BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041920
(193 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
+ +LD+ N LSG IP +IGS+ L L L N+++G+IP E+G LR L LDL+SN L+
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 163 GIIPKEIGSL 172
G IP+ + +L
Sbjct: 691 GRIPQAMSAL 700
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161
NL ++ L NN L+G IP IG L NL L L N+ +G IP E+G R+L+ LDLN+N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 162 NGIIPKEI 169
NG IP +
Sbjct: 548 NGTIPAAM 555
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 73 DYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132
D GS++ +D+ + + G + + P L L+L +N +SGSIP ++G L L L L
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 133 DQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLR 173
N L G IP+ + +L L +DL++NNL+G IP E+G
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 724
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
L+ L L N L+G IPS + + +NL ++ L N LTG IPK IG L NL L L++N+ +
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 163 GIIPKEIGSLR 173
G IP E+G R
Sbjct: 525 GNIPAELGDCR 535
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 71 ICDYEGSIILIDLQESNIKGE-LGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKY 129
+ + S++ +DL +N G L L + LQ L L NN +G IP + + S L
Sbjct: 360 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 419
Query: 130 LGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEI 169
L L N L+GTIP +GSL L L L N L G IP+E+
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
L+ L LW N L G IP ++ + L+ L LD N+LTG IP + + NL + L++N L
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 500
Query: 163 GIIPKEIGSLR 173
G IPK IG L
Sbjct: 501 GEIPKWIGRLE 511
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
L L L N LSG+IPS +GSLS L+ L L N L G IP+E+ ++ L L L+ N+L
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 163 GIIP 166
G IP
Sbjct: 477 GEIP 480
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 80 LIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSI-PSQIGSLSN-LKYLGLDQNNL 137
++DL + GEL + +L LDL +N+ SG I P+ + N L+ L L N
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 138 TGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
TG IP + + LV L L+ N L+G IP +GSL
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 23/91 (25%)
Query: 103 LQYLDLWNNSLSGSIPSQIGS----------------------LSNLKYLGLDQNNLTGT 140
LQ+LD+ N LSG I + L +L+YL L +N TG
Sbjct: 222 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE 281
Query: 141 IPKEI-GSLRNLVGLDLNSNNLNGIIPKEIG 170
IP + G+ L GLDL+ N+ G +P G
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 93 GRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLV 152
G ++ S NL++LD+ +N+ S IP +G S L++L + N L+G + I + L
Sbjct: 189 GDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
Query: 153 GLDLNSNNLNGIIP 166
L+++SN G IP
Sbjct: 248 LLNISSNQFVGPIP 261
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 83 LQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIP--SQIGSLSNLKYLGLDQNNLTGT 140
L S+I G + F C +L LDL NSLSG + + +GS S LK+L + N L
Sbjct: 81 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 141 IPKEIG---SLRNLVGLDLNSNNLNG 163
P ++ L +L LDL++N+++G
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISG 162
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNN 136
S+ + L E+ GE+ L LDL N G++P GS S L+ L L NN
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 137 LTGTIPKE-IGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
+G +P + + +R L LDL+ N +G +P+ + +L
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 151 LVGLDLNSNNLNGIIPKEIGSLRF 174
++ LD++ N L+G IPKEIGS+ +
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPY 654
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 48/70 (68%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
+ +LD+ N LSG IP +IGS+ L L L N+++G+IP E+G LR L LDL+SN L+
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 163 GIIPKEIGSL 172
G IP+ + +L
Sbjct: 694 GRIPQAMSAL 703
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 43/68 (63%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161
NL ++ L NN L+G IP IG L NL L L N+ +G IP E+G R+L+ LDLN+N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 162 NGIIPKEI 169
NG IP +
Sbjct: 551 NGTIPAAM 558
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 73 DYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132
D GS++ +D+ + + G + + P L L+L +N +SGSIP ++G L L L L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 133 DQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLR 173
N L G IP+ + +L L +DL++NNL+G IP E+G
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFE 727
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
L+ L L N L+G IPS + + +NL ++ L N LTG IPK IG L NL L L++N+ +
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 163 GIIPKEIGSLR 173
G IP E+G R
