELHCLKE------HG-AVLKLQFL-RNHFLLASINK-FGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPF 71 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~------h~-~~~~l~~s-~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~ 71 (359)
|++||.+|..+..+.. +. .+.+++++ +++.++++... ++.|.+|| .+++.+..+.. +...+.+++++|+
T Consensus 53 i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~ 131 (286)
T 1q7f_A 53 IQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNK 131 (286)
T ss_dssp EEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTT
T ss_pred EEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCC
Confidence 6789966887777643 22 35899995 67777666643 78999999 56777777653 3457899999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--c---CCc
Q 041916 72 NGVVSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--P---GHA 144 (359)
Q Consensus 72 ~~~l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~---~~i 144 (359)
|.++++...++.|.+||.. +..+..+. .+...+.+|+++|+|+++++.+.++.|.+||.. +..+..+ . ..+
T Consensus 132 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p 209 (286)
T 1q7f_A 132 GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYP 209 (286)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSE
T ss_pred CCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCC
Confidence 9988888888999999964 55555554 344568999999999988877788999999974 4555555 2 357
Q ss_pred eeEEEcCCc-eEEEE-cCC-cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 145 KTLDFSQKG-LLAVG-TGS-FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 145 ~~~~~s~~g-l~~~~-~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
..++++|+| +++++ .++ .|.+||. .+ ..+..+..+. ....+.+++++|+|.++++ +.++.+.+|
T Consensus 210 ~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g-~~~~~~~~~~--~~~~~~~i~~~~~g~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 210 IGVGINSNGEILIADNHNNFNLTIFTQ-DG-QLISALESKV--KHAQCFDVALMDDGSVVLA-SKDYRLYIY 276 (286)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECT-TS-CEEEEEEESS--CCSCEEEEEEETTTEEEEE-ETTTEEEEE
T ss_pred cEEEECCCCCEEEEeCCCCEEEEEECC-CC-CEEEEEcccC--CCCcceeEEECCCCcEEEE-CCCCeEEEE
Confidence 899999999 65555 454 9999994 33 4445554442 2224789999999965554 345544444
No 167
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=4.9e-16 Score=153.19 Aligned_cols=180 Identities=11% Similarity=0.051 Sum_probs=130.9
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-----eEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-----TDVMRVNPFNGVVSLGHSG---------GTVTMW 87 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~sg~~d---------g~v~lw 87 (359)
.++.|+||+.+|+++ |+.|++||+.++++...+.+|... ...++|||||++|++++.+ +.+.+|
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 789999999999886 899999999999988778777543 2348899999999998876 567799
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-cC--------------------Ccee
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-PG--------------------HAKT 146 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~--------------------~i~~ 146 (359)
|+.+++.. .+..|.+.+..++|||||+.||.+. |+.|++||+.++...+.. .+ ....
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99988754 3567788899999999999999885 689999999887754422 11 1135
Q ss_pred EEEcCCc--eEEEEcC-C-----------------------------------cEEEEcCCC---CCC-ccceeeccc--
Q 041916 147 LDFSQKG--LLAVGTG-S-----------------------------------FVQILGDFS---GSH-NYSRYMGHS-- 182 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d-~-----------------------------------~i~i~d~~~---~~~-~~~~~~~~~-- 182 (359)
+.||||| ++.++.| + .|.+||+.+ +.. ....+....
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 8999999 4444322 1 477888766 421 111221100
Q ss_pred CCCCcceEEEEEeeCCCEEEEEc
Q 041916 183 MVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 183 ~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
..+...+..++|+|||+.++...
T Consensus 256 ~~~~~~~~~~~wspdg~~~~~~~ 278 (740)
T 4a5s_A 256 LIGDHYLCDVTWATQERISLQWL 278 (740)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCeEEEEEEEeCCCeEEEEEe
Confidence 00233789999999999766543
No 168
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.70 E-value=7.3e-15 Score=127.16 Aligned_cols=199 Identities=11% Similarity=0.016 Sum_probs=155.7
Q ss_pred CeEEEe-CCCcEEEEeccCC--CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEE
Q 041916 1 YPYIYN-RDGTELHCLKEHG--AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVS 76 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~--~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~ 76 (359)
.|++|| .+|+.+..+..+. .+.++.++|+|++|++ .++.|..||. +|+.+..+..+. ..+.++.+.|+|++++
T Consensus 16 ~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv 92 (276)
T 3no2_A 16 KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALV 92 (276)
T ss_dssp EEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEE
T ss_pred EEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEE
Confidence 378999 5999999999876 4599999999998883 4678999999 899999998753 4788999999999999
Q ss_pred EEeC-CCeEEEEeCCCCcceEEEec------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--cCCceeE
Q 041916 77 LGHS-GGTVTMWKPTTAAPLIKMLC------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--PGHAKTL 147 (359)
Q Consensus 77 sg~~-dg~v~lwd~~~~~~~~~~~~------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~~~i~~~ 147 (359)
+.+. ++.|..+|. +++.+..+.. +......+++.++|+++++.+.++.|..||.. ++.+..+ ...+.++
T Consensus 93 ~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~ 170 (276)
T 3no2_A 93 AWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSS 170 (276)
T ss_dssp EEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEE
T ss_pred EecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccce
Confidence 9887 888888886 6777666542 22245567889999999999999999999998 9988888 3467788
Q ss_pred EEcCCc-eEE-EEcCCcEEEEcCCCCCCccceeecccC--CCCcceEEEEEeeCCCEEEEEc
Q 041916 148 DFSQKG-LLA-VGTGSFVQILGDFSGSHNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 148 ~~s~~g-l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.+.++| +++ ++.++.|..+|..++ +.+..+..... .....+..++..++|.++++..
T Consensus 171 ~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 171 AFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp EECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred eEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 889998 544 445568999997766 55555543321 0122478889999999888864
No 169
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.70 E-value=5.5e-15 Score=133.09 Aligned_cols=204 Identities=9% Similarity=0.053 Sum_probs=137.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC------CCCe
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG------LGRT 63 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~------~~~v 63 (359)
+|++|| .+++.+..+..+..+ .++|+||+++|++++ .++.|.+||+.+++.+..+... ....
T Consensus 32 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p 110 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYD 110 (361)
T ss_dssp EEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCG
T ss_pred eEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCc
Confidence 378999 889999888887777 999999999998886 3678999999999988888643 2456
Q ss_pred EEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCC---------------------------
Q 041916 64 DVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPN--------------------------- 113 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~--------------------------- 113 (359)
..++++|+|++|+++.. +++|.+||+.+++.+.. +.. .+ ...+.+.|+
T Consensus 111 ~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~ 188 (361)
T 2oiz_A 111 GLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS 188 (361)
T ss_dssp GGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE
T ss_pred ceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee
Confidence 78999999999998864 68999999998877666 331 11 111222222
Q ss_pred ----------------------CCEEEEEeCCCeEEEEEcCCce--eeEec-------------cCCceeEEEcCCc--e
Q 041916 114 ----------------------GHLMATSGKECKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSQKG--L 154 (359)
Q Consensus 114 ----------------------~~~l~~~~~d~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~s~~g--l 154 (359)
+..++..+.++.|.++|+.... .+..+ +.....++|+|++ +
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~l 268 (361)
T 2oiz_A 189 QSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRM 268 (361)
T ss_dssp EEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEE
T ss_pred eccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeE
Confidence 2222333334455555554322 11111 0112237899997 4
Q ss_pred EEEEc-----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 155 LAVGT-----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 155 ~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+++.. .+.|.+||+.+. +.+..+..+ . +.+++|+|+|++|++++. +.+.+|..
T Consensus 269 yv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~-----~-p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 269 YVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGR-----D-ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp EEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECT-----T-CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred EEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecC-----C-eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 44432 348999998776 455555443 2 899999999998877664 55555543
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.3e-15 Score=148.06 Aligned_cols=205 Identities=10% Similarity=0.003 Sum_probs=139.6
Q ss_pred eEEEeCC--C-cEEEEecc-----CCCe-EEEEEecCCCEEEEEecC----------CeEEEEECCC------CeEEEEE
Q 041916 2 PYIYNRD--G-TELHCLKE-----HGAV-LKLQFLRNHFLLASINKF----------GQLRYQDVTM------GEIVGNF 56 (359)
Q Consensus 2 v~iwd~~--g-~~~~~l~~-----h~~~-~~l~~s~~~~~l~s~~~d----------g~i~iwd~~~------~~~~~~~ 56 (359)
|++|+.. | .....+.. |... .+++|+|||+.|++++.+ ..|++||+.+ +.. ..+
T Consensus 104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l 182 (662)
T 3azo_A 104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL 182 (662)
T ss_dssp EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES
T ss_pred EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE
Confidence 5666644 3 44556666 4554 899999999999988876 5899999987 554 455
Q ss_pred e-cCCCCeEEEEEcCCCCEEEEEeCC--------CeEEEEeCC-CC---cceEEEeccCCCeEEEEEcCCCCEEEEEeCC
Q 041916 57 R-TGLGRTDVMRVNPFNGVVSLGHSG--------GTVTMWKPT-TA---APLIKMLCHQGPVSALAFHPNGHLMATSGKE 123 (359)
Q Consensus 57 ~-~~~~~v~~~~~sp~~~~l~sg~~d--------g~v~lwd~~-~~---~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d 123 (359)
. .+...+..++|||||+.|+.++.+ ..|.+||+. ++ ........|...+.+++|+|||+++++++.+
T Consensus 183 ~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~ 262 (662)
T 3azo_A 183 SDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRT 262 (662)
T ss_dssp SCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTT
T ss_pred EecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCC
Confidence 5 556778889999999999887755 379999998 56 3333344567889999999999988888888
Q ss_pred C--eEEEEEcCCceeeEeccC--C---------ceeEEEcCCc--eEEEEcCCcEEEE--cCCCCCCccceeecccCCCC
Q 041916 124 C--KIKIWDLRKYEVLQTLPG--H---------AKTLDFSQKG--LLAVGTGSFVQIL--GDFSGSHNYSRYMGHSMVKG 186 (359)
Q Consensus 124 ~--~i~iwd~~~~~~~~~~~~--~---------i~~~~~s~~g--l~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~ 186 (359)
+ .|.+||+.+++....... . +.+++|+|++ +++++. +.+.|| |+..+ ....+..+..
T Consensus 263 ~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~~~~--- 336 (662)
T 3azo_A 263 GWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAGPWT--- 336 (662)
T ss_dssp SSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCSSCC---
T ss_pred CCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecCCCC---
Confidence 8 677777766665433321 1 4678999988 444555 888888 54333 3444544432
Q ss_pred cceEEEEEeeCCCE--EEEEcCCCeEEEEEc
Q 041916 187 YQIGKVSFRPYEDV--LGIGHSMGWSSILVP 215 (359)
Q Consensus 187 ~~v~~~~~~p~~~~--l~~~~~dg~~~i~~~ 215 (359)
.+..+ |++++.. +++++.+....+|..
T Consensus 337 -~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 337 -EWAAT-LTVSGTRAVGVAASPRTAYEVVEL 365 (662)
T ss_dssp -EEEEE-EEEETTEEEEEEEETTEEEEEEEE
T ss_pred -eEEEE-EecCCCEEEEEEcCCCCCCEEEEE
Confidence 56665 1455543 334444544455543
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.69 E-value=2e-14 Score=125.60 Aligned_cols=197 Identities=19% Similarity=0.202 Sum_probs=141.7
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~ 76 (359)
|++||..+. ...+..+... .+++|+|+|.++++...++.|.+||..+++........ ...+..++++|+|.+++
T Consensus 52 i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v 130 (296)
T 3e5z_A 52 TWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWF 130 (296)
T ss_dssp EEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEE
T ss_pred EEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEE
Confidence 678884444 5666666554 99999999998887777789999999888765433221 23467899999999888
Q ss_pred EE----e-------------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcC-Ccee--
Q 041916 77 LG----H-------------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLR-KYEV-- 136 (359)
Q Consensus 77 sg----~-------------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~-~~~~-- 136 (359)
+. + ..+.|..++.. +. +..+..+......++|+|+|+.+++.+.++.|.+||+. ++..
T Consensus 131 td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~ 208 (296)
T 3e5z_A 131 SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEY 208 (296)
T ss_dssp EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEE
T ss_pred ECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcC
Confidence 73 2 13466667665 43 44455566678999999999999777778999999997 4443
Q ss_pred -eEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEE-eeCCCEEEEEcCCCe
Q 041916 137 -LQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSF-RPYEDVLGIGHSMGW 209 (359)
Q Consensus 137 -~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~~~~~dg~ 209 (359)
...+ .+.+.+++++++| +++++ ++.|.+||.. + .....+..+ .. +++++| .|+++.|.+++.++.
T Consensus 209 ~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g-~~~~~~~~~----~~-~~~~~f~~~d~~~L~v~t~~~l 279 (296)
T 3e5z_A 209 QGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G-DELGRVLTP----QT-TSNLCFGGPEGRTLYMTVSTEF 279 (296)
T ss_dssp EEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S-CEEEEEECS----SC-CCEEEEESTTSCEEEEEETTEE
T ss_pred CCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C-CEEEEEECC----CC-ceeEEEECCCCCEEEEEcCCeE
Confidence 2222 3456889999999 66666 8899999964 3 444445443 22 888999 588888888777653
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=8.1e-15 Score=130.86 Aligned_cols=191 Identities=9% Similarity=0.032 Sum_probs=130.7
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecC---C--eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKF---G--QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 75 (359)
|++|| .+|.. ..+ ..+..++|||||++|+.++.+ + .|.+||+.+++.......+ . +..++|+|+|+.|
T Consensus 45 l~~~d~~~~~~-~~l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l 118 (347)
T 2gop_A 45 IVIENLKNNAR-RFI---ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKL 118 (347)
T ss_dssp EEEEETTTCCE-EEE---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEE
T ss_pred EEEEeCCCCce-EEc---ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEE
Confidence 67888 55544 344 345889999999999887654 2 4888899888766555444 3 9999999999988
Q ss_pred EEEeCC---------------------------CeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC----
Q 041916 76 SLGHSG---------------------------GTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC---- 124 (359)
Q Consensus 76 ~sg~~d---------------------------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~---- 124 (359)
+.++.+ ..|.+||+.+++.+..+.. . .+..++|+||| ++++++.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~ 195 (347)
T 2gop_A 119 LIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQ 195 (347)
T ss_dssp EEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCC
T ss_pred EEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEeccccccc
Confidence 887642 5699999988876455554 3 78899999999 777776542
Q ss_pred -----eEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcC--------CcEEEEcCCCCCCccceeecccCCCCcce
Q 041916 125 -----KIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTG--------SFVQILGDFSGSHNYSRYMGHSMVKGYQI 189 (359)
Q Consensus 125 -----~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v 189 (359)
.|.++| +++....... .....++|+| ++.++.+ ..|.+|| ++ ........+. ..+
T Consensus 196 ~~~~~~l~~~d--~~~~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~----~~~ 265 (347)
T 2gop_A 196 YFKFWDIYIWE--DGKEEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVD----RGV 265 (347)
T ss_dssp SSCCEEEEEEE--TTEEEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCC----SEE
T ss_pred ccccccEEEeC--CCceEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC-ceEeccccCC----ccc
Confidence 355555 5543322222 3333449999 5555533 4688888 33 3333333332 367
Q ss_pred EE-EEEeeCCCEEEEEcCCCeEEEE
Q 041916 190 GK-VSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 190 ~~-~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
.. +.|+ ++ ++++++.++...+|
T Consensus 266 ~~~~~~s-dg-~~~~~~~~~~~~l~ 288 (347)
T 2gop_A 266 GQAKIKD-GK-VYFTLFEEGSVNLY 288 (347)
T ss_dssp EEEEEET-TE-EEEEEEETTEEEEE
T ss_pred CCccEEc-Cc-EEEEEecCCcEEEE
Confidence 76 8999 88 88888889888887
No 173
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=8.7e-15 Score=132.65 Aligned_cols=202 Identities=8% Similarity=-0.050 Sum_probs=135.4
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEE--EcCCCCEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMR--VNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~--~sp~~~~l~s 77 (359)
|++|| .+|.......++... ..++|+|||..|++++.++.|++||+.+++....+..+...+.... ++|++.+++.
T Consensus 62 l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~ 141 (388)
T 3pe7_A 62 YYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVG 141 (388)
T ss_dssp EEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred EEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeecc
Confidence 67888 566655555555555 5789999999999999999999999999987777776666554444 4899998874
Q ss_pred E----------------------eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CeEEE
Q 041916 78 G----------------------HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKE------CKIKI 128 (359)
Q Consensus 78 g----------------------~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d------~~i~i 128 (359)
. ..++.|.+||+.+++. ..+..+...+..++|+| ||+.|+.++.+ ..|.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (388)
T 3pe7_A 142 IEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWL 220 (388)
T ss_dssp EEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEE
T ss_pred ccccCcccccccccchhhhhhccCCcceEEEEECCCCce-EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEE
Confidence 3 2446799999998864 44456677899999999 99999887753 37888
Q ss_pred EEcCCceeeEecc----CCceeEEEcCCc--eEEEEc-C-C---cEEEEcCCCCCCc-cceeecccCCCCcceEEEEEee
Q 041916 129 WDLRKYEVLQTLP----GHAKTLDFSQKG--LLAVGT-G-S---FVQILGDFSGSHN-YSRYMGHSMVKGYQIGKVSFRP 196 (359)
Q Consensus 129 wd~~~~~~~~~~~----~~i~~~~~s~~g--l~~~~~-d-~---~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~p 196 (359)
+|+..+....... ..+..++|||+| ++.++. + + .|++||+.++... +..+..+.. .......++|+|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~-~~~~~~~~~~sp 299 (388)
T 3pe7_A 221 INEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSH-LMSNYDGSLMVG 299 (388)
T ss_dssp EETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEE-EEECTTSSEEEE
T ss_pred EeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCcee-eeecCCCCeEcc
Confidence 8887654433222 146788999999 444332 2 2 3999998776321 111111100 000122237999
Q ss_pred CCCEEEEEc
Q 041916 197 YEDVLGIGH 205 (359)
Q Consensus 197 ~~~~l~~~~ 205 (359)
+|+.|++..
T Consensus 300 dg~~l~~~~ 308 (388)
T 3pe7_A 300 DGSDAPVDV 308 (388)
T ss_dssp EECCC----
T ss_pred CCCcceeEe
Confidence 999887654
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.67 E-value=6.1e-14 Score=124.57 Aligned_cols=207 Identities=9% Similarity=-0.010 Sum_probs=146.2
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-----GRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~sp~~~~l 75 (359)
|.+|| .+++.+.++.....+..+++++++.++++...++.|.+||+.+++....+.... .....+++ .++.++
T Consensus 66 v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~ly 144 (328)
T 3dsm_A 66 IFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVY 144 (328)
T ss_dssp EEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEE
T ss_pred EEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEE
Confidence 78899 889999999776677999999998555554478999999999999887777543 14567777 444444
Q ss_pred EEEe-CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC----------CeEEEEEcCCceeeEecc---
Q 041916 76 SLGH-SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE----------CKIKIWDLRKYEVLQTLP--- 141 (359)
Q Consensus 76 ~sg~-~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d----------~~i~iwd~~~~~~~~~~~--- 141 (359)
++.. .++.|.+||+.+++.+..+.... ....++++|+|++++++..+ +.|.+||..+++....+.
T Consensus 145 v~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~ 223 (328)
T 3dsm_A 145 VNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL 223 (328)
T ss_dssp EEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT
T ss_pred EEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC
Confidence 4443 48899999999998877776433 34689999999977776654 789999999988776662
Q ss_pred -CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC-CCEEEEE----cCCCeEEEEE
Q 041916 142 -GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY-EDVLGIG----HSMGWSSILV 214 (359)
Q Consensus 142 -~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~~~----~~dg~~~i~~ 214 (359)
..+..++|+|++ .+-++.. .|.+||..++......+... .+.....++++|+ +.++++. ..++.+.+|.
T Consensus 224 g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~---~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEF---RDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp TCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCC---CSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred CCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecC---CCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 258999999988 3333333 99999976653211122111 1236889999995 5444444 3444444444
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.65 E-value=5.9e-15 Score=143.52 Aligned_cols=207 Identities=9% Similarity=-0.075 Sum_probs=141.5
Q ss_pred EEEe-CCCcEEEEeccCCCe-E---------EEEEe--cCCCE-EEEEec-CCeEEEEECC--C-CeEEEEEec-----C
Q 041916 3 YIYN-RDGTELHCLKEHGAV-L---------KLQFL--RNHFL-LASINK-FGQLRYQDVT--M-GEIVGNFRT-----G 59 (359)
Q Consensus 3 ~iwd-~~g~~~~~l~~h~~~-~---------~l~~s--~~~~~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~-----~ 59 (359)
.||. ..+.....+..|... . ...|+ |||+. |+.++. +..|.++++. . +. ...+.. |
T Consensus 50 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~ 128 (662)
T 3azo_A 50 TLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGG 128 (662)
T ss_dssp EEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTT
T ss_pred EEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCC
Confidence 4666 445555666666533 4 56666 99988 776654 5667777765 2 43 445555 5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCC----------CeEEEEeCCC------CcceEEEe-ccCCCeEEEEEcCCCCEEEEEeC
Q 041916 60 LGRTDVMRVNPFNGVVSLGHSG----------GTVTMWKPTT------AAPLIKML-CHQGPVSALAFHPNGHLMATSGK 122 (359)
Q Consensus 60 ~~~v~~~~~sp~~~~l~sg~~d----------g~v~lwd~~~------~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~ 122 (359)
...+.+++|+|||+.|++++.+ ..|.+||+.+ +. ...+. .+...+.+++|+|||++|+.++.
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~ 207 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAW 207 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEEC
Confidence 6678999999999999988876 5899999987 44 44555 56677888999999999998875
Q ss_pred C--------CeEEEEEcC-Cc---eeeEec---cCCceeEEEcCCc-eEE-EEcCC--cEEEEcCCCCCCccceeecccC
Q 041916 123 E--------CKIKIWDLR-KY---EVLQTL---PGHAKTLDFSQKG-LLA-VGTGS--FVQILGDFSGSHNYSRYMGHSM 183 (359)
Q Consensus 123 d--------~~i~iwd~~-~~---~~~~~~---~~~i~~~~~s~~g-l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~ 183 (359)
+ ..|.+||+. ++ ...... ...+..++|+|+| ++. +..++ .|.+||+.++ ........+..
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~ 286 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG-AATQLCRREEE 286 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC-CEEESSCCSSB
T ss_pred CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC-ceeeccccccc
Confidence 5 379999998 56 333322 3568899999999 444 44566 6777775444 22222222211
Q ss_pred CCC-----cceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 184 VKG-----YQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 184 ~~~-----~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.. ..+.+++|+|++.++++++. +...+|.
T Consensus 287 -~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 320 (662)
T 3azo_A 287 -FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGI 320 (662)
T ss_dssp -SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEE
T ss_pred -ccCccccccCceEeEeCCCEEEEEEEc-CccEEEE
Confidence 00 01567899999999988887 7766664
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=1.6e-13 Score=121.71 Aligned_cols=207 Identities=9% Similarity=-0.015 Sum_probs=143.8
Q ss_pred CcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC----Ce
Q 041916 9 GTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG----GT 83 (359)
Q Consensus 9 g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d----g~ 83 (359)
+.....+..+.. +.+++|+|++.+++++..++.|.+||..+++.......+...+.+++|+|+|.+++++..+ +.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 445556665554 4999999999988888889999999999887665554566789999999999988887766 68
Q ss_pred EEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc
Q 041916 84 VTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSGK------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG 153 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g 153 (359)
|.+||+.++.....+. .+...+.+++++|+|+++++... .+.|..||..+++..... ...+..++|+|+|
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence 9999998776543332 23456899999999988777654 356777776655433222 2357899999998
Q ss_pred --eEEEE-cCCcEEEEcCCCCCCccceee---cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 154 --LLAVG-TGSFVQILGDFSGSHNYSRYM---GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 154 --l~~~~-~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
++++. .++.|.+||+.........+. .........+..++++++|.++++...++.+.+|..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence 44444 468999999754322222110 000000125788999999987777666666666543
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.63 E-value=1.8e-13 Score=118.82 Aligned_cols=166 Identities=11% Similarity=0.126 Sum_probs=129.6
Q ss_pred eEEEeCCCcEEEEeccC--CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEH--GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h--~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s 77 (359)
|++||.+|..+..+... ..+.+++++|+|.++++...++.|.+||.. ++.+..+. .+...+.+++++|+|.++++
T Consensus 102 i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 102 IQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp EEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE
T ss_pred EEEECCCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE
Confidence 67888888887777543 235999999999988887788999999964 66666664 34456899999999998888
Q ss_pred EeCCCeEEEEeCCCCcceEEEecc--CCCeEEEEEcCCCCEEEEEeCCC-eEEEEEcCCceeeEecc-----CCceeEEE
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLCH--QGPVSALAFHPNGHLMATSGKEC-KIKIWDLRKYEVLQTLP-----GHAKTLDF 149 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~-----~~i~~~~~ 149 (359)
.+.++.|.+||.. +..+..+..+ ...+.+|+++|+|+++++...++ .|.+||.. ++.+..+. ..+.++++
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEE
T ss_pred ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEE
Confidence 8889999999974 5555555433 35789999999999888887776 99999964 55555552 13678999
Q ss_pred cCCc-eEEEEcCCcEEEEcCCC
Q 041916 150 SQKG-LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 150 s~~g-l~~~~~d~~i~i~d~~~ 170 (359)
+|+| +++++.++.|.+|+...
T Consensus 259 ~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 259 MDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp ETTTEEEEEETTTEEEEEECSC
T ss_pred CCCCcEEEECCCCeEEEEEccc
Confidence 9999 66667889999999644
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=1.4e-14 Score=131.41 Aligned_cols=196 Identities=8% Similarity=-0.056 Sum_probs=132.3
Q ss_pred eEEEeCCCcEEEEeccCC-Ce-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEE--------------
Q 041916 2 PYIYNRDGTELHCLKEHG-AV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDV-------------- 65 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~-~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~-------------- 65 (359)
|++||..+.....+..+. .. ..+.|+|||++|+.++.++.|.+||+.+++....+..+......
T Consensus 62 l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 62 YYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVG 141 (396)
T ss_dssp EEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred EEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcccc
Confidence 577883333444444433 33 44889999999999999999999999988876655545443222
Q ss_pred -----EEEcCCCCEEEEE-----eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC-CCCEEEEEeCC------CeEEE
Q 041916 66 -----MRVNPFNGVVSLG-----HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP-NGHLMATSGKE------CKIKI 128 (359)
Q Consensus 66 -----~~~sp~~~~l~sg-----~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d------~~i~i 128 (359)
+.|+|++..++.+ ..+..|.+||+.+++..... .+...+..+.|+| ++..|+.++.+ ..|.+
T Consensus 142 ~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 142 IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred ccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 3567777765544 35678999999887754433 5677899999999 88877776643 36889
Q ss_pred EEcCCceeeEeccC----CceeEEEcCCc--eEEEEcC-----CcEEEEcCCCCCCccceeecccCCCCcceEEEEEee-
Q 041916 129 WDLRKYEVLQTLPG----HAKTLDFSQKG--LLAVGTG-----SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP- 196 (359)
Q Consensus 129 wd~~~~~~~~~~~~----~i~~~~~s~~g--l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p- 196 (359)
||+..+........ .+..++|+|+| ++.++.+ +.|++||+.++. . ..+.... ... +.|+|
T Consensus 221 ~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~-~~l~~~~-----~~~-~~~s~~ 292 (396)
T 3c5m_A 221 VNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-N-EEVMVMP-----PCS-HLMSNF 292 (396)
T ss_dssp EETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-E-EEEEECC-----SEE-EEEECS
T ss_pred EECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-e-EEeeeCC-----CCC-CCccCC
Confidence 99876553332221 36778999999 5555433 349999976652 2 2222221 123 89999
Q ss_pred CCCEEEEEcC
Q 041916 197 YEDVLGIGHS 206 (359)
Q Consensus 197 ~~~~l~~~~~ 206 (359)
+|+++++++.
T Consensus 293 dg~~l~~~~~ 302 (396)
T 3c5m_A 293 DGSLMVGDGC 302 (396)
T ss_dssp SSSEEEEEEC
T ss_pred CCceEEEecC
Confidence 9998887653
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.62 E-value=1.5e-13 Score=122.11 Aligned_cols=199 Identities=11% Similarity=0.050 Sum_probs=145.0
Q ss_pred CeEEEEEecCCCEEEEEecC------------------------CeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCE
Q 041916 20 AVLKLQFLRNHFLLASINKF------------------------GQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGV 74 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~ 74 (359)
.+.+++++|+|+++++.+.+ +.|.+||..+++.+..+. .+...+..++++|+|.+
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l 104 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY 104 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence 35899999999999888777 479999999999877665 34457899999999999
Q ss_pred EEEEeCCCeEEEEeCCCCc-ceEEE---------eccCCCeEEEEEcC-CCCEEEEEe-CCCeEEEEEcCCceeeEecc-
Q 041916 75 VSLGHSGGTVTMWKPTTAA-PLIKM---------LCHQGPVSALAFHP-NGHLMATSG-KECKIKIWDLRKYEVLQTLP- 141 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~-~~~~~---------~~h~~~v~~i~~~~-~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~- 141 (359)
+++.+.++.|.+||..... .+..+ ..+......|+|+| ++.++++.+ .++.|++|| .++..+..+.
T Consensus 105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~ 183 (329)
T 3fvz_A 105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE 183 (329)
T ss_dssp EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc
Confidence 9998899999999986442 45555 23344688999999 788888876 689999999 5566666652
Q ss_pred ------------CCceeEEEcCC-c-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 142 ------------GHAKTLDFSQK-G-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 142 ------------~~i~~~~~s~~-g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
..+..++++|+ | ++++. .++.|.+||..++ ..+..+.... .+..+.+++|+| +..+.+.+
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~--~~~~~~~~~~~p-g~~~~~~g- 258 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK-EFVREIKHAS--FGRNVFAISYIP-GFLFAVNG- 258 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC-CEEEEECCTT--TTTCEEEEEEET-TEEEEEEC-
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC-cEEEEEeccc--cCCCcceeeecC-CEEEEeCC-
Confidence 12789999998 6 55554 5689999997655 4444443221 334688999999 43333322
Q ss_pred CCeEEEEEcCCCCCccccccCC
Q 041916 207 MGWSSILVPGSGEPNFDSWVAN 228 (359)
Q Consensus 207 dg~~~i~~~~~~d~~~~~~~~~ 228 (359)
.++++......+.+|+..
T Consensus 259 ----~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 259 ----KPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp ----CCCTTCSCCCCEEEEETT
T ss_pred ----CEEeccCCCcEEEEEEcC
Confidence 245555566677777653
No 180
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=4.5e-15 Score=134.70 Aligned_cols=200 Identities=8% Similarity=-0.017 Sum_probs=137.0
Q ss_pred EEe-CCCcEEEEeccCCC------eEEEEEecCCCEEEEEecC---CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 4 IYN-RDGTELHCLKEHGA------VLKLQFLRNHFLLASINKF---GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 4 iwd-~~g~~~~~l~~h~~------~~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
.+| .+|..+..+..+.. +..++|+|||++|+.+... ..|.+||+.+++.......+......+.|+|+|+
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 346 78888888876533 3678999999998776543 4789999988876443333332233488999999
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEE-------------------EEEcCCCCEEEEE-----eCCCeEEEE
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSA-------------------LAFHPNGHLMATS-----GKECKIKIW 129 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~-------------------i~~~~~~~~l~~~-----~~d~~i~iw 129 (359)
.|+.++.++.|.+||+.+++.......+.+.... +.|+|+++.++.+ ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 9999999999999999988765555444442222 3567777776654 356789999
Q ss_pred EcCCceeeEec--cCCceeEEEcC-Cc--eEEEEcC------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCC
Q 041916 130 DLRKYEVLQTL--PGHAKTLDFSQ-KG--LLAVGTG------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYE 198 (359)
Q Consensus 130 d~~~~~~~~~~--~~~i~~~~~s~-~g--l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 198 (359)
|+.+++..... ...+..+.|+| +| ++.++.+ ..|.+||+..+ . ...+..+. ....+..++|+|+|
T Consensus 174 d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~--~~~~~~~~~~spdg 249 (396)
T 3c5m_A 174 DIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS-N-VRKIKEHA--EGESCTHEFWIPDG 249 (396)
T ss_dssp ETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC-C-CEESSCCC--TTEEEEEEEECTTS
T ss_pred ECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC-c-eeEeeccC--CCccccceEECCCC
Confidence 99987764444 45678999999 67 4444433 36888886543 2 22222221 12368889999999
Q ss_pred CEEEEEcCC
Q 041916 199 DVLGIGHSM 207 (359)
Q Consensus 199 ~~l~~~~~d 207 (359)
+.|+.++.+
T Consensus 250 ~~l~~~~~~ 258 (396)
T 3c5m_A 250 SAMAYVSYF 258 (396)
T ss_dssp SCEEEEEEE
T ss_pred CEEEEEecC
Confidence 987776543
No 181
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.61 E-value=1.8e-14 Score=129.45 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=133.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCe-----------EEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGE-----------IVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
++.+++++...+|++|+.+ .+.+|++.+.. ....+ .+.. |+.++| ++.+|+++ .+|.|.+||+
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 4899999999999999988 56669975432 11223 3555 999999 88999998 8899999999
Q ss_pred CCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCceEEEEcCCcEEEEcCC
Q 041916 90 TTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKGLLAVGTGSFVQILGDF 169 (359)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~ 169 (359)
.+.........|..++.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|||+|++++..||.+++|+..
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG~~vg~~dg~i~~~~~~ 190 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 190 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred hhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCceEEEEcCCcEEEEcCC
Confidence 887766667788888988887654 38889999999999999877643 456899999999998888999999999864
Q ss_pred CCCCc--ccee------ecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 170 SGSHN--YSRY------MGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 170 ~~~~~--~~~~------~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
.. .. ...+ ..+.. +...|.+++|.+++.++++-
T Consensus 191 ~~-~~~~k~~I~~Pp~~~~~~~-~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 191 NG-EMEKQFEFSLPSELEELPV-EEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TT-EEEEEEEECCCHHHHTSCT-TTSEEEEEEESSSSEEEEEE
T ss_pred Cc-cccccceecCCcccccccC-CCeeEEEEEEecCCeEEEEE
Confidence 44 21 2223 11101 23489999999999998873
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=1.8e-13 Score=122.02 Aligned_cols=194 Identities=12% Similarity=0.039 Sum_probs=130.4
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecC---------------------------CeEEEEECCCCeEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKF---------------------------GQLRYQDVTMGEIV 53 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d---------------------------g~i~iwd~~~~~~~ 53 (359)
|++|+ .+|+.......+. +..++|+|||+.|+.++.+ ..|.+||+.+++.+
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 165 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI 165 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence 67788 5555544444444 8889999999988887642 57999999988874
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEeCCC-------eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC---
Q 041916 54 GNFRTGLGRTDVMRVNPFNGVVSLGHSGG-------TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE--- 123 (359)
Q Consensus 54 ~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-------~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d--- 123 (359)
..+.. . .+..++|+|+| ++++++.++ ...||.+.+++ ...+..+ ..+.++ +|||++|+.++.+
T Consensus 166 ~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~ 238 (347)
T 2gop_A 166 EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK 238 (347)
T ss_dssp EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence 55554 3 78899999999 777776542 33444444444 3444444 555554 9999998887754
Q ss_pred -----CeEEEEEcCCceeeEec---cCCcee-EEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916 124 -----CKIKIWDLRKYEVLQTL---PGHAKT-LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS 193 (359)
Q Consensus 124 -----~~i~iwd~~~~~~~~~~---~~~i~~-~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 193 (359)
..|.+|| +++..... ...+.. +.|+ +| +++++.++.++|| +.++ .. ..+..+.. .|.+++
T Consensus 239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~----~v~~~~ 308 (347)
T 2gop_A 239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDG-EI-KPIAKGRH----WIMGFD 308 (347)
T ss_dssp CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESS-SE-EEEECSSS----EEEEEE
T ss_pred CccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCC-ce-EEEecCCC----eEEeee
Confidence 3688888 55544333 235665 8999 88 6667788999999 7633 33 33333333 799999
Q ss_pred EeeCCCEEEEEcCCCeE-EEEEc
Q 041916 194 FRPYEDVLGIGHSMGWS-SILVP 215 (359)
Q Consensus 194 ~~p~~~~l~~~~~dg~~-~i~~~ 215 (359)
|+| .++++++.++.. .+|..
T Consensus 309 ~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 309 VDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp ESS--SEEEEEECSSSCCEEEEE
T ss_pred eeC--cEEEEEcCCCChHHheEe
Confidence 999 666666665543 45543
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=1.4e-13 Score=135.04 Aligned_cols=189 Identities=6% Similarity=-0.110 Sum_probs=133.7
Q ss_pred EEEEEecCCCEEEEEecCC-----eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe-------------
Q 041916 22 LKLQFLRNHFLLASINKFG-----QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGT------------- 83 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~------------- 83 (359)
..++|||||++||.++.++ .|++||+.+|+.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 128 ~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 128 RGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 7899999999998776543 8999999999876543322 23678999999999999888766
Q ss_pred ---EEEEeCCCCcce--EEEe--ccCCCeEEEEEcCCCCEEEEEeC-----CCeEEEEEcCC------ce-eeEec---c
Q 041916 84 ---VTMWKPTTAAPL--IKML--CHQGPVSALAFHPNGHLMATSGK-----ECKIKIWDLRK------YE-VLQTL---P 141 (359)
Q Consensus 84 ---v~lwd~~~~~~~--~~~~--~h~~~v~~i~~~~~~~~l~~~~~-----d~~i~iwd~~~------~~-~~~~~---~ 141 (359)
|++|++.++... ..+. .|...+.++.|+|||++|+.++. +..|.+||+.+ +. ....+ .
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~ 286 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF 286 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC
Confidence 999999887632 2223 24556889999999999888764 56899999986 42 23333 2
Q ss_pred CCceeEEEcCCc--eEEEEcC----CcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 142 GHAKTLDFSQKG--LLAVGTG----SFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 142 ~~i~~~~~s~~g--l~~~~~d----~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
..+. ..|+|+| ++..+.. +.|.+||+.++.. ....+..+. ....+.+++|++++.+++++..+|...+++
T Consensus 287 ~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 287 EGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC--SSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC--CCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence 2333 3588888 5555532 3699999766531 234444442 123688899998778888888888766554
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=2.1e-13 Score=117.21 Aligned_cols=205 Identities=9% Similarity=-0.041 Sum_probs=136.2
Q ss_pred eEEEeCCCcEEEEec-cC-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYNRDGTELHCLK-EH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-TGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd~~g~~~~~l~-~h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~sg 78 (359)
|++||..+.....+. .+ ..+.++++++++.++++.. ++.|.+||...... ..+. .....+.+++++|+|.++++.
T Consensus 48 i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~ 125 (270)
T 1rwi_B 48 VVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVAD 125 (270)
T ss_dssp EEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEE
T ss_pred EEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEE
Confidence 456663332222222 22 3458999999998666665 88999999876543 3333 233578999999999988887
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-c--CCceeEEEcCCc-e
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-P--GHAKTLDFSQKG-L 154 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~--~~i~~~~~s~~g-l 154 (359)
..++.|.+|+..+.............+.+++++|+|+++++...++.|.+||.......... . ..+.+++++++| +
T Consensus 126 ~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l 205 (270)
T 1rwi_B 126 RGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTV 205 (270)
T ss_dssp GGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCE
T ss_pred CCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCE
Confidence 78899999986655433222233345788999999997777777889999999876544332 1 457899999998 6
Q ss_pred EEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 155 LAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 155 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
+++. .++.|.+|+.... ........+ ...+.+++++|+|.++++...++.+.++
T Consensus 206 ~v~~~~~~~v~~~~~~~~-~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~v~~~ 260 (270)
T 1rwi_B 206 YVTEHNTNQVVKLLAGST-TSTVLPFTG----LNTPLAVAVDSDRTVYVADRGNDRVVKL 260 (270)
T ss_dssp EEEETTTSCEEEECTTCS-CCEECCCCS----CSCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred EEEECCCCcEEEEcCCCC-cceeeccCC----CCCceeEEECCCCCEEEEECCCCEEEEE
Confidence 6555 4679999996443 221111111 1268899999999766665555544444
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.60 E-value=2.4e-13 Score=118.66 Aligned_cols=198 Identities=8% Similarity=-0.056 Sum_probs=137.3
Q ss_pred CcEEEEeccCCCe-EEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 9 GTELHCLKEHGAV-LKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 9 g~~~~~l~~h~~~-~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
+..+..+..+... .+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++|+|.++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 3444555555554 9999999998 7788888999999999877 6677777788999999999998888777889999
Q ss_pred EeCCCCcceEEEecc----CCCeEEEEEcCCCCEEEEE----e-------------CCCeEEEEEcCCceeeEec--cCC
Q 041916 87 WKPTTAAPLIKMLCH----QGPVSALAFHPNGHLMATS----G-------------KECKIKIWDLRKYEVLQTL--PGH 143 (359)
Q Consensus 87 wd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~~~----~-------------~d~~i~iwd~~~~~~~~~~--~~~ 143 (359)
||+.+++........ ...+++++++|+|+++++. + ..+.|..+|.. +...... ...
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~ 173 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVK 173 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCC
Confidence 999887654332221 2346789999999988873 2 13466667665 4432222 335
Q ss_pred ceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCc---cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 144 AKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHN---YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 144 i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+..++|+|+| ++++. .++.|.+|++...... ...+ .. ....+.+++++++|.++++. ++.+.+|.+
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TV---EPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CC---SSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eC---CCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 6899999999 44443 4689999997522222 1222 11 22356789999999866665 554555543
No 186
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=2.4e-12 Score=122.09 Aligned_cols=214 Identities=10% Similarity=0.006 Sum_probs=152.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECC--CCeEEEEEecCCCCeEEEEEc----CCCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVT--MGEIVGNFRTGLGRTDVMRVN----PFNG 73 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s----p~~~ 73 (359)
+|.++| .+++.+.++.....+..+.|+|||++|++++.|+.|.+||+. +++.+..+.... ....++|+ |+|+
T Consensus 178 ~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk 256 (567)
T 1qks_A 178 QIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDK 256 (567)
T ss_dssp EEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTT
T ss_pred eEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCC
Confidence 478999 889999999877777899999999999999999999999996 888888887654 46789999 6998
Q ss_pred EEEEEe-CCCeEEEEeCCCCcceEEEec----------cCC-CeEEEEEcCCCCE-EEEEeCCCeEEEEEcCCcee--eE
Q 041916 74 VVSLGH-SGGTVTMWKPTTAAPLIKMLC----------HQG-PVSALAFHPNGHL-MATSGKECKIKIWDLRKYEV--LQ 138 (359)
Q Consensus 74 ~l~sg~-~dg~v~lwd~~~~~~~~~~~~----------h~~-~v~~i~~~~~~~~-l~~~~~d~~i~iwd~~~~~~--~~ 138 (359)
++++++ .+++|.++|..+.+++..+.. |.. .+..+.+++++.. ++....+|.|.++|...... +.
T Consensus 257 ~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~ 336 (567)
T 1qks_A 257 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT 336 (567)
T ss_dssp EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceee
Confidence 877765 559999999999988877652 222 5788999997665 44555679999999987532 22
Q ss_pred ec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCccceeec-ccCCCCcceEEEEEeeCC-CEEEEEc-CCCeE
Q 041916 139 TL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMG-HSMVKGYQIGKVSFRPYE-DVLGIGH-SMGWS 210 (359)
Q Consensus 139 ~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~v~~~~~~p~~-~~l~~~~-~dg~~ 210 (359)
.+ ......+.|+|+| +++++ .++.|.++|+.++ +....+.. -...+...-..+ ++|++ .+++++. .++.+
T Consensus 337 ~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~-kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~V 414 (567)
T 1qks_A 337 EISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSV 414 (567)
T ss_dssp EEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEE
T ss_pred eeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCC-cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeE
Confidence 23 2356789999999 44444 5689999998776 33333322 111111111122 57774 4444554 34677
Q ss_pred EEEEcCC
Q 041916 211 SILVPGS 217 (359)
Q Consensus 211 ~i~~~~~ 217 (359)
.++.+..
T Consensus 415 svid~~~ 421 (567)
T 1qks_A 415 ALIGTDP 421 (567)
T ss_dssp EEEECCT
T ss_pred EEecCCC
Confidence 7776554
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=4.2e-13 Score=116.08 Aligned_cols=177 Identities=14% Similarity=0.073 Sum_probs=138.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccC-CCeE
Q 041916 29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-GPVS 106 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-~~v~ 106 (359)
.+++|++++.++.|.+||..+|+.+..+..+. ..+++++++|+|++|+ +.++.|..||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 36789999999999999999999999999876 4789999999999888 45778999999 899888888653 4788
Q ss_pred EEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEecc---------CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc
Q 041916 107 ALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTLP---------GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN 174 (359)
Q Consensus 107 ~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~---------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~ 174 (359)
++.+.|+|+++++.+. ++.|..+|. +++.+..+. .....+++.++| +++...++.|.+||.. + +.
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G-~~ 157 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G-QL 157 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S-CE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C-CE
Confidence 9999999999999887 788888886 677766652 134567788999 4445567999999965 5 55
Q ss_pred cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+..+.... .+.++.+.+++.+++++..++.+..+.+.
T Consensus 158 ~w~~~~~~-----~~~~~~~~~~g~~~v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 158 LNSVKLSG-----TPFSSAFLDNGDCLVACGDAHCFVQLNLE 194 (276)
T ss_dssp EEEEECSS-----CCCEEEECTTSCEEEECBTTSEEEEECTT
T ss_pred EEEEECCC-----CccceeEcCCCCEEEEeCCCCeEEEEeCc
Confidence 55555432 45677889999999888888755555433
No 188
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=1.8e-13 Score=133.92 Aligned_cols=192 Identities=8% Similarity=-0.087 Sum_probs=131.8
Q ss_pred CCCe-EEEEEecCCCEEEE-----EecCCeEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEeCCCe------
Q 041916 18 HGAV-LKLQFLRNHFLLAS-----INKFGQLRYQDVTMGEIVGNFRTGLGRT--DVMRVNPFNGVVSLGHSGGT------ 83 (359)
Q Consensus 18 h~~~-~~l~~s~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v--~~~~~sp~~~~l~sg~~dg~------ 83 (359)
|... .+++|||||++||. |+.+..|++||+.+|+.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 4434 88999999999884 3345689999999988641 1122222 68999999999999988776
Q ss_pred -------EEEEeCCCCcc--eEEEe--ccCCCeEEEEEcCCCCEEEEEeCCC----eEEEEEcCCceeeEec--cCCcee
Q 041916 84 -------VTMWKPTTAAP--LIKML--CHQGPVSALAFHPNGHLMATSGKEC----KIKIWDLRKYEVLQTL--PGHAKT 146 (359)
Q Consensus 84 -------v~lwd~~~~~~--~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~----~i~iwd~~~~~~~~~~--~~~i~~ 146 (359)
|++|++.++.. ...+. .|...+.++.|+|||++|+.++.++ .|.+||..++...... ...+..
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~ 276 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYE 276 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEE
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEE
Confidence 99999988763 22232 4556789999999999998877665 6777776555432222 334555
Q ss_pred EEEcCCc-eEEEEc----CCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 147 LDFSQKG-LLAVGT----GSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 147 ~~~s~~g-l~~~~~----d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
..+ ++| ++..+. ++.|.+||+.++.. ....+..+. +...+.+++|+ ++.++++...++...+++.
T Consensus 277 ~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 277 VHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED--SSASLLSVSIV-GGHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC--SSCEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC--CCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 556 455 555443 47899999766521 123343331 23368888988 6778888888888777654
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=1.9e-12 Score=114.83 Aligned_cols=204 Identities=10% Similarity=0.032 Sum_probs=136.7
Q ss_pred eEEEe-CCCcEEEEeccC-CCeEEEEEecCCCEEEEEecC----CeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCC
Q 041916 2 PYIYN-RDGTELHCLKEH-GAVLKLQFLRNHFLLASINKF----GQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-~~~~~l~~s~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~ 73 (359)
|++|| .++.....+..+ ..+.+++|+|++.++++...+ +.|.+||..++.....+. .+...+.+++++|+|.
T Consensus 68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~ 147 (333)
T 2dg1_A 68 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 147 (333)
T ss_dssp EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC
T ss_pred EEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC
Confidence 67888 556655444333 345999999999988877666 689999998876543333 2345689999999998
Q ss_pred EEEEEeC------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCC-ceeeE-------
Q 041916 74 VVSLGHS------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRK-YEVLQ------- 138 (359)
Q Consensus 74 ~l~sg~~------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~-~~~~~------- 138 (359)
++++... .+.|..||..+++.. .+..+...+.+++|+|+|++|+.+ +.++.|.+||+.+ +..+.
T Consensus 148 l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~ 226 (333)
T 2dg1_A 148 FYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226 (333)
T ss_dssp EEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred EEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE
Confidence 8877654 356777776654433 333334457899999999866554 4578999999964 32221
Q ss_pred -eccC--CceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccC--CCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 139 -TLPG--HAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSM--VKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 139 -~~~~--~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
.+.+ .+..++++++| ++++. .++.|.+||. .+ .....+..+.. .+...+.+++|+|++..|++++.+|
T Consensus 227 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g-~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 227 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG-YPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS-CEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CC-CEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 1222 56889999999 55544 5689999996 33 34444432210 0011478999999988777666654
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=1.2e-12 Score=116.27 Aligned_cols=204 Identities=10% Similarity=-0.001 Sum_probs=143.4
Q ss_pred eEEEe-CCCcEEEEecc------CCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 041916 2 PYIYN-RDGTELHCLKE------HGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG 73 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~------h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~ 73 (359)
|.+|| .+++....+.. ... +..+.+. ++.++++...++.|.+||..+++.+..+.. ...+..++++|++.
