Query 041923
Match_columns 529
No_of_seqs 445 out of 2885
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 12:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041923.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041923hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2.7E-89 5.9E-94 783.6 50.7 491 22-529 9-529 (1153)
2 PLN03194 putative disease resi 100.0 2.2E-42 4.9E-47 301.8 14.6 156 21-190 22-180 (187)
3 KOG4658 Apoptotic ATPase [Sign 100.0 1.9E-37 4E-42 339.5 25.3 284 212-502 161-496 (889)
4 PF00931 NB-ARC: NB-ARC domain 100.0 1.5E-33 3.2E-38 278.2 13.6 248 214-467 1-283 (287)
5 PF01582 TIR: TIR domain; Int 99.8 1E-21 2.2E-26 171.9 2.7 129 28-156 1-140 (141)
6 smart00255 TIR Toll - interleu 99.8 2.7E-20 5.9E-25 163.0 11.3 135 25-160 1-139 (140)
7 PRK04841 transcriptional regul 99.7 1.1E-14 2.4E-19 166.4 27.1 279 208-504 13-335 (903)
8 PF13676 TIR_2: TIR domain; PD 99.6 2.8E-16 6E-21 129.4 4.9 87 28-120 1-87 (102)
9 COG2909 MalT ATP-dependent tra 99.5 3.8E-12 8.3E-17 134.3 21.6 282 208-505 18-342 (894)
10 COG3899 Predicted ATPase [Gene 99.5 1E-12 2.2E-17 145.8 18.3 292 210-504 1-389 (849)
11 PRK00411 cdc6 cell division co 99.3 1E-09 2.2E-14 113.3 25.9 265 208-483 29-358 (394)
12 TIGR00635 ruvB Holliday juncti 99.2 1.7E-10 3.8E-15 114.7 13.8 238 209-483 4-289 (305)
13 TIGR02928 orc1/cdc6 family rep 99.2 2.7E-08 5.8E-13 101.6 27.6 264 208-483 14-350 (365)
14 PRK00080 ruvB Holliday junctio 99.2 2.6E-10 5.6E-15 114.3 12.2 240 208-483 24-310 (328)
15 COG3903 Predicted ATPase [Gene 99.2 7.8E-11 1.7E-15 115.7 8.0 272 222-503 8-316 (414)
16 PF01637 Arch_ATPase: Archaeal 99.1 4.5E-10 9.7E-15 106.9 10.4 181 211-394 1-233 (234)
17 COG2256 MGS1 ATPase related to 99.0 4E-08 8.7E-13 96.2 18.3 133 208-365 23-165 (436)
18 PF05729 NACHT: NACHT domain 98.9 5.9E-09 1.3E-13 93.5 10.8 134 229-365 1-152 (166)
19 TIGR03015 pepcterm_ATPase puta 98.9 1.2E-07 2.7E-12 92.4 20.4 166 227-399 42-242 (269)
20 KOG3678 SARM protein (with ste 98.9 9.9E-09 2.2E-13 101.0 9.7 144 21-191 608-760 (832)
21 PF13191 AAA_16: AAA ATPase do 98.7 8.6E-08 1.9E-12 87.7 9.8 46 210-255 1-51 (185)
22 PRK07003 DNA polymerase III su 98.7 2E-06 4.2E-11 92.1 20.8 148 208-365 15-180 (830)
23 PRK13342 recombination factor 98.7 3.7E-06 8.1E-11 87.0 21.6 165 208-398 11-199 (413)
24 PF14516 AAA_35: AAA-like doma 98.6 2E-05 4.3E-10 79.0 25.5 272 207-497 9-329 (331)
25 cd00009 AAA The AAA+ (ATPases 98.6 2.9E-07 6.3E-12 80.3 11.1 121 212-345 1-131 (151)
26 PTZ00112 origin recognition co 98.6 5E-06 1.1E-10 89.6 21.6 106 208-317 754-880 (1164)
27 PRK12402 replication factor C 98.6 2.5E-06 5.5E-11 86.1 18.3 47 208-254 14-62 (337)
28 PF13173 AAA_14: AAA domain 98.6 4.6E-07 1E-11 77.6 10.8 119 228-365 2-124 (128)