Sbjct: 528 GNIPAELGDCR 538
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 71 ICDYEGSIILIDLQESNIKGE-LGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKY 129
+ + S++ +DL +N G L L + LQ L L NN +G IP + + S L
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 130 LGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEI 169
L L N L+GTIP +GSL L L L N L G IP+E+
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
L+ L LW N L G IP ++ + L+ L LD N+LTG IP + + NL + L++N L
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503
Query: 163 GIIPKEIGSLR 173
G IPK IG L
Sbjct: 504 GEIPKWIGRLE 514
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 103 LQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162
L L L N LSG+IPS +GSLS L+ L L N L G IP+E+ ++ L L L+ N+L
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 163 GIIP 166
G IP
Sbjct: 480 GEIP 483
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 80 LIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSI-PSQIGSLSN-LKYLGLDQNNL 137
++DL + GEL + +L LDL +N+ SG I P+ + N L+ L L N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 138 TGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
TG IP + + LV L L+ N L+G IP +GSL
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 23/91 (25%)
Query: 103 LQYLDLWNNSLSGSIPSQIGS----------------------LSNLKYLGLDQNNLTGT 140
LQ+LD+ N LSG I + L +L+YL L +N TG
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE 284
Query: 141 IPKEI-GSLRNLVGLDLNSNNLNGIIPKEIG 170
IP + G+ L GLDL+ N+ G +P G
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 93 GRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLV 152
G ++ S NL++LD+ +N+ S IP +G S L++L + N L+G + I + L
Sbjct: 192 GDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 153 GLDLNSNNLNGIIP 166
L+++SN G IP
Sbjct: 251 LLNISSNQFVGPIP 264
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 83 LQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIP--SQIGSLSNLKYLGLDQNNLTGT 140
L S+I G + F C +L LDL NSLSG + + +GS S LK+L + N L
Sbjct: 84 LSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 141 IPKEIG---SLRNLVGLDLNSNNLNG 163
P ++ L +L LDL++N+++G
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISG 165
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNN 136
S+ + L E+ GE+ L LDL N G++P GS S L+ L L NN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 137 LTGTIPKE-IGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
+G +P + + +R L LDL+ N +G +P+ + +L
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 151 LVGLDLNSNNLNGIIPKEIGSLRF 174
++ LD++ N L+G IPKEIGS+ +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPY 657
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 61 TSDHC--KWVGIICDYEGSIILI---DLQESNIKGELGRLNFSCFPNLQYLDLWN----N 111
T+D C W+G++CD + + DL N+ S NL YL+ N
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP--SSLANLPYLNFLYIGGIN 87
Query: 112 SLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGS 171
+L G IP I L+ L YL + N++G IP + ++ LV LD + N L+G +P I S
Sbjct: 88 NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 172 L 172
L
Sbjct: 148 L 148
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 83 LQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIP 142
+ +N+ G + S L LD N+LSG++P I SL NL + D N ++G IP
Sbjct: 108 ITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 143 KEIGSLRNL-VGLDLNSNNLNGIIPKEIGSL 172
GS L + ++ N L G IP +L
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 78 IILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+ +DL + ++G+ L F N Q + L NSL+ + ++G NL L L N +
Sbjct: 199 LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256
Query: 138 TGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRF 174
GT+P+ + L+ L L+++ NNL G IP+ RF
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 80 LIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG 139
L+DL ++ IK L + F+ FP+L+ L+L N +S P +L NL+ LGL N L
Sbjct: 36 LLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 140 TIPKEIGSLRNLVGLDLNSNNL 161
L NL LD++ N +
Sbjct: 95 IPLGVFTGLSNLTKLDISENKI 116
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT 140
+D+ E+ I L + F NL+ L++ +N L L++L+ L L++ NLT
Sbjct: 109 LDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Query: 141 IPKEIGSLRNLVGLDLNSNNLNGI 164
+ + L L+ L L N+N I
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAI 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161
NL+ LDL +N L+ S+P+++GS LKY N +T T+P E G+L NL L + N L
Sbjct: 271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
Score = 33.1 bits (74), Expect = 0.10, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 106 LDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGII 165
LDL N + +I + I L L L+ N+LT +P EI +L NL LDL+ N L +
Sbjct: 229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-L 285
Query: 166 PKEIGS 171
P E+GS
Sbjct: 286 PAELGS 291