T Consensus 19 l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~ 96 (328)
T 3dsm_A 19 LSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEK 96 (328)
T ss_dssp EEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTE
T ss_pred EEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCe
Confidence 67888 66776554421 112 3778775 355566666689999999999999888863 46788999999985
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEe--CCCeEEEEEcCCceeeEec--cCCc
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSG--KECKIKIWDLRKYEVLQTL--PGHA 144 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~--~~~i 144 (359)
++++...++.|.+||+.+++....+.... .....+++ ++..+++++ .++.|.+||+.+++.+..+ ...+
T Consensus 97 lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p 174 (328)
T 3dsm_A 97 AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQP 174 (328)
T ss_dssp EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCB
T ss_pred EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCc
Confidence 55555489999999999988777666433 13456777 445555555 4889999999999887776 3456
Q ss_pred eeEEEcCCc-eEEEEcC-----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 145 KTLDFSQKG-LLAVGTG-----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 145 ~~~~~s~~g-l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
..++++|+| +++++.+ +.|.+||..++ .....+... .+.....++|+|+++.|.++.. .+.+
T Consensus 175 ~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-~v~~~~~~~---~g~~p~~la~~~d~~~lyv~~~--~v~~ 248 (328)
T 3dsm_A 175 TSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF-TVEKQFKFK---LGDWPSEVQLNGTRDTLYWINN--DIWR 248 (328)
T ss_dssp CCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT-EEEEEEECC---TTCCCEEEEECTTSCEEEEESS--SEEE
T ss_pred cceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC-eEEEEEecC---CCCCceeEEEecCCCEEEEEcc--EEEE
Confidence 889999999 5555432 68999997665 333333321 1236889999999998877654 4444
Q ss_pred EEc
Q 041916 213 LVP 215 (359)
Q Consensus 213 ~~~ 215 (359)
+..
T Consensus 249 ~d~ 251 (328)
T 3dsm_A 249 MPV 251 (328)
T ss_dssp EET
T ss_pred EEC
Confidence 443
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=7.5e-13 Score=129.86 Aligned_cols=210 Identities=9% Similarity=-0.071 Sum_probs=141.8
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCe----------------EEEEECCCCeE--EEEEe--cCC
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQ----------------LRYQDVTMGEI--VGNFR--TGL 60 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~----------------i~iwd~~~~~~--~~~~~--~~~ 60 (359)
|++|| .+|+.+.....+..+.+++|+|||+.|+.++.++. |++|++.++.. ...+. .+.
T Consensus 153 i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~ 232 (710)
T 2xdw_A 153 IKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEP 232 (710)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred EEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCC
Confidence 78999 67766553333333467999999999998887766 99999988762 22223 245
Q ss_pred CCeEEEEEcCCCCEEEEEeC-----CCeEEEEeCCC------Cc-ceEEEeccCCCeEEEEEcCCCCEEEEEeCC----C
Q 041916 61 GRTDVMRVNPFNGVVSLGHS-----GGTVTMWKPTT------AA-PLIKMLCHQGPVSALAFHPNGHLMATSGKE----C 124 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~-----dg~v~lwd~~~------~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d----~ 124 (359)
..+..+.|+|||++|+.++. +..|.+||+.+ +. ....+..+...+.. .|+|+|..|+..+.. +
T Consensus 233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~ 311 (710)
T 2xdw_A 233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNY 311 (710)
T ss_dssp TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTC
T ss_pred eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCC
Confidence 56789999999998887764 56899999986 43 46667667666655 588999988776653 3
Q ss_pred eEEEEEcCCcee--eEec----c-CCceeEEEcCCc--eEEEEcCC--cEEEEcCCCCCCccceeecccCCCCcceEEEE
Q 041916 125 KIKIWDLRKYEV--LQTL----P-GHAKTLDFSQKG--LLAVGTGS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVS 193 (359)
Q Consensus 125 ~i~iwd~~~~~~--~~~~----~-~~i~~~~~s~~g--l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 193 (359)
.|.+||+.++.. ...+ . ..+..++|++++ +++...++ .|.+|++.++ .....+..+.. .+..+.
T Consensus 312 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~~~~----~v~~~~ 386 (710)
T 2xdw_A 312 RLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVG----SVVGYS 386 (710)
T ss_dssp EEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSS----EEEEEE
T ss_pred EEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC-CEEEecCCCCc----eEEEEe
Confidence 699999987631 1222 2 246788999777 44555666 4677776455 33344444433 788899
Q ss_pred EeeCCCEEEEEcC----CCeEEEEEcCC
Q 041916 194 FRPYEDVLGIGHS----MGWSSILVPGS 217 (359)
Q Consensus 194 ~~p~~~~l~~~~~----dg~~~i~~~~~ 217 (359)
++|++..++.... .+.+..+...+
T Consensus 387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 387 GQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp CCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred cCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 9999876664322 23455555443
No 192
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=3.5e-12 Score=115.06 Aligned_cols=205 Identities=11% Similarity=0.011 Sum_probs=131.8
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC-------CCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG-------LGR 62 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~ 62 (359)
+|++|| .+++.+.++.....+ .++|+|||++|+++. .++.|.+||..+++.+..+... ...
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 478999 888888888876666 999999999998876 3678999999998888777543 123
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCC-CEEEEEeCC---------------
Q 041916 63 TDVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNG-HLMATSGKE--------------- 123 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~-~~l~~~~~d--------------- 123 (359)
...++|+|||++|++++. ++.|.++| .+++.+.. +... + ++.+.|++ ..+++.+.|
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~ 201 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA 201 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEE
Confidence 568999999999998874 57899999 98887766 5321 1 12222222 112223333
Q ss_pred --------------------------------CeEEEEEcCCce--eeEec-------------cCCceeEEEcCCc--e
Q 041916 124 --------------------------------CKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSQKG--L 154 (359)
Q Consensus 124 --------------------------------~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~s~~g--l 154 (359)
+.+.+.|+.+.. .+..+ +.....+.++|++ +
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 344444443321 11111 1112236788887 4
Q ss_pred EEEEc----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEc-CCCeEEEEEcCC
Q 041916 155 LAVGT----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSSILVPGS 217 (359)
Q Consensus 155 ~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~~~i~~~~~ 217 (359)
+++.. ++.|.++|+.+. +.+..+..- ....+++|+|||+ .++++. .++.+.++...+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~-~vv~~i~~g-----~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVG-QTSSQISLG-----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCC-EEEEEEECC-----CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 44432 357999997766 444444321 1588999999998 666655 356666655443
No 193
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.56 E-value=3.4e-13 Score=121.36 Aligned_cols=190 Identities=12% Similarity=0.039 Sum_probs=124.7
Q ss_pred eEEEe-CCCcEEEEeccC-------CCeEEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEE-EecCCCCeEEEEEcC
Q 041916 2 PYIYN-RDGTELHCLKEH-------GAVLKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGN-FRTGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-------~~~~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp 70 (359)
|.+|| .+++.+..+..+ ..+..++|+|||++|++++. +++|.+||+.+++.+.. +... ....+.+.|
T Consensus 83 v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p 160 (361)
T 2oiz_A 83 VEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQP 160 (361)
T ss_dssp EEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECT
T ss_pred EEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcC
Confidence 78999 788888887643 23588999999999998864 58999999999988877 5432 112233444
Q ss_pred CC-CEEEEEeCCCeEEEEeCCC-Ccce-------------------------------------------------EEEe
Q 041916 71 FN-GVVSLGHSGGTVTMWKPTT-AAPL-------------------------------------------------IKML 99 (359)
Q Consensus 71 ~~-~~l~sg~~dg~v~lwd~~~-~~~~-------------------------------------------------~~~~ 99 (359)
++ ..+++.+.||.+.+|++.. ++.. ..+.
T Consensus 161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~ 240 (361)
T 2oiz_A 161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS 240 (361)
T ss_dssp TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence 43 3444444445444444322 1111 0000
Q ss_pred c------c----CCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--e
Q 041916 100 C------H----QGPVSALAFHPNGHLMATSGK-----------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--L 154 (359)
Q Consensus 100 ~------h----~~~v~~i~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l 154 (359)
. + ......++|+|++..++++.. .+.|.+||+.+++.+..+ .. +.+++|+|+| +
T Consensus 241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l 319 (361)
T 2oiz_A 241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLM 319 (361)
T ss_dssp SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEE
T ss_pred ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEE
Confidence 0 0 011112789999888877643 348999999999998887 44 9999999999 4
Q ss_pred EEEEcCCcEEEEcCCCCC-CccceeecccCCCCcceEEEEEeeCCC
Q 041916 155 LAVGTGSFVQILGDFSGS-HNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
++++ ++.|.+||..++. +.+..+... +.....++++|+|.
T Consensus 320 ~v~n-~~~v~v~D~~t~~l~~~~~i~~~----G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 320 LTLD-GGNVNVYDISQPEPKLLRTIEGA----AEASLQVQFHPVGG 360 (361)
T ss_dssp EEEC-SSCEEEEECSSSSCEEEEEETTS----CSSEEEEEECCCSC
T ss_pred EEeC-CCeEEEEECCCCcceeeEEeccC----CCCcEEEEecCCCC
Confidence 4444 4999999976651 233333233 23678899999985
No 194
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.53 E-value=8.4e-12 Score=109.07 Aligned_cols=195 Identities=10% Similarity=0.047 Sum_probs=128.0
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~ 76 (359)
|+.|| .++.. ..+.....+.+++++|+|.++++. ++.|.+||..+++........ ...++.++++|+|++++
T Consensus 37 i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~ 113 (297)
T 3g4e_A 37 VCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFA 113 (297)
T ss_dssp EEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEE
T ss_pred EEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEE
Confidence 56777 34433 444444456999999999965543 568999999888754333221 23578999999999777
Q ss_pred EEeC-----------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEc--CCcee-----e
Q 041916 77 LGHS-----------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDL--RKYEV-----L 137 (359)
Q Consensus 77 sg~~-----------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~--~~~~~-----~ 137 (359)
+... .+.|..++.. +. +..+..+....+.++|+|+++.|+.+ +.++.|.+||+ .++.. +
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~ 191 (297)
T 3g4e_A 114 GTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSV 191 (297)
T ss_dssp EEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEE
Confidence 5432 2345555543 33 33333344456899999999977554 55789999997 34432 2
Q ss_pred Eec---cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEEEcC
Q 041916 138 QTL---PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGIGHS 206 (359)
Q Consensus 138 ~~~---~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~ 206 (359)
..+ .+.+..++++++| ++++. .++.|..||..++ .....+..+. ..+++++|. |+++.|.+++.
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~----~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPV----DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSS----SBEEEEEEESGGGCEEEEEEB
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCC----CCceEEEEeCCCCCEEEEEcC
Confidence 223 2457899999999 55554 5678999997656 4555554432 279999998 88886655443
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=2e-12 Score=110.91 Aligned_cols=189 Identities=9% Similarity=-0.037 Sum_probs=129.0
Q ss_pred CeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 20 AVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
.+.++++++++.+++ +.+.++.|.+||..++........+...+.++++++++.++++.. ++.|.+||...... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eee
Confidence 669999999999777 446788999999765543222223335678999999998766665 88999999876543 333
Q ss_pred e-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCC
Q 041916 99 L-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGS 172 (359)
Q Consensus 99 ~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~ 172 (359)
. .....+.+++++|+|+++++...++.|.+||..+....... ...+.+++++|+| ++++. .++.|.+||....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~- 181 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN- 181 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-
Confidence 2 23356899999999997777777889999987665433222 2357899999999 66655 4689999996544
Q ss_pred CccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 173 HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
......... ...+.+++++++|.++++...++.+.++..
T Consensus 182 ~~~~~~~~~----~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 182 NQVVLPFTD----ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp CEEECCCSS----CCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred ceEeecccC----CCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence 221111111 136889999999977766666665555554
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.50 E-value=5.3e-12 Score=119.76 Aligned_cols=183 Identities=9% Similarity=0.019 Sum_probs=136.4
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCcceEEEeccCCCe
Q 041916 28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT--TAAPLIKMLCHQGPV 105 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~--~~~~~~~~~~h~~~v 105 (359)
|.+.++++...++.|.++|..+++.+..+... ..+..+.|+|||+++++++.|+.|.+||+. +++.+..+....+ .
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~-P 242 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-A 242 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-E
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC-C
Confidence 44556777778999999999999999888754 356799999999999999999999999996 7777777765443 5
Q ss_pred EEEEEc----CCCCEEEEEeC-CCeEEEEEcCCceeeEecc--C------------CceeEEEcCCc---eEEEEcCCcE
Q 041916 106 SALAFH----PNGHLMATSGK-ECKIKIWDLRKYEVLQTLP--G------------HAKTLDFSQKG---LLAVGTGSFV 163 (359)
Q Consensus 106 ~~i~~~----~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--~------------~i~~~~~s~~g---l~~~~~d~~i 163 (359)
..++|+ |||+++++++. +++|.++|..+.+++..+. + .+..+..++++ ++....+|.|
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 789999 69999888775 5899999999998877662 1 35678888887 3444456999
Q ss_pred EEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEc-CCCeEEEEEcC
Q 041916 164 QILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH-SMGWSSILVPG 216 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~~~ 216 (359)
.++|............. .+....++.|+|++++++++. .++.+.++.+.
T Consensus 323 ~~vd~~~~~~~~v~~i~----~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~ 372 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEIS----AERFLHDGGLDGSHRYFITAANARNKLVVIDTK 372 (567)
T ss_dssp EEEETTCSSEEEEEEEE----CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred EEEecCCCccceeeeee----ccccccCceECCCCCEEEEEeCCCCeEEEEECC
Confidence 99996553211111111 122577889999999887655 45556665544
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.50 E-value=5.4e-11 Score=103.29 Aligned_cols=205 Identities=10% Similarity=0.003 Sum_probs=143.0
Q ss_pred eEEEeCCCcEEEEe-cc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCL-KE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l-~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s 77 (359)
|.+||..+...... .. ...+.++++++++.++++...++.|..||.. +.. ..+. .....+.++++.|++.++++
T Consensus 38 v~~~d~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~ 115 (299)
T 2z2n_A 38 ISCINLDGKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFT 115 (299)
T ss_dssp EEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEE
T ss_pred EEEEcCCCCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEE
Confidence 56777445433221 22 2345999999999988887778899999986 443 2332 24457899999999998888
Q ss_pred EeCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-c---cCCceeEEEcCC
Q 041916 78 GHSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-L---PGHAKTLDFSQK 152 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~---~~~i~~~~~s~~ 152 (359)
...++.|.+||. ++..... ...+...+.+++++++|.++++...++.|..||. +++.... . ...+.+++++++
T Consensus 116 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~ 193 (299)
T 2z2n_A 116 EMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGND 193 (299)
T ss_dssp ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred ecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence 878889999998 5543322 2233456899999999988877777789999999 6654432 2 234689999999
Q ss_pred c-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 153 G-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 153 g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
| ++++. .++.|.+||. ++ .. ..+.... ....+.+++++++|.++++...++.+..+.+
T Consensus 194 g~l~v~~~~~~~i~~~~~-~g-~~-~~~~~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 194 DALWFVEIIGNKIGRITT-SG-EI-TEFKIPT--PNARPHAITAGAGIDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp SSEEEEETTTTEEEEECT-TC-CE-EEEECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred CCEEEEccCCceEEEECC-CC-cE-EEEECCC--CCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence 9 66665 4689999997 54 22 2221111 2236889999999987777666776777765
No 198
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.48 E-value=6.3e-11 Score=103.85 Aligned_cols=204 Identities=14% Similarity=0.120 Sum_probs=134.5
Q ss_pred eEEEe-CCCcEEEEec----cC-CCeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEE-Eec----CCCCeEEEEEc
Q 041916 2 PYIYN-RDGTELHCLK----EH-GAVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGN-FRT----GLGRTDVMRVN 69 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~----~h-~~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~----~~~~v~~~~~s 69 (359)
|++|| .+|+...... ++ ..+.+++++++ +.++++.. .+.|.+||.. ++.... ... ....+.+++++
T Consensus 48 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d 125 (314)
T 1pjx_A 48 ILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD 125 (314)
T ss_dssp EEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred EEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC
Confidence 67888 6666543222 12 34589999999 76555544 4479999998 765433 221 12357899999
Q ss_pred CCCCEEEEEeCC---------------CeEEEEeCCCCcceEEEeccCCCeEEEEEc----CCCCEEEEE-eCCCeEEEE
Q 041916 70 PFNGVVSLGHSG---------------GTVTMWKPTTAAPLIKMLCHQGPVSALAFH----PNGHLMATS-GKECKIKIW 129 (359)
Q Consensus 70 p~~~~l~sg~~d---------------g~v~lwd~~~~~~~~~~~~h~~~v~~i~~~----~~~~~l~~~-~~d~~i~iw 129 (359)
|+|.++++...+ +.|..||.. ++.. .+..+......++|+ |+++.|+++ ..++.|.+|
T Consensus 126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~ 203 (314)
T 1pjx_A 126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSY 203 (314)
T ss_dssp TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEE
Confidence 999988877655 578888876 5433 333334456889999 999766555 567899999
Q ss_pred EcC-Cce-----eeEecc----CCceeEEEcCCc-eEEE-EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeC
Q 041916 130 DLR-KYE-----VLQTLP----GHAKTLDFSQKG-LLAV-GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPY 197 (359)
Q Consensus 130 d~~-~~~-----~~~~~~----~~i~~~~~s~~g-l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 197 (359)
|+. ++. ....+. ..+..++++++| ++++ ..++.|.+||..++ .....+..+. ..+.+++|+|+
T Consensus 204 ~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~----~~~~~i~~~~d 278 (314)
T 1pjx_A 204 DIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG-QPKMRIRCPF----EKPSNLHFKPQ 278 (314)
T ss_dssp EEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB-SCSEEEECSS----SCEEEEEECTT
T ss_pred ECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC-cEeEEEeCCC----CCceeEEECCC
Confidence 986 443 223333 457889999999 5554 46789999996544 3444443332 37899999999
Q ss_pred CCEEEEE-cCCCeEEEEE
Q 041916 198 EDVLGIG-HSMGWSSILV 214 (359)
Q Consensus 198 ~~~l~~~-~~dg~~~i~~ 214 (359)
++.|.++ ..++.+..+.
T Consensus 279 g~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 279 TKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCeEEEEe
Confidence 9855444 3445444444
No 199
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.47 E-value=1.9e-11 Score=107.27 Aligned_cols=199 Identities=14% Similarity=0.085 Sum_probs=134.6
Q ss_pred eEEEeCCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEE
Q 041916 2 PYIYNRDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~ 76 (359)
|+.|+.+|.. ..+..+.. +.+++++++|+++++...++.|.+|+.. +......... ...++.++++|+|.+++
T Consensus 69 i~~~~~~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~ 146 (305)
T 3dr2_A 69 VLGWREDGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWF 146 (305)
T ss_dssp EEEEETTSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEE
T ss_pred EEEEeCCCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEE
Confidence 5566755553 34444444 4999999999977766666889999986 6543222111 13467899999999888
Q ss_pred E----EeC-------------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC------CeEEEEEcCC
Q 041916 77 L----GHS-------------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE------CKIKIWDLRK 133 (359)
Q Consensus 77 s----g~~-------------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d------~~i~iwd~~~ 133 (359)
+ |.. .+.|..||..+++..... .....+.++|+||++.|+++... +.|.+||+..
T Consensus 147 td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 147 TDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp ECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred eCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 6 332 356888888777654333 34456889999999988887665 7899999875
Q ss_pred cee--eEec----cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 134 YEV--LQTL----PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 134 ~~~--~~~~----~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
... ...+ .+.+..++++++| +++++. +.|.+|+. .+ .....+..+. .+.+++|+|+++.|.+++.
T Consensus 225 ~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~-~gv~~~~~-~g-~~~~~~~~~~-----~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 225 GALHDRRHFASVPDGLPDGFCVDRGGWLWSSSG-TGVCVFDS-DG-QLLGHIPTPG-----TASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp TEEEEEEEEECCSSSCCCSEEECTTSCEEECCS-SEEEEECT-TS-CEEEEEECSS-----CCCEEEECTTSCEEEEEET
T ss_pred CCccCCeEEEECCCCCCCeEEECCCCCEEEecC-CcEEEECC-CC-CEEEEEECCC-----ceeEEEEeCCCCEEEEEcC
Confidence 431 1111 3456789999999 666654 45999995 33 4444444332 4888999999988888777
Q ss_pred CCeEEE
Q 041916 207 MGWSSI 212 (359)
Q Consensus 207 dg~~~i 212 (359)
++...+
T Consensus 297 ~~l~~~ 302 (305)
T 3dr2_A 297 PCLWML 302 (305)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 764443
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.47 E-value=1.4e-11 Score=110.19 Aligned_cols=97 Identities=6% Similarity=-0.087 Sum_probs=79.1
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecCC-------CCe
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTGL-------GRT 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~-------~~v 63 (359)
|.++| .+++.+.++.....+. ++++|||++|++++ .++.|.+||..+++.+..+.... ...
T Consensus 61 V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P 139 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP 139 (386)
T ss_dssp EEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCG
T ss_pred EEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCC
Confidence 77889 8889998888766665 99999999887765 36789999999999988886432 246
Q ss_pred EEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEEe
Q 041916 64 DVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~~~ 99 (359)
..++|+|||++++++.. ++.|.++|+.+++.+.++.
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~ 177 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 177 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 78999999999888764 6899999999987766653
No 201
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.46 E-value=1.3e-10 Score=102.97 Aligned_cols=194 Identities=13% Similarity=0.047 Sum_probs=127.4
Q ss_pred eEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT----GLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~s 77 (359)
|++||..+..+..+.....+.+++|+|+|.++++. .+ .|.+||..+++....... ....+++++++|+|.++++
T Consensus 73 i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~ 150 (326)
T 2ghs_A 73 LHELHLASGRKTVHALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIG 150 (326)
T ss_dssp EEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEE
T ss_pred EEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEE
Confidence 56777444444444433446999999999877764 34 599999988875433221 1235889999999987765
Q ss_pred EeC------CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC--Cc-e-----eeEec--
Q 041916 78 GHS------GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLR--KY-E-----VLQTL-- 140 (359)
Q Consensus 78 g~~------dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~--~~-~-----~~~~~-- 140 (359)
... .+.|..++ +++. ..+..+......++|+|+|+.|+.+ +.++.|.+||+. ++ . .+..+
T Consensus 151 ~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~ 227 (326)
T 2ghs_A 151 TMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTG 227 (326)
T ss_dssp EEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTT
T ss_pred eCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCC
Confidence 542 24566666 4443 3333333457899999999877655 456899999986 55 3 22233
Q ss_pred -cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe-eCCCEEEEEcC
Q 041916 141 -PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR-PYEDVLGIGHS 206 (359)
Q Consensus 141 -~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~~~~~ 206 (359)
.+.+..++++++| ++++. .++.|.+||. .+ .....+..+. ..+++++|+ |+++.|.+++.
T Consensus 228 ~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~----~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 228 IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPG----KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSC----SBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC-CEEEEEECCC----CCcEEEEEecCCCCEEEEEec
Confidence 2346789999999 55554 4688999996 44 3444444332 269999998 88876655443
No 202
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.46 E-value=1.9e-11 Score=111.26 Aligned_cols=211 Identities=11% Similarity=0.023 Sum_probs=143.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC-------CCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG-------LGR 62 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~ 62 (359)
+|.++| .+++.+.++.....+ .++++||+++|++++ .++.|.++|..+++.+..+... ...
T Consensus 100 ~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~ 178 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTY 178 (426)
T ss_dssp EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred eEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCC
Confidence 377899 888999999877777 999999999888775 3679999999999998887642 234
Q ss_pred eEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceEEEeccC-------CCeEEEE------------------------
Q 041916 63 TDVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLIKMLCHQ-------GPVSALA------------------------ 109 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~~~~~h~-------~~v~~i~------------------------ 109 (359)
...++|+|||++++++.. ++.|.+.|+.+++.+..+.... +.-..++
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 568999999999998874 5789999999988766654210 0001122
Q ss_pred -------------EcCCCCEEEEEeCCCeEEEEEcCCceee--Eec-------------cCCceeEEEcCCc--eEEEEc
Q 041916 110 -------------FHPNGHLMATSGKECKIKIWDLRKYEVL--QTL-------------PGHAKTLDFSQKG--LLAVGT 159 (359)
Q Consensus 110 -------------~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~-------------~~~i~~~~~s~~g--l~~~~~ 159 (359)
|.+++..++..+..+.|.+.|+...... ..+ +.....++++|++ +++...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 3444444444455566666676543211 111 1122347899998 444432
Q ss_pred ----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEc-CCCeEEEEEcCCC
Q 041916 160 ----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGH-SMGWSSILVPGSG 218 (359)
Q Consensus 160 ----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~-~dg~~~i~~~~~~ 218 (359)
++.|.++|+.+. +.+..+..-. ...++.|+|+++ .++++. .++.+.++...+.
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~-kvv~~I~vg~-----~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETG-ERINKIELGH-----EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTC-CEEEEEEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred ccccccccCCCCEEEEEECCCC-eEEEEEECCC-----CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 357999998776 4444443221 588999999998 777766 4777777775443
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.44 E-value=1.2e-11 Score=121.96 Aligned_cols=187 Identities=9% Similarity=-0.024 Sum_probs=125.1
Q ss_pred EEEEEecCCCEEEEEecC-----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCe-------------
Q 041916 22 LKLQFLRNHFLLASINKF-----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGT------------- 83 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~------------- 83 (359)
..++|||||++||.++.+ ..|++||+.+|+.+... .+...+..++|+|| +.|+.++.++.
T Consensus 166 ~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 166 DAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred EeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 789999999999887653 46999999999876532 12222357899999 98888876654
Q ss_pred -EEEEeCCCCcc--eEEEec--cCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCc--eeeEec---cCCceeEE
Q 041916 84 -VTMWKPTTAAP--LIKMLC--HQGPVSALAFHPNGHLMATSGKEC-----KIKIWDLRKY--EVLQTL---PGHAKTLD 148 (359)
Q Consensus 84 -v~lwd~~~~~~--~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~--~~~~~~---~~~i~~~~ 148 (359)
|.+|++.++.. ...+.. +...+.++.|+|||++|+..+.++ .|++||+.++ .+...+ ...+...
T Consensus 244 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~- 322 (741)
T 1yr2_A 244 TVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF- 322 (741)
T ss_dssp EEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-
T ss_pred EEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-
Confidence 89999987753 223332 334588999999999988877543 8999999876 313333 2233333
Q ss_pred EcCCc--eEEEEc----CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 149 FSQKG--LLAVGT----GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 149 ~s~~g--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
++|+| ++..+. .+.|.+||+.++......+..+ ....+.+++|+ ++.++++...+|...+++.
T Consensus 323 ~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~---~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 323 VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE---SKDNLESVGIA-GNRLFASYIHDAKSQVLAF 391 (741)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC---CSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC---CCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence 34777 555554 3469999976531122233333 12257778887 5667777788887776653
No 204
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=1.8e-10 Score=99.99 Aligned_cols=198 Identities=9% Similarity=-0.061 Sum_probs=136.3
Q ss_pred eEEEeCCCcEEE-Eec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYNRDGTELH-CLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGN-FRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd~~g~~~~-~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|+.||.++.... .+. ....+.+++++|++.++++...++.|.+||. ++..... ...+...+.++++.++|.++++.
T Consensus 80 i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 80 IGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp EEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred EEEECCCCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence 566774454321 222 2234599999999988888777889999998 5654432 22344578999999999888877
Q ss_pred eCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-cc---CCceeEEEcCCc
Q 041916 79 HSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-LP---GHAKTLDFSQKG 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~---~~i~~~~~s~~g 153 (359)
..++.|..||. +++.... +..+...+.+++++++|.++++...++.|.+||. ++..... .. ..+.+++++++|
T Consensus 159 ~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g 236 (299)
T 2z2n_A 159 NQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGI 236 (299)
T ss_dssp TTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTT
T ss_pred CCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCC
Confidence 77889999998 6654332 2234456889999999997777667889999999 6654322 22 457899999999
Q ss_pred -eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 154 -LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 154 -l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
++++. .++.|..||. .+ . ...+.... ....+.++++ +++.++++.+.++
T Consensus 237 ~l~v~~~~~~~i~~~d~-~g-~-~~~~~~~~--~~~~~~~i~~-~~g~l~v~~~~~~ 287 (299)
T 2z2n_A 237 DLWFTEWGANKIGRLTS-NN-I-IEEYPIQI--KSAEPHGICF-DGETIWFAMECDK 287 (299)
T ss_dssp CEEEEETTTTEEEEEET-TT-E-EEEEECSS--SSCCEEEEEE-CSSCEEEEETTTE
T ss_pred CEEEeccCCceEEEECC-CC-c-eEEEeCCC--CCCccceEEe-cCCCEEEEecCCc
Confidence 66665 5689999996 33 2 22222111 2236889999 8888766655443
No 205
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.44 E-value=2.9e-12 Score=125.40 Aligned_cols=198 Identities=7% Similarity=-0.124 Sum_probs=128.4
Q ss_pred CeEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCe-------------EEEEECCCCe----EEEEEecCC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQ-------------LRYQDVTMGE----IVGNFRTGL 60 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~-------------i~iwd~~~~~----~~~~~~~~~ 60 (359)
+|++|| .+|+.+. ......+ ..++|+|||+.|+.++.|.. |++|++.++. ++.....+.
T Consensus 148 ~i~v~dl~tg~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~ 226 (695)
T 2bkl_A 148 VLHVIDVDSGEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDP 226 (695)
T ss_dssp EEEEEETTTCCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCT
T ss_pred EEEEEECCCCCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCC
Confidence 378899 6666430 0011122 68999999999999988776 9999998876 333333455
Q ss_pred CCeEEEEEcCCCCEEEEEeCCC----eEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe---CCCeEEEEEcCC
Q 041916 61 GRTDVMRVNPFNGVVSLGHSGG----TVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG---KECKIKIWDLRK 133 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~dg----~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~---~d~~i~iwd~~~ 133 (359)
..+..+.|||||++|+.++.++ .|.+|+..++. ...+..+...+....| ++|.+++++. .++.|.+||+.+
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC
Confidence 6788999999999888877665 67777765554 4555566666777777 5666444443 258999999987
Q ss_pred cee---eEecc----CCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 134 YEV---LQTLP----GHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 134 ~~~---~~~~~----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
+.. ...+. ..+..++|+.+. +++...++..+||.+.........+..+ ....+..++++|++..++..
T Consensus 305 ~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---~~~~v~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 305 PARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATLKGKPVRTVQLP---GVGAASNLMGLEDLDDAYYV 380 (695)
T ss_dssp CSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEETTCCEEEECCCS---SSSEECCCBSCTTCSEEEEE
T ss_pred CCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCeeEEecCC---CCeEEEEeecCCCCCEEEEE
Confidence 642 22221 236778888444 5566678877777543222333333322 12367788889988776643
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=9.8e-11 Score=106.99 Aligned_cols=208 Identities=9% Similarity=-0.042 Sum_probs=134.0
Q ss_pred eEEEeCC-CcEEEEeccCCCeEEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEE---ec-CCCCeEEEEEcCCCCE
Q 041916 2 PYIYNRD-GTELHCLKEHGAVLKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNF---RT-GLGRTDVMRVNPFNGV 74 (359)
Q Consensus 2 v~iwd~~-g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~---~~-~~~~v~~~~~sp~~~~ 74 (359)
|++||.. +.....+.....+. ++|+|++..|++++.++ .|.+|+...+.....+ .. ....+++++++|++..
T Consensus 154 I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~ 232 (409)
T 3hrp_A 154 VRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW 232 (409)
T ss_dssp EEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE
T ss_pred EEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe
Confidence 6788844 44444333332236 99999999998888765 8999998766544444 12 4466789999995555
Q ss_pred EEEEeCCCeEEEEeCCCCcceEE----EeccCCCe--EEEEEcCC-CCEEEEEeCCCeEEEEEcCCceeeEec--c----
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIK----MLCHQGPV--SALAFHPN-GHLMATSGKECKIKIWDLRKYEVLQTL--P---- 141 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~----~~~h~~~v--~~i~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~--~---- 141 (359)
|+.+..++.|..||+.++..... ..++.+.. ..++|+|+ +.++++-..++.|+.||.... ..... .
T Consensus 233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~-~~~~~g~~~~~g 311 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE-CEWFCGSATQKT 311 (409)
T ss_dssp EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECTTCCS
T ss_pred EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC-EEEEEeCCCCCC
Confidence 55577789999999987653222 11222222 38999995 555555567889999997643 11111 1
Q ss_pred -----------CCceeEEEcCCc-eEEEE--cCCcEEEEcCCCCCCccceeecccCC-----------CCcceEEEEEee
Q 041916 142 -----------GHAKTLDFSQKG-LLAVG--TGSFVQILGDFSGSHNYSRYMGHSMV-----------KGYQIGKVSFRP 196 (359)
Q Consensus 142 -----------~~i~~~~~s~~g-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~p 196 (359)
..+..++++|+| ++++. .++.|+.|++.++ .+..+.++... .-.....++++|
T Consensus 312 ~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~ 389 (409)
T 3hrp_A 312 VQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--YVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG 389 (409)
T ss_dssp CBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--EEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred cCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--EEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence 236889999999 66555 4679999996554 23334333100 012578999999
Q ss_pred CCCEEEEEcCCCeEEEE
Q 041916 197 YEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 197 ~~~~l~~~~~dg~~~i~ 213 (359)
++.++++...++.++.+
T Consensus 390 ~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 390 EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp SSEEEEEESTTCEEEEE
T ss_pred CCCEEEEECCCCeEEEE
Confidence 98766666555554443
No 207
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.37 E-value=5.1e-10 Score=102.26 Aligned_cols=190 Identities=12% Similarity=0.007 Sum_probs=132.3
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCcceEE
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWKPTTAAPLIK 97 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd~~~~~~~~~ 97 (359)
.+..|+|+|++.++++...++.|++||..++......... .... ++|+|++..|+++..++ .|.+|+...+.....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 3589999999998887777899999999888766555543 3344 99999999988888766 799999876654444
Q ss_pred E----eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe----cc---CC-ce-eEEEcCC-c-eEEEE-cCC
Q 041916 98 M----LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT----LP---GH-AK-TLDFSQK-G-LLAVG-TGS 161 (359)
Q Consensus 98 ~----~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~---~~-i~-~~~~s~~-g-l~~~~-~d~ 161 (359)
+ ......+.+++++|++..|+++..++.|..||..++..... .. +. .. .++|+|+ + ++++. ..+
T Consensus 210 ~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 210 IGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 3 21445678899999655666677789999999987653222 11 11 23 9999995 5 55554 467
Q ss_pred cEEEEcCCCCCCccceeecccCC-----------CCcceEEEEEeeCCCEEEEEc-CCCeEEEEE
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMV-----------KGYQIGKVSFRPYEDVLGIGH-SMGWSSILV 214 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~p~~~~l~~~~-~dg~~~i~~ 214 (359)
.|..|+.... ...+.++... .-.....++|+|+|.++++-+ .++.+..|.
T Consensus 290 ~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 290 SVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred EEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence 8999985322 2333332100 012478999999999777777 677666665
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.36 E-value=1.2e-09 Score=94.75 Aligned_cols=205 Identities=8% Similarity=-0.009 Sum_probs=139.9
Q ss_pred eEEEeCCCcEEE-EeccC-CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEE
Q 041916 2 PYIYNRDGTELH-CLKEH-GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSL 77 (359)
Q Consensus 2 v~iwd~~g~~~~-~l~~h-~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~s 77 (359)
|.+||..+.... .+..+ ..+.++++++++.++++...++.|..||.. ++.. .+. .....+.++++.+++.++++
T Consensus 43 v~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~ 120 (300)
T 2qc5_A 43 ISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFT 120 (300)
T ss_dssp EEEECTTSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEE
T ss_pred EEEECCCCceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEE
Confidence 566774454432 22222 345999999999988877668899999988 6643 332 23467899999999998888
Q ss_pred EeCCCeEEEEeCCCCcceEE-EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-cc---CCceeEEEcCC
Q 041916 78 GHSGGTVTMWKPTTAAPLIK-MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-LP---GHAKTLDFSQK 152 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-~~---~~i~~~~~s~~ 152 (359)
...++.|..||.. ++.... +......+.+++++++|+++++...++.|..||. ++..... .+ ..+..++++++
T Consensus 121 ~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~ 198 (300)
T 2qc5_A 121 QLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGND 198 (300)
T ss_dssp ETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred ccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCC
Confidence 7778899999987 544322 2223456899999999997766666789999998 5544332 22 35789999999
Q ss_pred c-eEEEEc-CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 153 G-LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 153 g-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
| ++++.. .+.|.+||. ++ .... +.... ....+.+++++++|.++++...++.+..+..
T Consensus 199 g~l~v~~~~~~~i~~~~~-~g-~~~~-~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 199 GALWFVEIMGNKIGRITT-TG-EISE-YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN 258 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TC-CEEE-EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred CCEEEEccCCCEEEEEcC-CC-cEEE-EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence 9 666664 568999996 43 2222 21111 2236889999999987776666666665554
No 209
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=4e-11 Score=107.68 Aligned_cols=124 Identities=9% Similarity=-0.049 Sum_probs=102.5
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
..++.++| |+.+|+++ .++.|++||+.+.........|..++.++.+.+.. +++++.||.|.+||+.++....
T Consensus 88 p~V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-- 160 (388)
T 1xip_A 88 PDVIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-- 160 (388)
T ss_dssp TTEEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE--
T ss_pred CCeeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc--
Confidence 33899999 89999998 88999999998776666677777888888877653 8889999999999999776543
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee--eEec------------cCCceeEEEcCCc
Q 041916 99 LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV--LQTL------------PGHAKTLDFSQKG 153 (359)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~------------~~~i~~~~~s~~g 153 (359)
+...|+|++|+|+| ++.|..||++++|+...+.. ..++ ..+|.++.|.+++
T Consensus 161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~ 225 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQ 225 (388)
T ss_dssp --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCC
Confidence 34579999999999 78899999999999988774 4444 2358999999999
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.36 E-value=8.3e-11 Score=115.85 Aligned_cols=196 Identities=14% Similarity=-0.000 Sum_probs=127.0
Q ss_pred eEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCCe--------------EEEEECCCCeE--EEEEe--cCCC
Q 041916 2 PYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFGQ--------------LRYQDVTMGEI--VGNFR--TGLG 61 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg~--------------i~iwd~~~~~~--~~~~~--~~~~ 61 (359)
|++|| .+|+.+.. ..+.. ...++|+|| +.|+.++.++. |++|++.++.. ...+. .+..
T Consensus 191 i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~ 268 (741)
T 1yr2_A 191 VKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPK 268 (741)
T ss_dssp EEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred EEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCe
Confidence 78999 67776543 11111 257899999 98888876654 89999987752 22233 2333
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCC--cceEEEeccCCCeEEEEEcCCCCEEEEEeCC----CeEEEEE
Q 041916 62 RTDVMRVNPFNGVVSLGHSGG-----TVTMWKPTTA--APLIKMLCHQGPVSALAFHPNGHLMATSGKE----CKIKIWD 130 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg-----~v~lwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d----~~i~iwd 130 (359)
.+..+.|||||++|+..+.++ .|.+||+.++ .+...+..+...+.... +|+|..|+..+.+ +.|.+||
T Consensus 269 ~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d 347 (741)
T 1yr2_A 269 RGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVD 347 (741)
T ss_dssp CEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence 588999999999888877544 8999999876 42555665665555554 4899998887753 4599999
Q ss_pred cCCc--eeeEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 131 LRKY--EVLQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 131 ~~~~--~~~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
+.++ .....+ ...+..++|+.+. +++...++..+||...........+..+ ....+..+.++|++..|+.
T Consensus 348 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---~~~~v~~~~~s~d~~~l~~ 423 (741)
T 1yr2_A 348 LSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP---GIGSASGLSGRPGDRHAYL 423 (741)
T ss_dssp CSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEEEECBCS---SSCEEEEEECCBTCSCEEE
T ss_pred CCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCceeeccCC---CCeEEEEeecCCCCCEEEE
Confidence 9874 222222 2335677787444 5556677766666432222333333322 1236888999999886653
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.32 E-value=3.7e-10 Score=98.88 Aligned_cols=195 Identities=9% Similarity=-0.047 Sum_probs=128.0
Q ss_pred cCCCeEEEEEecCCCEEEE-------EecCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCC-CCEEEEEeCCCeE
Q 041916 17 EHGAVLKLQFLRNHFLLAS-------INKFGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPF-NGVVSLGHSGGTV 84 (359)
Q Consensus 17 ~h~~~~~l~~s~~~~~l~s-------~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~-~~~l~sg~~dg~v 84 (359)
+...+.+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ +.++++.. .+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CCCE
Confidence 3444589999999988877 5678899999988887543221 13456899999999 66555544 4479
Q ss_pred EEEeCCCCcceEE-Eec----cCCCeEEEEEcCCCCEEEEEeCC---------------CeEEEEEcCCceeeEec--cC
Q 041916 85 TMWKPTTAAPLIK-MLC----HQGPVSALAFHPNGHLMATSGKE---------------CKIKIWDLRKYEVLQTL--PG 142 (359)
Q Consensus 85 ~lwd~~~~~~~~~-~~~----h~~~v~~i~~~~~~~~l~~~~~d---------------~~i~iwd~~~~~~~~~~--~~ 142 (359)
.+||.. ++.... ... ....+.+++++|+|+++++...+ +.|..||.. ++..... ..
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~ 172 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ 172 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC
Confidence 999988 654322 111 12347899999999887776654 578888776 5443322 23
Q ss_pred CceeEEEc----CCc--eEEEE-cCCcEEEEcCCCCCCc--cceeecccCCCC-cceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 143 HAKTLDFS----QKG--LLAVG-TGSFVQILGDFSGSHN--YSRYMGHSMVKG-YQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 143 ~i~~~~~s----~~g--l~~~~-~d~~i~i~d~~~~~~~--~~~~~~~~~~~~-~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
.+..++|+ |+| ++++. .++.|.+||+...... ...+..... .. ..+..++++++|.++++...++.+.+
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 56889999 998 44554 4689999986421111 111111111 11 25788999999988777766666666
Q ss_pred EEc
Q 041916 213 LVP 215 (359)
Q Consensus 213 ~~~ 215 (359)
|.+
T Consensus 252 ~d~ 254 (314)
T 1pjx_A 252 FGP 254 (314)
T ss_dssp ECT
T ss_pred EcC
Confidence 554
No 212
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.32 E-value=1.3e-10 Score=104.00 Aligned_cols=205 Identities=5% Similarity=-0.119 Sum_probs=133.1
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe----------cCCeEEEEECCCCeEEEEEecC-------CCCe
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN----------KFGQLRYQDVTMGEIVGNFRTG-------LGRT 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~v 63 (359)
|.++| .+++.+.++.....+ .+.|+||++++++++ .++.|.+||+.+++.+..+..+ ....
T Consensus 48 vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P 126 (368)
T 1mda_H 48 NWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV 126 (368)
T ss_dssp EEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred EEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence 67889 889999999876667 899999999888876 3689999999999999998754 1246
Q ss_pred EEEEEcCCCCEEEEEeC--CCeEEE--EeCCCCcceEEEec---------c---------CCCeEEEE------------
Q 041916 64 DVMRVNPFNGVVSLGHS--GGTVTM--WKPTTAAPLIKMLC---------H---------QGPVSALA------------ 109 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~--dg~v~l--wd~~~~~~~~~~~~---------h---------~~~v~~i~------------ 109 (359)
..++++|||++++++.. +..|.+ +|+.+ +..+.. + .+.+..+.
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 78999999999888874 467888 98865 222210 0 00000010
Q ss_pred --------------EcCCCCEEEEEeCCCeEEEEEcCCce--eeEec-------------cCCceeEEEcCCc--eEEEE
Q 041916 110 --------------FHPNGHLMATSGKECKIKIWDLRKYE--VLQTL-------------PGHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 110 --------------~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~-------------~~~i~~~~~s~~g--l~~~~ 158 (359)
..+++..++..+. +.|.+.|+.+.. .+..+ +.....++++|++ ++++.
T Consensus 204 ~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~ 282 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred EEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEe
Confidence 0233334444444 677777775432 22222 1122337899998 55433
Q ss_pred c---------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE-EEEEc-CCCeEEEEEcCC
Q 041916 159 T---------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV-LGIGH-SMGWSSILVPGS 217 (359)
Q Consensus 159 ~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~~~~-~dg~~~i~~~~~ 217 (359)
. ++.+.++|+.+. +.+..+.... ....++|+|+|+. +++.. .++.+.++...+
T Consensus 283 ~~~~~~~~~~~~~~~ViD~~t~-~vv~~i~vg~-----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 283 VEHSRSCLAAAENTSSVTASVG-QTSGPISNGH-----DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSC-CEEECCEEEE-----EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred ccccCcccccCCCEEEEECCCC-eEEEEEECCC-----CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 2 235669998776 4444444332 5889999999984 44444 467677766543
No 213
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.32 E-value=4.5e-10 Score=100.51 Aligned_cols=191 Identities=9% Similarity=-0.012 Sum_probs=131.7
Q ss_pred EEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEe
Q 041916 24 LQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWK 88 (359)
Q Consensus 24 l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd 88 (359)
....|++..+++... ++.|.++|..+++.+..+.....+ . ++++|||+.+++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 445688888877765 679999999999999999877666 4 99999999877765 367899999
Q ss_pred CCCCcceEEEeccC-------CCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEeccCCceeEEEcCCc---eEE
Q 041916 89 PTTAAPLIKMLCHQ-------GPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLA 156 (359)
Q Consensus 89 ~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g---l~~ 156 (359)
+.+.+.+..+.... ..-..++|+|||+++++++. ++.|.++|+.+++.+.+++-+- +..+.|.| +++
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~~~~~P~g~~~~~~ 194 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-CYHIFPTAPDTFFM 194 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEEEEETTEEEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-cceeecCCCceeEE
Confidence 99999888875322 13457999999999998874 6899999999999988884321 22233544 778
Q ss_pred EEcCCcEEEEcCCCCCCccceeecccCCCCcce-EEEEEe-eCCCEEEEEcCCCeEEEEEcCCC
Q 041916 157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQI-GKVSFR-PYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 157 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v-~~~~~~-p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
.+.||.+.+.++............+-.....++ ....|. ++|+++. .+.+|.+.++...+.
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSG 257 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTS
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCC
Confidence 888999999987653233221111100001122 224664 5665444 445676666665433
No 214
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.28 E-value=1.6e-09 Score=93.86 Aligned_cols=188 Identities=8% Similarity=-0.003 Sum_probs=134.9
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVG-NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
..+.+++++++|.+.++...++.|.+||.. ++... .+......+.++++.+++.++++...++.|..||.. +.. ..
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~ 96 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TE 96 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EE
Confidence 345999999999988877778999999988 65443 222334678999999999988877778899999987 543 33
Q ss_pred Ee--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE-ecc---CCceeEEEcCCc-eEEEEc-CCcEEEEcCC
Q 041916 98 ML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ-TLP---GHAKTLDFSQKG-LLAVGT-GSFVQILGDF 169 (359)
Q Consensus 98 ~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~---~~i~~~~~s~~g-l~~~~~-d~~i~i~d~~ 169 (359)
+. .....+.+++++++|.++++...++.|..||.. ++... .+. ..+.+++++++| ++++.. ++.|..||.
T Consensus 97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~- 174 (300)
T 2qc5_A 97 YPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN- 174 (300)
T ss_dssp EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-
T ss_pred ecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-
Confidence 32 234568999999999988877778899999987 55432 222 357899999999 666654 678999996
Q ss_pred CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
++ ... .+... . ....+.++++++++.++++....+.+.++..
T Consensus 175 ~g-~~~-~~~~~-~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 175 TG-KLE-EYPLP-T-NAAAPVGITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp TC-CEE-EEECS-S-TTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred CC-cEE-EeeCC-C-CCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence 44 222 22211 1 2236889999999987777666665555554
No 215
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.26 E-value=1e-09 Score=93.23 Aligned_cols=198 Identities=8% Similarity=0.048 Sum_probs=133.0
Q ss_pred CcEEEEeccCCC--eEEEEEecCCCEEEEEec--CCeEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEeCCCe
Q 041916 9 GTELHCLKEHGA--VLKLQFLRNHFLLASINK--FGQLRYQDVTMGEIVGNFRTGLG-RTDVMRVNPFNGVVSLGHSGGT 83 (359)
Q Consensus 9 g~~~~~l~~h~~--~~~l~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~sg~~dg~ 83 (359)
.+.+.++..... +..++|+|++.++++.+. ++.|.++|+.+++.+..+..... ....+++.. +.+.++.-.++.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~ 87 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCE
Confidence 345666754433 389999998765555543 67999999999999988764322 233555553 345555567899
Q ss_pred EEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-----C---CceeEEEcCCc-e
Q 041916 84 VTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-----G---HAKTLDFSQKG-L 154 (359)
Q Consensus 84 v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-----~---~i~~~~~s~~g-l 154 (359)
+.++|..+.+.+.++...... ...+++||..++++..++.|.++|..+.+.+..+. . .++.+.|. +| +
T Consensus 88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999888888633111 23456688888877788999999999988877762 1 25678888 67 6
Q ss_pred EEEE-cCCcEEEEcCCCCCCccceeeccc---------CCCCcceEEEEEeeCCCEEE-EEcCCCeEE
Q 041916 155 LAVG-TGSFVQILGDFSGSHNYSRYMGHS---------MVKGYQIGKVSFRPYEDVLG-IGHSMGWSS 211 (359)
Q Consensus 155 ~~~~-~d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~p~~~~l~-~~~~dg~~~ 211 (359)
++.. .++.|.+.|+.++ .....+.... .......+.++|+|+++.++ ++...+.+.
