Query 041920
Match_columns 193
No_of_seqs 274 out of 3374
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:05:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 8.8E-22 1.9E-26 176.4 13.4 155 35-191 29-206 (968)
2 PLN03150 hypothetical protein; 99.8 1.9E-18 4.2E-23 148.0 11.8 155 30-190 367-532 (623)
3 PLN00113 leucine-rich repeat r 99.6 4.9E-16 1.1E-20 139.6 8.1 115 76-191 475-589 (968)
4 PLN03150 hypothetical protein; 99.5 6.1E-14 1.3E-18 120.4 6.8 91 102-192 419-509 (623)
5 KOG0617 Ras suppressor protein 99.5 2.1E-15 4.5E-20 107.2 -3.2 111 75-190 32-166 (264)
6 KOG0617 Ras suppressor protein 99.3 4.4E-14 9.5E-19 100.5 -2.9 111 77-192 80-191 (264)
7 PF14580 LRR_9: Leucine-rich r 99.2 6.3E-12 1.4E-16 91.1 3.4 104 77-186 20-126 (175)
8 KOG4194 Membrane glycoprotein 99.2 1.2E-12 2.7E-17 108.1 -1.5 111 76-187 269-379 (873)
9 KOG0472 Leucine-rich repeat pr 99.2 3.1E-12 6.7E-17 101.6 -0.2 107 76-186 435-541 (565)
10 PF13855 LRR_8: Leucine rich r 99.1 5.1E-11 1.1E-15 71.6 2.9 59 126-184 2-60 (61)
11 KOG4194 Membrane glycoprotein 99.1 3.8E-11 8.3E-16 99.4 2.8 110 76-186 125-234 (873)
12 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.4E-15 70.1 3.4 60 102-161 2-61 (61)
13 KOG0444 Cytoskeletal regulator 99.1 5.4E-12 1.2E-16 105.4 -3.5 112 76-192 245-357 (1255)
14 KOG4237 Extracellular matrix p 99.1 1.2E-11 2.6E-16 98.0 -2.0 113 73-186 64-177 (498)
15 KOG0444 Cytoskeletal regulator 99.0 2.9E-11 6.3E-16 101.1 -0.2 108 76-186 126-258 (1255)
16 PF14580 LRR_9: Leucine-rich r 99.0 4.6E-10 9.9E-15 81.4 3.8 101 76-180 42-147 (175)
17 KOG0618 Serine/threonine phosp 99.0 8.2E-11 1.8E-15 101.6 -0.6 104 76-184 383-487 (1081)
18 KOG0472 Leucine-rich repeat pr 99.0 2.3E-11 5E-16 96.7 -4.0 91 91-186 197-288 (565)
19 PRK15387 E3 ubiquitin-protein 98.9 9.7E-10 2.1E-14 95.8 4.8 81 102-191 383-463 (788)
20 PRK15370 E3 ubiquitin-protein 98.9 6.8E-09 1.5E-13 90.7 8.5 102 76-191 199-300 (754)
21 KOG1259 Nischarin, modulator o 98.9 3.1E-10 6.7E-15 87.6 0.1 106 76-187 307-413 (490)
22 KOG0618 Serine/threonine phosp 98.8 1.4E-10 3E-15 100.2 -3.6 106 76-186 359-465 (1081)
23 PLN03210 Resistant to P. syrin 98.8 1.8E-08 3.9E-13 92.5 9.2 111 76-190 611-721 (1153)
24 PLN03210 Resistant to P. syrin 98.8 4.4E-08 9.6E-13 90.0 10.0 112 76-192 589-700 (1153)
25 cd00116 LRR_RI Leucine-rich re 98.7 3.6E-09 7.7E-14 83.7 2.1 108 78-186 110-234 (319)
26 KOG0532 Leucine-rich repeat (L 98.7 9.9E-10 2.2E-14 90.8 -1.1 108 77-191 144-251 (722)
27 PRK15370 E3 ubiquitin-protein 98.7 5.8E-08 1.3E-12 85.0 8.8 103 76-192 178-280 (754)
28 KOG1259 Nischarin, modulator o 98.7 2.3E-09 5.1E-14 82.8 -0.1 103 77-186 285-387 (490)
29 cd00116 LRR_RI Leucine-rich re 98.7 5.2E-09 1.1E-13 82.7 1.5 111 75-186 80-206 (319)
30 KOG4237 Extracellular matrix p 98.6 6.5E-09 1.4E-13 82.7 0.3 96 91-186 264-359 (498)
31 PRK15387 E3 ubiquitin-protein 98.6 1.3E-07 2.7E-12 82.9 7.7 78 76-163 222-316 (788)
32 KOG4579 Leucine-rich repeat (L 98.5 6.4E-09 1.4E-13 71.6 -2.1 111 76-190 53-163 (177)
33 KOG0532 Leucine-rich repeat (L 98.5 6.2E-09 1.3E-13 86.2 -2.6 109 77-193 122-230 (722)
34 PF12799 LRR_4: Leucine Rich r 98.5 1E-07 2.2E-12 53.1 2.6 36 150-186 2-37 (44)
35 COG4886 Leucine-rich repeat (L 98.5 9.2E-08 2E-12 78.2 2.6 102 77-183 117-219 (394)
36 KOG4579 Leucine-rich repeat (L 98.5 2.9E-09 6.3E-14 73.3 -5.2 111 75-190 26-139 (177)
37 KOG4658 Apoptotic ATPase [Sign 98.4 7.8E-08 1.7E-12 85.5 2.1 105 77-183 546-652 (889)
38 COG4886 Leucine-rich repeat (L 98.4 2.2E-07 4.7E-12 76.0 3.1 106 80-191 97-203 (394)
39 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.4E-11 48.9 3.5 36 102-138 2-37 (44)
40 KOG1644 U2-associated snRNP A' 98.3 1.3E-06 2.8E-11 64.0 4.6 102 77-182 43-149 (233)
41 KOG4658 Apoptotic ATPase [Sign 98.2 1.2E-06 2.6E-11 78.1 4.2 106 77-186 524-631 (889)
42 KOG1859 Leucine-rich repeat pr 98.2 4.5E-08 9.7E-13 83.5 -5.2 102 78-186 166-267 (1096)
43 KOG3207 Beta-tubulin folding c 98.2 4.2E-07 9.1E-12 73.4 0.0 87 99-186 220-314 (505)
44 KOG0531 Protein phosphatase 1, 98.2 8.2E-07 1.8E-11 73.2 1.7 104 76-186 95-199 (414)
45 PF08263 LRRNT_2: Leucine rich 98.1 1.4E-06 3E-11 48.2 1.8 39 35-73 3-43 (43)
46 KOG0531 Protein phosphatase 1, 98.1 9.9E-07 2.1E-11 72.8 0.7 103 77-186 73-175 (414)
47 KOG1644 U2-associated snRNP A' 97.9 2.3E-05 5E-10 57.6 4.9 104 79-186 22-126 (233)
48 KOG1859 Leucine-rich repeat pr 97.9 3.1E-07 6.7E-12 78.5 -5.4 104 76-186 187-292 (1096)
49 KOG2739 Leucine-rich acidic nu 97.7 2.5E-05 5.4E-10 59.3 2.5 99 77-180 44-150 (260)
50 KOG3207 Beta-tubulin folding c 97.6 9.3E-06 2E-10 65.8 -0.6 83 76-159 146-232 (505)
51 KOG2739 Leucine-rich acidic nu 97.6 3.1E-05 6.7E-10 58.8 2.1 87 97-187 39-130 (260)
52 KOG3665 ZYG-1-like serine/thre 97.4 6.5E-05 1.4E-09 65.6 1.5 109 76-187 148-264 (699)
53 PRK15386 type III secretion pr 97.4 0.0007 1.5E-08 55.5 6.9 31 150-183 157-187 (426)
54 KOG1909 Ran GTPase-activating 97.3 3.4E-05 7.4E-10 60.9 -0.8 108 77-185 186-310 (382)
55 KOG1909 Ran GTPase-activating 97.3 7.2E-05 1.6E-09 59.1 0.9 111 76-186 92-226 (382)
56 KOG2123 Uncharacterized conser 97.3 4.3E-06 9.2E-11 64.3 -5.8 98 76-179 19-123 (388)
57 PRK15386 type III secretion pr 97.3 0.0011 2.3E-08 54.4 7.3 97 76-186 52-169 (426)
58 KOG2982 Uncharacterized conser 96.8 0.00044 9.6E-09 54.0 0.8 83 77-160 72-157 (418)
59 KOG2982 Uncharacterized conser 96.7 0.00034 7.3E-09 54.6 -0.4 61 74-135 95-156 (418)
60 PF13306 LRR_5: Leucine rich r 96.7 0.0079 1.7E-07 40.9 6.3 101 76-182 12-112 (129)
61 KOG3665 ZYG-1-like serine/thre 96.6 0.0013 2.9E-08 57.6 2.8 107 77-185 123-232 (699)
62 PF00560 LRR_1: Leucine Rich R 96.6 0.00075 1.6E-08 31.4 0.5 18 174-192 1-18 (22)
63 PF00560 LRR_1: Leucine Rich R 96.4 0.001 2.3E-08 30.9 0.5 19 151-170 2-20 (22)
64 PF13306 LRR_5: Leucine rich r 96.1 0.02 4.4E-07 38.8 5.8 89 92-183 3-91 (129)
65 COG5238 RNA1 Ran GTPase-activa 95.9 0.0067 1.4E-07 47.1 2.7 110 76-186 30-170 (388)
66 KOG0473 Leucine-rich repeat pr 95.9 8.1E-05 1.8E-09 56.1 -7.5 83 76-162 42-124 (326)
67 PF13504 LRR_7: Leucine rich r 95.6 0.0059 1.3E-07 26.4 0.8 13 150-162 2-14 (17)
68 KOG2123 Uncharacterized conser 95.5 0.00091 2E-08 51.8 -3.4 86 100-190 18-105 (388)
69 COG5238 RNA1 Ran GTPase-activa 95.2 0.033 7.2E-07 43.3 4.3 110 76-186 92-227 (388)
70 KOG0473 Leucine-rich repeat pr 95.2 0.00038 8.3E-09 52.5 -6.0 93 91-186 32-124 (326)
71 KOG2120 SCF ubiquitin ligase, 95.0 0.0044 9.5E-08 48.6 -0.8 106 75-182 233-372 (419)
72 KOG2120 SCF ubiquitin ligase, 93.1 0.0033 7.2E-08 49.3 -4.9 86 102-187 186-274 (419)
73 smart00370 LRR Leucine-rich re 92.3 0.15 3.3E-06 24.3 2.2 14 149-162 2-15 (26)
74 smart00369 LRR_TYP Leucine-ric 92.3 0.15 3.3E-06 24.3 2.2 14 149-162 2-15 (26)
75 smart00364 LRR_BAC Leucine-ric 91.1 0.13 2.8E-06 24.9 1.1 17 174-191 3-19 (26)
76 PF13516 LRR_6: Leucine Rich r 88.2 0.12 2.6E-06 24.2 -0.3 13 150-162 3-15 (24)
77 KOG3864 Uncharacterized conser 87.7 0.073 1.6E-06 39.5 -1.8 82 76-158 101-185 (221)
78 KOG3864 Uncharacterized conser 86.6 0.086 1.9E-06 39.1 -1.9 81 102-182 102-185 (221)
79 smart00365 LRR_SD22 Leucine-ri 84.2 0.9 2E-05 21.9 1.6 14 149-162 2-15 (26)
80 smart00368 LRR_RI Leucine rich 79.7 1.5 3.3E-05 21.3 1.6 14 149-162 2-15 (28)
81 KOG1947 Leucine rich repeat pr 79.1 1.2 2.5E-05 37.1 1.7 60 124-183 242-305 (482)