Score = 32.3 bits (72), Expect = 0.16, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 6/52 (11%)
Query: 86 SNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+++ ELG SCF L+Y ++N ++ ++P + G+L NL++LG++ N L
Sbjct: 283 TSLPAELG----SCF-QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPL 328
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 50 SGWWKDRIPHNTSD--HCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLD 107
S K + H +D H K + D +I +++L + ++ L NF+ + L LD
Sbjct: 2 SSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLD 60
Query: 108 LWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI 164
+ N++S P L LK L L N L+ K NL L L SN++ I
Sbjct: 61 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSG--SIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL 148
+L R +F+ P+LQ L L +L S PS L NL L L NN+ + L
Sbjct: 449 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 508
Query: 149 RNLVGLDLNSNNL 161
L LDL NNL
Sbjct: 509 EKLEILDLQHNNL 521
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 50 SGWWKDRIPHNTSD--HCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLD 107
S K + H +D H K + D +I +++L + ++ L NF+ + L LD
Sbjct: 7 SSTTKCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLD 65
Query: 108 LWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI 164
+ N++S P L LK L L N L+ K NL L L SN++ I
Sbjct: 66 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSG--SIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL 148
+L R +F+ P+LQ L L +L S PS L NL L L NN+ + L
Sbjct: 454 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 513
Query: 149 RNLVGLDLNSNNL 161
L LDL NNL
Sbjct: 514 EKLEILDLQHNNL 526
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 54 KDRIPHNTSD--HCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNN 111
K + H +D H K + D +I +++L + ++ L NF+ + L LD+ N
Sbjct: 1 KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFN 59
Query: 112 SLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI 164
++S P L LK L L N L+ K NL L L SN++ I
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSG--SIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL 148
+L R +F+ P+LQ L L +L S PS L NL L L NN+ + L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 149 RNLVGLDLNSNNL 161
L LDL NNL
Sbjct: 504 EKLEILDLQHNNL 516
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 57 IPHNTSD--HCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS 114
+ +N +D H K I D +I +++L + ++ L NF+ + L LD NS+S
Sbjct: 4 VRYNVADCSHLKLTHIPDDLPSNITVLNLTHNQLR-RLPPTNFTRYSQLAILDAGFNSIS 62
Query: 115 GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI 164
P L LK L L N L+ + NL LDL SN+++ I
Sbjct: 63 KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 112
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQ 134
+DL +N+ ++G +FS P+L+YL L N++ P LSNL+YL L +
Sbjct: 253 LDLSYNNLH-DVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
NL LDL N+L L +L+YL L+ NN+ P+ L NL L L
Sbjct: 249 NLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSGS--IPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL 148
+L +F+ P+LQ L L +L PS L NL L L NN+ + L
Sbjct: 444 QLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGL 503
Query: 149 RNLVGLDLNSNNL 161
NL LD NNL
Sbjct: 504 ENLEILDFQHNNL 516
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.9 bits (76), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 91 ELGRLN----FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIG 146
ELGR++ F P+L L+L N L+G P+ S+++ L L +N + K
Sbjct: 40 ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFL 99
Query: 147 SLRNLVGLDLNSNNLNGIIP 166
L L L+L N ++ ++P
Sbjct: 100 GLHQLKTLNLYDNQISCVMP 119
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.1 bits (74), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT 140
+D Q SN+K F NL YLD+ + + LS+L+ L + N+
Sbjct: 425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 141 -IPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
+P LRNL LDL+ L + P SL
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 101 PNLQYLDLWNNSLSGS---IPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLN 157
P+L++LDL N LS S G++S LKYL L N + T+ L L LD
Sbjct: 371 PSLEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQ 428
Query: 158 SNNLNGI 164
+NL +
Sbjct: 429 HSNLKQM 435
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
F+ NL +LDL L P+ SLS+L+ L + NN L +L LD
Sbjct: 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549
Query: 157 NSNNLNGIIPKEI 169
+ N++ +E+
Sbjct: 550 SLNHIMTSKKQEL 562
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 180 LSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT 140
+D Q SN+K F NL YLD+ + + LS+L+ L + N+
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 141 -IPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
+P LRNL LDL+ L + P SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
F+ NL +LDL L P+ SLS+L+ L + NN L +L LD