T Consensus 165 yvn~~~~~~V~vID~~tg-~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~ 231 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDG-TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLF 231 (266)
T ss_dssp EEEETTSSEEEEEETTTC-CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEE
T ss_pred EEecCCCCeEEEEECCCC-cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEE
Confidence 6655 4689999998877 4444443210 00123568999999987443 333344333
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=3.9e-09 Score=91.97 Aligned_cols=193 Identities=10% Similarity=-0.022 Sum_probs=121.8
Q ss_pred ccCCCe-EEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916 16 KEHGAV-LKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA 93 (359)
Q Consensus 16 ~~h~~~-~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~ 93 (359)
..+... -+..|+|+ +.++++...++.|..||..++.. ..+. ....+.+++++|+|.++++ . ++.|.+||+.+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 333344 89999996 45666666789999999988765 3333 3467999999999996554 3 5679999998775
Q ss_pred ceEEEec----cCCCeEEEEEcCCCCEEEEEeC-----------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--e
Q 041916 94 PLIKMLC----HQGPVSALAFHPNGHLMATSGK-----------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--L 154 (359)
Q Consensus 94 ~~~~~~~----h~~~v~~i~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l 154 (359)
....... ....+++++++|+|+++++... .+.|..+|.. +...... ......++|+|++ +
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTTSCEE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCCCCEE
Confidence 4332221 1234789999999997665432 1344444443 3332222 2346889999999 4
Q ss_pred EEEE-cCCcEEEEcCC--CCCCcc--ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 155 LAVG-TGSFVQILGDF--SGSHNY--SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 155 ~~~~-~d~~i~i~d~~--~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+++. .++.|.+|++. ++ ... ..+..... ....+..++++++|.+.++....+.+..|.+
T Consensus 164 yv~~~~~~~i~~~~~d~~~G-~~~~~~~~~~~~~-~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTG-QISNRRSVYKLEK-EEQIPDGMCIDAEGKLWVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTC-CEEEEEEEEECCG-GGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred EEecCCCCcEEEEeccCCCC-cccCcEEEEECCC-CCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence 4444 46889999853 33 211 11211110 1125788999999987766666665555544
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.25 E-value=3.7e-09 Score=95.25 Aligned_cols=185 Identities=9% Similarity=-0.088 Sum_probs=126.2
Q ss_pred EEecCCCEEEEEec--CC---eEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeC
Q 041916 25 QFLRNHFLLASINK--FG---QLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWKP 89 (359)
Q Consensus 25 ~~s~~~~~l~s~~~--dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd~ 89 (359)
...|++.+++++.. .. .|.++|..+++.+..+.....+ .++++|||+.++++. .++.|.+||+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 34467777777653 22 8899999999998888765544 999999999988875 3678999999
Q ss_pred CCCcceEEEecc-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEe-ccCCceeEEEcCCc---eEE
Q 041916 90 TTAAPLIKMLCH-------QGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQT-LPGHAKTLDFSQKG---LLA 156 (359)
Q Consensus 90 ~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~-~~~~i~~~~~s~~g---l~~ 156 (359)
.+.+.+..+... ...-..++|+|||++|++++. ++.|.++| .+++.+.. ++.+ .++.+.|++ +++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~ 182 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYL 182 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEE
Confidence 988877766432 122457999999999999874 47899999 99998888 6432 235555665 677
Q ss_pred EEcCCcEEEEcCCCCCCccceeec---ccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 157 VGTGSFVQILGDFSGSHNYSRYMG---HSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 157 ~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
.+.||.+.++|. ++ ........ ... ...-.....|.+++..++..+..+.+.++...
T Consensus 183 ~~~dg~~~~vd~-~g-~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~ 242 (373)
T 2mad_H 183 LCAQGGLAKTDH-AG-GAAGAGLVGAMLTA-AQNLLTQPAQANKSGRIVWPVYSGKILQADIS 242 (373)
T ss_pred EcCCCCEEEEEC-CC-cEEEEEeccccccC-CcceeecceeEecCCEEEEEcCCceEEEEecc
Confidence 788999999997 55 23211110 000 11112345677776655544456655555543
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.24 E-value=2.1e-09 Score=97.03 Aligned_cols=204 Identities=11% Similarity=0.018 Sum_probs=135.1
Q ss_pred CeEEEe-CCC----cEEEEec--------cCCCeEEEEEecCCCEEEEEecC------CeEEEEECCCCeEEEEEecCCC
Q 041916 1 YPYIYN-RDG----TELHCLK--------EHGAVLKLQFLRNHFLLASINKF------GQLRYQDVTMGEIVGNFRTGLG 61 (359)
Q Consensus 1 ~v~iwd-~~g----~~~~~l~--------~h~~~~~l~~s~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~ 61 (359)
.|+|+| .+. +.+.++. +-..+..+..+|+| +++++..+ |.|.++|..+++.+..+.....
T Consensus 107 ~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~ 185 (462)
T 2ece_A 107 RIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG 185 (462)
T ss_dssp CEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT
T ss_pred eEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC
Confidence 478888 444 5566663 21234778899999 66666555 7899999999999998873322
Q ss_pred C---eEEEEEcCCCCEEEEEe-------------------CCCeEEEEeCCCCcceEEEecc-C-CCeEEEEE--cCCCC
Q 041916 62 R---TDVMRVNPFNGVVSLGH-------------------SGGTVTMWKPTTAAPLIKMLCH-Q-GPVSALAF--HPNGH 115 (359)
Q Consensus 62 ~---v~~~~~sp~~~~l~sg~-------------------~dg~v~lwd~~~~~~~~~~~~h-~-~~v~~i~~--~~~~~ 115 (359)
+ -..+.|+|+++.+++.. .+..|.+||+.+++.+.++... . .....|.| +|+++
T Consensus 186 ~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~ 265 (462)
T 2ece_A 186 DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKL 265 (462)
T ss_dssp TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCC
T ss_pred CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCC
Confidence 2 34588899999888874 3689999999998877777642 1 23345656 99999
Q ss_pred EEEEEe------CCCeEEEEEcCCce--eeEe-----------c----------cCCceeEEEcCCc--eEEEEc-CCcE
Q 041916 116 LMATSG------KECKIKIWDLRKYE--VLQT-----------L----------PGHAKTLDFSQKG--LLAVGT-GSFV 163 (359)
Q Consensus 116 ~l~~~~------~d~~i~iwd~~~~~--~~~~-----------~----------~~~i~~~~~s~~g--l~~~~~-d~~i 163 (359)
++++++ .+++|.+|....+. .... + ...+..|.+|||| ++++.. .+.|
T Consensus 266 ~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~V 345 (462)
T 2ece_A 266 MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEV 345 (462)
T ss_dssp EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEE
T ss_pred EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEE
Confidence 988777 45688776554332 1111 1 1346889999999 555553 5899
Q ss_pred EEEcCCCCCC--ccceeeccc---------C-CCCcceEEEEEeeCCCEEEEEc
Q 041916 164 QILGDFSGSH--NYSRYMGHS---------M-VKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 164 ~i~d~~~~~~--~~~~~~~~~---------~-~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.+||+..... .+..+.... + .-......++++|+|++|+++.
T Consensus 346 avfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 346 RQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999753321 111111110 0 0001257799999999988877
No 219
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=116.48 Aligned_cols=178 Identities=12% Similarity=-0.042 Sum_probs=99.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCC-CeE-
Q 041916 29 NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQG-PVS- 106 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~-~v~- 106 (359)
++..+++++.||.|..||..+|+.+..+.. +.+.+..+.+++..+++++.||.|+.||..+++.+..+..+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 567899999999999999999999998886 5565555667777888888999999999999988776653311 110
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCccceeecccCC
Q 041916 107 ALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHNYSRYMGHSMV 184 (359)
Q Consensus 107 ~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 184 (359)
+..+. ++..+++++.|+.|+.||..+|+.+..+...- ...++|++ +++++.++.|..||..++. ....+...
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~-~~W~~~~~--- 159 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRE-LRWNATYF--- 159 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSS-CCCEEEEE---
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCC-EEEeEecc---
Confidence 11111 34567888889999999999999887773321 23455665 7778889999999987773 33332221
Q ss_pred CCcceEEEEEeeCC---CEEEEEcCCCeEEEEEcCC
Q 041916 185 KGYQIGKVSFRPYE---DVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 185 ~~~~v~~~~~~p~~---~~l~~~~~dg~~~i~~~~~ 217 (359)
.....+++++. ..+++++.+|.+..|...+
T Consensus 160 ---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 160 ---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp ---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred ---cccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 11222233322 4566677777666655443
No 220
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.22 E-value=3.2e-09 Score=94.57 Aligned_cols=183 Identities=8% Similarity=-0.018 Sum_probs=121.3
Q ss_pred CeEEEEEecCCCEEEEEec-----CCeEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCE-EEEEe---CCCeE
Q 041916 20 AVLKLQFLRNHFLLASINK-----FGQLRYQDVTMGEIVGNFRTG------LGRTDVMRVNPFNGV-VSLGH---SGGTV 84 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~-l~sg~---~dg~v 84 (359)
.+.+++|+++++++++-.. ++.|.+||+.+++.+..+..+ ...++.++++|++.. +++.. .++.|
T Consensus 68 ~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i 147 (343)
T 2qe8_A 68 TVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAAL 147 (343)
T ss_dssp CEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEE
T ss_pred EeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeE
Confidence 3599999999886665433 579999999999977776532 235689999986544 45544 67899
Q ss_pred EEEeCCCCcceEEEeccC-----------------------------CCeEEEEEcCCCCEEEEEeCCC-eEEEEEcC--
Q 041916 85 TMWKPTTAAPLIKMLCHQ-----------------------------GPVSALAFHPNGHLMATSGKEC-KIKIWDLR-- 132 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~h~-----------------------------~~v~~i~~~~~~~~l~~~~~d~-~i~iwd~~-- 132 (359)
.+||+.+++....+..|. ..+..|+|+|+|+.|+++..++ .|..++..
T Consensus 148 ~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~ 227 (343)
T 2qe8_A 148 IRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADL 227 (343)
T ss_dssp EEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHH
T ss_pred EEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHh
Confidence 999998776554443321 2358899999999998887665 55555532
Q ss_pred -Cce-----e---eEec--cCCceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916 133 -KYE-----V---LQTL--PGHAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 133 -~~~-----~---~~~~--~~~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
.+. . +..+ .+.+..++++++| ++++. .++.|.+||..++ . ...+.... ....+.+++|.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G-~-~~~~~~~~--~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR-A-YKLLVTDE--KLSWTDSFNFGSDGY 303 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT-E-EEEEEECG--GGSCEEEEEECTTSC
T ss_pred cCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC-C-EEEEEECC--ceecCCeeEECCCCc
Confidence 110 0 1111 2356789999999 55554 5689999996344 2 22222211 122588999999887
Q ss_pred EEEEEcC
Q 041916 200 VLGIGHS 206 (359)
Q Consensus 200 ~l~~~~~ 206 (359)
++++.+.
T Consensus 304 l~v~~~~ 310 (343)
T 2qe8_A 304 LYFDCNQ 310 (343)
T ss_dssp EEEEECC
T ss_pred EEEEeCc
Confidence 6655443
No 221
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.7e-09 Score=94.63 Aligned_cols=183 Identities=11% Similarity=-0.013 Sum_probs=120.4
Q ss_pred EEEeccCCC-eEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 041916 12 LHCLKEHGA-VLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP 89 (359)
Q Consensus 12 ~~~l~~h~~-~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~ 89 (359)
+..+..+.. ..+..|+|+++ ++++...++.|..|+. ++. ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 334444434 48999999998 6667777899999998 455 4555566678899999999998777767788999998
Q ss_pred CCCcceEEEecc-----CCCeEEEEEcCCCCEEEE----EeC-------------CCeEEEEEcCCceeeEec-cCCcee
Q 041916 90 TTAAPLIKMLCH-----QGPVSALAFHPNGHLMAT----SGK-------------ECKIKIWDLRKYEVLQTL-PGHAKT 146 (359)
Q Consensus 90 ~~~~~~~~~~~h-----~~~v~~i~~~~~~~~l~~----~~~-------------d~~i~iwd~~~~~~~~~~-~~~i~~ 146 (359)
. +.. ..+..+ ...+++++++|+|+++++ |.. .+.|..||..+++..... ......
T Consensus 115 ~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g 192 (305)
T 3dr2_A 115 D-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG 192 (305)
T ss_dssp T-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred C-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence 6 543 222211 134678999999998886 332 256888888666543222 234578
Q ss_pred EEEcCCc--eEEEEcC------CcEEEEcCCCCCCcc--ceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 147 LDFSQKG--LLAVGTG------SFVQILGDFSGSHNY--SRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 147 ~~~s~~g--l~~~~~d------~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
++|+|+| ++++... +.|.+|++..+. .. ..+... .......++++++|.+.+
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~---~~~~pdgi~~d~~G~lwv 254 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV---PDGLPDGFCVDRGGWLWS 254 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC---SSSCCCSEEECTTSCEEE
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC---CCCCCCeEEECCCCCEEE
Confidence 9999999 5555554 689999865432 11 111110 112345678888887433
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.22 E-value=2e-12 Score=116.59 Aligned_cols=164 Identities=14% Similarity=0.063 Sum_probs=94.7
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eE-EEEEcCCCCEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TD-VMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~-~~~~sp~~~~l~sg 78 (359)
|+.|| .+|+++..+.. ..+.+..+.+++..+++++.||.|+.||..+|+.+..+..+... +. +..+. .+..+++|
T Consensus 21 v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g 98 (369)
T 2hz6_A 21 LHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMG 98 (369)
T ss_dssp EEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCC
T ss_pred EEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEE
Confidence 78899 89999988877 44455556667777888889999999999999887766543211 10 01111 34567788
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCceeEEEcCC----c
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHAKTLDFSQK----G 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i~~~~~s~~----g 153 (359)
+.||.|..||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+. ......+++++ +
T Consensus 99 ~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~ 174 (369)
T 2hz6_A 99 KKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKM 174 (369)
T ss_dssp EEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCC
T ss_pred eCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccc
Confidence 899999999999999887776543 24556788899999999999999999998766552 12233344442 5
Q ss_pred -eEEEEcCCcEEEEcCCCC
Q 041916 154 -LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~ 171 (359)
+++++.+|.|..||..++
T Consensus 175 ~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 175 SHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CEEEEETSCEEEEECTTTC
T ss_pred eEEEECCCCEEEEEECCCC
Confidence 788889999999998777
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.18 E-value=1.1e-08 Score=90.36 Aligned_cols=186 Identities=9% Similarity=-0.081 Sum_probs=119.5
Q ss_pred EEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEec
Q 041916 22 LKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 22 ~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~ 100 (359)
.+..|+|++ .++++...++.|..||..++... .+. ....+.+++|+|+|.++++. .+ .|.+||+.+++.......
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~ 127 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL 127 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC
Confidence 788999974 55666667889999999887643 333 34679999999999877754 44 499999987764322211
Q ss_pred ---c-CCCeEEEEEcCCCCEEEEEeC------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE-cCCcEEE
Q 041916 101 ---H-QGPVSALAFHPNGHLMATSGK------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQI 165 (359)
Q Consensus 101 ---h-~~~v~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i 165 (359)
. ...+++++++|+|+++++... .+.|..+| +++..... ......++|+|+| ++.+. .++.|.+
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~ 205 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR 205 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence 1 135889999999997665542 24666666 45433222 2346789999999 44444 4589999
Q ss_pred EcCC--CC-CCc-cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 166 LGDF--SG-SHN-YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 166 ~d~~--~~-~~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
|++. ++ ... ...+..... ....+..++++++|.++++...++.+..|.
T Consensus 206 ~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 206 VPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYD 257 (326)
T ss_dssp EEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred EEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEEC
Confidence 9964 33 111 112211110 122567889999987766655555444444
No 224
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=2.4e-09 Score=95.37 Aligned_cols=192 Identities=9% Similarity=0.000 Sum_probs=125.5
Q ss_pred CCeEEEEEecCCCEEEEEe--cCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEcCCCCEEEEEeC-----CCeE
Q 041916 19 GAVLKLQFLRNHFLLASIN--KFGQLRYQDVTMGEIVGNFR-------TGLGRTDVMRVNPFNGVVSLGHS-----GGTV 84 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~l~sg~~-----dg~v 84 (359)
..+..++++|+|+++++.. .++.++||.+.+++. ..+. .+...+.+++++|+++++++... ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 4569999999999988864 234245555445653 3332 24467899999999887776544 5789
Q ss_pred EEEeCCCCcceEEEecc------CCCeEEEEEcCCCCEEE-EEe---CCCeEEEEEcCCceeeEecc-------------
Q 041916 85 TMWKPTTAAPLIKMLCH------QGPVSALAFHPNGHLMA-TSG---KECKIKIWDLRKYEVLQTLP------------- 141 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~h------~~~v~~i~~~~~~~~l~-~~~---~d~~i~iwd~~~~~~~~~~~------------- 141 (359)
.+||+.+++.+..+... ...+..++++|++..++ +.. .++.|.+||+.+++....+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999988876666432 23468999998655554 444 57899999998776544331
Q ss_pred -------------------CCceeEEEcCCc--eEEEEcCC-cEEEEcCCC--CCCc-----cc--eeecccCCCCcceE
Q 041916 142 -------------------GHAKTLDFSQKG--LLAVGTGS-FVQILGDFS--GSHN-----YS--RYMGHSMVKGYQIG 190 (359)
Q Consensus 142 -------------------~~i~~~~~s~~g--l~~~~~d~-~i~i~d~~~--~~~~-----~~--~~~~~~~~~~~~v~ 190 (359)
..+..|+|+|+| ++++...+ .|..++... .... .. ...++.. ...
T Consensus 176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g----~pd 251 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKP----ICD 251 (343)
T ss_dssp ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECC----SCS
T ss_pred ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCC----CCc
Confidence 124779999999 55665554 566555211 1000 00 1112211 456
Q ss_pred EEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 191 KVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 191 ~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
.++++++|.++++...++.+.+|.+
T Consensus 252 gia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 252 GISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CEEECTTCCEEEEEGGGTEEEEEET
T ss_pred eEEECCCCCEEEEccCCCeEEEEEC
Confidence 7899999988888877777777775
No 225
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.18 E-value=4.2e-09 Score=95.11 Aligned_cols=186 Identities=14% Similarity=0.128 Sum_probs=121.7
Q ss_pred cCCCEEEE-EecCCeEEEEECCCC----eEEEEEe-------cCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeC
Q 041916 28 RNHFLLAS-INKFGQLRYQDVTMG----EIVGNFR-------TGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKP 89 (359)
Q Consensus 28 ~~~~~l~s-~~~dg~i~iwd~~~~----~~~~~~~-------~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~ 89 (359)
+++++|+. +..++.|.++|+.+. +....+. ......+.+..+|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 67766654 556889999999765 6666663 122356778889999 77766555 78999999
Q ss_pred CCCcceEEEeccCC---CeEEEEEcCCCCEEEEEe-------------------CCCeEEEEEcCCceeeEeccC-----
Q 041916 90 TTAAPLIKMLCHQG---PVSALAFHPNGHLMATSG-------------------KECKIKIWDLRKYEVLQTLPG----- 142 (359)
Q Consensus 90 ~~~~~~~~~~~h~~---~v~~i~~~~~~~~l~~~~-------------------~d~~i~iwd~~~~~~~~~~~~----- 142 (359)
.+.+.+.++....+ .-..+.|+|+++.|++.. .+.+|.+||+.+++.+.++.-
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999888863222 234688999999998885 368999999999888877732
Q ss_pred CceeEEE--cCCc---eEEEE-----cCCcEEEEcCCCCC-Ccccee--ecc----cC---C-----CCcceEEEEEeeC
Q 041916 143 HAKTLDF--SQKG---LLAVG-----TGSFVQILGDFSGS-HNYSRY--MGH----SM---V-----KGYQIGKVSFRPY 197 (359)
Q Consensus 143 ~i~~~~~--s~~g---l~~~~-----~d~~i~i~d~~~~~-~~~~~~--~~~----~~---~-----~~~~v~~~~~~p~ 197 (359)
....+.| +|+| ++++. .+++|.+|....+. ...+.+ ... .. . .+.....+.++||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 2345555 9999 44444 56788776532210 000000 000 00 0 0125788999999
Q ss_pred CCEEEEEcC-CCeEEEEE
Q 041916 198 EDVLGIGHS-MGWSSILV 214 (359)
Q Consensus 198 ~~~l~~~~~-dg~~~i~~ 214 (359)
|++|.++.. .+.+.++.
T Consensus 332 GrfLYVSnrg~d~Vavfd 349 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYD 349 (462)
T ss_dssp SCEEEEEETTTTEEEEEE
T ss_pred CCEEEEEeCCCCEEEEEE
Confidence 998766554 33444444
No 226
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.17 E-value=9.7e-09 Score=86.22 Aligned_cols=186 Identities=11% Similarity=0.125 Sum_probs=126.8
Q ss_pred EEEEeccCCCe--EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEEecCCCCe-EEEEEcCCCCEEEEEeCCCeEE
Q 041916 11 ELHCLKEHGAV--LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNFRTGLGRT-DVMRVNPFNGVVSLGHSGGTVT 85 (359)
Q Consensus 11 ~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~sg~~dg~v~ 85 (359)
.+.++.....+ ..+.|+ ++.++.+.+.+| .|+++|+.+|+.+..+....... -.++... +.+.++...++.+.
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g-~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK-DKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC-CEEEEEEeeCCEEE
Confidence 45566444444 889998 677777777766 99999999999998887543321 2344432 24444455689999
Q ss_pred EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--------CCceeEEEcCCc-eEE
Q 041916 86 MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--------GHAKTLDFSQKG-LLA 156 (359)
Q Consensus 86 lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~i~~~~~s~~g-l~~ 156 (359)
+||..+.+.+.++.... ....+++|+..|+.+..++.|.++|..+.+.+..+. ..++.+.|. +| +++
T Consensus 111 v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 111 VWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 99999999998887432 223344677777777778899999999988877761 123567787 66 666
Q ss_pred EE-cCCcEEEEcCCCCCCccceeeccc--------CCCCcceEEEEEeeCCCEEEE
Q 041916 157 VG-TGSFVQILGDFSGSHNYSRYMGHS--------MVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 157 ~~-~d~~i~i~d~~~~~~~~~~~~~~~--------~~~~~~v~~~~~~p~~~~l~~ 203 (359)
.. .++.|.+.|..++ .....+.... .......+.|+|+|+++.|.+
T Consensus 187 n~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 187 NVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp EETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred EEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 66 4689999998777 4444333211 012335799999999875433
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.17 E-value=1.2e-09 Score=106.78 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=118.0
Q ss_pred EEEEEecCCCEEEEEe-----cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCC-------------e
Q 041916 22 LKLQFLRNHFLLASIN-----KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGG-------------T 83 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg-------------~ 83 (359)
..++|||||++||.+. ....|++||+.+|+.+.... +......++|+ |++.|+.++.+. .
T Consensus 132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 7889999999888533 23579999999998654311 11113578899 999998888774 3
Q ss_pred EEEEeCCCCcc--eEEEe--c-cCCCeEEEEEcCCCCEEEEEeC----CCeEEEEEcCCce-eeEec---cCCceeEEEc
Q 041916 84 VTMWKPTTAAP--LIKML--C-HQGPVSALAFHPNGHLMATSGK----ECKIKIWDLRKYE-VLQTL---PGHAKTLDFS 150 (359)
Q Consensus 84 v~lwd~~~~~~--~~~~~--~-h~~~v~~i~~~~~~~~l~~~~~----d~~i~iwd~~~~~-~~~~~---~~~i~~~~~s 150 (359)
|++|++.++.. ...+. . |...+.++.|+|||++|+.... +..|+++|+.++. ....+ ....... |+
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~ 288 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD 288 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee
Confidence 99999987653 22222 3 4456788999999998765432 2589999998763 23333 2223333 66
Q ss_pred CCc--eEEEEc-C---CcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcC-CCeEEE
Q 041916 151 QKG--LLAVGT-G---SFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS-MGWSSI 212 (359)
Q Consensus 151 ~~g--l~~~~~-d---~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~-dg~~~i 212 (359)
++| ++..+. + +.|..+|+.++.. ....+..+.. .+. .|+++++.|+.... +|...+
T Consensus 289 ~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~~~--~~s~~g~~lv~~~~~~g~~~l 352 (693)
T 3iuj_A 289 NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ----QVL--TVHSGSGYLFAEYMVDATARV 352 (693)
T ss_dssp EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS----SCE--EEEEETTEEEEEEEETTEEEE
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC----CEE--EEEEECCEEEEEEEECCeeEE
Confidence 666 544443 2 5799999766532 1244555532 333 89999998776654 443333
No 228
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=3.1e-09 Score=103.78 Aligned_cols=197 Identities=9% Similarity=-0.002 Sum_probs=124.3
Q ss_pred CeEEEe-CCCcEEEEeccCCC-eEEEEEecCCCEEEEEecCC-------------eEEEEECCCCe----EEEEEec-CC
Q 041916 1 YPYIYN-RDGTELHCLKEHGA-VLKLQFLRNHFLLASINKFG-------------QLRYQDVTMGE----IVGNFRT-GL 60 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~-~~~l~~s~~~~~l~s~~~dg-------------~i~iwd~~~~~----~~~~~~~-~~ 60 (359)
+|+||| .+|+.+.. ..+.. ...++|+ |++.|+.++.+. .|++|++.++. ++..... |.
T Consensus 156 ~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~ 233 (693)
T 3iuj_A 156 EIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQH 233 (693)
T ss_dssp EEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGC
T ss_pred EEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCC
Confidence 378899 77776543 11111 2578999 999998887774 39999998764 2322233 44
Q ss_pred CCeEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCc-ceEEEeccCCCeEEEEEcCCCCEEEEEe-CC---CeEEEEEc
Q 041916 61 GRTDVMRVNPFNGVVSLGHS----GGTVTMWKPTTAA-PLIKMLCHQGPVSALAFHPNGHLMATSG-KE---CKIKIWDL 131 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~----dg~v~lwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d---~~i~iwd~ 131 (359)
..+..+.|+|||++|+.... +..|.+||+.++. ....+..+.+..... |+++|..|+..+ .+ +.|..+|+
T Consensus 234 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~ 312 (693)
T 3iuj_A 234 HRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA 312 (693)
T ss_dssp CSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred eEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 45788999999998765432 3589999998764 455666666666655 667776665544 33 68999999
Q ss_pred CCcee--eEec---cCCceeEEEcCCc--eEEEE-cCC--cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 132 RKYEV--LQTL---PGHAKTLDFSQKG--LLAVG-TGS--FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 132 ~~~~~--~~~~---~~~i~~~~~s~~g--l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
.++.. ...+ ...+. .|++++ ++... .++ .|.+|++..+ ....+... ....+..+.++|++..|
T Consensus 313 ~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p---~~~~~~~~~~~~d~~~l 385 (693)
T 3iuj_A 313 ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK--RVREVALP---GLGSVSGFNGKHDDPAL 385 (693)
T ss_dssp TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC--EEEEECCS---SSSEEEECCCCTTCSCE
T ss_pred CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC--eeEEeecC---CCceEEeeecCCCCCEE
Confidence 87643 2233 22233 888887 54444 344 7899986533 22222211 11257777888888766
Q ss_pred EEEcCC
Q 041916 202 GIGHSM 207 (359)
Q Consensus 202 ~~~~~d 207 (359)
+....+
T Consensus 386 ~~~~ss 391 (693)
T 3iuj_A 386 YFGFEN 391 (693)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 655433
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.15 E-value=4.5e-09 Score=95.62 Aligned_cols=185 Identities=11% Similarity=-0.040 Sum_probs=128.9
Q ss_pred cCCCEEEEEec-C----CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 041916 28 RNHFLLASINK-F----GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----------SGGTVTMWKPTTA 92 (359)
Q Consensus 28 ~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----------~dg~v~lwd~~~~ 92 (359)
|++..++++.. + +.|.++|+.+++.+..+.....+ .++++||++.++++. .++.|.++|+.++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46666665554 2 69999999999999999877666 899999999887775 4678999999999
Q ss_pred cceEEEecc-------CCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEeccCCceeEEEcCCc---eEEEEcC
Q 041916 93 APLIKMLCH-------QGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG---LLAVGTG 160 (359)
Q Consensus 93 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g---l~~~~~d 160 (359)
+.+..+... ......++|+|||+++++++. ++.|.++|+.+++.+..++-+- +....|+| +++.+.|
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-CYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEEEEEETTEEEEEETT
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-ceeeccCCCcEEEEEcCC
Confidence 988777532 123457899999999999874 5799999999999988874221 23445555 6777888
Q ss_pred CcEEEEcCCCCCCccceee-cccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 161 SFVQILGDFSGSHNYSRYM-GHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 161 ~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
|.+.+.++.++ ....... ............+.|.+++..++..+..|.+.++...
T Consensus 239 G~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~ 294 (426)
T 3c75_H 239 GSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLT 294 (426)
T ss_dssp SSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEEC
T ss_pred CCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEecc
Confidence 88888887333 3221110 0000001112345678888877777777766666653
No 230
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.12 E-value=6.5e-09 Score=101.19 Aligned_cols=197 Identities=14% Similarity=0.091 Sum_probs=132.5
Q ss_pred eEEEe-CCCcEEEEeccC-------------------------------CCe-EEEEEecCCCEEEEEecCC--------
Q 041916 2 PYIYN-RDGTELHCLKEH-------------------------------GAV-LKLQFLRNHFLLASINKFG-------- 40 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-------------------------------~~~-~~l~~s~~~~~l~s~~~dg-------- 40 (359)
|+.|| .+|+++..+... ..+ ..++++|+..+++.++.++
T Consensus 185 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~ 264 (689)
T 1yiq_A 185 VTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWR 264 (689)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred EEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCC
Confidence 67889 899988776521 112 3688999888999888776
Q ss_pred -----------eEEEEECCCCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCcceEE
Q 041916 41 -----------QLRYQDVTMGEIVGNFRT--GL-------GRTDVMRVNPFNG---VVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 41 -----------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
.|..+|..+|+.+..++. |. .++.......+|. .++.++.+|.++++|..+++.+..
T Consensus 265 ~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 265 SQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp HTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 399999999999988875 21 1222222223554 788899999999999999988743
Q ss_pred EeccC-C--------------------------------------CeEEEEEcCCCCEEEEEeC----------------
Q 041916 98 MLCHQ-G--------------------------------------PVSALAFHPNGHLMATSGK---------------- 122 (359)
Q Consensus 98 ~~~h~-~--------------------------------------~v~~i~~~~~~~~l~~~~~---------------- 122 (359)
..... . .-..++|+|+..++++.+.
T Consensus 345 ~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~ 424 (689)
T 1yiq_A 345 KGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRN 424 (689)
T ss_dssp EESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCC
T ss_pred ccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccc
Confidence 32110 0 0113788998888777532
Q ss_pred -----------------------------CCeEEEEEcCCceeeEecc--CCceeEEEcCC-c-eEEEEcCCcEEEEcCC
Q 041916 123 -----------------------------ECKIKIWDLRKYEVLQTLP--GHAKTLDFSQK-G-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 123 -----------------------------d~~i~iwd~~~~~~~~~~~--~~i~~~~~s~~-g-l~~~~~d~~i~i~d~~ 169 (359)
+|.|..||+.+++.+..++ .+.....++.. + +++++.|+.|+.||..
T Consensus 425 ~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~ 504 (689)
T 1yiq_A 425 PFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAAD 504 (689)
T ss_dssp SCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred ccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECC
Confidence 3789999999999887773 33333344444 4 6777789999999988
Q ss_pred CCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
++ +.+..+..... ..-.-+.|..+|+.++
T Consensus 505 tG-~~lw~~~~~~~---~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 505 TG-EKLWEQPAASG---VMAAPVTYSVDGEQYV 533 (689)
T ss_dssp TC-CEEEEEECSSC---CCSCCEEEEETTEEEE
T ss_pred CC-ccceeeeCCCC---cccCceEEEECCEEEE
Confidence 87 44444443321 1223466788887443
No 231
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.09 E-value=1e-07 Score=79.32 Aligned_cols=184 Identities=15% Similarity=0.138 Sum_probs=125.4
Q ss_pred EEEEeccCCCe--EEEEEecCCCEEEEEecC--CeEEEEECCCCeEEEEEecCCCCe-EEEEEcCCCCEEEEEeCCCeEE
Q 041916 11 ELHCLKEHGAV--LKLQFLRNHFLLASINKF--GQLRYQDVTMGEIVGNFRTGLGRT-DVMRVNPFNGVVSLGHSGGTVT 85 (359)
Q Consensus 11 ~~~~l~~h~~~--~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~v-~~~~~sp~~~~l~sg~~dg~v~ 85 (359)
.+.++.+.... ..+.|++ +.++.+.+.+ +.|+.+|+.+|+.+..+....... ..++... +.++.....++.+.
T Consensus 11 v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 11 VVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEE
T ss_pred EEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEE
Confidence 45666433333 6999987 5666666665 499999999999998887543321 2344432 34555566789999
Q ss_pred EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--------CCceeEEEcCCc-eEE
Q 041916 86 MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--------GHAKTLDFSQKG-LLA 156 (359)
Q Consensus 86 lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~i~~~~~s~~g-l~~ 156 (359)
+||..+.+.+.++...... ..++ +++..|+++..++.|.++|..+.+.+..+. ..++.+.|. +| +++
T Consensus 89 v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 89 VYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp EEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 9999999999888743222 3444 567777777778999999999988877762 234667776 55 666
Q ss_pred EE-cCCcEEEEcCCCCCCccceeecccC---------CCCcceEEEEEeeCCCEE
Q 041916 157 VG-TGSFVQILGDFSGSHNYSRYMGHSM---------VKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 157 ~~-~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~p~~~~l 201 (359)
.. .++.|.+.|..++ .....+..... ......+.|+|+|+++.|
T Consensus 165 nvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 165 NVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp EETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred EECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 66 4689999998877 44443332110 123467999999988743
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.09 E-value=4e-09 Score=98.50 Aligned_cols=202 Identities=8% Similarity=-0.059 Sum_probs=137.4
Q ss_pred eEEEe-CCCcEEE--EeccCCCeEEEEE-e-cCCCEEEEEe------------------cCCeEEEEECCCCeEEEEEec
Q 041916 2 PYIYN-RDGTELH--CLKEHGAVLKLQF-L-RNHFLLASIN------------------KFGQLRYQDVTMGEIVGNFRT 58 (359)
Q Consensus 2 v~iwd-~~g~~~~--~l~~h~~~~~l~~-s-~~~~~l~s~~------------------~dg~i~iwd~~~~~~~~~~~~ 58 (359)
|.+.| .+.++.. .+....++..+++ + |++.++++++ .++.+.+.|..+.+.+.++.-
T Consensus 114 VavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~V 193 (595)
T 1fwx_A 114 VARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLV 193 (595)
T ss_dssp EEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEe
Confidence 44566 5666655 4444455688888 5 9999988874 346899999999999988875
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------eEEEEeCCC--Ccc-eEE
Q 041916 59 GLGRTDVMRVNPFNGVVSLGHSGG--------------------------------------TVTMWKPTT--AAP-LIK 97 (359)
Q Consensus 59 ~~~~v~~~~~sp~~~~l~sg~~dg--------------------------------------~v~lwd~~~--~~~-~~~ 97 (359)
.. ....++++|+|.++++.+.+. .|.+.|..+ +.. +..
T Consensus 194 gg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~ 272 (595)
T 1fwx_A 194 SG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRY 272 (595)
T ss_dssp SS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEE
T ss_pred CC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEE
Confidence 43 457788999999988887543 377777776 444 444
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------------eeEec--cCCceeEEEcCCc--eEEEEcC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYE------------VLQTL--PGHAKTLDFSQKG--LLAVGTG 160 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~------------~~~~~--~~~i~~~~~s~~g--l~~~~~d 160 (359)
+.... ...++.++|||+++++++ .+.+|.++|+.+.+ .+... ......++|+|+| +++.-.+
T Consensus 273 Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ld 351 (595)
T 1fwx_A 273 IPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLD 351 (595)
T ss_dssp EEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTT
T ss_pred EecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecC
Confidence 44322 346799999999977766 57899999999753 23333 2357899999999 4445578
Q ss_pred CcEEEEcCCCC---------CCccceeecccCCCC--cceEEEEEeeCCCEEEEEcC
Q 041916 161 SFVQILGDFSG---------SHNYSRYMGHSMVKG--YQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 161 ~~i~i~d~~~~---------~~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~~~~~ 206 (359)
+.|.+||+... ...+..+..|-. ++ ..-.++.++|||++|+++..
T Consensus 352 sqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq-pGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 352 SQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp TEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred CcEEEEEhhHhhhhhcccccceeEEEeecccc-cccceeccceEeCCCCCEEEEcCC
Confidence 99999997551 123333333311 00 01122345799999988653
No 233
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=9.5e-09 Score=99.84 Aligned_cols=198 Identities=9% Similarity=0.016 Sum_probs=136.9
Q ss_pred eEEEe-CCCcEEEEeccCCC--------------------------------e-EEEEEecCCCEEEEEecCC-------
Q 041916 2 PYIYN-RDGTELHCLKEHGA--------------------------------V-LKLQFLRNHFLLASINKFG------- 40 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~--------------------------------~-~~l~~s~~~~~l~s~~~dg------- 40 (359)
|+.|| .+|+++..+..... + ..++++|++.+|+.++.++
T Consensus 192 v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~ 271 (677)
T 1kb0_A 192 ITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKV 271 (677)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHH
T ss_pred EEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCC
Confidence 77899 89999877654211 1 3578999988888877654
Q ss_pred ------------eEEEEECCCCeEEEEEecCC---------CCeEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCcceE
Q 041916 41 ------------QLRYQDVTMGEIVGNFRTGL---------GRTDVMRVNPFN---GVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 41 ------------~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~---~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
+|..+|..+|+.+..++... .....+....+| ..++.++.+|.|+++|..+++.+.
T Consensus 272 ~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~ 351 (677)
T 1kb0_A 272 RSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFIS 351 (677)
T ss_dssp HSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred CCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEec
Confidence 59999999999998877421 122233344467 688999999999999999999877
Q ss_pred EEeccCC-----------Ce------------------------EEEEEcCCCCEEEEEeC-------------------
Q 041916 97 KMLCHQG-----------PV------------------------SALAFHPNGHLMATSGK------------------- 122 (359)
Q Consensus 97 ~~~~h~~-----------~v------------------------~~i~~~~~~~~l~~~~~------------------- 122 (359)
.+..... ++ ..++|+|++.++++...
T Consensus 352 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~ 431 (677)
T 1kb0_A 352 AKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP 431 (677)
T ss_dssp EEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT
T ss_pred cccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccc
Confidence 6542110 01 15788998888877643
Q ss_pred ------------------------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCCCc
Q 041916 123 ------------------------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGSHN 174 (359)
Q Consensus 123 ------------------------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~~~ 174 (359)
.+.|..||+.+++.+..+ ..++....++..+ +++++.+|.+++||..++ +.
T Consensus 432 ~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~ 510 (677)
T 1kb0_A 432 GKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG-EK 510 (677)
T ss_dssp TSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CE
T ss_pred cccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC-ce
Confidence 278999999999988777 3344454555554 666778999999998887 45
Q ss_pred cceeecccCCCCcceEEEEEeeCCCEEEE
Q 041916 175 YSRYMGHSMVKGYQIGKVSFRPYEDVLGI 203 (359)
Q Consensus 175 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~~ 203 (359)
+..+..... ..-.-+.|.++|+.+++
T Consensus 511 lw~~~~~~~---~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 511 LWEAPTGTG---VVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEEEECSSC---CCSCCEEEEETTEEEEE
T ss_pred eeeeeCCCC---cccCCEEEEeCCEEEEE
Confidence 444443321 12334567788865443
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=1.1e-08 Score=90.14 Aligned_cols=197 Identities=12% Similarity=0.040 Sum_probs=134.3
Q ss_pred eEEEeCCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 2 PYIYNRDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
|+.||..|.....+..+... .++...+++. |..++.++.|..+|.. ++.+..+......+.++...+++.+++ ++
T Consensus 119 l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t- 194 (330)
T 3hxj_A 119 LYAINTDGTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYF-GS- 194 (330)
T ss_dssp EEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEE-ES-
T ss_pred EEEEcCCCCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEE-Ee-
Confidence 56777447777666655554 6677777776 5557778999999998 888877776666777888877877555 44
Q ss_pred CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEE
Q 041916 81 GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLA 156 (359)
Q Consensus 81 dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~ 156 (359)
+.|..|| .++..+..+......+.++.+.++|. |..++.++.|..+|. ++..+..+ ...+.++.+.++| +++
T Consensus 195 -~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v 270 (330)
T 3hxj_A 195 -DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYF 270 (330)
T ss_dssp -SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEE
T ss_pred -CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEE
Confidence 7799999 67777766665566788889988875 455667788888884 45555554 2234567777777 888
Q ss_pred EEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 157 VGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 157 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++.+|.|..+|. ++ .....+... ...+.++...+++. |.+|+.+|.+.+.
T Consensus 271 ~t~~ggl~~~d~-~g-~~~~~~~~~----~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 271 GSYDGHLYAINP-DG-TEKWNFETG----SWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp ECTTCEEEEECT-TS-CEEEEEECS----SCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred ecCCCCEEEECC-CC-cEEEEEEcC----CccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 888889999994 44 333333222 22566677767765 4456666654443
No 235
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.07 E-value=5.1e-08 Score=81.84 Aligned_cols=183 Identities=10% Similarity=0.040 Sum_probs=126.8
Q ss_pred EEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916 11 ELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPFNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 11 ~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~sg~~dg~v~lw 87 (359)
.+.++...... ..+.|+. +.++.+.+.+|.|+++|+.+|+.+..+ -.... -..+++.. +.++++...++.+.+|
T Consensus 45 Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~ 121 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW 121 (268)
T ss_dssp EEEEEECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred EEEEEcCCCccccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence 44556433334 7889984 677778888899999999999988877 33221 23355543 3555556678999999
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc--------CCceeEEEcCCc-eEEEE
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP--------GHAKTLDFSQKG-LLAVG 158 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--------~~i~~~~~s~~g-l~~~~ 158 (359)
|..+.+.+.++.... .-..++ +|+..|+.+..++.|.++|..+.+.+..+. ..++.+.|. +| +++..
T Consensus 122 D~~Tl~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 122 SGMPPQRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp ETTTTEEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred ECCcCcEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 999999998887432 223444 578888888788999999999998877762 134677777 66 66666
Q ss_pred -cCCcEEEEcCCCCCCccceeecc---------cCCCCcceEEEEEeeCCCEE
Q 041916 159 -TGSFVQILGDFSGSHNYSRYMGH---------SMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 159 -~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~l 201 (359)
.++.|.+.|..++ .....+... ........+.|+|+|+++.|
T Consensus 198 w~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 198 WHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp TTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 4689999998777 444433221 01123467999999987643
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=2.1e-08 Score=97.40 Aligned_cols=212 Identities=12% Similarity=0.075 Sum_probs=143.2
Q ss_pred eEEEe-CCCcEEEEeccC-C-----Ce-EEEEEecCCCEEEEEec------CCeEEEEECCCCeEEEEEecCCCC-----
Q 041916 2 PYIYN-RDGTELHCLKEH-G-----AV-LKLQFLRNHFLLASINK------FGQLRYQDVTMGEIVGNFRTGLGR----- 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-~-----~~-~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~----- 62 (359)
|+.+| .+|+++..+..+ . .+ ...... ++ .+++++. ++.|..||..+|+.+..+......
T Consensus 140 l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~-~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~ 217 (677)
T 1kb0_A 140 LIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF-KG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPF 217 (677)
T ss_dssp EEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred EEEEECCCCCEEeeecCCcCcCcCcccccCcEEE-CC-EEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccc
Confidence 67788 789998888765 2 22 122221 33 4555443 689999999999999888643211
Q ss_pred ---------------------------eEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCcceE
Q 041916 63 ---------------------------TDVMRVNPFNGVVSLGHSGG-------------------TVTMWKPTTAAPLI 96 (359)
Q Consensus 63 ---------------------------v~~~~~sp~~~~l~sg~~dg-------------------~v~lwd~~~~~~~~ 96 (359)
...++++|++.+++.++.++ .|..+|..+++.+.
T Consensus 218 ~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W 297 (677)
T 1kb0_A 218 EDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKW 297 (677)
T ss_dssp SSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEE
Confidence 13578889888888887664 59999999999888
Q ss_pred EEec--cC-------CCeEEEEEcCCC---CEEEEEeCCCeEEEEEcCCceeeEecc-CCc-------------------
Q 041916 97 KMLC--HQ-------GPVSALAFHPNG---HLMATSGKECKIKIWDLRKYEVLQTLP-GHA------------------- 144 (359)
Q Consensus 97 ~~~~--h~-------~~v~~i~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i------------------- 144 (359)
.++. |. .....+....+| ..+++++.+|.|+++|..+++++..++ .++
T Consensus 298 ~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 298 HYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp EEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred EEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 8763 21 112223333477 678999999999999999998876552 110
Q ss_pred ------------------eeEEEcCCc--eEEEEc-------------------------------------------CC
Q 041916 145 ------------------KTLDFSQKG--LLAVGT-------------------------------------------GS 161 (359)
Q Consensus 145 ------------------~~~~~s~~g--l~~~~~-------------------------------------------d~ 161 (359)
..++++|++ +++... .|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 256888876 444332 16
Q ss_pred cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCCCc
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPN 221 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d~~ 221 (359)
.|..||+.++. ..-.+. +.. ++.+..+...+..+++++.+|.+..|...+++-.
T Consensus 458 ~l~A~D~~tG~-~~W~~~-~~~----~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 458 RLLAWDPVAQK-AAWSVE-HVS----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEETTTTE-EEEEEE-ESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEeCCCCc-EEeecC-CCC----CCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 79999987773 333332 211 4555667788889999999998888877666543
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.01 E-value=4.9e-08 Score=82.81 Aligned_cols=166 Identities=11% Similarity=-0.027 Sum_probs=117.2
Q ss_pred eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|.++| .+|+.+..+.-.... ..+++.. +.+.++...++.+.++|..+++.+.++...... ...+++||..++++
T Consensus 46 v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs 122 (266)
T 2iwa_A 46 VRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGS 122 (266)
T ss_dssp EEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEE
T ss_pred EEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEE
Confidence 67888 889988887643333 4555553 234444456889999999999999988744111 23355677766666
Q ss_pred eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC-----------
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG----------- 142 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------- 142 (359)
..++.|.++|+.+.+.+..+.... ...+.+.|. +|..++....++.|.+.|..+++.+..+.-
T Consensus 123 ~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~ 201 (266)
T 2iwa_A 123 DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEG 201 (266)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccc
Confidence 778999999999988877776321 136788888 675555554678999999999998877721
Q ss_pred -----CceeEEEcCCc--eEEEE-cCCcEEEEcCCCC
Q 041916 143 -----HAKTLDFSQKG--LLAVG-TGSFVQILGDFSG 171 (359)
Q Consensus 143 -----~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~ 171 (359)
....|+|+|++ +++++ ..+.|.+.++...
T Consensus 202 ~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 202 FRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred ccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 23799999998 44444 5678888886443
No 238
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.96 E-value=1.9e-08 Score=88.58 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=119.2
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALA 109 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~ 109 (359)
+..|..++.++.|..+|.. |+....+..+...+.++...+++. +..|+.++.|..||.. +..+..+......+.++.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 4456777788999999998 888777776666677777777776 5557788999999998 777777665566677888
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCceeeEec---cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCC
Q 041916 110 FHPNGHLMATSGKECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVK 185 (359)
Q Consensus 110 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 185 (359)
+.+++.+++ ++ +.|..|| .+++.+..+ ...+.++...++| +++++.++.|..+|. ++ .....+.....
T Consensus 184 ~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g-~~~~~~~~~~~-- 255 (330)
T 3hxj_A 184 IGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG-TEKWRFKTGKR-- 255 (330)
T ss_dssp ECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS-CEEEEEECSSC--
T ss_pred EcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC-CEeEEeeCCCC--
Confidence 888887554 44 7899999 777666555 2457889999998 888888889999973 44 33333332211
Q ss_pred CcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 186 GYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 186 ~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+.++.+.+++ .|.+++.+|.+..+.
T Consensus 256 --~~~~~~~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 256 --IESSPVIGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp --CCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred --ccccceEcCCC-eEEEecCCCCEEEEC
Confidence 23445555555 455666676555554
No 239
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=1.5e-08 Score=90.71 Aligned_cols=186 Identities=8% Similarity=-0.073 Sum_probs=114.0
Q ss_pred CeEEEe-CCCcEEEEeccC--------CCeEEEEEecCCCEEEEEec--CCeEEE--EECCCCeEEEEEecCCC------
Q 041916 1 YPYIYN-RDGTELHCLKEH--------GAVLKLQFLRNHFLLASINK--FGQLRY--QDVTMGEIVGNFRTGLG------ 61 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h--------~~~~~l~~s~~~~~l~s~~~--dg~i~i--wd~~~~~~~~~~~~~~~------ 61 (359)
+|.+|| .+++.+.++.-+ ..+..++|+|||++|+++.. +..|.+ +|+.+ +..+.....
T Consensus 97 ~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~ 173 (368)
T 1mda_H 97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPG 173 (368)
T ss_dssp EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEE
T ss_pred EEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccC
Confidence 378999 899999998754 34588999999999988864 467888 88865 333321100
Q ss_pred -CeEEEEE-------------------------------------cCCCCEEEEEeCCCeEEEEeCCCCcc--eEEEec-
Q 041916 62 -RTDVMRV-------------------------------------NPFNGVVSLGHSGGTVTMWKPTTAAP--LIKMLC- 100 (359)
Q Consensus 62 -~v~~~~~-------------------------------------sp~~~~l~sg~~dg~v~lwd~~~~~~--~~~~~~- 100 (359)
.-.-+++ ++++..++..+. +.|.+.|+.+... +..+..
T Consensus 174 g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~ 252 (368)
T 1mda_H 174 AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN 252 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS
T ss_pred CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec
Confidence 0000111 222222222333 5566666543221 111110
Q ss_pred ---------cCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCceeeEec--cCCceeEEEcCCc---eEEE
Q 041916 101 ---------HQGPVSALAFHPNGHLMATSGK---------ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG---LLAV 157 (359)
Q Consensus 101 ---------h~~~v~~i~~~~~~~~l~~~~~---------d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g---l~~~ 157 (359)
.......++|+|+++.++++.. +..+.++|+.+++.+..+ ......++|+|+| +++.
T Consensus 253 ~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~ 332 (368)
T 1mda_H 253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred cccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEc
Confidence 0111122789999998887543 235669999999998888 3468999999999 4555
Q ss_pred E-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEee
Q 041916 158 G-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRP 196 (359)
Q Consensus 158 ~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 196 (359)
. .++.|.++|+.+. +.+..+.... ....+++.+
T Consensus 333 ~~~~~~VsVID~~t~-kvv~~I~vg~-----~P~~i~~~~ 366 (368)
T 1mda_H 333 SAGTEVLDIYDAASD-QDQSSVELDK-----GPESLSVQN 366 (368)
T ss_dssp ETTTTEEEEEESSSC-EEEEECCCCS-----CCCEEECCC
T ss_pred cCCCCeEEEEECCCC-cEEEEEECCC-----CCCEEEeec
Confidence 5 4899999998776 4555444332 345555543
No 240
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=4.8e-07 Score=81.29 Aligned_cols=201 Identities=11% Similarity=0.011 Sum_probs=128.0
Q ss_pred eEEEe-CCCcEEEEeccCC----------Ce-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEc
Q 041916 2 PYIYN-RDGTELHCLKEHG----------AV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVN 69 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~----------~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s 69 (359)
|+.|| .+|+.+..+.... .+ ..+. .++..+++++.++.|..+|..+|+.+..+.............