82 KOG3763 mRNA export factor TAP 78.5 1.1 2.5E-05 38.1 1.4 65 98-164 215-285 (585)
83 KOG3763 mRNA export factor TAP 67.4 2.9 6.2E-05 35.8 1.2 64 123-188 216-285 (585)
84 KOG1947 Leucine rich repeat pr 66.6 1.6 3.5E-05 36.2 -0.4 105 76-180 214-328 (482)
85 KOG4308 LRR-containing protein 61.1 0.44 9.5E-06 40.3 -4.7 88 99-186 202-303 (478)
86 PF15144 DUF4576: Domain of un 48.7 11 0.00023 23.4 1.1 17 1-17 1-17 (88)
87 TIGR00864 PCC polycystin catio 44.9 14 0.00031 37.8 1.9 32 82-114 1-32 (2740)
88 smart00367 LRR_CC Leucine-rich 44.3 17 0.00036 17.0 1.3 12 149-160 2-13 (26)
89 TIGR00864 PCC polycystin catio 39.2 22 0.00047 36.7 2.2 32 107-138 1-32 (2740)
90 PF02950 Conotoxin: Conotoxin; 27.5 29 0.00063 21.0 0.7 7 61-67 61-67 (75)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=8.8e-22 Score=176.36 Aligned_cols=155 Identities=36% Similarity=0.567 Sum_probs=110.1
Q ss_pred ccccccHHHHHHHhcCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccC
Q 041920 35 IHVAASETERQALLNSGWWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS 114 (193)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~w~gv~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~ 114 (193)
.+..|+.++++.+.++. .....|....++|.|.|+.|+..++|+.|++++|++.+.++.. +..+++|++|++++|.++
T Consensus 29 ~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 29 EELELLLSFKSSINDPL-KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLS 106 (968)
T ss_pred HHHHHHHHHHHhCCCCc-ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccC
Confidence 45589999999986443 3456888788999999999987789999999999999887765 888999999999999888
Q ss_pred ccCchhcc-CCCCCCEEeCcCCCCCccC----------------------CcccCCCCCCCeeecccCcCCccChhhcCC
Q 041920 115 GSIPSQIG-SLSNLKYLGLDQNNLTGTI----------------------PKEIGSLRNLVGLDLNSNNLNGIIPKEIGS 171 (193)
Q Consensus 115 ~~~p~~~~-~l~~L~~L~ls~n~l~~~~----------------------p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 171 (193)
+.+|..+. .+++|++|++++|.+++.+ |..++.+++|++|++++|.+.+.+|..+.+
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 186 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh
Confidence 77776543 6677777777766665444 444445555555555555555555555555
Q ss_pred CccCceeeeeccccCccCCC
Q 041920 172 LRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 172 l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++|++++|.+++.+|.
T Consensus 187 l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 187 LTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred CcCCCeeeccCCCCcCcCCh
Confidence 55555555555555555553
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.78 E-value=1.9e-18 Score=147.96 Aligned_cols=155 Identities=28% Similarity=0.445 Sum_probs=129.1
Q ss_pred cccccccccccHHHHHHHhcCCCCCCCCCCCCCCCC-----cccceeeCCC-----CCEEEEEcCCCCcccccCCCcCCC
Q 041920 30 ATNISIHVAASETERQALLNSGWWKDRIPHNTSDHC-----KWVGIICDYE-----GSIILIDLQESNIKGELGRLNFSC 99 (193)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c-----~w~gv~c~~~-----~~l~~L~l~~n~l~~~l~~~~~~~ 99 (193)
....+.+..++...+.++.... ...|. +++| .|.|+.|... ..++.|+|++|++.|.+|.. +..
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~---~~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~-i~~ 440 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPL---RFGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND-ISK 440 (623)
T ss_pred cccCchHHHHHHHHHHhcCCcc---cCCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHH-HhC
Confidence 3445566778888887775432 12454 2344 7999999532 24899999999999999987 999
Q ss_pred CCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCC-ccCcee
Q 041920 100 FPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSL-RFLEVL 178 (193)
Q Consensus 100 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l-~~L~~L 178 (193)
+++|+.|+|++|.++|.+|..+..+++|+.|++++|.++|.+|..++.+++|++|++++|.++|.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764 467889
Q ss_pred eeeccccCccCC
Q 041920 179 ELSSNNLNGELP 190 (193)
Q Consensus 179 ~l~~N~l~g~iP 190 (193)
++.+|...+..|
T Consensus 521 ~~~~N~~lc~~p 532 (623)
T PLN03150 521 NFTDNAGLCGIP 532 (623)
T ss_pred EecCCccccCCC
Confidence 999997665555
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.64 E-value=4.9e-16 Score=139.55 Aligned_cols=115 Identities=35% Similarity=0.573 Sum_probs=104.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|++.+.+|.. +.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 553 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRK-LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553 (968)
T ss_pred ccceEEECcCCccCCccChh-hhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence 46788999999998887776 88899999999999999988999999999999999999999999999999999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++++.+|..+.++++|+++++++|+++|.+|.
T Consensus 554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 999999999999999999999999999999998885
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=6.1e-14 Score=120.42 Aligned_cols=91 Identities=38% Similarity=0.652 Sum_probs=87.4
Q ss_pred CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeee
Q 041920 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELS 181 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 181 (193)
.++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|++++|+++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCCCC
Q 041920 182 SNNLNGELPIN 192 (193)
Q Consensus 182 ~N~l~g~iP~~ 192 (193)
+|.++|.+|..
T Consensus 499 ~N~l~g~iP~~ 509 (623)
T PLN03150 499 GNSLSGRVPAA 509 (623)
T ss_pred CCcccccCChH
Confidence 99999999975
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2.1e-15 Score=107.22 Aligned_cols=111 Identities=34% Similarity=0.564 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
...++.+.++.|.++ .+|+. +..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. .+|..|+.++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 367888889999988 77776 888999999999999988 67888888999999999999887 888899999999999
Q ss_pred ecccCcCCc------------------------cChhhcCCCccCceeeeeccccCccCC
Q 041920 155 DLNSNNLNG------------------------IIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 155 ~l~~n~l~~------------------------~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
|+.+|++.. .+|..++++++|++|.+..|.+. ++|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lp 166 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLP 166 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCc
Confidence 988887753 23444555566666666666554 344
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=4.4e-14 Score=100.52 Aligned_cols=111 Identities=34% Similarity=0.552 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccC-ccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS-GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.++.+++..|++. .+|.. |+.++.|+.||+.+|++. ..+|..|-.+..|+-|.+++|.|. .+|..++++++|+.|.
T Consensus 80 klr~lnvgmnrl~-~lprg-fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~ 156 (264)
T KOG0617|consen 80 KLRILNVGMNRLN-ILPRG-FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILS 156 (264)
T ss_pred hhhheecchhhhh-cCccc-cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEe
Confidence 4555566666655 55555 667777777777776664 345666666667777777777776 7899999999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
+..|.+- .+|..++.+..|+.|++.+|.++ .+|+.
