Query 041920
Match_columns 193
No_of_seqs 274 out of 3374
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 20:52:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 9.9E-27 3.4E-31 183.0 9.2 158 32-192 3-168 (313)
2 4eco_A Uncharacterized protein 99.9 4.2E-25 1.5E-29 188.7 7.7 156 34-191 29-293 (636)
3 4ecn_A Leucine-rich repeat pro 99.9 9E-24 3.1E-28 185.4 6.6 160 30-191 264-535 (876)
4 3rgz_A Protein brassinosteroid 99.9 2.1E-23 7.1E-28 181.6 8.8 160 28-190 5-195 (768)
5 3e6j_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 136.8 13.1 130 57-188 11-150 (229)
6 1w8a_A SLIT protein; signaling 99.8 8.8E-20 3E-24 133.7 10.9 129 62-190 5-143 (192)
7 4fcg_A Uncharacterized protein 99.8 7.1E-21 2.4E-25 150.5 4.2 158 29-191 21-200 (328)
8 2v9t_B SLIT homolog 2 protein 99.8 4.2E-19 1.4E-23 132.8 13.6 130 61-191 7-146 (220)
9 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-19 1.5E-23 132.7 11.8 114 77-190 33-146 (220)
10 2o6r_A Variable lymphocyte rec 99.8 6.2E-19 2.1E-23 127.4 11.6 128 62-190 4-141 (177)
11 2o6s_A Variable lymphocyte rec 99.8 1.6E-18 5.5E-23 128.2 13.4 125 62-187 4-138 (208)
12 3m19_A Variable lymphocyte rec 99.8 7.1E-18 2.4E-22 128.3 12.7 112 76-188 59-170 (251)
13 2wfh_A SLIT homolog 2 protein 99.8 7.6E-18 2.6E-22 123.6 11.5 122 64-187 9-140 (193)
14 2o6q_A Variable lymphocyte rec 99.8 1.8E-17 6E-22 127.4 13.8 109 77-186 38-146 (270)
15 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-17 3.5E-22 125.2 11.4 114 75-189 56-169 (220)
16 3rgz_A Protein brassinosteroid 99.7 4.4E-18 1.5E-22 148.1 8.7 111 81-192 613-723 (768)
17 1ogq_A PGIP-2, polygalacturona 99.7 2.3E-18 7.7E-23 135.2 4.7 116 76-192 76-193 (313)
18 2z80_A TOLL-like receptor 2, v 99.7 2.4E-17 8.3E-22 131.1 10.5 106 77-183 53-159 (353)
19 3m19_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 122.6 12.7 112 76-188 83-194 (251)
20 4g8a_A TOLL-like receptor 4; l 99.7 3.8E-17 1.3E-21 138.2 10.9 112 75-187 51-162 (635)
21 2o6s_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 118.0 12.2 115 75-190 51-165 (208)
22 4fcg_A Uncharacterized protein 99.7 2E-17 7E-22 130.6 8.4 115 76-193 183-297 (328)
23 2v9t_B SLIT homolog 2 protein 99.7 8.5E-17 2.9E-21 120.2 11.4 112 75-187 55-166 (220)
24 3g39_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 115.1 11.0 107 79-189 12-118 (170)
25 2z81_A CD282 antigen, TOLL-lik 99.7 4.8E-17 1.6E-21 136.1 9.9 114 76-190 26-140 (549)
26 1w8a_A SLIT protein; signaling 99.7 1.7E-16 5.9E-21 116.1 11.1 111 79-193 11-122 (192)
27 3e6j_A Variable lymphocyte rec 99.7 1.5E-16 5E-21 119.6 10.9 113 75-189 63-175 (229)
28 2xot_A Amphoterin-induced prot 99.7 1.7E-16 5.8E-21 126.8 11.8 109 77-186 40-149 (361)
29 3rfs_A Internalin B, repeat mo 99.7 2.9E-16 1E-20 120.7 12.7 111 76-187 85-195 (272)
30 3rfs_A Internalin B, repeat mo 99.7 3.2E-16 1.1E-20 120.6 12.5 116 75-191 108-223 (272)
31 3oja_B Anopheles plasmodium-re 99.7 6.8E-17 2.3E-21 137.0 9.2 108 78-186 77-184 (597)
32 2je0_A Acidic leucine-rich nuc 99.7 5.5E-17 1.9E-21 113.8 7.2 110 76-188 17-128 (149)
33 2r9u_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 112.0 12.0 106 79-188 15-120 (174)
34 3zyi_A Leucine-rich repeat-con 99.7 2.7E-16 9.1E-21 129.1 11.9 108 76-184 75-182 (452)
35 3v47_A TOLL-like receptor 5B a 99.7 4.1E-16 1.4E-20 127.6 11.8 115 76-191 299-413 (455)
36 1p9a_G Platelet glycoprotein I 99.7 7.1E-16 2.4E-20 119.8 12.4 114 76-192 77-190 (290)
37 1ozn_A Reticulon 4 receptor; N 99.7 9.5E-16 3.2E-20 118.4 12.4 109 77-186 57-166 (285)
38 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.7E-21 112.8 8.1 113 76-192 49-165 (168)
39 3vq2_A TLR4, TOLL-like recepto 99.7 4.6E-16 1.6E-20 131.6 11.3 113 77-190 57-170 (606)
40 2z66_A Variable lymphocyte rec 99.7 5.7E-16 2E-20 120.7 10.7 113 77-190 127-240 (306)
41 3zyj_A Leucine-rich repeat-con 99.7 2E-16 6.7E-21 129.4 8.2 108 76-184 64-171 (440)
42 2o6q_A Variable lymphocyte rec 99.7 1.6E-15 5.5E-20 116.4 12.8 109 77-186 86-194 (270)
43 2wfh_A SLIT homolog 2 protein 99.6 2.3E-15 7.9E-20 110.3 12.5 107 79-191 13-119 (193)
44 3t6q_A CD180 antigen; protein- 99.6 9.7E-16 3.3E-20 129.7 12.0 116 75-191 32-148 (606)
45 4b8c_D Glucose-repressible alc 99.6 4.8E-17 1.7E-21 140.8 4.1 111 76-191 224-334 (727)
46 2z66_A Variable lymphocyte rec 99.6 3.1E-16 1E-20 122.3 8.2 124 62-187 4-140 (306)
47 2z62_A TOLL-like receptor 4, v 99.6 1.1E-15 3.7E-20 117.6 11.1 111 76-187 52-163 (276)
48 3v47_A TOLL-like receptor 5B a 99.6 9E-16 3.1E-20 125.6 11.2 114 76-191 275-388 (455)
49 2id5_A Lingo-1, leucine rich r 99.6 1.2E-15 4.3E-20 125.7 11.9 114 76-190 32-145 (477)
50 3o6n_A APL1; leucine-rich repe 99.6 3.5E-16 1.2E-20 125.9 8.4 108 77-186 70-178 (390)
51 4g8a_A TOLL-like receptor 4; l 99.6 7.4E-16 2.5E-20 130.3 10.6 115 76-191 76-191 (635)
52 1ozn_A Reticulon 4 receptor; N 99.6 2E-15 6.8E-20 116.6 11.8 109 77-186 106-214 (285)
53 3vq2_A TLR4, TOLL-like recepto 99.6 1.6E-15 5.6E-20 128.3 12.2 117 75-192 31-148 (606)
54 2xot_A Amphoterin-induced prot 99.6 1.9E-15 6.6E-20 120.7 11.5 114 75-190 63-179 (361)
55 3j0a_A TOLL-like receptor 5; m 99.6 1.4E-15 4.9E-20 133.6 11.5 123 64-188 13-138 (844)
56 2z62_A TOLL-like receptor 4, v 99.6 1.5E-15 5.1E-20 116.8 10.1 115 76-191 28-143 (276)
57 2ft3_A Biglycan; proteoglycan, 99.6 5.3E-15 1.8E-19 116.6 13.1 120 63-186 31-160 (332)
58 2ell_A Acidic leucine-rich nuc 99.6 1.5E-15 5.2E-20 108.5 9.0 110 76-188 24-135 (168)
59 4eco_A Uncharacterized protein 99.6 2.8E-16 9.7E-21 134.2 5.8 114 75-190 205-347 (636)
60 2xwt_C Thyrotropin receptor; s 99.6 2.9E-15 1E-19 112.9 9.7 108 76-186 31-144 (239)
61 1ziw_A TOLL-like receptor 3; i 99.6 3E-15 1E-19 128.3 10.9 116 75-191 24-139 (680)
62 1dce_A Protein (RAB geranylger 99.6 2.1E-15 7.2E-20 127.2 9.7 108 77-190 442-550 (567)
63 2o6r_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 104.1 12.7 109 78-191 9-117 (177)
64 1p9a_G Platelet glycoprotein I 99.6 7E-15 2.4E-19 114.2 11.5 111 76-191 55-165 (290)
65 2z63_A TOLL-like receptor 4, v 99.6 4.3E-15 1.5E-19 124.6 11.0 112 76-188 52-164 (570)
66 2z63_A TOLL-like receptor 4, v 99.6 4.1E-15 1.4E-19 124.7 10.6 115 76-191 421-536 (570)
67 3oja_A Leucine-rich immune mol 99.6 3.5E-15 1.2E-19 123.8 9.9 124 64-192 108-232 (487)
68 4ezg_A Putative uncharacterize 99.6 4.5E-15 1.5E-19 108.8 9.3 105 77-186 89-194 (197)
69 1xku_A Decorin; proteoglycan, 99.6 1.8E-14 6.3E-19 113.4 13.0 121 62-186 28-158 (330)
70 4ezg_A Putative uncharacterize 99.6 5.1E-15 1.8E-19 108.5 9.1 107 76-187 66-173 (197)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7.2E-15 2.5E-19 123.6 11.0 118 66-187 42-160 (562)
72 2z80_A TOLL-like receptor 2, v 99.6 1.1E-14 3.6E-19 115.8 10.6 117 75-193 75-194 (353)
73 2z81_A CD282 antigen, TOLL-lik 99.6 8.7E-15 3E-19 122.4 10.6 118 75-193 49-168 (549)
74 2ifg_A High affinity nerve gro 99.6 2E-14 6.7E-19 114.0 12.1 109 64-187 7-117 (347)
75 2z7x_B TOLL-like receptor 1, v 99.6 5.3E-15 1.8E-19 123.1 8.9 109 75-187 20-129 (520)
76 3j0a_A TOLL-like receptor 5; m 99.6 9.3E-15 3.2E-19 128.4 10.6 117 75-191 47-166 (844)
77 3oja_B Anopheles plasmodium-re 99.6 1.4E-14 4.7E-19 122.9 11.3 142 50-192 4-166 (597)
78 1a9n_A U2A', U2A'; complex (nu 99.6 9.3E-15 3.2E-19 105.3 8.7 105 76-186 19-126 (176)
79 3o6n_A APL1; leucine-rich repe 99.6 2.3E-14 7.8E-19 115.3 11.6 115 76-191 45-159 (390)
80 2id5_A Lingo-1, leucine rich r 99.6 2.7E-14 9.2E-19 117.7 11.3 110 76-186 56-165 (477)
81 2je0_A Acidic leucine-rich nuc 99.5 6.2E-15 2.1E-19 103.3 6.0 105 75-182 41-149 (149)
82 1wwl_A Monocyte differentiatio 99.5 5.1E-15 1.8E-19 115.9 6.0 111 77-189 122-244 (312)
83 3t6q_A CD180 antigen; protein- 99.5 1.6E-14 5.5E-19 122.2 9.3 65 121-186 472-536 (606)
84 3zyj_A Leucine-rich repeat-con 99.5 3E-14 1E-18 116.5 10.5 110 76-187 160-269 (440)
85 3zyi_A Leucine-rich repeat-con 99.5 3.8E-14 1.3E-18 116.3 10.9 110 76-187 171-280 (452)
86 2z7x_B TOLL-like receptor 1, v 99.5 3.2E-14 1.1E-18 118.3 10.0 114 75-191 323-461 (520)
87 1xku_A Decorin; proteoglycan, 99.5 6.6E-14 2.3E-18 110.2 11.1 85 101-186 192-276 (330)
88 2xwt_C Thyrotropin receptor; s 99.5 1.7E-14 5.8E-19 108.7 7.3 113 75-191 54-173 (239)
89 1wwl_A Monocyte differentiatio 99.5 1.4E-14 4.9E-19 113.4 7.1 115 76-192 149-271 (312)
90 4ecn_A Leucine-rich repeat pro 99.5 6.6E-15 2.3E-19 129.4 5.5 112 76-190 448-589 (876)
91 1ziw_A TOLL-like receptor 3; i 99.5 2.7E-14 9.4E-19 122.3 8.9 113 77-190 74-188 (680)
92 3o53_A Protein LRIM1, AGAP0063 99.5 4.9E-14 1.7E-18 110.5 9.5 118 69-191 113-231 (317)
93 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 9.5E-14 3.2E-18 116.7 11.1 114 76-192 353-491 (562)
94 3g39_A Variable lymphocyte rec 99.5 1.5E-13 5.1E-18 98.5 10.2 101 63-164 7-117 (170)
95 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 9.8E-19 102.7 5.9 106 76-186 42-153 (176)
96 4glp_A Monocyte differentiatio 99.5 2E-14 6.9E-19 112.3 5.0 109 76-186 145-264 (310)
97 2ft3_A Biglycan; proteoglycan, 99.5 1.5E-13 5.2E-18 108.3 8.3 109 76-186 193-307 (332)
98 4b8c_D Glucose-repressible alc 99.5 9E-14 3.1E-18 120.4 7.6 153 36-193 133-312 (727)
99 3cvr_A Invasion plasmid antige 99.4 1.6E-13 5.6E-18 115.6 7.6 109 61-186 39-153 (571)
100 4glp_A Monocyte differentiatio 99.4 1.5E-13 5.2E-18 107.3 6.9 92 100-192 144-243 (310)
101 1h6t_A Internalin B; cell adhe 99.4 9.7E-13 3.3E-17 102.1 10.2 101 77-186 91-191 (291)
102 3o53_A Protein LRIM1, AGAP0063 99.4 4.3E-13 1.5E-17 105.2 8.2 107 76-186 144-250 (317)
103 1xeu_A Internalin C; cellular 99.4 1.3E-12 4.5E-17 100.0 10.4 103 76-188 63-165 (263)
104 1h6u_A Internalin H; cell adhe 99.4 8.3E-13 2.8E-17 103.2 9.3 102 76-186 85-186 (308)
105 4fmz_A Internalin; leucine ric 99.4 8.8E-13 3E-17 104.2 9.5 108 76-190 221-328 (347)
106 3oja_A Leucine-rich immune mol 99.4 2.8E-13 9.7E-18 112.3 6.6 107 75-186 143-250 (487)
107 1h6t_A Internalin B; cell adhe 99.4 1.4E-12 4.9E-17 101.2 9.9 104 75-187 111-214 (291)
108 1h6u_A Internalin H; cell adhe 99.4 1.5E-12 5.2E-17 101.7 9.7 102 76-186 63-164 (308)
109 4fmz_A Internalin; leucine ric 99.4 6.8E-13 2.3E-17 104.8 7.6 105 75-186 242-346 (347)
110 2r9u_A Variable lymphocyte rec 99.4 1.8E-12 6.2E-17 93.3 9.2 88 76-164 33-120 (174)
111 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.9E-17 104.2 8.4 116 64-180 8-135 (350)
112 1xeu_A Internalin C; cellular 99.4 2.9E-12 9.9E-17 98.0 10.2 104 75-188 84-187 (263)
113 1dce_A Protein (RAB geranylger 99.4 1E-12 3.4E-17 110.9 8.2 101 76-180 463-567 (567)
114 1m9s_A Internalin B; cell inva 99.4 3.4E-12 1.2E-16 108.4 10.9 101 77-186 88-188 (605)
115 3cvr_A Invasion plasmid antige 99.4 6E-13 2.1E-17 112.2 5.8 80 102-190 161-247 (571)
116 1m9s_A Internalin B; cell inva 99.3 4E-12 1.4E-16 107.9 10.7 105 75-188 108-212 (605)
117 1o6v_A Internalin A; bacterial 99.3 4.7E-12 1.6E-16 104.2 9.5 102 77-187 288-389 (466)
118 1o6v_A Internalin A; bacterial 99.3 5.7E-12 2E-16 103.6 9.6 105 77-190 266-370 (466)
119 1ds9_A Outer arm dynein; leuci 99.3 4.5E-15 1.5E-19 108.9 -8.3 109 76-190 48-157 (198)
120 2ast_B S-phase kinase-associat 99.3 8.8E-13 3E-17 103.7 4.1 108 77-186 71-182 (336)
121 3bz5_A Internalin-J, INLJ; leu 99.3 1.2E-11 4E-16 101.8 10.4 101 76-189 64-164 (457)
122 2ifg_A High affinity nerve gro 99.3 8E-12 2.7E-16 98.9 9.0 85 104-191 11-97 (347)
123 3bz5_A Internalin-J, INLJ; leu 99.3 3.7E-11 1.3E-15 98.8 12.9 83 97-188 166-248 (457)
124 2ca6_A RAN GTPase-activating p 99.3 7E-13 2.4E-17 106.5 1.5 113 76-189 187-319 (386)
125 1ds9_A Outer arm dynein; leuci 99.3 1.4E-14 4.6E-19 106.3 -8.0 105 77-187 19-129 (198)
126 1jl5_A Outer protein YOPM; leu 99.3 8.2E-12 2.8E-16 102.6 7.5 84 101-192 317-417 (454)
127 3g06_A SSPH2 (leucine-rich rep 99.3 1.2E-11 4E-16 105.4 8.6 82 101-191 221-302 (622)
128 4ay9_X Follicle-stimulating ho 99.3 2.2E-11 7.7E-16 96.6 9.6 105 80-188 13-119 (350)
129 3g06_A SSPH2 (leucine-rich rep 99.2 4.8E-12 1.7E-16 107.7 5.5 115 57-186 14-154 (622)
130 2ast_B S-phase kinase-associat 99.2 3.7E-13 1.3E-17 105.8 -1.3 107 76-183 93-205 (336)
131 1jl5_A Outer protein YOPM; leu 99.2 1.2E-10 4.1E-15 95.7 11.3 79 101-187 131-209 (454)
132 3goz_A Leucine-rich repeat-con 99.2 3.5E-12 1.2E-16 101.7 1.6 111 77-188 52-182 (362)
133 2ca6_A RAN GTPase-activating p 99.2 3.2E-12 1.1E-16 102.6 1.2 112 76-187 159-288 (386)
134 3goz_A Leucine-rich repeat-con 99.2 6.4E-12 2.2E-16 100.2 2.4 112 75-187 21-152 (362)
135 1z7x_W Ribonuclease inhibitor; 99.0 9.9E-12 3.4E-16 101.6 -2.1 111 77-187 285-412 (461)
136 1z7x_W Ribonuclease inhibitor; 98.9 5.7E-11 2E-15 97.1 -0.9 111 76-187 28-156 (461)
137 3un9_A NLR family member X1; l 98.9 1.8E-10 6.3E-15 92.3 1.8 110 77-186 127-252 (372)
138 3un9_A NLR family member X1; l 98.9 1.7E-10 5.9E-15 92.5 -0.4 112 76-187 101-225 (372)
139 3sb4_A Hypothetical leucine ri 98.9 6.6E-09 2.2E-13 81.6 8.3 102 76-180 226-328 (329)
140 3rw6_A Nuclear RNA export fact 98.8 7.5E-09 2.6E-13 79.2 5.1 64 100-165 169-236 (267)
141 1io0_A Tropomodulin; LRR prote 98.7 2.4E-09 8.2E-14 77.6 1.3 111 75-186 35-164 (185)
142 3rw6_A Nuclear RNA export fact 98.7 8.2E-10 2.8E-14 84.5 -1.4 68 122-191 167-238 (267)
143 3ogk_B Coronatine-insensitive 98.6 3.3E-09 1.1E-13 89.2 -0.1 92 97-188 432-528 (592)
144 3sb4_A Hypothetical leucine ri 98.6 2.2E-07 7.5E-12 72.9 10.2 85 100-186 225-310 (329)
145 3ogk_B Coronatine-insensitive 98.4 2.4E-07 8.3E-12 77.8 4.4 62 76-138 164-233 (592)
146 2p1m_B Transport inhibitor res 98.3 3.5E-08 1.2E-12 82.9 -1.8 88 98-186 429-519 (594)
147 1io0_A Tropomodulin; LRR prote 98.3 2.5E-07 8.5E-12 66.8 2.5 90 97-186 32-136 (185)
148 3e4g_A ATP synthase subunit S, 98.3 4.2E-07 1.4E-11 65.0 3.2 84 76-160 61-150 (176)
149 2p1m_B Transport inhibitor res 98.2 6E-08 2.1E-12 81.5 -2.7 110 77-187 373-495 (594)
150 4fdw_A Leucine rich hypothetic 98.2 9.1E-06 3.1E-10 65.6 9.5 105 77-186 249-358 (401)
151 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.5E-11 63.1 2.8 84 101-184 61-150 (176)
152 2ra8_A Uncharacterized protein 98.1 2.8E-07 9.4E-12 73.6 -1.2 35 76-114 172-206 (362)
153 2ra8_A Uncharacterized protein 97.9 1.1E-05 3.8E-10 64.3 4.4 110 76-186 193-320 (362)
154 4fdw_A Leucine rich hypothetic 97.8 0.00017 5.7E-09 58.2 9.7 15 120-134 221-235 (401)
155 3rfe_A Platelet glycoprotein I 97.6 0.00018 6.2E-09 48.7 6.1 56 105-162 12-68 (130)
156 1pgv_A TMD-1, tropomodulin TMD 97.4 5.7E-05 2E-09 54.9 1.6 110 75-185 40-169 (197)
157 4gt6_A Cell surface protein; l 97.3 0.0026 8.8E-08 50.8 10.6 102 78-184 267-368 (394)
158 4h09_A Hypothetical leucine ri 97.2 0.0013 4.6E-08 52.0 8.6 102 77-182 241-342 (379)
159 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00014 4.9E-09 52.8 2.0 87 97-183 37-136 (197)
160 3rfe_A Platelet glycoprotein I 97.1 0.001 3.4E-08 45.0 6.0 56 80-138 12-68 (130)
161 4fs7_A Uncharacterized protein 97.0 0.0025 8.6E-08 50.9 8.5 87 94-183 290-376 (394)
162 4fs7_A Uncharacterized protein 97.0 0.0018 6.3E-08 51.7 7.6 97 76-178 297-393 (394)
163 4gt6_A Cell surface protein; l 97.0 0.0018 6.1E-08 51.7 7.1 103 76-185 288-390 (394)
164 4h09_A Hypothetical leucine ri 96.2 0.023 7.9E-07 44.8 8.8 90 92-183 231-320 (379)
165 2lz0_A Uncharacterized protein 54.8 36 0.0012 21.1 6.3 47 87-135 7-53 (100)
166 2lz0_A Uncharacterized protein 52.6 39 0.0013 21.0 6.0 48 111-159 6-53 (100)
167 3ox7_P MH027; urokinase-type p 27.6 15 0.00051 15.8 0.2 10 62-71 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=9.9e-27 Score=182.97 Aligned_cols=158 Identities=28% Similarity=0.485 Sum_probs=138.9
Q ss_pred cccccccccHHHHHHHhcCCCCCCCCCCCCCCCCc--ccceeeCCC---CCEEEEEcCCCCccc--ccCCCcCCCCCCCc
Q 041920 32 NISIHVAASETERQALLNSGWWKDRIPHNTSDHCK--WVGIICDYE---GSIILIDLQESNIKG--ELGRLNFSCFPNLQ 104 (193)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~--w~gv~c~~~---~~l~~L~l~~n~l~~--~l~~~~~~~l~~L~ 104 (193)
+.+.+..|+.++|+++.++. ...+|..+.++|. |.||.|+.. ++|+.|+++++++.+ .+|.. +.++++|+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~ 79 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLN 79 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG-GGGCTTCS
T ss_pred CCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChh-HhCCCCCC