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 157 NSNNLNGIIPKEI 169
+ N++ +E+
Sbjct: 526 SLNHIMTSKKQEL 538
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 156 LSSNKIQSI 164
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 101 PNLQYLDLWNNSLS--GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158
P+L++LDL N LS G ++LKYL L N + T+ L L LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 159 NNLNGI 164
+NL +
Sbjct: 406 SNLKQM 411
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT 140
+D Q SN+K F NL YLD+ + + LS+L+ L + N+
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165
Query: 141 -IPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
+P LRNL LDL+ L + P SL
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
F+ NL +LDL L P+ SLS+L+ L + NN L +L LD
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Query: 157 NSNNLNGIIPKEI 169
+ N++ +E+
Sbjct: 231 SLNHIMTSKKQEL 243
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT 140
+D Q SN+K F NL YLD+ + + LS+L+ L + N+
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 141 -IPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL 172
+P LRNL LDL+ L + P SL
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 156 LSSNKIQSI 164
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 101 PNLQYLDLWNNSLS--GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158
P+L++LDL N LS G ++LKYL L N + T+ L L LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405
Query: 159 NNLNGI 164
+NL +
Sbjct: 406 SNLKQM 411
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 27/68 (39%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
F NL YL L++N L L+NL L LD N L L L L L
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 157 NSNNLNGI 164
N N L +
Sbjct: 189 NDNQLKSV 196
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEI-GSLRNLVGLD 155
F NL+ L L N L L+NL YL L N L ++PK + L NL LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLD 163
Query: 156 LNSNNLNGI 164
L++N L +
Sbjct: 164 LDNNQLQSL 172
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRN 150
ELG F LQYL L +N+L L NL +L L N ++ + L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 177
Query: 151 LVGLDLNSNNLNGIIP---KEIGSL 172
L L L+ N + + P +++G L
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRL 202
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161
NL +L L N +S L +L L L QN + P L L+ L L +NNL
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 162 NGIIPKEIGSLR 173
+ + + + LR
Sbjct: 213 SALPTEALAPLR 224
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRN 150
ELG F LQYL L +N+L L NL +L L N ++ + L +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 151 LVGLDLNSNNLNGIIP---KEIGSL 172
L L L+ N + + P +++G L
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRL 203
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161
NL +L L N +S L +L L L QN + P L L+ L L +NNL
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 162 NGIIPKEIGSLR 173
+ + + + LR
Sbjct: 214 SALPTEALAPLR 225
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEI-GSLRNLVGLDLNSNN 160
N Q L L +N ++ P SL NLK L L N L G +P + SL L LDL +N
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 161 LNGIIPKEI 169
L ++P +
Sbjct: 100 LT-VLPSAV 107
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 104 QYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNG 163
Q L L++N ++ P L+ L L LD N LT L L L LN N L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 164 IIPKEIGSLR 173
I +LR
Sbjct: 93 IPRGAFDNLR 102
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 71 ICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYL 130
+CD S+ I+LQ+ +L F CF +Q LDL L+G +PS I +++LK L
Sbjct: 250 LCDM--SVESINLQKHRF-SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 131 GLDQNNL 137
L+ N+
Sbjct: 306 VLNANSF 312
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLK--YLGLDQNNLTGTIPKEIGSLRNLVGL 154
F N+ +LDL +NSL+G + +LS+LK YL + NN+ P + +L +
Sbjct: 495 FHGLRNVNHLDLSHNSLTG---DSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSII 551
Query: 155 DLNSNNLN 162
+L+ N L+
Sbjct: 552 NLSHNPLD 559
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEI-GSLRNLVGLD 155
F NL+ L L N L L+NL YL L N L ++PK + L NL LD
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 156 LNSNNLNGI 164
L+ N L +
Sbjct: 164 LSYNQLQSL 172
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQ 134
E S+ ++LQE ++ F CF LQ LDL L G +PS + L+ LK L L
Sbjct: 250 EMSVESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSV 307
Query: 135 NNL 137
N+
Sbjct: 308 NHF 310
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 27/61 (44%)
Query: 104 QYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNG 163
Q L L NN ++ P L NL+ L + N LT L L LDLN N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 164 I 164
I
Sbjct: 96 I 96
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