T Consensus 65 v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~ 142 (376)
T 3q7m_A 65 VKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVT--VSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS 142 (376)
T ss_dssp EEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEE--EETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE
T ss_pred EEEEEccCCceeeeecCccccccccccCcccccCce--EeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE
Confidence 67788 6888876665522 22 2222 245577778889999999999999988777543322222222
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCe-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccCC-
Q 041916 70 PFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPV-----SALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPGH- 143 (359)
Q Consensus 70 p~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v-----~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~- 143 (359)
+..+++++.++.|..+|..+++.+..+....... ..... .+..+++++.++.|..+|..+++.+......
T Consensus 143 --~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~ 218 (376)
T 3q7m_A 143 --DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQ 218 (376)
T ss_dssp --TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC
T ss_pred --CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEeccc
Confidence 4577888899999999999998887765432211 12222 2456788888999999999999887666211
Q ss_pred ------------c-eeEEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 144 ------------A-KTLDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 144 ------------i-~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
+ ....+. ++ +++++.++.+..+|..++. ........ ....+.. ++..+.+++.+|.
T Consensus 219 ~~~~~~~~~~~~~~~~p~~~-~~~v~~~~~~g~l~~~d~~tG~-~~w~~~~~------~~~~~~~--~~~~l~~~~~~g~ 288 (376)
T 3q7m_A 219 ATGSTEIDRLSDVDTTPVVV-NGVVFALAYNGNLTALDLRSGQ-IMWKRELG------SVNDFIV--DGNRIYLVDQNDR 288 (376)
T ss_dssp -----------CCCCCCEEE-TTEEEEECTTSCEEEEETTTCC-EEEEECCC------CEEEEEE--ETTEEEEEETTCC
T ss_pred CCCCcccccccccCCCcEEE-CCEEEEEecCcEEEEEECCCCc-EEeeccCC------CCCCceE--ECCEEEEEcCCCe
Confidence 1 111122 34 7777788999999987773 32222211 2333333 4667777777776
Q ss_pred EEEEEcCCC
Q 041916 210 SSILVPGSG 218 (359)
Q Consensus 210 ~~i~~~~~~ 218 (359)
+..+...++
T Consensus 289 l~~~d~~tG 297 (376)
T 3q7m_A 289 VMALTIDGG 297 (376)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 666665444
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.94 E-value=2.5e-07 Score=83.17 Aligned_cols=207 Identities=16% Similarity=0.126 Sum_probs=131.9
Q ss_pred eEEEe-CCCcEEEEeccCCCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCe-----EEEEEcCCCCE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRT-----DVMRVNPFNGV 74 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v-----~~~~~sp~~~~ 74 (359)
|+.+| .+|+.+..+.....+ ...... +..+++++.++.|..+|..+|+.+..+....... ...... +..
T Consensus 115 l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~ 190 (376)
T 3q7m_A 115 VYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGA 190 (376)
T ss_dssp EEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTE
T ss_pred EEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCE
Confidence 67788 788888777655444 333332 3467778889999999999999888876543211 112222 356
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCC-------eEEEEEcC--CCCEEEEEeCCCeEEEEEcCCceeeEecc-CCc
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGP-------VSALAFHP--NGHLMATSGKECKIKIWDLRKYEVLQTLP-GHA 144 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~-------v~~i~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i 144 (359)
++.++.+|.|..+|+.+++.+......... +..+...| .+..+++++.++.|..+|..+++.+.... ...
T Consensus 191 v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 270 (376)
T 3q7m_A 191 AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSV 270 (376)
T ss_dssp EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCCE
T ss_pred EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCCC
Confidence 777888999999999999887766532110 00011122 35678888889999999999998877663 334
Q ss_pred eeEEEcCCceEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 145 KTLDFSQKGLLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 145 ~~~~~s~~gl~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
..+....+.+++++.++.|..+|..++. ........ ....+..... .+..|++++.+|.+..+...++
T Consensus 271 ~~~~~~~~~l~~~~~~g~l~~~d~~tG~-~~w~~~~~---~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG 338 (376)
T 3q7m_A 271 NDFIVDGNRIYLVDQNDRVMALTIDGGV-TLWTQSDL---LHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDG 338 (376)
T ss_dssp EEEEEETTEEEEEETTCCEEEEETTTCC-EEEEECTT---TTSCCCCCEE--ETTEEEEECTTSEEEEEETTTC
T ss_pred CCceEECCEEEEEcCCCeEEEEECCCCc-EEEeeccc---CCCcccCCEE--ECCEEEEEeCCCeEEEEECCCC
Confidence 4555543338888889999999987773 33222211 0112222222 3567888888887777775543
No 242
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.94 E-value=7.5e-08 Score=93.74 Aligned_cols=212 Identities=10% Similarity=0.047 Sum_probs=137.5
Q ss_pred eEEEe-CCCcEEEEeccC--CCe-EEEEEec---CCCEEEEEe-----cCCeEEEEECCCCeEEEEEecCC---------
Q 041916 2 PYIYN-RDGTELHCLKEH--GAV-LKLQFLR---NHFLLASIN-----KFGQLRYQDVTMGEIVGNFRTGL--------- 60 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h--~~~-~~l~~s~---~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~--------- 60 (359)
|+.+| .+|+++..+... ... ..+..+| ++..++..+ .+|.|..||..+|+.+..+....
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~ 212 (689)
T 1yiq_A 133 LEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEG 212 (689)
T ss_dssp EEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCS
T ss_pred EEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccc
Confidence 67788 789988776653 111 1111222 444443322 36899999999999998876311
Q ss_pred ----------------------CCeEEEEEcCCCCEEEEEeCCCe-------------------EEEEeCCCCcceEEEe
Q 041916 61 ----------------------GRTDVMRVNPFNGVVSLGHSGGT-------------------VTMWKPTTAAPLIKML 99 (359)
Q Consensus 61 ----------------------~~v~~~~~sp~~~~l~sg~~dg~-------------------v~lwd~~~~~~~~~~~ 99 (359)
.....++++|++.+++.++.++. |..||+.+++.+..++
T Consensus 213 ~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~ 292 (689)
T 1yiq_A 213 KGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQ 292 (689)
T ss_dssp HHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred ccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeee
Confidence 01125788898889999888764 9999999999988876
Q ss_pred c--cC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEEcCCceeeEecc-C------------------------
Q 041916 100 C--HQ-------GPVSALAFHPNGH---LMATSGKECKIKIWDLRKYEVLQTLP-G------------------------ 142 (359)
Q Consensus 100 ~--h~-------~~v~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~-~------------------------ 142 (359)
. |. .++.......+|. .++.++.+|.++++|..+++++...+ .
T Consensus 293 ~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~ 372 (689)
T 1yiq_A 293 TTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAY 372 (689)
T ss_dssp SSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCT
T ss_pred cCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccc
Confidence 4 21 1222222223565 78889999999999999998873320 0
Q ss_pred -----------------CceeEEEcCCc--eEEEEc--------------------------------------------
Q 041916 143 -----------------HAKTLDFSQKG--LLAVGT-------------------------------------------- 159 (359)
Q Consensus 143 -----------------~i~~~~~s~~g--l~~~~~-------------------------------------------- 159 (359)
.-..++++|+. +++...
T Consensus 373 ~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~ 452 (689)
T 1yiq_A 373 WKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKS 452 (689)
T ss_dssp TTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTT
T ss_pred cCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCC
Confidence 01236888876 443321
Q ss_pred -CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 160 -GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 160 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
+|.|..||+.++ +..-.+..+. ++....+...+.++++|+.||.+..|...++.
T Consensus 453 ~~g~l~A~D~~tG-~~~W~~~~~~-----~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 453 WSGKLIAWDPVKQ-QAAWEVPYVT-----IFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp CEEEEEEEETTTT-EEEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cceeEEEEECCCC-CeEeEccCCC-----CccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 367889998777 3333333322 33444667788899999999988888765544
No 243
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.86 E-value=2.3e-07 Score=86.78 Aligned_cols=187 Identities=10% Similarity=-0.020 Sum_probs=128.5
Q ss_pred cCCCEEEEEec-CCeEEEEECCCCeEEEEEecC-CCCeEEEEE-c-CCCCEEEEEe------------------CCCeEE
Q 041916 28 RNHFLLASINK-FGQLRYQDVTMGEIVGNFRTG-LGRTDVMRV-N-PFNGVVSLGH------------------SGGTVT 85 (359)
Q Consensus 28 ~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-s-p~~~~l~sg~------------------~dg~v~ 85 (359)
+||++|+.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + |++.++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 37877766654 567999999999988855433 245788998 5 9999988884 346899
Q ss_pred EEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCC--------------------------------------eEE
Q 041916 86 MWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKEC--------------------------------------KIK 127 (359)
Q Consensus 86 lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~--------------------------------------~i~ 127 (359)
++|..+.+.+..+.... .-..++++|+|+++++++.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999988877766322 345688999999999888553 377
Q ss_pred EEEcCC--cee-eEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCC-------ccceeecccCCCCcceEEE
Q 041916 128 IWDLRK--YEV-LQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSH-------NYSRYMGHSMVKGYQIGKV 192 (359)
Q Consensus 128 iwd~~~--~~~-~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~v~~~ 192 (359)
+.|.++ ++. +..+ .....++.++||| +++++ .+++|.++|+.+... ......... ..+.....+
T Consensus 258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~ 336 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHT 336 (595)
T ss_dssp EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEE
T ss_pred EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceE
Confidence 778777 444 4444 3467899999999 33333 568999999764310 001111111 134468899
Q ss_pred EEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 193 SFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 193 ~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
+|+|+|...++.-.++.+..|...
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHH
T ss_pred EECCCCeEEEEEecCCcEEEEEhh
Confidence 999999444555566666666543
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=3.9e-06 Score=71.53 Aligned_cols=149 Identities=12% Similarity=0.031 Sum_probs=98.8
Q ss_pred eEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 21 VLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 21 ~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
+.+++|++++..|+ +-..++.|..+++..+.....+.........++++|++. ++++-...+.|.++++.........
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~ 117 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE
Confidence 47899999765555 444578999999976654333333335688999999765 4445556789999998744322222
Q ss_pred eccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCceeeEec----cCCceeEEEcCCc--eEEEE-cCCcEEEEcC
Q 041916 99 LCHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKYEVLQTL----PGHAKTLDFSQKG--LLAVG-TGSFVQILGD 168 (359)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~----~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~ 168 (359)
.........++++|++..|+.+.. .+.|..+++.... ...+ -.....++++|++ ++.+. ..+.|.++|+
T Consensus 118 ~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (267)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEec
Confidence 222245689999997676666554 3688888876432 2222 2356899999976 55555 4579999996
Q ss_pred CC
Q 041916 169 FS 170 (359)
Q Consensus 169 ~~ 170 (359)
..
T Consensus 197 ~g 198 (267)
T 1npe_A 197 AQ 198 (267)
T ss_dssp TE
T ss_pred CC
Confidence 53
No 245
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.84 E-value=3.4e-06 Score=74.06 Aligned_cols=186 Identities=12% Similarity=0.045 Sum_probs=110.6
Q ss_pred CeEEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEec-----CCCCeEEEEEcC-CCCEEEEEeC------------
Q 041916 20 AVLKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRT-----GLGRTDVMRVNP-FNGVVSLGHS------------ 80 (359)
Q Consensus 20 ~~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~sp-~~~~l~sg~~------------ 80 (359)
.+.++++.+ ++.++ .+...+.|..+|..++.. ..+.. ....++.+++.| +|.++++-..
T Consensus 81 ~p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEEE-EEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcEE-EEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 358899998 66544 444455588899775542 22221 113478899999 9987776432
Q ss_pred -----CCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCc-----eeeEeccCCceeEEE
Q 041916 81 -----GGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKY-----EVLQTLPGHAKTLDF 149 (359)
Q Consensus 81 -----dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~-----~~~~~~~~~i~~~~~ 149 (359)
+|.|..||..++........ -.....|+|+|+|++|+++ +..+.|..||+... +....+.+ ...+++
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~ 236 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKR 236 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEE
Confidence 36799999876654322222 2234679999999977665 55689999998742 22223445 788999
Q ss_pred cCCc-eEEEE-c----------CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEE
Q 041916 150 SQKG-LLAVG-T----------GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSI 212 (359)
Q Consensus 150 s~~g-l~~~~-~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i 212 (359)
+++| ++++. . .+.|..+|. .+ .....+.......-..++++++ .++.++++....+.+..
T Consensus 237 d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G-~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~ 308 (322)
T 2fp8_A 237 NADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FG-NILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGI 308 (322)
T ss_dssp CTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TS-CEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEE
T ss_pred CCCCCEEEEecCcccccccCCCccEEEEECC-CC-CEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEE
Confidence 9999 55544 3 367888884 33 4444443321101124566665 34433333333333333
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.84 E-value=3.6e-07 Score=76.68 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=109.4
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEE-EecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLAS-INKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH 79 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~ 79 (359)
|+++| .+|+.+..+.-..........+++..|.. ...++.+.+||..+.+.+.++...... ..++ +++..|+.+.
T Consensus 67 v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~Sd 143 (262)
T 3nol_A 67 IRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSD 143 (262)
T ss_dssp EEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECC
T ss_pred EEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEEC
Confidence 67889 89999888876655544333334444444 445889999999999999999864322 3344 5676666666
Q ss_pred CCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEeccC------------
Q 041916 80 SGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLPG------------ 142 (359)
Q Consensus 80 ~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------ 142 (359)
.++.|.++|+.+.+.+..+.... ..++.+.|. +|..++..-.+..|.+.|..+++.+..+.-
T Consensus 144 Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~ 222 (262)
T 3nol_A 144 GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPS 222 (262)
T ss_dssp SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCS
T ss_pred CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccC
Confidence 67889999999998887766321 335567776 676555555688999999999998777611
Q ss_pred ---CceeEEEcCCc--eEEEEc
Q 041916 143 ---HAKTLDFSQKG--LLAVGT 159 (359)
Q Consensus 143 ---~i~~~~~s~~g--l~~~~~ 159 (359)
-.+.|+|+|++ +++.|.
T Consensus 223 ~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 223 PIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SCCCEEEEEEETTTTEEEEEET
T ss_pred cCCceEEEEEcCCCCEEEEECC
Confidence 23789999987 666663
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.79 E-value=5.9e-06 Score=70.42 Aligned_cols=193 Identities=9% Similarity=0.003 Sum_probs=116.0
Q ss_pred eEEEeCCCcEEE-Eecc-CCCeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYNRDGTELH-CLKE-HGAVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd~~g~~~~-~l~~-h~~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|++++.+|.... .+.. ...+.+++++|++..|+ +-...+.|.++++........+.........++++|++..|+.+
T Consensus 60 I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~ 139 (267)
T 1npe_A 60 IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT 139 (267)
T ss_dssp EEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence 455663343222 2222 23569999999765554 44557899999987433222222233567899999976655544
Q ss_pred eC---CCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec--cCCceeEEEcC
Q 041916 79 HS---GGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ 151 (359)
Q Consensus 79 ~~---dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~ 151 (359)
.. .+.|..+++... ....+. ..-.....++++|++..|+.+. ..+.|.++|+........+ ......++...
T Consensus 140 ~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~ 218 (267)
T 1npe_A 140 DWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYG 218 (267)
T ss_dssp ECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEET
T ss_pred ECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeC
Confidence 43 468888887643 333332 2234568999999877766555 5679999999764433222 23446777653
Q ss_pred CceEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCC
Q 041916 152 KGLLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED 199 (359)
Q Consensus 152 ~gl~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 199 (359)
+.++.+. .++.|..+|..++ .....+... .......+++.|++.
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g---~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAIS-KEMDTFHPH---KQTRLYGITIALSQC 263 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTT-EEEEEECCS---SCCCCCCEEEECSCC
T ss_pred CEEEEEECCCCeEEEEeCCCC-CceEEEccc---cccccceeeecCccC
Confidence 2255555 4579999997665 344443322 111367788888764
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.78 E-value=4.7e-07 Score=87.86 Aligned_cols=200 Identities=14% Similarity=0.139 Sum_probs=128.9
Q ss_pred eEEEe-CCCcEEEEeccC-------------------------------CCe-EEEEEecCCCEEEEEecCC--------
Q 041916 2 PYIYN-RDGTELHCLKEH-------------------------------GAV-LKLQFLRNHFLLASINKFG-------- 40 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h-------------------------------~~~-~~l~~s~~~~~l~s~~~dg-------- 40 (359)
|+.|| .+|+++..+... ..+ ..+++.|+..+++.++.++
T Consensus 180 v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~ 259 (668)
T 1kv9_A 180 VSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVR 259 (668)
T ss_dssp EEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHH
T ss_pred EEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCC
Confidence 67889 899998777531 112 3578999888888887665
Q ss_pred -----------eEEEEECCCCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEeCCCCcceEE
Q 041916 41 -----------QLRYQDVTMGEIVGNFRT--GL-------GRTDVMRVNPFNG---VVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 41 -----------~i~iwd~~~~~~~~~~~~--~~-------~~v~~~~~sp~~~---~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
.|..+|..+|+.+..++. |. .++....+..+|. .++.++.+|.++++|..+++.+..
T Consensus 260 ~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 339 (668)
T 1kv9_A 260 SPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISA 339 (668)
T ss_dssp STTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecc
Confidence 499999999999988875 22 2222223333564 688899999999999999988744
Q ss_pred EeccC-----------C-C------------------------eEEEEEcCCCCEEEEEe--------------------
Q 041916 98 MLCHQ-----------G-P------------------------VSALAFHPNGHLMATSG-------------------- 121 (359)
Q Consensus 98 ~~~h~-----------~-~------------------------v~~i~~~~~~~~l~~~~-------------------- 121 (359)
..... + + -..++++|+..++++..
T Consensus 340 ~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~ 419 (668)
T 1kv9_A 340 EKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAF 419 (668)
T ss_dssp EESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSC
T ss_pred ccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccccccc
Confidence 32111 0 0 01267888777665421
Q ss_pred ----------------CCCeEEEEEcCCceeeEec--cCCceeEEEcC-Cc-eEEEEcCCcEEEEcCCCCCCccceeecc
Q 041916 122 ----------------KECKIKIWDLRKYEVLQTL--PGHAKTLDFSQ-KG-LLAVGTGSFVQILGDFSGSHNYSRYMGH 181 (359)
Q Consensus 122 ----------------~d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~-~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 181 (359)
.+|.|..||+.+++.+..+ ..+.....+.. .+ +++++.|+.|++||..++ +.+..+...
T Consensus 420 ~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~~~~ 498 (668)
T 1kv9_A 420 NTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFEAQ 498 (668)
T ss_dssp CCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECS
T ss_pred ccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcC-hhheEecCC
Confidence 2478999999999987766 23333333333 34 677778999999998777 444444333
Q ss_pred cCCCCcceEEEEEeeCCC-EEEEEc
Q 041916 182 SMVKGYQIGKVSFRPYED-VLGIGH 205 (359)
Q Consensus 182 ~~~~~~~v~~~~~~p~~~-~l~~~~ 205 (359)
..... .-+.+..+|+ ++++++
T Consensus 499 ~~~~~---~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 499 SGIVA---APMTFELAGRQYVAIMA 520 (668)
T ss_dssp SCCCS---CCEEEEETTEEEEEEEE
T ss_pred CCccc---CceEEEECCEEEEEEEe
Confidence 21111 2234456666 444444
No 249
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.75 E-value=2.2e-06 Score=71.23 Aligned_cols=153 Identities=13% Similarity=0.077 Sum_probs=109.4
Q ss_pred eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|+++| .+|+.+..+.-.... -.+++.. +.+.+....++.+.+||..+.+.+.++...... ..++ +++..|+.+
T Consensus 45 v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vS 120 (243)
T 3mbr_X 45 VRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMS 120 (243)
T ss_dssp EEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEE
Confidence 67889 889998888766555 4445543 334444556899999999999999999864332 4555 456666666
Q ss_pred eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------------
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------ 141 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------ 141 (359)
..++.|.++|+.+.+.+.++.... ..++.+.|. +|..++..-.+..|.+.|..+++.+..+.
T Consensus 121 dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~ 199 (243)
T 3mbr_X 121 DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALT 199 (243)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCC
T ss_pred CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccccccc
Confidence 678899999999998887776322 245667765 66655555567899999999999877661
Q ss_pred ----CCceeEEEcCCc--eEEEEc
Q 041916 142 ----GHAKTLDFSQKG--LLAVGT 159 (359)
Q Consensus 142 ----~~i~~~~~s~~g--l~~~~~ 159 (359)
.-.+.|+++|++ +++.|-
T Consensus 200 ~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 200 DSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp CTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCcCCceEEEEEcCCCCEEEEECC
Confidence 123789999977 666663
No 250
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.75 E-value=6e-06 Score=72.01 Aligned_cols=200 Identities=10% Similarity=-0.034 Sum_probs=118.5
Q ss_pred eEEEeCCCcEEEEeccCCCeEEEEEecCCCEEEEEecC--CeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGAVLKLQFLRNHFLLASINKF--GQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg 78 (359)
|+.||.++.....+.....+.+++++++++++++.... ..|..+|..+++....... .......++..+++..+++.
T Consensus 55 I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d 134 (306)
T 2p4o_A 55 IVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD 134 (306)
T ss_dssp EEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEE
T ss_pred EEEECCCCceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEE
Confidence 55666555554444443445899999999866654332 2477788888875433322 22334566666665555555
Q ss_pred eCCCeEEEEeCCCCcc-eEEEe---------ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-cee--eEec--cC
Q 041916 79 HSGGTVTMWKPTTAAP-LIKML---------CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK-YEV--LQTL--PG 142 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~-~~~~~---------~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~~~--~~ 142 (359)
..+|.|.++|..++.. +.... ..-...+.| +|++.+|+++. ..+.|..||+.. +.. ...+ ..
T Consensus 135 ~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~ 212 (306)
T 2p4o_A 135 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT 212 (306)
T ss_dssp TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESC
T ss_pred CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccC
Confidence 5689999999875421 11110 111234555 78887766554 567999999874 321 1122 23
Q ss_pred CceeEEEcCCc-eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEe---eCCCEEEEEcCC
Q 041916 143 HAKTLDFSQKG-LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFR---PYEDVLGIGHSM 207 (359)
Q Consensus 143 ~i~~~~~s~~g-l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~l~~~~~d 207 (359)
....++++++| ++++. ..+.|.+||.. + .... +..... .....++++|. |++..|++++..
T Consensus 213 ~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G-~~~~-~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 213 NIDDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTI-IAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CCSSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEE-EECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCCeEECCCCCEEEEeCCCCeEEEECCC-C-CEEE-Eeeccc-ccCCceEEEEecccCCCCEEEEECCC
Confidence 56889999999 55554 46899999853 3 2211 111111 12368899998 888766655443
No 251
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.70 E-value=1.7e-06 Score=85.23 Aligned_cols=186 Identities=12% Similarity=0.135 Sum_probs=111.4
Q ss_pred EEEEEe-cCCCEEEEEec-CC----eEEEEECCCC-eEEE-EEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEe
Q 041916 22 LKLQFL-RNHFLLASINK-FG----QLRYQDVTMG-EIVG-NFRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWK 88 (359)
Q Consensus 22 ~~l~~s-~~~~~l~s~~~-dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd 88 (359)
...+|| |||++||.+.. +| .|+++|+.+| +.+. .+. .....++|+|||+.|+....| ..|.+++
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 778999 99998876543 22 5999999998 6321 111 113468899999887777654 3588888
Q ss_pred CCCCcce--EEEe-ccCCCeEEEEEcCCCCEEEEEeC---CCeEEEEEcCCc--ee-eEec----cCCceeEEEcCCc-e
Q 041916 89 PTTAAPL--IKML-CHQGPVSALAFHPNGHLMATSGK---ECKIKIWDLRKY--EV-LQTL----PGHAKTLDFSQKG-L 154 (359)
Q Consensus 89 ~~~~~~~--~~~~-~h~~~v~~i~~~~~~~~l~~~~~---d~~i~iwd~~~~--~~-~~~~----~~~i~~~~~s~~g-l 154 (359)
+.++... ..+. .......++.|+|||++|+..+. ...|.++|+.++ .. +..+ .+...++.|+..+ +
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 8876532 3333 23345678899999999877653 346888999875 22 1333 2234555555444 5
Q ss_pred EEEEc-C----CcEEEEcCCCCCCccce-eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 155 LAVGT-G----SFVQILGDFSGSHNYSR-YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 155 ~~~~~-d----~~i~i~d~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+..+. + ..|..+++.+. ..... +..+. ....+.++.+. .+.++++...+|...+++
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~-~~~~~~li~~~--~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQP-SDWSHVLVDHS--EDVFMESIAVR-SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTST-TCCCCEEECCC--SSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred EEEeCCCCCCCcEEEEEcCCCc-ccceeeEECCC--CCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence 54443 2 26777775432 12223 33332 12245555554 233455566677766654
No 252
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=2e-06 Score=81.85 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=111.7
Q ss_pred EEEEecCCCEEEEEecC----------------CeEEEEECCCCeEEEEEecCC---------CCeEEEEEcCCCC---E
Q 041916 23 KLQFLRNHFLLASINKF----------------GQLRYQDVTMGEIVGNFRTGL---------GRTDVMRVNPFNG---V 74 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~sp~~~---~ 74 (359)
.+++.++...++.++.+ +.|..+|..+|+.+..++... .....+...++|+ .
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~ 318 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPL 318 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEE
Confidence 36777776666666532 369999999999998886421 1111122234673 6
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccC-------------CCe--------------------------EEEEEcCCCC
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQ-------------GPV--------------------------SALAFHPNGH 115 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~-------------~~v--------------------------~~i~~~~~~~ 115 (359)
++.++.+|.+.++|..+++.+..+.... .++ ..++++|+..
T Consensus 319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g 398 (571)
T 2ad6_A 319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR 398 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence 7788999999999999998877654221 111 2467888877
Q ss_pred EEEEEe-------------------------------------CCCeEEEEEcCCceeeEecc--CCceeEEE-cCCc-e
Q 041916 116 LMATSG-------------------------------------KECKIKIWDLRKYEVLQTLP--GHAKTLDF-SQKG-L 154 (359)
Q Consensus 116 ~l~~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~--~~i~~~~~-s~~g-l 154 (359)
++++.+ .++.|..||+.+++.+..++ ..+.+..+ ..++ +
T Consensus 399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v 478 (571)
T 2ad6_A 399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV 478 (571)
T ss_dssp EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence 777654 34789999999999877762 23332222 2345 7
Q ss_pred EEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 155 LAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 155 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
++++.|+.|+.||..++ +.+..+.........+ +.+..+|+.++
T Consensus 479 ~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p---~~~~~~G~~yv 522 (571)
T 2ad6_A 479 WYATLDGYLKALDNKDG-KELWNFKMPSGGIGSP---MTYSFKGKQYI 522 (571)
T ss_dssp EEECTTSEEEEEETTTC-CEEEEEECSSCCCSCC---EEEEETTEEEE
T ss_pred EEEcCCCeEEEEECCCC-CEEEEEeCCCCcEeee---EEEEECCEEEE
Confidence 77788999999998877 4444443322111222 33557776443
No 253
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.68 E-value=2e-06 Score=72.21 Aligned_cols=151 Identities=13% Similarity=0.014 Sum_probs=106.7
Q ss_pred eEEEe-CCCcEEEEeccCCCe--EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAV--LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~--~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg 78 (359)
|+++| .+|+.+..+ -.... -.+++..+ .+.+....++.+.+||..+++.+.++..... -..++ +++..|+.+
T Consensus 77 v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vS 151 (268)
T 3nok_A 77 LRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRS 151 (268)
T ss_dssp EEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEE
T ss_pred EEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEE
Confidence 56778 778877666 33343 33555432 3444455689999999999999999986432 23444 567777777
Q ss_pred eCCCeEEEEeCCCCcceEEEeccC-----CCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc------------
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQ-----GPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP------------ 141 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~-----~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------ 141 (359)
..++.|.++|+.+.+.+.++.... ..++.+.|. +|..++..-.+..|.+.|..+++.+..+.
T Consensus 152 dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~ 230 (268)
T 3nok_A 152 DGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQV 230 (268)
T ss_dssp CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccc
Confidence 778999999999998887776322 245677776 77655555568899999999999877661
Q ss_pred ----CCceeEEEcCCc--eEEEE
Q 041916 142 ----GHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 142 ----~~i~~~~~s~~g--l~~~~ 158 (359)
.-.+.|+|+|++ +++.|
T Consensus 231 ~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 231 TNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp CCTTCCEEEEEECTTTCCEEEEE
T ss_pred cCcCCceEEEEEcCCCCEEEEeC
Confidence 124889999987 66665
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.66 E-value=8e-06 Score=71.68 Aligned_cols=180 Identities=11% Similarity=-0.015 Sum_probs=115.9
Q ss_pred CCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC--------------------CCCeEEEEEcC-CCCEEEE
Q 041916 19 GAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG--------------------LGRTDVMRVNP-FNGVVSL 77 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------------------~~~v~~~~~sp-~~~~l~s 77 (359)
..+.+++|++++.+++++..++.|..||..++... .+... ...+.++++.+ ++.++ .
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~-v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY-I 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE-E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEE-E
Confidence 34588999999987888888999999998766533 23210 12478899998 55544 4
Q ss_pred EeCCCeEEEEeCCCCcceEEEec-----cCCCeEEEEEcC-CCCEEEEEeC-----------------CCeEEEEEcCCc
Q 041916 78 GHSGGTVTMWKPTTAAPLIKMLC-----HQGPVSALAFHP-NGHLMATSGK-----------------ECKIKIWDLRKY 134 (359)
Q Consensus 78 g~~dg~v~lwd~~~~~~~~~~~~-----h~~~v~~i~~~~-~~~~l~~~~~-----------------d~~i~iwd~~~~ 134 (359)
+...+.|..+|..++.. ..+.. .......+++.| +|++.++-.. ++.|..||..++
T Consensus 97 ~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 54445588888775532 22211 113468899999 9987666432 367999998776
Q ss_pred eeeEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCC-ccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 135 EVLQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSH-NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 135 ~~~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
...... -.....++|+|+| ++++. ..+.|.+|++..... ....+.. . .+ ...+++.++|.++++...
T Consensus 176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~-~g--P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--I-PN--PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--C-SS--EEEEEECTTSCEEEEEEE
T ss_pred EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--C-CC--CCCeEECCCCCEEEEecC
Confidence 543222 2356789999998 44454 457899998654211 1122221 1 22 677899999987666544
No 255
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.65 E-value=3.8e-05 Score=64.65 Aligned_cols=193 Identities=12% Similarity=0.071 Sum_probs=122.4
Q ss_pred EeccCCC-eEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 041916 14 CLKEHGA-VLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT 90 (359)
Q Consensus 14 ~l~~h~~-~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~ 90 (359)
-+.+-.. +..++|+|++. ++++...++.|...|+. ++.+..+.- .....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 3444433 59999999865 45557778999999998 888887753 23567889999988877776677889999876
Q ss_pred CCcce---EEEe------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---ceeeEec----------cCCceeEE
Q 041916 91 TAAPL---IKML------CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---YEVLQTL----------PGHAKTLD 148 (359)
Q Consensus 91 ~~~~~---~~~~------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~----------~~~i~~~~ 148 (359)
....+ .... ........|+|+|.++.|+++.......+|.+.. ...+..+ -..+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 54422 2221 1233468999999998877777655445554431 1111111 12468999
Q ss_pred EcCCc--eEEEEc-CCcEEEEcCCCCCCccceeecccCC-----CCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 149 FSQKG--LLAVGT-GSFVQILGDFSGSHNYSRYMGHSMV-----KGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 149 ~s~~g--l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
++|.. +++.+. +..|.++|. .+ .....+.-.... .-.....|+|.++|+..++ +.....
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~-~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~ 246 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTL-VG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRF 246 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECT-TC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEE
T ss_pred EcCCCCeEEEEECCCCeEEEEcC-CC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceE
Confidence 99976 666664 578888884 34 233322211100 0125789999999975544 444433
No 256
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.65 E-value=0.00017 Score=63.10 Aligned_cols=209 Identities=10% Similarity=-0.066 Sum_probs=123.6
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCC---CeE-EEEEecCCCCeEEEEEcCCC-CE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTM---GEI-VGNFRTGLGRTDVMRVNPFN-GV 74 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~---~~~-~~~~~~~~~~v~~~~~sp~~-~~ 74 (359)
|+..| ..+.....+..-..+.+++|++.+..|+.+ ...+.|..+++.. +.. ...+......+..+++.+.+ .+
T Consensus 12 I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~l 91 (316)
T 1ijq_A 12 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI 91 (316)
T ss_dssp EEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEE
T ss_pred EEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeE
Confidence 55666 333444445555566899999876555444 4568999999875 122 22233333456889998755 45
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCceeeEec----cCCceeEE
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKE--CKIKIWDLRKYEVLQTL----PGHAKTLD 148 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~----~~~i~~~~ 148 (359)
+++-...+.|.++++........+...-.....++++|.+..|+.+... +.|..+++.... ...+ -.....|+
T Consensus 92 y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~~~~~~~~P~gla 170 (316)
T 1ijq_A 92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGIT 170 (316)
T ss_dssp EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSCSCEEEEE
T ss_pred EEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEEEECCCCCceEEE
Confidence 5555678899999987443322233333567899999977766665543 688888886432 2222 23568999
Q ss_pred EcCCc--eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 149 FSQKG--LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 149 ~s~~g--l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
++|++ ++.+. ..+.|..+|+... ....+..... .......+++. .+.++++....+.+..+..
T Consensus 171 ~d~~~~~lY~~D~~~~~I~~~d~dg~--~~~~~~~~~~-~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 171 LDLLSGRLYWVDSKLHSISSIDVNGG--NRKTILEDEK-RLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSC--SCEEEEECTT-TTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EeccCCEEEEEECCCCeEEEEecCCC--ceEEEeecCC-ccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 99876 55555 4578999996532 2233322110 11235677774 4555555555565555554
No 257
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.64 E-value=2.2e-05 Score=68.37 Aligned_cols=197 Identities=9% Similarity=0.022 Sum_probs=119.3
Q ss_pred CcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC--CeEEE
Q 041916 9 GTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG--GTVTM 86 (359)
Q Consensus 9 g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d--g~v~l 86 (359)
.+.+..+.....+..++|++++.++++-..++.|..||... .....+. ....+.++++.++|+++++.... ..|..
T Consensus 22 ~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 22 AKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred ceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 34566676655669999999999777766789999999875 4443333 23568899999999976665432 24777
Q ss_pred EeCCCCcceEEEe-ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-eE---------ec-c--CCceeEEEcCC
Q 041916 87 WKPTTAAPLIKML-CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-LQ---------TL-P--GHAKTLDFSQK 152 (359)
Q Consensus 87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~---------~~-~--~~i~~~~~s~~ 152 (359)
+|..+++...... ........++..+++..+++-..++.|..+|..++.. +. .. . .....+ +|+
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 7877776432222 1122335566666555455544688999999876421 11 01 1 123445 777
Q ss_pred c--eEEEE-cCCcEEEEcCCCCCCc--cceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 153 G--LLAVG-TGSFVQILGDFSGSHN--YSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 153 g--l~~~~-~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
+ ++++. ..+.|..|++...... ...+... .....++++++|.++++....+.+.++.
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-----~~P~gi~vd~dG~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-----TNIDDFAFDVEGNLYGATHIYNSVVRIA 239 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-----CCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-----CCCCCeEECCCCCEEEEeCCCCeEEEEC
Confidence 6 44444 4578999996542111 1111111 1356688888887666655555555554
No 258
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.61 E-value=9.3e-05 Score=66.72 Aligned_cols=207 Identities=9% Similarity=-0.033 Sum_probs=124.5
Q ss_pred eEEEeCCC-cEEEEeccCCCeEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 041916 2 PYIYNRDG-TELHCLKEHGAVLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLG 78 (359)
Q Consensus 2 v~iwd~~g-~~~~~l~~h~~~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg 78 (359)
|+.++.++ .....+.....+..++|++.+..|+ +-...+.|..+++..+.....+.........+++.+.+ .++++-
T Consensus 98 I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d 177 (386)
T 3v65_B 98 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD 177 (386)
T ss_dssp EEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEE
T ss_pred ceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEc
Confidence 44455333 2233344455568999998655554 44457899999998665444444444456789998755 455555
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEEcCCceeeEec---cCCceeEEEcCCc
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-E-CKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d-~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g 153 (359)
...+.|.+.++........+.........|+++|.+..|+.+.. . +.|..+++......... -.....|+|+|++
T Consensus 178 ~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~ 257 (386)
T 3v65_B 178 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG 257 (386)
T ss_dssp TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG
T ss_pred CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC
Confidence 66788999988754433333333356789999997776665543 3 68888888753322222 2246899999866
Q ss_pred --eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 --LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 --l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++.+. ..+.|..+|+... .. ..+... .......+++ ..+.++.+....+.+..+.
T Consensus 258 ~~lY~aD~~~~~I~~~d~dG~-~~-~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 258 RRMYWVDAKHHVIERANLDGS-HR-KAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp TEEEEEETTTTEEEEECTTSC-SC-EEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCC-ee-EEEEEC---CCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 55554 4578999986432 22 222221 1124567777 4455555555555555554
No 259
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.61 E-value=0.00019 Score=63.75 Aligned_cols=207 Identities=9% Similarity=-0.033 Sum_probs=124.1
Q ss_pred eEEEeCCCc-EEEEeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEE
Q 041916 2 PYIYNRDGT-ELHCLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLG 78 (359)
Q Consensus 2 v~iwd~~g~-~~~~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg 78 (359)
|+..+.+|. ....+.....+..++|++....|+.+ ...+.|..+++..+.....+.........+++.+.+ .++++-
T Consensus 55 I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d 134 (349)
T 3v64_C 55 IRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD 134 (349)
T ss_dssp EEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEE
T ss_pred eEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEc
Confidence 344453343 33334444556899999866555544 457899999988665444444344556789998755 455555
Q ss_pred eCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEEcCCceeeEecc---CCceeEEEcCCc
Q 041916 79 HSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KE-CKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG 153 (359)
Q Consensus 79 ~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d-~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g 153 (359)
...+.|.+.++........+...-.....|+++|.+..|+.+. .. +.|..+++.......... .....|+++|++
T Consensus 135 ~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~ 214 (349)
T 3v64_C 135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG 214 (349)
T ss_dssp TTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT
T ss_pred CCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC
Confidence 6678899999875443333333335578999999666665554 44 789988887533222222 246899999865
Q ss_pred --eEEEE-cCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 154 --LLAVG-TGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 154 --l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
++.+. ..+.|..+|+... . ...+... .......+++ ..+.++.+-...+.+..+.
T Consensus 215 ~~lY~aD~~~~~I~~~~~dG~-~-~~~~~~~---~~~~P~giav-~~~~ly~td~~~~~V~~~~ 272 (349)
T 3v64_C 215 RRMYWVDAKHHVIERANLDGS-H-RKAVISQ---GLPHPFAITV-FEDSLYWTDWHTKSINSAN 272 (349)
T ss_dssp TEEEEEETTTTEEEEEETTSC-S-CEEEECS---SCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEeCCCC-c-eEEEEeC---CCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence 55554 4578999986432 2 2222211 1124567777 4455555555555555544
No 260
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=5.4e-06 Score=80.39 Aligned_cols=212 Identities=11% Similarity=0.091 Sum_probs=133.6
Q ss_pred eEEEe-CCCcEEEEeccCCC--eEEEEEec--CCCEEEEEec------CCeEEEEECCCCeEEEEEecCC-C--------
Q 041916 2 PYIYN-RDGTELHCLKEHGA--VLKLQFLR--NHFLLASINK------FGQLRYQDVTMGEIVGNFRTGL-G-------- 61 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~--~~~l~~s~--~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~-~-------- 61 (359)
|+.+| .+|+++..+..... ...+..+| .+..+++++. +|.|..+|..+|+.+..+.... .
T Consensus 129 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~ 208 (668)
T 1kv9_A 129 LIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHP 208 (668)
T ss_dssp EEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH
T ss_pred EEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCcccccc
Confidence 56788 78998877665311 01111111 1234444433 5899999999999998886311 0
Q ss_pred ----------------------CeEEEEEcCCCCEEEEEeCCC-------------------eEEEEeCCCCcceEEEec
Q 041916 62 ----------------------RTDVMRVNPFNGVVSLGHSGG-------------------TVTMWKPTTAAPLIKMLC 100 (359)
Q Consensus 62 ----------------------~v~~~~~sp~~~~l~sg~~dg-------------------~v~lwd~~~~~~~~~~~~ 100 (359)
....+++.|++.+++.++.++ .|..+|+.+++.+..++.
T Consensus 209 ~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~ 288 (668)
T 1kv9_A 209 ELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV 288 (668)
T ss_dssp HHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES
T ss_pred ccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeec
Confidence 112468888888888888776 399999999998888764
Q ss_pred --cC-------CCeEEEEEcCCCC---EEEEEeCCCeEEEEEcCCceeeEecc-CC------------------------
Q 041916 101 --HQ-------GPVSALAFHPNGH---LMATSGKECKIKIWDLRKYEVLQTLP-GH------------------------ 143 (359)
Q Consensus 101 --h~-------~~v~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~-~~------------------------ 143 (359)
|. .+.....+..+|. .++.++.+|.++++|..+++.+...+ ..
T Consensus 289 ~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~ 368 (668)
T 1kv9_A 289 TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEK 368 (668)
T ss_dssp STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSS
T ss_pred CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccC
Confidence 22 2222223334665 68889999999999999998773320 00
Q ss_pred --------------ceeEEEcCCc--eEEEE------------------------------------cCCcEEEEcCCCC
Q 041916 144 --------------AKTLDFSQKG--LLAVG------------------------------------TGSFVQILGDFSG 171 (359)
Q Consensus 144 --------------i~~~~~s~~g--l~~~~------------------------------------~d~~i~i~d~~~~ 171 (359)
-..++++|+. +++.. .+|.|..||+.++
T Consensus 369 ~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG 448 (668)
T 1kv9_A 369 EPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQ 448 (668)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTT
T ss_pred CeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCC
Confidence 0126777765 33211 1267888998777
Q ss_pred CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 172 SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 172 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
. ..-...... +.....+...+.++++++.+|.+..|...++.
T Consensus 449 ~-~~W~~~~~~-----~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 449 K-AAWKVPYPT-----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp E-EEEEEEESS-----SCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred c-EEEEccCCC-----CCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 3 332222221 33444556678889999999988887765443
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.51 E-value=1.6e-05 Score=75.65 Aligned_cols=174 Identities=10% Similarity=-0.043 Sum_probs=110.6
Q ss_pred EEEEecCCCEEEEEecC----------------CeEEEEECCCCeEEEEEecCCC---------CeEEEEEc-CCC---C
Q 041916 23 KLQFLRNHFLLASINKF----------------GQLRYQDVTMGEIVGNFRTGLG---------RTDVMRVN-PFN---G 73 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~~d----------------g~i~iwd~~~~~~~~~~~~~~~---------~v~~~~~s-p~~---~ 73 (359)
.+++.+...+++.+..+ +.|..+|..+|+.+..++.... ...-+... .+| .
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~ 324 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK 324 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence 46777777777777654 4899999999999988875321 11112222 466 4
Q ss_pred EEEEEeCCCeEEEEeCCCCcceEEEeccC------------C-Ce--------------------------EEEEEcCCC
Q 041916 74 VVSLGHSGGTVTMWKPTTAAPLIKMLCHQ------------G-PV--------------------------SALAFHPNG 114 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~~~~~~~~~~~h~------------~-~v--------------------------~~i~~~~~~ 114 (359)
.++.++.+|.++++|..+++.+....... + ++ ..++++|+.
T Consensus 325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 404 (599)
T 1w6s_A 325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR 404 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence 67788999999999999998876654211 0 11 245677776
Q ss_pred CEEEEEe---------------------------------------CCCeEEEEEcCCceeeEecc--CCce-eEEEcCC
Q 041916 115 HLMATSG---------------------------------------KECKIKIWDLRKYEVLQTLP--GHAK-TLDFSQK 152 (359)
Q Consensus 115 ~~l~~~~---------------------------------------~d~~i~iwd~~~~~~~~~~~--~~i~-~~~~s~~ 152 (359)
.++++.. .+|.|..||+.+++.+...+ .+.. .......
T Consensus 405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag 484 (599)
T 1w6s_A 405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAG 484 (599)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT
T ss_pred CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecC
Confidence 6655431 34789999999998877762 2222 2122234
Q ss_pred c-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCE
Q 041916 153 G-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDV 200 (359)
Q Consensus 153 g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 200 (359)
+ +++++.|+.|+.||..++ +.+-.+..... ....-+.|..+|+.
T Consensus 485 g~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~g---~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 485 DLVFYGTLDGYLKARDSDTG-DLLWKFKIPSG---AIGYPMTYTHKGTQ 529 (599)
T ss_dssp TEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEE
T ss_pred CEEEEECCCCeEEEEECCCC-CEEEEeeCCCC---cEeccEEEEeCCEE
Confidence 5 677788999999998887 44443332211 11222455667753
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.51 E-value=2.1e-05 Score=74.80 Aligned_cols=136 Identities=10% Similarity=-0.036 Sum_probs=88.1
Q ss_pred eEEEe-CCCcEEEEeccCC-----Ce-EEEEEecCCCEEEEEec------CCeEEEEECCCCeEEEEEecCCCC------
Q 041916 2 PYIYN-RDGTELHCLKEHG-----AV-LKLQFLRNHFLLASINK------FGQLRYQDVTMGEIVGNFRTGLGR------ 62 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~-----~~-~~l~~s~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~------ 62 (359)
|+.+| .+|+++..+.... .+ .+.... ++ .+++++. ++.|..+|..+|+.+..+......
T Consensus 127 l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~ 204 (571)
T 2ad6_A 127 LLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLA 204 (571)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred EEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccC
Confidence 56678 7888877655332 12 111121 34 4555554 789999999999999887643211
Q ss_pred --------------------------------eEEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcc
Q 041916 63 --------------------------------TDVMRVNPFNGVVSLGHSG----------------GTVTMWKPTTAAP 94 (359)
Q Consensus 63 --------------------------------v~~~~~sp~~~~l~sg~~d----------------g~v~lwd~~~~~~ 94 (359)
...+++.+....++.++.+ +.|..+|+.+++.
T Consensus 205 p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~ 284 (571)
T 2ad6_A 205 KDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMA 284 (571)
T ss_dssp TTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCE
T ss_pred cccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcE
Confidence 0135666766677666532 3699999999998
Q ss_pred eEEEecc--C--------CCeEEEEEcCCCC---EEEEEeCCCeEEEEEcCCceeeEec
Q 041916 95 LIKMLCH--Q--------GPVSALAFHPNGH---LMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 95 ~~~~~~h--~--------~~v~~i~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
+..++.. . .++. +...++|+ .++.++.+|.+.++|..+++.+..+
T Consensus 285 ~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 285 KWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp EEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 8877632 1 2221 22224674 5778889999999999999877654
No 263
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.48 E-value=1.6e-05 Score=75.76 Aligned_cols=175 Identities=7% Similarity=-0.020 Sum_probs=110.6
Q ss_pred EEEEEecCCCEEEEEec--------------------C----CeEEEEECCCCeEEEEEec--CC--------CCeEEEE
Q 041916 22 LKLQFLRNHFLLASINK--------------------F----GQLRYQDVTMGEIVGNFRT--GL--------GRTDVMR 67 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~--------------------d----g~i~iwd~~~~~~~~~~~~--~~--------~~v~~~~ 67 (359)
..+++.|...+++.+.. | +.|..+|..+|+.+..++. |. .++. +.
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~ 327 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FD 327 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EE
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Ee
Confidence 34677787777776653 2 6899999999999988864 21 1221 22
Q ss_pred Ec-CCCC---EEEEEeCCCeEEEEeCCCCcceEEEeccCC-------------C--------------------------
Q 041916 68 VN-PFNG---VVSLGHSGGTVTMWKPTTAAPLIKMLCHQG-------------P-------------------------- 104 (359)
Q Consensus 68 ~s-p~~~---~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~-------------~-------------------------- 104 (359)
.. .+|+ .++.++.+|.++++|..+++.+..+..... +
T Consensus 328 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~ 407 (582)
T 1flg_A 328 YKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPP 407 (582)
T ss_dssp EECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSC
T ss_pred eecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcC
Confidence 21 4663 788899999999999999988766543210 0
Q ss_pred ------eEEEEEcCCCCEEEEEe---------------------------------CCCeEEEEEcCCceeeEecc--CC
Q 041916 105 ------VSALAFHPNGHLMATSG---------------------------------KECKIKIWDLRKYEVLQTLP--GH 143 (359)
Q Consensus 105 ------v~~i~~~~~~~~l~~~~---------------------------------~d~~i~iwd~~~~~~~~~~~--~~ 143 (359)
-..++++|+..++++.. .+|.|..||+.+++.+..++ .+
T Consensus 408 ~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~ 487 (582)
T 1flg_A 408 FLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP 487 (582)
T ss_dssp TTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC
T ss_pred CccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC
Confidence 01356677655555432 25789999999999877662 22
Q ss_pred cee-EEEcCCc-eEEEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 144 AKT-LDFSQKG-LLAVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 144 i~~-~~~s~~g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
+.. ......+ +++++.|+.|+.||..++ +.+-.+..... ..-.-+.|..+|+..