Confidence 44566788899999886553 4667877788998 999999864 799999999999998 78876 99999999
Q ss_pred EEEccc-CccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeecc
Q 041920 105 YLDLWN-NSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSN 183 (193)
Q Consensus 105 ~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N 183 (193)
+|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 9998889999999999999999999999889999999999999999999999889999999999999999999
Q ss_pred ccCccCCCC
Q 041920 184 NLNGELPIN 192 (193)
Q Consensus 184 ~l~g~iP~~ 192 (193)
.++|.+|..
T Consensus 160 ~l~~~~p~~ 168 (313)
T 1ogq_A 160 RISGAIPDS 168 (313)
T ss_dssp CCEEECCGG
T ss_pred cccCcCCHH
Confidence 998888864
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=4.2e-25 Score=188.66 Aligned_cols=156 Identities=13% Similarity=0.237 Sum_probs=139.8
Q ss_pred cccccccHHHHHHHhcCCCCCCC-------CCCCCCCCCcc---cceeeCCCCCEEEEEcCCCCcccccCCCcCCCCCCC
Q 041920 34 SIHVAASETERQALLNSGWWKDR-------IPHNTSDHCKW---VGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNL 103 (193)
Q Consensus 34 ~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~c~w---~gv~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L 103 (193)
..+..|+.+.++++.+..|.... .|..+.++|.| .||.|+..++|+.|+++++++.|.+|+. ++++++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~-l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDA-IGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGG-GGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChH-HhcCccc
Confidence 34668888888888888876444 79989999999 9999988899999999999999999987 9999999
Q ss_pred cEEEcccCc-----------------------------------------------------------------------
Q 041920 104 QYLDLWNNS----------------------------------------------------------------------- 112 (193)
Q Consensus 104 ~~L~l~~n~----------------------------------------------------------------------- 112 (193)
++|++++|.
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 999999884
Q ss_pred -------cCccCchhccCCCCCCEEeCcCCCCCcc-----------------CCcccC--CCCCCCeeecccCcCCccCh
Q 041920 113 -------LSGSIPSQIGSLSNLKYLGLDQNNLTGT-----------------IPKEIG--SLRNLVGLDLNSNNLNGIIP 166 (193)
Q Consensus 113 -------l~~~~p~~~~~l~~L~~L~ls~n~l~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~~~~p 166 (193)
+++ +|..++++++|++|++++|.+++. +|..++ .+++|++|++++|.+.+.+|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 334 778899999999999999999985 999999 99999999999999999999
Q ss_pred hhcCCCccCceeeeeccc-cCc-cCCC
Q 041920 167 KEIGSLRFLEVLELSSNN-LNG-ELPI 191 (193)
Q Consensus 167 ~~~~~l~~L~~L~l~~N~-l~g-~iP~ 191 (193)
..+.++++|++|++++|. ++| .+|.
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred HHHhcCCCCCEEECcCCCCCccccchH
Confidence 999999999999999998 988 7764
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=9e-24 Score=185.36 Aligned_cols=160 Identities=18% Similarity=0.234 Sum_probs=136.6
Q ss_pred cccccccccccHHHHHHHhcCCCCCCCCCCCCCCC--Ccc------------cceeeCCCCCEEEEEcCCCCcccccCCC
Q 041920 30 ATNISIHVAASETERQALLNSGWWKDRIPHNTSDH--CKW------------VGIICDYEGSIILIDLQESNIKGELGRL 95 (193)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--c~w------------~gv~c~~~~~l~~L~l~~n~l~~~l~~~ 95 (193)
++....+..|+.++++++.++.|.....|. +.++ |.| .||.|+..++|+.|+|+++++.|.+|+.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~ 342 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGKNWRYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDA 342 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGG
T ss_pred cccchHHHHHHHHHHHHcCCCCCCcCCCcc-cccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchH
Confidence 334445778899999998777655444443 3455 999 9999998899999999999999999987
Q ss_pred cCCCCCCCcEEEc-ccCccCcc----------------------------------------------------------
Q 041920 96 NFSCFPNLQYLDL-WNNSLSGS---------------------------------------------------------- 116 (193)
Q Consensus 96 ~~~~l~~L~~L~l-~~n~l~~~---------------------------------------------------------- 116 (193)
++++++|++|+| ++|.++|.
T Consensus 343 -l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 343 -IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp -GGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred -HhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 999999999999 77755433
Q ss_pred ------------------CchhccCCCCCCEEeCcCCCCCc-----------------cCCcccC--CCCCCCeeecccC
Q 041920 117 ------------------IPSQIGSLSNLKYLGLDQNNLTG-----------------TIPKEIG--SLRNLVGLDLNSN 159 (193)
Q Consensus 117 ------------------~p~~~~~l~~L~~L~ls~n~l~~-----------------~~p~~~~--~l~~L~~L~l~~n 159 (193)
+|..+.++++|+.|++++|.+++ .+|..++ .+++|++|++++|
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 77789999999999999999998 3899988 9999999999999
Q ss_pred cCCccChhhcCCCccCceeeeeccc-cCc-cCCC
Q 041920 160 NLNGIIPKEIGSLRFLEVLELSSNN-LNG-ELPI 191 (193)
Q Consensus 160 ~l~~~~p~~~~~l~~L~~L~l~~N~-l~g-~iP~ 191 (193)
.+.+.+|..+.++++|+.|++++|. ++| .+|.
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~ 535 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence 9999999999999999999999998 888 6764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=2.1e-23 Score=181.60 Aligned_cols=160 Identities=24% Similarity=0.339 Sum_probs=126.0
Q ss_pred hccccccccccccHHHHHHHhcCCCCCCCCCCCCCCCCcccceeeCCCCCEEEEEcCCCCcccc---cCC----------
Q 041920 28 ASATNISIHVAASETERQALLNSGWWKDRIPHNTSDHCKWVGIICDYEGSIILIDLQESNIKGE---LGR---------- 94 (193)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~c~w~gv~c~~~~~l~~L~l~~n~l~~~---l~~---------- 94 (193)
++++..+.+..|+.++|+++.++. ..++|..+.+||.|.||.|+ .++|+.|+++++++.|. +++
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 344445567788999998887655 67889878899999999999 68999999999998876 432
Q ss_pred ------------CcCCCCCCCcEEEcccCccCccCch--hccCCCCCCEEeCcCCCCCccCCccc-CCCCCCCeeecccC
Q 041920 95 ------------LNFSCFPNLQYLDLWNNSLSGSIPS--QIGSLSNLKYLGLDQNNLTGTIPKEI-GSLRNLVGLDLNSN 159 (193)
Q Consensus 95 ------------~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~l~~n 159 (193)
..+..+++|++|++++|.++|.+|. .++.+++|++|++++|.+.+..|..+ ..+++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 2378889999999999999888887 88999999999999999888777765 77888999999988
Q ss_pred cCCccChhh---cCCCccCceeeeeccccCccCC
Q 041920 160 NLNGIIPKE---IGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 160 ~l~~~~p~~---~~~l~~L~~L~l~~N~l~g~iP 190 (193)
++++..|.. +.++++|++|++++|.++|.+|
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 195 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence 888777765 5666666666666666555443
No 5
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=1.1e-19 Score=136.83 Aligned_cols=130 Identities=25% Similarity=0.271 Sum_probs=110.2
Q ss_pred CCCCCCCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCC
Q 041920 57 IPHNTSDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSN 126 (193)
Q Consensus 57 ~~~~~~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 126 (193)
.|..+...|+|.++.|.. ..+++.|++++|.+.+..+.. |..+++|++|++++|.++...+..|..+++
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 344578899999999964 247899999999999655554 899999999999999998655566789999
Q ss_pred CCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 127 LKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 127 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++.
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 999999999999666666788999999999999998 7788888999999999999998843
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.82 E-value=8.8e-20 Score=133.74 Aligned_cols=129 Identities=24% Similarity=0.306 Sum_probs=112.9
Q ss_pred CCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEe
Q 041920 62 SDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLG 131 (193)
Q Consensus 62 ~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 131 (193)
...|.|..+.|.. ..+++.|++++|.+.+..+...+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus 5 ~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 5 MCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 3456777777753 237899999999998544433488999999999999999988888999999999999
Q ss_pred CcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 132 LDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 132 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999998888889999999999999999999999999999999999999999987654
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=7.1e-21 Score=150.53 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=111.7
Q ss_pred ccccccccccccHHHHHHHhcCCCCCCCCC----CCCCCCCcccceeeCC---------CCCEEEEEcCCCCcccccCCC
Q 041920 29 SATNISIHVAASETERQALLNSGWWKDRIP----HNTSDHCKWVGIICDY---------EGSIILIDLQESNIKGELGRL 95 (193)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~c~w~gv~c~~---------~~~l~~L~l~~n~l~~~l~~~ 95 (193)
..+....+..++.+++..+..........| ....++|.|.|+.|+. ..+++.|++++|++. .+|..
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 334445566788888887744332223456 3467899999999952 367888888888887 77776
Q ss_pred cCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCC----
Q 041920 96 NFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGS---- 171 (193)
Q Consensus 96 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~---- 171 (193)
+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..
T Consensus 100 -l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 100 -AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp -GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred -hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence 777888888888888887 67777778888888888888887 67777777777777777777666666655433
Q ss_pred -----CccCceeeeeccccCccCCC
Q 041920 172 -----LRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 172 -----l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++|++++|.++ .+|.
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~ 200 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPA 200 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCG
T ss_pred hhhccCCCCCEEECcCCCcC-cchH
Confidence 666666666666665 5554
No 8
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=4.2e-19 Score=132.81 Aligned_cols=130 Identities=27% Similarity=0.267 Sum_probs=108.9
Q ss_pred CCCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEE
Q 041920 61 TSDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYL 130 (193)
Q Consensus 61 ~~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 130 (193)
....|.|..+.|.. ...++.|++++|++. .++...|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 34457788888853 247899999999998 5555459999999999999999998878889999999999
Q ss_pred eCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 131 GLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 131 ~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
++++|.++...+..+..+++|++|++++|++++..|..|..+++|++|++++|.+++..|.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 9999999955455678899999999999999988888899999999999999999854443
No 9
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.5e-19 Score=132.66 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=60.6
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.++.|++++|.+.+..+...|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555666665553333333455555555555555555444444555555555555555555444444555555555555
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
++|++++..|..|..+++|++|++++|.+++..|
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECH
Confidence 5555555445555555555555555555554434
No 10
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.80 E-value=6.2e-19 Score=127.37 Aligned_cols=128 Identities=22% Similarity=0.278 Sum_probs=109.4
Q ss_pred CCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEe
Q 041920 62 SDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLG 131 (193)
Q Consensus 62 ~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 131 (193)
...|.|.++.|.. ..+++.|++++|++. .++...+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 4 ~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 3457899998864 247899999999998 55555589999999999999999966666689999999999
Q ss_pred CcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 132 LDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 132 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 83 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 83 LHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999997666678899999999999999997666667889999999999999987654
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.6e-18 Score=128.23 Aligned_cols=125 Identities=26% Similarity=0.313 Sum_probs=96.4
Q ss_pred CCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEe
Q 041920 62 SDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLG 131 (193)
Q Consensus 62 ~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 131 (193)
...|.|.++.|.. ..+++.|++++|++. .++...+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 3457888888864 236888999999888 45554478888888899888888865555577888888888
Q ss_pred CcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 132 LDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 132 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|.+++..+..+..+++|++|++++|++++..+..+.++++|++|++++|.+++
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence 88888885555567788888888888888886666667778888888888888774
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=7.1e-18 Score=128.29 Aligned_cols=112 Identities=26% Similarity=0.286 Sum_probs=67.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 59 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 59 TKLTWLNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCccCHh-HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 3455666666665533322 255666666666666666644444556666666666666666644444456666677777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
+++|++++..+..+..+++|++|++++|.+++.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 777776655554566677777777777776643
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=123.56 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=106.1
Q ss_pred CCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCc
Q 041920 64 HCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLD 133 (193)
Q Consensus 64 ~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls 133 (193)
.|.+..+.|.. ...++.|++++|.+. .+|.. |..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 45556666643 347899999999998 78865 9999999999999999998777889999999999999
Q ss_pred CCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 134 QNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 134 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+|.+++..|..+..+++|++|++++|+++...+..|..+++|+.|++++|++.+
T Consensus 87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999997777889999999999999999996666678899999999999999864
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.8e-17 Score=127.42 Aligned_cols=109 Identities=28% Similarity=0.330 Sum_probs=65.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.++.|++++|++. .++...|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 4666777777666 344333666777777777777766444444566666666666666666444444555666666666
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|.+++..|..+..+++|++|++++|.++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 666665544444555555555555555554
No 15
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=125.23 Aligned_cols=114 Identities=21% Similarity=0.227 Sum_probs=103.9
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.++ .+++..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 56 l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 56 LPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 367999999999999 4555449999999999999999998778789999999999999999998888999999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGEL 189 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 189 (193)
++++|++++..|..|..+++|+.|++++|++++..