T Consensus 157 lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred eccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence 9999987 78999999999999999999998 67754
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=6.3e-12 Score=91.07 Aligned_cols=104 Identities=27% Similarity=0.421 Sum_probs=40.1
Q ss_pred CEEEEEcCCCCcccccCCCcCC-CCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCccc-CCCCCCCee
Q 041920 77 SIILIDLQESNIKGELGRLNFS-CFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEI-GSLRNLVGL 154 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L 154 (193)
+++.|++++|.|. .+.. +. .+.+|+.|++++|.++. ++ .+..++.|++|++++|+++ .+...+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccc-cccc--hhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 5688999999988 5544 54 57889999999999983 43 4778899999999999998 444434 357899999
Q ss_pred ecccCcCCccC-hhhcCCCccCceeeeeccccC
Q 041920 155 DLNSNNLNGII-PKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++++|++...- -..+..+++|++|++.+|+++
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999987421 134667899999999999886
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.20 E-value=1.2e-12 Score=108.08 Aligned_cols=111 Identities=22% Similarity=0.231 Sum_probs=68.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|+|+.|++. .+..+-+.+++.|+.|++++|.|...-++.+...++|+.|+|++|+++..-+..+..+..|++|+
T Consensus 269 ~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred cccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhc
Confidence 45677777777777 55544467777777777777777766666666677777777777777644445555555555555
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
|++|+++..-...|..+++|+.|||++|.+++
T Consensus 348 Ls~Nsi~~l~e~af~~lssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 348 LSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW 379 (873)
T ss_pred ccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence 55555553333344445555555555555443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.18 E-value=3.1e-12 Score=101.63 Aligned_cols=107 Identities=28% Similarity=0.431 Sum_probs=79.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.+++++|-+. .+|.+ ++.+..|+.++++.|.|. ..|..+..+..++.+-.++|++...-|..+.++.+|.+||
T Consensus 435 ~kLt~L~L~NN~Ln-~LP~e-~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD 511 (565)
T KOG0472|consen 435 QKLTFLDLSNNLLN-DLPEE-MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD 511 (565)
T ss_pred hcceeeecccchhh-hcchh-hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence 45666666666665 66665 666666666666666665 5565555555556665666666644455688999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+.+|.+. .+|..++++.+|++|++.+|+|.
T Consensus 512 L~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 512 LQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cCCCchh-hCChhhccccceeEEEecCCccC
Confidence 9999998 78999999999999999999997
No 10
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.11 E-value=5.1e-11 Score=71.59 Aligned_cols=59 Identities=44% Similarity=0.597 Sum_probs=32.0
Q ss_pred CCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccc
Q 041920 126 NLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNN 184 (193)
Q Consensus 126 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 184 (193)
+|++|++++|+++...+..+..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555553333445555555555555555554444455555566666665554
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.10 E-value=3.8e-11 Score=99.45 Aligned_cols=110 Identities=27% Similarity=0.367 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
++++.|+|.+|-|. .+..+.+..++.|++|||+.|.++..--+.|..-.++++|+|++|+|+..-...|..+.+|.+|.
T Consensus 125 ghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 125 GHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred cceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 56777777777776 44444467777778888888877744334566666788888888888765566777778888888
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
|++|+++-..+..|+++++|+.|+|..|++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccccee
Confidence 8888888555567777888888888888663
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=1.1e-10 Score=70.08 Aligned_cols=60 Identities=47% Similarity=0.607 Sum_probs=33.2
Q ss_pred CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcC
Q 041920 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNL 161 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l 161 (193)
+|++|++++|+++...+..|.++++|++|++++|.++...|..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455555555555543334555555566666665555544445555566666666665543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.07 E-value=5.4e-12 Score=105.39 Aligned_cols=112 Identities=29% Similarity=0.397 Sum_probs=87.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCc-cCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L 154 (193)
.+++.|++++|.|+ ++.-. .....+|++|++++|+++ .+|+.++.+++|+.|.+.+|++.- -+|..++++..|+++
T Consensus 245 ~~LrrLNLS~N~it-eL~~~-~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf 321 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKIT-ELNMT-EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF 321 (1255)
T ss_pred hhhheeccCcCcee-eeecc-HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence 45677788888777 55544 566677888888888887 678888888888888888888652 368888888888888
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
..++|++. .+|+.+.++++|+.|.|+.|.+. ++|+.
T Consensus 322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPea 357 (1255)
T KOG0444|consen 322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEA 357 (1255)
T ss_pred Hhhccccc-cCchhhhhhHHHHHhccccccee-echhh
Confidence 88888887 77888888888888888888876 66654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.05 E-value=1.2e-11 Score=98.01 Aligned_cols=113 Identities=27% Similarity=0.335 Sum_probs=97.7
Q ss_pred CCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcC-CCCCccCCcccCCCCCC
Q 041920 73 DYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQ-NNLTGTIPKEIGSLRNL 151 (193)
Q Consensus 73 ~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L 151 (193)
+.+...+.|+|..|+|+ .+|+..|..+++|+.|||++|+|+.+.|..|.+++.|..|-+-+ |+|+......|+++.++
T Consensus 64 ~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred cCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 44578899999999999 88888899999999999999999988999999999987776555 99994444678899999
Q ss_pred CeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 152 VGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 152 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+.|.+.-|++.-.....|..+++|..|.+-.|.+.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence 99999999988777788889999999988888765
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.04 E-value=2.9e-11 Score=101.15 Aligned_cols=108 Identities=38% Similarity=0.552 Sum_probs=82.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCC-----------------
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLT----------------- 138 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~----------------- 138 (193)
.+...|++++|+|. .||...|.+++.|-.|||++|.+. .+|+.+..+..|++|.|++|.+.
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLh 203 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLH 203 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhh
Confidence 45667888888887 777777788888888888888887 56777788888888888887542
Q ss_pred --------ccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 139 --------GTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 139 --------~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
..+|.++..+.+|..+|+|.|.+. .+|+.+.++++|+.|+|++|.++
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 135666666777777888888887 67887878888888888888775
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.6e-10 Score=81.40 Aligned_cols=101 Identities=30% Similarity=0.348 Sum_probs=51.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhc-cCCCCCCEEeCcCCCCCccC-CcccCCCCCCCe
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQI-GSLSNLKYLGLDQNNLTGTI-PKEIGSLRNLVG 153 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~ 153 (193)
.+++.|++++|++. .+.. +..++.|++|++++|.++. +.+.+ ..+++|+.|++++|++...- -..+..+++|++
T Consensus 42 ~~L~~L~Ls~N~I~-~l~~--l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 42 DKLEVLDLSNNQIT-KLEG--LPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred cCCCEEECCCCCCc-cccC--ccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 57899999999998 6654 8889999999999999984 43334 46899999999999997422 245677899999
Q ss_pred eecccCcCCccC---hhhcCCCccCceeee
Q 041920 154 LDLNSNNLNGII---PKEIGSLRFLEVLEL 180 (193)
Q Consensus 154 L~l~~n~l~~~~---p~~~~~l~~L~~L~l 180 (193)
|++.+|.++..- ...+..+|+|+.||-
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999998541 224678999999884
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=8.2e-11 Score=101.59 Aligned_cols=104 Identities=27% Similarity=0.460 Sum_probs=85.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|+|++|++. .+|...+.++..|+.|++++|.++ .+|..+..++.|++|..-+|++. .+| .+..++.|+.+|
T Consensus 383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD 458 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD 458 (1081)
T ss_pred cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence 57888999999887 777776888889999999999988 67888888889999988888887 677 778889999999
Q ss_pred cccCcCCcc-ChhhcCCCccCceeeeeccc
Q 041920 156 LNSNNLNGI-IPKEIGSLRFLEVLELSSNN 184 (193)
Q Consensus 156 l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~ 184 (193)
++.|+++.. +|... ..++|++||+++|.
T Consensus 459 lS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred cccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 999998743 44433 23889999999985
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.95 E-value=2.3e-11 Score=96.73 Aligned_cols=91 Identities=34% Similarity=0.463 Sum_probs=41.4
Q ss_pred ccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccC-CCCCCCeeecccCcCCccChhhc
Q 041920 91 ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIG-SLRNLVGLDLNSNNLNGIIPKEI 169 (193)
Q Consensus 91 ~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~ 169 (193)
.+|+. ++.+.+|..|++..|++. .+| .|.++..|+.+.++.|.++ .+|.... .++++.+||+..|+++ ..|..+
T Consensus 197 tlP~~-lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~ 271 (565)
T KOG0472|consen 197 TLPPE-LGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI 271 (565)
T ss_pred cCChh-hcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHH
Confidence 44443 444444444444444443 233 3344444444444444443 3333322 4445555555555554 445555
Q ss_pred CCCccCceeeeeccccC
Q 041920 170 GSLRFLEVLELSSNNLN 186 (193)
Q Consensus 170 ~~l~~L~~L~l~~N~l~ 186 (193)
..+.+|..||+++|.++
T Consensus 272 clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS 288 (565)
T ss_pred HHhhhhhhhcccCCccc
Confidence 45555555555555554
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.93 E-value=9.7e-10 Score=95.81 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=54.0
Q ss_pred CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeee
Q 041920 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELS 181 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 181 (193)
+|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.++++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 34455555555542 3321 245666666666666 34543 235677888888887 678888899999999999
Q ss_pred ccccCccCCC
Q 041920 182 SNNLNGELPI 191 (193)
Q Consensus 182 ~N~l~g~iP~ 191 (193)
+|+++|.+|.
T Consensus 454 ~N~Ls~~~~~ 463 (788)
T PRK15387 454 GNPLSERTLQ 463 (788)
T ss_pred CCCCCchHHH
Confidence 9999987654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.88 E-value=6.8e-09 Score=90.69 Aligned_cols=102 Identities=25% Similarity=0.414 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|++++|+++ .+|.. + .++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPEN-L--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChh-h--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 45677777777777 56554 2 246777777777776 4554332 35677777777766 5555443 3677777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|+++ .+|..+. ++|+.|++++|.++ .+|.