29 PRK00440 rfc replication facto 98.6 2.2E-06 4.7E-11 85.8 16.9 168 208-392 16-200 (319)
30 COG1474 CDC6 Cdc6-related prot 98.6 2.6E-05 5.7E-10 78.6 24.3 118 208-329 16-151 (366)
31 PRK07471 DNA polymerase III su 98.6 8.3E-06 1.8E-10 82.3 20.2 183 208-395 18-238 (365)
32 PF05496 RuvB_N: Holliday junc 98.5 1.6E-06 3.5E-11 79.6 13.5 166 208-400 23-226 (233)
33 PLN03025 replication factor C 98.5 3.8E-06 8.3E-11 83.9 17.4 122 208-343 12-138 (319)
34 PRK14960 DNA polymerase III su 98.5 2.9E-06 6.4E-11 89.8 17.1 175 208-392 14-216 (702)
35 PRK14963 DNA polymerase III su 98.5 5.9E-06 1.3E-10 86.9 19.4 175 208-392 13-214 (504)
36 PRK06893 DNA replication initi 98.5 3E-06 6.5E-11 80.3 15.2 37 227-263 38-74 (229)
37 PRK12323 DNA polymerase III su 98.5 9.1E-06 2E-10 86.0 19.9 177 208-391 15-221 (700)
38 PRK14961 DNA polymerase III su 98.5 1E-05 2.3E-10 82.2 20.0 172 208-391 15-216 (363)
39 PF13401 AAA_22: AAA domain; P 98.5 6.7E-07 1.5E-11 76.8 9.7 111 227-343 3-125 (131)
40 PRK14949 DNA polymerase III su 98.5 5.5E-06 1.2E-10 90.4 18.4 170 208-393 15-218 (944)
41 TIGR03420 DnaA_homol_Hda DnaA 98.5 1.8E-06 3.9E-11 81.8 13.2 54 209-262 15-72 (226)
42 PRK05564 DNA polymerase III su 98.4 1.3E-05 2.8E-10 80.0 17.6 168 209-393 4-188 (313)
43 PRK14962 DNA polymerase III su 98.4 1.6E-05 3.5E-10 82.9 18.8 170 208-397 13-221 (472)
44 PRK04195 replication factor C 98.4 7.1E-06 1.5E-10 86.7 16.4 165 208-394 13-201 (482)
45 PTZ00202 tuzin; Provisional 98.4 1.8E-06 4E-11 86.3 10.7 71 208-289 261-336 (550)
46 KOG2028 ATPase related to the 98.4 1.8E-06 3.9E-11 83.4 10.2 137 208-365 137-283 (554)
47 PRK08691 DNA polymerase III su 98.4 9.7E-06 2.1E-10 86.7 16.7 46 208-253 15-63 (709)
48 PRK14957 DNA polymerase III su 98.4 4.7E-05 1E-09 80.5 21.6 139 208-365 15-180 (546)
49 PRK14964 DNA polymerase III su 98.4 2E-05 4.3E-10 82.0 17.8 164 208-391 12-213 (491)
50 PRK14956 DNA polymerase III su 98.4 2.2E-05 4.7E-10 80.9 17.5 171 208-390 17-217 (484)
51 PRK07994 DNA polymerase III su 98.3 5.1E-05 1.1E-09 81.5 20.6 172 208-390 15-215 (647)
52 PRK08727 hypothetical protein; 98.3 1.6E-05 3.4E-10 75.6 14.9 56 208-263 18-76 (233)
53 PRK06645 DNA polymerase III su 98.3 4.3E-05 9.3E-10 80.2 19.2 170 208-392 20-226 (507)
54 PRK14958 DNA polymerase III su 98.3 1.8E-05 4E-10 83.4 16.4 165 208-392 15-217 (509)
55 PRK08903 DnaA regulatory inact 98.3 8.4E-06 1.8E-10 77.3 12.5 54 209-262 18-76 (227)
56 PRK13341 recombination factor 98.3 5.2E-05 1.1E-09 83.0 20.1 131 208-365 27-170 (725)
57 PRK14951 DNA polymerase III su 98.3 9.1E-05 2E-09 79.3 21.2 152 208-365 15-185 (618)
58 TIGR01242 26Sp45 26S proteasom 98.3 7.4E-06 1.6E-10 83.5 12.3 48 208-255 121-183 (364)
59 PRK07940 DNA polymerase III su 98.3 1.3E-05 2.9E-10 81.6 14.0 162 208-392 4-210 (394)