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999999888999999999999999999998654
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.73 E-value=4.4e-18 Score=148.13 Aligned_cols=111 Identities=39% Similarity=0.640 Sum_probs=103.7
Q ss_pred EEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCc
Q 041920 81 IDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNN 160 (193)
Q Consensus 81 L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~ 160 (193)
+++..+.+.|.+|.. +..+++|++|++++|.++|.+|..++.++.|+.|++++|.++|.+|..++.+++|++||+++|+
T Consensus 613 ~~l~~~~~~g~~~~~-~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 613 CNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp SCTTSCEEEEECCCS-CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccceecccCchh-hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 345567777888877 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 161 LNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 161 l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
++|.+|..+..+++|++|++++|+++|.||..
T Consensus 692 l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999999999999999999999999999963
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=2.3e-18 Score=135.22 Aligned_cols=116 Identities=29% Similarity=0.564 Sum_probs=105.3
Q ss_pred CCEEEEEcCC-CCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQE-SNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~-n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++.|++++ |.+.+.+|.. +.++++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 5788999995 8898888877 9999999999999999998899889999999999999999998899999999999999
Q ss_pred ecccCcCCccChhhcCCCc-cCceeeeeccccCccCCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLR-FLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~-~L~~L~l~~N~l~g~iP~~ 192 (193)
++++|++++.+|..+..++ +|++|++++|.++|.+|..
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 9999999988999999888 8999999999998888764
No 18
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=131.11 Aligned_cols=106 Identities=23% Similarity=0.236 Sum_probs=53.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|++. .++...+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 53 ~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 4555666655555 333322555555555555555555444444555555555555555555322222455555555555
Q ss_pred ccCcCCccCh-hhcCCCccCceeeeecc
Q 041920 157 NSNNLNGIIP-KEIGSLRFLEVLELSSN 183 (193)
Q Consensus 157 ~~n~l~~~~p-~~~~~l~~L~~L~l~~N 183 (193)
++|++++..+ ..+.++++|++|++++|
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n 159 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNM 159 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCC
Confidence 5555542211 13444555555555554
No 19
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=7.7e-17 Score=122.56 Aligned_cols=112 Identities=23% Similarity=0.270 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++...|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 83 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 83 TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 35566666666665 33333355666666666666666544444455566666666666666544344555566666666
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
+++|++++..+..+..+++|+.|++++|++++.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 666666654444555566666666666666543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.71 E-value=3.8e-17 Score=138.25 Aligned_cols=112 Identities=28% Similarity=0.298 Sum_probs=98.1
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
+..++.|++++|.|+ .+++..|.++++|++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus 51 p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 457899999999998 6666559999999999999999997777789999999999999999996656778999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
++++|++++..+..|+++++|++|++++|.+++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~ 162 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQS 162 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCcccc
Confidence 999999997666678899999999999998864
No 21
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.2e-16 Score=118.00 Aligned_cols=115 Identities=24% Similarity=0.278 Sum_probs=100.3
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+. .++...|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 51 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 367999999999998 5665558899999999999999996666668899999999999999996666678899999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 999999997766678899999999999998887665
No 22
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=2e-17 Score=130.63 Aligned_cols=115 Identities=24% Similarity=0.241 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .+|.. +..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus 183 ~~L~~L~L~~n~l~-~lp~~-l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 183 VNLQSLRLEWTGIR-SLPAS-IANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp TTCCEEEEEEECCC-CCCGG-GGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCEEECcCCCcC-cchHh-hcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 35666677777666 66665 7778888888888888874 555688888888888888888888888888888899999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPINF 193 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 193 (193)
+++|.+.+.+|..+.++++|++|++++|++.|.+|+.+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 98888888888888888899999999988888888653
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=8.5e-17 Score=120.22 Aligned_cols=112 Identities=24% Similarity=0.263 Sum_probs=100.5
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+.+..+.. |.++++|++|++++|.++...+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 55 l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 133 (220)
T 2v9t_B 55 YKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL 133 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence 367999999999999555555 9999999999999999996555667899999999999999998888899999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
++++|++++..+..+..+++|+.|++++|++..
T Consensus 134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999998777789999999999999999864
No 24
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.1e-16 Score=115.06 Aligned_cols=107 Identities=24% Similarity=0.270 Sum_probs=93.3
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeeccc
Q 041920 79 ILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158 (193)
Q Consensus 79 ~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 158 (193)
+.+++++|++. .+|.. + .+++++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46888888888 67765 4 38899999999999988788899999999999999999966666778999999999999
Q ss_pred CcCCccChhhcCCCccCceeeeeccccCccC
Q 041920 159 NNLNGIIPKEIGSLRFLEVLELSSNNLNGEL 189 (193)
Q Consensus 159 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 189 (193)
|++++..+..|.++++|++|++++|++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9999776667999999999999999998653
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.70 E-value=4.8e-17 Score=136.09 Aligned_cols=114 Identities=22% Similarity=0.179 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+.. |.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGD-LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSST-TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhh-hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 36788888888887444444 77888888888888888766666777778888888888887765555577777777777
Q ss_pred cccCcCCc-cChhhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNG-IIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|.+++ ..|..+.++++|++|++++|.+.+.+|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 77777765 245566677777777777776444554
No 26
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.7e-16 Score=116.12 Aligned_cols=111 Identities=27% Similarity=0.339 Sum_probs=98.6
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCch-hccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecc
Q 041920 79 ILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPS-QIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLN 157 (193)
Q Consensus 79 ~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 157 (193)
+.++++++++. .+|.. +. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~-~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRD-IP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSC-CC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccC-CC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 57999999997 88875 43 3899999999999866554 48899999999999999998889999999999999999
Q ss_pred cCcCCccChhhcCCCccCceeeeeccccCccCCCCC
Q 041920 158 SNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPINF 193 (193)
Q Consensus 158 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 193 (193)
+|++++..|..|.++++|++|++++|.+++.+|..|
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 999998888889999999999999999998877653
No 27
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=1.5e-16 Score=119.62 Aligned_cols=113 Identities=27% Similarity=0.239 Sum_probs=101.8
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|++. .++...|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 63 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 140 (229)
T 3e6j_A 63 LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140 (229)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred ccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence 368999999999997 676665899999999999999999766667899999999999999999 889999999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGEL 189 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 189 (193)
++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999999776677899999999999999998654
No 28
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.7e-16 Score=126.82 Aligned_cols=109 Identities=26% Similarity=0.241 Sum_probs=68.4
Q ss_pred CEEEEEcCCCCcccccCCCcCC-CCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFS-CFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.++.|++++|.++ .++...+. .+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4566777777776 33333354 666677777777666655555566666666666666666654445566666666666
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|++++..|..|.++++|+.|++++|.++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 6666666555556666666666666666665
No 29
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.9e-16 Score=120.73 Aligned_cols=111 Identities=28% Similarity=0.330 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .+++..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 85 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 163 (272)
T 3rfs_A 85 TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163 (272)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence 34555555555555 22222245555555555555555544343345555555555555555533333344455555555
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|++++..+..+..+++|++|++++|.+++
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 55555554433334444555555555555443
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=3.2e-16 Score=120.55 Aligned_cols=116 Identities=25% Similarity=0.259 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+. .+++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|
T Consensus 108 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 108 LTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp CTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 367999999999999 4554448999999999999999997767678899999999999999997767778899999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
++++|++++..|..+..+++|+.|++++|++.|..|.
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 9999999988887789999999999999999887763
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=6.8e-17 Score=137.00 Aligned_cols=108 Identities=24% Similarity=0.250 Sum_probs=61.3
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecc
Q 041920 78 IILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLN 157 (193)
Q Consensus 78 l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 157 (193)
++.|++++|.+.+..+.. |..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 77 L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 445555555555332222 5566666666666666655555555566666666666666653333334556666666666
Q ss_pred cCcCCccChhhcCCCccCceeeeeccccC
Q 041920 158 SNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 158 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+|.+++..|..+..+++|++|++++|.++
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 66666555555666666666666666655
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=5.5e-17 Score=113.81 Aligned_cols=110 Identities=24% Similarity=0.341 Sum_probs=94.0
Q ss_pred CCEEEEEcCCCCcc-cccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIK-GELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~-~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++.|++++|.+. +.++.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 56889999999998 677775 88999999999999999865 568889999999999999987678877778999999
Q ss_pred ecccCcCCcc-ChhhcCCCccCceeeeeccccCcc
Q 041920 155 DLNSNNLNGI-IPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 155 ~l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
++++|.+++. .|..+..+++|++|++++|.+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999999863 347788899999999999998754
No 33
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=5e-16 Score=112.03 Aligned_cols=106 Identities=27% Similarity=0.301 Sum_probs=93.0
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeeccc
Q 041920 79 ILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158 (193)
Q Consensus 79 ~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 158 (193)
+.++++++++. .+|.. +. ++|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~-~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAG-IP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSC-CC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCC-cC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57899999997 88875 43 8999999999999988888899999999999999999965555678999999999999
Q ss_pred CcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 159 NNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 159 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
|++++..+..+..+++|++|++++|++...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 999966666699999999999999999753
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=2.7e-16 Score=129.09 Aligned_cols=108 Identities=24% Similarity=0.209 Sum_probs=87.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|++.+..+.. |.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 57889999999998554554 89999999999999999877778889999999999999999866566688889999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNN 184 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 184 (193)
+++|++++..+..|.++++|+.|++++|+
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~ 182 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELK 182 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCC
Confidence 99998886555556666666666666543
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=4.1e-16 Score=127.59 Aligned_cols=115 Identities=22% Similarity=0.221 Sum_probs=94.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 299 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 299 TDLEQLTLAQNEINKIDDNA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcccccChhH-hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence 56888888888888554544 88888888888888888877777788888888888888888877788888888889999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 988888866666678888899999999988888773
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=7.1e-16 Score=119.81 Aligned_cols=114 Identities=26% Similarity=0.304 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .+|.. +..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CcCCEEECCCCcCC-cCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 46777777777776 66665 77788888888888888866666788888888888888888865556677788888888
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
+++|++++..+..+..+++|++|++++|.++ .+|..
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~ 190 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence 8888888555555677888888888888887 66654
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=9.5e-16 Score=118.41 Aligned_cols=109 Identities=25% Similarity=0.267 Sum_probs=55.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCc-cCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNS-LSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
+++.|++++|.+.+..+.. +..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 57 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 57 NLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp TCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence 4455555555554222322 5555555555555554 4433344455555555555555555544444455555555555
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|++++..+..+.++++|++|++++|.++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 5555555444444555555555555555554
No 38
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.3e-16 Score=112.81 Aligned_cols=113 Identities=21% Similarity=0.232 Sum_probs=83.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccC-CcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTI-PKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L 154 (193)
.+++.|++++|.+.+. .. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|++|
T Consensus 49 ~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCCCC--SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCCCh--hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 5677888888887743 33 777888888888888887666766666888888888888887421 2667778888888
Q ss_pred ecccCcCCccCh---hhcCCCccCceeeeeccccCccCCCC
Q 041920 155 DLNSNNLNGIIP---KEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 155 ~l~~n~l~~~~p---~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
++++|.+++..+ ..+..+++|++|++++|.+. ++|+.
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 888888875544 36777888888888888776 56653
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=4.6e-16 Score=131.63 Aligned_cols=113 Identities=21% Similarity=0.250 Sum_probs=53.8
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+.+..+.. |.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++.+++|++|++
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred cCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 3444444444444222222 444444444444444444443444444444555555544444333344445555555555
Q ss_pred ccCcCCc-cChhhcCCCccCceeeeeccccCccCC
Q 041920 157 NSNNLNG-IIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 157 ~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
++|.+++ .+|..+.++++|++|++++|.+++..|
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 5555543 345555555555555555555554333
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=5.7e-16 Score=120.73 Aligned_cols=113 Identities=25% Similarity=0.377 Sum_probs=62.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCc-cCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSG-SIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
+++.|++++|.+.+..+.. +..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 127 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 4555555555555333332 5555555555555555543 3444555555666666666665554455555556666666
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|++++..+..+..+++|+.|++++|.+++..|
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 66666654444455555666666666666555444
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=129.45 Aligned_cols=108 Identities=24% Similarity=0.228 Sum_probs=77.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|++++|++.+..+. .|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 5677888888888743334 488888888888888888766667788888888888888888755455677778888888
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNN 184 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~ 184 (193)
+++|.+++..+..|.++++|+.|++++|+
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~ 171 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELK 171 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCC
Confidence 88887775555455556666666665543
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.6e-15 Score=116.42 Aligned_cols=109 Identities=27% Similarity=0.313 Sum_probs=61.9
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+. .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 86 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 86 NLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe
Confidence 4555555555554 333333455555555555555555444444555666666666666665433344556666666666
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|++++..+..+.++++|++|++++|.++
T Consensus 165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 666666544445666666666666666665
No 43
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.3e-15 Score=110.27 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=95.6
Q ss_pred EEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeeccc
Q 041920 79 ILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNS 158 (193)
Q Consensus 79 ~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~ 158 (193)
+.++++++++. .+|.. + .+++++|++++|.++ .+|..|..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46899999998 78765 4 368999999999998 6778899999999999999999977778899999999999999
Q ss_pred CcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 159 NNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 159 n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
|++++..|..|..+++|++|++++|.+++ +|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~ 119 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISV-VPE 119 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCB-CCT
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCe-eCh
Confidence 99998888889999999999999999984 554
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=9.7e-16 Score=129.66 Aligned_cols=116 Identities=22% Similarity=0.176 Sum_probs=100.3
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
...++.|++++|.+++..+.. |.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTT-FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTT-STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhH-hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 357899999999998544544 9999999999999999988888889999999999999999998888899999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCc-cCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG-ELPI 191 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~iP~ 191 (193)
++++|++++..|..+.++++|++|++++|.+++ .+|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCccc
Confidence 999999987667778899999999999998886 3343
No 45
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=4.8e-17 Score=140.82 Aligned_cols=111 Identities=31% Similarity=0.385 Sum_probs=93.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|+|++|.+. .++.. +..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..++.+++|++|+
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISAN-IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGG-GGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCCCCC-CCChh-hcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 45677888888887 77766 668888999999999888 77888888899999999999988 7788888889999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
|++|.++ .+|..|.++++|++|+|++|.++|.+|.
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChH
Confidence 9999887 6787888899999999999988876654
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.65 E-value=3.1e-16 Score=122.29 Aligned_cols=124 Identities=26% Similarity=0.295 Sum_probs=78.3
Q ss_pred CCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc--CchhccCCCCCCE
Q 041920 62 SDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS--IPSQIGSLSNLKY 129 (193)
Q Consensus 62 ~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~ 129 (193)
...|.|.++.|.. ..+++.|++++|++. .++...|.++++|++|++++|.++.. .+..+..+++|++
T Consensus 4 ~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 4 RCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 3457899998864 247899999999998 77766588999999999999988732 2444555666666
Q ss_pred EeCcCCCCCccCCcccCCCCCCCeeecccCcCCccCh-hhcCCCccCceeeeeccccCc
Q 041920 130 LGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIP-KEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 130 L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g 187 (193)
|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc
Confidence 666666655 344444455555555555555543322 234444444444444444443
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.1e-15 Score=117.57 Aligned_cols=111 Identities=25% Similarity=0.351 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 52 PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp TTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred cCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 35556666666665 33332356666666666666666555555566666666666666666644444566666666777
Q ss_pred cccCcCCcc-ChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNNLNGI-IPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~l~~~-~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|.+++. +|..+.++++|++|++++|.+++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 766666642 46666666777777777776664
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=9e-16 Score=125.57 Aligned_cols=114 Identities=28% Similarity=0.319 Sum_probs=104.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.+++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSV-FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp SCCCEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred cCceEEEecCccccccchhh-cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 47899999999999766665 99999999999999999988888899999999999999999987788999999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++++..|..+..+++|++|++++|.+++ +|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~ 388 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred CCCCcccccChhhccccccccEEECCCCcccc-CCH
Confidence 99999998889999999999999999999985 443
No 49
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=125.66 Aligned_cols=114 Identities=30% Similarity=0.334 Sum_probs=80.7
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.|++++|++.+..+.. |.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 46777888888877433443 77778888888888877766677777777777777777777744444567777777777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|++++..|..+.++++|+.|++++|.+++..|
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeCh
Confidence 77777776666667777777777777776664443
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.64 E-value=3.5e-16 Score=125.89 Aligned_cols=108 Identities=26% Similarity=0.367 Sum_probs=66.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCc-ccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPK-EIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ 155 (193)
+++.|++++|.+. .+++..|..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|. .+..+++|++|+
T Consensus 70 ~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 70 QVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence 4556666666665 333323666666666666666666555555666666666666666666 3333 345666666666
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|++++..|..+.++++|+.|++++|.++
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 6666666555555666666666666666665
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.64 E-value=7.4e-16 Score=130.31 Aligned_cols=115 Identities=24% Similarity=0.311 Sum_probs=102.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|++. .+++..|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..++.+++|++|+
T Consensus 76 ~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 76 PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 57999999999998 66665699999999999999999977677899999999999999999966667799999999999
Q ss_pred cccCcCCc-cChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNG-IIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|.+++ .+|..+..+++|++|++++|.+++..|.