F +L+ L L+NN L L+ LK L LD N L SL L L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212
Query: 157 NSN----NLNGII 165
N NGII
Sbjct: 213 QENPWDCTCNGII 225
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156
F NL+ L + +N L L NL L LD+N L P+ SL L L L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140
Query: 157 NSNNLNGIIPKEI 169
N L +PK +
Sbjct: 141 GYNELQS-LPKGV 152
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 26/61 (42%)
Query: 104 QYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNG 163
Q L L++N ++ P L+ L L LD N LT L L L LN N L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 164 I 164
I
Sbjct: 101 I 101
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 26/61 (42%)
Query: 104 QYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNG 163
Q L L++N ++ P L+ L L LD N LT L L L LN N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 164 I 164
I
Sbjct: 93 I 93
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 243
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 244 LDLANNQISNLAP 256
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 71 ICDYEGSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP-------- 118
I D IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 119 ------------SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2W2J|A Chain A, Crystal Structure Of The Human Carbonic Anhydrase Related
Protein Viii
Length = 291
Score = 30.0 bits (66), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 86 SNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132
N +G +NF FP +L WN++L GSI +G + + L
Sbjct: 123 ENQRGSEHTVNFKAFPMELHLIHWNSTLFGSIDEAVGKPHGIAIIAL 169
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 242
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 243 LDLANNQISNLAP 255
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 71 ICDYEGSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP-------- 118
I D IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 206 ISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLT 263
Query: 119 ------------SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 264 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 95 LNFSCFP--NLQYLDLWNNSLSG-SIPSQIGSLSNLKYLGLDQNNLTGT 140
+ SC P NL++LDL N+ I + G++S LK+LGL +L +
Sbjct: 82 VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS 130
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 247
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 248 LDLANNQISNLAP 260
Score = 26.9 bits (58), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 71 ICDYEGSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP-------- 118
I D IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLT 268
Query: 119 ------------SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 269 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 243
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 244 LDLANNQISNLAP 256
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 71 ICDYEGSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP-------- 118
I D IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 207 ISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 119 ------------SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 242
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 243 LDLANNQISNLAP 255
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 71 ICDYEGSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP-------- 118
I D IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 206 ISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLT 263
Query: 119 ------------SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 264 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 243
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 244 LDLANNQISNLAP 256
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 28/112 (25%)
Query: 79 ILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP---------------- 118
IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 215 ILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 119 ----SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 273 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSL---RNLVG 153
+ NL+ L NN +S P +G L+NL L L+ N L K+IG+L NL
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL-----KDIGTLASLTNLTD 246
Query: 154 LDLNSNNLNGIIP 166
LDL +N ++ + P
Sbjct: 247 LDLANNQISNLAP 259
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 28/120 (23%)
Query: 71 ICDYEGSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIP-------- 118
I D IL +L E ++ G ++G L + NL LDL NN +S P
Sbjct: 210 ISDITPLGILTNLDELSLNGNQLKDIGTL--ASLTNLTDLDLANNQISNLAPLSGLTKLT 267
Query: 119 ------------SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP 166
S + L+ L L L++N L P I +L+NL L L NN++ I P