60 PRK09112 DNA polymerase III su 98.3 2.9E-05 6.3E-10 78.0 16.2 179 208-395 22-240 (351)
61 PRK14950 DNA polymerase III su 98.3 1.5E-05 3.2E-10 86.1 14.9 178 208-396 15-222 (585)
62 PRK14970 DNA polymerase III su 98.3 6.9E-05 1.5E-09 76.6 19.2 47 208-254 16-65 (367)
63 PRK14955 DNA polymerase III su 98.3 5.3E-05 1.1E-09 78.0 18.1 181 208-393 15-226 (397)
64 TIGR02397 dnaX_nterm DNA polym 98.2 5.4E-05 1.2E-09 77.0 17.9 168 208-395 13-218 (355)
65 TIGR00678 holB DNA polymerase 98.2 1.7E-05 3.6E-10 72.9 12.8 153 220-390 3-186 (188)
66 PRK05896 DNA polymerase III su 98.2 5.9E-05 1.3E-09 79.9 18.2 46 208-253 15-63 (605)
67 PRK08084 DNA replication initi 98.2 7.3E-05 1.6E-09 71.1 16.5 54 209-262 22-79 (235)
68 PRK07764 DNA polymerase III su 98.2 6.4E-05 1.4E-09 83.4 18.0 169 208-390 14-216 (824)
69 PRK14954 DNA polymerase III su 98.2 0.00014 3E-09 78.2 19.7 178 208-390 15-223 (620)
70 PRK05642 DNA replication initi 98.2 6E-05 1.3E-09 71.7 15.3 36 228-263 45-80 (234)
71 PRK09111 DNA polymerase III su 98.2 0.0001 2.2E-09 79.0 18.6 178 208-395 23-233 (598)
72 PRK14969 DNA polymerase III su 98.1 0.00019 4E-09 76.4 19.8 46 208-253 15-63 (527)
73 PF08937 DUF1863: MTH538 TIR-l 98.1 2.9E-06 6.3E-11 72.8 5.0 88 26-118 1-106 (130)
74 PRK03992 proteasome-activating 98.1 5.6E-05 1.2E-09 77.5 15.2 47 208-254 130-191 (389)
75 PRK14959 DNA polymerase III su 98.1 0.00015 3.3E-09 77.3 18.5 170 208-396 15-222 (624)
76 PF00004 AAA: ATPase family as 98.1 3.4E-05 7.4E-10 66.0 11.4 23 231-253 1-23 (132)
77 PRK14952 DNA polymerase III su 98.1 0.0002 4.4E-09 76.4 19.1 171 208-390 12-214 (584)
78 TIGR02639 ClpA ATP-dependent C 98.1 2E-05 4.4E-10 87.4 12.1 47 208-254 181-229 (731)
79 PRK08451 DNA polymerase III su 98.1 0.00024 5.3E-09 74.7 18.6 168 208-394 13-217 (535)
80 PF00308 Bac_DnaA: Bacterial d 98.1 0.00011 2.3E-09 69.1 14.3 100 228-343 34-139 (219)
81 PRK07133 DNA polymerase III su 98.0 0.00028 6.1E-09 76.4 18.9 169 208-390 17-214 (725)
82 PRK14953 DNA polymerase III su 98.0 0.00035 7.7E-09 73.4 19.1 177 208-395 15-220 (486)
83 PRK06305 DNA polymerase III su 98.0 0.00021 4.5E-09 74.6 17.3 165 208-390 16-217 (451)
84 PRK09087 hypothetical protein; 98.0 9.9E-05 2.2E-09 69.6 13.6 26 227-252 43-68 (226)
85 CHL00095 clpC Clp protease ATP 98.0 4.6E-05 1E-09 85.6 13.2 46 209-254 179-226 (821)
86 PRK14971 DNA polymerase III su 98.0 0.00039 8.3E-09 75.2 19.4 165 208-390 16-217 (614)
87 TIGR03345 VI_ClpV1 type VI sec 98.0 9.5E-05 2.1E-09 82.9 15.3 48 208-255 186-235 (852)
88 PHA02544 44 clamp loader, smal 98.0 0.00011 2.4E-09 73.4 14.5 116 208-344 20-141 (316)
89 PRK10865 protein disaggregatio 98.0 4.5E-05 9.7E-10 85.7 12.2 47 208-254 177-225 (857)
90 PRK08181 transposase; Validate 98.0 5.6E-05 1.2E-09 72.9 11.0 106 222-344 100-209 (269)