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 99999975 4678889999999999999999865554
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=2e-15 Score=116.58 Aligned_cols=109 Identities=27% Similarity=0.310 Sum_probs=51.1
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 3444444444444222222 444444444444444444333333444445555555555544333333444555555555
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|.+++..|..+.++++|+.|++++|.++
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 555555444555555555555555555554
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=1.6e-15 Score=128.25 Aligned_cols=117 Identities=26% Similarity=0.263 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+.+..+.. |.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYS-FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhh-ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 467999999999998544444 9999999999999999998778889999999999999999998779999999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCc-cCCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG-ELPIN 192 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~iP~~ 192 (193)
++++|.+++..|..+.++++|++|++++|.+++ .+|..
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~ 148 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY 148 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHh
Confidence 999999997777889999999999999999985 66754
No 54
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.9e-15 Score=120.69 Aligned_cols=114 Identities=27% Similarity=0.308 Sum_probs=98.2
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|++. .+++..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 63 l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 63 LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 367999999999999 5554459999999999999999997777779999999999999999998778899999999999
Q ss_pred ecccCcCCccChhhc---CCCccCceeeeeccccCccCC
Q 041920 155 DLNSNNLNGIIPKEI---GSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~---~~l~~L~~L~l~~N~l~g~iP 190 (193)
++++|++++..+..+ ..+++|+.|++++|.++ .+|
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~ 179 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLP 179 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCC
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccC
Confidence 999999996444444 57999999999999998 455
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=1.4e-15 Score=133.56 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccC-chhccCCCCCCEEeCcCCCCCccCC
Q 041920 64 HCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSI-PSQIGSLSNLKYLGLDQNNLTGTIP 142 (193)
Q Consensus 64 ~c~w~gv~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p 142 (193)
.|.|..|++ ...+++.|++++|.+.+..+.. |.++++|++|++++|...+.+ |..|.++++|++|++++|.+++..|
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 345666666 5567777777777776443443 666666666666666443333 4556666666666666666665556
Q ss_pred cccCCCCCCCeeecccCcCCccChhh--cCCCccCceeeeeccccCcc
Q 041920 143 KEIGSLRNLVGLDLNSNNLNGIIPKE--IGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~L~l~~N~l~g~ 188 (193)
..+..+++|++|++++|.+++.+|.. +.++++|++|++++|.+++.
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 66666666666666666666544443 55566666666666655543
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=1.5e-15 Score=116.76 Aligned_cols=115 Identities=29% Similarity=0.321 Sum_probs=85.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|++. .++...+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45778888888887 44443377788888888888887766566677788888888888888766667777788888888
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCc-cCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG-ELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g-~iP~ 191 (193)
+++|++++..+..+.++++|++|++++|.+++ .+|.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~ 143 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCch
Confidence 88888876655567778888888888887764 3454
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.62 E-value=5.3e-15 Score=116.61 Aligned_cols=120 Identities=28% Similarity=0.425 Sum_probs=101.7
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeC
Q 041920 63 DHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132 (193)
Q Consensus 63 ~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 132 (193)
..|.|..+.|.. ..+++.|++++|.+. .+++..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 347888888863 247899999999998 454434999999999999999999888889999999999999
Q ss_pred cCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 133 DQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 133 s~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|.++ .+|..+. ++|++|++++|++++..+..+.++++|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 999998 6776655 78999999999998666667888999999999999885
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=1.5e-15 Score=108.46 Aligned_cols=110 Identities=27% Similarity=0.374 Sum_probs=98.1
Q ss_pred CCEEEEEcCCCCcc-cccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIK-GELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~-~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++.|++++|++. +.++.. +..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 67999999999998 678776 89999999999999999865 678999999999999999997788888889999999
Q ss_pred ecccCcCCccC-hhhcCCCccCceeeeeccccCcc
Q 041920 155 DLNSNNLNGII-PKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 155 ~l~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
++++|.+++.. +..+..+++|++|++++|.+++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence 99999998642 26889999999999999999853
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=2.8e-16 Score=134.18 Aligned_cols=114 Identities=18% Similarity=0.324 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCCCcccc-----------------cCCCcCC--CCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCC
Q 041920 75 EGSIILIDLQESNIKGE-----------------LGRLNFS--CFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQN 135 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~-----------------l~~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n 135 (193)
..+++.|++++|.+++. +|.. +. ++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 36789999999999975 8887 88 9999999999999999999999999999999999999
Q ss_pred C-CCc-cCCcccCCC------CCCCeeecccCcCCccChh--hcCCCccCceeeeeccccCccCC
Q 041920 136 N-LTG-TIPKEIGSL------RNLVGLDLNSNNLNGIIPK--EIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 136 ~-l~~-~~p~~~~~l------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+ +++ .+|..++.+ ++|++|++++|+++ .+|. .+.++++|++|++++|.++|.+|
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 8 988 788887776 89999999999999 7888 89999999999999999998888
No 60
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=2.9e-15 Score=112.86 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCc-cCccCchhccCCCCCCEEeCcC-CCCCccCCcccCCCCCCCe
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNS-LSGSIPSQIGSLSNLKYLGLDQ-NNLTGTIPKEIGSLRNLVG 153 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~ 153 (193)
..++.|++++|+++ .++...|..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 46778888888887 4544347778888888888886 7655555677778888888887 7777555566777777777
Q ss_pred eecccCcCCccChhhcCCCccCc---eeeeecc-ccC
Q 041920 154 LDLNSNNLNGIIPKEIGSLRFLE---VLELSSN-NLN 186 (193)
Q Consensus 154 L~l~~n~l~~~~p~~~~~l~~L~---~L~l~~N-~l~ 186 (193)
|++++|++++ +|. +..+++|+ +|++++| .++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence 7777777764 454 55566665 6666666 554
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.61 E-value=3e-15 Score=128.28 Aligned_cols=116 Identities=28% Similarity=0.316 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+.+ +++..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 3567788888888774 443337777788888888877776667777777777777777777774333457777777777
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
++++|++++..|..|.++++|++|++++|.+++..|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 7777777765556677777777777777777665554
No 62
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=2.1e-15 Score=127.20 Aligned_cols=108 Identities=24% Similarity=0.298 Sum_probs=99.1
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.++.|++++|.++ .+|. +..+++|++|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 4788999999998 5764 899999999999999999 789899999999999999999995 77 8999999999999
Q ss_pred ccCcCCccC-hhhcCCCccCceeeeeccccCccCC
Q 041920 157 NSNNLNGII-PKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 157 ~~n~l~~~~-p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
++|++++.. |..+..+++|+.|++++|++++..|
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 999999876 9999999999999999999997654
No 63
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.5e-14 Score=104.13 Aligned_cols=109 Identities=22% Similarity=0.212 Sum_probs=93.5
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecc
Q 041920 78 IILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLN 157 (193)
Q Consensus 78 l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 157 (193)
.+.++++++++. .+|.. + .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTG-I--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTT-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCC-C--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 357899999988 66654 3 4789999999999997666678999999999999999996666668899999999999
Q ss_pred cCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 158 SNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 158 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+|++++..+..+..+++|++|++++|.++ .+|.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 117 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD 117 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcce-EeCH
Confidence 99999777777889999999999999998 4554
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=7e-15 Score=114.21 Aligned_cols=111 Identities=31% Similarity=0.375 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++. ...+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 55 ~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 55 TRLTQLNLDRAELT-KLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp TTCCEEECTTSCCC-EEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccC-cccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 34455555555554 2322 245556666666666665 4555566777777777777777755556677777777777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++++..+..|..+++|+.|++++|.++ .+|.
T Consensus 131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~ 165 (290)
T 1p9a_G 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA 165 (290)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCT
T ss_pred CCCCCCCccChhhcccccCCCEEECCCCcCC-ccCH
Confidence 7777777655556677777788888877776 4443
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=124.58 Aligned_cols=112 Identities=25% Similarity=0.331 Sum_probs=63.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|++. .+++..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++.+++|++|+
T Consensus 52 ~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 34555555555555 23322355556666666666655544445555566666666666665533333456666666666
Q ss_pred cccCcCCc-cChhhcCCCccCceeeeeccccCcc
Q 041920 156 LNSNNLNG-IIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 156 l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
+++|.+++ .+|..+.++++|++|++++|.+++.
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 66666654 3466666666666666666666543
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.60 E-value=4.1e-15 Score=124.72 Aligned_cols=115 Identities=24% Similarity=0.380 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccC-ccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS-GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++.|++++|.+.+..+.. +..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhh-hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 35666666666666444444 666777777777777765 4566667777777777777777776667777777778888
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
++++|++++..|..+.++++|+.|++++|+++|..|.
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 8887777766666677777888888888887777664
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.5e-15 Score=123.78 Aligned_cols=124 Identities=23% Similarity=0.179 Sum_probs=95.0
Q ss_pred CCcccceeeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhcc-CCCCCCEEeCcCCCCCccCC
Q 041920 64 HCKWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIG-SLSNLKYLGLDQNNLTGTIP 142 (193)
Q Consensus 64 ~c~w~gv~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p 142 (193)
.|...++.+.....++.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 35566666666677889999999988655555 88889999999999999877777665 688888888888888855 3
Q ss_pred cccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 143 KEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
. ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred c-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchh
Confidence 2 3357888888888888886544 47788888888888888874 5643
No 68
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=4.5e-15 Score=108.82 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=51.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCC-CCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNN-LTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ 155 (193)
+++.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|+
T Consensus 89 ~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp TCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred CCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 4455555555555433433 5555555555555555554444445555555555555554 33 333 344455555555
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|.+++ ++ .+..+++|++|++++|++.
T Consensus 166 l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 166 IQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 55555543 22 3445555555555555543
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.59 E-value=1.8e-14 Score=113.38 Aligned_cols=121 Identities=27% Similarity=0.418 Sum_probs=92.4
Q ss_pred CCCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEe
Q 041920 62 SDHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLG 131 (193)
Q Consensus 62 ~~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 131 (193)
...|.++.+.|.. ...++.|++++|++. .++...|.++++|++|++++|.+++..|..+..+++|++|+
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3457888888853 247889999999998 45544499999999999999999987788899999999999
Q ss_pred CcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 132 LDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 132 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 9999988 5665543 56777777777776655555666666666666666553
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=5.1e-15 Score=108.52 Aligned_cols=107 Identities=17% Similarity=0.282 Sum_probs=79.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++ . +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 66 ~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 66 HNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp TTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 46777777777665 333 2 77778888888888888766666777788888888888888766677777788888888
Q ss_pred cccCc-CCccChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNN-LNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~-l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|. ++ .+| .+..+++|++|++++|.+++
T Consensus 143 L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 143 LSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC
T ss_pred ccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC
Confidence 88887 54 455 57778888888888887763
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.58 E-value=7.2e-15 Score=123.56 Aligned_cols=118 Identities=24% Similarity=0.266 Sum_probs=98.8
Q ss_pred cccceeeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCccc
Q 041920 66 KWVGIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEI 145 (193)
Q Consensus 66 ~w~gv~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 145 (193)
...++..+...+++.|++++|.+.+ +++..|.++++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..
T Consensus 42 ~L~~ip~~~~~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~- 118 (562)
T 3a79_B 42 NLTHVPKDLPPRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC- 118 (562)
T ss_dssp CCCSCCTTSCTTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-
T ss_pred CCccCCCCCCCCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-
Confidence 3444444445789999999999984 44434999999999999999999887888999999999999999998 67766
Q ss_pred CCCCCCCeeecccCcCCc-cChhhcCCCccCceeeeeccccCc
Q 041920 146 GSLRNLVGLDLNSNNLNG-IIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 146 ~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
.+++|++|++++|++++ .+|..+.++++|++|++++|.+++
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 78999999999999986 356789999999999999998864
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=115.84 Aligned_cols=117 Identities=27% Similarity=0.301 Sum_probs=99.1
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCc--ccCCCCCCC
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPK--EIGSLRNLV 152 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~ 152 (193)
..+++.|++++|.+.+..+.. |.++++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|+
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 75 CVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred CCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence 367999999999999544444 999999999999999999655555899999999999999998 4554 788999999
Q ss_pred eeecccC-cCCccChhhcCCCccCceeeeeccccCccCCCCC
Q 041920 153 GLDLNSN-NLNGIIPKEIGSLRFLEVLELSSNNLNGELPINF 193 (193)
Q Consensus 153 ~L~l~~n-~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~~ 193 (193)
+|++++| .+++..|..+.++++|+.|++++|.+++..|..|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 9999999 4776667788999999999999999987767543
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.57 E-value=8.7e-15 Score=122.37 Aligned_cols=118 Identities=27% Similarity=0.298 Sum_probs=102.4
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCc-cCCcccCCCCCCCe
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVG 153 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~ 153 (193)
..+++.|++++|++.+..+.. |..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..++.+++|++
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 368999999999999555454 9999999999999999998777779999999999999999986 35678999999999
Q ss_pred eecccCcCCccCh-hhcCCCccCceeeeeccccCccCCCCC
Q 041920 154 LDLNSNNLNGIIP-KEIGSLRFLEVLELSSNNLNGELPINF 193 (193)
Q Consensus 154 L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~~ 193 (193)
|++++|.+.+.+| ..+.++++|++|++++|.+++.+|..+
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 9999999544554 679999999999999999998777653
No 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.57 E-value=2e-14 Score=113.96 Aligned_cols=109 Identities=24% Similarity=0.257 Sum_probs=91.0
Q ss_pred CCcccceeeCCCCCEEEEEcCCC-CcccccCCCcCCCCCCCcEEEccc-CccCccCchhccCCCCCCEEeCcCCCCCccC
Q 041920 64 HCKWVGIICDYEGSIILIDLQES-NIKGELGRLNFSCFPNLQYLDLWN-NSLSGSIPSQIGSLSNLKYLGLDQNNLTGTI 141 (193)
Q Consensus 64 ~c~w~gv~c~~~~~l~~L~l~~n-~l~~~l~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~ 141 (193)
.|.|..+.| +++ ++. .+|. +..+++|++|+|++ |.+++..+..|..+++|+.|+|++|++++..
T Consensus 7 ~C~~~~v~~-----------~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 72 (347)
T 2ifg_A 7 PHGSSGLRC-----------TRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72 (347)
T ss_dssp CSSSSCEEC-----------CSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC
T ss_pred cccCCEEEc-----------CCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC
Confidence 366655555 444 676 6776 88899999999996 9999777788999999999999999999888
Q ss_pred CcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 142 PKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 142 p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
|..|..+++|+.|+|++|+|++..+..+..++ |+.|++.+|++..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred HHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88899999999999999999966555565555 9999999999874
No 75
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.57 E-value=5.3e-15 Score=123.07 Aligned_cols=109 Identities=25% Similarity=0.283 Sum_probs=84.0
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+.+..+.. |..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 95 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSD-ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHL 95 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHH-HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEE
T ss_pred cccccEEECCCCcccccChhh-ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEE
Confidence 367888888888887443343 788888888888888888766777888888888888888887 56655 67888888
Q ss_pred ecccCcCCc-cChhhcCCCccCceeeeeccccCc
Q 041920 155 DLNSNNLNG-IIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 155 ~l~~n~l~~-~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
++++|.+++ .+|..++++++|++|++++|.+++
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch
Confidence 888888876 467778888888888888877753
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=9.3e-15 Score=128.42 Aligned_cols=117 Identities=24% Similarity=0.296 Sum_probs=98.8
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcc--cCCCCCCC
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKE--IGSLRNLV 152 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~--~~~l~~L~ 152 (193)
..+++.|++++|...+.+++..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++.+|.. +..+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 3678899999997777886556999999999999999998888888999999999999999998766655 88899999
Q ss_pred eeecccCcCCccCh-hhcCCCccCceeeeeccccCccCCC
Q 041920 153 GLDLNSNNLNGIIP-KEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 153 ~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+|++++|.+++..| ..+.++++|++|++++|.+++..|.
