BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041922
(523 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
G T LH+AAA G E+VE++ N ++V + + G T LHLAA+LG+
Sbjct: 35 GRTPLHMAAAVGHL----EIVEVLLRNGADVNAVDTN-GTTPLHLAASLGH 80
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 24 NNPMSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAA 83
N+ + + +SG TALH+AAA G T ++ L++ A + I++ G T LH AA
Sbjct: 186 NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ-----ARYDVNIKDYDGWTPLHAAA 240
Query: 84 ALGNEAMCHCM 94
G E C +
Sbjct: 241 HWGKEEACRIL 251
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASN-VLKIQNDRGDTALHLAAALG 86
+T GDTALH+A + L +G +A + L +QND G TALHLAA LG
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASN-VLKIQNDRGDTALHLAAALG 86
+T GDTALH+A + L +G +A + L +QND G TALHLAA LG
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFL---LGFSAGHEYLDLQNDLGQTALHLAAILG 56
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 23/137 (16%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCM-- 94
G TALH A AG T IV LV+ NV +D G T LH AA+ N +C +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQF----GVNVNAADSD-GWTPLHCAASCNNVQVCKFLVE 124
Query: 95 ------ASKDRELISAAD------EGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHG 142
A ++ +AAD EG CS +++K K Y D+
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW----DYE 180
Query: 143 KSSRDSRPDKDGDTFSV 159
+ D P K+GD ++
Sbjct: 181 PQNDDELPMKEGDCMTI 197
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 23/137 (16%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCM-- 94
G TALH A AG T IV LV+ NV +D G T LH AA+ N +C +
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQF----GVNVNAADSD-GWTPLHCAASCNNVQVCKFLVE 124
Query: 95 ------ASKDRELISAAD------EGLANCSWSSGNLEDKEHHREKRGTYMGLSSNDDHG 142
A ++ +AAD EG CS +++K K Y D+
Sbjct: 125 SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW----DYE 180
Query: 143 KSSRDSRPDKDGDTFSV 159
+ D P K+GD ++
Sbjct: 181 PQNDDELPMKEGDCMTI 197
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
+G T LH+AAA G E+VE++ ++ ++V ND G T LHLAA G+
Sbjct: 79 TGITPLHLAAATGHL----EIVEVLLKHGADVNAYDND-GHTPLHLAAKYGH 125
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR 273
R TP+++A + +V+++L+ + I+D DS+ K +LLAVE + I +LL R
Sbjct: 238 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 216 RKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDR 273
R TP+++A + +V+++L+ + I+D DS+ K +LLAVE + I +LL R
Sbjct: 218 RGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
GDT LH+AA G E+VE++ +N ++V + + G T LHLAA G+
Sbjct: 47 GDTPLHLAARVGHL----EIVEVLLKNGADVNAL-DFSGSTPLHLAAKRGH 92
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTALHLAAALGN 87
SG T LH+AA G IV L++ + NA + + G T LHLAA G+
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTI------GSTPLHLAADTGH 125
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
G T LH+AA G E+VE++ ++ ++V + + GDT LHLAA +G+
Sbjct: 80 GSTPLHLAALIGHL----EIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGH 125
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCM 94
GDT LH+AA G E+VE++ ++ ++V Q+ G TA ++ GNE + +
Sbjct: 113 GDTPLHLAAIMGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 5/51 (9%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
G T LH+AA G E+VE++ ++ ++V + + GDT LHLAA +G+
Sbjct: 80 GSTPLHLAALIGHL----EIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGH 125
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCM 94
GDT LH+AA G E+VE++ ++ ++V Q+ G TA ++ GNE + +
Sbjct: 113 GDTPLHLAAIMGHL----EIVEVLLKHGADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 33.5 bits (75), Expect = 0.26, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
+G T LH+AAA GQ E+VE++ +N ++V + G T LHLAA G+
Sbjct: 38 NGLTPLHLAAANGQL----EIVEVLLKNGADV-NASDSAGITPLHLAAYDGH 84
Score = 29.3 bits (64), Expect = 6.2, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCM 94
R+G T LH+AA +GQ E+VE++ ++ ++V Q+ G TA ++ G E + +
Sbjct: 103 RAGWTPLHLAALSGQL----EIVEVLLKHGADV-NAQDALGLTAFDISINQGQEDLAEIL 157
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
R+G +H AA AGQ + + L+E + + I+++ G+ LHLAA G+
Sbjct: 68 RTGFAVIHDAARAGQLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGH 115
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
R G+T LH+AA E+VE++ ++ ++V ND G T LHLAA G+
Sbjct: 45 RKGNTPLHLAADYDHL----EIVEVLLKHGADVNAHDND-GSTPLHLAALFGH 92