91 PRK08116 hypothetical protein; 98.0 4.4E-05 9.5E-10 74.0 10.3 102 228-343 114-220 (268)
92 PRK06647 DNA polymerase III su 98.0 0.0005 1.1E-08 73.5 18.8 174 208-392 15-217 (563)
93 PF05673 DUF815: Protein of un 98.0 7.1E-05 1.5E-09 69.9 10.7 48 208-255 26-79 (249)
94 PRK14948 DNA polymerase III su 97.9 0.00033 7.2E-09 75.7 17.2 176 208-393 15-220 (620)
95 cd01128 rho_factor Transcripti 97.9 3E-05 6.4E-10 74.0 8.1 88 227-317 15-114 (249)
96 KOG2227 Pre-initiation complex 97.9 0.00022 4.7E-09 71.7 14.0 111 208-318 149-268 (529)
97 PRK09376 rho transcription ter 97.9 2.8E-05 6E-10 77.6 7.6 88 227-317 168-267 (416)
98 PRK07399 DNA polymerase III su 97.9 0.00087 1.9E-08 66.5 18.2 180 209-395 4-221 (314)
99 TIGR02881 spore_V_K stage V sp 97.9 0.00019 4E-09 69.6 13.0 44 210-253 7-67 (261)
100 TIGR03346 chaperone_ClpB ATP-d 97.9 8E-05 1.7E-09 84.0 11.8 48 208-255 172-221 (852)
101 PTZ00454 26S protease regulato 97.9 0.00034 7.3E-09 71.6 15.2 47 208-254 144-205 (398)
102 PRK14087 dnaA chromosomal repl 97.9 0.00015 3.3E-09 75.5 12.9 152 229-397 142-321 (450)
103 PRK10536 hypothetical protein; 97.9 0.00016 3.6E-09 68.3 11.7 132 209-343 55-212 (262)
104 TIGR03689 pup_AAA proteasome A 97.9 0.00013 2.9E-09 76.2 12.2 47 209-255 182-243 (512)
105 PRK05563 DNA polymerase III su 97.9 0.00056 1.2E-08 73.3 17.1 172 208-391 15-216 (559)
106 TIGR02880 cbbX_cfxQ probable R 97.8 0.00021 4.5E-09 70.0 12.6 131 230-385 60-211 (284)
107 PRK14088 dnaA chromosomal repl 97.8 0.00024 5.2E-09 73.9 13.5 99 229-342 131-235 (440)
108 PRK14965 DNA polymerase III su 97.8 0.0014 3.1E-08 70.6 19.5 46 208-253 15-63 (576)
109 TIGR00362 DnaA chromosomal rep 97.8 0.00023 4.9E-09 73.7 13.0 99 229-343 137-241 (405)
110 COG2255 RuvB Holliday junction 97.8 0.0005 1.1E-08 64.9 13.6 243 208-487 25-316 (332)
111 PRK09183 transposase/IS protei 97.8 0.0003 6.5E-09 67.8 12.7 36 227-262 101-136 (259)
112 PTZ00361 26 proteosome regulat 97.8 9.5E-05 2.1E-09 76.2 9.2 48 209-256 183-245 (438)
113 TIGR00767 rho transcription te 97.8 9.8E-05 2.1E-09 74.1 8.9 89 227-318 167-267 (415)
114 COG1222 RPT1 ATP-dependent 26S 97.8 0.00016 3.4E-09 70.4 9.8 133 209-363 151-322 (406)
115 PRK06526 transposase; Provisio 97.8 0.00028 6E-09 67.7 11.4 29 227-255 97-125 (254)
116 PRK12377 putative replication 97.7 0.00018 4E-09 68.5 9.7 73 227-315 100-172 (248)
117 PF05621 TniB: Bacterial TniB 97.7 0.0011 2.4E-08 64.0 14.7 106 208-317 33-156 (302)
118 PF01695 IstB_IS21: IstB-like 97.7 5.9E-05 1.3E-09 68.4 5.7 73 227-316 46-118 (178)
119 smart00382 AAA ATPases associa 97.7 0.00012 2.5E-09 63.0 7.3 29 228-256 2-30 (148)
120 PRK00149 dnaA chromosomal repl 97.7 0.00039 8.4E-09 73.0 12.5 99 229-343 149-253 (450)