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence 99999999987654 5788999999999999988876554
No 77
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=1.4e-14 Score=122.86 Aligned_cols=142 Identities=14% Similarity=0.133 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCCCCCCc----ccceeeCC-----------------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEc
Q 041920 50 SGWWKDRIPHNTSDHCK----WVGIICDY-----------------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDL 108 (193)
Q Consensus 50 ~~~~~~~~~~~~~~~c~----w~gv~c~~-----------------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l 108 (193)
..|+...+|..+.+||. |.++.|+. ..+++.++++++.+. .+|+..+..+++|++|++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNL 82 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEES-EECTHHHHHCCCCSEEEC
T ss_pred cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEEC
Confidence 34566677886666663 66665541 145688999999887 777766788999999999
Q ss_pred ccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 109 WNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 109 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..|.++++|++|++++|.+++.
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 99999987777899999999999999999987788889999999999999999966555678999999999999999977
Q ss_pred CCCC
Q 041920 189 LPIN 192 (193)
Q Consensus 189 iP~~ 192 (193)
.|..
T Consensus 163 ~~~~ 166 (597)
T 3oja_B 163 EDDT 166 (597)
T ss_dssp CTTT
T ss_pred Chhh
Confidence 6654
No 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=9.3e-15 Score=105.28 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCC-CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFP-NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++.|++++|.+. .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~-~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCc-hhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34566666666665 3432 33333 666666666666543 345556666666666666653322333555666666
Q ss_pred ecccCcCCccChh--hcCCCccCceeeeeccccC
Q 041920 155 DLNSNNLNGIIPK--EIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~ 186 (193)
++++|+++ .+|. .+..+++|++|++++|+++
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 66666664 3443 4555666666666666654
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.56 E-value=2.3e-14 Score=115.29 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=96.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.++++++.+. .+|...+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46788899998887 67776578889999999999999877677889999999999999999877777888999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|+++...+..+.++++|++|++++|.+++..|.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 159 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChh
Confidence 999999854444468899999999999998865554
No 80
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=117.65 Aligned_cols=110 Identities=26% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+.. |.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 56 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 56 PHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp TTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 45677777777776443443 66777777777777776644444456666677777777666655556666666666666
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|.+++..|..|..+++|+.|++++|.++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 6666666555555555666666666665554
No 81
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=6.2e-15 Score=103.25 Aligned_cols=105 Identities=19% Similarity=0.204 Sum_probs=91.6
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCcc-CCcccCCCCCCCe
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT-IPKEIGSLRNLVG 153 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~ 153 (193)
..+++.|++++|.+.+. .. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .+..+..+++|++
T Consensus 41 l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred cCCCcEEECcCCCCCCc--hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 36899999999999854 43 89999999999999999977888888899999999999999853 3478899999999
Q ss_pred eecccCcCCccCh---hhcCCCccCceeeeec
Q 041920 154 LDLNSNNLNGIIP---KEIGSLRFLEVLELSS 182 (193)
Q Consensus 154 L~l~~n~l~~~~p---~~~~~l~~L~~L~l~~ 182 (193)
|++++|.+++..+ ..+..+++|+.|++++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999997655 4788999999999864
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=5.1e-15 Score=115.90 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=56.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCC-----CCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCcc--CCccc--CC
Q 041920 77 SIILIDLQESNIKGELGRLNFSCF-----PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT--IPKEI--GS 147 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~p~~~--~~ 147 (193)
+++.|++++|.+.+. |.. +..+ ++|++|++++|.+++..|..+..+++|++|++++|++.+. .|..+ ..
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAW-LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCSEEEEESCBCSSS-SSH-HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CccEEEccCCCCcch-hHH-HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 444555555555432 322 3333 4555555555555544445555555556666665555433 12222 45
Q ss_pred CCCCCeeecccCcCCc--cCh-hhcCCCccCceeeeeccccCccC
Q 041920 148 LRNLVGLDLNSNNLNG--IIP-KEIGSLRFLEVLELSSNNLNGEL 189 (193)
Q Consensus 148 l~~L~~L~l~~n~l~~--~~p-~~~~~l~~L~~L~l~~N~l~g~i 189 (193)
+++|++|++++|++++ .++ ..+..+++|++|++++|.+++.+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 5566666666666552 111 22345566666666666666544
No 83
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.54 E-value=1.6e-14 Score=122.18 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=28.1
Q ss_pred ccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 121 IGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 121 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++| +|++++|.++
T Consensus 472 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp GGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred hccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 3333444444444444443333444444444444444444444444444444444 4444444444
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.54 E-value=3e-14 Score=116.52 Aligned_cols=110 Identities=27% Similarity=0.322 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|+..+.++...|.++++|++|++++|.++ .+| .+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 467788888755444666655777888888888888777 344 367777777788877777766677777777777777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|++++..|..|.++++|+.|++++|.+++
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 77777776666677777777777777777763
No 85
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.53 E-value=3.8e-14 Score=116.26 Aligned_cols=110 Identities=25% Similarity=0.304 Sum_probs=78.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++++..+.++...|.++++|++|++++|.+++ +| .+..+++|+.|++++|.+++..|..+..+++|+.|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 4677788877544446666557777777777777777763 34 366777777777777777766677777777777777
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
+++|++++..|..|..+++|+.|++++|.+++
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 77777776666667777777777777777763
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=118.31 Aligned_cols=114 Identities=24% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCc--cCchhccCCCCCCEEeCcCCCCCccCCcc-cCCCC--
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSG--SIPSQIGSLSNLKYLGLDQNNLTGTIPKE-IGSLR-- 149 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~-- 149 (193)
..+++.|++++|.+.+.++.. +..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 356677777777777656654 6777777777777777764 34455666677777777777766534432 33444
Q ss_pred --------------------CCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 150 --------------------NLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 150 --------------------~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~ 461 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPD 461 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCT
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCH
Confidence 5555555555555 45555556777777777777776 4554
No 87
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.52 E-value=6.6e-14 Score=110.17 Aligned_cols=85 Identities=27% Similarity=0.430 Sum_probs=53.7
Q ss_pred CCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeee
Q 041920 101 PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLEL 180 (193)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 180 (193)
++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 45555566666665555555666666666666666666555555666666666666666666 55666666666666666
Q ss_pred eccccC
Q 041920 181 SSNNLN 186 (193)
Q Consensus 181 ~~N~l~ 186 (193)
++|+++
T Consensus 271 ~~N~i~ 276 (330)
T 1xku_A 271 HNNNIS 276 (330)
T ss_dssp CSSCCC
T ss_pred CCCcCC
Confidence 666665
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=1.7e-14 Score=108.65 Aligned_cols=113 Identities=19% Similarity=0.238 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCCC-cccccCCCcCCCCCCCcEEEccc-CccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCC
Q 041920 75 EGSIILIDLQESN-IKGELGRLNFSCFPNLQYLDLWN-NSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLV 152 (193)
Q Consensus 75 ~~~l~~L~l~~n~-l~~~l~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~ 152 (193)
..+++.|++++|. +. .+++..|.++++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 3578899999997 76 66654588899999999998 88886666678888999999999998884 666 77778887
Q ss_pred ---eeecccC-cCCccChhhcCCCccCc-eeeeeccccCccCCC
Q 041920 153 ---GLDLNSN-NLNGIIPKEIGSLRFLE-VLELSSNNLNGELPI 191 (193)
Q Consensus 153 ---~L~l~~n-~l~~~~p~~~~~l~~L~-~L~l~~N~l~g~iP~ 191 (193)
+|++++| ++++..+..|.++++|+ .|++++|.++ .+|.
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 8888888 88866666688888888 8888888887 5654
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1.4e-14 Score=113.38 Aligned_cols=115 Identities=22% Similarity=0.263 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc--Cchhc--cCCCCCCEEeCcCCCCCc--cCC-cccCCC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS--IPSQI--GSLSNLKYLGLDQNNLTG--TIP-KEIGSL 148 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~l~~L~~L~ls~n~l~~--~~p-~~~~~l 148 (193)
.+++.|++++|.+.+..+.. +..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++ ..+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 56788888888887444344 77888888888888876654 23333 667777777777777762 112 223456
Q ss_pred CCCCeeecccCcCCccCh-hhcCCCccCceeeeeccccCccCCCC
Q 041920 149 RNLVGLDLNSNNLNGIIP-KEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 149 ~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 677777777777776554 33445667777777777776 66654
No 90
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=6.6e-15 Score=129.41 Aligned_cols=112 Identities=18% Similarity=0.252 Sum_probs=87.9
Q ss_pred CCEEEEEcCCCCccc-----------------ccCCCcCC--CCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCC
Q 041920 76 GSIILIDLQESNIKG-----------------ELGRLNFS--CFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNN 136 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~-----------------~l~~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~ 136 (193)
.+++.|++++|.+++ .+|.. +. ++++|++|++++|.+.+.+|..+.++++|+.|++++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 578889999999887 27776 66 88999999999998888888888888888888888887
Q ss_pred -CCc-cCCcccCCC-------CCCCeeecccCcCCccChh--hcCCCccCceeeeeccccCccCC
Q 041920 137 -LTG-TIPKEIGSL-------RNLVGLDLNSNNLNGIIPK--EIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 137 -l~~-~~p~~~~~l-------~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++ .+|..++.+ ++|++|++++|+++ .+|. .+.++++|+.|++++|.++ .+|
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 877 666654443 37777888777777 6676 6777777777777777776 666
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.52 E-value=2.7e-14 Score=122.33 Aligned_cols=113 Identities=28% Similarity=0.339 Sum_probs=61.3
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+. .++...|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 74 ~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 74 MLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred CcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 4555555555555 344333555555555555555555444445555555666666655555555555555555666666
Q ss_pred ccCcCCccChhhcC--CCccCceeeeeccccCccCC
Q 041920 157 NSNNLNGIIPKEIG--SLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 157 ~~n~l~~~~p~~~~--~l~~L~~L~l~~N~l~g~iP 190 (193)
++|.+++..|..+. .+++|+.|++++|.+++..|
T Consensus 153 ~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 66555554444332 34556666666665554444
No 92
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=4.9e-14 Score=110.53 Aligned_cols=118 Identities=24% Similarity=0.186 Sum_probs=70.5
Q ss_pred ceeeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhc-cCCCCCCEEeCcCCCCCccCCcccCC
Q 041920 69 GIICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQI-GSLSNLKYLGLDQNNLTGTIPKEIGS 147 (193)
Q Consensus 69 gv~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~~~~~ 147 (193)
++......+++.|++++|.+.+..+.. +..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...
T Consensus 113 ~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~ 189 (317)
T 3o53_A 113 RVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (317)
T ss_dssp EEEECCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CcCccccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccc
Confidence 333333445677777777776433333 6667777777777777765555444 3566677777777776633 22 223
Q ss_pred CCCCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCCC
Q 041920 148 LRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPI 191 (193)
Q Consensus 148 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~ 191 (193)
+++|++|++++|++++. |..+..+++|+.|++++|.++ .+|.
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhh
Confidence 56666666666666643 334666666666666666665 3444
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.50 E-value=9.5e-14 Score=116.75 Aligned_cols=114 Identities=24% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc--CchhccCCCCCCEEeCcCCCCCccCCcc-cCCC----
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS--IPSQIGSLSNLKYLGLDQNNLTGTIPKE-IGSL---- 148 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l---- 148 (193)
.+++.|++++|.+.+.++.. +.++++|++|++++|.+++. .|..+..+++|++|++++|.+++.+|.. +..+
T Consensus 353 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 45667777777776555554 66666666777666666642 2344566666666666666666434432 3333
Q ss_pred ------------------CCCCeeecccCcCCccChhhcCCCccCceeeeeccccCccCCCC
Q 041920 149 ------------------RNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 149 ------------------~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP~~ 192 (193)
++|++|++++|+++ .+|..+..+++|+.|++++|.++ .+|..
T Consensus 432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~ 491 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG 491 (562)
T ss_dssp EEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred EEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence 45666666666666 45665667777778888877777 56653
No 94
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=1.5e-13 Score=98.55 Aligned_cols=101 Identities=22% Similarity=0.244 Sum_probs=85.1
Q ss_pred CCCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeC
Q 041920 63 DHCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGL 132 (193)
Q Consensus 63 ~~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 132 (193)
..|.|..+.|.. ...++.|++++|.+.+..+.. |..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 7 C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 7 CSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp CEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 346677777643 357899999999999544554 999999999999999999776667899999999999
Q ss_pred cCCCCCccCCcccCCCCCCCeeecccCcCCcc
Q 041920 133 DQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGI 164 (193)
Q Consensus 133 s~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 164 (193)
++|++++..+..+..+++|++|++++|.++..
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99999966666799999999999999999755
No 95
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.9e-14 Score=102.70 Aligned_cols=106 Identities=23% Similarity=0.231 Sum_probs=91.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCc--ccCCCCCCCe
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPK--EIGSLRNLVG 153 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~ 153 (193)
.+++.|++++|.+.+ + .. +..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++
T Consensus 42 ~~L~~L~Ls~N~l~~-~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRK-L-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY 117 (176)
T ss_dssp TCCSEEECCSSCCCE-E-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred CCCCEEECCCCCCCc-c-cc-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence 479999999999994 4 33 999999999999999999654455689999999999999997 5665 7889999999
Q ss_pred eecccCcCCccChhh----cCCCccCceeeeeccccC
Q 041920 154 LDLNSNNLNGIIPKE----IGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 154 L~l~~n~l~~~~p~~----~~~l~~L~~L~l~~N~l~ 186 (193)
|++++|.++ .+|.. +..+++|+.||+++|...
T Consensus 118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999998 45654 889999999999998753
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=112.35 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc--Cc--hhccCCCCCCEEeCcCCCCCccCCc----ccCC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS--IP--SQIGSLSNLKYLGLDQNNLTGTIPK----EIGS 147 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~--~p--~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~ 147 (193)
.+++.|++++|.+.+..+.. +..+++|++|++++|.+.+. ++ ..+..+++|++|++++|.++ .++. .+..
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQ-VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTS-CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHH-hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 35666666666665333333 66666666666666665421 11 11234444455555554443 1111 1233
Q ss_pred CCCCCeeecccCcCCccChhhcCCC---ccCceeeeeccccC
Q 041920 148 LRNLVGLDLNSNNLNGIIPKEIGSL---RFLEVLELSSNNLN 186 (193)
Q Consensus 148 l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~N~l~ 186 (193)
+++|++|++++|++++..|..+..+ ++|++|++++|.++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 4445555555555544434433333 34455555555444
No 97
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.46 E-value=1.5e-13 Score=108.26 Aligned_cols=109 Identities=19% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 45667777777776433333 777777777777777777655556777777777777777777 6676677777777777
Q ss_pred cccCcCCccChhhcCC------CccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGS------LRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~------l~~L~~L~l~~N~l~ 186 (193)
+++|.+++..+..+.. .++|+.+++++|++.
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 7777777554444433 355677777777665
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=9e-14 Score=120.41 Aligned_cols=153 Identities=25% Similarity=0.210 Sum_probs=97.8
Q ss_pred cccccHHHHHHHhcCCCCCCCCCCC-CCCCCcccceeeCCCCCEEE------------------EEcCCCCccc------
Q 041920 36 HVAASETERQALLNSGWWKDRIPHN-TSDHCKWVGIICDYEGSIIL------------------IDLQESNIKG------ 90 (193)
Q Consensus 36 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~c~w~gv~c~~~~~l~~------------------L~l~~n~l~~------ 90 (193)
+..++.+...++...+|.....|.. ......|.++.+.. ++++. ++|+.+.+.+
T Consensus 133 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n 211 (727)
T 4b8c_D 133 TKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIEN 211 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTC-------------------------------------------------------------
T ss_pred chhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccc
Confidence 3456667777777777777777753 34455777665543 23333 3344443332
Q ss_pred --ccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhh
Q 041920 91 --ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKE 168 (193)
Q Consensus 91 --~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 168 (193)
.+++..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|+|+ .+|..