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA 82
R G TALH+AA + +V LVE+ + ++++++RG TAL LA
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELGAD-----IEVEDERGLTALELA 150
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA 82
R G TALH+AA + +V LVE+ + ++++++RG TAL LA
Sbjct: 109 RGGLTALHMAAGYVRPEVVEALVELGAD-----IEVEDERGLTALELA 151
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 33.1 bits (74), Expect = 0.38, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
+ GDT LH+AA G E+VE++ +N ++V + G T LHLAA G+
Sbjct: 78 KMGDTPLHLAALYGHL----EIVEVLLKNGADV-NATDTYGFTPLHLAADAGH 125
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 41 LHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG 86
+H+AA GQT+ V L+E G + + IQN G TALHLA G
Sbjct: 24 IHVAARKGQTDEVRRLIE-TGVSPT----IQNRFGCTALHLACKFG 64
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 33 LTRSGDTALHIAAAAGQTNIVSELVEIMGENASNV-LKIQNDRGDTALHLAAALGNEAMC 91
L ++G TAL+ A G +IV L N+ L QN GDTALH AA G +
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLF-----TQPNIELNQQNKLGDTALHAAAWKGYADIV 156
Query: 92 HCMASK 97
+ +K
Sbjct: 157 QLLLAK 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 219 TPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLLLDRKMLGE 278
TP+ +AA+ G E+V K+L + + DS+ K + LA EN + KLLL +
Sbjct: 39 TPLHLAAENGHKEVV-KLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG---- 93
Query: 279 SDLNIFEHVDIKGNSALHLAAKFG 302
+D N D G + LHLAA+ G
Sbjct: 94 ADPNAK---DSDGKTPLHLAAENG 114
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 34 TRSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHC 93
T +G T LHIAA G V L+E A +G T LH+AA G +
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQAC-----MTKKGFTPLHVAAKYGKVRVAEL 164
Query: 94 MASKDRELISAADEGL 109
+ +D +A GL
Sbjct: 165 LLERDAHPNAAGKNGL 180
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTALHLAAALGNEAMCHCM 94
+G T LHIAA Q + L++ G NA +V +G T LHLAA G+ M +
Sbjct: 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESV------QGVTPLHLAAQEGHAEMVALL 264
Query: 95 ASK 97
SK
Sbjct: 265 LSK 267
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 36/227 (15%)
Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNV-LKIQNDRGDTALHLAAALGNEAMCHCMA- 95
+T LH+AA AG T + L+ +N + V K ++D+ T LH AA +G+ M +
Sbjct: 48 ETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLE 101
Query: 96 -SKDRELISAADEGLANCSWSSGNLE------DKEHHR---EKRGTYMGLSSNDDHGKS- 144
+ + L + A + + G++E +KE + K+G + L +GK
Sbjct: 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVR 160
Query: 145 ------SRDSRPDKDGDTFSVPETPPVLENDQIFQSRNICLESAVAVHNKDGNARDETAT 198
RD+ P+ G P V N+ + L + H+ N
Sbjct: 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNN--LDIVKLLLPRGGSPHSPAWNGYTPLHI 218
Query: 199 AAVQE--------LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKIL 237
AA Q L++ + +S + TP+ +AA+ G EMV +L
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL 265
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
R+G+ +H AA AG + + L+E + + I+++ G+ LHLAA G+
Sbjct: 68 RTGNAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGH 115
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAMCHCMAS 96
G T LH+AA G E+VE++ +N ++V + G T LHLAA G+ + +
Sbjct: 47 GWTPLHLAAYWGHL----EIVEVLLKNGADV-NAYDTLGSTPLHLAAHFGHLEIVEVLLK 101
Query: 97 KDRELISAADEGLA--NCSWSSGNLE 120
++ + D G+ + + + G+LE
Sbjct: 102 NGADVNAKDDNGITPLHLAANRGHLE 127
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain
Mutant
Length = 253
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
R+G TALH+AAA +++ L+E AS IQ++ G T LH A +
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 99
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 204 LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
LK KD Q+ R+ TP+ +AA+ G E + +LD
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 38 DTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGNEAM 90
+TALH A AG T ++S L+E G N + QN +G++AL LA N M
Sbjct: 178 NTALHWAVLAGNTTVISLLLE-AGAN----VDAQNIKGESALDLAKQRKNVWM 225
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T LH A +
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 100
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 204 LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
LK KD Q+ R+ TP+ +AA+ G E + +LD
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T LH A +