121 PRK12422 chromosomal replicati 97.7 0.0021 4.6E-08 66.8 17.7 98 229-343 142-244 (445)
122 COG1373 Predicted ATPase (AAA+ 97.7 0.0019 4.2E-08 66.3 16.9 237 212-483 20-270 (398)
123 KOG2543 Origin recognition com 97.7 0.00027 5.8E-09 69.3 9.6 105 208-320 5-129 (438)
124 PRK05707 DNA polymerase III su 97.6 0.0011 2.4E-08 66.1 14.2 86 307-395 107-203 (328)
125 PRK11034 clpA ATP-dependent Cl 97.6 0.00042 9.1E-09 76.4 11.9 47 208-254 185-233 (758)
126 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00046 1E-08 71.5 11.2 49 208-256 189-251 (802)
127 TIGR02903 spore_lon_C ATP-depe 97.6 0.00059 1.3E-08 74.0 12.9 45 208-252 153-199 (615)
128 PF10443 RNA12: RNA12 protein; 97.6 0.018 4E-07 58.3 22.3 38 214-251 1-41 (431)
129 PRK06620 hypothetical protein; 97.6 0.00031 6.8E-09 65.7 9.1 24 229-252 45-68 (214)
130 PRK07952 DNA replication prote 97.6 0.00058 1.3E-08 64.9 11.0 74 228-316 99-172 (244)
131 PRK14086 dnaA chromosomal repl 97.6 0.00098 2.1E-08 70.9 13.4 99 229-343 315-419 (617)
132 KOG0989 Replication factor C, 97.6 0.0087 1.9E-07 57.4 18.2 142 208-365 35-190 (346)
133 CHL00181 cbbX CbbX; Provisiona 97.6 0.0011 2.5E-08 64.8 12.7 25 229-253 60-84 (287)
134 PRK08769 DNA polymerase III su 97.5 0.0033 7.2E-08 62.2 15.8 163 218-395 13-208 (319)
135 PLN00020 ribulose bisphosphate 97.5 0.0022 4.7E-08 63.6 14.0 75 227-316 147-222 (413)
136 CHL00176 ftsH cell division pr 97.5 0.0027 5.9E-08 68.8 16.0 45 208-252 182-240 (638)
137 PF02562 PhoH: PhoH-like prote 97.5 0.00033 7.1E-09 64.4 7.6 126 214-343 5-155 (205)
138 PF13177 DNA_pol3_delta2: DNA 97.5 0.0017 3.8E-08 57.8 12.1 135 213-363 1-161 (162)
139 PRK06921 hypothetical protein; 97.5 0.00044 9.5E-09 66.9 8.8 36 228-263 117-153 (266)
140 PRK08058 DNA polymerase III su 97.5 0.0022 4.7E-08 64.3 13.7 133 210-365 6-171 (329)
141 PF08357 SEFIR: SEFIR domain; 97.5 0.00014 3.1E-09 64.0 4.6 64 27-90 2-70 (150)
142 COG1484 DnaC DNA replication p 97.5 0.00089 1.9E-08 64.3 10.4 37 226-262 103-139 (254)
143 TIGR02640 gas_vesic_GvpN gas v 97.4 0.00073 1.6E-08 65.4 9.6 35 218-252 11-45 (262)
144 PRK12608 transcription termina 97.4 0.00082 1.8E-08 67.1 10.0 94 220-316 122-230 (380)
145 TIGR01241 FtsH_fam ATP-depende 97.4 0.0021 4.5E-08 68.3 13.8 46 208-253 54-113 (495)
146 COG0542 clpA ATP-binding subun 97.4 0.00094 2E-08 72.5 11.1 111 208-329 490-618 (786)
147 PRK06835 DNA replication prote 97.4 0.00063 1.4E-08 67.7 8.9 37 227-263 182-218 (329)
148 cd01133 F1-ATPase_beta F1 ATP 97.4 0.00086 1.9E-08 64.4 9.2 89 227-318 68-175 (274)
149 cd01131 PilT Pilus retraction 97.4 0.00084 1.8E-08 62.1 9.0 110 229-346 2-111 (198)
150 COG2607 Predicted ATPase (AAA+ 97.4 0.0015 3.3E-08 60.2 10.1 51 208-258 59-115 (287)
151 PRK11331 5-methylcytosine-spec 97.4 0.00038 8.2E-09 71.1 7.0 46 209-254 175-220 (459)