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~ 288 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAE 288 (727)
T ss_dssp ----------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSS
T ss_pred ceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChh
Confidence 122334788999999999999998 67777789999999999999999 89999999999999999999999 78999
Q ss_pred cCCCccCceeeeeccccCccCCCCC
Q 041920 169 IGSLRFLEVLELSSNNLNGELPINF 193 (193)
Q Consensus 169 ~~~l~~L~~L~l~~N~l~g~iP~~~ 193 (193)
|.++++|++|+|++|.++ .+|..|
T Consensus 289 ~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp GGGGTTCSEEECCSSCCC-CCCSST
T ss_pred hcCCCCCCEEECCCCCCC-ccChhh
Confidence 999999999999999996 888754
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=1.6e-13 Score=115.65 Aligned_cols=109 Identities=24% Similarity=0.364 Sum_probs=63.1
Q ss_pred CCCCC-----cccce-eeCCCCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcC
Q 041920 61 TSDHC-----KWVGI-ICDYEGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQ 134 (193)
Q Consensus 61 ~~~~c-----~w~gv-~c~~~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~ 134 (193)
..++| .|.++ .|.. ++++.|++++|++.+ +|.. + +++|++|++++|.++ .+| ..+++|++|++++
T Consensus 39 ~~~~~~~~~~~~~~l~~C~~-~~L~~L~Ls~n~L~~-lp~~-l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECLI-NQFSELQLNRLNLSS-LPDN-L--PPQITVLEITQNALI-SLP---ELPASLEYLDACD 109 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHHH-TTCSEEECCSSCCSC-CCSC-C--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCS
T ss_pred cCCccccccchhhhcccccc-CCccEEEeCCCCCCc-cCHh-H--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccC
Confidence 44566 68887 5653 467778888887774 6654 3 256677777777666 445 3356666666666
Q ss_pred CCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 135 NNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 135 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
|.+++ +|. +.. +|++|++++|++++ +|. .+++|+.|++++|.++
T Consensus 110 N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 110 NRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp SCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 66664 444 332 55555555555553 333 3444444444444444
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=107.34 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCcc--C--CcccCCCCCCCeeecccCcCCccChh----hcCC
Q 041920 100 FPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGT--I--PKEIGSLRNLVGLDLNSNNLNGIIPK----EIGS 171 (193)
Q Consensus 100 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~--~--p~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~ 171 (193)
+++|++|++++|.+++..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|+++ .+|. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 34444444444444433344444555555555555554321 1 111234455555555555554 2222 1345
Q ss_pred CccCceeeeeccccCccCCCC
Q 041920 172 LRFLEVLELSSNNLNGELPIN 192 (193)
Q Consensus 172 l~~L~~L~l~~N~l~g~iP~~ 192 (193)
+++|++|++++|.+++.+|+.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSC
T ss_pred CCCCCEEECCCCCCCccchhh
Confidence 677777777777777655543
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.42 E-value=9.7e-13 Score=102.08 Aligned_cols=101 Identities=28% Similarity=0.405 Sum_probs=44.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+. .++. +..+++|++|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|++|++
T Consensus 91 ~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 91 NLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp TCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 3444444444444 2221 44444444555544444421 2244444444444444444422 33444444555555
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|++++..| +..+++|+.|++++|.++
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5554443222 444444555555444443
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.42 E-value=4.3e-13 Score=105.18 Aligned_cols=107 Identities=22% Similarity=0.218 Sum_probs=91.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+...+..+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 68999999999999655554235789999999999999854 43 346899999999999999 4566688999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|+++ .+|..+..+++|+.|++++|+++
T Consensus 221 L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999 56888999999999999999987
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=1.3e-12 Score=99.96 Aligned_cols=103 Identities=29% Similarity=0.392 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .+++ +..+++|++|++++|.+++ +|. +.. ++|++|++++|.+++ + ..+..+++|++|+
T Consensus 63 ~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~ 134 (263)
T 1xeu_A 63 TNLKELHLSHNQIS-DLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILS 134 (263)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEE
T ss_pred CCCCEEECCCCccC-CChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEE
Confidence 56788888888887 4444 7778888888888888874 343 233 788888888888874 3 3577888899999
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
+++|++++. | .+..+++|+.|++++|.+++.
T Consensus 135 Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 135 IRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 999988854 4 577888899999999888753
No 104
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.41 E-value=8.3e-13 Score=103.25 Aligned_cols=102 Identities=23% Similarity=0.396 Sum_probs=50.5
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++ . +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+++|++|+
T Consensus 85 ~~L~~L~L~~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~ 157 (308)
T 1h6u_A 85 TKITELELSGNPLK-NVS-A-IAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLS 157 (308)
T ss_dssp CSCCEEECCSCCCS-CCG-G-GTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEE
T ss_pred CCCCEEEccCCcCC-Cch-h-hcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEE
Confidence 45666666666665 333 2 5555666666666665553 222 45555555555555555432 21 44444555555
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|++++ ++. +..+++|+.|++++|.++
T Consensus 158 l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 158 IGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 55554442 222 444444444444444443
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.40 E-value=8.8e-13 Score=104.21 Aligned_cols=108 Identities=26% Similarity=0.395 Sum_probs=82.8
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 221 ~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 221 TRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLF 293 (347)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred CcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEE
Confidence 56778888888777 4433 6778888888888888874 3 3577888888888888888743 3467788888888
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|.+++..|..+..+++|+.|++++|++++..|
T Consensus 294 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 294 LNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp CCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 88888887777778888888888888888875443
No 106
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=2.8e-13 Score=112.29 Aligned_cols=107 Identities=22% Similarity=0.211 Sum_probs=93.6
Q ss_pred CCCEEEEEcCCCCcccccCCCcCC-CCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCe
Q 041920 75 EGSIILIDLQESNIKGELGRLNFS-CFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVG 153 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 153 (193)
..+++.|++++|.+.+..+.. +. .+++|++|++++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~-l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~ 218 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAE-LAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGG-GGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSE
T ss_pred CCCCCEEECCCCCCCCcChHH-HhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccE
Confidence 368999999999999777766 54 799999999999999865 32 4568999999999999995 5556889999999
Q ss_pred eecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 154 LDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 154 L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred EEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 9999999995 6778999999999999999987
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.40 E-value=1.4e-12 Score=101.16 Aligned_cols=104 Identities=25% Similarity=0.419 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+.+ ++ . +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..| +..+++|++|
T Consensus 111 l~~L~~L~L~~n~i~~-~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISD-IN-G-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp CTTCCEEECTTSCCCC-CG-G-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCC-Ch-h-hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 3689999999999984 53 3 88999999999999999864 468999999999999999996544 8899999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
++++|.+++ +|. +..+++|+.|++++|+++.
T Consensus 184 ~L~~N~i~~-l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 184 YLSKNHISD-LRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ECCSSCCCB-CGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ECCCCcCCC-Chh-hccCCCCCEEECcCCcccC
Confidence 999999985 554 8899999999999999863
No 108
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=1.5e-12 Score=101.75 Aligned_cols=102 Identities=24% Similarity=0.433 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+. .++. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 63 ~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 34555555555555 3332 4555555555555555553 22 35555555555555555553 222 45555555555
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+++|.+++. +. +..+++|++|++++|.++
T Consensus 136 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence 555555532 22 455555555555555554
No 109
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.38 E-value=6.8e-13 Score=104.84 Aligned_cols=105 Identities=23% Similarity=0.359 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+.+ ++ . +..+++|++|++++|.+++. + .+..+++|+.|++++|.+++..|..+..+++|++|
T Consensus 242 l~~L~~L~l~~n~l~~-~~-~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISD-IN-A-VKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp CTTCCEEECCSSCCCC-CG-G-GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CCCCCEEECCCCccCC-Ch-h-HhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 4689999999999984 43 3 88999999999999999854 3 58899999999999999998888889999999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++++|.+++..| +..+++|+.|++++|.++
T Consensus 317 ~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 317 FLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999997655 788999999999999885
No 110
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.8e-12 Score=93.27 Aligned_cols=88 Identities=22% Similarity=0.212 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+..+.. |..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 57899999999999554554 99999999999999999976555678999999999999999965555689999999999
Q ss_pred cccCcCCcc
Q 041920 156 LNSNNLNGI 164 (193)
Q Consensus 156 l~~n~l~~~ 164 (193)
+++|.+...
T Consensus 112 L~~N~~~c~ 120 (174)
T 2r9u_A 112 LYNNPWDCE 120 (174)
T ss_dssp CCSSCBCTT
T ss_pred eCCCCcccc
Confidence 999999844
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=1.1e-12 Score=104.16 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=87.4
Q ss_pred CCcccceeeCC----------CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCc-hhccCCCCCCE-Ee
Q 041920 64 HCKWVGIICDY----------EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIP-SQIGSLSNLKY-LG 131 (193)
Q Consensus 64 ~c~w~gv~c~~----------~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~ 131 (193)
.|.+..|.|.. ..+++.|++++|+|+ .++...|.++++|++|++++|.+.+.+| ..|.++++++. +.
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 46777888853 246899999999998 7877669999999999999999866555 45788888775 66
Q ss_pred CcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeee
Q 041920 132 LDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLEL 180 (193)
Q Consensus 132 ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 180 (193)
+..|+++...|..+..+++|++|++++|++++..+..+....++..+++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 6778898777788899999999999999887544433333333334444
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=2.9e-12 Score=98.04 Aligned_cols=104 Identities=24% Similarity=0.317 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+. .++. +.. ++|++|++++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|++|
T Consensus 84 l~~L~~L~L~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L 155 (263)
T 1xeu_A 84 LTKLEELSVNRNRLK-NLNG--IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVL 155 (263)
T ss_dssp CSSCCEEECCSSCCS-CCTT--CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEE
T ss_pred CCCCCEEECCCCccC-CcCc--ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEE
Confidence 357888888888887 4554 333 888888888888885 33 57888888888888888885 34 57778888888
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
++++|.+++. ..+..+++|+.|++++|.+++.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 8888888865 5677888888888888888743
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=1e-12 Score=110.89 Aligned_cols=101 Identities=21% Similarity=0.195 Sum_probs=89.4
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccC-CcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTI-PKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L 154 (193)
.+++.|++++|.+. .+|.. +..+++|++|++++|.+++ +| .+..+++|+.|++++|.+++.. |..++.+++|+.|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccCcEeecCccccc-ccchh-hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 57999999999999 88886 9999999999999999996 67 7999999999999999999776 9999999999999
Q ss_pred ecccCcCCccChh---hcCCCccCceeee
Q 041920 155 DLNSNNLNGIIPK---EIGSLRFLEVLEL 180 (193)
Q Consensus 155 ~l~~n~l~~~~p~---~~~~l~~L~~L~l 180 (193)
++++|.+++..|. .+..+++|+.|++
T Consensus 539 ~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999999976543 2334889998864
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=3.4e-12 Score=108.42 Aligned_cols=101 Identities=30% Similarity=0.415 Sum_probs=48.0
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+. .++ . +..+++|++|++++|.+++ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|++
T Consensus 88 ~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 88 NLGWLFLDENKIK-DLS-S-LKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp TCCEEECCSSCCC-CCT-T-STTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred CCCEEECcCCCCC-CCh-h-hccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 4555555555554 232 1 5555555555555555543 22 344455555555555555432 33444455555555
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
++|.+++..| +..+++|+.|+|++|.++
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 5555543322 444444444444444443
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=6e-13 Score=112.19 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=42.4
Q ss_pred CCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCC-------CeeecccCcCCccChhhcCCCcc
Q 041920 102 NLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNL-------VGLDLNSNNLNGIIPKEIGSLRF 174 (193)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L-------~~L~l~~n~l~~~~p~~~~~l~~ 174 (193)
+|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++++|+++ .+|..+..+++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~ 231 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDP 231 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCC
Confidence 34444444444442 333 22 45555555555555 4444 332 44 66666666666 45665666777
Q ss_pred CceeeeeccccCccCC
Q 041920 175 LEVLELSSNNLNGELP 190 (193)
Q Consensus 175 L~~L~l~~N~l~g~iP 190 (193)
|+.|++++|+++|.+|
T Consensus 232 L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 232 TCTIILEDNPLSSRIR 247 (571)
T ss_dssp TEEEECCSSSCCHHHH
T ss_pred CCEEEeeCCcCCCcCH
Confidence 7777777777766554
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=4e-12 Score=107.94 Aligned_cols=105 Identities=25% Similarity=0.439 Sum_probs=92.1
Q ss_pred CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCee
Q 041920 75 EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
..+++.|++++|.+. .++. +..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|
T Consensus 108 l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 108 LKKLKSLSLEHNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp CTTCCEEECTTSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCCEEEecCCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 367999999999998 4543 88999999999999999864 568999999999999999996655 8899999999
Q ss_pred ecccCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
++++|.+++ +| .+..+++|+.|++++|++++.
T Consensus 181 ~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 999999996 44 588999999999999999753
No 117
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.33 E-value=4.7e-12 Score=104.17 Aligned_cols=102 Identities=24% Similarity=0.430 Sum_probs=55.5
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+.+ ++. +..+++|++|++++|.+++..| +..+++|+.|++++|.+++. ..+..+++|+.|++
T Consensus 288 ~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 360 (466)
T 1o6v_A 288 ALTNLELNENQLED-ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSA 360 (466)
T ss_dssp TCSEEECCSSCCSC-CGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEEC
T ss_pred ccCeEEcCCCcccC-chh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeC
Confidence 34444444444442 221 3445555555555555554333 44555555555555555532 34556666666666
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
++|++++..| +..+++|+.|++++|.+++
T Consensus 361 ~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 361 GHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6666665544 5666667777777666664
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.32 E-value=5.7e-12 Score=103.64 Aligned_cols=105 Identities=26% Similarity=0.409 Sum_probs=63.2
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
+++.|++++|.+.+ ++. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.|++
T Consensus 266 ~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 266 KLTELKLGANQISN-ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp TCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCEEECCCCccCc-ccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 44555555555542 222 4555566666666666654322 5566666666666666664433 456667777777
Q ss_pred ccCcCCccChhhcCCCccCceeeeeccccCccCC
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
++|.+++. ..+.++++|+.|++++|++++..|
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 77777643 356677778888888887776544
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=4.5e-15 Score=108.94 Aligned_cols=109 Identities=24% Similarity=0.267 Sum_probs=92.6
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+ ++ . +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~-~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-S-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEESC-CC-C-HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCCcc-cc-c-cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 578999999999984 76 4 889999999999999998 577777778999999999999985 45 577889999999
Q ss_pred cccCcCCccCh-hhcCCCccCceeeeeccccCccCC
Q 041920 156 LNSNNLNGIIP-KEIGSLRFLEVLELSSNNLNGELP 190 (193)
Q Consensus 156 l~~n~l~~~~p-~~~~~l~~L~~L~l~~N~l~g~iP 190 (193)
+++|++++..+ ..+..+++|++|++++|++++.+|
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 99999985322 468899999999999999876654
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.31 E-value=8.8e-13 Score=103.71 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=57.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCcc-CchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGS-IPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 455555555555533332 34455666666666655533 444455555666666666655555555555555566666
Q ss_pred cccC-cCCcc-ChhhcCCCccCceeeeecc-ccC
Q 041920 156 LNSN-NLNGI-IPKEIGSLRFLEVLELSSN-NLN 186 (193)
Q Consensus 156 l~~n-~l~~~-~p~~~~~l~~L~~L~l~~N-~l~ 186 (193)
+++| .+++. +|..+.++++|++|++++| .++
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 6555 44432 3444555555555555555 444
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.30 E-value=1.2e-11 Score=101.79 Aligned_cols=101 Identities=27% Similarity=0.289 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
.+++.|++++|.+.+ ++ +..+++|++|++++|.+++. + +..+++|++|++++|.+++ +| ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 345555555555553 21 45555555555555555532 2 4555555555555555553 22 45555555666
Q ss_pred cccCcCCccChhhcCCCccCceeeeeccccCccC
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNLNGEL 189 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~i 189 (193)
+++|++++. + +.++++|+.|++++|...|.+
T Consensus 134 l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 134 CARNTLTEI-D--VSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp CTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC
T ss_pred CCCCcccee-c--cccCCcCCEEECCCCCccccc
Confidence 655555542 2 455556666666665444433
No 122
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=8e-12 Score=98.88 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=75.8
Q ss_pred cEEEcccC-ccCccCchhccCCCCCCEEeCcC-CCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeeee
Q 041920 104 QYLDLWNN-SLSGSIPSQIGSLSNLKYLGLDQ-NNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLELS 181 (193)
Q Consensus 104 ~~L~l~~n-~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 181 (193)
..++.+++ .++ .+|. +..+++|+.|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5787 99999999999996 99997777889999999999999999999888899999999999999
Q ss_pred ccccCccCCC
Q 041920 182 SNNLNGELPI 191 (193)
Q Consensus 182 ~N~l~g~iP~ 191 (193)
+|.|++ +|.
T Consensus 89 ~N~l~~-~~~ 97 (347)
T 2ifg_A 89 FNALES-LSW 97 (347)
T ss_dssp SSCCSC-CCS
T ss_pred CCccce-eCH
Confidence 999984 554
No 123
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.29 E-value=3.7e-11 Score=98.82 Aligned_cols=83 Identities=27% Similarity=0.261 Sum_probs=52.9
Q ss_pred CCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCc
Q 041920 97 FSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLE 176 (193)
Q Consensus 97 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 176 (193)
+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 4555666666666666664 33 55666666666666666643 25666777777777777775 44 66677777
Q ss_pred eeeeeccccCcc
Q 041920 177 VLELSSNNLNGE 188 (193)
Q Consensus 177 ~L~l~~N~l~g~ 188 (193)
.|++++|.+++.
T Consensus 237 ~L~l~~N~l~~~ 248 (457)
T 3bz5_A 237 YFDCSVNPLTEL 248 (457)
T ss_dssp EEECCSSCCSCC
T ss_pred EEEeeCCcCCCc
Confidence 777777777653
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.27 E-value=7e-13 Score=106.51 Aligned_cols=113 Identities=23% Similarity=0.282 Sum_probs=82.8
Q ss_pred CCEEEEEcCCCCcccc-----cCCCcCCCCCCCcEEEcccCccC----ccCchhccCCCCCCEEeCcCCCCCcc----CC
Q 041920 76 GSIILIDLQESNIKGE-----LGRLNFSCFPNLQYLDLWNNSLS----GSIPSQIGSLSNLKYLGLDQNNLTGT----IP 142 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~-----l~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l~~L~~L~ls~n~l~~~----~p 142 (193)
.+++.|++++|++... ++.. +..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ++
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 4677888888877621 2223 677888888888888875 45666777888888888888888754 44
Q ss_pred ccc--CCCCCCCeeecccCcCCc----cChhhc-CCCccCceeeeeccccCccC
Q 041920 143 KEI--GSLRNLVGLDLNSNNLNG----IIPKEI-GSLRFLEVLELSSNNLNGEL 189 (193)
Q Consensus 143 ~~~--~~l~~L~~L~l~~n~l~~----~~p~~~-~~l~~L~~L~l~~N~l~g~i 189 (193)
..+ +.+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 555 347888888888888886 367666 55788888888888887654
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.27 E-value=1.4e-14 Score=106.34 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=87.9
Q ss_pred CEEEEEcCCCCcccccCC------CcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCC
Q 041920 77 SIILIDLQESNIKGELGR------LNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRN 150 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~ 150 (193)
.++.++++.+.+.+.++. . +..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 445555555566555554 4 8889999999999999986 66 7889999999999999998 77887777899
Q ss_pred CCeeecccCcCCccChhhcCCCccCceeeeeccccCc
Q 041920 151 LVGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 151 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
|++|++++|++++ +| .+..+++|++|++++|.+++
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~ 129 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN 129 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence 9999999999995 56 68889999999999999873
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.26 E-value=8.2e-12 Score=102.65 Aligned_cols=84 Identities=30% Similarity=0.446 Sum_probs=45.2
Q ss_pred CCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCc--cChhhcCCC------
Q 041920 101 PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNG--IIPKEIGSL------ 172 (193)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~l------ 172 (193)
++|++|++++|.+++ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ .+|..+..+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 467777777777764 4432 467788888888877 4565 36788888888888887 677777666
Q ss_pred -------ccCceeeeeccccCc--cCCCC
Q 041920 173 -------RFLEVLELSSNNLNG--ELPIN 192 (193)
Q Consensus 173 -------~~L~~L~l~~N~l~g--~iP~~ 192 (193)
++|+.|++++|+++| .+|.+
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -----------------------------
T ss_pred cccccccCcCCEEECCCCcCCccccchhh
Confidence 778888888888886 77765
No 127
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=1.2e-11 Score=105.40 Aligned_cols=82 Identities=27% Similarity=0.310 Sum_probs=66.1
Q ss_pred CCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeee
Q 041920 101 PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLEL 180 (193)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 180 (193)
++|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+.++++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 667788888887774 45 45578888888888888 5665 5678999999999998 77888999999999999
Q ss_pred eccccCccCCC
Q 041920 181 SSNNLNGELPI 191 (193)
Q Consensus 181 ~~N~l~g~iP~ 191 (193)
++|+++|.+|.