T Consensus 488 ~~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~g---~~a~P~~y~~~G~qY 543 (582)
T 1flg_A 488 LWAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGSG---IVSPPITWEQDGEQY 543 (582)
T ss_dssp CCSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSC---CCSCCEEEEETTEEE
T ss_pred CcccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCCC---cccCceEEEECCEEE
Confidence 222 1122355 677788999999998887 44444433221 111225566777643
No 264
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.46 E-value=6.2e-05 Score=63.34 Aligned_cols=165 Identities=10% Similarity=0.090 Sum_probs=109.3
Q ss_pred eEEEeCCCcEEEEe--ccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE---EEEEe------cCCCCeEEEEEcC
Q 041916 2 PYIYNRDGTELHCL--KEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI---VGNFR------TGLGRTDVMRVNP 70 (359)
Q Consensus 2 v~iwd~~g~~~~~l--~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~------~~~~~v~~~~~sp 70 (359)
|+..|.+|..+..+ .+..+.-.+++.+++.++++.-.++.+.++++..... +.... ..+...-.|+|+|
T Consensus 51 I~~ld~~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~ 130 (255)
T 3qqz_A 51 IVEMTTNGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR 130 (255)
T ss_dssp EEEEETTCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET
T ss_pred EEEEeCCCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeC
Confidence 45667568877776 3445668899999988777766678999998865432 23332 1233468999999
Q ss_pred CCCEEEEEeCCCeEEEEeCC---CCcceEEEe-------ccCCCeEEEEEcCCC-CEEEEEeCCCeEEEEEcCCceeeEe
Q 041916 71 FNGVVSLGHSGGTVTMWKPT---TAAPLIKML-------CHQGPVSALAFHPNG-HLMATSGKECKIKIWDLRKYEVLQT 139 (359)
Q Consensus 71 ~~~~l~sg~~dg~v~lwd~~---~~~~~~~~~-------~h~~~v~~i~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~ 139 (359)
.+..|+++.......+|.+. ....+..+. .+...+.+++++|.. ++++.......|..+|.. ++++..
T Consensus 131 ~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~ 209 (255)
T 3qqz_A 131 QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGE 209 (255)
T ss_dssp TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEE
T ss_pred CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEE
Confidence 98776666655455555443 111222221 123357899999954 455556667889999976 455544
Q ss_pred c--c-C---------CceeEEEcCCc-eEEEEcCCcEEEEc
Q 041916 140 L--P-G---------HAKTLDFSQKG-LLAVGTGSFVQILG 167 (359)
Q Consensus 140 ~--~-~---------~i~~~~~s~~g-l~~~~~d~~i~i~d 167 (359)
+ . + ....|+|.++| ++.++..+.++.|.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFT 250 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEE
T ss_pred EEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEE
Confidence 4 2 1 45889999999 88888888888775
No 265
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.42 E-value=0.00098 Score=60.27 Aligned_cols=197 Identities=10% Similarity=-0.045 Sum_probs=117.0
Q ss_pred EeccCCCeEEEEEecCCCEEEEE-ecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEE
Q 041916 14 CLKEHGAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMW 87 (359)
Q Consensus 14 ~l~~h~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lw 87 (359)
.+.....+..|+|++.+..|+.+ ...+.|..+++... .....+......+..+++.+. +.++++-...+.|.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~ 186 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 186 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEE
Confidence 34444556999999866555554 45688999998752 223333334456789999884 4555566677899999
Q ss_pred eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEE-c
Q 041916 88 KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVG-T 159 (359)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~-~ 159 (359)
++........+...-.....|+++|.+.+|+.+.. .+.|...++.......... .....|+++|++ ++.+. .
T Consensus 187 ~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 187 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp CTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred eCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence 98755443333333445789999997767666553 3689988887543322222 356899999866 55554 4
Q ss_pred CCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 160 GSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 160 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.+.|..+|+... ....+..... ......++++ ..+.++.+....+.+..+.
T Consensus 267 ~~~I~~~d~dG~--~~~~~~~~~~-~l~~P~gl~v-~~~~lywtd~~~~~V~~~~ 317 (400)
T 3p5b_L 267 LHSISSIDVNGG--NRKTILEDEK-RLAHPFSLAV-FEDKVFWTDIINEAIFSAN 317 (400)
T ss_dssp TTEEEEEETTSC--CCEEEEECSS-TTSSEEEEEE-ETTEEEEEESSSCSEEEEE
T ss_pred CCEEEEEeCCCC--ccEEEEeCCC-CCCCCEEEEE-eCCEEEEecCCCCeEEEEE
Confidence 578999996432 2222222110 1113456666 2334444444445444444
No 266
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.40 E-value=5.1e-05 Score=72.26 Aligned_cols=136 Identities=12% Similarity=0.052 Sum_probs=88.7
Q ss_pred eEEEe-CCCcEEEEeccCC-----Ce-EEEEEecCCCEEEEEe------cCCeEEEEECCCCeEEEEEecCCCCe-----
Q 041916 2 PYIYN-RDGTELHCLKEHG-----AV-LKLQFLRNHFLLASIN------KFGQLRYQDVTMGEIVGNFRTGLGRT----- 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~-----~~-~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v----- 63 (359)
|+-+| .+|+++....... .+ ....+. ++ .+++++ .+|.|+-+|..+|+.+..+.......
T Consensus 133 l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~ 210 (599)
T 1w6s_A 133 VAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLA 210 (599)
T ss_dssp EEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBC
T ss_pred EEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccc
Confidence 45567 6788776654332 22 111221 44 445444 37999999999999998876432110
Q ss_pred ---------------------------------EEEEEcCCCCEEEEEeCC----------------CeEEEEeCCCCcc
Q 041916 64 ---------------------------------DVMRVNPFNGVVSLGHSG----------------GTVTMWKPTTAAP 94 (359)
Q Consensus 64 ---------------------------------~~~~~sp~~~~l~sg~~d----------------g~v~lwd~~~~~~ 94 (359)
..+++.+...+++.++.+ +.|..+|+.+++.
T Consensus 211 p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~ 290 (599)
T 1w6s_A 211 SDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEA 290 (599)
T ss_dssp TTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCE
T ss_pred cccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCce
Confidence 134566777777777665 3899999999998
Q ss_pred eEEEeccC----------CCeEEEEEc-CCC---CEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 95 LIKMLCHQ----------GPVSALAFH-PNG---HLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 95 ~~~~~~h~----------~~v~~i~~~-~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
+..++... .++. +... .+| ..++.++.+|.+.++|..+++++...
T Consensus 291 ~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 291 KFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence 88776322 1221 2222 467 46777889999999999999877654
No 267
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.40 E-value=0.00027 Score=69.94 Aligned_cols=180 Identities=6% Similarity=-0.018 Sum_probs=118.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe----cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR----TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
+.++...+++.+|..|+.++-|.+||..+++...... .+...|.++...++|.+.+.. .+| |.+||..++...
T Consensus 408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~- 484 (795)
T 4a2l_A 408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFT- 484 (795)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEE-
T ss_pred EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEE-
Confidence 5888888888856667776779999998876543221 123578999988888866654 454 888998776432
Q ss_pred EEec-------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe-------c-cCCceeEEEcCCc-eEEEEcC
Q 041916 97 KMLC-------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT-------L-PGHAKTLDFSQKG-LLAVGTG 160 (359)
Q Consensus 97 ~~~~-------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~-------~-~~~i~~~~~s~~g-l~~~~~d 160 (359)
.+.. ....|.++..+++|.+.+... +-|..||..++..... + ...|.++...++| +.+++.+
T Consensus 485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~ 562 (795)
T 4a2l_A 485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKASILPVSNVTKLFTNCIYEASNGIIWVGTRE 562 (795)
T ss_dssp ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECCCSCSCGGGGSCEEEEEECTTSCEEEEESS
T ss_pred EccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC
Confidence 2211 235789999999998666544 4588899877654111 1 2357889999999 6666655
Q ss_pred CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 161 SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 161 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
-|..||..+. ....+....+.+...|.++...++|.+.+++ ..|.
T Consensus 563 -Gl~~~d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl 607 (795)
T 4a2l_A 563 -GFYCFNEKDK--QIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRGI 607 (795)
T ss_dssp -CEEEEETTTT--EEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTEE
T ss_pred -CceeECCCCC--cEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCce
Confidence 6888886543 2333332222244468888888888766554 4554
No 268
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.33 E-value=0.00019 Score=68.34 Aligned_cols=138 Identities=12% Similarity=0.069 Sum_probs=88.3
Q ss_pred eEEEe-CCCcEEEEeccCC-----Ce-EEEEEecC---CC-EEEEEe------cCCeEEEEECCCCeEEEEEecCCCCe-
Q 041916 2 PYIYN-RDGTELHCLKEHG-----AV-LKLQFLRN---HF-LLASIN------KFGQLRYQDVTMGEIVGNFRTGLGRT- 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~-----~~-~~l~~s~~---~~-~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~v- 63 (359)
|+-+| .+|+++-.+.... .+ ....+..+ ++ .+++++ .++.|.-+|..+|+.+.........+
T Consensus 129 l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~ 208 (582)
T 1flg_A 129 VVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMG 208 (582)
T ss_dssp EEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEE
T ss_pred EEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccc
Confidence 55677 7888876665432 11 11122222 33 555554 37899999999999888765321000
Q ss_pred ----------------------------------------EEEEEcCCCCEEEEEeC--------------------C--
Q 041916 64 ----------------------------------------DVMRVNPFNGVVSLGHS--------------------G-- 81 (359)
Q Consensus 64 ----------------------------------------~~~~~sp~~~~l~sg~~--------------------d-- 81 (359)
..+++.|...+++.+.. |
T Consensus 209 p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~ 288 (582)
T 1flg_A 209 RLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSL 288 (582)
T ss_dssp EETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCT
T ss_pred cccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCc
Confidence 13456676677776653 2
Q ss_pred --CeEEEEeCCCCcceEEEec--cC--------CCeEEEEEc-CCCC---EEEEEeCCCeEEEEEcCCceeeEec
Q 041916 82 --GTVTMWKPTTAAPLIKMLC--HQ--------GPVSALAFH-PNGH---LMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 82 --g~v~lwd~~~~~~~~~~~~--h~--------~~v~~i~~~-~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
+.|..+|+.+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+++.+..+
T Consensus 289 ~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~ 362 (582)
T 1flg_A 289 YTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF 362 (582)
T ss_dssp TCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence 6899999999999888763 32 1221 1222 4674 6888999999999999999877554
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=0.00033 Score=64.03 Aligned_cols=129 Identities=11% Similarity=0.027 Sum_probs=81.5
Q ss_pred eEEEeCCCcEEEEe-ccCCCeEEEEEecCCCEEEEEec-CC----eEEEEECCCCeEE--EEEecCCCCeEEEEEcC-CC
Q 041916 2 PYIYNRDGTELHCL-KEHGAVLKLQFLRNHFLLASINK-FG----QLRYQDVTMGEIV--GNFRTGLGRTDVMRVNP-FN 72 (359)
Q Consensus 2 v~iwd~~g~~~~~l-~~h~~~~~l~~s~~~~~l~s~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~v~~~~~sp-~~ 72 (359)
|+.+|..+..+..+ .....+..++|++++++|+++.. ++ .+.+++.. +... ..+.. ......++++| ++
T Consensus 161 I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g 238 (430)
T 3tc9_A 161 TRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPING 238 (430)
T ss_dssp EEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTC
T ss_pred EEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCC
Confidence 56777555444444 33344699999999996666554 11 34445533 3221 22322 23467899999 67
Q ss_pred CEEEEEeCCCeEEEEeCCCCcceEEEec-cCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAPLIKMLC-HQGPVSALAFHPNGHLMATS-GKECKIKIWDLR 132 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~ 132 (359)
.++++-..++.|..+++..+........ .....+.|+|+|+|++|+.+ ...+.|..+|..
T Consensus 239 ~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 239 ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 7777777788999999886643222221 12345789999999965555 467889998765
No 270
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.32 E-value=0.0008 Score=58.36 Aligned_cols=148 Identities=9% Similarity=0.037 Sum_probs=104.1
Q ss_pred EEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEecC-----C--CCeEEEEE---cCCCCEEEEEe-----------
Q 041916 22 LKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRTG-----L--GRTDVMRV---NPFNGVVSLGH----------- 79 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-----~--~~v~~~~~---sp~~~~l~sg~----------- 79 (359)
-++.|.+....|..++ ..++|..||...+......-.. . ..+..|.| .|++.++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 7899998655555555 6899999999866443332211 1 13579999 68887877644
Q ss_pred --CCCeEEEEeCC---CCcceEEEe--cc-----------CCCeEEEEEcCCCCEEEEEeCC-CeEEEEEcCCceeeEec
Q 041916 80 --SGGTVTMWKPT---TAAPLIKML--CH-----------QGPVSALAFHPNGHLMATSGKE-CKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 80 --~dg~v~lwd~~---~~~~~~~~~--~h-----------~~~v~~i~~~~~~~~l~~~~~d-~~i~iwd~~~~~~~~~~ 140 (359)
.+..|..||+. +++.+.... .. ......+++.++|+..++++.. +.|..+|.... .+..+
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~ 174 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTF 174 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeee
Confidence 26779999999 787766554 11 1247899999999999998888 88887777643 22222
Q ss_pred ---c------CCceeEEEcCCc--eEEEEcCCcEEEEcCCC
Q 041916 141 ---P------GHAKTLDFSQKG--LLAVGTGSFVQILGDFS 170 (359)
Q Consensus 141 ---~------~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~ 170 (359)
. ...+.|+++|+| |++...++.|..+|+..
T Consensus 175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1 125799999999 55555689999999763
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.30 E-value=0.00018 Score=65.82 Aligned_cols=208 Identities=10% Similarity=0.006 Sum_probs=116.8
Q ss_pred eEEEeC-CCcEEEEeccCCCeEEEEEecCCCEEEEEecC---C-eEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCE
Q 041916 2 PYIYNR-DGTELHCLKEHGAVLKLQFLRNHFLLASINKF---G-QLRYQDVTMGEI-VGNFRTGLGRTDVMRVNP-FNGV 74 (359)
Q Consensus 2 v~iwd~-~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~d---g-~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp-~~~~ 74 (359)
|+.+|. +|.....+.....+.+++|+++|.++++.... . .+..++...+.. ...+. .......++++| ++.+
T Consensus 164 I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~l 242 (433)
T 4hw6_A 164 FRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKI 242 (433)
T ss_dssp EEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCE
T ss_pred EEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeE
Confidence 667784 55554444444446999999999944443311 1 233333322211 01222 234467789999 6777
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEe--ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcC--Ccee--eEec-------
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKML--CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLR--KYEV--LQTL------- 140 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~--~~~~--~~~~------- 140 (359)
+++-..++.|..+|+.++.....+. +....-..|+|+|+|++|+.+. ..+.|..+|.. ++.. ...+
T Consensus 243 yv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~ 322 (433)
T 4hw6_A 243 YYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSP 322 (433)
T ss_dssp EECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCC
T ss_pred EEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCC
Confidence 6666678899999998776523322 1122234699999999665554 56789998865 2211 1111
Q ss_pred -----------cCCceeEEE---------cCCc-eEEEEc-CCcEEEEcCCCCCCccceeecccC------C--------
Q 041916 141 -----------PGHAKTLDF---------SQKG-LLAVGT-GSFVQILGDFSGSHNYSRYMGHSM------V-------- 184 (359)
Q Consensus 141 -----------~~~i~~~~~---------s~~g-l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~------~-------- 184 (359)
-.....+++ .++| ++++.. .+.|+.++. .+ .+..+.+... .
T Consensus 323 g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G--~v~t~~G~g~~~~~G~~dG~~~~~~ 399 (433)
T 4hw6_A 323 GWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG--RVTTYAGRGNSREWGYVDGELRSQA 399 (433)
T ss_dssp CCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS--EEEEEECCCTTCSSCCBCEETTTTC
T ss_pred ccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC--CEEEEEeCCCCCccccCCCcccccc
Confidence 012567898 7777 666554 468888883 33 2222222100 0
Q ss_pred CCcceEEEEEe-eCCCEEEEEcCCCeEEEE
Q 041916 185 KGYQIGKVSFR-PYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 185 ~~~~v~~~~~~-p~~~~l~~~~~dg~~~i~ 213 (359)
.-.....|+++ +++.++++-..+..++.+
T Consensus 400 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 400 LFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp BCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 01236788998 566555544444444443
No 272
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.30 E-value=0.00013 Score=66.69 Aligned_cols=147 Identities=12% Similarity=0.120 Sum_probs=92.6
Q ss_pred eEEEEEecC--CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCC---C-eEEEEeCCCCcc
Q 041916 21 VLKLQFLRN--HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSG---G-TVTMWKPTTAAP 94 (359)
Q Consensus 21 ~~~l~~s~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~d---g-~v~lwd~~~~~~ 94 (359)
+..++|+|+ +..|+.+...+.|+.+|+.++..... ......+.+++|+++|.++++...+ . .+...+...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence 489999984 44455555448999999987775543 3345568999999999955544321 1 233344322211
Q ss_pred -eEEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCceeeEec----c-CCceeEEEcCCc--eEEEE-cCCcEE
Q 041916 95 -LIKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEVLQTL----P-GHAKTLDFSQKG--LLAVG-TGSFVQ 164 (359)
Q Consensus 95 -~~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~----~-~~i~~~~~s~~g--l~~~~-~d~~i~ 164 (359)
...+. .-.....++++| +|.++++-..++.|+.+|..++.....+ . .....++|+|+| ++.+. ..+.|.
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 11222 223346789999 6766666667789999999876652222 1 123569999999 55554 457888
Q ss_pred EEcCC
Q 041916 165 ILGDF 169 (359)
Q Consensus 165 i~d~~ 169 (359)
.++..
T Consensus 299 ~~~~d 303 (433)
T 4hw6_A 299 RVDYN 303 (433)
T ss_dssp EEEBC
T ss_pred EEeCC
Confidence 87743
No 273
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.30 E-value=0.00077 Score=66.70 Aligned_cols=182 Identities=13% Similarity=0.055 Sum_probs=119.0
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEec-------CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRT-------GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA 93 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~ 93 (359)
+.++...++|.+- .|+.++-|.+|+..++... .+.. ....|.++...++|.+.+ |+.++-|..||..++.
T Consensus 312 i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~ 388 (795)
T 4a2l_A 312 VRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQR 388 (795)
T ss_dssp EEEEEECTTSCEE-EEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEE-EESSSCEEEECTTTCC
T ss_pred EEEEEEeCCcCEE-EEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCc
Confidence 5888888888754 4666677889987655432 2221 234689999988887655 6677669999987664
Q ss_pred ceEEEec--------cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec-------cCCceeEEEcCCc-eEEE
Q 041916 94 PLIKMLC--------HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL-------PGHAKTLDFSQKG-LLAV 157 (359)
Q Consensus 94 ~~~~~~~--------h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-------~~~i~~~~~s~~g-l~~~ 157 (359)
....... ....|.++...++|..|..|+.++-|.+||..+++...-. ...|.++...++| +.++
T Consensus 389 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig 468 (795)
T 4a2l_A 389 FTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG 468 (795)
T ss_dssp EEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE
T ss_pred EEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE
Confidence 3222111 2357899999999985667777778999999876543321 2357889888888 7777
Q ss_pred EcCCcEEEEcCCCCCCccceeecc---cCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 158 GTGSFVQILGDFSGSHNYSRYMGH---SMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 158 ~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
+. +-|.+||..++ ....+... .......|.++...++|.+.+... .|.
T Consensus 469 t~-~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl 519 (795)
T 4a2l_A 469 TL-SALVRFNPEQR--SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EGL 519 (795)
T ss_dssp ES-SCEEEEETTTT--EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SCE
T ss_pred ec-CceeEEeCCCC--eEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cce
Confidence 76 56888986544 12222111 000223688888888887665544 553
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=0.00046 Score=68.20 Aligned_cols=183 Identities=13% Similarity=0.035 Sum_probs=117.6
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR--TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
+.++...+++.+.+ |+.++-|..+|..+++...... .....|.++...+++.+.+ |+. +-|.+||..++......
T Consensus 409 v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 409 VLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHY 485 (781)
T ss_dssp EEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEE
T ss_pred eEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecc
Confidence 47787777777555 5666678999988776433221 1345788999888876555 444 45889998876543332
Q ss_pred ecc-----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc-eEEEEcCCcEEEE
Q 041916 99 LCH-----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG-LLAVGTGSFVQIL 166 (359)
Q Consensus 99 ~~h-----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g-l~~~~~d~~i~i~ 166 (359)
... ...|.++...++|.+.+. +.++-|..||..+.+...-. ...|.++...++| +..++.+|.+..|
T Consensus 486 ~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~ 564 (781)
T 3v9f_A 486 DTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFP 564 (781)
T ss_dssp CTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEES
T ss_pred cCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEE
Confidence 222 357899999999886554 44334788998766533221 2357889999999 7777776655889
Q ss_pred cCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeE
Q 041916 167 GDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWS 210 (359)
Q Consensus 167 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~ 210 (359)
|..++ ....+....+.+...|.++...++|.+.++ +.+|..
T Consensus 565 d~~~~--~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~Gl~ 605 (781)
T 3v9f_A 565 SARNF--DYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTGIS 605 (781)
T ss_dssp CTTTC--CCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSCEE
T ss_pred CCCCC--cEEEccccCCCCCceEEEEEECCCCCEEEE-cCCceE
Confidence 86554 233333222223446888888888875544 566643
No 275
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.24 E-value=8.9e-05 Score=67.85 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=96.3
Q ss_pred CeEEEEEec-CCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CC----eEEEEeCCCCc
Q 041916 20 AVLKLQFLR-NHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-GG----TVTMWKPTTAA 93 (359)
Q Consensus 20 ~~~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-dg----~v~lwd~~~~~ 93 (359)
.+..|+|+| ++..|+++...+.|+.+|+.++... .+.........++|+++++.|+++.. ++ .+.+++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~-~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS-TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE-EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE-EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 358899998 4555666655588999999876644 33335566889999999995555543 22 34444432 32
Q ss_pred ce--EEEeccCCCeEEEEEcC-CCCEEEEEeCCCeEEEEEcCCcee--eEecc--CCceeEEEcCCc--eEEEE-cCCcE
Q 041916 94 PL--IKMLCHQGPVSALAFHP-NGHLMATSGKECKIKIWDLRKYEV--LQTLP--GHAKTLDFSQKG--LLAVG-TGSFV 163 (359)
Q Consensus 94 ~~--~~~~~h~~~v~~i~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~--~~i~~~~~s~~g--l~~~~-~d~~i 163 (359)
.. ..+.. .....+++++| +|.++++-..++.|..||..++.. +.... .....++|+|+| ++.+. ..+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 22 23322 23356789999 677666666778999999987654 22222 347899999999 45554 45788
Q ss_pred EEEcCC
Q 041916 164 QILGDF 169 (359)
Q Consensus 164 ~i~d~~ 169 (359)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 888743
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.22 E-value=0.0022 Score=55.96 Aligned_cols=190 Identities=10% Similarity=-0.037 Sum_probs=115.0
Q ss_pred CeEEEEEecCCCEE-EEEecCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceE
Q 041916 20 AVLKLQFLRNHFLL-ASINKFGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 20 ~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
.+..++|++.+..| .+-...+.|..+++..+.. ...+......+..+++.+.+ .++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 34788999865444 4444578899999876532 22233333456789998754 555555667899999987543333
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEE-cCCcEEEEcC
Q 041916 97 KMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVG-TGSFVQILGD 168 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~-~d~~i~i~d~ 168 (359)
.+.........|+++|.+..|+.+.. .+.|..+++.......... .....|+++|++ ++.+. ..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 33234455789999997667666653 5788888886432222222 246899999865 55554 4578999986
Q ss_pred CCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 169 FSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
... ....+... .......+++. .+.++.+-...+.+..+..
T Consensus 196 dG~--~~~~~~~~---~~~~P~glav~-~~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 196 DGT--NRQAVVKG---SLPHPFALTLF-EDILYWTDWSTHSILACNK 236 (318)
T ss_dssp TSC--SCEEEECS---CCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred CCC--ceEEEecC---CCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence 432 22222221 11245667765 3344445555555555554
No 277
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.18 E-value=0.00078 Score=58.94 Aligned_cols=165 Identities=12% Similarity=0.136 Sum_probs=109.9
Q ss_pred eEEEeCCCcEEEEeccCCCeEEEEEecC----CC---EEEEEe-c--CCeEEEEEC--CCCeEEEEEec-------CCCC
Q 041916 2 PYIYNRDGTELHCLKEHGAVLKLQFLRN----HF---LLASIN-K--FGQLRYQDV--TMGEIVGNFRT-------GLGR 62 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~~~~l~~s~~----~~---~l~s~~-~--dg~i~iwd~--~~~~~~~~~~~-------~~~~ 62 (359)
+++||.+|+++..+.. ..++.+..-|+ |. ++++.. . +++|.+|++ .++. +..+.. ....
T Consensus 52 L~Vydl~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~ 129 (355)
T 3amr_A 52 LVVYSLDGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINE 129 (355)
T ss_dssp EEEEETTSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSS
T ss_pred EEEEcCCCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCC
Confidence 6899999999999875 34455655552 32 223333 3 579999977 3443 444421 1144
Q ss_pred eEEEEE--cCC-CC-EEEEEeCCCeEEEEeCC---C----CcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 041916 63 TDVMRV--NPF-NG-VVSLGHSGGTVTMWKPT---T----AAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL 131 (359)
Q Consensus 63 v~~~~~--sp~-~~-~l~sg~~dg~v~lwd~~---~----~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~ 131 (359)
+..+|+ +|. +. ++++...+|.+..|++. . .+.+.+|.. .+.+..+++.+....|+.+-++.-|..||.
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred eeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 566777 774 43 67788889999999883 2 244566653 457889999998899999999988888886
Q ss_pred C-----CceeeEec-----cCCceeEEE--cCCc---eEEEE-cCCcEEEEcCC
Q 041916 132 R-----KYEVLQTL-----PGHAKTLDF--SQKG---LLAVG-TGSFVQILGDF 169 (359)
Q Consensus 132 ~-----~~~~~~~~-----~~~i~~~~~--s~~g---l~~~~-~d~~i~i~d~~ 169 (359)
. +++.+..+ ...+..|++ .++| +++++ .++.+.+||..
T Consensus 209 ~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 209 EPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp STTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 5 34555554 235677777 4443 55555 45799999964
No 278
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.16 E-value=0.0047 Score=60.71 Aligned_cols=156 Identities=11% Similarity=-0.001 Sum_probs=100.0
Q ss_pred eccCCCeEEEEEecCCCEE-EEEecCCeEEEEECCCC----eEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEe
Q 041916 15 LKEHGAVLKLQFLRNHFLL-ASINKFGQLRYQDVTMG----EIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWK 88 (359)
Q Consensus 15 l~~h~~~~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd 88 (359)
+.....+..|+|++....| ++-...+.|+.+++... .....+......+..|++.+.+. ++++-...+.|.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ 499 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 499 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEe
Confidence 3444556899999865444 44445678999998742 22333443455678899998774 555556778999999
Q ss_pred CCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEc-C
Q 041916 89 PTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGT-G 160 (359)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~-d 160 (359)
+........+...-.....|+++|.+.+|+.+.. .+.|...++........+. ..+..|++++.+ |+.+.. .
T Consensus 500 ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~ 579 (791)
T 3m0c_C 500 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 579 (791)
T ss_dssp TTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCC
Confidence 8754333333334445789999998667666653 2689998887543333232 357899999765 555543 4
Q ss_pred CcEEEEcCCC
Q 041916 161 SFVQILGDFS 170 (359)
Q Consensus 161 ~~i~i~d~~~ 170 (359)
+.|..+++..
T Consensus 580 ~~I~~~d~dG 589 (791)
T 3m0c_C 580 HSISSIDVNG 589 (791)
T ss_dssp TEEEEEETTS
T ss_pred CcEEEEecCC
Confidence 6899998643
No 279
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.09 E-value=0.0015 Score=58.76 Aligned_cols=151 Identities=12% Similarity=0.035 Sum_probs=94.9
Q ss_pred eEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-SG-GTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-~d-g~v~lwd~~~~~~~~~ 97 (359)
+..+++.+.+. ++++-...+.|.+.++........+.........+++.|.+..|+.+. .. +.|..+++........
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 240 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII 240 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence 47889987554 445545567899988875443333444446689999999766555443 44 6888888764433322
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGDFSG 171 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~ 171 (359)
....-...+.|+|+|++..|+.+. ..+.|..+|+........+ ...+..|++..+.++.+. ..+.|..++..++
T Consensus 241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence 223334468999998777766654 5678999998753322222 235677888444444444 4578888875455
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.07 E-value=0.0038 Score=54.69 Aligned_cols=180 Identities=17% Similarity=0.164 Sum_probs=102.6
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCcceEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF-RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP--TTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~--~~~~~~~~ 97 (359)
...+.+.+++..++++. +|.|.. ..+.|+.-..+ ......+..+++.|++.+++++...+..+-+|- .+.+.+.
T Consensus 124 ~~~i~~~~~~~~~~~~~-~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~- 200 (327)
T 2xbg_A 124 PRLIKALGNGSAEMITN-VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN- 200 (327)
T ss_dssp EEEEEEEETTEEEEEET-TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE-
T ss_pred eEEEEEECCCCEEEEeC-CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC-
Confidence 37788777777666654 554422 22334322222 234557889999999888877654444444442 2222221
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--c-----CCceeEEEcCCc-eEEEEcCCcEEEEcCC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--P-----GHAKTLDFSQKG-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--~-----~~i~~~~~s~~g-l~~~~~d~~i~i~d~~ 169 (359)
......+..+++.+++..+ .++.+|.+.+.+...+..-..+ + ..+.++.+.+++ +++++.++.|.. ...
T Consensus 201 -~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~-S~D 277 (327)
T 2xbg_A 201 -RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLC-SQD 277 (327)
T ss_dssp -CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEE-ESS
T ss_pred -CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEE-eCC
Confidence 2345678899999988765 4556788887753323322222 1 236788899888 888888887743 322
Q ss_pred CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
.+ .....+..... ....+.++.|.+++. +++++.+|.
T Consensus 278 gG-~tW~~~~~~~~-~~~~~~~v~~~~~~~-~~~~G~~G~ 314 (327)
T 2xbg_A 278 GG-QTWQQDVDVKK-VPSNFYKILFFSPDQ-GFILGQKGI 314 (327)
T ss_dssp TT-SSCEECGGGTT-SSSCCCEEEEEETTE-EEEECSTTE
T ss_pred CC-cccEEcCccCC-CCCCeEEEEEECCCc-eEEEcCCce
Confidence 23 33333322100 112578899987655 445556663
No 281
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.06 E-value=0.0011 Score=65.49 Aligned_cols=181 Identities=9% Similarity=-0.051 Sum_probs=115.2
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNF---RTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
+.++...++|.+. .|+.++-|.+||..++...... ......|.++...+++.+.+ |+.++-|..+|..+++. ..
T Consensus 365 v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~-~~ 441 (781)
T 3v9f_A 365 VSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKF-QI 441 (781)
T ss_dssp EEEEEECTTSCEE-EEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEE-EE
T ss_pred eEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcE-EE
Confidence 4788887777654 4555566889998755432111 12335688998888877655 66666788999876643 22
Q ss_pred Ee---ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec--------cCCceeEEEcCCc-eEEEEcCCcEEE
Q 041916 98 ML---CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL--------PGHAKTLDFSQKG-LLAVGTGSFVQI 165 (359)
Q Consensus 98 ~~---~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--------~~~i~~~~~s~~g-l~~~~~d~~i~i 165 (359)
+. .....|.++...++|.+.+ |+. +-|..||..+++..... ...|.++...++| +.+++.++-|..
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGI 519 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEE
T ss_pred eccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEE
Confidence 22 1345789999988886544 455 56899998875432221 2457889999999 777777566888
Q ss_pred EcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCe
Q 041916 166 LGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGW 209 (359)
Q Consensus 166 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~ 209 (359)
||..++ ....+......+...|.++...++|.+.+... +|.
T Consensus 520 ~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Gl 560 (781)
T 3v9f_A 520 YTPDMQ--LVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGL 560 (781)
T ss_dssp ECTTCC--EEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEE
T ss_pred EeCCCC--eEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCc
Confidence 986443 22223221111344688998888887655443 654
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.06 E-value=0.0018 Score=57.32 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=94.3
Q ss_pred eEEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEeCC-CeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVS-LGHSG-GTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-sg~~d-g~v~lwd~~~~~~~~~ 97 (359)
+..+++.+.+ .+.++-...+.|.+.++........+.........++++|.+..|+ +-..+ +.|..+++... ....
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~ 196 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRI 196 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEE
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEE
Confidence 4789999855 4445555578999999875443333334445678999999665544 44444 78998887643 3333
Q ss_pred E-eccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916 98 M-LCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGDFSG 171 (359)
Q Consensus 98 ~-~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~ 171 (359)
+ ...-...+.|+|+|++..|+.+. ..+.|..+|+........+ -..+..+++..+.++.+. ..+.|..++..++
T Consensus 197 ~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 197 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp SCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence 3 22233468999999777766654 5678999998753322222 235677777444454444 4577888874454
No 283
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.06 E-value=0.0062 Score=54.95 Aligned_cols=152 Identities=11% Similarity=-0.013 Sum_probs=98.1
Q ss_pred CeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCcceE
Q 041916 20 AVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS--GGTVTMWKPTTAAPLI 96 (359)
Q Consensus 20 ~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~--dg~v~lwd~~~~~~~~ 96 (359)
.+..+++.+. +.+.++-...+.|.+.++........+.........|++.|.+..|+.... .+.|...++.......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 3478999884 455555556789999998765544444444556889999997666555542 3778888886443333
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec-----cCCceeEEEcCCceEEEE-cCCcEEEEcCC
Q 041916 97 KMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL-----PGHAKTLDFSQKGLLAVG-TGSFVQILGDF 169 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~ 169 (359)
.+...-...+.|+++|++..|+.+. ..+.|..+|+......... -.....|++..+.++.+. ..+.|..+|..
T Consensus 240 ~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 240 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESS
T ss_pred EEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcC
Confidence 3333334678999999887777764 4678999998754322111 134567777555544444 45788888855
Q ss_pred CC
Q 041916 170 SG 171 (359)
Q Consensus 170 ~~ 171 (359)
++
T Consensus 320 ~G 321 (400)
T 3p5b_L 320 TG 321 (400)
T ss_dssp SC
T ss_pred CC
Confidence 55
No 284
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.04 E-value=0.00053 Score=59.50 Aligned_cols=158 Identities=12% Similarity=0.101 Sum_probs=102.5
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCcceEEEecc-----CC--CeEEEEE---cCCCCEEEEEe---
Q 041916 56 FRTGLGRTDVMRVNPFNGVVSLGH-SGGTVTMWKPTTAAPLIKMLCH-----QG--PVSALAF---HPNGHLMATSG--- 121 (359)
Q Consensus 56 ~~~~~~~v~~~~~sp~~~~l~sg~-~dg~v~lwd~~~~~~~~~~~~h-----~~--~v~~i~~---~~~~~~l~~~~--- 121 (359)
+.......-+++|++....|..++ ..|+|..||+..+......... .. .+..|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 334445567899988655555555 7999999999755433322211 11 3579999 68877777543
Q ss_pred ----------CCCeEEEEEcC---CceeeEec------cC----------CceeEEEcCCc--eEEEEcC-CcEEEEcCC
Q 041916 122 ----------KECKIKIWDLR---KYEVLQTL------PG----------HAKTLDFSQKG--LLAVGTG-SFVQILGDF 169 (359)
Q Consensus 122 ----------~d~~i~iwd~~---~~~~~~~~------~~----------~i~~~~~s~~g--l~~~~~d-~~i~i~d~~ 169 (359)
.+..|..||+. +++.+... .+ .+..++..++| +++.+.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 26789999999 77765443 11 36899999999 6667777 888888743
Q ss_pred CCCCccceeeccc--CCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 170 SGSHNYSRYMGHS--MVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 170 ~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
+ .....+.... .......+.|+++|+|..|++....|.+..+..
T Consensus 168 -G-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 168 -G-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV 213 (334)
T ss_dssp -S-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred -C-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence 3 2233222111 001224779999999998888777775555543
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.03 E-value=0.0018 Score=56.71 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=108.0
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CC---EEEEEeC---CCeEEEEeC--CCCcceEE
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPF----NG---VVSLGHS---GGTVTMWKP--TTAAPLIK 97 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~----~~---~l~sg~~---dg~v~lwd~--~~~~~~~~ 97 (359)
..+++.....+-|.+||+ +|+.+..+.. +.++.+..-|+ |. ++++... +++|.+|++ .++ .+..
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~~ 115 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQS 115 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEEE
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-ceee
Confidence 355666667789999999 7998888864 56777776663 22 2333333 578999966 333 3444
Q ss_pred Eec------cC-CCeEEEEE--cCC-CC-EEEEEeCCCeEEEEEcC-------CceeeEec--cCCceeEEEcCCc--eE
Q 041916 98 MLC------HQ-GPVSALAF--HPN-GH-LMATSGKECKIKIWDLR-------KYEVLQTL--PGHAKTLDFSQKG--LL 155 (359)
Q Consensus 98 ~~~------h~-~~v~~i~~--~~~-~~-~l~~~~~d~~i~iwd~~-------~~~~~~~~--~~~i~~~~~s~~g--l~ 155 (359)
+.. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+++| .+.+..|...+.. ++
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence 421 11 44566777 774 44 67888889999999983 34667777 5677888888755 77
Q ss_pred EEEcCCcEEEEcCCCCC----CccceeecccCCCCcceEEEEEe--eCCC-EEEEEcC-CCeEEEEE
Q 041916 156 AVGTGSFVQILGDFSGS----HNYSRYMGHSMVKGYQIGKVSFR--PYED-VLGIGHS-MGWSSILV 214 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~v~~~~~~--p~~~-~l~~~~~-dg~~~i~~ 214 (359)
++-.+.-|..|+..... ..+..+. ... ....+..++.. ++++ +|++++. ++...+|.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~-l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRH-LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBS-SSS-BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEec-CCc-cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 77777667667633211 1222221 110 12357778774 4555 5555443 33444443
No 286
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.99 E-value=0.00015 Score=71.24 Aligned_cols=107 Identities=12% Similarity=0.072 Sum_probs=71.5
Q ss_pred CeEEEEEc-CCCCEEEEEeC-C----CeEEEEeCCCC-cceE-EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEE
Q 041916 62 RTDVMRVN-PFNGVVSLGHS-G----GTVTMWKPTTA-APLI-KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKI 128 (359)
Q Consensus 62 ~v~~~~~s-p~~~~l~sg~~-d----g~v~lwd~~~~-~~~~-~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~i 128 (359)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+. .+.. ...+++|+|||+.|+....| ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 99998775543 3 35999999988 6321 1211 13468999999988777665 36888
Q ss_pred EEcCCce----eeEecc--CCceeEEEcCCc--eEEEEc---CCcEEEEcCCCC
Q 041916 129 WDLRKYE----VLQTLP--GHAKTLDFSQKG--LLAVGT---GSFVQILGDFSG 171 (359)
Q Consensus 129 wd~~~~~----~~~~~~--~~i~~~~~s~~g--l~~~~~---d~~i~i~d~~~~ 171 (359)
+++.++. .+.... .....+.||||| ++..+. ...|.++|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 8987753 222222 235678999999 333332 346888887654
No 287
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.99 E-value=0.0064 Score=56.11 Aligned_cols=130 Identities=8% Similarity=0.025 Sum_probs=79.7
Q ss_pred eEEEeCCCcEEEEeccCC-----CeEEEEE-------ecCCCEEEEEecCC-------eEEEEECCC-CeEE-----EEE
Q 041916 2 PYIYNRDGTELHCLKEHG-----AVLKLQF-------LRNHFLLASINKFG-------QLRYQDVTM-GEIV-----GNF 56 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~-----~~~~l~~-------s~~~~~l~s~~~dg-------~i~iwd~~~-~~~~-----~~~ 56 (359)
|++.|..+..+.++-.-. .+..++| ++++..|+++...+ .|.+++... |... ..+
T Consensus 164 i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v 243 (496)
T 3kya_A 164 IQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLI 243 (496)
T ss_dssp EEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEE
T ss_pred EEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceee
Confidence 456674444444443222 3599999 99998666665543 366776443 2221 222
Q ss_pred ecCCCCeEEEEEcCC-CCEEEEEeCCCeEEEEeCC-------CCcc-----------eEEE-e-ccCCCeEEEEEcCCCC
Q 041916 57 RTGLGRTDVMRVNPF-NGVVSLGHSGGTVTMWKPT-------TAAP-----------LIKM-L-CHQGPVSALAFHPNGH 115 (359)
Q Consensus 57 ~~~~~~v~~~~~sp~-~~~l~sg~~dg~v~lwd~~-------~~~~-----------~~~~-~-~h~~~v~~i~~~~~~~ 115 (359)
... .....++++|+ +.++++-..++.|..+|+. ++.. ...+ . ......+.|+|+|+|+
T Consensus 244 ~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~ 322 (496)
T 3kya_A 244 AAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGK 322 (496)
T ss_dssp EEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSS
T ss_pred ccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCC
Confidence 222 24567889994 5666677788899999987 5543 1122 1 2223457899999999
Q ss_pred EEEEE-eCCCeEEEEEcC
Q 041916 116 LMATS-GKECKIKIWDLR 132 (359)
Q Consensus 116 ~l~~~-~~d~~i~iwd~~ 132 (359)
+|+.+ +..+.|+.+|..
T Consensus 323 ~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 323 YAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEETTTTEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEecC
Confidence 65555 466789986653
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.98 E-value=4.6e-05 Score=74.20 Aligned_cols=168 Identities=10% Similarity=-0.026 Sum_probs=98.5
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCC----CeEEEEEecCCCCeEEEEEcCCC-CE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTM----GEIVGNFRTGLGRTDVMRVNPFN-GV 74 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~~~~v~~~~~sp~~-~~ 74 (359)
|++.+ ..+.....+.....+..|+|++.+..|+.+. ..+.|..+++.. ......+......+..|++.+.+ .+
T Consensus 388 I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~L 467 (699)
T 1n7d_A 388 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI 467 (699)
T ss_dssp -CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBC
T ss_pred eEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcE
Confidence 34445 2233333334444568899999776666554 457899999875 22222222222345678888644 45
Q ss_pred EEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec---cCCceeEEE
Q 041916 75 VSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL---PGHAKTLDF 149 (359)
Q Consensus 75 l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~---~~~i~~~~~ 149 (359)
+++-...+.|.++++........+.........|+++|.+.+|+.+.. .+.|..+++........+ -.....|+|
T Consensus 468 Y~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlav 547 (699)
T 1n7d_A 468 YWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITL 547 (699)
T ss_dssp EECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEE
T ss_pred EEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEE
Confidence 555556788999998754333222222234578999997666555443 267888887643221111 234688999
Q ss_pred cCCc--eEEEE-cCCcEEEEcCC
Q 041916 150 SQKG--LLAVG-TGSFVQILGDF 169 (359)
Q Consensus 150 s~~g--l~~~~-~d~~i~i~d~~ 169 (359)
+|++ |+.+. ..+.|..+++.
T Consensus 548 d~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 548 DLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CTTTCCEEEEETTTTEEEEECSS
T ss_pred eccCCEEEEEecCCCeEEEEccC
Confidence 9876 55554 45789999964
No 289
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.97 E-value=0.0028 Score=55.97 Aligned_cols=185 Identities=14% Similarity=0.102 Sum_probs=105.5
Q ss_pred ecc-CCCeEEEEEecCCCEEEEEe------------cCCeEEEEECCC--CeEE-EEEec-----CCCCeEEEEEcC--C
Q 041916 15 LKE-HGAVLKLQFLRNHFLLASIN------------KFGQLRYQDVTM--GEIV-GNFRT-----GLGRTDVMRVNP--F 71 (359)
Q Consensus 15 l~~-h~~~~~l~~s~~~~~l~s~~------------~dg~i~iwd~~~--~~~~-~~~~~-----~~~~v~~~~~sp--~ 71 (359)
+.+ ..++-.+...|+|..+++++ .+|.|.++|+.+ ++.. ..+.+ .....+.+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 444 23557788889886666552 689999999973 3321 12222 123577888766 3
Q ss_pred CC--EEEEEeC--CCeEEEEeCCCCcc----eEEEecc-CCCeEEEEEcCCCCEEEEEe-----------------CCCe
Q 041916 72 NG--VVSLGHS--GGTVTMWKPTTAAP----LIKMLCH-QGPVSALAFHPNGHLMATSG-----------------KECK 125 (359)
Q Consensus 72 ~~--~l~sg~~--dg~v~lwd~~~~~~----~~~~~~h-~~~v~~i~~~~~~~~l~~~~-----------------~d~~ 125 (359)
+. ++++-.. +.+|.+|++..... +..+.+. -...+++++.++|.+.++.. ..|.
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 43 4454444 56788887765422 2223222 23578999999998777654 1245
Q ss_pred EEEEEcCCceeeEeccCCceeEEEcCCc--eEEEE-cCCcEEEEcCCCCCCcc--ceeecccCCCCcceEEEEEee-CCC
Q 041916 126 IKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVG-TGSFVQILGDFSGSHNY--SRYMGHSMVKGYQIGKVSFRP-YED 199 (359)
Q Consensus 126 i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~p-~~~ 199 (359)
|..+|...-+.+..--...+.++|||++ ++++. ..+.|..|++....... ..+ .. ....-.+++.+ +|.
T Consensus 205 vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~----~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 205 VTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF----DTLVDNISVDPVTGD 279 (355)
T ss_dssp EEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC----SSEEEEEEECTTTCC
T ss_pred EEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC----CCCCceEEEeCCCCc
Confidence 6666653211111112356899999999 44444 46899999975332211 112 11 12456677777 465
Q ss_pred EEEEE
Q 041916 200 VLGIG 204 (359)
Q Consensus 200 ~l~~~ 204 (359)
+.+++
T Consensus 280 lwva~ 284 (355)
T 3sre_A 280 LWVGC 284 (355)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54443
No 290
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.97 E-value=0.0051 Score=53.66 Aligned_cols=150 Identities=9% Similarity=-0.032 Sum_probs=95.8
Q ss_pred eEEEEEecCC-CEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLRNH-FLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH--SGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~--~dg~v~lwd~~~~~~~~~ 97 (359)
+..+++.+.+ .++++-...+.|.++++........+.........+++.|.+..|+.+. ..+.|...++.. .....
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~ 159 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFI 159 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEE
Confidence 4678888754 4445555678999999875433333334456678999999766655554 357888888763 33333
Q ss_pred E-eccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcCCCC
Q 041916 98 M-LCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGDFSG 171 (359)
Q Consensus 98 ~-~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~~ 171 (359)
+ ...-..-+.|+|+|++..|+.+. ..+.|..+|+......... -..+..+++..++++.+. ..+.|..++..++
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence 3 22233458999999777776654 5678999998743221111 235677887666644444 4578888886565
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.95 E-value=0.0038 Score=57.60 Aligned_cols=147 Identities=12% Similarity=0.032 Sum_probs=92.6
Q ss_pred eEEEEEec-CCCEEEEE-ecCCeEEEEECCCCeEEEEEecC---CCCeEEEEE-------cCCCCEEEEEeCCC------
Q 041916 21 VLKLQFLR-NHFLLASI-NKFGQLRYQDVTMGEIVGNFRTG---LGRTDVMRV-------NPFNGVVSLGHSGG------ 82 (359)
Q Consensus 21 ~~~l~~s~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~-------sp~~~~l~sg~~dg------ 82 (359)
+..|+|+| ++..|+.+ ...+.|++.|+.++.....+... ......++| ++++..|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 57899998 34444444 44467999999877765544432 235789999 99998666665543
Q ss_pred -eEEEEeCCC-Ccce-----EEEeccCCCeEEEEEcCC-CCEEEEEeCCCeEEEEEcC-------Ccee-----------
Q 041916 83 -TVTMWKPTT-AAPL-----IKMLCHQGPVSALAFHPN-GHLMATSGKECKIKIWDLR-------KYEV----------- 136 (359)
Q Consensus 83 -~v~lwd~~~-~~~~-----~~~~~h~~~v~~i~~~~~-~~~l~~~~~d~~i~iwd~~-------~~~~----------- 136 (359)
.|.+++... +... ..+.... ....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266776433 2221 2232222 2357889995 5555556677889999997 4432
Q ss_pred ---eEecc--CCceeEEEcCCc--eEEEE-cCCcEEEEcC
Q 041916 137 ---LQTLP--GHAKTLDFSQKG--LLAVG-TGSFVQILGD 168 (359)
Q Consensus 137 ---~~~~~--~~i~~~~~s~~g--l~~~~-~d~~i~i~d~ 168 (359)
+.... .....|+|+|+| ++.+. ..+.|+.++.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 22222 346899999999 45554 4468888653
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.94 E-value=0.0084 Score=52.16 Aligned_cols=151 Identities=11% Similarity=0.029 Sum_probs=96.0
Q ss_pred CeEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCcceE
Q 041916 20 AVLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-G-GTVTMWKPTTAAPLI 96 (359)
Q Consensus 20 ~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-d-g~v~lwd~~~~~~~~ 96 (359)
.+..+++.+.+. +.++-...+.|.++|+........+.........+++.|.+..|+.+.. . +.|..+++. +....
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~ 156 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIY 156 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeE
Confidence 358899987554 4455456789999998754433334434456789999997665554443 3 688888875 33333
Q ss_pred EEe-ccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce--eeEec---cCCceeEEEcCCceEEEE-cCCcEEEEcC
Q 041916 97 KML-CHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYE--VLQTL---PGHAKTLDFSQKGLLAVG-TGSFVQILGD 168 (359)
Q Consensus 97 ~~~-~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~--~~~~~---~~~i~~~~~s~~gl~~~~-~d~~i~i~d~ 168 (359)
.+. ..-...+.|+|+|++..|+.+. ..+.|..+|+.... .+... ......+++..+.++.+. ..+.|..++.