Sbjct: 268 ELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 83 LQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIP 142
LQ++N++ L F NL +L L N + L +L L L QN++ P
Sbjct: 135 LQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 143 KEIGSLRNLVGLDLNSNNLNGIIPKEI 169
L L+ L L +NNL+ ++P E+
Sbjct: 194 HAFRDLGRLMTLYLFANNLS-MLPAEV 219
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 91 ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRN 150
ELG F LQYL L +N+L + L NL +L L N + L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHS 177
Query: 151 LVGLDLNSNNLNGIIP---KEIGSL 172
L L L+ N++ + P +++G L
Sbjct: 178 LDRLLLHQNHVARVHPHAFRDLGRL 202
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132
F +L++LDL +N LS S G LS+LKYL L
Sbjct: 96 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 131
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132
F +L++LDL +N LS S G LS+LKYL L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%)
Query: 87 NIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLT 138
N+ GEL NF P + Y+DL N ++ L L+ L L N LT
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3EJ6|A Chain A, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|B Chain B, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|C Chain C, Neurospora Crassa Catalase-3 Crystal Structure
pdb|3EJ6|D Chain D, Neurospora Crassa Catalase-3 Crystal Structure
Length = 688
Score = 28.9 bits (63), Expect = 2.1, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 107 DLWNNSLSGSIPS-----QIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161
DLW+ SG+ PS Q+ + G D + T +P+E L+ L + LN N +
Sbjct: 264 DLWDAIESGNAPSWELAVQLIDEDKAQAYGFDLLDPTKFLPEEFAPLQVLGEMTLNRNPM 323
Query: 162 N 162
N
Sbjct: 324 N 324
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
F CF LQ LDL LS +PS + LS LK L L N
Sbjct: 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKF 313
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 68 VGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNL 127
+G +C + L +Q S++ L ++ P+ LDL NN ++ +L NL
Sbjct: 21 MGPVCPFRCQCHLRVVQCSDLG--LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNL 78
Query: 128 KYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI---IPKEIGSLR 173
L L N ++ P L L L L+ N L + +PK + LR
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 127
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 68 VGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNL 127
+G +C + L +Q S++ L ++ P+ LDL NN ++ +L NL
Sbjct: 21 MGPVCPFRCQCHLRVVQCSDLG--LEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNL 78
Query: 128 KYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI---IPKEIGSLR 173
L L N ++ P L L L L+ N L + +PK + LR
Sbjct: 79 HTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 127
>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By
Dinitrosoglutathione
Length = 478
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 80 LIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG 139
L+DLQ ++I EL + +F +L L L NN +S L L+ L + +N+L
Sbjct: 58 LLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV- 115
Query: 140 TIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGS 171
IP + S +LV L ++ N + +PK + S
Sbjct: 116 EIPPNLPS--SLVELRIHDNRIRK-VPKGVFS 144
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%)
Query: 101 PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNN 160
P+ LDL NN +S L +L L L N ++ K LR L L ++ N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 161 LNGIIPKEIGSL 172
L I P SL
Sbjct: 114 LVEIPPNLPSSL 125
>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
Length = 478
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By
Diglutathione-Dinitroso-Iron
Length = 478
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
>pdb|1K4Q|A Chain A, Human Glutathione Reductase Inactivated By Peroxynitrite
Length = 463
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 272 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 310
>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene
Inhibitor
Length = 461
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 270 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 308
>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione
Reductase, Complexed With Gopi
Length = 479
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 288 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 326
>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
Length = 477
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 286 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 324
>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Ajoene Inhibitor And Subversive Substrate
pdb|2GH5|A Chain A, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|2GH5|B Chain B, Crystal Structure Of Human Glutathione Reductase Complexed
With A Fluoro-analogue Of The Menadione Derivative M5