152 KOG0744 AAA+-type ATPase [Post 97.4 0.00037 8E-09 66.8 6.2 36 227-262 176-215 (423)
153 PRK07993 DNA polymerase III su 97.3 0.005 1.1E-07 61.6 14.1 150 218-391 11-200 (334)
154 TIGR02639 ClpA ATP-dependent C 97.3 0.0013 2.8E-08 73.2 10.8 110 208-329 453-578 (731)
155 CHL00095 clpC Clp protease ATP 97.3 0.0017 3.6E-08 73.2 11.8 113 208-329 508-636 (821)
156 COG2812 DnaX DNA polymerase II 97.3 0.012 2.7E-07 61.5 17.1 178 208-401 15-212 (515)
157 PRK06871 DNA polymerase III su 97.3 0.0071 1.5E-07 60.0 14.8 162 218-390 11-198 (325)
158 cd01120 RecA-like_NTPases RecA 97.3 0.002 4.3E-08 57.0 10.0 34 230-263 1-34 (165)
159 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0016 3.5E-08 73.6 11.3 112 208-328 564-691 (852)
160 PRK08939 primosomal protein Dn 97.3 0.0023 4.9E-08 63.2 11.0 99 228-343 156-260 (306)
161 COG0593 DnaA ATPase involved i 97.3 0.0042 9.1E-08 62.9 13.0 100 228-343 113-217 (408)
162 PRK06090 DNA polymerase III su 97.3 0.013 2.9E-07 57.9 16.2 172 218-414 12-217 (319)
163 TIGR01243 CDC48 AAA family ATP 97.3 0.0011 2.4E-08 73.9 9.6 46 209-254 178-238 (733)
164 PRK00771 signal recognition pa 97.2 0.01 2.2E-07 61.4 15.3 28 228-255 95-122 (437)
165 PF14532 Sigma54_activ_2: Sigm 97.2 0.00065 1.4E-08 58.9 5.7 41 212-252 1-45 (138)
166 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0014 3E-08 73.8 9.6 47 208-254 565-622 (852)
167 PRK11608 pspF phage shock prot 97.2 0.011 2.3E-07 59.2 15.2 44 208-251 5-52 (326)
168 PRK04296 thymidine kinase; Pro 97.2 0.00075 1.6E-08 61.9 6.3 108 229-345 3-117 (190)
169 COG0470 HolB ATPase involved i 97.2 0.0055 1.2E-07 61.3 12.9 119 211-343 3-148 (325)
170 TIGR01243 CDC48 AAA family ATP 97.2 0.0071 1.5E-07 67.6 14.8 47 209-255 453-514 (733)
171 PRK10865 protein disaggregatio 97.2 0.0031 6.6E-08 71.2 11.8 111 208-328 567-694 (857)
172 PF07728 AAA_5: AAA domain (dy 97.1 0.0013 2.9E-08 56.9 7.1 22 231-252 2-23 (139)
173 PRK11889 flhF flagellar biosyn 97.1 0.015 3.3E-07 58.5 15.1 29 227-255 240-268 (436)
174 TIGR00602 rad24 checkpoint pro 97.1 0.00076 1.7E-08 72.6 6.5 46 208-253 83-135 (637)
175 CHL00195 ycf46 Ycf46; Provisio 97.1 0.011 2.3E-07 62.2 14.7 45 209-253 228-284 (489)
176 PF13207 AAA_17: AAA domain; P 97.1 0.00044 9.4E-09 58.3 3.7 23 230-252 1-23 (121)
177 PRK11034 clpA ATP-dependent Cl 97.1 0.0019 4.2E-08 71.3 9.4 108 208-328 457-581 (758)
178 PRK05022 anaerobic nitric oxid 97.1 0.018 3.9E-07 61.4 16.5 46 208-253 186-235 (509)
179 PF04665 Pox_A32: Poxvirus A32 97.1 0.0014 3E-08 61.8 6.9 37 227-263 12-48 (241)
180 COG1618 Predicted nucleotide k 97.1 0.00061 1.3E-08 58.9 4.1 34 229-262 6-40 (179)
181 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00061 1.3E-08 67.7 4.8 46 209-254 51-104 (361)