T Consensus 157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence 332 2234568999999877776665 55799999987432 22221 134577787643344444 4578888886
Q ss_pred CCC
Q 041916 169 FSG 171 (359)
Q Consensus 169 ~~~ 171 (359)
.++
T Consensus 237 ~~g 239 (316)
T 1ijq_A 237 LTG 239 (316)
T ss_dssp TTC
T ss_pred CCC
Confidence 555
No 293
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.92 E-value=0.007 Score=53.59 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=82.2
Q ss_pred cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeE--EEEEe---cCCCCeEEEEEcCC---CCEEEEEeC-C-----C
Q 041916 17 EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI--VGNFR---TGLGRTDVMRVNPF---NGVVSLGHS-G-----G 82 (359)
Q Consensus 17 ~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~sp~---~~~l~sg~~-d-----g 82 (359)
+-..+..|+|.|+|.++++ ..+|.|.+++ ++.. +..+. ........|+|+|+ +..|+++.. . +
T Consensus 29 ~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 29 GLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 3445699999999986555 5679999999 4542 22221 12356889999998 444444433 2 5
Q ss_pred eEEEEeCCCCc-----ceE-EEec---cCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCc------
Q 041916 83 TVTMWKPTTAA-----PLI-KMLC---HQGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLRKY------ 134 (359)
Q Consensus 83 ~v~lwd~~~~~-----~~~-~~~~---h~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~~------ 134 (359)
.|..|++..+. .+. .+.. .......|+|.|||.+.++.+. .+.|.-+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 78888876432 111 1221 1112368999999976655432 156666666431
Q ss_pred --------eeeEec-cCCceeEEEcC-Cc-eEEEEc
Q 041916 135 --------EVLQTL-PGHAKTLDFSQ-KG-LLAVGT 159 (359)
Q Consensus 135 --------~~~~~~-~~~i~~~~~s~-~g-l~~~~~ 159 (359)
..+... -.....++|+| +| ++++..
T Consensus 186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEE
T ss_pred ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEc
Confidence 011111 12357889999 66 666553
No 294
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.88 E-value=0.00022 Score=68.95 Aligned_cols=181 Identities=9% Similarity=-0.031 Sum_probs=99.5
Q ss_pred EEEEEecCCCEEEEEe-cC-----CeEEEEECCCCeEEEEEecCC-CCe----EEEEEcCCCCEEEEEeCCC--------
Q 041916 22 LKLQFLRNHFLLASIN-KF-----GQLRYQDVTMGEIVGNFRTGL-GRT----DVMRVNPFNGVVSLGHSGG-------- 82 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~-~d-----g~i~iwd~~~~~~~~~~~~~~-~~v----~~~~~sp~~~~l~sg~~dg-------- 82 (359)
.++++.+++++++.|+ .+ ..+.+||..++.-.. +.... .+. ....+..++..++.|+.+|
T Consensus 290 ~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~ 368 (656)
T 1k3i_A 290 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS 368 (656)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS
T ss_pred cceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCccccccccccccceeecCCceEEEECCCCcEEEecCc
Confidence 5667778999999988 34 579999998876332 21000 000 0012234555556665544
Q ss_pred -eEEEEeCCCCcceEEEeccC---------CCeEEEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCceeeE--
Q 041916 83 -TVTMWKPTTAAPLIKMLCHQ---------GPVSALAFHP-NGHLMATSGKEC-----------KIKIWDLRKYEVLQ-- 138 (359)
Q Consensus 83 -~v~lwd~~~~~~~~~~~~h~---------~~v~~i~~~~-~~~~l~~~~~d~-----------~i~iwd~~~~~~~~-- 138 (359)
.+..||+.+..-......+. ..-.++.|.. ++.+++.|+.++ .|.+||..+.....
T Consensus 369 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 448 (656)
T 1k3i_A 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA 448 (656)
T ss_dssp SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC
T ss_pred cceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc
Confidence 46788887665333222111 1224455544 677777777432 68888887754332
Q ss_pred --eccC--CceeEEEcCCc--eEEEEcC-----------CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEE
Q 041916 139 --TLPG--HAKTLDFSQKG--LLAVGTG-----------SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVL 201 (359)
Q Consensus 139 --~~~~--~i~~~~~s~~g--l~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 201 (359)
.++. .-.+++..|+| ++.+|.+ ..+.+||..++ ....+..... +........+.|+++++
T Consensus 449 ~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--~W~~~~~~~~-~R~~hs~a~ll~dg~v~ 525 (656)
T 1k3i_A 449 SNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSI-VRVYHSISLLLPDGRVF 525 (656)
T ss_dssp TTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSS-CCCTTEEEEECTTSCEE
T ss_pred cCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--ceeecCCCCC-ccccccHhhcCCCcEEE
Confidence 2221 12456677888 4445433 46889997554 1111111111 11123345567899999
Q ss_pred EEEcC
Q 041916 202 GIGHS 206 (359)
Q Consensus 202 ~~~~~ 206 (359)
++|+.
T Consensus 526 v~GG~ 530 (656)
T 1k3i_A 526 NGGGG 530 (656)
T ss_dssp EEECC
T ss_pred ecCCC
Confidence 88885
No 295
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.85 E-value=0.01 Score=51.92 Aligned_cols=179 Identities=11% Similarity=0.136 Sum_probs=102.3
Q ss_pred EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEE
Q 041916 22 LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR---TGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKM 98 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~ 98 (359)
.++.|++ +..++ ++..+.|.. ..+.|+.-..+. .+.+.+..+.+.+++..++++ .+|.|.. ....+..-..+
T Consensus 83 ~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~ 157 (327)
T 2xbg_A 83 NSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQAL 157 (327)
T ss_dssp EEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEE
T ss_pred EEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEe
Confidence 8888886 44444 455665443 334344322222 123457778877777666655 4554432 22223332222
Q ss_pred -eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCceeeEec-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCCC
Q 041916 99 -LCHQGPVSALAFHPNGHLMATSGKECKIKIWDL--RKYEVLQTL-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGSH 173 (359)
Q Consensus 99 -~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~~ 173 (359)
..+...+.++++.|++.+++++...+..+-+|- .+.+.+... ...+..+.+++++ +++++.+|.+.+.+...+ .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G-~ 236 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS-E 236 (327)
T ss_dssp ECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE-E
T ss_pred ecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCC-C
Confidence 244567899999999888877655444444553 445554332 3467889999998 888888888877731112 2
Q ss_pred ccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 174 NYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 174 ~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
....+..........+.+++|.+++.+++++..
T Consensus 237 tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~ 269 (327)
T 2xbg_A 237 NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGA 269 (327)
T ss_dssp EECCCBCTTSSCCSCEEEEEESSSSCEEEEEST
T ss_pred eeEeccCCcccCCcceEEEEecCCCEEEEEeCC
Confidence 212111110001225889999988887777664
No 296
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.70 E-value=0.024 Score=54.23 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=97.5
Q ss_pred ccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC
Q 041916 16 KEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEI-VGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 16 ~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~ 92 (359)
..-..+..++|++.+..|+.+. ..+.|..+++..... ...+......+..+++.+.+. ++++-...+.|.+.++...
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~ 116 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 116 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence 3444568999999766666554 467899999875432 233444445788999998655 5555567789999998754
Q ss_pred cceEEEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec---cCCceeEEEcCCc--eEEEE-cCCcEE
Q 041916 93 APLIKMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL---PGHAKTLDFSQKG--LLAVG-TGSFVQ 164 (359)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~---~~~i~~~~~s~~g--l~~~~-~d~~i~ 164 (359)
.....+...-....+|+++|.+.+|+.+.. .+.|...++......... -..+..|++++++ ++.+. ..+.|.
T Consensus 117 ~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~ 196 (619)
T 3s94_A 117 LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH 196 (619)
T ss_dssp SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEE
T ss_pred CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEE
Confidence 332223233345678999997666666553 467777777643222222 2356899999865 55554 457899
Q ss_pred EEcCCC
Q 041916 165 ILGDFS 170 (359)
Q Consensus 165 i~d~~~ 170 (359)
.+|+..
T Consensus 197 ~~~~dG 202 (619)
T 3s94_A 197 KSNLDG 202 (619)
T ss_dssp EESSSC
T ss_pred EecCCC
Confidence 998643
No 297
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.69 E-value=0.0018 Score=62.53 Aligned_cols=114 Identities=9% Similarity=-0.008 Sum_probs=77.0
Q ss_pred EEEEEec-CCCEEEEEecCC-----------eEEEEECCCCeE--EEEEec-CCCCeEEEEEcCCCCEEEEEeC-CCeEE
Q 041916 22 LKLQFLR-NHFLLASINKFG-----------QLRYQDVTMGEI--VGNFRT-GLGRTDVMRVNPFNGVVSLGHS-GGTVT 85 (359)
Q Consensus 22 ~~l~~s~-~~~~l~s~~~dg-----------~i~iwd~~~~~~--~~~~~~-~~~~v~~~~~sp~~~~l~sg~~-dg~v~ 85 (359)
..+++.| ++.+++.|+.+. .+.+||+.+++. +..+.. +.....++++.+++.+++.|+. +..+.
T Consensus 189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 5678888 888888887543 688999988752 223322 3334556788899999999884 55799
Q ss_pred EEeCCCCcceE--EEeccCCCeEEEEEcCCCCEEEEEe-CC-----CeEEEEEcCCcee
Q 041916 86 MWKPTTAAPLI--KMLCHQGPVSALAFHPNGHLMATSG-KE-----CKIKIWDLRKYEV 136 (359)
Q Consensus 86 lwd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~-~d-----~~i~iwd~~~~~~ 136 (359)
+||+.+.+-.. .+.... .-.++++.++|++++.|+ .+ ..+.+||..+..-
T Consensus 269 ~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred EecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 99987653211 111111 123556678999999988 34 5699999987653
No 298
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.64 E-value=0.026 Score=55.45 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=96.5
Q ss_pred eEEEEEecCCCEEE-EEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-CC-CeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLRNHFLLA-SINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-SG-GTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-~d-g~v~lwd~~~~~~~~~ 97 (359)
+..|++.+.+..|+ +-...+.|.+.++........+.........|++.|.+..|+.+. .+ +.|...++........
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l 552 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 552 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence 47899998765444 445578999999975544344444555689999999866555554 23 6798888864433333
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCceeeEecc-----CCceeEEEcCCceEEEE-cCCcEEEEcCCC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQKGLLAVG-TGSFVQILGDFS 170 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~gl~~~~-~d~~i~i~d~~~ 170 (359)
+...-...+.|++++.+..|+.+. ..+.|..+|+........+. .....|++..+.++.+. ..+.|...|..+
T Consensus 553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence 333335678999998777777664 45689999986543222221 23456776555455554 346777777555
Q ss_pred C
Q 041916 171 G 171 (359)
Q Consensus 171 ~ 171 (359)
+
T Consensus 633 G 633 (791)
T 3m0c_C 633 G 633 (791)
T ss_dssp C
T ss_pred C
Confidence 5
No 299
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.64 E-value=0.011 Score=52.91 Aligned_cols=140 Identities=14% Similarity=0.207 Sum_probs=95.8
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc------
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG----LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA------ 93 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~------ 93 (359)
...+.+|.-++++- ++.||.-++..+..-+.+... -..+..+..||+|.+||..+. ..|.|..+..+.
T Consensus 26 ~~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccc
Confidence 33445666665553 578998888754434444433 235788999999999998755 478888876321
Q ss_pred ----c--eEEEec------cCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCc--eeeEec-------c-----CCc
Q 041916 94 ----P--LIKMLC------HQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKY--EVLQTL-------P-----GHA 144 (359)
Q Consensus 94 ----~--~~~~~~------h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~--~~~~~~-------~-----~~i 144 (359)
+ ...+.- ...+|..+.||| .+..|++-..|++|++||+... +|. .+ . ..|
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev 182 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDI 182 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCE
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceE
Confidence 1 123332 256799999999 5678999999999999999862 222 22 1 357
Q ss_pred eeEEEcCCc--eEEEE--cCCcEEEE
Q 041916 145 KTLDFSQKG--LLAVG--TGSFVQIL 166 (359)
Q Consensus 145 ~~~~~s~~g--l~~~~--~d~~i~i~ 166 (359)
.+++|.++| +++.+ .+|.|+-.
T Consensus 183 ~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 183 TDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 899999988 66655 66877754
No 300
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.61 E-value=0.0067 Score=49.24 Aligned_cols=166 Identities=15% Similarity=0.093 Sum_probs=95.5
Q ss_pred CCEEEEEecCCeEEEEECCCCe------EEEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc------eE
Q 041916 30 HFLLASINKFGQLRYQDVTMGE------IVGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP------LI 96 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~------~~ 96 (359)
...|++...| +|+.=.+.++. ....+-. .-..+..++|+|+|.+.++ .+|.+.-.++.+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 3456666666 66655555443 1122221 1246789999998887666 778877777655322 11
Q ss_pred EEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce---------eeEec-cCCceeEEEcCCc-eEEEEcCCcE
Q 041916 97 KML--CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE---------VLQTL-PGHAKTLDFSQKG-LLAVGTGSFV 163 (359)
Q Consensus 97 ~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~---------~~~~~-~~~i~~~~~s~~g-l~~~~~d~~i 163 (359)
.+- +..+ ..++.|+|+|.+.++ .||.|+-++--+.. .+... =..+..|.+.|+| |+++. |+.+
T Consensus 81 ~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~l 156 (236)
T 1tl2_A 81 KIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQF 156 (236)
T ss_dssp EEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEE
T ss_pred Eeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcE
Confidence 111 1111 478999999988777 56999888763311 11111 1357999999999 88888 8886
Q ss_pred EEEcCCCCCCc----cceeecccCCCCcceEEEEEeeCCCEEEEE
Q 041916 164 QILGDFSGSHN----YSRYMGHSMVKGYQIGKVSFRPYEDVLGIG 204 (359)
Q Consensus 164 ~i~d~~~~~~~----~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~ 204 (359)
+-......... .....++.. -....-+.|+|++.+.++.
T Consensus 157 yr~~~P~~~~~~wl~~~~~~g~~g--~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 157 YKALPPVSNQDNWLARATKIGQGG--WDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp EEECCCSSTTCCHHHHCEEEESSS--GGGEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCcccccccceeccCC--cceEEEEEECCCCcEEEEe
Confidence 54433222111 111222111 1134446788988777665
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.60 E-value=0.055 Score=51.80 Aligned_cols=190 Identities=11% Similarity=-0.033 Sum_probs=117.4
Q ss_pred CCeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcceE
Q 041916 19 GAVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAPLI 96 (359)
Q Consensus 19 ~~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~~~ 96 (359)
..+..++|++.+..|+.+ ..++.|..+++........+......+..+++.+.+. ++++-...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 345899999976555544 4578999999875544444443335678899987655 45555567889999987543322
Q ss_pred EEeccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEec--cCCceeEEEcCCc--eEEEE-cCCcEEEEcCC
Q 041916 97 KMLCHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTL--PGHAKTLDFSQKG--LLAVG-TGSFVQILGDF 169 (359)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~--~~~i~~~~~s~~g--l~~~~-~d~~i~i~d~~ 169 (359)
.+...-....+|+++|...+|+.+.. .+.|...++......... -..+..|++++++ ++.+. ..+.|..+|+.
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCC
Confidence 22233345689999996666666552 567888887654322222 2357899999975 55554 45789999965
Q ss_pred CCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEc
Q 041916 170 SGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVP 215 (359)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~ 215 (359)
... . ..+.... ....++++.. +.++.+-...+.+..+..
T Consensus 197 G~~-~-~v~~~~l----~~P~glav~~-~~ly~tD~~~~~I~~~dk 235 (628)
T 4a0p_A 197 GLN-R-EVIADDL----PHPFGLTQYQ-DYIYWTDWSRRSIERANK 235 (628)
T ss_dssp SCS-C-EEEEECC----SCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred CCc-e-EEeeccC----CCceEEEEEC-CEEEEecCCCCEEEEEEC
Confidence 432 2 3332221 1345777754 444445445565555543
No 302
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.48 E-value=0.013 Score=52.55 Aligned_cols=130 Identities=8% Similarity=0.036 Sum_probs=82.3
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCcceEEEecc----CCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-----------
Q 041916 71 FNGVVSLGHSGGTVTMWKPTTAAPLIKMLCH----QGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE----------- 135 (359)
Q Consensus 71 ~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~----------- 135 (359)
+|.-++.+ .++.|+.-++......+.+... -+.|..+..+|+|.+||..+. ..|.|..+..+.
T Consensus 31 n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccc
Confidence 44444443 2356777777654445555432 235788999999999998864 688888886221
Q ss_pred -eeEec---------cCCceeEEEcCCc-----eEEEEcCCcEEEEcCCCCCCccceee------cccCCCCcceEEEEE
Q 041916 136 -VLQTL---------PGHAKTLDFSQKG-----LLAVGTGSFVQILGDFSGSHNYSRYM------GHSMVKGYQIGKVSF 194 (359)
Q Consensus 136 -~~~~~---------~~~i~~~~~s~~g-----l~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~~~~~v~~~~~ 194 (359)
.++.+ ..+|..+.|+|-| +++...|+.|++||+.........+. +... ....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~-~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDA-RVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCS-SCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCc-ccceEEEEEE
Confidence 11122 2468999999976 88899999999999876322222221 1100 1136888899
Q ss_pred eeCCCEEEE
Q 041916 195 RPYEDVLGI 203 (359)
Q Consensus 195 ~p~~~~l~~ 203 (359)
.+++-.|.+
T Consensus 188 g~~~lTLYv 196 (452)
T 3pbp_A 188 SKDGLTLYC 196 (452)
T ss_dssp CTTSSCEEE
T ss_pred cCCCcEEEE
Confidence 886654444
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.47 E-value=0.02 Score=50.62 Aligned_cols=100 Identities=14% Similarity=0.218 Sum_probs=62.4
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc--eEEEe---ccCCCeEEEEEcCC---CCEEEEEeC-C--
Q 041916 55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP--LIKML---CHQGPVSALAFHPN---GHLMATSGK-E-- 123 (359)
Q Consensus 55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~--~~~~~---~h~~~v~~i~~~~~---~~~l~~~~~-d-- 123 (359)
.+.........|+|.|+|.++++ ..+|.|.+++ ++.. +..+. ........|+|+|+ +..|+++.. .
T Consensus 25 ~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~ 101 (352)
T 2ism_A 25 EVVGGLEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEG 101 (352)
T ss_dssp EEECCCSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTT
T ss_pred EEECCCCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCC
Confidence 33334456789999999986554 5669999998 3432 11111 12345789999998 556555443 2
Q ss_pred ---CeEEEEEcCCce-----ee-Eecc---C---CceeEEEcCCc-eEEE
Q 041916 124 ---CKIKIWDLRKYE-----VL-QTLP---G---HAKTLDFSQKG-LLAV 157 (359)
Q Consensus 124 ---~~i~iwd~~~~~-----~~-~~~~---~---~i~~~~~s~~g-l~~~ 157 (359)
+.|..|+..... .+ ..++ + ....++|.|+| ++++
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 102 GLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp SSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred CCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 678888876431 12 2233 1 34789999999 4444
No 304
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.47 E-value=0.011 Score=51.00 Aligned_cols=163 Identities=5% Similarity=-0.044 Sum_probs=97.1
Q ss_pred EEEEecCCCEEEEEecC--------------CeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe----CCCeE
Q 041916 23 KLQFLRNHFLLASINKF--------------GQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH----SGGTV 84 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~----~dg~v 84 (359)
+--+++++.+|+-+... ..|+..++..++. ..+... .+..|++++..|+-.. .+..|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~-~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGS-TVLDPD----PCIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCC-EEEECS----CEEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcc-eEeecC----CccEEEEeCCEEEEEeecCCCCceE
Confidence 44568889888777543 4688888876653 233322 1336788888888765 34456
Q ss_pred EEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeC-CCeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEcC-
Q 041916 85 TMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGK-ECKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGTG- 160 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~d- 160 (359)
...++.. .....+..+.. .+|+|++..|+-.+. ..+|...++..+.....+.+... ..++|++ ++-...+
T Consensus 132 y~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~~-~~~~P~g~~iy~t~~~~ 205 (302)
T 3s25_A 132 YRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY-KPVVLDDTNVYYMDVNR 205 (302)
T ss_dssp EEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCEE-EEEEEETTEEEEEEGGG
T ss_pred EEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCcc-ceeeecCCEEEEEEcCC
Confidence 6666653 33444544432 456788888887665 57888888877654444444433 3466877 4444433
Q ss_pred -CcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcC
Q 041916 161 -SFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHS 206 (359)
Q Consensus 161 -~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~ 206 (359)
..|..-++... ....+... .+ ..|+|++.+|..++.
T Consensus 206 ~~~I~~~~ldG~--~~~~Lt~~------~~--~~~~~~g~~Iy~~~~ 242 (302)
T 3s25_A 206 DNAIVHVNINNP--NPVVLTEA------NI--EHYNVYGSLIFYQRG 242 (302)
T ss_dssp TTEEEEECSSSC--CCEECSCS------CE--EEEEEETTEEEEEEC
T ss_pred CcEEEEEECCCC--CeEEEeCC------Cc--ceEEECCCEEEEEEC
Confidence 36766665443 23333322 33 348888988876543
No 305
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.42 E-value=0.058 Score=47.67 Aligned_cols=148 Identities=19% Similarity=0.210 Sum_probs=85.2
Q ss_pred EEEEecc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCe-EEEEEe---cCCCCeEEEEEcCC---CCEEEEEeC--
Q 041916 11 ELHCLKE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGE-IVGNFR---TGLGRTDVMRVNPF---NGVVSLGHS-- 80 (359)
Q Consensus 11 ~~~~l~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~sp~---~~~l~sg~~-- 80 (359)
.+..+.. -..+..|+|.|+|.++++ ..+|.|.++| .++. .+..+. ........|+++|+ +..|+++..
T Consensus 20 ~~~~va~~l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~ 97 (354)
T 3a9g_A 20 KISEVASDLEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF 97 (354)
T ss_dssp EEEEEECSCSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred EEEEEeCCCCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence 3444433 344699999999985554 5669999997 4555 222221 12356889999997 444444332
Q ss_pred --C----CeEEEEeCCCC--c-----ce-EEEec-cCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcC
Q 041916 81 --G----GTVTMWKPTTA--A-----PL-IKMLC-HQGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLR 132 (359)
Q Consensus 81 --d----g~v~lwd~~~~--~-----~~-~~~~~-h~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~ 132 (359)
+ ..|..|++... . .+ ..+.. .......|+|.|||.++++.+. .|.|.-+|..
T Consensus 98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d 177 (354)
T 3a9g_A 98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE 177 (354)
T ss_dssp CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence 3 56778877643 1 11 11221 1112467999999986666432 2456666654
Q ss_pred Cc---------eeeEec-cCCceeEEEcC-Cc-eEEEEcC
Q 041916 133 KY---------EVLQTL-PGHAKTLDFSQ-KG-LLAVGTG 160 (359)
Q Consensus 133 ~~---------~~~~~~-~~~i~~~~~s~-~g-l~~~~~d 160 (359)
.. ..+... -.....++|+| +| ++++...
T Consensus 178 G~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 178 GRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp SCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred CCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence 31 012222 22467899999 66 6666543
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.40 E-value=0.0004 Score=67.58 Aligned_cols=151 Identities=10% Similarity=-0.016 Sum_probs=89.7
Q ss_pred eEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEe-C-CCeEEEEeCCCCcceEE
Q 041916 21 VLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGH-S-GGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 21 ~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~-~-dg~v~lwd~~~~~~~~~ 97 (359)
+..|++.+. +.++++-...+.|.++++........+.........|+++|.+..|+.+. . .+.|.++++........
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 366788754 44444444567899999875544333333334568899999765554443 2 26788887753322222
Q ss_pred EeccCCCeEEEEEcCCCCEEEEE-eCCCeEEEEEcCCceeeEecc-----CCceeEEEcCCceE-EEEcCCcEEEEcCCC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATS-GKECKIKIWDLRKYEVLQTLP-----GHAKTLDFSQKGLL-AVGTGSFVQILGDFS 170 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~-----~~i~~~~~s~~gl~-~~~~d~~i~i~d~~~ 170 (359)
+...-...+.|+|+|++..|+.+ +..+.|..+|+........+. .....|++..+.++ +....+.|..++..+
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 22222345689999976655554 456789999987532222221 23566777666644 433457888888555
Q ss_pred C
Q 041916 171 G 171 (359)
Q Consensus 171 ~ 171 (359)
+
T Consensus 615 G 615 (699)
T 1n7d_A 615 G 615 (699)
T ss_dssp E
T ss_pred C
Confidence 4
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.31 E-value=0.055 Score=47.81 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=82.8
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc-ceEEEe---ccCCCeEEEEEcCC---CCEEEEEeC----C
Q 041916 55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAA-PLIKML---CHQGPVSALAFHPN---GHLMATSGK----E 123 (359)
Q Consensus 55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~-~~~~~~---~h~~~v~~i~~~~~---~~~l~~~~~----d 123 (359)
.+.........|+|.|+|.+++ +..+|.|.++|. ++. .+..+. ........|+|+|+ +..|+++.. +
T Consensus 23 ~va~~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 23 EVASDLEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp EEECSCSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred EEeCCCCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 3333445678999999998555 456699999973 444 222111 12345789999997 555555433 3
Q ss_pred ----CeEEEEEcCCc-------eee-Eecc----CCceeEEEcCCc-eEEEEcC--------------CcEEEEcCCCCC
Q 041916 124 ----CKIKIWDLRKY-------EVL-QTLP----GHAKTLDFSQKG-LLAVGTG--------------SFVQILGDFSGS 172 (359)
Q Consensus 124 ----~~i~iwd~~~~-------~~~-~~~~----~~i~~~~~s~~g-l~~~~~d--------------~~i~i~d~~~~~ 172 (359)
..|..|+.... +.+ ..++ .....|+|.|+| |+++..+ |.|.-++....-
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 57888887653 111 1222 135789999999 4444221 456666642210
Q ss_pred C------cccee-ecccCCCCcceEEEEEee-CCCEEEEEcC
Q 041916 173 H------NYSRY-MGHSMVKGYQIGKVSFRP-YEDVLGIGHS 206 (359)
Q Consensus 173 ~------~~~~~-~~~~~~~~~~v~~~~~~p-~~~~l~~~~~ 206 (359)
. ....+ .++. ....++|+| ++.++++-..
T Consensus 181 p~~npf~~~~i~a~G~r-----np~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 181 PADNPFPNSPIWSYGHR-----NPQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp CTTSSSTTCCEEEECCS-----CCCEEEECTTTCCEEEEECC
T ss_pred CCCCCCCCCcEEEEccC-----CcceEEEeCCCCCEEEEecC
Confidence 0 01111 1222 367899999 6766655443
No 308
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.28 E-value=0.0054 Score=49.80 Aligned_cols=140 Identities=16% Similarity=0.055 Sum_probs=83.0
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeE------EEEEec-CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEI------VGNFRT-GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA 92 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~------~~~~~~-~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~ 92 (359)
....++|+|+|.+.++ .+|.+.-.+..++.. -..+-. .-....++.|.|+|.+.++ .||.|+-++..+.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 3479999999986666 678877777655211 111210 1112478999999988877 5699988886442
Q ss_pred cce------EEE-eccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee------eEec--c--CCceeEEEcCCc-e
Q 041916 93 APL------IKM-LCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV------LQTL--P--GHAKTLDFSQKG-L 154 (359)
Q Consensus 93 ~~~------~~~-~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~--~--~~i~~~~~s~~g-l 154 (359)
..- ..+ ..-=..+..|.|.|+|.+.++. |+.++-+..-+... ...+ . .....+.|.|+| +
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l 195 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTL 195 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCE
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcE
Confidence 211 111 1111467999999999877766 77754332221110 0111 1 123557799999 7
Q ss_pred EEEEcCCcEEEE
Q 041916 155 LAVGTGSFVQIL 166 (359)
Q Consensus 155 ~~~~~d~~i~i~ 166 (359)
.++. ++.++--
T Consensus 196 ~~v~-~g~~Y~~ 206 (236)
T 1tl2_A 196 FGVQ-GGKFYED 206 (236)
T ss_dssp EEEE-TTEEEEE
T ss_pred EEEe-CCeEEec
Confidence 6666 7754433
No 309
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.23 E-value=0.062 Score=47.20 Aligned_cols=148 Identities=14% Similarity=0.216 Sum_probs=86.5
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEE----eccCCCeEEEEEcCC---CCEEEEE---
Q 041916 53 VGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL--IKM----LCHQGPVSALAFHPN---GHLMATS--- 120 (359)
Q Consensus 53 ~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~--~~~----~~h~~~v~~i~~~~~---~~~l~~~--- 120 (359)
+..+.........|+|.|+|.++++--..|.|.+++...+... ..+ ....+....|+|+|+ +.+|++.
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 3445555567889999999997776655899999987655432 111 123456789999995 4455443
Q ss_pred eCCCeEEEEEcCCc----------eee-Eecc----CCceeEEEcCCc-e-EEEEc-------------CCcEEEEcCCC
Q 041916 121 GKECKIKIWDLRKY----------EVL-QTLP----GHAKTLDFSQKG-L-LAVGT-------------GSFVQILGDFS 170 (359)
Q Consensus 121 ~~d~~i~iwd~~~~----------~~~-~~~~----~~i~~~~~s~~g-l-~~~~~-------------d~~i~i~d~~~ 170 (359)
..++.|.-|.+..+ +.+ ..++ .....|.|.|+| | ++.+. .|.|.-++...
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 23456776766541 111 1222 134679999999 4 44332 24555555322
Q ss_pred CC---C---cccee-ecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 171 GS---H---NYSRY-MGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 171 ~~---~---~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.- . ....+ .+|. ....++|+|+|.+.++-.
T Consensus 184 ~ip~~nPf~~~~i~a~G~R-----Np~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHR-----NVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCS-----BCCEEEECTTCCEEEEEC
T ss_pred CccCCCCCCCCeEEeeCCC-----CcceEEECCCCCEEEEec
Confidence 10 0 01111 1232 467899999988766654
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.21 E-value=0.053 Score=46.40 Aligned_cols=140 Identities=10% Similarity=0.055 Sum_probs=73.3
Q ss_pred cCCCEEEEEecC-----CeEEEEECCCCe---EEE--EEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCC
Q 041916 28 RNHFLLASINKF-----GQLRYQDVTMGE---IVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTA 92 (359)
Q Consensus 28 ~~~~~l~s~~~d-----g~i~iwd~~~~~---~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~ 92 (359)
.++.+++.|+.+ ..+.+||+.++. -.. .+........++.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 356777777754 468999988765 222 22211112222222 56777777644 35888998765
Q ss_pred cc--eEEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCcee--eEeccCC--ceeEEEcCCc-eEEEEcC
Q 041916 93 AP--LIKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYEV--LQTLPGH--AKTLDFSQKG-LLAVGTG 160 (359)
Q Consensus 93 ~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~--~~~~~~~--i~~~~~s~~g-l~~~~~d 160 (359)
+- +..+......-.++.+ ++.+++.|+.+ ..+.+||+.+.+- +..++.+ -.+++...+. ++.+|.+
T Consensus 139 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 216 (301)
T 2vpj_A 139 QWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFD 216 (301)
T ss_dssp EEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred eEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCC
Confidence 42 2222111111122222 56666776654 4688999887543 3223221 1233333333 4445443
Q ss_pred -----CcEEEEcCCCC
Q 041916 161 -----SFVQILGDFSG 171 (359)
Q Consensus 161 -----~~i~i~d~~~~ 171 (359)
..+.+||+.+.
T Consensus 217 ~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 217 GTAHLSSVEAYNIRTD 232 (301)
T ss_dssp SSSBCCCEEEEETTTT
T ss_pred CCcccceEEEEeCCCC
Confidence 46889997654
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.19 E-value=0.032 Score=49.20 Aligned_cols=145 Identities=10% Similarity=0.123 Sum_probs=90.1
Q ss_pred eEEEEEec--CCC-EEEEEe-c--CCeEEEEECCCC-e---EEEEEecC-CCCeEEEEEcCCCCEEEEEe----------
Q 041916 21 VLKLQFLR--NHF-LLASIN-K--FGQLRYQDVTMG-E---IVGNFRTG-LGRTDVMRVNPFNGVVSLGH---------- 79 (359)
Q Consensus 21 ~~~l~~s~--~~~-~l~s~~-~--dg~i~iwd~~~~-~---~~~~~~~~-~~~v~~~~~sp~~~~l~sg~---------- 79 (359)
+..+.+.+ ++. +|+++. . +.+|.+|++..+ . .+..+.+. ....+.+++.++|.++++..
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~ 193 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKS 193 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHH
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccccc
Confidence 48888876 353 444442 2 467888877653 2 23334332 24578999999998777654
Q ss_pred -------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-cee--eE--eccCCcee
Q 041916 80 -------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSG-KECKIKIWDLRK-YEV--LQ--TLPGHAKT 146 (359)
Q Consensus 80 -------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~-~~~--~~--~~~~~i~~ 146 (359)
..|.|..+|.. + +..+...-..-+.|+|+||++.|+.+. ..+.|..||+.. +.. .. .+.+.+..
T Consensus 194 ~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDG 270 (355)
T 3sre_A 194 WEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN 270 (355)
T ss_dssp HHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred chhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCce
Confidence 13566666653 2 222322234568999999999887765 568999999863 322 12 23566788
Q ss_pred EEEcC-Cc-eEE-EEcC-CcEEEEcC
Q 041916 147 LDFSQ-KG-LLA-VGTG-SFVQILGD 168 (359)
Q Consensus 147 ~~~s~-~g-l~~-~~~d-~~i~i~d~ 168 (359)
+++.+ +| +.+ +..+ +.|..|+.
T Consensus 271 i~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 271 ISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred EEEeCCCCcEEEEecCCceEEEEECC
Confidence 99999 58 555 4434 35555553
No 312
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.19 E-value=0.062 Score=47.19 Aligned_cols=148 Identities=19% Similarity=0.133 Sum_probs=87.2
Q ss_pred EEEecc-CCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEE--EEE----ecCCCCeEEEEEcCC---CCEEEEE---
Q 041916 12 LHCLKE-HGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIV--GNF----RTGLGRTDVMRVNPF---NGVVSLG--- 78 (359)
Q Consensus 12 ~~~l~~-h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~----~~~~~~v~~~~~sp~---~~~l~sg--- 78 (359)
+..+.. -..++.|+|.|+|.++++--..|.|++++..++... ..+ .........|+++|+ +..|+..
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~ 103 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS 103 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence 334443 445699999999998777655899999987666532 222 123456889999996 3444332
Q ss_pred eCCCeEEEEeCCCC--------cceE---EEe-ccCCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCC
Q 041916 79 HSGGTVTMWKPTTA--------APLI---KML-CHQGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLRK 133 (359)
Q Consensus 79 ~~dg~v~lwd~~~~--------~~~~---~~~-~h~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~ 133 (359)
..++.|.-|.+..+ .... .+. .....-..|+|.|||.+.++.+. .|.|.-++...
T Consensus 104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 24456666765541 1111 121 11113457999999987776542 24555555542
Q ss_pred c---------eeeEec-cCCceeEEEcCCc-eEEEEc
Q 041916 134 Y---------EVLQTL-PGHAKTLDFSQKG-LLAVGT 159 (359)
Q Consensus 134 ~---------~~~~~~-~~~i~~~~~s~~g-l~~~~~ 159 (359)
. ..+... -.....++|+|+| ++++-.
T Consensus 184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEEC
T ss_pred CccCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEec
Confidence 2 112222 1236789999998 666553
No 313
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.15 E-value=0.079 Score=48.54 Aligned_cols=102 Identities=18% Similarity=0.239 Sum_probs=61.4
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcce--EEEec------cCCCeEEEEEcCC---CCEEEEEeC-
Q 041916 55 NFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPL--IKMLC------HQGPVSALAFHPN---GHLMATSGK- 122 (359)
Q Consensus 55 ~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~--~~~~~------h~~~v~~i~~~~~---~~~l~~~~~- 122 (359)
.+.......+.|+|.|+|+++++-...+.|.+++..++... ..+.. ..+....|+|+|+ +.+|+++..
T Consensus 21 ~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~ 100 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTF 100 (454)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred EEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEec
Confidence 33334456789999999997776554457988887655432 22211 2345679999995 556555432
Q ss_pred ------------CCeEEEEEcCCc-------eeeE-ecc----CCceeEEEcCCc-eEE
Q 041916 123 ------------ECKIKIWDLRKY-------EVLQ-TLP----GHAKTLDFSQKG-LLA 156 (359)
Q Consensus 123 ------------d~~i~iwd~~~~-------~~~~-~~~----~~i~~~~~s~~g-l~~ 156 (359)
...|.-|++... +.+. .++ .....|+|.|+| |++
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv 159 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYY 159 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEE
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEE
Confidence 235666665321 1122 222 235889999999 444
No 314
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.12 E-value=0.058 Score=49.44 Aligned_cols=110 Identities=10% Similarity=0.107 Sum_probs=64.7
Q ss_pred EEEec-cCCCeEEEEEecCCCEEEEEecCCeEEEEECCCCeEE--EEEec------CCCCeEEEEEcCC---CCEEEEEe
Q 041916 12 LHCLK-EHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIV--GNFRT------GLGRTDVMRVNPF---NGVVSLGH 79 (359)
Q Consensus 12 ~~~l~-~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~------~~~~v~~~~~sp~---~~~l~sg~ 79 (359)
+..+. +-..++.|+|.|+|.++++-...+.|.+++..++... ..+.. ....+..|+|+|+ +..|+.+.
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 33343 3445699999999997776544457988887656532 22221 2345779999995 44444433
Q ss_pred C-------------CCeEEEEeCCCC--c-----ceEE-Ee-ccCCCeEEEEEcCCCCEEEEEe
Q 041916 80 S-------------GGTVTMWKPTTA--A-----PLIK-ML-CHQGPVSALAFHPNGHLMATSG 121 (359)
Q Consensus 80 ~-------------dg~v~lwd~~~~--~-----~~~~-~~-~h~~~v~~i~~~~~~~~l~~~~ 121 (359)
. ...|.-|++... . .+.. +. ........|+|.|||.+.++.+
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 2 234666665322 1 1111 21 1122468899999998777655
No 315
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.12 E-value=0.076 Score=45.53 Aligned_cols=139 Identities=12% Similarity=0.051 Sum_probs=72.5
Q ss_pred CCCEEEEEecC----CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCcceE
Q 041916 29 NHFLLASINKF----GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG------GTVTMWKPTTAAPLI 96 (359)
Q Consensus 29 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d------g~v~lwd~~~~~~~~ 96 (359)
++.+++.|+.+ ..+.+||+.++.-... +........++.+ ++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 66777777754 6789999988753322 2111111222222 56777777765 458899988764211
Q ss_pred E--EeccCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCce--eeEeccCC--ceeEEEcCCc-eEEEEcC
Q 041916 97 K--MLCHQGPVSALAFHPNGHLMATSGK---------ECKIKIWDLRKYE--VLQTLPGH--AKTLDFSQKG-LLAVGTG 160 (359)
Q Consensus 97 ~--~~~h~~~v~~i~~~~~~~~l~~~~~---------d~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~~g-l~~~~~d 160 (359)
. +......-.++.+ ++.+++.|+. -..+.+||+.+.. .+..++.+ -.+++...+. ++.+|.+
T Consensus 133 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 210 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQN 210 (306)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEE
T ss_pred CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCC
Confidence 1 1111111122222 5566666653 3458899998754 23333221 1233333333 4444432
Q ss_pred -----CcEEEEcCCCC
Q 041916 161 -----SFVQILGDFSG 171 (359)
Q Consensus 161 -----~~i~i~d~~~~ 171 (359)
..+.+||+.+.
T Consensus 211 ~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 211 GLGGLDNVEYYDIKLN 226 (306)
T ss_dssp TTEEBCCEEEEETTTT
T ss_pred CCCCCceEEEeeCCCC
Confidence 46888987654
No 316
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.99 E-value=0.27 Score=46.97 Aligned_cols=150 Identities=7% Similarity=-0.008 Sum_probs=95.6
Q ss_pred CeEEEEEecCCCEEEEE-ecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEE
Q 041916 20 AVLKLQFLRNHFLLASI-NKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~ 97 (359)
.+.+++|.+.+..|+.+ ...+.|..+++........+......+..+++.+.+ +++++-+..+.|.+.++.... ...
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~ 428 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKI 428 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEE
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEE
Confidence 35789999865555544 457889999987544333344444567899998754 455555677899999987543 333
Q ss_pred Ee-ccCCCeEEEEEcCCCCEEEEEeC--CCeEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEc-CCcEEEEcC
Q 041916 98 ML-CHQGPVSALAFHPNGHLMATSGK--ECKIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGT-GSFVQILGD 168 (359)
Q Consensus 98 ~~-~h~~~v~~i~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~-d~~i~i~d~ 168 (359)
+. ..-...++|+++|...+|+.+.. ...|...++.......... ..++.|++++++ ++.+.. .+.|..+++
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 32 33446789999997555555542 3677777775432221112 356889999855 555554 478888886
Q ss_pred CC
Q 041916 169 FS 170 (359)
Q Consensus 169 ~~ 170 (359)
..
T Consensus 509 dG 510 (619)
T 3s94_A 509 DG 510 (619)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 317
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.90 E-value=0.15 Score=43.81 Aligned_cols=162 Identities=4% Similarity=-0.041 Sum_probs=91.7
Q ss_pred EEEEecCCCEEEEEe----cCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCcceEE
Q 041916 23 KLQFLRNHFLLASIN----KFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHS-GGTVTMWKPTTAAPLIK 97 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~-dg~v~lwd~~~~~~~~~ 97 (359)
+..|++++..|+-.. ....|...++.. .....+..+.. .+|+|++..|+-.+. ...|.+.++..+.....
T Consensus 108 ~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 108 CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 447888888888765 345677777763 33444544432 456778887776654 67788888876543332
Q ss_pred EeccCCCeEEEEEcCCCCEEEEEeCC--CeEEEEEcCCceeeEeccCCceeEEEcCCc--eEEEEc--CCcEEEEcCCCC
Q 041916 98 MLCHQGPVSALAFHPNGHLMATSGKE--CKIKIWDLRKYEVLQTLPGHAKTLDFSQKG--LLAVGT--GSFVQILGDFSG 171 (359)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~~~~~d--~~i~iwd~~~~~~~~~~~~~i~~~~~s~~g--l~~~~~--d~~i~i~d~~~~ 171 (359)
+. +... ..++|++.+|+-...+ ..|..-++............+ ..|+|++ ++.+.. .+.|...++. +
T Consensus 183 ~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~D-G 255 (302)
T 3s25_A 183 YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--EHYNVYGSLIFYQRGGDNPALCVVKND-G 255 (302)
T ss_dssp EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--EEEEEETTEEEEEECSSSCEEEEEETT-S
T ss_pred eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--ceEEECCCEEEEEECCCCcEEEEEECC-C
Confidence 22 3333 3466999998877643 367666776544322223344 3477777 444332 3567776643 3
Q ss_pred CCccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 172 SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 172 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
.....+... .+. .+++.+.+|.-..
T Consensus 256 -~~r~~l~~~------~~~--~i~i~~d~Iy~td 280 (302)
T 3s25_A 256 -TGFKELAKG------EFC--NINVTSQYVYFTD 280 (302)
T ss_dssp -CCCEEEEES------CEE--EEEECSSEEEEEE
T ss_pred -CccEEeeCC------ccc--eEEEeCCEEEEEE
Confidence 222333222 232 4566777665544
No 318
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.90 E-value=0.13 Score=44.04 Aligned_cols=139 Identities=11% Similarity=0.085 Sum_probs=71.1
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCcceE
Q 041916 29 NHFLLASINKF-----GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSGG-----TVTMWKPTTAAPLI 96 (359)
Q Consensus 29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~dg-----~v~lwd~~~~~~~~ 96 (359)
++.+++.|+.+ ..+.+||+.+.+-... +........++. -++.+++.|+.++ .+.+||+.+.+-..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66777777754 4688999987653222 111111122222 2567777777553 47788887654211
Q ss_pred --EEeccCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEEcCCcee--eEeccCC--ceeEEEcCCc-eEEEEcC--
Q 041916 97 --KMLCHQGPVSALAFHPNGHLMATSGKE-------CKIKIWDLRKYEV--LQTLPGH--AKTLDFSQKG-LLAVGTG-- 160 (359)
Q Consensus 97 --~~~~h~~~v~~i~~~~~~~~l~~~~~d-------~~i~iwd~~~~~~--~~~~~~~--i~~~~~s~~g-l~~~~~d-- 160 (359)
.+........++.+ ++.+++.|+.+ ..+.+||+.+.+- +..++.+ -.+++...+. ++.+|.+
T Consensus 139 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 216 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP 216 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSS
T ss_pred cCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCC
Confidence 11111111122222 55666666532 3588999987543 3333221 1233333333 4445443
Q ss_pred ---CcEEEEcCCCC
Q 041916 161 ---SFVQILGDFSG 171 (359)
Q Consensus 161 ---~~i~i~d~~~~ 171 (359)
+.+.+||+.+.
T Consensus 217 ~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 217 LVRKSVEVYDPTTN 230 (302)
T ss_dssp SBCCCEEEEETTTT
T ss_pred cccceEEEEeCCCC
Confidence 46888987654
No 319
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.89 E-value=0.058 Score=47.64 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=57.4
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCcc---eEEE----eccCCCeEEEEEcCC---CCEEEEEe-C------
Q 041916 61 GRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTAAP---LIKM----LCHQGPVSALAFHPN---GHLMATSG-K------ 122 (359)
Q Consensus 61 ~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~~~---~~~~----~~h~~~v~~i~~~~~---~~~l~~~~-~------ 122 (359)
.....|+|.|+|+ +++ +...|.|.+++.. +.. +..+ ....+....|+|+|+ +.+|+++. .
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4578999999998 554 5567999999853 321 1111 112345689999996 55555443 2
Q ss_pred -CCeEEEEEcCCc-------eee-Eecc------CCceeEEEcCCc-eEEEE
Q 041916 123 -ECKIKIWDLRKY-------EVL-QTLP------GHAKTLDFSQKG-LLAVG 158 (359)
Q Consensus 123 -d~~i~iwd~~~~-------~~~-~~~~------~~i~~~~~s~~g-l~~~~ 158 (359)
...|..|++... +.+ ..++ .....|+|.|+| |+++.
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 235777766432 111 1222 124689999999 54443
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.86 E-value=0.24 Score=44.52 Aligned_cols=169 Identities=10% Similarity=0.111 Sum_probs=107.6
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGL----GRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~sp~~~~ 74 (359)
++.|+| .+...+..+.-..++.--.|-.+. .|+-.+ +..|+-|++.. ..++..|.-|. ..|.....+++.++
T Consensus 87 ~lQiFnle~K~klks~~~~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW 164 (494)
T 1bpo_A 87 TLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (494)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred eEEEEchHHhhhhcceecCCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCe
Confidence 367888 677777777766676555665443 444443 45899999964 34666666543 45777778888887
Q ss_pred EEEEe-------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCC---CCEEEEEeCC---CeEEEEEcCCc---e---
Q 041916 75 VSLGH-------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPN---GHLMATSGKE---CKIKIWDLRKY---E--- 135 (359)
Q Consensus 75 l~sg~-------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~~~~~d---~~i~iwd~~~~---~--- 135 (359)
++..+ -.|.+.+|....+ .-+.+.+|.+....+.+..+ ...++.+... +.+.+.++... .
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f 243 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 243 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCC
T ss_pred EEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCc
Confidence 66543 2478899997644 45567788765544443221 1244444432 78999998542 1
Q ss_pred ---eeEec------cCCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916 136 ---VLQTL------PGHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 136 ---~~~~~------~~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~ 172 (359)
.+..+ ..-..++..|+.- ++..+.-|.|++||+.++.
T Consensus 244 ~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt 291 (494)
T 1bpo_A 244 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (494)
T ss_dssp CCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred cceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccce
Confidence 11111 1234677777765 7888899999999998883
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.85 E-value=0.2 Score=43.34 Aligned_cols=169 Identities=10% Similarity=0.119 Sum_probs=104.3
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCE
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTM-GEIVGNFRTGL----GRTDVMRVNPFNGV 74 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~----~~v~~~~~sp~~~~ 74 (359)
++.|+| .+...+..+.-...+.--.|-.+. .|+-.+ +..|+-|++.. ..++..+.-|. ..|.....+++.+.
T Consensus 88 ~LQiFnletK~klks~~~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW 165 (365)
T 2xzh_A 88 TLQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKW 165 (365)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred eEEEechHHhhhhcceecCCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCE
Confidence 367888 666677777666666656675544 344443 45899999974 34566665443 35677777888887
Q ss_pred EEEEe-------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEcC--C-CCEEEEEeC---CCeEEEEEcCCc---ee--
Q 041916 75 VSLGH-------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHP--N-GHLMATSGK---ECKIKIWDLRKY---EV-- 136 (359)
Q Consensus 75 l~sg~-------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~--~-~~~l~~~~~---d~~i~iwd~~~~---~~-- 136 (359)
++..+ -.|.+.+|....+ .-+.+.+|.+....+.+.- . ..+++.+.. .+.+.+-++... .+
T Consensus 166 ~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f 244 (365)
T 2xzh_A 166 LLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF 244 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCC
T ss_pred EEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCc
Confidence 66543 2477899987643 4556677765443333221 1 123443332 258899988432 11
Q ss_pred ----eEec-c-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916 137 ----LQTL-P-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 137 ----~~~~-~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~ 172 (359)
+..+ + .-..++..|+.- ++..+.-|.|++||+.++.
T Consensus 245 ~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 245 PKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp CCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred ccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 1111 1 224677777754 7888899999999998883
No 322
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.84 E-value=0.35 Score=49.74 Aligned_cols=210 Identities=13% Similarity=0.078 Sum_probs=120.1
Q ss_pred eEEEe-CCCcEEEEecc--CCCeEEEEEec---C-CCEEEEEe----------cCCeEEEEECCCCeEEEEEe-cCCCCe
Q 041916 2 PYIYN-RDGTELHCLKE--HGAVLKLQFLR---N-HFLLASIN----------KFGQLRYQDVTMGEIVGNFR-TGLGRT 63 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~--h~~~~~l~~s~---~-~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~-~~~~~v 63 (359)
|+++| .+.+.+..+.- ...+.|++... + ..+|++|. ..|.|.+|++..++...... ...++|
T Consensus 809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v 888 (1158)
T 3ei3_A 809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV 888 (1158)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence 67888 66777665543 33345555432 2 46888776 34889999997554322221 235788
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEc--CCceeeEe--
Q 041916 64 DVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDL--RKYEVLQT-- 139 (359)
Q Consensus 64 ~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~--~~~~~~~~-- 139 (359)
++++-- +| +|++|- ...|++|++...+.+..-..+-..|..+.....++++++|..-..|.++.. ..++....