pdb|1GRA|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRB|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRE|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|1GRF|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase
As Derived From Refined Enzyme: Substrate Crystal
Structures At 2 Angstroms Resolution
pdb|3GRS|A Chain A, Refined Structure Of Glutathione Reductase At 1.54
Angstroms Resolution
pdb|4GR1|A Chain A, The Binding Of The Retro-analogue Of Glutathione Disulfide
To Glutathione Reductase
pdb|3DJJ|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK4|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK8|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|3DK9|A Chain A, Catalytic Cycle Of Human Glutathione Reductase Near 1 A
Resolution
pdb|1GRH|A Chain A, Inhibition Of Human Glutathione Reductase By The
Nitrosourea Drugs 1, 3-Bis(2-Chloroethyl)-1-Nitrosourea
And 1-(2-Chloroethyl)-3-(2- Hydroxyethyl)-1-Nitrosourea
pdb|3SQP|A Chain A, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
pdb|3SQP|B Chain B, Structure Of Human Glutathione Reductase Complexed With
Pyocyanin, An Agent With Antimalarial Activity
Length = 478
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Glutathione Complex
pdb|3GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized
Trypanothione Complex
pdb|4GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Mixed
Disulfide Between Trypanothione And The Enzyme
pdb|5GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant,
Glutathionylspermidine Complex
Length = 461
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 270 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 308
>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT
Length = 478
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 52 WWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKG 90
W R+P+ +GI D +G II+ + Q +N+KG
Sbjct: 287 WAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKG 325
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 98 FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 158 LSSNKIQSI 166
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN+L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN+L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN+L+ + L NL L L +N+L
Sbjct: 126 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
Query: 138 TGTIPK 143
TIPK
Sbjct: 186 Y-TIPK 190
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 156 LSSNKIQSI 164
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 157 LSSNKIQSI 165
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN+L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN+L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 158 LSSNKIQSI 166
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 82 DLQESNIKG-ELGRLN---FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNL 137
+LQE +KG EL L + P L+ L L NN L+ + L NL L L +N+L
Sbjct: 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
Query: 138 TGTIPK 143
TIPK
Sbjct: 185 Y-TIPK 189
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLD 155
FS +LQ L +L+ IG L LK L + N + +P+ +L NL LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 156 LNSNNLNGI 164
L+SN + I
Sbjct: 157 LSSNKIQSI 165
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 106 LDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI 164
L+L +N L+GS+ + +K L L NN +IPK++ L+ L L++ SN L +
Sbjct: 433 LNLSSNMLTGSVFRCLPP--KVKVLDL-HNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 121 IGSLSNLKYLGLDQNNL-TGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLR 173
IG L LK L + N + + +P +L NLV +DL+ N + I ++ LR
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 172
>pdb|2RA8|A Chain A, Crystal Structure Of The Q64v53_bacfr Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr43
Length = 362
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 20/96 (20%)
Query: 54 KDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSL 113
KDR P+ KW+GI+ E ++++ ES+I P L+ D+ L
Sbjct: 248 KDRFPN-----LKWLGIVDAEEQNVVVEXFLESDI-----------LPQLETXDISAGVL 291
Query: 114 SGS----IPSQIGSLSNLKYLGLDQNNLTGTIPKEI 145
+ + + + +LK++ N L+ KE+
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINXKYNYLSDEXKKEL 327
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 121 IGSLSNLKYLGLDQNNL-TGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLR 173
IG L LK L + N + + +P +L NLV +DL+ N + I ++ LR
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,082,198
Number of Sequences: 62578
Number of extensions: 202287
Number of successful extensions: 756
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 257
length of query: 193
length of database: 14,973,337
effective HSP length: 93
effective length of query: 100
effective length of database: 9,153,583
effective search space: 915358300
effective search space used: 915358300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)