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence 7777776 4555443 46777777777666 3443
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=3.1e-10 Score=87.60 Aligned_cols=106 Identities=33% Similarity=0.438 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|+++.|++. .+.. +..+++|+.||+++|.++ .+...-..+.++++|.++.|.+... ..++++.+|..||
T Consensus 307 Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 307 PKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLD 380 (490)
T ss_pred cceeEEecccccee-eehh--hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheecc
Confidence 35666666666665 3333 555666666666666665 3333334556666666666666522 4567778899999
Q ss_pred cccCcCCcc-ChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNNLNGI-IPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|+|... --..++++|.|+++.+.+|++.+
T Consensus 381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999998732 12358899999999999999974
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.83 E-value=1.4e-10 Score=100.20 Aligned_cols=106 Identities=34% Similarity=0.479 Sum_probs=95.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCc-hhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIP-SQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..++.|.+.+|.+++...+. +.++++|+.|+|++|.+. .+| ..+.++..|+.|+||+|+++ .+|..+..++.|++|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCcccccchhh-hccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 35778899999999887776 999999999999999998 455 55789999999999999999 899999999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
...+|++. .+| .+..++.|+.+|++.|+++
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 99999998 678 7889999999999999886
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.82 E-value=1.8e-08 Score=92.47 Aligned_cols=111 Identities=24% Similarity=0.329 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++.++.+. .++.. +..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDG-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccc-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 35666666666665 55554 56667777777766553334553 56667777777776655456666677777777777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|...+.+|..+ ++++|+.|++++|...+.+|
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 77654434555544 45666666666654433443
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.77 E-value=4.4e-08 Score=89.97 Aligned_cols=112 Identities=22% Similarity=0.238 Sum_probs=89.8
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|++.++.+. .+|.. + .+.+|+.|++.+|.+. .++..+..+++|+.++++++.....+|. +..+++|+.|+
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 34677777777665 66664 4 5688999999999987 5677788899999999998765446664 77889999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
+++|.....+|..+.++++|+.|++++|...+.+|..
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~ 700 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG 700 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc
Confidence 9998766688999999999999999997655677764
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=3.6e-09 Score=83.69 Aligned_cols=108 Identities=30% Similarity=0.425 Sum_probs=50.5
Q ss_pred EEEEEcCCCCccc----ccCCCcCCCC-CCCcEEEcccCccCcc----CchhccCCCCCCEEeCcCCCCCcc----CCcc
Q 041920 78 IILIDLQESNIKG----ELGRLNFSCF-PNLQYLDLWNNSLSGS----IPSQIGSLSNLKYLGLDQNNLTGT----IPKE 144 (193)
Q Consensus 78 l~~L~l~~n~l~~----~l~~~~~~~l-~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 144 (193)
++.|++++|.+.+ .+... +..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 5555555555542 11111 3333 5555566665555521 122334445555555555555421 1222
Q ss_pred cCCCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeeccccC
Q 041920 145 IGSLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 145 ~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+...++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 33334555566655555422 2223444555555665555554
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=9.9e-10 Score=90.83 Aligned_cols=108 Identities=31% Similarity=0.573 Sum_probs=92.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
-+..+-+++|+++ .+|.. ++.+..|..||.+.|++. .+|..++++.+|+.|++.+|++. .+|..+..+ .|..||+
T Consensus 144 pLkvli~sNNkl~-~lp~~-ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDf 218 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEE-IGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDF 218 (722)
T ss_pred cceeEEEecCccc-cCCcc-cccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeec
Confidence 4677788888887 78877 788888999999999987 67888899999999999999988 788888754 6899999
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+.|+++ .+|-.|.+|..|++|-|.+|++. +-|.
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 999998 89999999999999999999997 4443
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.72 E-value=5.8e-08 Score=84.96 Aligned_cols=103 Identities=25% Similarity=0.374 Sum_probs=83.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+.+.+++++++++ .+|.. + .+.++.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 35688999999998 67764 4 357999999999998 5676543 58999999999998 6777553 4799999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
+++|++. .+|..+. .+|+.|++++|+++ .+|+.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~ 280 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPEN 280 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccc
Confidence 9999998 6787664 58999999999998 57764
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=2.3e-09 Score=82.81 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=74.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.++.+|+++|.|+ .+..+ ..-.+.++.|++++|.+.. +. .+..+++|+.||+++|.++ .+...-.++.+.+.|.+
T Consensus 285 ~LtelDLS~N~I~-~iDES-vKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDES-VKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhh-hhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 3567788888777 55554 6667788888888888762 22 3677788888888888877 45555556677788888
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+.|.+.. -.++.++-+|..||+++|++.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchh
Confidence 8887752 235777888999999999874
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.69 E-value=5.2e-09 Score=82.75 Aligned_cols=111 Identities=26% Similarity=0.384 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCC---CCcEEEcccCccCcc----CchhccCC-CCCCEEeCcCCCCCcc----CC
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFP---NLQYLDLWNNSLSGS----IPSQIGSL-SNLKYLGLDQNNLTGT----IP 142 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~---~L~~L~l~~n~l~~~----~p~~~~~l-~~L~~L~ls~n~l~~~----~p 142 (193)
..+++.|++++|.+.+..+.. +..+. +|++|++++|.+++. +...+..+ ++|+.|++++|.+++. ++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 468999999999987544443 44444 499999999998732 23345566 8999999999999843 33
Q ss_pred cccCCCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeeccccC
Q 041920 143 KEIGSLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
..+..+..|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 4566678899999999999853 3445566789999999999876
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.63 E-value=6.5e-09 Score=82.73 Aligned_cols=96 Identities=27% Similarity=0.288 Sum_probs=82.1
Q ss_pred ccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcC
Q 041920 91 ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIG 170 (193)
Q Consensus 91 ~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 170 (193)
..|..-|..+++|++|++++|.++++-+..|.++..++.|.|..|++...-...|.++..|++|++.+|+|+-..|..|.
T Consensus 264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 44443478899999999999999988888899999999999999998865567788889999999999999978888898
Q ss_pred CCccCceeeeeccccC
Q 041920 171 SLRFLEVLELSSNNLN 186 (193)
Q Consensus 171 ~l~~L~~L~l~~N~l~ 186 (193)
.+.+|..|++-.|++.
T Consensus 344 ~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 344 TLFSLSTLNLLSNPFN 359 (498)
T ss_pred ccceeeeeehccCccc
Confidence 8999999999888774
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.61 E-value=1.3e-07 Score=82.86 Aligned_cols=78 Identities=28% Similarity=0.348 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccC-----------------CCCCCEEeCcCCCCC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGS-----------------LSNLKYLGLDQNNLT 138 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----------------l~~L~~L~ls~n~l~ 138 (193)
.+++.|++.+|+++ .+|.. +++|++|++++|.++ .+|..+.. +..|+.|++++|+++
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 295 (788)
T ss_pred cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence 35667777777776 45542 466777777777776 33421110 123344444444444
Q ss_pred ccCCcccCCCCCCCeeecccCcCCc
Q 041920 139 GTIPKEIGSLRNLVGLDLNSNNLNG 163 (193)
Q Consensus 139 ~~~p~~~~~l~~L~~L~l~~n~l~~ 163 (193)
.+|.. .++|+.|++++|++++
T Consensus 296 -~LP~~---p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 296 -SLPVL---PPGLQELSVSDNQLAS 316 (788)
T ss_pred -ccccc---ccccceeECCCCcccc
Confidence 23331 3567777888777774
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.52 E-value=6.4e-09 Score=71.63 Aligned_cols=111 Identities=24% Similarity=0.317 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.+++++|.+. .+|+..-..++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 46788899999888 666653456678899999999998 67888899999999999999988 6777777788888888
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
..+|.+. .+|..+..-...-..++.++++.+.-|
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence 8888876 566554433333444556666665433
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.52 E-value=6.2e-09 Score=86.23 Aligned_cols=109 Identities=29% Similarity=0.523 Sum_probs=75.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.++.++++.|++. .+|.. +..+ -|+.|-+++|+++ .+|+.++.+++|..|+.+.|.+. .+|..++.+.+|+.|++
T Consensus 122 ~lt~l~ls~NqlS-~lp~~-lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 122 ALTFLDLSSNQLS-HLPDG-LCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV 196 (722)
T ss_pred HHHHhhhccchhh-cCChh-hhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence 3556677777776 66654 4433 3667777777776 56666777777777777777776 66777777777777777
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccCccCCCCC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPINF 193 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 193 (193)
..|++. .+|+.+. .-.|..||++.|+++ .||-.|
T Consensus 197 rRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 197 RRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred hhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhh
Confidence 777776 5666666 335778888888887 777654
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.49 E-value=1e-07 Score=53.13 Aligned_cols=36 Identities=42% Similarity=0.624 Sum_probs=17.6
Q ss_pred CCCeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 150 NLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 150 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+|++|++++|+++ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=9.2e-08 Score=78.19 Aligned_cols=102 Identities=40% Similarity=0.614 Sum_probs=57.5
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCC-CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFP-NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.++.+++.+|.+. .+++. ...+. +|+.|++++|.+. .+|..+..++.|+.|++++|.++ .+|...+..+.|+.|+
T Consensus 117 ~l~~L~l~~n~i~-~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCCcccc-cCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 3556666666665 55553 44442 6666666666665 34344556666666666666665 4444444555666666
Q ss_pred cccCcCCccChhhcCCCccCceeeeecc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSN 183 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N 183 (193)
+++|+++ .+|........|+.+.+++|
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNN 219 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence 6666665 44544434444566666555
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.45 E-value=2.9e-09 Score=73.30 Aligned_cols=111 Identities=23% Similarity=0.361 Sum_probs=86.1
Q ss_pred CCCEEEEEcCCCCcccccCCC--cCCCCCCCcEEEcccCccCccCchhcc-CCCCCCEEeCcCCCCCccCCcccCCCCCC
Q 041920 75 EGSIILIDLQESNIKGELGRL--NFSCFPNLQYLDLWNNSLSGSIPSQIG-SLSNLKYLGLDQNNLTGTIPKEIGSLRNL 151 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 151 (193)
......++++.+.+. .+++. .+.....|+..++++|.+. .+|..|. ..+.++.+++++|.++ .+|..+..++.|
T Consensus 26 akE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aL 102 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPAL 102 (177)
T ss_pred HHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHh
Confidence 344556777777665 33332 1445567788899999998 5665554 4568999999999999 789999999999
Q ss_pred CeeecccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 152 VGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 152 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+.|+++.|.+. ..|..+..+.+|.+|+..+|... +||
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid 139 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EID 139 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence 99999999998 66888878999999999988765 554
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.44 E-value=7.8e-08 Score=85.49 Aligned_cols=105 Identities=31% Similarity=0.491 Sum_probs=74.4
Q ss_pred CEEEEEcCCCC--cccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 77 SIILIDLQESN--IKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 77 ~l~~L~l~~n~--l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++|-+..|. +. .++...|..++.|++||+++|.--+.+|..++.+-+|++|++++..++ .+|..++++..|.+|
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 46666666665 33 444444667788888888877655577877888888888888888877 778888888888888
Q ss_pred ecccCcCCccChhhcCCCccCceeeeecc
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSN 183 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 183 (193)
++.++.....+|.....+.+|++|.+..-
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 88777655555666666778887777543
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=2.2e-07 Score=75.97 Aligned_cols=106 Identities=37% Similarity=0.585 Sum_probs=87.2
Q ss_pred EEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCC-CCCEEeCcCCCCCccCCcccCCCCCCCeeeccc
Q 041920 80 LIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLS-NLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158 (193)
Q Consensus 80 ~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 158 (193)
.++...+.+...+.. +..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.++.|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 477777776434433 566688999999999998 5666666664 9999999999998 7777888999999999999
Q ss_pred CcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 159 NNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 159 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
|+++ .+|......+.|+.|++++|.++ .+|.