T Consensus 889 ~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~ 965 (1158)
T 3ei3_A 889 YSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR 965 (1158)
T ss_dssp EEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred EEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence 888743 34 455443 468999999866544411111112333333335778988887776666543 33332221
Q ss_pred -c-cCCceeEEEcCCc-eEEEEcCCcEEEEcCCCCC------Ccccee-ecccCCCCcceEEEEE---eeC---------
Q 041916 140 -L-PGHAKTLDFSQKG-LLAVGTGSFVQILGDFSGS------HNYSRY-MGHSMVKGYQIGKVSF---RPY--------- 197 (359)
Q Consensus 140 -~-~~~i~~~~~s~~g-l~~~~~d~~i~i~d~~~~~------~~~~~~-~~~~~~~~~~v~~~~~---~p~--------- 197 (359)
+ +..++++.+-.++ ++++..+|.|.++...... ..+... .-| -+..|+++.- .+.
T Consensus 966 D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fh---lG~~vt~~~~~sl~~~~~~~~~~~~ 1042 (1158)
T 3ei3_A 966 DFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFH---LGEFVNVFCHGSLVMQNLGETSTPT 1042 (1158)
T ss_dssp CCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEE---CSSCEEEEEECCSCCC-------CE
T ss_pred ecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEe---CCCcEeeEEeeeeecCCCccccccc
Confidence 1 4467888887667 7777778999888643311 111111 112 2346777652 222
Q ss_pred CCEEEEEcCCCeEEEEEcCC
Q 041916 198 EDVLGIGHSMGWSSILVPGS 217 (359)
Q Consensus 198 ~~~l~~~~~dg~~~i~~~~~ 217 (359)
...++.|+.+|.+.++++-+
T Consensus 1043 ~~~il~~T~~GsIg~l~pl~ 1062 (1158)
T 3ei3_A 1043 QGSVLFGTVNGMIGLVTSLS 1062 (1158)
T ss_dssp EEEEEEEETTSCEEEEEEEC
T ss_pred cceEEEEecCCEEEEEEEcC
Confidence 23477788888888877764
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.82 E-value=0.043 Score=48.47 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=79.0
Q ss_pred CCeEEEEEecCCC-EEEEEecCCeEEEEECCCCeEEEEEe-------cCCCCeEEEEEcCC---CCEEEEE-eC------
Q 041916 19 GAVLKLQFLRNHF-LLASINKFGQLRYQDVTMGEIVGNFR-------TGLGRTDVMRVNPF---NGVVSLG-HS------ 80 (359)
Q Consensus 19 ~~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~sp~---~~~l~sg-~~------ 80 (359)
..+..|+|.|+|. +++ +...|.|++++.. +.....+. ........|+|+|+ +..|+.+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4569999999998 554 4567999999853 43221111 12345689999996 4444433 22
Q ss_pred -CCeEEEEeCCCCc----ceEE-Eecc------CCCeEEEEEcCCCCEEEEEeC-------------CCeEEEEEcCCce
Q 041916 81 -GGTVTMWKPTTAA----PLIK-MLCH------QGPVSALAFHPNGHLMATSGK-------------ECKIKIWDLRKYE 135 (359)
Q Consensus 81 -dg~v~lwd~~~~~----~~~~-~~~h------~~~v~~i~~~~~~~~l~~~~~-------------d~~i~iwd~~~~~ 135 (359)
...|..|++.... .... +..- ...-..|+|.|||.+.++.+. .|.|.-+|....-
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 2356667665331 1111 1111 112357999999965555433 2467777765321
Q ss_pred --------------eeEec-cCCceeEEEcC-Cc-eEEEEc
Q 041916 136 --------------VLQTL-PGHAKTLDFSQ-KG-LLAVGT 159 (359)
Q Consensus 136 --------------~~~~~-~~~i~~~~~s~-~g-l~~~~~ 159 (359)
.+... -.....++|+| +| ++++..
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEec
Confidence 11111 12468899999 67 666554
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.052 Score=47.47 Aligned_cols=111 Identities=9% Similarity=0.110 Sum_probs=73.5
Q ss_pred CEEEEEecCCeEEEEECCCCeEEEEEecC-CCCeEEEEE--cC-CCCEEEEE-eCCCeEEEEeCCCCcceEEEec----c
Q 041916 31 FLLASINKFGQLRYQDVTMGEIVGNFRTG-LGRTDVMRV--NP-FNGVVSLG-HSGGTVTMWKPTTAAPLIKMLC----H 101 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--sp-~~~~l~sg-~~dg~v~lwd~~~~~~~~~~~~----h 101 (359)
.+++.++.||.|.-+|..+|+.+..+... ..++....- .+ ++..++.. +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46888999999999999999999998764 123222110 01 22333333 5899999999888754443331 1
Q ss_pred CCCeEE---EEE-c----CCCCEEEEEeCCCeEEEEEcCCceeeEecc
Q 041916 102 QGPVSA---LAF-H----PNGHLMATSGKECKIKIWDLRKYEVLQTLP 141 (359)
Q Consensus 102 ~~~v~~---i~~-~----~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 141 (359)
..++.. ..+ . ..+..+++|+.+|.+...|+++|+.+..+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~ 138 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG 138 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 222221 001 0 145578999999999999999999999883
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.59 E-value=0.11 Score=44.59 Aligned_cols=165 Identities=15% Similarity=0.057 Sum_probs=80.8
Q ss_pred eEEEeCCCcEEEEeccCCC--e-EEEEEecCCCEEEEEec----C-----CeEEEEECCCCeEEEE--EecCCCCeEEEE
Q 041916 2 PYIYNRDGTELHCLKEHGA--V-LKLQFLRNHFLLASINK----F-----GQLRYQDVTMGEIVGN--FRTGLGRTDVMR 67 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~--~-~~l~~s~~~~~l~s~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~ 67 (359)
+++||.....-..+..-.. . .+++. .++.+++.|+. + ..+.+||+.+..-... +........++.
T Consensus 41 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 119 (308)
T 1zgk_A 41 LEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV 119 (308)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred EEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE
Confidence 5667733333333332221 1 33333 25667777765 2 4688999887653221 111111122222
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEeCCCCcce--EEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916 68 VNPFNGVVSLGHSG-----GTVTMWKPTTAAPL--IKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE 135 (359)
Q Consensus 68 ~sp~~~~l~sg~~d-----g~v~lwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 135 (359)
+ ++.+++.|+.+ ..+.+||+.+.+-. ..+......-.++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 120 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 120 I--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp E--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred E--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 2 56677776643 35888898765321 111111111122333 56666666654 468899988754
Q ss_pred e--eEeccCC--ceeEEEcCCc-eEEEEcC-----CcEEEEcCCCC
Q 041916 136 V--LQTLPGH--AKTLDFSQKG-LLAVGTG-----SFVQILGDFSG 171 (359)
Q Consensus 136 ~--~~~~~~~--i~~~~~s~~g-l~~~~~d-----~~i~i~d~~~~ 171 (359)
- +..++.+ -.+++...+. ++.+|.+ ..+.+||+.+.
T Consensus 196 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp EEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EeeCCCCCCccccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 3 2222211 1233333333 4445443 56889987654
No 326
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.52 E-value=0.16 Score=43.34 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=56.6
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcceE
Q 041916 29 NHFLLASINKF-----GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTAAPLI 96 (359)
Q Consensus 29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~~~~~ 96 (359)
++.+++.|+.+ ..+.+||+.+..-.. .+........++. -++.+++.|+.+ ..+.+||+.+.+-..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56777777643 468999988765332 2221111222222 256777777654 358889987653221
Q ss_pred E--EeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916 97 K--MLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE 135 (359)
Q Consensus 97 ~--~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 135 (359)
. +........++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 190 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 1 1111111122222 56666777653 468999998754
No 327
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.50 E-value=0.62 Score=44.49 Aligned_cols=190 Identities=11% Similarity=-0.036 Sum_probs=110.5
Q ss_pred CeEEEEEecCCCEEEEEe-cCCeEEEEECCCCeEEEEEec------CCCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCC
Q 041916 20 AVLKLQFLRNHFLLASIN-KFGQLRYQDVTMGEIVGNFRT------GLGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~ 91 (359)
.+..++|.+....|+.+. ..+.|..+++........+.. ....+..|++.+.+. ++.+-+..+.|.+.++.
T Consensus 341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~- 419 (628)
T 4a0p_A 341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD- 419 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-
T ss_pred CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-
Confidence 357899998766665554 467888888764332223322 234688999998765 44566677899999986
Q ss_pred CcceEEEe-ccCCCeEEEEEcC-CCCEEEEEeCCC--eEEEEEcCCceeeEecc---CCceeEEEcCCc--eEEEEc-CC
Q 041916 92 AAPLIKML-CHQGPVSALAFHP-NGHLMATSGKEC--KIKIWDLRKYEVLQTLP---GHAKTLDFSQKG--LLAVGT-GS 161 (359)
Q Consensus 92 ~~~~~~~~-~h~~~v~~i~~~~-~~~~l~~~~~d~--~i~iwd~~~~~~~~~~~---~~i~~~~~s~~g--l~~~~~-d~ 161 (359)
+.....+. ......++|+++| .|.++.+-.... .|...++.......... ..++.|++++.+ ++.+.. .+
T Consensus 420 G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~ 499 (628)
T 4a0p_A 420 GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLR 499 (628)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCC
Confidence 44443433 3345679999999 454444433232 57666765432222222 346899999875 555544 47
Q ss_pred cEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcC
Q 041916 162 FVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPG 216 (359)
Q Consensus 162 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~ 216 (359)
.|..+++... ....+... ......+++... +.++.+-...+.+..+...
T Consensus 500 ~I~~~~~dG~--~r~~~~~~---~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 500 RIESSDLSGA--NRIVLEDS---NILQPVGLTVFE-NWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp EEEEEETTSC--SCEEEECS---SCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred EEEEEeCCCC--ceEEEEcC---CCCCcEEEEEEC-CEEEEEECCCCeEEEEECc
Confidence 8999986332 23333321 111356676654 4444444444544444433
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.49 E-value=0.17 Score=43.12 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=55.1
Q ss_pred CCCEEEEEecCC-----eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-------CeEEEEeCCCCcc
Q 041916 29 NHFLLASINKFG-----QLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-------GTVTMWKPTTAAP 94 (359)
Q Consensus 29 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-------g~v~lwd~~~~~~ 94 (359)
++.+++.|+.++ .+.+||+.+..-... +....... +++. -++.+++.|+.+ ..+.+||+.+.+-
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 567777777553 578899887653322 11111111 2222 256667766542 3488899876532
Q ss_pred eE--EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916 95 LI--KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE 135 (359)
Q Consensus 95 ~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 135 (359)
.. .+........++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 11 11111111122222 56667777654 368999998754
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.44 E-value=0.49 Score=42.60 Aligned_cols=167 Identities=9% Similarity=0.075 Sum_probs=101.3
Q ss_pred eEEEeC--CCcEEEEeccCCCe-----EEEEEecCCCEEEEEec-------CCeEEEEECCCCeEEEEEecCCCCeEEEE
Q 041916 2 PYIYNR--DGTELHCLKEHGAV-----LKLQFLRNHFLLASINK-------FGQLRYQDVTMGEIVGNFRTGLGRTDVMR 67 (359)
Q Consensus 2 v~iwd~--~g~~~~~l~~h~~~-----~~l~~s~~~~~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 67 (359)
||-|+- +..+++.+..|..- ..-..+++.+.++..|- .|.+.+|.++.+ ....+.+|.+....+.
T Consensus 127 VyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~ 205 (494)
T 1bpo_A 127 VYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFK 205 (494)
T ss_dssp EEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEE
T ss_pred eEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEe
Confidence 788983 34577888877652 33344667777665432 478899998754 4566777755444443
Q ss_pred EcCCC---CEEEEEeC---CCeEEEEeCCCC---cc-e--EEEe------ccCCCeEEEEEcCCCCEEEEEeCCCeEEEE
Q 041916 68 VNPFN---GVVSLGHS---GGTVTMWKPTTA---AP-L--IKML------CHQGPVSALAFHPNGHLMATSGKECKIKIW 129 (359)
Q Consensus 68 ~sp~~---~~l~sg~~---dg~v~lwd~~~~---~~-~--~~~~------~h~~~v~~i~~~~~~~~l~~~~~d~~i~iw 129 (359)
...+. .+++.+.. .+.+++.++... .+ . .... .-.+---++.+++.-..++..+.-|.|.+|
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~ly 285 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEE
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEE
Confidence 32111 23444443 378999998543 11 1 1111 113334578888888889999999999999
Q ss_pred EcCCceeeEec---cCCceeEEEcC-Cc-eEEEEcCCcEEEEcCC
Q 041916 130 DLRKYEVLQTL---PGHAKTLDFSQ-KG-LLAVGTGSFVQILGDF 169 (359)
Q Consensus 130 d~~~~~~~~~~---~~~i~~~~~s~-~g-l~~~~~d~~i~i~d~~ 169 (359)
|+.++.++..- ...|..-+.+. .+ ++++...|.|.-..+.
T Consensus 286 DleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~ 330 (494)
T 1bpo_A 286 DLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 330 (494)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred ecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEc
Confidence 99999987655 33443333322 22 7777766766555443
No 330
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.20 E-value=0.39 Score=41.23 Aligned_cols=143 Identities=11% Similarity=0.052 Sum_probs=71.8
Q ss_pred EEecCCCEEEEEec-----C------CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC--------Ce
Q 041916 25 QFLRNHFLLASINK-----F------GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG--------GT 83 (359)
Q Consensus 25 ~~s~~~~~l~s~~~-----d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d--------g~ 83 (359)
+...++.+++.|+. . ..+.+||+.+++-... +...... .+++.. ++.+++.|+.+ ..
T Consensus 41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~ 118 (315)
T 4asc_A 41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL-FGLGEA-LNSIYVVGGREIKDGERCLDS 118 (315)
T ss_dssp EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES-CEEEEE-TTEEEEECCEESSTTCCBCCC
T ss_pred EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc-eeEEEE-CCEEEEEeCCcCCCCCcccce
Confidence 33456777787773 1 2378899887753221 1111111 122222 55667777632 35
Q ss_pred EEEEeCCCCcc--eEEEeccCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEEcCCce--eeEeccCC--ceeEEEcC
Q 041916 84 VTMWKPTTAAP--LIKMLCHQGPVSALAFHPNGHLMATSGK-E-----CKIKIWDLRKYE--VLQTLPGH--AKTLDFSQ 151 (359)
Q Consensus 84 v~lwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~-d-----~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~ 151 (359)
+.+||+.+.+- +..+......-.++. -++.+++.|+. + ..+.+||+.+.+ .+..++.+ -.+++...
T Consensus 119 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 196 (315)
T 4asc_A 119 VMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196 (315)
T ss_dssp EEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEET
T ss_pred EEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEEC
Confidence 88899876531 111111111112222 35566666665 2 468999998754 23333221 12333333
Q ss_pred Cc-eEEEEcCC-----cEEEEcCCCC
Q 041916 152 KG-LLAVGTGS-----FVQILGDFSG 171 (359)
Q Consensus 152 ~g-l~~~~~d~-----~i~i~d~~~~ 171 (359)
+. ++.+|.++ .+.+||+.+.
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CEEEEEeccCCCCccceEEEEECCCC
Confidence 33 55566543 5888987654
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.19 E-value=1 Score=43.92 Aligned_cols=177 Identities=11% Similarity=0.008 Sum_probs=100.7
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcc
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTG------LGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAP 94 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~ 94 (359)
+.++...+++.+.+ |+.. -|..+|..++.... +... ...|.++...+++..|..|+. +-+..+|..+++.
T Consensus 148 i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 148 IYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp EEEEEECTTCCEEE-EETT-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred EEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 47777777777655 4444 47788987765432 2211 124788888777765555554 4588889876643
Q ss_pred eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEe---------c-cCCceeEEEcCCc-eEEEEcCCcE
Q 041916 95 LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQT---------L-PGHAKTLDFSQKG-LLAVGTGSFV 163 (359)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~---------~-~~~i~~~~~s~~g-l~~~~~d~~i 163 (359)
..........|.++...++|.+.+. +. +-+.++|..+...... + ...|.++....+| +.+++..| +
T Consensus 224 ~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l 300 (758)
T 3ott_A 224 KQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-I 300 (758)
T ss_dssp EEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-E
T ss_pred EeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-c
Confidence 2211112345888988888876554 44 4588888876543211 1 1247888888888 77777666 5
Q ss_pred EEEcCCCCCCccceeec---ccCCCCcceEEEEEeeCCCEEEEEcCCC
Q 041916 164 QILGDFSGSHNYSRYMG---HSMVKGYQIGKVSFRPYEDVLGIGHSMG 208 (359)
Q Consensus 164 ~i~d~~~~~~~~~~~~~---~~~~~~~~v~~~~~~p~~~~l~~~~~dg 208 (359)
.++.. .. ....+.. ........|.++.-..+|.+.+. +.+|
T Consensus 301 ~~~~~-~~--~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G 344 (758)
T 3ott_A 301 SLSRY-NS--ALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG 344 (758)
T ss_dssp EEECC-CC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE
T ss_pred ccccc-CC--ceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc
Confidence 55542 21 1111110 00002235788877777765443 3444
No 332
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.97 E-value=1.3 Score=43.17 Aligned_cols=182 Identities=10% Similarity=-0.027 Sum_probs=105.2
Q ss_pred eEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEe-c-----CCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--
Q 041916 21 VLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFR-T-----GLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTA-- 92 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~-- 92 (359)
+.++.-.++|.+-+ |+ ++-|..||..+++...-.. . ....|.++...+++.+.+ |+..+-|.++|..+.
T Consensus 375 v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~ 451 (758)
T 3ott_A 375 IRHIYEDKEQQLWI-AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQ 451 (758)
T ss_dssp EEEEEECTTSCEEE-EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHH
T ss_pred eEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccc
Confidence 46676666776544 44 4569999998876543221 1 123578888777776554 665555788885421
Q ss_pred ---cce---EEEec----cCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec------cCCceeEEEcCCc-eE
Q 041916 93 ---APL---IKMLC----HQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL------PGHAKTLDFSQKG-LL 155 (359)
Q Consensus 93 ---~~~---~~~~~----h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~~i~~~~~s~~g-l~ 155 (359)
... ..+.. ....|.+|...++|.+.+.++..+-|..+|..+++..... ...+.++....+| +.
T Consensus 452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lW 531 (758)
T 3ott_A 452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLW 531 (758)
T ss_dssp CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEE
T ss_pred cCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEE
Confidence 111 11111 1235899999999987764343455888999876544322 1246788888888 66
Q ss_pred EEEcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEE
Q 041916 156 AVGTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSS 211 (359)
Q Consensus 156 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~ 211 (359)
.++. +-|..|+..+.. ...+..... +...|.++... +| .|-.++..|...
T Consensus 532 igt~-~Gl~~~~~~~~~--~~~~~~~gl-~~~~i~~i~~~-~g-~lWi~t~~Gl~~ 581 (758)
T 3ott_A 532 VGFH-GGVMRINPKDES--QQSISFGSF-SNNEILSMTCV-KN-SIWVSTTNGLWI 581 (758)
T ss_dssp EEET-TEEEEECC--CC--CCBCCCCC----CCEEEEEEE-TT-EEEEEESSCEEE
T ss_pred EEec-CceEEEecCCCc--eEEecccCC-CccceEEEEEC-CC-CEEEECCCCeEE
Confidence 6665 458888865442 222211111 23357777653 55 455556777543
No 333
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=95.92 E-value=0.42 Score=40.76 Aligned_cols=139 Identities=10% Similarity=0.066 Sum_probs=69.8
Q ss_pred CCCEEEEEecC------CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeC---------CCeEEEEeCCC
Q 041916 29 NHFLLASINKF------GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHS---------GGTVTMWKPTT 91 (359)
Q Consensus 29 ~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~---------dg~v~lwd~~~ 91 (359)
++.+++.|+.+ ..+.+||+.+..-... +........++. -++.+++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 66777777754 5689999987753322 111111112222 25666666653 34588999877
Q ss_pred CcceE--EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce--eeEeccCC--ceeEEEcCCc-eEEEEc
Q 041916 92 AAPLI--KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE--VLQTLPGH--AKTLDFSQKG-LLAVGT 159 (359)
Q Consensus 92 ~~~~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~~g-l~~~~~ 159 (359)
.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+ .+..++.+ -.+++...+. ++.+|.
T Consensus 179 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 256 (306)
T 3ii7_A 179 ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGF 256 (306)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEEEEECB
T ss_pred CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEEEEeCc
Confidence 63211 11111111122222 56666666543 468899998754 33333211 1222222222 444553
Q ss_pred C-----CcEEEEcCCCC
Q 041916 160 G-----SFVQILGDFSG 171 (359)
Q Consensus 160 d-----~~i~i~d~~~~ 171 (359)
+ +.+.+||+.+.
T Consensus 257 ~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 257 QGVGRLGHILEYNTETD 273 (306)
T ss_dssp CSSSBCCEEEEEETTTT
T ss_pred CCCeeeeeEEEEcCCCC
Confidence 3 45777776543
No 334
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.81 E-value=2 Score=44.10 Aligned_cols=185 Identities=11% Similarity=-0.054 Sum_probs=101.9
Q ss_pred CCCeEEEEEecC------CCEEEEEec-CCeEEEEECCCCeEEEEEecC-CCCeEEEEEc--CCCCEEEEEeCCCeEEEE
Q 041916 18 HGAVLKLQFLRN------HFLLASINK-FGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVN--PFNGVVSLGHSGGTVTMW 87 (359)
Q Consensus 18 h~~~~~l~~s~~------~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s--p~~~~l~sg~~dg~v~lw 87 (359)
...+.|+++.|. +.++|.|.. |++|+|+++.+.+.+....-. ...+.++.+. ....+|.+|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 345689998763 368999986 999999999987766543321 1233444332 233578899999997655
Q ss_pred eC--CCCcceEE--EeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEecc-CCc-eeEEEc----CCceEEE
Q 041916 88 KP--TTAAPLIK--MLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTLP-GHA-KTLDFS----QKGLLAV 157 (359)
Q Consensus 88 d~--~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~i-~~~~~s----~~gl~~~ 157 (359)
.+ .++..... ..-...++.-..|...|..-+.++.+....+|--...-....+. ..+ ....|+ |+|++.+
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~ 712 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALA 712 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEEEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEEEE
Confidence 54 44543221 11123455544554444443333334554455433221222222 123 333453 4455544
Q ss_pred EcCCcEEEEcCCCCCCccceeecccCCCCcceEEEEEeeCCCEEEEEcCC
Q 041916 158 GTGSFVQILGDFSGSHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSM 207 (359)
Q Consensus 158 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~d 207 (359)
+ ++.++|..+..-......... -+..+..++++|..+.++++..+
T Consensus 713 ~-~~~LrI~~i~~~~~~~~~~ip----L~~Tprri~y~~~~~~~~v~~~~ 757 (1158)
T 3ei3_A 713 N-NSTLTIGTIDEIQKLHIRTVP----LYESPRKICYQEVSQCFGVLSSR 757 (1158)
T ss_dssp C-SSCEEEEEECCSSSEEEEEEE----CSSEEEEEEEEGGGTEEEEEEEE
T ss_pred c-CCceEEEEecccCCeeEEEEe----CCCCceEEEEcCCCCEEEEEEEe
Confidence 4 566888875433211111111 23378999999999887765543
No 335
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.76 E-value=0.42 Score=41.03 Aligned_cols=103 Identities=9% Similarity=0.073 Sum_probs=55.2
Q ss_pred CCCEEEEEecC--------CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeC-C-----CeEEEEeCCCC
Q 041916 29 NHFLLASINKF--------GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHS-G-----GTVTMWKPTTA 92 (359)
Q Consensus 29 ~~~~l~s~~~d--------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~-d-----g~v~lwd~~~~ 92 (359)
++.+++.|+.+ ..+.+||+.+++-.. .+...... .+++. -++.+++.|+. + ..+.+||+.+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 56666777632 468999998765322 11111111 12222 35567777765 2 35889998765
Q ss_pred cc--eEEEeccCCCeEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCce
Q 041916 93 AP--LIKMLCHQGPVSALAFHPNGHLMATSGKEC-----KIKIWDLRKYE 135 (359)
Q Consensus 93 ~~--~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~-----~i~iwd~~~~~ 135 (359)
+- +..+......-.++.+ ++.+++.|+.++ .+.+||+.+.+
T Consensus 176 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 176 EWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred eEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 31 1111111111122222 566777777554 58889998754
No 336
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.50 E-value=0.48 Score=40.50 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=55.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCcce-
Q 041916 29 NHFLLASINKF-----GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-----GTVTMWKPTTAAPL- 95 (359)
Q Consensus 29 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-----g~v~lwd~~~~~~~- 95 (359)
++.+++.|+.+ ..+.+||+.+..-... +........++.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 66777776643 4688999987653221 1111111222222 56777777654 45888998765321
Q ss_pred -EEEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916 96 -IKMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE 135 (359)
Q Consensus 96 -~~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 135 (359)
..+........++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 111111111222333 56666777654 468999998754
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.44 E-value=1.1 Score=38.39 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=70.2
Q ss_pred EecCCCEEEEEec----CC-------eEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCC-------CeEE
Q 041916 26 FLRNHFLLASINK----FG-------QLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSG-------GTVT 85 (359)
Q Consensus 26 ~s~~~~~l~s~~~----dg-------~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~d-------g~v~ 85 (359)
...++.+++.|+. ++ .+.+||..+++-... +...... .+++.. ++.+++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV-DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE-TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE-CCEEEEEcCccCCCCcccceEE
Confidence 3456777888873 11 277889887653221 1111111 122222 56677777754 2478
Q ss_pred EEeCCCCcceEEEeccCCCe--EEEEEcCCCCEEEEEeC------CCeEEEEEcCCce--eeEeccCC--ceeEEEcCCc
Q 041916 86 MWKPTTAAPLIKMLCHQGPV--SALAFHPNGHLMATSGK------ECKIKIWDLRKYE--VLQTLPGH--AKTLDFSQKG 153 (359)
Q Consensus 86 lwd~~~~~~~~~~~~h~~~v--~~i~~~~~~~~l~~~~~------d~~i~iwd~~~~~--~~~~~~~~--i~~~~~s~~g 153 (359)
+||+.+.+-.. +...+.+. .+++. .++.+++.|+. -..+.+||+.+.+ .+..++.+ -.+++...+.
T Consensus 131 ~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 208 (318)
T 2woz_A 131 CYDPVAAKWSE-VKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGK 208 (318)
T ss_dssp EEETTTTEEEE-ECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTE
T ss_pred EEeCCCCCEeE-CCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEECCE
Confidence 88887653211 11111110 11222 35666666653 2358999998754 33333221 1233333333
Q ss_pred -eEEEEcC-----CcEEEEcCCCC
Q 041916 154 -LLAVGTG-----SFVQILGDFSG 171 (359)
Q Consensus 154 -l~~~~~d-----~~i~i~d~~~~ 171 (359)
++.+|.+ ..+.+||+.+.
T Consensus 209 iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 209 IVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEEcCcCCCCccceEEEEECCCC
Confidence 5555532 35778887654
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.38 E-value=0.74 Score=44.58 Aligned_cols=113 Identities=14% Similarity=0.041 Sum_probs=64.4
Q ss_pred EEEEEec-CCCEEEEEecC------CeEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEeCCC--eEEEEeCC
Q 041916 22 LKLQFLR-NHFLLASINKF------GQLRYQDVTMGEIVGN--FRTGLGRTDVMRVNPFNGVVSLGHSGG--TVTMWKPT 90 (359)
Q Consensus 22 ~~l~~s~-~~~~l~s~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l~sg~~dg--~v~lwd~~ 90 (359)
.+++..+ ++.+++.||.+ ..+.+||+.+..-... +..... -.+++...++.+++.|+.++ .+.+||+.
T Consensus 443 hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~ 521 (695)
T 2zwa_A 443 HTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVT 521 (695)
T ss_dssp CEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETT
T ss_pred eEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECC
Confidence 4555554 77777887753 3688999987643221 111111 12333334778888887655 68999987
Q ss_pred CCcceEE-----EeccCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEEEEcCCce
Q 041916 91 TAAPLIK-----MLCHQGPVSALAFHPN-GHLMATSGK--E-----CKIKIWDLRKYE 135 (359)
Q Consensus 91 ~~~~~~~-----~~~h~~~v~~i~~~~~-~~~l~~~~~--d-----~~i~iwd~~~~~ 135 (359)
+..-... +........++.+..+ +.+++.||. + ..+.+||+.+..
T Consensus 522 t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 6532111 1111112233555655 556666665 2 468899998765
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.37 E-value=0.47 Score=49.16 Aligned_cols=168 Identities=10% Similarity=0.112 Sum_probs=95.1
Q ss_pred eEEEe-CCCcEEEEeccCCCeEEEEEecCCCEEEEEecCCeEEEEECCCC-eEEEEEecC----CCCeEEEEEcCCCCEE
Q 041916 2 PYIYN-RDGTELHCLKEHGAVLKLQFLRNHFLLASINKFGQLRYQDVTMG-EIVGNFRTG----LGRTDVMRVNPFNGVV 75 (359)
Q Consensus 2 v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~----~~~v~~~~~sp~~~~l 75 (359)
+.|+| .+...+..+.-...+.--.|-.+. .|+-.+ +..|.-|++... .++..|.-| ...|.....+++.+++
T Consensus 88 lQiFnl~~k~klks~~~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~ 165 (1630)
T 1xi4_A 88 LQIFNIEMKSKMKAHTMTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWL 165 (1630)
T ss_pred EEEeehHHhhhhcccccCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeE
Confidence 45666 444444444444445444554433 343333 458999999632 343334333 3457777778888876
Q ss_pred EEEe-------CCCeEEEEeCCCCcceEEEeccCCCeEEEEEc--C-CCCEEEEEeC---CCeEEEEEcCCc---eee--
Q 041916 76 SLGH-------SGGTVTMWKPTTAAPLIKMLCHQGPVSALAFH--P-NGHLMATSGK---ECKIKIWDLRKY---EVL-- 137 (359)
Q Consensus 76 ~sg~-------~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~--~-~~~~l~~~~~---d~~i~iwd~~~~---~~~-- 137 (359)
+..| -.|.+.+|.+..+ ..+.+.||.+....+... + ....++.+.. .+.+.+-++... .+.
T Consensus 166 ~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 166 LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred EEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence 6433 4588999987644 334456666554444332 1 1223333322 268888888542 111
Q ss_pred ----Eec-c-----CCceeEEEcCCc--eEEEEcCCcEEEEcCCCCC
Q 041916 138 ----QTL-P-----GHAKTLDFSQKG--LLAVGTGSFVQILGDFSGS 172 (359)
Q Consensus 138 ----~~~-~-----~~i~~~~~s~~g--l~~~~~d~~i~i~d~~~~~ 172 (359)
..+ + .-+.++..|+.- ++..+.-|.|++||+.++.
T Consensus 245 kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~ 291 (1630)
T 1xi4_A 245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 291 (1630)
T ss_pred cccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccch
Confidence 111 1 124567777754 7778888999999998874
No 340
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.29 E-value=0.67 Score=40.48 Aligned_cols=52 Identities=12% Similarity=-0.016 Sum_probs=28.5
Q ss_pred CCCEEEEEec-C---------CeEEEEECCCCeEEEEEecC-CCCe-EEEEEcCCCCEEEEEeCC
Q 041916 29 NHFLLASINK-F---------GQLRYQDVTMGEIVGNFRTG-LGRT-DVMRVNPFNGVVSLGHSG 81 (359)
Q Consensus 29 ~~~~l~s~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~~v-~~~~~sp~~~~l~sg~~d 81 (359)
++.+++.|+. + ..+.+||+.+..-...-... .... .+++. .++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 5667777765 2 46899999876532211111 1111 22222 567788888754
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.12 E-value=0.91 Score=38.92 Aligned_cols=104 Identities=11% Similarity=0.091 Sum_probs=53.8
Q ss_pred CCCEEEEEecC-------CeEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCcc
Q 041916 29 NHFLLASINKF-------GQLRYQDVTMGEIVGNFRTGLGR-TDVMRVNPFNGVVSLGHS------GGTVTMWKPTTAAP 94 (359)
Q Consensus 29 ~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~-v~~~~~sp~~~~l~sg~~------dg~v~lwd~~~~~~ 94 (359)
++.+++.|+.+ ..+.+||+.+.+-...-...... -.+++. .++.+++.|+. -..+.+||+.+.+-
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W 187 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW 187 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence 56677777754 35888998876533221111110 112222 35667777763 23588999887542
Q ss_pred eE--EEeccCCCeEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCce
Q 041916 95 LI--KMLCHQGPVSALAFHPNGHLMATSGKE-----CKIKIWDLRKYE 135 (359)
Q Consensus 95 ~~--~~~~h~~~v~~i~~~~~~~~l~~~~~d-----~~i~iwd~~~~~ 135 (359)
.. .+........++.+ ++.+++.|+.+ ..+.+||+.+.+
T Consensus 188 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 188 KDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 11 11111111122222 56667777643 357788987754
No 342
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.12 E-value=2.1 Score=39.83 Aligned_cols=67 Identities=10% Similarity=0.027 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCeEEEEEcCCce------e-------eEec--cCCceeEEEcCCc--eEEEEcCCcEEE
Q 041916 104 PVSALAFHPNGHLMATSG-KECKIKIWDLRKYE------V-------LQTL--PGHAKTLDFSQKG--LLAVGTGSFVQI 165 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~-~d~~i~iwd~~~~~------~-------~~~~--~~~i~~~~~s~~g--l~~~~~d~~i~i 165 (359)
....+.++|||++++.++ .+.++.++|++... . +... .-.....+|.++| +.+.--|+.|.-
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvk 403 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVK 403 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEE
Confidence 346788999999987766 57899999998521 1 1122 2245788999999 333447999999
Q ss_pred EcCCC
Q 041916 166 LGDFS 170 (359)
Q Consensus 166 ~d~~~ 170 (359)
|++..
T Consensus 404 Wni~~ 408 (638)
T 3sbq_A 404 WNMEE 408 (638)
T ss_dssp EEHHH
T ss_pred EeccH
Confidence 99643
No 343
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=94.90 E-value=1.7 Score=37.61 Aligned_cols=191 Identities=13% Similarity=0.172 Sum_probs=117.5
Q ss_pred EEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceEEEecc
Q 041916 23 KLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-AAPLIKMLCH 101 (359)
Q Consensus 23 ~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-~~~~~~~~~h 101 (359)
+.-.+|..+.||.-. ..++.++|+.+...+..+.-. .+|.-=.|-.+.. |+..+ +..|+-|++.. ..|...+..|
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~-L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSE-EEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecC-CccEEEEecCCCe-EEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 344578888887765 679999999999888888754 5777778865543 33332 34799999874 4566666655
Q ss_pred C----CCeEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCceeeEeccCCceeEE-EcCCc------eEEEEc----
Q 041916 102 Q----GPVSALAFHPNGHLMATSGK-------ECKIKIWDLRKYEVLQTLPGHAKTLD-FSQKG------LLAVGT---- 159 (359)
Q Consensus 102 ~----~~v~~i~~~~~~~~l~~~~~-------d~~i~iwd~~~~~~~~~~~~~i~~~~-~s~~g------l~~~~~---- 159 (359)
. ..|..-..+++.++++..|- .|.+.+|..... .-+.++++..+.+ +-.+| +++.+.
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 35777778899999776552 256777777643 2333455554432 22222 443322
Q ss_pred CCcEEEEcCCCC---CCcc-----ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCCC
Q 041916 160 GSFVQILGDFSG---SHNY-----SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGE 219 (359)
Q Consensus 160 d~~i~i~d~~~~---~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~d 219 (359)
++.++|.++... .... ..+..... ...-..++..++....+..-+.-|+++++...++-
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea-~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt 292 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA-QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGT 292 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTC-TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCC
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccc-cCCceEEEEecccCCEEEEEeCCcEEEEEEcccCc
Confidence 268999987432 1111 11111211 12234567778777788888888888777765543
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.24 E-value=1.4 Score=38.47 Aligned_cols=49 Identities=6% Similarity=-0.270 Sum_probs=25.8
Q ss_pred CeEEEEECCCCeEEE--EEecCCCCeEEEEEcCCCCEEEEEeC------CCeEEEEeC
Q 041916 40 GQLRYQDVTMGEIVG--NFRTGLGRTDVMRVNPFNGVVSLGHS------GGTVTMWKP 89 (359)
Q Consensus 40 g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~sp~~~~l~sg~~------dg~v~lwd~ 89 (359)
..+.+||+.+..-.. .+......-.+++.. ++.+++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 579999998765332 222111111233332 4566666653 235777876
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=94.21 E-value=2.2 Score=36.01 Aligned_cols=125 Identities=13% Similarity=0.024 Sum_probs=65.6
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916 39 FGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA 118 (359)
Q Consensus 39 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 118 (359)
||.|..|-......+..-..-...|..++...+.. +.-. ||.|+.|-.+..-.+..-......|..|+...+. .++
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~ 155 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA 155 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE
T ss_pred CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE
Confidence 78888887653211110000123566666554332 2234 8999999755422111111123457777654432 233
Q ss_pred EEeCCCeEEEEEcCCceeeE---eccCCceeEEEcCCceEEEEcCCcEEEEcCCC
Q 041916 119 TSGKECKIKIWDLRKYEVLQ---TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFS 170 (359)
Q Consensus 119 ~~~~d~~i~iwd~~~~~~~~---~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~ 170 (359)
-. ||.|..|-......+. .....|..++......++. .+|.|+.|-...
T Consensus 156 -l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 156 -VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp -EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-ETTEEEEEECCT
T ss_pred -EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE-ECCeEEEEECCC
Confidence 33 7899999765422111 1134567777666664444 689999997433
No 346
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.78 E-value=2.6 Score=43.88 Aligned_cols=189 Identities=12% Similarity=0.148 Sum_probs=106.1
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CcceEEEecc-
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT-AAPLIKMLCH- 101 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~-~~~~~~~~~h- 101 (359)
.-.+|..+.+|.-+ ..++.|||+.+...+.++.-. .+|.--.|-.+..+ +.. .+..|+-|++.. ..|...+..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l-~lV-T~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTV-ALV-TDNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCCee-EEE-cCCeEEEeccCCCCccHHHHhcch
Confidence 34567777777654 679999999987777666643 45766677544433 322 234699999964 3455455544
Q ss_pred ---CCCeEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCceeeEeccCCceeE---EE----cCCceEEEE----cC
Q 041916 102 ---QGPVSALAFHPNGHLMATSG-------KECKIKIWDLRKYEVLQTLPGHAKTL---DF----SQKGLLAVG----TG 160 (359)
Q Consensus 102 ---~~~v~~i~~~~~~~~l~~~~-------~d~~i~iwd~~~~~~~~~~~~~i~~~---~~----s~~gl~~~~----~d 160 (359)
...|..-..+++.++++..| -.|.+.+|....+. -+.+.|+..++ .. .|..+++.+ .+
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 34677777889999977654 23677777765421 11122322111 11 111133322 24
Q ss_pred CcEEEEcCCCC---CCcc-----ceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEEEcCCC
Q 041916 161 SFVQILGDFSG---SHNY-----SRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSG 218 (359)
Q Consensus 161 ~~i~i~d~~~~---~~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~~~~~~ 218 (359)
+.++|.++... .... ..+..... ...-..++..++...++..-+..|++.++...++
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~-~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~ 290 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA-QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG 290 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCccc-ccCcceEEEeccccCEEEEEecCceEEEEecccc
Confidence 78899886432 1111 11111111 1112345666777777777777777777655443
No 347
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.76 E-value=0.26 Score=45.78 Aligned_cols=110 Identities=13% Similarity=0.028 Sum_probs=75.0
Q ss_pred EEEEeccCCCeEEEEEecCCCEEEEEe-cCCeEEEEECCC------Ce-------EEEEEecCCCCeEEEEEcCCCCEEE
Q 041916 11 ELHCLKEHGAVLKLQFLRNHFLLASIN-KFGQLRYQDVTM------GE-------IVGNFRTGLGRTDVMRVNPFNGVVS 76 (359)
Q Consensus 11 ~~~~l~~h~~~~~l~~s~~~~~l~s~~-~dg~i~iwd~~~------~~-------~~~~~~~~~~~v~~~~~sp~~~~l~ 76 (359)
....+.....+..+.++|||++++.++ .+.++.++|+.. ++ .+...... ......+|.++|....
T Consensus 315 ~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYT 393 (638)
T 3sbq_A 315 FTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYT 393 (638)
T ss_dssp SEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEE
T ss_pred eEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEe
Confidence 344555566678999999999887665 488999999873 11 13344433 3456789999996666
Q ss_pred EEeCCCeEEEEeCCCC----------cceEEEeccCCCeEEEEE------cCCCCEEEEEeC
Q 041916 77 LGHSGGTVTMWKPTTA----------APLIKMLCHQGPVSALAF------HPNGHLMATSGK 122 (359)
Q Consensus 77 sg~~dg~v~lwd~~~~----------~~~~~~~~h~~~v~~i~~------~~~~~~l~~~~~ 122 (359)
+-.-|..|.-|++... ..+..+..|-.+- .+.- .|||++|++.+.
T Consensus 394 tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 394 TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEES
T ss_pred eeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCccCCCCccEEEEecc
Confidence 7778999999998642 2345555554432 2333 579999999863
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=93.17 E-value=7.3 Score=39.16 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
.+.+++..++..++++.+.|+++++|++.+++++.+.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4677788888899999999999999999999988765
No 349
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=92.31 E-value=0.21 Score=43.62 Aligned_cols=99 Identities=6% Similarity=-0.005 Sum_probs=64.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCcceEEEecc-CCCeEEEEEc--CCCCEEEEE--eCCCeEEEEEcCCceeeEec--cCCc-
Q 041916 73 GVVSLGHSGGTVTMWKPTTAAPLIKMLCH-QGPVSALAFH--PNGHLMATS--GKECKIKIWDLRKYEVLQTL--PGHA- 144 (359)
Q Consensus 73 ~~l~sg~~dg~v~lwd~~~~~~~~~~~~h-~~~v~~i~~~--~~~~~l~~~--~~d~~i~iwd~~~~~~~~~~--~~~i- 144 (359)
.+++.++.||.|.-+|..+|+....+... ..++....-. +.+..++.+ +.||.|..+|..+|.....+ +.-+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999988887653 1222221100 112234433 58999999999888654444 1111
Q ss_pred -eeEEE------------cCCc-eEEEEcCCcEEEEcCCCC
Q 041916 145 -KTLDF------------SQKG-LLAVGTGSFVQILGDFSG 171 (359)
Q Consensus 145 -~~~~~------------s~~g-l~~~~~d~~i~i~d~~~~ 171 (359)
.-+.. +.+| +++++.+|.+...|+.++
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG 131 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG 131 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTC
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC
Confidence 11221 2455 888999999999998887
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.14 E-value=2.8 Score=38.25 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=59.9
Q ss_pred CCeEEEEEecCCC-EEEEEecCCeEEEEECCCC---eEEEEEe---------cCCCCeEEEEEcCC----CCEEEEEeC-
Q 041916 19 GAVLKLQFLRNHF-LLASINKFGQLRYQDVTMG---EIVGNFR---------TGLGRTDVMRVNPF----NGVVSLGHS- 80 (359)
Q Consensus 19 ~~~~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~---------~~~~~v~~~~~sp~----~~~l~sg~~- 80 (359)
..++.|+|.|++. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4569999999985 3444567899999975422 1222221 11356789999996 333333221
Q ss_pred -C----------CeEEEEeCCCC----------cceEEEe--ccCCCeEEEEEcCCCCEEEEEeC
Q 041916 81 -G----------GTVTMWKPTTA----------APLIKML--CHQGPVSALAFHPNGHLMATSGK 122 (359)
Q Consensus 81 -d----------g~v~lwd~~~~----------~~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~ 122 (359)
+ ..|.-|.+..+ +.+..+. ........|+|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444655421 1222222 11223578999999987776654
No 351
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=91.98 E-value=9.4 Score=36.94 Aligned_cols=189 Identities=10% Similarity=-0.027 Sum_probs=100.0
Q ss_pred EEEE-EecCCCEEEEE-e----cCCeEEEEECCCCeEEE-EEe-cCCC------CeEEEEEcCCCCEEEEEe--------
Q 041916 22 LKLQ-FLRNHFLLASI-N----KFGQLRYQDVTMGEIVG-NFR-TGLG------RTDVMRVNPFNGVVSLGH-------- 79 (359)
Q Consensus 22 ~~l~-~s~~~~~l~s~-~----~dg~i~iwd~~~~~~~~-~~~-~~~~------~v~~~~~sp~~~~l~sg~-------- 79 (359)
..+. ++|++.+++.+ | ....|+++|+.+++.+. .|. .-.+ ....++|..+...+++..
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~ 211 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITS 211 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCc
Confidence 5565 88998876553 2 23589999999998763 111 0000 113458874444444321
Q ss_pred --CCCeEEEEeCCCCc--ceEEEeccCCCe-EEEEEcCCCCE-----EEEEeCC---CeEEEEEcCC--ceeeEec-cCC
Q 041916 80 --SGGTVTMWKPTTAA--PLIKMLCHQGPV-SALAFHPNGHL-----MATSGKE---CKIKIWDLRK--YEVLQTL-PGH 143 (359)
Q Consensus 80 --~dg~v~lwd~~~~~--~~~~~~~h~~~v-~~i~~~~~~~~-----l~~~~~d---~~i~iwd~~~--~~~~~~~-~~~ 143 (359)
....|+.|.+.+.. -...+.+....+ .++..++++.+ +++.+.+ ..+.+.|... +...... +..
T Consensus 212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (711)
T 4hvt_A 212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD 291 (711)
T ss_dssp TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence 12468888876653 233344333332 34555666662 4444422 3566667653 3322222 222
Q ss_pred ceeEEEcCCc-eEEE-----------EcCCcEEEEcCCCCC------CccceeecccCCCCcceEEEEEeeCCCEEEEEc
Q 041916 144 AKTLDFSQKG-LLAV-----------GTGSFVQILGDFSGS------HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGH 205 (359)
Q Consensus 144 i~~~~~s~~g-l~~~-----------~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~ 205 (359)
..+..+.++ ++.. ...+.|...++.... .....+..+. ....+.++.|..+ .++++..
T Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~l~~~~~ 367 (711)
T 4hvt_A 292 -ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPT--ANEVFNFISTTKD-RVFLATY 367 (711)
T ss_dssp -CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCC--TTEEEEEEEECSS-CEEEEEE
T ss_pred -ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCC--CCCeEEEEEEECC-EEEEEEE
Confidence 223345555 3331 135678888865531 2223333332 3446888888875 5677777
Q ss_pred CCCeEEEEE
Q 041916 206 SMGWSSILV 214 (359)
Q Consensus 206 ~dg~~~i~~ 214 (359)
.+|...+.+
T Consensus 368 ~~~~~~l~~ 376 (711)
T 4hvt_A 368 DNVVAKVVT 376 (711)
T ss_dssp ETTEEEEEE
T ss_pred ECCEEEEEE
Confidence 777665544
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.25 E-value=6.3 Score=35.91 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=35.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC---cceEEEe---c------cCCCeEEEEEcCC
Q 041916 60 LGRTDVMRVNPFNG-VVSLGHSGGTVTMWKPTTA---APLIKML---C------HQGPVSALAFHPN 113 (359)
Q Consensus 60 ~~~v~~~~~sp~~~-~l~sg~~dg~v~lwd~~~~---~~~~~~~---~------h~~~v~~i~~~~~ 113 (359)
....+.|+|.|++. .|+++...|.|++++.... .++..+. . ..+....|+|+|+
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 34578999999996 4555678899999975422 1223221 1 1356789999996
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.50 E-value=8.5 Score=37.12 Aligned_cols=72 Identities=11% Similarity=-0.014 Sum_probs=43.6
Q ss_pred EEEEEecCCCEEEEEecCC--eEEEEECCCCeEEEEE-----ecCCCCeEEEEEcCC-CCEEEEEeC--C-----CeEEE
Q 041916 22 LKLQFLRNHFLLASINKFG--QLRYQDVTMGEIVGNF-----RTGLGRTDVMRVNPF-NGVVSLGHS--G-----GTVTM 86 (359)
Q Consensus 22 ~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~sp~-~~~l~sg~~--d-----g~v~l 86 (359)
.+++...++.+++.||.++ .+.+||+.+..-...- ........++.+..+ +.+++.|+. + ..+.+
T Consensus 493 h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~ 572 (695)
T 2zwa_A 493 HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAII 572 (695)
T ss_dssp CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEE
T ss_pred ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEE
Confidence 3444435788888887654 7999999886532211 111122233555555 667777765 2 35888
Q ss_pred EeCCCCc
Q 041916 87 WKPTTAA 93 (359)
Q Consensus 87 wd~~~~~ 93 (359)
||+.+..
T Consensus 573 yd~~~~~ 579 (695)
T 2zwa_A 573 FKYDAEN 579 (695)
T ss_dssp EEECTTC
T ss_pred EEccCCc
Confidence 9988765
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=88.76 E-value=19 Score=36.22 Aligned_cols=38 Identities=8% Similarity=-0.108 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46777888888899999999999999999998887754
No 355
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=83.54 E-value=19 Score=30.20 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=74.7
Q ss_pred CeEEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 20 AVLKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
.+..++....+. ++. . ||.|..|-......+..-......|..++...... ++. . ||.|..|-.+..-.+-.-.
T Consensus 25 ~i~~ia~G~~h~-~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFHG-LAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSEE-EEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCeE-EEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 345555544333 232 4 89999998654221111111123566777654433 333 4 8999999755422111101
Q ss_pred ccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeE---eccCCceeEEEcCCceEEEEcCCcEEEEcCCC
Q 041916 100 CHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQ---TLPGHAKTLDFSQKGLLAVGTGSFVQILGDFS 170 (359)
Q Consensus 100 ~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~i~~~~~s~~gl~~~~~d~~i~i~d~~~ 170 (359)
.-...|..|+...+ +.+... ||.|+.|-....-.+. .....|..++......++.. +|.|+.|-...