T Consensus 292 ~~N~l~~~~~~ 302 (622)
T 3g06_A 292 EGNPLSERTLQ 302 (622)
T ss_dssp CSCCCCHHHHH
T ss_pred cCCCCCCcCHH
Confidence 99999876553
No 128
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.26 E-value=2.2e-11 Score=96.63 Aligned_cols=105 Identities=21% Similarity=0.180 Sum_probs=88.3
Q ss_pred EEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCC-cccCCCCCCCe-eecc
Q 041920 80 LIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIP-KEIGSLRNLVG-LDLN 157 (193)
Q Consensus 80 ~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~-L~l~ 157 (193)
.++.++++++ ++|.. + .+++++|++++|+++...+..|.++++|++|++++|.+.+.+| ..|.+++++++ +.+.
T Consensus 13 ~v~C~~~~Lt-~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 5788899998 88876 4 4689999999999995555679999999999999999876665 46778888775 5667
Q ss_pred cCcCCccChhhcCCCccCceeeeeccccCcc
Q 041920 158 SNNLNGIIPKEIGSLRFLEVLELSSNNLNGE 188 (193)
Q Consensus 158 ~n~l~~~~p~~~~~l~~L~~L~l~~N~l~g~ 188 (193)
+|+++...|..|..+++|++|++++|.+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~ 119 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHL 119 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred CCcccccCchhhhhccccccccccccccccC
Confidence 8999977788899999999999999999843
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.25 E-value=4.8e-12 Score=107.74 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=57.4
Q ss_pred CCCCCCCCCcccceeeC------C-CCCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCE
Q 041920 57 IPHNTSDHCKWVGIICD------Y-EGSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKY 129 (193)
Q Consensus 57 ~~~~~~~~c~w~gv~c~------~-~~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 129 (193)
.|....++|.|.|..+. . ...++.|++++|+++ .+|.. +. ++|++|++++|.++ .+|. .+++|++
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~-l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~ 85 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLT-SLPA---LPPELRT 85 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSC-CC--TTCSEEEECSCCCS-CCCC---CCTTCCE
T ss_pred HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChh-hC--CCCcEEEecCCCCC-CCCC---cCCCCCE
Confidence 34445566666442211 0 123556666666665 55543 32 45555565555555 3332 3455555
Q ss_pred EeCcCCCCCccCCcccCCCCCCCeeecccCcCCc-------------------cChhhcCCCccCceeeeeccccC
Q 041920 130 LGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNG-------------------IIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 130 L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-------------------~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
|++++|.++ .+|. .+++|++|++++|.+++ .+|.. +++|++|++++|.++
T Consensus 86 L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 86 LEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA 154 (622)
T ss_dssp EEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred EEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC
Confidence 555555555 3333 33444444444444442 23321 356667777777665
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.24 E-value=3.7e-13 Score=105.84 Aligned_cols=107 Identities=23% Similarity=0.228 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCCcccc-cCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCC-CCCcc-CCcccCCCCCCC
Q 041920 76 GSIILIDLQESNIKGE-LGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQN-NLTGT-IPKEIGSLRNLV 152 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~-l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~~L~ 152 (193)
.+++.|++++|.+.+. ++.. +..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHH-HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCEEEccCCCcCHHHHHHH-HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 4556666666665543 3333 555566666666666555445555555556666666655 44431 333344455555
Q ss_pred eeecccC-cCCcc-ChhhcCCCc-cCceeeeecc
Q 041920 153 GLDLNSN-NLNGI-IPKEIGSLR-FLEVLELSSN 183 (193)
Q Consensus 153 ~L~l~~n-~l~~~-~p~~~~~l~-~L~~L~l~~N 183 (193)
+|++++| .+++. ++..+..++ +|++|++++|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 5555555 44432 333344444 4444444444
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.20 E-value=1.2e-10 Score=95.73 Aligned_cols=79 Identities=32% Similarity=0.510 Sum_probs=45.6
Q ss_pred CCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCccCceeee
Q 041920 101 PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLRFLEVLEL 180 (193)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l 180 (193)
++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..+ .+|++|++++|++++ +| .+.++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456666666666653 44 35666666666666666653 44332 356666666666654 44 3556666666666
Q ss_pred eccccCc
Q 041920 181 SSNNLNG 187 (193)
Q Consensus 181 ~~N~l~g 187 (193)
++|.+++
T Consensus 203 ~~N~l~~ 209 (454)
T 1jl5_A 203 DNNSLKK 209 (454)
T ss_dssp CSSCCSS
T ss_pred CCCcCCc
Confidence 6666553
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=3.5e-12 Score=101.74 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=66.7
Q ss_pred CEEEEEcCCCCcccccCCCcCCCC-----CCCcEEEcccCccCccCchh----ccCC-CCCCEEeCcCCCCCccCCcc--
Q 041920 77 SIILIDLQESNIKGELGRLNFSCF-----PNLQYLDLWNNSLSGSIPSQ----IGSL-SNLKYLGLDQNNLTGTIPKE-- 144 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l-----~~L~~L~l~~n~l~~~~p~~----~~~l-~~L~~L~ls~n~l~~~~p~~-- 144 (193)
+++.|++++|.+.+..+.. +..+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDE-LVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHH-HHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence 5777777777776443332 3332 67777777777776554443 2333 67777777777776444333
Q ss_pred --cCC-CCCCCeeecccCcCCccC----hhhcCCCc-cCceeeeeccccCcc
Q 041920 145 --IGS-LRNLVGLDLNSNNLNGII----PKEIGSLR-FLEVLELSSNNLNGE 188 (193)
Q Consensus 145 --~~~-l~~L~~L~l~~n~l~~~~----p~~~~~l~-~L~~L~l~~N~l~g~ 188 (193)
+.. .++|++|++++|.+++.. +..+...+ +|+.|++++|.+++.
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASK 182 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchh
Confidence 223 247777777777776433 33344444 777777777777644
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.18 E-value=3.2e-12 Score=102.60 Aligned_cols=112 Identities=20% Similarity=0.211 Sum_probs=79.6
Q ss_pred CCEEEEEcCCCCcc-cccCC--CcCCCCCCCcEEEcccCccCc-----cCchhccCCCCCCEEeCcCCCCC----ccCCc
Q 041920 76 GSIILIDLQESNIK-GELGR--LNFSCFPNLQYLDLWNNSLSG-----SIPSQIGSLSNLKYLGLDQNNLT----GTIPK 143 (193)
Q Consensus 76 ~~l~~L~l~~n~l~-~~l~~--~~~~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~L~ls~n~l~----~~~p~ 143 (193)
.+++.|++++|++. +.++. ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46777777777776 23331 125567788888888888762 23336677888888888888885 45677
Q ss_pred ccCCCCCCCeeecccCcCCcc----Chhhc--CCCccCceeeeeccccCc
Q 041920 144 EIGSLRNLVGLDLNSNNLNGI----IPKEI--GSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 144 ~~~~l~~L~~L~l~~n~l~~~----~p~~~--~~l~~L~~L~l~~N~l~g 187 (193)
.+..+++|++|++++|.+++. +|..+ +++++|++|++++|.+++
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 777788888888888888765 45555 347888888888888875
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.17 E-value=6.4e-12 Score=100.18 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCCCcccccC----CCcCCCCC-CCcEEEcccCccCccCchhccCC-----CCCCEEeCcCCCCCccCCcc
Q 041920 75 EGSIILIDLQESNIKGELG----RLNFSCFP-NLQYLDLWNNSLSGSIPSQIGSL-----SNLKYLGLDQNNLTGTIPKE 144 (193)
Q Consensus 75 ~~~l~~L~l~~n~l~~~l~----~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~L~ls~n~l~~~~p~~ 144 (193)
..+++.|++++|.+.+..+ .. +..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3569999999999985433 33 77888 89999999999987777666664 89999999999998666553
Q ss_pred ----cCCC-CCCCeeecccCcCCccChhhc----CC-CccCceeeeeccccCc
Q 041920 145 ----IGSL-RNLVGLDLNSNNLNGIIPKEI----GS-LRFLEVLELSSNNLNG 187 (193)
Q Consensus 145 ----~~~l-~~L~~L~l~~n~l~~~~p~~~----~~-l~~L~~L~l~~N~l~g 187 (193)
+..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 3344 799999999999987766543 34 3699999999999874
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=9.9e-12 Score=101.60 Aligned_cols=111 Identities=20% Similarity=0.123 Sum_probs=70.0
Q ss_pred CEEEEEcCCCCcccccCC----CcCCCCCCCcEEEcccCccCcc----CchhccCCCCCCEEeCcCCCCCccCCcccCC-
Q 041920 77 SIILIDLQESNIKGELGR----LNFSCFPNLQYLDLWNNSLSGS----IPSQIGSLSNLKYLGLDQNNLTGTIPKEIGS- 147 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~----~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~- 147 (193)
+++.|++++|.+.+..+. ......++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 455555555555432111 1011224666666666666543 3444556678888888888877543333321
Q ss_pred ----CCCCCeeecccCcCCc----cChhhcCCCccCceeeeeccccCc
Q 041920 148 ----LRNLVGLDLNSNNLNG----IIPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 148 ----l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
.++|++|++++|.+++ .+|..+..+++|++|++++|++++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 5688888888888875 567777778888888888888764
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.95 E-value=5.7e-11 Score=97.07 Aligned_cols=111 Identities=22% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCccc----ccCCCcCCCCCCCcEEEcccCccCccCchhc-cCCC----CCCEEeCcCCCCCc----cCC
Q 041920 76 GSIILIDLQESNIKG----ELGRLNFSCFPNLQYLDLWNNSLSGSIPSQI-GSLS----NLKYLGLDQNNLTG----TIP 142 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~----~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~----~L~~L~ls~n~l~~----~~p 142 (193)
.+++.|++++|++.+ .++.. +..+++|++|++++|.+++..+..+ ..++ +|++|++++|.++. .++
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 356677777777663 22333 5566777777777777654333222 2333 57777777777763 346
Q ss_pred cccCCCCCCCeeecccCcCCccChhhc-----CCCccCceeeeeccccCc
Q 041920 143 KEIGSLRNLVGLDLNSNNLNGIIPKEI-----GSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 143 ~~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~N~l~g 187 (193)
..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 666777777777777777764333222 224567777777777664
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=1.8e-10 Score=92.33 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=65.0
Q ss_pred CEEEEEcCCCCcccccCCC---cC-CCCCCCcEEEcccCccCcc----CchhccCCCCCCEEeCcCCCCCcc----CCcc
Q 041920 77 SIILIDLQESNIKGELGRL---NF-SCFPNLQYLDLWNNSLSGS----IPSQIGSLSNLKYLGLDQNNLTGT----IPKE 144 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~---~~-~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~ 144 (193)
+++.|++++|.+++..... .+ ...++|++|++++|.++.. ++..+...++|++|++++|.+++. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 4555555555554321111 01 2346677777777776532 233345667777777777777642 2344
Q ss_pred cCCCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeeccccC
Q 041920 145 IGSLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 145 ~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+...++|++|++++|.+++. ++..+...++|++|++++|.++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 55566777888877777642 3334555677888888887775
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.88 E-value=1.7e-10 Score=92.49 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=84.8
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhc-----cCCCCCCEEeCcCCCCCcc----CCcccC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQI-----GSLSNLKYLGLDQNNLTGT----IPKEIG 146 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~~----~p~~~~ 146 (193)
.+++.|++++|.+++.........+++|++|++++|.++......+ ...++|+.|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 5899999999998754333223446789999999999875433333 2467899999999999742 344456
Q ss_pred CCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeeccccCc
Q 041920 147 SLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 147 ~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~g 187 (193)
..++|++|++++|.+++. ++..+...++|+.|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 788999999999999753 35567778899999999999863
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=6.6e-09 Score=81.63 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=85.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCC-EEeCcCCCCCccCCcccCCCCCCCee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLK-YLGLDQNNLTGTIPKEIGSLRNLVGL 154 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L 154 (193)
.+++.+++++|++. .++...|.++++|+++++.+| ++..-+..|.++++|+ .+++.+ .++...+..|.++++|+.+
T Consensus 226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 57889999998888 787777999999999999887 7655567789999999 999988 6765666888899999999
Q ss_pred ecccCcCCccChhhcCCCccCceeee
Q 041920 155 DLNSNNLNGIIPKEIGSLRFLEVLEL 180 (193)
Q Consensus 155 ~l~~n~l~~~~p~~~~~l~~L~~L~l 180 (193)
++++|.++..-+..|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999998666678888999988763
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=7.5e-09 Score=79.15 Aligned_cols=64 Identities=33% Similarity=0.457 Sum_probs=29.3
Q ss_pred CCCCcEEEcccCccCc--cCchhccCCCCCCEEeCcCCCCCccCCcccCCCC--CCCeeecccCcCCccC
Q 041920 100 FPNLQYLDLWNNSLSG--SIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLR--NLVGLDLNSNNLNGII 165 (193)
Q Consensus 100 l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~l~~n~l~~~~ 165 (193)
+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. +|++|++++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 4455555555555543 2223334455555555555555432 1122222 5555555555554433
No 141
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=2.4e-09 Score=77.58 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCC-Ccccc----cCCCcCCCCCCCcEEEcccCccCcc----CchhccCCCCCCEEeCcCCCCCcc----C
Q 041920 75 EGSIILIDLQES-NIKGE----LGRLNFSCFPNLQYLDLWNNSLSGS----IPSQIGSLSNLKYLGLDQNNLTGT----I 141 (193)
Q Consensus 75 ~~~l~~L~l~~n-~l~~~----l~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~ 141 (193)
...++.|++++| .+... +... +...++|++|++++|.+... +...+...++|++|++++|.+.+. +
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 467999999999 88743 3333 66678999999999998642 234455668899999999999853 3
Q ss_pred CcccCCCCCCCeeec--ccCcCCcc----ChhhcCCCccCceeeeeccccC
Q 041920 142 PKEIGSLRNLVGLDL--NSNNLNGI----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 142 p~~~~~l~~L~~L~l--~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
...+...++|++|++ ++|.++.. +...+...++|+.|++++|.+.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 456677789999999 88999754 3445667789999999999874
No 142
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=8.2e-10 Score=84.50 Aligned_cols=68 Identities=26% Similarity=0.324 Sum_probs=55.8
Q ss_pred cCCCCCCEEeCcCCCCCc--cCCcccCCCCCCCeeecccCcCCccChhhcCCCc--cCceeeeeccccCccCCC
Q 041920 122 GSLSNLKYLGLDQNNLTG--TIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLR--FLEVLELSSNNLNGELPI 191 (193)
Q Consensus 122 ~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~l~~N~l~g~iP~ 191 (193)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|++++|++.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 467899999999999997 4456667899999999999999865 3344444 999999999999987763
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.64 E-value=3.3e-09 Score=89.23 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=65.9
Q ss_pred CCCCCCCcEEEcccCc--cCccCchhc-cCCCCCCEEeCcCCCCCc-cCCcccCCCCCCCeeecccCcCCcc-ChhhcCC
Q 041920 97 FSCFPNLQYLDLWNNS--LSGSIPSQI-GSLSNLKYLGLDQNNLTG-TIPKEIGSLRNLVGLDLNSNNLNGI-IPKEIGS 171 (193)
Q Consensus 97 ~~~l~~L~~L~l~~n~--l~~~~p~~~-~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~ 171 (193)
+.++++|++|++++|. +++..+..+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 3456777777776433 443333333 347889999999999875 3345567789999999999998754 4445567
Q ss_pred CccCceeeeeccccCcc
Q 041920 172 LRFLEVLELSSNNLNGE 188 (193)
Q Consensus 172 l~~L~~L~l~~N~l~g~ 188 (193)
+++|++|++++|++++.