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~ 203 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCch
Confidence 9999 66776668899999999999997 7775
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=1.1e-06 Score=48.91 Aligned_cols=36 Identities=39% Similarity=0.683 Sum_probs=15.8
Q ss_pred CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCC
Q 041920 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLT 138 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 138 (193)
+|++|++++|+++ .+|+.+.++++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444455555444 23333444444444444444444
No 40
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.27 E-value=1.3e-06 Score=63.99 Aligned_cols=102 Identities=25% Similarity=0.276 Sum_probs=78.6
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCC--cccCCCCCCCee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIP--KEIGSLRNLVGL 154 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L 154 (193)
....+|+++|.+. .++. |..++.|.+|.+.+|.|+...|.--..+++|+.|.+.+|.+. .+. ..+..++.|++|
T Consensus 43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 4668999999887 5544 888999999999999999666644455678999999999987 332 345678899999
Q ss_pred ecccCcCCcc---ChhhcCCCccCceeeeec
Q 041920 155 DLNSNNLNGI---IPKEIGSLRFLEVLELSS 182 (193)
Q Consensus 155 ~l~~n~l~~~---~p~~~~~l~~L~~L~l~~ 182 (193)
.+-+|.++.. --..+..+|+|+.||+..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9999988733 223567889999999764
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.22 E-value=1.2e-06 Score=78.13 Aligned_cols=106 Identities=29% Similarity=0.346 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCc--cCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNS--LSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~--l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.++.+.+-+|.+. .++.. ...+.|++|-+.+|. +.......|..++.|+.||+++|.--+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4566666666665 44442 234479999999986 443444568899999999999988767999999999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++++.++ .+|..++++.+|.+|++..+.-.
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l 631 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRL 631 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheecccccccc
Confidence 99999998 88999999999999999987543
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=4.5e-08 Score=83.48 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=64.9
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecc
Q 041920 78 IILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLN 157 (193)
Q Consensus 78 l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 157 (193)
+...+++.|.+. .+..+ +.-++.++.|+|++|+++.. . .+..+++|++||+++|.+. .+|..-..-..|+.|.++
T Consensus 166 L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 344566666665 44333 66677778888888887632 2 5677778888888888877 455422111237777777
Q ss_pred cCcCCccChhhcCCCccCceeeeeccccC
Q 041920 158 SNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 158 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+|.++.. .++.++.+|+.||++.|-+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~ 267 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLS 267 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence 7777622 34667777777777777665
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.2e-07 Score=73.39 Aligned_cols=87 Identities=31% Similarity=0.412 Sum_probs=46.0
Q ss_pred CCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCC--cccCCCCCCCeeecccCcCCcc-Chhh-----cC
Q 041920 99 CFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIP--KEIGSLRNLVGLDLNSNNLNGI-IPKE-----IG 170 (193)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~-~p~~-----~~ 170 (193)
.+|+|+.|++..|...........-+..|+.|+|++|.+. ..+ ...+.++.|+.|+++.+++... .|.. ..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~ 298 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH 298 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence 3455555555555321122222233455666677766665 223 3445666666666666666532 2222 23
Q ss_pred CCccCceeeeeccccC
Q 041920 171 SLRFLEVLELSSNNLN 186 (193)
Q Consensus 171 ~l~~L~~L~l~~N~l~ 186 (193)
.+++|++|++..|++.
T Consensus 299 ~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIR 314 (505)
T ss_pred ccccceeeecccCccc
Confidence 4566777777777663
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.15 E-value=8.2e-07 Score=73.24 Aligned_cols=104 Identities=32% Similarity=0.413 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.+++.+|.+. .+... +..+++|++|++++|.|+... .+..++.|+.|++++|.++.. ..+..+..|+.++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD 168 (414)
T ss_pred cceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence 45667777777776 44332 556777777777777776332 245566677777777777632 3344466777777
Q ss_pred cccCcCCccChhh-cCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKE-IGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~-~~~l~~L~~L~l~~N~l~ 186 (193)
+++|+++..-+ . ...+.+++.+.+.+|.+.
T Consensus 169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 77777764322 1 355666777777766654
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.12 E-value=1.4e-06 Score=48.24 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.2
Q ss_pred ccccccHHHHHHHhcCCCCCCCCCCCC--CCCCcccceeeC
Q 041920 35 IHVAASETERQALLNSGWWKDRIPHNT--SDHCKWVGIICD 73 (193)
Q Consensus 35 ~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~c~w~gv~c~ 73 (193)
.+..++.++|+++.........+|... .++|.|.||.|+
T Consensus 3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 466889999999987556788899976 799999999995
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=9.9e-07 Score=72.75 Aligned_cols=103 Identities=30% Similarity=0.436 Sum_probs=80.8
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.+..++++.|.+. .+... +..+++++.+++.+|.+.+ +...+..+++|++|++++|.|+.. ..+..++.|+.|++
T Consensus 73 ~l~~l~l~~n~i~-~~~~~-l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 73 SLKELNLRQNLIA-KILNH-LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred hHHhhccchhhhh-hhhcc-cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 4455667777776 33232 7889999999999999984 333367899999999999999854 44567778999999
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|.++. + ..+..+++|+.+++++|.++
T Consensus 148 ~~N~i~~-~-~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 148 SGNLISD-I-SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred ccCcchh-c-cCCccchhhhcccCCcchhh
Confidence 9999983 3 34666899999999999887
No 47
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.3e-05 Score=57.56 Aligned_cols=104 Identities=26% Similarity=0.272 Sum_probs=74.0
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeeccc
Q 041920 79 ILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158 (193)
Q Consensus 79 ~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 158 (193)
+.+++++..+. .+... -.-+.+...+||++|.+- .++ .|..++.|.+|.+.+|+|+..-|.--.-+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip-~ienl-g~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENL-GATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccc-chhhc-cccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 45666666554 22220 111345678999999986 333 578899999999999999965555445568899999999
Q ss_pred CcCCccC-hhhcCCCccCceeeeeccccC
Q 041920 159 NNLNGII-PKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 159 n~l~~~~-p~~~~~l~~L~~L~l~~N~l~ 186 (193)
|.+...- -..+..+|+|++|.+-+|+++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchh
Confidence 9987321 123567899999999999875
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.89 E-value=3.1e-07 Score=78.53 Aligned_cols=104 Identities=32% Similarity=0.416 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCch-hccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPS-QIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..++.|+|+.|.+. ... .+..++.|++||+++|.+. .+|. ...++ +|+.|++++|.++.. ..+.++.+|+.|
T Consensus 187 ~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhh-hhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence 46789999999988 444 2788999999999999997 4442 12233 499999999999733 557789999999
Q ss_pred ecccCcCCccCh-hhcCCCccCceeeeeccccC
Q 041920 155 DLNSNNLNGIIP-KEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~ 186 (193)
|+++|-+.+.-. ..++.+..|+.|.|.+|++-
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999999876421 23556788999999999874
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.69 E-value=2.5e-05 Score=59.32 Aligned_cols=99 Identities=26% Similarity=0.347 Sum_probs=60.5
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccC--ccCccCchhccCCCCCCEEeCcCCCCCccCCc---ccCCCCCC
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNN--SLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPK---EIGSLRNL 151 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~---~~~~l~~L 151 (193)
.++.+.+.+.+++ .+.. +..+++|+.|.++.| ++.+.++.-...+++|+++++++|++.. +. .+..+.+|
T Consensus 44 ~le~ls~~n~glt-t~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 44 ELELLSVINVGLT-TLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred chhhhhhhcccee-eccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 4455555565555 3322 667778888888888 4444444434455888888888888762 22 23445667
Q ss_pred CeeecccCcCCccC---hhhcCCCccCceeee
Q 041920 152 VGLDLNSNNLNGII---PKEIGSLRFLEVLEL 180 (193)
Q Consensus 152 ~~L~l~~n~l~~~~---p~~~~~l~~L~~L~l 180 (193)
..|++.+|..++.- -..|.-+++|++||-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 77788777765421 123556677777664
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=9.3e-06 Score=65.82 Aligned_cols=83 Identities=27% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCCcccc--cCCCcCCCCCCCcEEEcccCccCccCchh-ccCCCCCCEEeCcCCCCCcc-CCcccCCCCCC
Q 041920 76 GSIILIDLQESNIKGE--LGRLNFSCFPNLQYLDLWNNSLSGSIPSQ-IGSLSNLKYLGLDQNNLTGT-IPKEIGSLRNL 151 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~--l~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L 151 (193)
.+++.||++.|=+... +-. ...+|++|+.|+++.|.+.-...+. -..+++|+.|.++.+.++.. +-.....+|+|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CcceeecchhhhHHhHHHHHH-HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 4677788877755421 111 1456777777888777764221111 12456677777777776531 11112233444
Q ss_pred CeeecccC
Q 041920 152 VGLDLNSN 159 (193)
Q Consensus 152 ~~L~l~~n 159 (193)
+.|+++.|
T Consensus 225 ~~L~L~~N 232 (505)
T KOG3207|consen 225 EVLYLEAN 232 (505)
T ss_pred HHhhhhcc
Confidence 44444444
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.62 E-value=3.1e-05 Score=58.82 Aligned_cols=87 Identities=24% Similarity=0.332 Sum_probs=64.5
Q ss_pred CCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCC--CCCccCCcccCCCCCCCeeecccCcCCccChh---hcCC
Q 041920 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQN--NLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPK---EIGS 171 (193)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~---~~~~ 171 (193)
...+..|+.+.+.+..++. + ..+..+++|++|.++.| ++.+.++.....+++|+++++++|++.- +. .+..