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEE-CCEEEEecCCC
Confidence 11346777776544 333334 8999999765422111 11335666666555544445 79999997443
No 356
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.19 E-value=16 Score=37.64 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 104 PVSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 104 ~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
.+.+++..++..++++.+.|+++++||+.+++++.+.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3445666778899999999999999999999988775
No 357
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=79.43 E-value=32 Score=30.27 Aligned_cols=159 Identities=10% Similarity=0.025 Sum_probs=90.5
Q ss_pred eEEEEECCCC--eEEEEEecC------CCCeEEEEEc---CC----CCEEEEE-eCCCeEEEEeCCCCcceEEEe-----
Q 041916 41 QLRYQDVTMG--EIVGNFRTG------LGRTDVMRVN---PF----NGVVSLG-HSGGTVTMWKPTTAAPLIKML----- 99 (359)
Q Consensus 41 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~s---p~----~~~l~sg-~~dg~v~lwd~~~~~~~~~~~----- 99 (359)
.|.+||+.++ +.++.+.-. .+.+..+++. |. +.++..+ +..+-|.|+|+.+++.-+.+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6889999999 888887642 2457788877 32 2343333 356779999998876443321
Q ss_pred ---------cc----CCCeEEEEEcCC----CCEEEEEeCCCeEEEEEcC-----Cc---eeeEec--cC---CceeEEE
Q 041916 100 ---------CH----QGPVSALAFHPN----GHLMATSGKECKIKIWDLR-----KY---EVLQTL--PG---HAKTLDF 149 (359)
Q Consensus 100 ---------~h----~~~v~~i~~~~~----~~~l~~~~~d~~i~iwd~~-----~~---~~~~~~--~~---~i~~~~~ 149 (359)
+. ...|..|+++|+ ++.|+.....+ -++|-+. .. ..+..+ .+ ....+++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 00 246788999997 77887776554 2334332 22 122222 22 2234667
Q ss_pred c-CCc-eEEEE-cCCcEEEEcCCC-CC--CccceeecccCCCCcceEEEEEeeCCCEEE
Q 041916 150 S-QKG-LLAVG-TGSFVQILGDFS-GS--HNYSRYMGHSMVKGYQIGKVSFRPYEDVLG 202 (359)
Q Consensus 150 s-~~g-l~~~~-~d~~i~i~d~~~-~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~ 202 (359)
. .+| ++.+- ..+.|..|+... .- .....+. +.. .-..+.++.+.++|.+.+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~-~d~-~l~~pd~~~i~~~g~Lwv 339 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVY-TSS-RFVFGTDISVDSKGGLWF 339 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEE-ECT-TCCSEEEEEECTTSCEEE
T ss_pred eCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEE-ECC-CccccCeEEECCCCeEEE
Confidence 5 677 44444 568999999654 11 1112222 211 222466677666664433
No 358
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=77.10 E-value=14 Score=34.51 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=39.5
Q ss_pred CCeEEEEEcCCCCEEEEEeC------------CCeEEEEeCCCCcceEEEecc-CCCeEEEEEcCCCCEEEEEe
Q 041916 61 GRTDVMRVNPFNGVVSLGHS------------GGTVTMWKPTTAAPLIKMLCH-QGPVSALAFHPNGHLMATSG 121 (359)
Q Consensus 61 ~~v~~~~~sp~~~~l~sg~~------------dg~v~lwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~~~~ 121 (359)
.....|+|.++|.+.++... ...|..++..+++....+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34668999999987774321 125666677667654444332 24578888888888877654
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=76.39 E-value=11 Score=35.55 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCEEEEEeCC------------CeEEEEeCCCCcceEEEecc-CCCeEEEEEcCCCCEEEEE
Q 041916 63 TDVMRVNPFNGVVSLGHSG------------GTVTMWKPTTAAPLIKMLCH-QGPVSALAFHPNGHLMATS 120 (359)
Q Consensus 63 v~~~~~sp~~~~l~sg~~d------------g~v~lwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~~~ 120 (359)
.-.|+|+|.|.++++-..+ ..+.+.+..+++....+.++ ...++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999877764332 23555566666655545443 3467888888888877665
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=74.76 E-value=18 Score=33.90 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=42.6
Q ss_pred CeEEEEEecCCCEEEEEec------------CCeEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEE
Q 041916 20 AVLKLQFLRNHFLLASINK------------FGQLRYQDVTMGEIVGNFRTG-LGRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 20 ~~~~l~~s~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~sg 78 (359)
.+..|.|.++|.+.+.... ...|..++..+|+....+... ...++.++|+||++.|+++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3478999999987763321 126777787788876666543 3468999999999887765
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=73.97 E-value=14 Score=34.70 Aligned_cols=58 Identities=17% Similarity=0.091 Sum_probs=41.7
Q ss_pred eEEEEEecCCCEEEEEecC------------CeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEE
Q 041916 21 VLKLQFLRNHFLLASINKF------------GQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLG 78 (359)
Q Consensus 21 ~~~l~~s~~~~~l~s~~~d------------g~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg 78 (359)
+=-|+|+|+|.+++.-..+ ..+.+.+..+++...-+.++. ..++.++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999876654322 246677777788766666654 579999999999877654
No 362
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.63 E-value=17 Score=37.33 Aligned_cols=38 Identities=8% Similarity=-0.108 Sum_probs=31.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEe
Q 041916 62 RTDVMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKML 99 (359)
Q Consensus 62 ~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~ 99 (359)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 34556667788899999999999999999998887754
No 363
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=69.87 E-value=72 Score=29.77 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=44.6
Q ss_pred eEEEeCCCcEEEEeccC------------CCe-EEEEEecCCCEEEEEecCCeEEEEECCCCeEEEEEecCCC---CeEE
Q 041916 2 PYIYNRDGTELHCLKEH------------GAV-LKLQFLRNHFLLASINKFGQLRYQDVTMGEIVGNFRTGLG---RTDV 65 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h------------~~~-~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~ 65 (359)
.+|+|.+|..+..+... .+. ....-.++|.+++.-+ ..+...|. .|+.+..+....+ .-+.
T Consensus 177 ~~i~D~~G~lrW~~~~~~~~~~~~~~~~~~g~l~~~~g~~nG~l~~g~G--~~i~elD~-~Gkvv~~~~lp~g~~~~HHD 253 (571)
T 3elq_A 177 TFIVDTEGEYRWWLDQDTFYDGRDRDINKRGYLMGIRETPRGTFTAVQG--QHWYEFDM-MGQVLEDHKLPRGFADATHE 253 (571)
T ss_dssp EEEECTTSCEEEECCGGGTCCSSSCCGGGCSCCEEEEECTTSCEEEEEB--TEEEEECT-TCCEEEEEECCTTEECBCSC
T ss_pred eEEEcCCCcEEEEeCcccccccceeeccCCCeEEEEEecCCCCEEEecC--cEEEEECC-CCcEEEEEECCCCccccccc
Confidence 47888888877665431 112 3333346777665332 35788886 4777776654322 2355
Q ss_pred EEEcCCCCEEEEE
Q 041916 66 MRVNPFNGVVSLG 78 (359)
Q Consensus 66 ~~~sp~~~~l~sg 78 (359)
+...|+|+.|+.+
T Consensus 254 ~~~l~nGn~Lv~v 266 (571)
T 3elq_A 254 SIETPNGTVLLRV 266 (571)
T ss_dssp EEECTTSCEEEEE
T ss_pred eEEcCCCcEEEEE
Confidence 7778889887755
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=64.92 E-value=11 Score=36.17 Aligned_cols=34 Identities=26% Similarity=0.676 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEEcCCceeeEec
Q 041916 105 VSALAFHPNGHLMATSGKECKIKIWDLRKYEVLQTL 140 (359)
Q Consensus 105 v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 140 (359)
|.++.+ +..++++-+.|+++++||+.+++++.+.
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 554444 4679999999999999999999987766
No 365
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=61.68 E-value=83 Score=27.52 Aligned_cols=139 Identities=12% Similarity=0.124 Sum_probs=79.8
Q ss_pred ecCCCEEEEEecCCeEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe---CCC---
Q 041916 27 LRNHFLLASINKFGQLRYQDVTM---------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK---PTT--- 91 (359)
Q Consensus 27 s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd---~~~--- 91 (359)
-|+..++++.+.+|.|+--.+.+ |.....++. ...+..+........|+..+..|.++-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999999876532 222333443 33444444444456677777888876654 322
Q ss_pred ---CcceE---EEeccCCCeEEEE-EcC--CCCEEEEEeCCCeEEEEEcCCcee-------eEec--cCCceeEE-EcCC
Q 041916 92 ---AAPLI---KMLCHQGPVSALA-FHP--NGHLMATSGKECKIKIWDLRKYEV-------LQTL--PGHAKTLD-FSQK 152 (359)
Q Consensus 92 ---~~~~~---~~~~h~~~v~~i~-~~~--~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~--~~~i~~~~-~s~~ 152 (359)
|.++. .+.. ...|.++. +.. ++.+|+.++..|.++...+..... ...+ ...+..+. .+.+
T Consensus 83 ~a~G~~i~~ll~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~ 161 (370)
T 3l6v_A 83 NARGRPIINWIPLES-GERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD 161 (370)
T ss_dssp TSCCEEGGGSCCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred ccCCcCHhhccCCCC-CCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence 22221 1222 23454443 332 456899999999999988754322 1122 22333333 3333
Q ss_pred c-eEEEEcCCcEEEEc
Q 041916 153 G-LLAVGTGSFVQILG 167 (359)
Q Consensus 153 g-l~~~~~d~~i~i~d 167 (359)
. ++..+..|.+..|+
T Consensus 162 ~~i~l~T~~G~~irf~ 177 (370)
T 3l6v_A 162 RDVLLFASNGKTVRFG 177 (370)
T ss_dssp CEEEEEETTSEEEEEE
T ss_pred ceEEEEeCCCeEEEEE
Confidence 3 77788888877776
No 366
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=58.55 E-value=92 Score=27.06 Aligned_cols=173 Identities=10% Similarity=-0.067 Sum_probs=85.2
Q ss_pred CEEEEEecCCeEEEEECCC-CeEEEEE--ecCCCCeEEEEEcC--CCCEEEEEeCCC----eEEEEeCCCCcceEEEec-
Q 041916 31 FLLASINKFGQLRYQDVTM-GEIVGNF--RTGLGRTDVMRVNP--FNGVVSLGHSGG----TVTMWKPTTAAPLIKMLC- 100 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~~-~~~~~~~--~~~~~~v~~~~~sp--~~~~l~sg~~dg----~v~lwd~~~~~~~~~~~~- 100 (359)
..|..|...| +.+++... +..-..+ ......|.+|++.| .+.+++ +...| .|...+ ..+..-..+..
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~ 99 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRP 99 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBC
T ss_pred CEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCcc
Confidence 3566677776 55555432 2222111 12345699999998 445554 44444 444332 22322221110
Q ss_pred -------------cCCCeEEEEEcC-C-CCEEEEEeCCCeEEEEEcC--CceeeEec-------------------cCCc
Q 041916 101 -------------HQGPVSALAFHP-N-GHLMATSGKECKIKIWDLR--KYEVLQTL-------------------PGHA 144 (359)
Q Consensus 101 -------------h~~~v~~i~~~~-~-~~~l~~~~~d~~i~iwd~~--~~~~~~~~-------------------~~~i 144 (359)
....|.+|+++| + ...|+.++..+.|...+-. +++.+... ...+
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred ccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 112477899987 2 4556666655655554321 23333211 1236
Q ss_pred eeEEEcCC--c-eEEEEcCCcEEEEcCCCCCCccceeecc-c---C-----CCCcceEEEEEeeC-CCEEEEEcCCC
Q 041916 145 KTLDFSQK--G-LLAVGTGSFVQILGDFSGSHNYSRYMGH-S---M-----VKGYQIGKVSFRPY-EDVLGIGHSMG 208 (359)
Q Consensus 145 ~~~~~s~~--g-l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---~-----~~~~~v~~~~~~p~-~~~l~~~~~dg 208 (359)
.+|.++|. + +++++.++.|...+ .+......+... . . ..+..+.+++++|. ...|.+++..|
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~--DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFEST--DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEES--STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEEC--CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 78889873 3 66666555555543 222222222110 0 0 00125889999986 35666666554
No 367
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=56.99 E-value=93 Score=26.61 Aligned_cols=137 Identities=15% Similarity=0.118 Sum_probs=81.9
Q ss_pred CCCEEEEEecCCeEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC--CC----c--
Q 041916 29 NHFLLASINKFGQLRYQDVTM-------GEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT--TA----A-- 93 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~--~~----~-- 93 (359)
+..++++++.+|.|+-..+.. |.....+... +.+..+........|+..+..|.+..+... .- .
T Consensus 108 ~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a 186 (327)
T 3uc1_A 108 DAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT 186 (327)
T ss_dssp SSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS
T ss_pred CCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC
Confidence 467899999999999988754 2222233333 334444444445677778889998888765 21 1
Q ss_pred ---ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCcee-------eEec-----cCCceeEE-EcCCc-eEE
Q 041916 94 ---PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYEV-------LQTL-----PGHAKTLD-FSQKG-LLA 156 (359)
Q Consensus 94 ---~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~-----~~~i~~~~-~s~~g-l~~ 156 (359)
....+. ....|.++...+++.+++.++..|.++.-.+..... +..+ .+.+..+. ..++. ++.
T Consensus 187 ~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l 265 (327)
T 3uc1_A 187 SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYA 265 (327)
T ss_dssp BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEE
T ss_pred CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEE
Confidence 111122 234566666666677899999999999887644322 2222 12333332 23333 777
Q ss_pred EEcCCcEEEEc
Q 041916 157 VGTGSFVQILG 167 (359)
Q Consensus 157 ~~~d~~i~i~d 167 (359)
.+.+|.+.-++
T Consensus 266 ~T~~G~~ir~~ 276 (327)
T 3uc1_A 266 VTSGGGVIRTA 276 (327)
T ss_dssp EEGGGCEEEEE
T ss_pred EcCCCeEEEEe
Confidence 77777766665
No 368
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=55.03 E-value=1.1e+02 Score=26.66 Aligned_cols=104 Identities=8% Similarity=-0.036 Sum_probs=52.3
Q ss_pred CeEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCcceEEEec-------------------cCCCeEEEEEcC-CCCEEEE
Q 041916 62 RTDVMRVNPF--NGVVSLGHSGGTVTMWKPTTAAPLIKMLC-------------------HQGPVSALAFHP-NGHLMAT 119 (359)
Q Consensus 62 ~v~~~~~sp~--~~~l~sg~~dg~v~lwd~~~~~~~~~~~~-------------------h~~~v~~i~~~~-~~~~l~~ 119 (359)
.|.++++.|. ...|.++...+.|...+ ..+..-..+.. ....+.+|.++| +...|+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 4778899872 44555555556555443 22222222211 123578999998 3444555
Q ss_pred EeCCCeEEEEEcC--CceeeEe-c-----c-------CCceeEEEcCC--c-eEEEEcCCcEEEEc
Q 041916 120 SGKECKIKIWDLR--KYEVLQT-L-----P-------GHAKTLDFSQK--G-LLAVGTGSFVQILG 167 (359)
Q Consensus 120 ~~~d~~i~iwd~~--~~~~~~~-~-----~-------~~i~~~~~s~~--g-l~~~~~d~~i~i~d 167 (359)
++.++.|...+-. +++.+.. . + ..+.+|.++|. + +++++ .+.|...+
T Consensus 195 g~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~-~~gl~~s~ 259 (394)
T 3b7f_A 195 GMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN-HCGIYRMD 259 (394)
T ss_dssp EEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE-TTEEEEEE
T ss_pred EECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc-CCeEEEeC
Confidence 5444444443211 2222211 0 1 23788999986 4 55555 44455544
No 369
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.91 E-value=20 Score=34.54 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=27.1
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeEEEEEec
Q 041916 28 RNHFLLASINKFGQLRYQDVTMGEIVGNFRT 58 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 58 (359)
.+..+|++-+.|.++++||+.+++++.+..-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3577999999999999999999998887664
No 370
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Probab=50.37 E-value=1.6e+02 Score=27.43 Aligned_cols=55 Identities=18% Similarity=0.115 Sum_probs=37.1
Q ss_pred eEEEeCCCcEEEEeccCCC---e-EEEEEecCCCEEEEEec--------------CCeEEEEECCCCeEEEEEe
Q 041916 2 PYIYNRDGTELHCLKEHGA---V-LKLQFLRNHFLLASINK--------------FGQLRYQDVTMGEIVGNFR 57 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~h~~---~-~~l~~s~~~~~l~s~~~--------------dg~i~iwd~~~~~~~~~~~ 57 (359)
++.+|..|+++..+....+ . ..+...|+|+.|+.+.. +..|...| .+|+.+..+.
T Consensus 228 i~elD~~Gkvv~~~~lp~g~~~~HHD~~~l~nGn~Lv~v~~~d~~~~dG~~~~~vdD~I~EVD-~tGeVv~eW~ 300 (571)
T 3elq_A 228 WYEFDMMGQVLEDHKLPRGFADATHESIETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVD-KSGRVVDVWD 300 (571)
T ss_dssp EEEECTTCCEEEEEECCTTEECBCSCEEECTTSCEEEEEEETTEECTTSCEECCCSCEEEEEC-TTSCEEEEEE
T ss_pred EEEECCCCcEEEEEECCCCccccccceEEcCCCcEEEEEecccccCCCCcccceeccEEEEEC-CCCCEEEEEE
Confidence 4667888888877665432 2 56777899998876532 33566777 7787776654
No 371
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=48.31 E-value=1.7e+02 Score=27.22 Aligned_cols=137 Identities=14% Similarity=0.145 Sum_probs=0.0
Q ss_pred CeEEEe-CCCcEEEEeccCCCeEEEEEecCCC----------------EEEEEecCCe---------------EEEEECC
Q 041916 1 YPYIYN-RDGTELHCLKEHGAVLKLQFLRNHF----------------LLASINKFGQ---------------LRYQDVT 48 (359)
Q Consensus 1 ~v~iwd-~~g~~~~~l~~h~~~~~l~~s~~~~----------------~l~s~~~dg~---------------i~iwd~~ 48 (359)
||.|+| .+|+.+.+ +.+.|... +++++..||. |..||..
T Consensus 230 yL~vfdG~TG~~l~~---------~~~~p~rg~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~ 300 (591)
T 2zux_A 230 YLTVFQGSTGKELVT---------ANFEPARGNVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFR 300 (591)
T ss_dssp EEEEEETTTCCEEEE---------EECSSCCCCGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEE
T ss_pred EEEEEeCCCCCEEec---------ccCCCCCCcccccccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECC
Q ss_pred CCeEEEEEecCC-------------CCeEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCcceEEEe-ccCCCeEEEEEcCC
Q 041916 49 MGEIVGNFRTGL-------------GRTDVMRVNPFN-GVVSLGHSGGTVTMWKPTTAAPLIKML-CHQGPVSALAFHPN 113 (359)
Q Consensus 49 ~~~~~~~~~~~~-------------~~v~~~~~sp~~-~~l~sg~~dg~v~lwd~~~~~~~~~~~-~h~~~v~~i~~~~~ 113 (359)
.+++...+..+. ..+....+.-|| .-|+.|+. ++| ..|+.+.... +|-+.+....|.|+
T Consensus 301 ~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~ 374 (591)
T 2zux_A 301 DGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPG 374 (591)
T ss_dssp TTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTT
T ss_pred CCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCC
Q ss_pred --CCEEEEEeCC----CeEEEEEcCCceeeEec-----cCCceeEEEcCC
Q 041916 114 --GHLMATSGKE----CKIKIWDLRKYEVLQTL-----PGHAKTLDFSQK 152 (359)
Q Consensus 114 --~~~l~~~~~d----~~i~iwd~~~~~~~~~~-----~~~i~~~~~s~~ 152 (359)
|-.++.+..+ .-..+.|.++++.+... .+......|.|+
T Consensus 375 r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~ 424 (591)
T 2zux_A 375 RPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPR 424 (591)
T ss_dssp SSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTT
T ss_pred CCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCC
No 372
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=48.02 E-value=68 Score=22.37 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=11.8
Q ss_pred eeEEEcCCc-eEEEEcCCcEEEEc
Q 041916 145 KTLDFSQKG-LLAVGTGSFVQILG 167 (359)
Q Consensus 145 ~~~~~s~~g-l~~~~~d~~i~i~d 167 (359)
..+.+..+| ++....++.+ +|.
T Consensus 59 ~~l~l~~dGNLVl~d~~~~~-iW~ 81 (113)
T 3mez_B 59 CFMRLGHSGELDITDDRLNT-VFV 81 (113)
T ss_dssp CEEEECTTSCEEEECTTSCE-EEE
T ss_pred EEEEEeCCCcEEEECCCCCE-EEE
Confidence 456666677 5444444443 665
No 373
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=45.36 E-value=1.4e+02 Score=25.23 Aligned_cols=185 Identities=11% Similarity=0.111 Sum_probs=96.2
Q ss_pred ecCCCEEEEEecCCeEEEEECCCCeE-------E--EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCC---C---
Q 041916 27 LRNHFLLASINKFGQLRYQDVTMGEI-------V--GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPT---T--- 91 (359)
Q Consensus 27 s~~~~~l~s~~~dg~i~iwd~~~~~~-------~--~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~---~--- 91 (359)
-|+..++++.+.+|.|+-..+..-.. + ..+... ..+..+........++..+..|.++-+... .
T Consensus 5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r 83 (312)
T 1suu_A 5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR 83 (312)
T ss_dssp ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence 35667788899999999887653211 1 112222 233333333344567777888887766542 1
Q ss_pred ---Ccc---eEEEeccCCCeEEEEEcC---CCCEEEEEeCCCeEEEEEcCCce-------eeEec--cCCceeEEE-cCC
Q 041916 92 ---AAP---LIKMLCHQGPVSALAFHP---NGHLMATSGKECKIKIWDLRKYE-------VLQTL--PGHAKTLDF-SQK 152 (359)
Q Consensus 92 ---~~~---~~~~~~h~~~v~~i~~~~---~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~--~~~i~~~~~-s~~ 152 (359)
|.+ ...+.. ...|.++...+ +..+++..+..|.++...+.... ....+ .+.+..+.. .++
T Consensus 84 ~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~ 162 (312)
T 1suu_A 84 ASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD 162 (312)
T ss_dssp ----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred cCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence 111 111222 23344443322 46788889999999998875432 22223 233444333 444
Q ss_pred c-eEEEEcCCcEEEEcCCCC---CCccceeecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 153 G-LLAVGTGSFVQILGDFSG---SHNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 153 g-l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
. ++.++.+|.+..+....- ...-.-...-....+..|.++...+++..+++.+..|....+
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~ 227 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRL 227 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEE
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEE
Confidence 4 888888998888874321 000000000001122356665555555666677777765544
No 374
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=43.72 E-value=1.5e+02 Score=25.02 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=91.0
Q ss_pred cCCCEEEEEecCCeEEEEECCCCeEE---------EEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEe---CCC----
Q 041916 28 RNHFLLASINKFGQLRYQDVTMGEIV---------GNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWK---PTT---- 91 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~~~~~~---------~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd---~~~---- 91 (359)
|+...+++.+.+|.|+--.+.+-... ..++.+ ..+..+........|+..+..|.++-+. +..
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~ 79 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG 79 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence 35567888899999987776542211 112222 2333333333345666677788866654 322
Q ss_pred --CcceE---EEeccCCCeEEEEE-c--CCCCEEEEEeCCCeEEEEEcCCcee-------eEec--cCCceeEE-EcCCc
Q 041916 92 --AAPLI---KMLCHQGPVSALAF-H--PNGHLMATSGKECKIKIWDLRKYEV-------LQTL--PGHAKTLD-FSQKG 153 (359)
Q Consensus 92 --~~~~~---~~~~h~~~v~~i~~-~--~~~~~l~~~~~d~~i~iwd~~~~~~-------~~~~--~~~i~~~~-~s~~g 153 (359)
|.++. .+. ....|.++.. . +++.+++.++.+|.++...+..... ...+ .+.+..+. .+.+.
T Consensus 80 a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 80 ARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGED 158 (307)
T ss_dssp SCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTC
T ss_pred CCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCC
Confidence 22211 122 2234555533 2 3566889999999999987753221 1112 22333333 33444
Q ss_pred -eEEEEcCCcEEEEcCCCCCCccce----eecccCCCCcceEEEEEeeCCCEEEEEcCCCeEEEE
Q 041916 154 -LLAVGTGSFVQILGDFSGSHNYSR----YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSIL 213 (359)
Q Consensus 154 -l~~~~~d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~l~~~~~dg~~~i~ 213 (359)
++..+.+|.+..++...- ..... ...-....+..|.++...+++..+++.+..|.....
T Consensus 159 ~i~l~T~~G~~irf~~~~v-~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~ 222 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSV-RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRT 222 (307)
T ss_dssp EEEEEETTSEEEEEEGGGS-CBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEE
T ss_pred EEEEECCCCcEEEEEHHHc-CccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEE
Confidence 888888888877764221 00000 000001123356665544445566666666654443
No 375
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=41.46 E-value=87 Score=21.78 Aligned_cols=60 Identities=13% Similarity=-0.012 Sum_probs=27.4
Q ss_pred CCEEEEEecCCeEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 041916 30 HFLLASINKFGQLRYQDVTMGEIVGNFRTGL-GRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 30 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~ 91 (359)
+.+.+.-..||.+.+|+...+..+..-.... +....+.+..+|++++... ++.+ +|...+
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~-~~~~-iW~S~t 84 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD-RLNT-VFVSNT 84 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT-TSCE-EEECSC
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC-CCCE-EEECCC
Confidence 3344444455555555542233333322211 1223466667777665532 3433 676443
No 376
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.14 E-value=1.7e+02 Score=24.83 Aligned_cols=186 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred cCCCEEEEEecCCeEEEEECC---CCeEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeC---------CCCc--
Q 041916 28 RNHFLLASINKFGQLRYQDVT---MGEIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKP---------TTAA-- 93 (359)
Q Consensus 28 ~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~---------~~~~-- 93 (359)
|+...+++.+.+|.|+--.+. .......-......+..+........|+..+..|.++-+.. ..|.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i 82 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHI 82 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEG
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcCh
Q ss_pred -ceEEEeccCCCeEEEEEcC--CCCEEEEEeCCCeEEEEEc--------CCceeeEec--cCCceeEEEcCCc--eEEEE
Q 041916 94 -PLIKMLCHQGPVSALAFHP--NGHLMATSGKECKIKIWDL--------RKYEVLQTL--PGHAKTLDFSQKG--LLAVG 158 (359)
Q Consensus 94 -~~~~~~~h~~~v~~i~~~~--~~~~l~~~~~d~~i~iwd~--------~~~~~~~~~--~~~i~~~~~s~~g--l~~~~ 158 (359)
....+.....-+..+.+.+ ++.+++.++.+|.++...+ ..+.....+ .+.+..+...... ++..+
T Consensus 83 ~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T 162 (323)
T 1wp5_A 83 ANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLVT 162 (323)
T ss_dssp GGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEEE
T ss_pred hhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEEe
Q ss_pred cCCcEEEEc---CCCCCCccceeecccCCCCcceEEEEEeeCCC-EEEEEcCCCeEEEE
Q 041916 159 TGSFVQILG---DFSGSHNYSRYMGHSMVKGYQIGKVSFRPYED-VLGIGHSMGWSSIL 213 (359)
Q Consensus 159 ~d~~i~i~d---~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~l~~~~~dg~~~i~ 213 (359)
.+|.+..+. +...+..-.-...-....+..|.++...+++. .|++.+..|.....
T Consensus 163 ~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~ 221 (323)
T 1wp5_A 163 HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKM 221 (323)
T ss_dssp TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEE
T ss_pred CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEE
No 377
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=38.17 E-value=1.7e+02 Score=24.17 Aligned_cols=137 Identities=11% Similarity=-0.011 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCeEEEEECCCC------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------Cc
Q 041916 29 NHFLLASINKFGQLRYQDVTMG------EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT---------AA 93 (359)
Q Consensus 29 ~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~---------~~ 93 (359)
+..+++..+.+|.|+-..+..- .....+... +.+..+........++..+..|.+..+.... |.
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lkeg-D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv 157 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLTEG-DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGV 157 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCCTT-CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCE
T ss_pred CCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecCCC-CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCE
Confidence 4578888999999999987542 222223322 3444444444556788888999988886432 11
Q ss_pred ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCCce-------eeEec--cCCceeEE-EcCCc-eEEEEcCCc
Q 041916 94 PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRKYE-------VLQTL--PGHAKTLD-FSQKG-LLAVGTGSF 162 (359)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~--~~~i~~~~-~s~~g-l~~~~~d~~ 162 (359)
....+.. ...|.++...+++..++..+..|.++...+.... -+..+ .+.+..+. ..++. ++..+.+|.
T Consensus 158 ~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~ 236 (276)
T 3no0_A 158 QGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGK 236 (276)
T ss_dssp ECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSC
T ss_pred EEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCe
Confidence 1112222 3456665555566788899999999988875422 22222 23333332 23333 666777777
Q ss_pred EEE--Ec
Q 041916 163 VQI--LG 167 (359)
Q Consensus 163 i~i--~d 167 (359)
+.. ++
T Consensus 237 ~ir~~~~ 243 (276)
T 3no0_A 237 AFYDKIN 243 (276)
T ss_dssp EEEEEEE
T ss_pred EEEeeeC
Confidence 666 65
No 378
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=36.73 E-value=1e+02 Score=21.24 Aligned_cols=44 Identities=9% Similarity=0.253 Sum_probs=20.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCCCcceEEEeccCCCeEEEEEcCCCCEEE
Q 041916 65 VMRVNPFNGVVSLGHSGGTVTMWKPTTAAPLIKMLCHQGPVSALAFHPNGHLMA 118 (359)
Q Consensus 65 ~~~~sp~~~~l~sg~~dg~v~lwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~ 118 (359)
.+.+..+|++++... ++. .+|.-.+. .......+.+.++|++++
T Consensus 54 ~l~l~~dGNLVl~~~-~~~-~~W~S~t~--------~~~g~~~l~l~~dGnlvl 97 (110)
T 3a0c_A 54 RLTLHNNGNLVIYDQ-SNR-VIWQTKTN--------GKEDHYVLVLQQDRNVVI 97 (110)
T ss_dssp EEEECTTSCEEEECT-TCC-EEEECCCC--------CSSSCCEEEECTTSCEEE
T ss_pred EEEEeCCCCEEEECC-CCc-EEEecCCC--------CCCCCEEEEEeCCccEEE
Confidence 355556666555432 333 35653321 111123455666666544
No 379
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=34.54 E-value=54 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=17.4
Q ss_pred eEEEeCCCcEEEEecc--C-CCeEEEEEec
Q 041916 2 PYIYNRDGTELHCLKE--H-GAVLKLQFLR 28 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~--h-~~~~~l~~s~ 28 (359)
|.|+|..|+.++++.. . .+...+.|..
T Consensus 43 v~I~d~~G~~V~t~~~~~~~aG~~~~~WDg 72 (138)
T 3c12_A 43 FEITDANGTFVKQLSVPASAAGEVSFAWDG 72 (138)
T ss_dssp EEEECSSCCEEEEEEEEESSSEEEEEEECS
T ss_pred EEEEeCCCCEEEEEEcCCcCCceEEEEECC
Confidence 5678888888877762 2 2236777754
No 380
>2lta_A De novo designed protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.71 E-value=8.9 Score=24.78 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=17.8
Q ss_pred CcCCcccccccccccCCCcCcccCCC
Q 041916 333 NTNIPQALLDFTCMHAIRPLENHHHL 358 (359)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~~~~~~~ 358 (359)
+.+....|..+.+++ -||.|||-
T Consensus 87 edqakqiledlkkkg---slehhhhh 109 (110)
T 2lta_A 87 EDQAKQILEDLKKKG---SLEHHHHH 109 (110)
Confidence 667778899999887 57777773
No 381
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=31.60 E-value=15 Score=21.96 Aligned_cols=11 Identities=45% Similarity=0.812 Sum_probs=2.8
Q ss_pred CCCcCcccCCC
Q 041916 348 AIRPLENHHHL 358 (359)
Q Consensus 348 ~~~~~~~~~~~ 358 (359)
..++||.|||-
T Consensus 43 ~~~~~~~~~~~ 53 (54)
T 2l8s_A 43 KMEKLEHHHHH 53 (54)
T ss_dssp CCCC-------
T ss_pred hhhHHhhhccC
Confidence 37889988873
No 382
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=29.16 E-value=2.9e+02 Score=24.14 Aligned_cols=140 Identities=8% Similarity=-0.043 Sum_probs=0.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCC-----------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEeC
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMG-----------------------EIVGNFRTGLGRTDVMRVNPFNGVVSLGHS 80 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~ 80 (359)
+.++.-..+.+.-..+|.|+.|-.... .+..........|..++.. ....++.-..
T Consensus 182 ~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g-~~~~~~~~~~ 260 (423)
T 3mvd_K 182 CSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT-NYCTFMRESQ 260 (423)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE-TTEEEEEETT
T ss_pred EEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC-CcEEEEEECC
Q ss_pred CCeEEEE-----------eCCCCcceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEE---------------cCCc
Q 041916 81 GGTVTMW-----------KPTTAAPLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWD---------------LRKY 134 (359)
Q Consensus 81 dg~v~lw-----------d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd---------------~~~~ 134 (359)
+|.|..| +................|..|+. ...+.+....||.|+.|- ....
T Consensus 261 ~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p 338 (423)
T 3mvd_K 261 TQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKP 338 (423)
T ss_dssp TCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEE
T ss_pred CCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCc
Q ss_pred eeeEeccCCceeEEEcCCceEEEEcCCcEEEE
Q 041916 135 EVLQTLPGHAKTLDFSQKGLLAVGTGSFVQIL 166 (359)
Q Consensus 135 ~~~~~~~~~i~~~~~s~~gl~~~~~d~~i~i~ 166 (359)
..+..+...|..|+......++...+|.|+.|
T Consensus 339 ~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 339 TIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSW 370 (423)
T ss_dssp EECTTCCSCEEEEEEETTEEEEEETTSCEEEE
T ss_pred eEeccCCCCEEEEEcCCCeEEEEcCCCCEEEE
No 383
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1
Probab=27.32 E-value=1.6e+02 Score=20.60 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=6.7
Q ss_pred EEEEEcCCCCEEE
Q 041916 106 SALAFHPNGHLMA 118 (359)
Q Consensus 106 ~~i~~~~~~~~l~ 118 (359)
..+.+.++|++++
T Consensus 95 ~~l~l~~~Gnlvl 107 (119)
T 1b2p_A 95 YVLVLQPDRNVVI 107 (119)
T ss_dssp EEEEECTTSCEEE
T ss_pred EEEEEECCCcEEE
Confidence 3455556665433
No 384
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=27.02 E-value=15 Score=16.80 Aligned_cols=7 Identities=71% Similarity=0.890 Sum_probs=4.4
Q ss_pred CCcCccc
Q 041916 349 IRPLENH 355 (359)
Q Consensus 349 ~~~~~~~ 355 (359)
-|.||||
T Consensus 10 wrglenh 16 (23)
T 3ox7_P 10 WRGLENH 16 (26)
T ss_pred cccchhh
Confidence 4666666
No 385
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=26.91 E-value=91 Score=22.71 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=16.6
Q ss_pred eEEEeCCCcEEEEecc---CCCeEEEEEec
Q 041916 2 PYIYNRDGTELHCLKE---HGAVLKLQFLR 28 (359)
Q Consensus 2 v~iwd~~g~~~~~l~~---h~~~~~l~~s~ 28 (359)
|.|+|..|+.++++.- ..+...+.|..
T Consensus 41 v~I~d~~G~~V~t~~~g~~~aG~~~f~WDG 70 (138)
T 3osv_A 41 VNVYDDKGTVVNRINLGQQAAGSVSFMWDG 70 (138)
T ss_dssp EEEECTTSCEEEEEEEEEECSEEEEEEECS
T ss_pred EEEEcCCCCEEEEEEcCCcCCceEEEEECC
Confidence 5677777887777642 12236677754
No 386
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=26.63 E-value=2.7e+02 Score=22.92 Aligned_cols=155 Identities=14% Similarity=0.092 Sum_probs=85.8
Q ss_pred EEEeccCC----CeEEEEEecCCCEEEEEecCCeEEEEEC---CCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEeCCCe
Q 041916 12 LHCLKEHG----AVLKLQFLRNHFLLASINKFGQLRYQDV---TMGEIVGNFRTGLGRTDVMRVNP-FNGVVSLGHSGGT 83 (359)
Q Consensus 12 ~~~l~~h~----~~~~l~~s~~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~sg~~dg~ 83 (359)
++..++|. .+..+.......+|+..++.|.++.-.+ ..+.....+. ....|..+.... +..+++..+.+|.
T Consensus 13 ir~~~g~~~~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~ 91 (276)
T 3no0_A 13 IIPVEELPLEKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGY 91 (276)
T ss_dssp EEEGGGCCSSCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSE
T ss_pred eeeccCCCCCCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCE
Confidence 44556663 2344433444555666667887765443 2221111132 334555554322 4678999999999
Q ss_pred EEEEeCCCCc------ceEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------ceeeEec--cCCcee
Q 041916 84 VTMWKPTTAA------PLIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK---------YEVLQTL--PGHAKT 146 (359)
Q Consensus 84 v~lwd~~~~~------~~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~---------~~~~~~~--~~~i~~ 146 (359)
++-..+..-. ....+.. .+.+..+........++..+..|.+..++... |.....+ ...+..
T Consensus 92 iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~ 170 (276)
T 3no0_A 92 VKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSG 170 (276)
T ss_dssp EEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEE
T ss_pred EEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEE
Confidence 9998765431 1111222 34555555555566788888999988887633 1121122 223444
Q ss_pred EE-EcCCc-eEEEEcCCcEEEEcC
Q 041916 147 LD-FSQKG-LLAVGTGSFVQILGD 168 (359)
Q Consensus 147 ~~-~s~~g-l~~~~~d~~i~i~d~ 168 (359)
+. ..++. ++.++..|.++...+
T Consensus 171 ~~~~~~~~~ll~~T~~G~~kr~~~ 194 (276)
T 3no0_A 171 LRIWNGEPYLLVITAKGRVKKISH 194 (276)
T ss_dssp EEEESSCSEEEEEETTSCEEEEEG
T ss_pred EEEeCCCCEEEEEeCCCcEEEeEH
Confidence 43 34444 778888888877764
No 387
>2lq3_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI:biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=26.35 E-value=19 Score=25.82 Aligned_cols=15 Identities=47% Similarity=0.645 Sum_probs=12.5
Q ss_pred ccccCCCcCcccCCC
Q 041916 344 TCMHAIRPLENHHHL 358 (359)
Q Consensus 344 ~~~~~~~~~~~~~~~ 358 (359)
.|++|+++||.|||-
T Consensus 115 Lk~~a~~~~~~~~~~ 129 (130)
T 2lq3_A 115 LQAHALPVLEHHHHH 129 (130)
T ss_dssp HHHTBCCCCCCCCTT
T ss_pred HHHHHHHHHHhhccC
Confidence 467899999999884
No 388
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=26.21 E-value=2.2e+02 Score=25.93 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=34.3
Q ss_pred EEEEEeCCCeEEEEeCC-CC-------cceEEEec--cCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 74 VVSLGHSGGTVTMWKPT-TA-------APLIKMLC--HQGPVSALAFHPNGHLMATSGKECKIKI 128 (359)
Q Consensus 74 ~l~sg~~dg~v~lwd~~-~~-------~~~~~~~~--h~~~v~~i~~~~~~~~l~~~~~d~~i~i 128 (359)
.++.|..+|.|.=.-+. .+ ..+..+.. ...+|..+.++++..+|++++.++.+++
T Consensus 423 V~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 423 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 56678888876433222 11 12233332 3467888999998889988888775554
No 389
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=24.28 E-value=51 Score=15.93 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.3
Q ss_pred EEEeCCCcEEEEe
Q 041916 3 YIYNRDGTELHCL 15 (359)
Q Consensus 3 ~iwd~~g~~~~~l 15 (359)
.|||.+|..+..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 5888888887776
No 390
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.52 E-value=1.7e+02 Score=27.05 Aligned_cols=8 Identities=25% Similarity=0.401 Sum_probs=4.6
Q ss_pred eEEEcCCc
Q 041916 146 TLDFSQKG 153 (359)
Q Consensus 146 ~~~~s~~g 153 (359)
.|.+++++
T Consensus 455 ~l~~~~~~ 462 (539)
T 3al9_A 455 DMAFSINQ 462 (539)
T ss_dssp CCEECTTS
T ss_pred ceEEccCC
Confidence 55566655
No 391
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=23.46 E-value=1.3e+02 Score=27.86 Aligned_cols=69 Identities=10% Similarity=0.016 Sum_probs=40.1
Q ss_pred ceeEEEcCCc----eEEEEcCCcEEEEcCCCCCC---ccceeecccCCCCcceE-EEEEeeCCCEEEEEcCCCeEEEEE
Q 041916 144 AKTLDFSQKG----LLAVGTGSFVQILGDFSGSH---NYSRYMGHSMVKGYQIG-KVSFRPYEDVLGIGHSMGWSSILV 214 (359)
Q Consensus 144 i~~~~~s~~g----l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~~~~~dg~~~i~~ 214 (359)
.++|+....+ ++.++.+|.|.=..+..... .+..+.-.. .+.+|. .+.+++++.+|.+++..+..++=+
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~--~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvpl 478 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFK--DGSPILRDMAFSINQLYLYVMSERQVTRVPV 478 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCT--TCCCCCSCCEECTTSSEEEEECSSEEEEEES
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeec--CCCccccceEEccCCCeEEEEeccccceeeh
Confidence 3445544433 56667778665443322211 122111111 244785 899999999999999998777743
No 392
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A*
Probab=22.89 E-value=1.9e+02 Score=19.83 Aligned_cols=13 Identities=8% Similarity=-0.026 Sum_probs=8.1
Q ss_pred EEEEEeeCCCEEE
Q 041916 190 GKVSFRPYEDVLG 202 (359)
Q Consensus 190 ~~~~~~p~~~~l~ 202 (359)
..+.+.++|.+++
T Consensus 85 ~~l~l~~dGnlvl 97 (110)
T 3a0c_A 85 YVLVLQQDRNVVI 97 (110)
T ss_dssp CEEEECTTSCEEE
T ss_pred EEEEEeCCccEEE
Confidence 3566677777544
No 393
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=22.87 E-value=2.7e+02 Score=26.56 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=35.4
Q ss_pred CEEEEEeCCCeEE-EEeCCCCc-------ceEEEe--ccCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 73 GVVSLGHSGGTVT-MWKPTTAA-------PLIKML--CHQGPVSALAFHPNGHLMATSGKECKIKI 128 (359)
Q Consensus 73 ~~l~sg~~dg~v~-lwd~~~~~-------~~~~~~--~h~~~v~~i~~~~~~~~l~~~~~d~~i~i 128 (359)
..++.|..+|.|. +.-..... .+..+. ....+|..+.++++..+|++++.++.+++
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 3577788899875 22221111 122222 34567899999999999999998775554
No 394
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=22.04 E-value=5.5e+02 Score=24.88 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=69.6
Q ss_pred CeEEEEEecC-CCEEEEEecCCeEEEEECCCCeEEEEEecC-------CCCeEEEEEcCCC-CEEEEEeCC------CeE
Q 041916 20 AVLKLQFLRN-HFLLASINKFGQLRYQDVTMGEIVGNFRTG-------LGRTDVMRVNPFN-GVVSLGHSG------GTV 84 (359)
Q Consensus 20 ~~~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~sp~~-~~l~sg~~d------g~v 84 (359)
.+.+|+++|. ...++.++..+.|...+ +.|+.-..+..+ ...+.+|+++|.. ..++++... +.|
T Consensus 16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v 94 (789)
T 1sqj_A 16 YITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF 94 (789)
T ss_dssp CEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred cEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence 4589999985 35566666666665554 334433333332 2368999999853 344444322 333
Q ss_pred EEEeCCCCcceEEEec-------cC--CCeEEEEEcCC-CCEEEEEeCCCeEEE-EEc-CCceeeEecc------CCcee
Q 041916 85 TMWKPTTAAPLIKMLC-------HQ--GPVSALAFHPN-GHLMATSGKECKIKI-WDL-RKYEVLQTLP------GHAKT 146 (359)
Q Consensus 85 ~lwd~~~~~~~~~~~~-------h~--~~v~~i~~~~~-~~~l~~~~~d~~i~i-wd~-~~~~~~~~~~------~~i~~ 146 (359)
. .....++.-..+.. .. ..+..++++|. ...++.+...+.|.. -|- .+++.+...+ ..+..
T Consensus 95 ~-~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~ 173 (789)
T 1sqj_A 95 Y-VSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS 173 (789)
T ss_dssp E-EESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEE
T ss_pred E-EECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEE
Confidence 2 22333332222111 01 13567888884 445666653433321 111 1233333221 24678
Q ss_pred EEEcCCc---eEEEEcC
Q 041916 147 LDFSQKG---LLAVGTG 160 (359)
Q Consensus 147 ~~~s~~g---l~~~~~d 160 (359)
+.++|.. ++++..+
T Consensus 174 i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 174 VIFDPERNGTIYASATA 190 (789)
T ss_dssp EEECTTSTTCEEEEESS
T ss_pred EEECCCCCCEEEEEEcC
Confidence 8888853 6666554
No 395
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=20.38 E-value=4.3e+02 Score=23.05 Aligned_cols=130 Identities=11% Similarity=0.034 Sum_probs=78.5
Q ss_pred eEEEe-CCC--cEEEEeccCC-----C--eEEEEEe---cC----CCEEEEEe-cCCeEEEEECCCCeEEEEEec----C
Q 041916 2 PYIYN-RDG--TELHCLKEHG-----A--VLKLQFL---RN----HFLLASIN-KFGQLRYQDVTMGEIVGNFRT----G 59 (359)
Q Consensus 2 v~iwd-~~g--~~~~~l~~h~-----~--~~~l~~s---~~----~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~----~ 59 (359)
|.+|| .++ ++++++.-.. . ...+.+. |+ +.+++.+. ..+-|.|+|+.+++.-+.+.. .
T Consensus 125 Lv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd 204 (381)
T 3q6k_A 125 IVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE 204 (381)
T ss_dssp EEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC
T ss_pred EEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc
Confidence 56889 788 8887775421 1 2777777 22 33444443 367899999998876554320 0
Q ss_pred --------------CCCeEEEEEcCC----CCEEEEEeCCCeEEEEeC-----CCC---cceEEEeccCC---CeEEEEE
Q 041916 60 --------------LGRTDVMRVNPF----NGVVSLGHSGGTVTMWKP-----TTA---APLIKMLCHQG---PVSALAF 110 (359)
Q Consensus 60 --------------~~~v~~~~~sp~----~~~l~sg~~dg~v~lwd~-----~~~---~~~~~~~~h~~---~v~~i~~ 110 (359)
...+..|+.+|+ ++.|.-..-.+. .+|.+ +.. ..+.. .+..+ .-..+++
T Consensus 205 ~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 205 RPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIALAY 282 (381)
T ss_dssp SCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEEEEE
T ss_pred cCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEE-eeecCCCCCcceEEE
Confidence 135778888987 666665554442 23332 222 12222 23332 3345677
Q ss_pred c-CCCCEEEEEeCCCeEEEEEcCC
Q 041916 111 H-PNGHLMATSGKECKIKIWDLRK 133 (359)
Q Consensus 111 ~-~~~~~l~~~~~d~~i~iwd~~~ 133 (359)
+ .+|.++++--....|..|+..+
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 5 5787777777888999999875
No 396
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=20.29 E-value=4.2e+02 Score=22.83 Aligned_cols=143 Identities=8% Similarity=-0.065 Sum_probs=0.0
Q ss_pred EEEecCCCEEEEEecCCeEEEEECCCC------------eEEEEEecCCCCeEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 041916 24 LQFLRNHFLLASINKFGQLRYQDVTMG------------EIVGNFRTGLGRTDVMRVNPFNGVVSLGHSGGTVTMWKPTT 91 (359)
Q Consensus 24 l~~s~~~~~l~s~~~dg~i~iwd~~~~------------~~~~~~~~~~~~v~~~~~sp~~~~l~sg~~dg~v~lwd~~~ 91 (359)
+.++.-..+.+....+|.|..|-.... .+...-......|..++........++-..||.|..|-.+.
T Consensus 162 ~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 162 VDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCG
T ss_pred EEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCC
Q ss_pred Ccc----------eEEEeccCCCeEEEEEcCCCCEEEEEeCCCeEEEEEcCC--------------ceeeEec-cCCcee
Q 041916 92 AAP----------LIKMLCHQGPVSALAFHPNGHLMATSGKECKIKIWDLRK--------------YEVLQTL-PGHAKT 146 (359)
Q Consensus 92 ~~~----------~~~~~~h~~~v~~i~~~~~~~~l~~~~~d~~i~iwd~~~--------------~~~~~~~-~~~i~~ 146 (359)
.-. .............+.+.....+.+....||.|+.|-... ...+..+ ...|..
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Q ss_pred EEEcCCceEEEEcCCcEEEE
Q 041916 147 LDFSQKGLLAVGTGSFVQIL 166 (359)
Q Consensus 147 ~~~s~~gl~~~~~d~~i~i~ 166 (359)
++......++...+|.|+.|
T Consensus 322 ia~G~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 322 IATGSLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEECSSEEEEEETTCCEEEE
T ss_pred EEeccCeEEEECCCCCEEEe
No 397
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.19 E-value=3.1e+02 Score=24.93 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=36.6
Q ss_pred CEEEEEecCCeEEEEECC-CCe-------EEEEEec--CCCCeEEEEEcCCCCEEEEEeCCCeEEE
Q 041916 31 FLLASINKFGQLRYQDVT-MGE-------IVGNFRT--GLGRTDVMRVNPFNGVVSLGHSGGTVTM 86 (359)
Q Consensus 31 ~~l~s~~~dg~i~iwd~~-~~~-------~~~~~~~--~~~~v~~~~~sp~~~~l~sg~~dg~v~l 86 (359)
..+..|..+|.|.=.-+. .+. .+..+.- ...+|..|.+++++.+|++++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 346678888877543332 211 2223332 3578999999999999999998886654
No 398
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.06 E-value=2.2e+02 Score=19.54 Aligned_cols=13 Identities=15% Similarity=0.120 Sum_probs=6.5
Q ss_pred EEEEcCCCCEEEE
Q 041916 65 VMRVNPFNGVVSL 77 (359)
Q Consensus 65 ~~~~sp~~~~l~s 77 (359)
.+.+..+|++++.
T Consensus 53 ~l~l~~dGNLVl~ 65 (111)
T 3mez_A 53 TLRLNNRGQLEIH 65 (111)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEcCCCcEEEE
Confidence 3455555555443
Done!