Sbjct: 55 RTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 99
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 204 LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
LK KD Q+ R+ TP+ +AA+ G E + +LD
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To
1.55a Resolution
Length = 223
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T LH A +
Sbjct: 23 RTGETALHLAARYSRSDAAKRLLE-----ASADANIQDNMGRTPLHAAVS 67
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 204 LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
LK KD Q+ R+ TP+ +AA+ G E + +LD
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAA 84
R+G+TALH+AA +++ L+E AS IQ++ G T LH A +
Sbjct: 20 RTGETALHLAARYSRSDAAKRLLE-----ASADAXIQDNMGRTPLHAAVS 64
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 204 LKFMKKKDQQSGRKATPILIAAKMGVTEMVEKILD 238
LK KD Q+ ++ TP+ +AA+ G E + +LD
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 176
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 27 MSREAKLTRSGDTALHIAAAAGQTNIVSELVEIMGE-NASNVLKIQNDRGDTALHLA 82
+SR+A+ T+ T LH+AA+ G NIV L++ + NA ++LK+ TALH A
Sbjct: 58 VSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM------TALHWA 107
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
R+G +H AA AG + + L+E + + I+++ G+ LHLAA G+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGH 115
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
R+G +H AA AG + + L+E + + I+++ G+ LHLAA G+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLEFQAD-----VNIEDNEGNLPLHLAAKEGH 115
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
G+ L +AA Q +IV L E + A L+ Q+ RG+T LH A+ +
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQAD--LRRQDSRGNTVLHALVAIAD 188
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALG 86
G TALH AA IV LV GE SN K Q++ G T + LAA G
Sbjct: 279 GRTALHYAAQVSNXPIVKYLV---GEKGSNKDK-QDEDGKTPIXLAAQEG 324
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
G+ L +AA Q +IV+ L E + A ++ Q+ RG+T LH A+ +
Sbjct: 138 GELPLSLAACTNQPHIVNYLTENPHKKAD--MRRQDSRGNTVLHALVAIAD 186
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
Length = 241
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 37 GDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLA 82
GDT LHIA G V LV + + L I N+ T LHLA
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLF-QQGGRELDIYNNLRQTPLHLA 53
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 65 SNVLKIQNDRGDTALHLAAALGNEAMCHCMASKDRELISAADEGLANCSWSSG 117
+N+L Q+ GDT L++AA LGN ++ + + A GL + +G
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 4.8, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
R+G +H AA AG + + L+E N ++V I+++ G+ LHLAA G+
Sbjct: 68 RTGFAVIHDAARAGFLDTLQTLLE----NQADV-NIEDNEGNLPLHLAAKEGH 115
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
+G T LH+A+ G IV LV + ++V + G TALHLA L N
Sbjct: 116 NGHTCLHLASIHGYLGIVELLVSL----GADVNAQEPCNGRTALHLAVDLQN 163
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 34/124 (27%)
Query: 211 DQQSGRKATPILIAAKMGVTEMVEKILDTIPVAIHDLDSEKKNLVLLAVENRQTGIYKLL 270
D + +T + +AAK G E+V+ +L + ++ D ++ A E + + KLL
Sbjct: 71 DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 271 LDRKMLGESDLNIFEH------------------------------VDIKGNSALHLAAK 300
L + SD+NI ++ V+I G+S LH+AA+
Sbjct: 131 LSKG----SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186
Query: 301 FGEY 304
Y
Sbjct: 187 ENRY 190
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 36 SGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
+G T LH+A+ G IV LV + ++V + G TALHLA L N
Sbjct: 113 NGHTCLHLASIHGYLGIVELLVSL----GADVNAQEPCNGRTALHLAVDLQN 160
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 35 RSGDTALHIAAAAGQTNIVSELVEIMGENASNVLKIQNDRGDTALHLAAALGN 87
+SG T LH+AA G E+VE++ + ++V + +G T LHLAA G+
Sbjct: 78 KSGWTPLHLAAYRGHL----EIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGH 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,580,401
Number of Sequences: 62578
Number of extensions: 573001
Number of successful extensions: 1952
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1797
Number of HSP's gapped (non-prelim): 187
length of query: 523
length of database: 14,973,337
effective HSP length: 103
effective length of query: 420
effective length of database: 8,527,803
effective search space: 3581677260
effective search space used: 3581677260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)