T Consensus 39 ~d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhh
Confidence 4556677777777777662 2 24678899999999999 6666666556667999999999999872 33 2456
Q ss_pred CccCceeeeeccccCc
Q 041920 172 LRFLEVLELSSNNLNG 187 (193)
Q Consensus 172 l~~L~~L~l~~N~l~g 187 (193)
+.+|..|++.+|..++
T Consensus 115 l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTN 130 (260)
T ss_pred hcchhhhhcccCCccc
Confidence 7788899999887653
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=6.5e-05 Score=65.64 Aligned_cols=109 Identities=22% Similarity=0.264 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCccc-ccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCc-cCCcccCCCCCCCe
Q 041920 76 GSIILIDLQESNIKG-ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVG 153 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~ 153 (193)
+.+++|.+.+-.+.. ++.. ...++++|..||+++.+++.. ..++.+++|+.|.+.+=.+.. ..-..+..+++|++
T Consensus 148 PsL~sL~i~~~~~~~~dF~~-lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQ-LCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred cccceEEecCceecchhHHH-HhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 456666666654432 2222 256677778888887777632 456777777777776655542 11134566788888
Q ss_pred eecccCcCCccC--hh----hcCCCccCceeeeeccccCc
Q 041920 154 LDLNSNNLNGII--PK----EIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 154 L~l~~n~l~~~~--p~----~~~~l~~L~~L~l~~N~l~g 187 (193)
||+|..+..... .. .-..+|.|+.||.+++.+.+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 888876654321 11 12357788888888766553
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.36 E-value=0.0007 Score=55.46 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=15.3
Q ss_pred CCCeeecccCcCCccChhhcCCCccCceeeeecc
Q 041920 150 NLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSN 183 (193)
Q Consensus 150 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 183 (193)
+|++|++++|... .+|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555543 2333222 35666666554
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.34 E-value=3.4e-05 Score=60.92 Aligned_cols=108 Identities=24% Similarity=0.319 Sum_probs=62.6
Q ss_pred CEEEEEcCCCCcccc----cCCCcCCCCCCCcEEEcccCccCcc----CchhccCCCCCCEEeCcCCCCCccCCccc---
Q 041920 77 SIILIDLQESNIKGE----LGRLNFSCFPNLQYLDLWNNSLSGS----IPSQIGSLSNLKYLGLDQNNLTGTIPKEI--- 145 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~----l~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~--- 145 (193)
.+..+.+..|+|..+ +.. .+...++|++||++.|.++.. +...++.+++|+.++++++.++......+
T Consensus 186 ~leevr~~qN~I~~eG~~al~e-al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAE-ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred ccceEEEecccccCchhHHHHH-HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 455666666655421 111 255667777777777776521 23345566677777777777664322111
Q ss_pred --CCCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeecccc
Q 041920 146 --GSLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNL 185 (193)
Q Consensus 146 --~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l 185 (193)
...++|+++.+.+|.++.. +-......+.|..|++++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2346777777777777632 222344567777777777776
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.32 E-value=7.2e-05 Score=59.14 Aligned_cols=111 Identities=21% Similarity=0.203 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCcccccCCC---cCCCCCCCcEEEcccCccCccCc-------------hhccCCCCCCEEeCcCCCCCc
Q 041920 76 GSIILIDLQESNIKGELGRL---NFSCFPNLQYLDLWNNSLSGSIP-------------SQIGSLSNLKYLGLDQNNLTG 139 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~---~~~~l~~L~~L~l~~n~l~~~~p-------------~~~~~l~~L~~L~ls~n~l~~ 139 (193)
++++.++|++|-+....++. .+.....|++|.|.+|.+....- .-...-++|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 47899999999776433322 13456788888888888752111 112345778888888888763
Q ss_pred cC----CcccCCCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeeccccC
Q 041920 140 TI----PKEIGSLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 140 ~~----p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
.. ...+...+.|+.+.++.|.|... +-..+.+++.|++||+..|.|+
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 21 23455567888888888877521 2235677888888888888775
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=4.3e-06 Score=64.34 Aligned_cols=98 Identities=21% Similarity=0.248 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCC--cccCCCCCCCe
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIP--KEIGSLRNLVG 153 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~ 153 (193)
..+..|++.+++++ .|.- ...++.|++|.|+-|.|+...| +..++.|+.|+|..|.|.+ +. .-+.++++|+.
T Consensus 19 ~~vkKLNcwg~~L~-DIsi--c~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-DISI--CEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHhhhhcccCCCcc-HHHH--HHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 45666666666666 3322 4567777777777777764333 4566777777777777763 22 23456677777
Q ss_pred eecccCcCCccChh-----hcCCCccCceee
Q 041920 154 LDLNSNNLNGIIPK-----EIGSLRFLEVLE 179 (193)
Q Consensus 154 L~l~~n~l~~~~p~-----~~~~l~~L~~L~ 179 (193)
|.|..|--.|.-+. .+.-+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766554332 244455555554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.29 E-value=0.0011 Score=54.41 Aligned_cols=97 Identities=16% Similarity=0.248 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCC-CCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQN-NLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L 154 (193)
...+.|+++++.+. .+|. + ..+|++|.++++.--..+|+.+ .++|+.|++++| .+. .+|. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 34667888888776 5552 2 2357888887643222455433 256777888777 443 4443 34444
Q ss_pred ecccCcCC--ccChhhcCCC------------------ccCceeeeeccccC
Q 041920 155 DLNSNNLN--GIIPKEIGSL------------------RFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~--~~~p~~~~~l------------------~~L~~L~l~~N~l~ 186 (193)
++..+... +.+|..+..+ ++|++|++++|...
T Consensus 118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 45444321 1344333222 47888999887654
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00044 Score=54.00 Aligned_cols=83 Identities=30% Similarity=0.394 Sum_probs=40.5
Q ss_pred CEEEEEcCCCCccc--ccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccC-CcccCCCCCCCe
Q 041920 77 SIILIDLQESNIKG--ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTI-PKEIGSLRNLVG 153 (193)
Q Consensus 77 ~l~~L~l~~n~l~~--~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~ 153 (193)
+|..+|+.+|.|++ ++..- +.++|.|++|+++.|.+...+-..-..+.+|++|.|.+..+.+.. ...+..+|.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~i-le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAI-LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHH-HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 45556666665552 22221 455666666666666654222111123445666666655554322 223344555555
Q ss_pred eecccCc
Q 041920 154 LDLNSNN 160 (193)
Q Consensus 154 L~l~~n~ 160 (193)
++++.|.
T Consensus 151 lHmS~N~ 157 (418)
T KOG2982|consen 151 LHMSDNS 157 (418)
T ss_pred hhhccch
Confidence 5555553
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.00034 Score=54.64 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc-CchhccCCCCCCEEeCcCC
Q 041920 74 YEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS-IPSQIGSLSNLKYLGLDQN 135 (193)
Q Consensus 74 ~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~n 135 (193)
...+++.|+++.|.+...|... -..+.+|++|-|.+..+... ....+..+|.++.|.++.|
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 3456666666666665443321 02445566666655554322 1223345555555555555
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0079 Score=40.89 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.+.+.. .+. .+....|.+.++++.+.+..+ +.......|..+++++.+.+.. .+.......+..+++|+.++
T Consensus 12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 4678888875 465 676666888889999998775 5544445678887899999976 44423345667788999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeec
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSS 182 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~ 182 (193)
+..+ +...-...|.+. +|+.+.+..