T Consensus 512 l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CSSCCEEEEESCBCCTT
T ss_pred cCccCeeECcCCcCCHH
Confidence 89999999999998753
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=2.2e-07 Score=72.86 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=60.7
Q ss_pred CCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCC-eeecccCcCCccChhhcCCCccCcee
Q 041920 100 FPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLV-GLDLNSNNLNGIIPKEIGSLRFLEVL 178 (193)
Q Consensus 100 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~L 178 (193)
+++|+++++++|.++...+..|.++++|+.+++.+| ++...+..|.++.+|+ .+++.+ .++..-+..|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 456777777777776544556777777777777776 5545556677777787 887776 6664556678888888888
Q ss_pred eeeccccC
Q 041920 179 ELSSNNLN 186 (193)
Q Consensus 179 ~l~~N~l~ 186 (193)
++++|.++
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 88877776
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.37 E-value=2.4e-07 Score=77.81 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCcccc----cCCCcCCCCCCCcEEEcccCccCc----cCchhccCCCCCCEEeCcCCCCC
Q 041920 76 GSIILIDLQESNIKGE----LGRLNFSCFPNLQYLDLWNNSLSG----SIPSQIGSLSNLKYLGLDQNNLT 138 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~----l~~~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~ 138 (193)
.+++.|++++|.+.+. ++.. ...+++|++|++++|.+++ .++..+..+++|+.|++++|.+.
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHH-HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred CCCCEEECccccccCcchhHHHHH-HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 4566667766665432 1111 3345566666666665542 22223344556666666655543
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.32 E-value=3.5e-08 Score=82.90 Aligned_cols=88 Identities=15% Similarity=0.154 Sum_probs=52.0
Q ss_pred CCCCCCcEEEcccCccCccCchhccC-CCCCCEEeCcCCCCCccCCccc-CCCCCCCeeecccCcCCccChh-hcCCCcc
Q 041920 98 SCFPNLQYLDLWNNSLSGSIPSQIGS-LSNLKYLGLDQNNLTGTIPKEI-GSLRNLVGLDLNSNNLNGIIPK-EIGSLRF 174 (193)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~~~~~-l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~ 174 (193)
..+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3445666666654 444333333333 6677777777777764433333 4567777788877777543332 3345677
Q ss_pred CceeeeeccccC
Q 041920 175 LEVLELSSNNLN 186 (193)
Q Consensus 175 L~~L~l~~N~l~ 186 (193)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 888888777664
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=2.5e-07 Score=66.84 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCCCCCcEEEcccC-ccCcc----CchhccCCCCCCEEeCcCCCCCcc----CCcccCCCCCCCeeecccCcCCcc---
Q 041920 97 FSCFPNLQYLDLWNN-SLSGS----IPSQIGSLSNLKYLGLDQNNLTGT----IPKEIGSLRNLVGLDLNSNNLNGI--- 164 (193)
Q Consensus 97 ~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~--- 164 (193)
+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 677899999999999 88632 334566778999999999999753 233445568899999999999854
Q ss_pred -ChhhcCCCccCceeee--eccccC
Q 041920 165 -IPKEIGSLRFLEVLEL--SSNNLN 186 (193)
Q Consensus 165 -~p~~~~~l~~L~~L~l--~~N~l~ 186 (193)
+...+...++|++|++ ++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 4556778889999999 889886
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=4.2e-07 Score=65.05 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCc-cCccCchhccCC----CCCCEEeCcCCC-CCccCCcccCCCC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNS-LSGSIPSQIGSL----SNLKYLGLDQNN-LTGTIPKEIGSLR 149 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~L~ls~n~-l~~~~p~~~~~l~ 149 (193)
-.++.||++++.+++.--.. +..+++|++|+|++|. ++..--..+..+ ++|+.|+++++. +++..-..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 46888888888777544333 6778888888888875 554333344443 367888888764 6644334556677
Q ss_pred CCCeeecccCc
Q 041920 150 NLVGLDLNSNN 160 (193)
Q Consensus 150 ~L~~L~l~~n~ 160 (193)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888887764
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.21 E-value=6e-08 Score=81.47 Aligned_cols=110 Identities=14% Similarity=0.100 Sum_probs=68.1
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcc--c----CccCcc-----CchhccCCCCCCEEeCcCCCCCccCCccc
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLW--N----NSLSGS-----IPSQIGSLSNLKYLGLDQNNLTGTIPKEI 145 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~--~----n~l~~~-----~p~~~~~l~~L~~L~ls~n~l~~~~p~~~ 145 (193)
+++.|.+..+++++.........+++|++|+++ + +.++.. ++.-+..+++|+.|++++ .+++..+..+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 455555555555433222211246777788777 3 344421 111245667788888866 5554444444
Q ss_pred CC-CCCCCeeecccCcCCccChhhc-CCCccCceeeeeccccCc
Q 041920 146 GS-LRNLVGLDLNSNNLNGIIPKEI-GSLRFLEVLELSSNNLNG 187 (193)
Q Consensus 146 ~~-l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~l~~N~l~g 187 (193)
.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 44 7889999999999876544444 568999999999998853
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.18 E-value=9.1e-06 Score=65.61 Aligned_cols=105 Identities=11% Similarity=0.183 Sum_probs=73.9
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccC-----ccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCC
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS-----GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNL 151 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L 151 (193)
.++.+.+. +++. .++...|.++++|+.+++.+|.+. ...+..|.++++|+.+++.+ .++......|.++.+|
T Consensus 249 ~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L 325 (401)
T 4fdw_A 249 GITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV 325 (401)
T ss_dssp CCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred CccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence 34555552 3344 555556888888888888877654 23456688888888888884 4664555678888889
Q ss_pred CeeecccCcCCccChhhcCCCccCceeeeeccccC
Q 041920 152 VGLDLNSNNLNGIIPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 152 ~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+.+++..| ++..-+..|.++ +|+.+++.+|.+.
T Consensus 326 ~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 326 TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 99988554 654556678888 8999999888665
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1e-06 Score=63.05 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=65.7
Q ss_pred CCCcEEEcccCccCccCchhccCCCCCCEEeCcCCC-CCccCCcccCCC----CCCCeeecccCc-CCccChhhcCCCcc
Q 041920 101 PNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNN-LTGTIPKEIGSL----RNLVGLDLNSNN-LNGIIPKEIGSLRF 174 (193)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~ 174 (193)
..|+.||++++.++..--..+..+++|+.|+|+++. +++..-..+..+ ++|++|++++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999876545567899999999999995 765433445543 479999999985 87543345778999
Q ss_pred Cceeeeeccc
Q 041920 175 LEVLELSSNN 184 (193)
Q Consensus 175 L~~L~l~~N~ 184 (193)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999984
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.08 E-value=2.8e-07 Score=73.57 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=16.8
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccC
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLS 114 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~ 114 (193)
.+++.|+++++.-. .++. +. +++|++|++..+.++
T Consensus 172 P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISGGLP 206 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECSBCC
T ss_pred CCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecCCCC
Confidence 46777777665211 2222 21 445555555554443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.87 E-value=1.1e-05 Score=64.30 Aligned_cols=110 Identities=16% Similarity=0.290 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCcccccCCCcC--CCCCCCcEEEccc--CccCcc-----Cchhc--cCCCCCCEEeCcCCCCCccCCcc
Q 041920 76 GSIILIDLQESNIKGELGRLNF--SCFPNLQYLDLWN--NSLSGS-----IPSQI--GSLSNLKYLGLDQNNLTGTIPKE 144 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~--~~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~~~~p~~ 144 (193)
.+++.|++..+++....... + ..+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 46778888777765432221 2 2578888888753 211111 11112 24678888888888876433222
Q ss_pred c---CCCCCCCeeecccCcCCcc----ChhhcCCCccCceeeeeccccC
Q 041920 145 I---GSLRNLVGLDLNSNNLNGI----IPKEIGSLRFLEVLELSSNNLN 186 (193)
Q Consensus 145 ~---~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~N~l~ 186 (193)
+ ..+++|++|+++.|.+++. ++..+.++++|+.|++++|.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 2467888888888888753 3334455688888888888775
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.76 E-value=0.00017 Score=58.19 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=7.5
Q ss_pred hccCCCCCCEEeCcC
Q 041920 120 QIGSLSNLKYLGLDQ 134 (193)
Q Consensus 120 ~~~~l~~L~~L~ls~ 134 (193)
.|.++++|+.+++..
T Consensus 221 aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCCEECCT
T ss_pred HhhCCCCCCEEecCC
Confidence 344555555555543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00018 Score=48.73 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=39.0
Q ss_pred EEEcccCccC-ccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCC
Q 041920 105 YLDLWNNSLS-GSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLN 162 (193)
Q Consensus 105 ~L~l~~n~l~-~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 162 (193)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5777777775 2455432 246888888888888544456677888888888888764
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=5.7e-05 Score=54.93 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCC-Ccccc----cCCCcCCCCCCCcEEEcccCccCcc----CchhccCCCCCCEEeCcCCCCCccC----
Q 041920 75 EGSIILIDLQES-NIKGE----LGRLNFSCFPNLQYLDLWNNSLSGS----IPSQIGSLSNLKYLGLDQNNLTGTI---- 141 (193)
Q Consensus 75 ~~~l~~L~l~~n-~l~~~----l~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~---- 141 (193)
...++.|+++++ .+..+ +... +..-+.|++|+|++|.+... +...+..=+.|+.|+|+.|.|.+..
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 467899999985 77632 2232 55667899999999998632 2233445578999999999998532
Q ss_pred CcccCCCCCCCeeecccCc---CCcc----ChhhcCCCccCceeeeecccc
Q 041920 142 PKEIGSLRNLVGLDLNSNN---LNGI----IPKEIGSLRFLEVLELSSNNL 185 (193)
Q Consensus 142 p~~~~~l~~L~~L~l~~n~---l~~~----~p~~~~~l~~L~~L~l~~N~l 185 (193)
-..+..-..|++|++++|. +... +...+...+.|+.|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2345556789999998653 3321 334566778899999987754
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.27 E-value=0.0026 Score=50.81 Aligned_cols=102 Identities=16% Similarity=0.251 Sum_probs=68.0
Q ss_pred EEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecc
Q 041920 78 IILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLN 157 (193)
Q Consensus 78 l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~ 157 (193)
++.+.+..+.. .+....|.+.+.|+.+.+. +.++..-...|.++.+|+.+++..+ ++......|.++.+|+.+.+.
T Consensus 267 L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 267 LASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp CCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 44455543322 3444457777788888775 3444344456788888888888764 553445678888889998886
Q ss_pred cCcCCccChhhcCCCccCceeeeeccc
Q 041920 158 SNNLNGIIPKEIGSLRFLEVLELSSNN 184 (193)
Q Consensus 158 ~n~l~~~~p~~~~~l~~L~~L~l~~N~ 184 (193)
.+ ++..-...|.++.+|+.+++.++.
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 54 554445678888999988887753
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.24 E-value=0.0013 Score=52.02 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=65.8
Q ss_pred CEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeec
Q 041920 77 SIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDL 156 (193)
Q Consensus 77 ~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l 156 (193)
.++.+.+..+ +. .+....|.+..+|+.+.+..+ ++......|.++.+|+.+.+.++.++..-...|.++.+|+.+.+
T Consensus 241 ~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 3455555443 33 444444677777777777543 43233456777888888888887777455567788888888888
Q ss_pred ccCcCCccChhhcCCCccCceeeeec
Q 041920 157 NSNNLNGIIPKEIGSLRFLEVLELSS 182 (193)
Q Consensus 157 ~~n~l~~~~p~~~~~l~~L~~L~l~~ 182 (193)
..+ ++..-...|.++.+|+.+.+..
T Consensus 318 p~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 318 PTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred Ccc-ccEEHHHHhhCCCCCCEEEECC
Confidence 644 5433345677788888777654
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.16 E-value=0.00014 Score=52.80 Aligned_cols=87 Identities=11% Similarity=0.085 Sum_probs=64.9
Q ss_pred CCCCCCCcEEEcccC-ccCcc----CchhccCCCCCCEEeCcCCCCCccCC----cccCCCCCCCeeecccCcCCcc---
Q 041920 97 FSCFPNLQYLDLWNN-SLSGS----IPSQIGSLSNLKYLGLDQNNLTGTIP----KEIGSLRNLVGLDLNSNNLNGI--- 164 (193)
Q Consensus 97 ~~~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~--- 164 (193)
+.+-+.|++|+|++| .+... +...+..-..|+.|+|++|.+.+..- ..+..-+.|++|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 556688999999986 76521 33455666889999999999985432 3344457999999999999853
Q ss_pred -ChhhcCCCccCceeeeecc
Q 041920 165 -IPKEIGSLRFLEVLELSSN 183 (193)
Q Consensus 165 -~p~~~~~l~~L~~L~l~~N 183 (193)
+-..+...+.|+.|++++|
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 3345777788999999865
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.14 E-value=0.001 Score=45.00 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=44.8
Q ss_pred EEEcCCCCcc-cccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCC
Q 041920 80 LIDLQESNIK-GELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLT 138 (193)
Q Consensus 80 ~L~l~~n~l~-~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~ 138 (193)
.++.++++++ ..+|.. + .+++++|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6778888875 355543 2 246999999999999666677899999999999999875
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.05 E-value=0.0025 Score=50.87 Aligned_cols=87 Identities=14% Similarity=0.096 Sum_probs=62.8
Q ss_pred CCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCCCc
Q 041920 94 RLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGSLR 173 (193)
Q Consensus 94 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 173 (193)
...|....+|+.+.+..+ ++..-...|.++.+|+.+++..+ ++......|.++.+|+.+++..+ ++..-...|.+++
T Consensus 290 ~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 290 EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 334666777888877654 54344556888888999988754 55444577888899999998766 6544456788899
Q ss_pred cCceeeeecc
Q 041920 174 FLEVLELSSN 183 (193)
Q Consensus 174 ~L~~L~l~~N 183 (193)
+|+.+++..+
T Consensus 367 ~L~~i~lp~~ 376 (394)
T 4fs7_A 367 NLKKVELPKR 376 (394)
T ss_dssp TCCEEEEEGG
T ss_pred CCCEEEECCC
Confidence 9999988765
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.03 E-value=0.0018 Score=51.66 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.+.+.++ +. .+....|.++.+|+.+++..+ ++..-...|.++.+|+.+++..+ ++..-...|.++.+|+.++
T Consensus 297 ~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 297 SSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp TTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred ccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 35666666554 54 666666999999999999754 66455677999999999999877 6645567899999999999
Q ss_pred cccCcCCccChhhcCCCccCcee
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVL 178 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L 178 (193)
+..+ ++ .+...|.++++|+.+
T Consensus 373 lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp EEGG-GG-GGGGGBCTTCEEEEE
T ss_pred ECCC-CE-EhhheecCCCCCcEE
Confidence 9765 33 345678888888764
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.0018 Score=51.74 Aligned_cols=103 Identities=14% Similarity=0.191 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeee
Q 041920 76 GSIILIDLQESNIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLD 155 (193)
Q Consensus 76 ~~l~~L~l~~n~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ 155 (193)
..++.+.+. +.+. .++...|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-...|.++.+|+.++
T Consensus 288 ~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 288 PALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp TTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred cccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 457777775 3455 677777999999999999764 55445667999999999999765 5544457899999999999
Q ss_pred cccCcCCccChhhcCCCccCceeeeecccc
Q 041920 156 LNSNNLNGIIPKEIGSLRFLEVLELSSNNL 185 (193)
Q Consensus 156 l~~n~l~~~~p~~~~~l~~L~~L~l~~N~l 185 (193)
+.++... -..+....+|+.+.+..|.+
T Consensus 364 ~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 364 YSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ESSCHHH---HHTCBCCCCC----------
T ss_pred ECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 9887643 14567788899888877654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.24 E-value=0.023 Score=44.82 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=65.4
Q ss_pred cCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccCcCCccChhhcCC
Q 041920 92 LGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSNNLNGIIPKEIGS 171 (193)
Q Consensus 92 l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 171 (193)
+....+.+...|+.+.+..+ ++..-...|.+..+|+.+.+..+ +.......+..+.+|+.+.+.++.++..-...|.+
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 33444677778888887654 44344456777888888888654 44344467788999999999988887555678889
Q ss_pred CccCceeeeecc
Q 041920 172 LRFLEVLELSSN 183 (193)
Q Consensus 172 l~~L~~L~l~~N 183 (193)
+.+|+.+.+..+
T Consensus 309 c~~L~~i~lp~~ 320 (379)
T 4h09_A 309 CVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEECCTT
T ss_pred CCCCCEEEcCcc
Confidence 999999998654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.75 E-value=36 Score=21.14 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=29.3
Q ss_pred CcccccCCCcCCCCCCCcEEEcccCccCccCchhccCCCCCCEEeCcCC
Q 041920 87 NIKGELGRLNFSCFPNLQYLDLWNNSLSGSIPSQIGSLSNLKYLGLDQN 135 (193)
Q Consensus 87 ~l~~~l~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ls~n 135 (193)
+++ .+....|.+..+|+.+.+..+ ++..-...|.++.+|+.+.+...
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344 455555777788888777654 33334456777777777776553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=52.64 E-value=39 Score=20.95 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=34.0
Q ss_pred CccCccCchhccCCCCCCEEeCcCCCCCccCCcccCCCCCCCeeecccC
Q 041920 111 NSLSGSIPSQIGSLSNLKYLGLDQNNLTGTIPKEIGSLRNLVGLDLNSN 159 (193)
Q Consensus 111 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l~~n 159 (193)
..++..-...|.++.+|+.+.+-.+- +..-...|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 34444445678888899998887653 3355577888899999888654
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=27.57 E-value=15 Score=15.77 Aligned_cols=10 Identities=30% Similarity=1.009 Sum_probs=7.4
Q ss_pred CCCCccccee
Q 041920 62 SDHCKWVGII 71 (193)
Q Consensus 62 ~~~c~w~gv~ 71 (193)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3579999864
Done!