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC
Confidence 8765 542333456665 888887765
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.64 E-value=0.0013 Score=57.60 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCccc-ccCCCcCCCCCCCcEEEcccCccCcc-CchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 77 SIILIDLQESNIKG-ELGRLNFSCFPNLQYLDLWNNSLSGS-IPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 77 ~l~~L~l~~n~l~~-~l~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
+++.|++++...-. .-+...-..||+|++|.+.+-.+... +-.-..++++|..||+|+.+++.. ..++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 56677776654321 11111134588999999988776422 223346789999999999999843 678889999999
Q ss_pred ecccCcCCc-cChhhcCCCccCceeeeecccc
Q 041920 155 DLNSNNLNG-IIPKEIGSLRFLEVLELSSNNL 185 (193)
Q Consensus 155 ~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l 185 (193)
.+.+=.+.. ..-..+.++++|++||+|....
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 887766652 1123577899999999997644
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.58 E-value=0.00075 Score=31.44 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=10.8
Q ss_pred cCceeeeeccccCccCCCC
Q 041920 174 FLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 174 ~L~~L~l~~N~l~g~iP~~ 192 (193)
+|++||+++|+++ .+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 3566666666666 56654
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.45 E-value=0.001 Score=30.92 Aligned_cols=19 Identities=47% Similarity=0.627 Sum_probs=10.6
Q ss_pred CCeeecccCcCCccChhhcC
Q 041920 151 LVGLDLNSNNLNGIIPKEIG 170 (193)
Q Consensus 151 L~~L~l~~n~l~~~~p~~~~ 170 (193)
|++||+++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666665 4554443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.12 E-value=0.02 Score=38.81 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=55.4
Q ss_pred cCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCC
Q 041920 92 LGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGS 171 (193)
Q Consensus 92 l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 171 (193)
++...|.+.++|+.+.+.. .+...-...|.++++|+.+.+..+ +.......+..+++++.+.+.+ .+.......|..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4444588888999999875 566455567888889999999885 6644456677888999999976 444334456777
Q ss_pred CccCceeeeecc
Q 041920 172 LRFLEVLELSSN 183 (193)
Q Consensus 172 l~~L~~L~l~~N 183 (193)
+++|+.+++..+
T Consensus 80 ~~~l~~i~~~~~ 91 (129)
T PF13306_consen 80 CTNLKNIDIPSN 91 (129)
T ss_dssp -TTECEEEETTT
T ss_pred cccccccccCcc
Confidence 999999998765
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.89 E-value=0.0067 Score=47.05 Aligned_cols=110 Identities=26% Similarity=0.352 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCCcccc----cCCCcCCCCCCCcEEEcccCccC---ccCc-------hhccCCCCCCEEeCcCCCCCccC
Q 041920 76 GSIILIDLQESNIKGE----LGRLNFSCFPNLQYLDLWNNSLS---GSIP-------SQIGSLSNLKYLGLDQNNLTGTI 141 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~----l~~~~~~~l~~L~~L~l~~n~l~---~~~p-------~~~~~l~~L~~L~ls~n~l~~~~ 141 (193)
..++.+++++|.+..+ +... +.+-.+|+..+++.-... ..++ ..+-++|+|+..+||.|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~-ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNV-IANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHH-HhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5678899999988743 2222 555667777777653221 1122 23456788888888888887666
Q ss_pred Ccc----cCCCCCCCeeecccCcCCcc----Chh---------hcCCCccCceeeeeccccC
Q 041920 142 PKE----IGSLRNLVGLDLNSNNLNGI----IPK---------EIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 142 p~~----~~~l~~L~~L~l~~n~l~~~----~p~---------~~~~l~~L~~L~l~~N~l~ 186 (193)
|.. +..-..|.+|.+++|.+... +.. ....-|.|+.++...|.+-
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 644 34457788888888877521 111 1234567888888877664
No 66
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.88 E-value=8.1e-05 Score=56.07 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.||++.|++. .+..- |+.++.+..|+++.|.+. ..|..+..+..++.+++-.|..+ ..|.+++..+.++.++
T Consensus 42 kr~tvld~~s~r~v-n~~~n-~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKN-FSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHH-hhccc-hHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 56777777777765 44443 666677777777777776 56666777777777777777776 6777777777777777
Q ss_pred cccCcCC
Q 041920 156 LNSNNLN 162 (193)
Q Consensus 156 l~~n~l~ 162 (193)
...|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7776654
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.59 E-value=0.0059 Score=26.45 Aligned_cols=13 Identities=54% Similarity=0.713 Sum_probs=4.8
Q ss_pred CCCeeecccCcCC
Q 041920 150 NLVGLDLNSNNLN 162 (193)
Q Consensus 150 ~L~~L~l~~n~l~ 162 (193)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555554443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.00091 Score=51.82 Aligned_cols=86 Identities=23% Similarity=0.301 Sum_probs=68.4
Q ss_pred CCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChh--hcCCCccCce
Q 041920 100 FPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPK--EIGSLRFLEV 177 (193)
Q Consensus 100 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~ 177 (193)
+.+.+.|++-++.++.+ .-...|+.|+.|.|+-|.|+.. ..+..++.|+.|+|..|.|.. +.+ -+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence 55677888888888743 2246899999999999999843 456788999999999999973 332 4678999999
Q ss_pred eeeeccccCccCC
Q 041920 178 LELSSNNLNGELP 190 (193)
Q Consensus 178 L~l~~N~l~g~iP 190 (193)
|=|..|+-.|.-+
T Consensus 93 LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 93 LWLDENPCCGEAG 105 (388)
T ss_pred HhhccCCcccccc
Confidence 9999998877654
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.22 E-value=0.033 Score=43.34 Aligned_cols=110 Identities=23% Similarity=0.208 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCcccccCCC---cCCCCCCCcEEEcccCccCccCchhc-------------cCCCCCCEEeCcCCCCCc
Q 041920 76 GSIILIDLQESNIKGELGRL---NFSCFPNLQYLDLWNNSLSGSIPSQI-------------GSLSNLKYLGLDQNNLTG 139 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~---~~~~l~~L~~L~l~~n~l~~~~p~~~-------------~~l~~L~~L~ls~n~l~~ 139 (193)
.+++.+++++|-+....|+. .++.-+.|.+|.+++|.+....-..+ ..-|.|++....+|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 46777777777666444432 13444667777777776642111111 13356777777777765
Q ss_pred cCCc-----ccCCCCCCCeeecccCcCCcc-----ChhhcCCCccCceeeeeccccC
Q 041920 140 TIPK-----EIGSLRNLVGLDLNSNNLNGI-----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 140 ~~p~-----~~~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
..|. .+..-..|+++.+..|.|.-. +-..+..+.+|++||+..|-|+
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence 2221 111224566666666666421 0113446777888888888765
No 70
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.20 E-value=0.00038 Score=52.54 Aligned_cols=93 Identities=23% Similarity=0.269 Sum_probs=77.0
Q ss_pred ccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcC
Q 041920 91 ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIG 170 (193)
Q Consensus 91 ~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 170 (193)
++|-..+..+...+.||++.|.+- ..-..|+-++.|..++++.|.+. .+|..++....++.+++.+|..+ ..|..++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 444334778889999999999875 23345667788899999999998 88999998888999999888887 7899999
Q ss_pred CCccCceeeeeccccC
Q 041920 171 SLRFLEVLELSSNNLN 186 (193)
Q Consensus 171 ~l~~L~~L~l~~N~l~ 186 (193)
..+.++++++-+|.|.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999998875
No 71
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.0044 Score=48.62 Aligned_cols=106 Identities=22% Similarity=0.183 Sum_probs=52.4
Q ss_pred CCCEEEEEcCCC-CcccccCCCcCCCCCCCcEEEcccCccCccCch----hc-------------------------cCC
Q 041920 75 EGSIILIDLQES-NIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPS----QI-------------------------GSL 124 (193)
Q Consensus 75 ~~~l~~L~l~~n-~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~----~~-------------------------~~l 124 (193)
+..++.++++++ +++..-..-.+.+++.|..|+++.+.++...-. .+ ...
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc 312 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC 312 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence 456777777764 333211111256667777777777765421100 00 123
Q ss_pred CCCCEEeCcCCC-CCccCCcccCCCCCCCeeecccCcCCccChhh---cCCCccCceeeeec
Q 041920 125 SNLKYLGLDQNN-LTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKE---IGSLRFLEVLELSS 182 (193)
Q Consensus 125 ~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~---~~~l~~L~~L~l~~ 182 (193)
++|..|||+++. ++...-..+.+++.|++|.++.|.. .+|+. +...|+|.+||+.+
T Consensus 313 p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 313 PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred CceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 455555555543 2222223344555566666655443 24442 34556666666543
No 72
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.0033 Score=49.28 Aligned_cols=86 Identities=30% Similarity=0.277 Sum_probs=60.8
Q ss_pred CCcEEEcccCccCcc-CchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccC-cCCcc-ChhhcCCCccCcee
Q 041920 102 NLQYLDLWNNSLSGS-IPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSN-NLNGI-IPKEIGSLRFLEVL 178 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~L 178 (193)
.++++||++..++.. +-.-+..+.+|+.|.+.++++.+.+-..+.+-.+|+.++++.+ .++.. ..--+..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588889988877632 2223456778888999999988777777777788888888864 35522 11235678888888
Q ss_pred eeeccccCc
Q 041920 179 ELSSNNLNG 187 (193)
Q Consensus 179 ~l~~N~l~g 187 (193)
+++.+.++.
T Consensus 266 NlsWc~l~~ 274 (419)
T KOG2120|consen 266 NLSWCFLFT 274 (419)
T ss_pred CchHhhccc
Confidence 888876653
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.33 E-value=0.15 Score=24.31 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=7.6
Q ss_pred CCCCeeecccCcCC
Q 041920 149 RNLVGLDLNSNNLN 162 (193)
Q Consensus 149 ~~L~~L~l~~n~l~ 162 (193)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.33 E-value=0.15 Score=24.31 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=7.6
Q ss_pred CCCCeeecccCcCC
Q 041920 149 RNLVGLDLNSNNLN 162 (193)
Q Consensus 149 ~~L~~L~l~~n~l~ 162 (193)
++|++|++++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555555
No 75
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.11 E-value=0.13 Score=24.86 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=9.5
Q ss_pred cCceeeeeccccCccCCC
Q 041920 174 FLEVLELSSNNLNGELPI 191 (193)
Q Consensus 174 ~L~~L~l~~N~l~g~iP~ 191 (193)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555666666655 4554
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.19 E-value=0.12 Score=24.20 Aligned_cols=13 Identities=46% Similarity=0.695 Sum_probs=5.4
Q ss_pred CCCeeecccCcCC
Q 041920 150 NLVGLDLNSNNLN 162 (193)
Q Consensus 150 ~L~~L~l~~n~l~ 162 (193)
+|++|++++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4445555555444
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=0.073 Score=39.49 Aligned_cols=82 Identities=22% Similarity=0.141 Sum_probs=49.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc-Cchhc-cCCCCCCEEeCcCCC-CCccCCcccCCCCCCC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS-IPSQI-GSLSNLKYLGLDQNN-LTGTIPKEIGSLRNLV 152 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~-~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~ 152 (193)
-.|+.+|-++..|..+--.- +.+++.++.|.+.++.--+. .-+.+ +..++|+.|++++|. |+...-..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 46888888888887554333 67777777777777653211 01111 134678888888654 5533334555667777
Q ss_pred eeeccc
Q 041920 153 GLDLNS 158 (193)
Q Consensus 153 ~L~l~~ 158 (193)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776643
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=0.086 Score=39.12 Aligned_cols=81 Identities=19% Similarity=0.158 Sum_probs=54.6
Q ss_pred CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCcc-CCcccC-CCCCCCeeecccCc-CCccChhhcCCCccCcee
Q 041920 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT-IPKEIG-SLRNLVGLDLNSNN-LNGIIPKEIGSLRFLEVL 178 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~~~-~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L 178 (193)
.++.+|-++..|...--+.+..++.++.|.+.++.--+. --+.++ -.++|+.|++++|. |+..--..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 467888888888655455677888888888877753211 001111 34799999999764 775544567778888887
Q ss_pred eeec
Q 041920 179 ELSS 182 (193)
Q Consensus 179 ~l~~ 182 (193)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7764
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.24 E-value=0.9 Score=21.91 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=10.2
Q ss_pred CCCCeeecccCcCC
Q 041920 149 RNLVGLDLNSNNLN 162 (193)
Q Consensus 149 ~~L~~L~l~~n~l~ 162 (193)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777775
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.72 E-value=1.5 Score=21.31 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=9.4
Q ss_pred CCCCeeecccCcCC
Q 041920 149 RNLVGLDLNSNNLN 162 (193)
Q Consensus 149 ~~L~~L~l~~n~l~ 162 (193)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777765
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=79.10 E-value=1.2 Score=37.07 Aligned_cols=60 Identities=23% Similarity=0.168 Sum_probs=25.9
Q ss_pred CCCCCEEeCcCCC-CCccCCcccC-CCCCCCeeecccCc-CCcc-ChhhcCCCccCceeeeecc
Q 041920 124 LSNLKYLGLDQNN-LTGTIPKEIG-SLRNLVGLDLNSNN-LNGI-IPKEIGSLRFLEVLELSSN 183 (193)
Q Consensus 124 l~~L~~L~ls~n~-l~~~~p~~~~-~l~~L~~L~l~~n~-l~~~-~p~~~~~l~~L~~L~l~~N 183 (193)
+++|+.++++... +++..-..+. .+++|++|.+.++. ++.. +-.....++.|+.|+++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3455555555555 3322111111 14556665554444 3321 1112234555666666544
No 82
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=78.49 E-value=1.1 Score=38.12 Aligned_cols=65 Identities=29% Similarity=0.300 Sum_probs=38.5
Q ss_pred CCCCCCcEEEcccCccCcc--CchhccCCCCCCEEeCcCC--CCCccCCcccC--CCCCCCeeecccCcCCcc
Q 041920 98 SCFPNLQYLDLWNNSLSGS--IPSQIGSLSNLKYLGLDQN--NLTGTIPKEIG--SLRNLVGLDLNSNNLNGI 164 (193)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n--~l~~~~p~~~~--~l~~L~~L~l~~n~l~~~ 164 (193)
.+++.+..++|++|++... +..--...|+|.+|+|++| .+... ..+. +...|++|.+.+|.+...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCccccc
Confidence 4567777788888877522 1111234577888888888 33311 1222 224678888888887643
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.40 E-value=2.9 Score=35.82 Aligned_cols=64 Identities=25% Similarity=0.242 Sum_probs=41.8
Q ss_pred CCCCCCEEeCcCCCCCcc--CCcccCCCCCCCeeecccC--cCCccChhhcCC--CccCceeeeeccccCcc
Q 041920 123 SLSNLKYLGLDQNNLTGT--IPKEIGSLRNLVGLDLNSN--NLNGIIPKEIGS--LRFLEVLELSSNNLNGE 188 (193)
Q Consensus 123 ~l~~L~~L~ls~n~l~~~--~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~--l~~L~~L~l~~N~l~g~ 188 (193)
+.+.+..++|++|++... +...-..-|+|..|+|++| .+.. ...+.+ ...|+.|-+.+|++..+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccc
Confidence 456788899999998732 1111223488999999999 4442 222333 34578888999988643
No 84
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=66.56 E-value=1.6 Score=36.25 Aligned_cols=105 Identities=23% Similarity=0.116 Sum_probs=60.8
Q ss_pred CCEEEEEcCCC--Ccc--cccCCCcCCCCCCCcEEEcccCc-cCccCchhcc-CCCCCCEEeCcCCC-CCccC-CcccCC
Q 041920 76 GSIILIDLQES--NIK--GELGRLNFSCFPNLQYLDLWNNS-LSGSIPSQIG-SLSNLKYLGLDQNN-LTGTI-PKEIGS 147 (193)
Q Consensus 76 ~~l~~L~l~~n--~l~--~~l~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~L~ls~n~-l~~~~-p~~~~~ 147 (193)
..++.++++++ .+. +...........+|+.++++++. ++...-..+. .+++|+.|.+.++. +++.. -.....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 56888888762 111 11111124456888999999887 5533222222 36789999977766 44322 123345
Q ss_pred CCCCCeeecccCcCCcc--ChhhcCCCccCceeee
Q 041920 148 LRNLVGLDLNSNNLNGI--IPKEIGSLRFLEVLEL 180 (193)
Q Consensus 148 l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l 180 (193)
++.|++|+++.+..... +.....++++|+.+.+
T Consensus 294 ~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 294 CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred cCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 78899999998775311 2233444666555443
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=61.14 E-value=0.44 Score=40.34 Aligned_cols=88 Identities=28% Similarity=0.313 Sum_probs=51.2
Q ss_pred CCCCCcEEEcccCccCccC----chhccCCCC-CCEEeCcCCCCCcc----CCcccCCC-CCCCeeecccCcCCcc----
Q 041920 99 CFPNLQYLDLWNNSLSGSI----PSQIGSLSN-LKYLGLDQNNLTGT----IPKEIGSL-RNLVGLDLNSNNLNGI---- 164 (193)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~----p~~~~~l~~-L~~L~ls~n~l~~~----~p~~~~~l-~~L~~L~l~~n~l~~~---- 164 (193)
...++++|.+.++.++... ...+...+. +..+++..|.+.+. +...+..+ ..+++++++.|.++..
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~ 281 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD 281 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence 3556677777777665211 112333334 55577777776532 12233334 5677888888887654
Q ss_pred ChhhcCCCccCceeeeeccccC
Q 041920 165 IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 165 ~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+...+..++.++.+.+++|.+.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccc
Confidence 3344556667788888877764
No 86
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=48.66 E-value=11 Score=23.39 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=10.7
Q ss_pred CcccccchhhHHHHHHH
Q 041920 1 MACAFSNTCRAVIVFIW 17 (193)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (193)
||+.+.|++.++-++++
T Consensus 1 MAvSvLrltivlGLlvL 17 (88)
T PF15144_consen 1 MAVSVLRLTIVLGLLVL 17 (88)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 77777776655554444
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.92 E-value=14 Score=37.85 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=27.4
Q ss_pred EcCCCCcccccCCCcCCCCCCCcEEEcccCccC
Q 041920 82 DLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS 114 (193)
Q Consensus 82 ~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~ 114 (193)
||++|+|. .++...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 57889998 788777889999999999998775
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=44.31 E-value=17 Score=17.01 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=7.2
Q ss_pred CCCCeeecccCc
Q 041920 149 RNLVGLDLNSNN 160 (193)
Q Consensus 149 ~~L~~L~l~~n~ 160 (193)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 456666666654
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=39.18 E-value=22 Score=36.68 Aligned_cols=32 Identities=28% Similarity=0.315 Sum_probs=27.5
Q ss_pred EcccCccCccCchhccCCCCCCEEeCcCCCCC
Q 041920 107 DLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLT 138 (193)
Q Consensus 107 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 138 (193)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899998666677889999999999999875
No 90
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=27.51 E-value=29 Score=20.96 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=3.6
Q ss_pred CCCCCcc
Q 041920 61 TSDHCKW 67 (193)
Q Consensus 61 ~~~~c~w 67 (193)
..++|.|
T Consensus 61 ~~~CC~~ 67 (75)
T PF02950_consen 61 NSECCSG 67 (75)
T ss_dssp TTCBSSS
T ss_pred CCCCCCC
Confidence 3445555
Done!