182 PRK14974 cell division protein 97.1 0.023 4.9E-07 56.8 15.8 29 227-255 139-167 (336)
183 KOG2228 Origin recognition com 97.1 0.031 6.7E-07 54.4 15.9 179 209-396 24-233 (408)
184 PRK06964 DNA polymerase III su 97.1 0.022 4.7E-07 57.0 15.5 82 306-393 132-223 (342)
185 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0013 2.8E-08 63.7 6.4 103 216-328 67-171 (264)
186 TIGR02974 phageshock_pspF psp 97.0 0.011 2.4E-07 59.1 13.3 42 211-252 1-46 (329)
187 TIGR01420 pilT_fam pilus retra 97.0 0.0044 9.5E-08 62.5 10.4 115 220-343 113-229 (343)
188 KOG0735 AAA+-type ATPase [Post 97.0 0.0024 5.1E-08 67.5 8.2 75 227-316 430-504 (952)
189 PHA00729 NTP-binding motif con 97.0 0.0024 5.2E-08 59.5 7.5 27 227-253 16-42 (226)
190 PRK15429 formate hydrogenlyase 97.0 0.017 3.7E-07 64.0 15.5 44 209-252 376-423 (686)
191 COG0542 clpA ATP-binding subun 97.0 0.0063 1.4E-07 66.3 11.6 47 208-254 169-217 (786)
192 KOG0991 Replication factor C, 97.0 0.012 2.6E-07 54.2 11.5 57 208-264 26-85 (333)
193 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.025 5.5E-07 49.8 13.1 110 229-344 3-138 (159)
194 PRK09361 radB DNA repair and r 96.9 0.0028 6.1E-08 59.9 7.7 43 221-263 12-58 (225)
195 PRK05541 adenylylsulfate kinas 96.9 0.0017 3.6E-08 58.9 5.9 37 227-263 6-42 (176)
196 PRK06696 uridine kinase; Valid 96.9 0.0014 3E-08 61.9 5.4 43 213-255 2-49 (223)
197 COG1066 Sms Predicted ATP-depe 96.9 0.0046 1E-07 61.6 9.1 90 217-315 78-177 (456)
198 PRK10867 signal recognition pa 96.9 0.034 7.5E-07 57.4 15.5 28 228-255 100-127 (433)
199 cd01394 radB RadB. The archaea 96.9 0.0037 7.9E-08 58.8 7.9 45 219-263 6-54 (218)
200 TIGR01817 nifA Nif-specific re 96.9 0.028 6E-07 60.5 15.5 46 208-253 195-244 (534)
201 PRK06067 flagellar accessory p 96.8 0.0054 1.2E-07 58.3 8.8 37 227-263 24-60 (234)
202 KOG0741 AAA+-type ATPase [Post 96.8 0.021 4.5E-07 58.6 13.0 121 227-365 537-674 (744)
203 PRK05703 flhF flagellar biosyn 96.8 0.042 9.2E-07 56.9 15.9 26 228-253 221-246 (424)
204 PF13604 AAA_30: AAA domain; P 96.8 0.0018 3.9E-08 59.8 5.3 114 217-345 6-132 (196)
205 KOG0729 26S proteasome regulat 96.8 0.01 2.3E-07 55.5 10.1 116 211-346 179-328 (435)
206 PF00158 Sigma54_activat: Sigm 96.8 0.0072 1.6E-07 54.1 8.8 41 211-251 1-45 (168)
207 TIGR01650 PD_CobS cobaltochela 96.8 0.0034 7.5E-08 61.8 7.3 49 208-256 44-92 (327)
208 KOG0727 26S proteasome regulat 96.8 0.0049 1.1E-07 57.1 7.6 47 210-256 156-217 (408)
209 PF01583 APS_kinase: Adenylyls 96.8 0.0018 4E-08 56.7 4.6 36 228-263 2-37 (156)
210 cd01121 Sms Sms (bacterial rad 96.8 0.0051 1.1E-07 62.3 8.4 89 219-315 69-167 (372)
211 TIGR02237 recomb_radB DNA repa 96.8 0.0032 6.9E-08 58.7 6.5 37 227-263 11-47 (209)
212 COG3267 ExeA Type II secretory 96.7 0.085 1.8E-06 49.6 15.5 173 219-397 41-247 (269)
213 TIGR00763 lon ATP-dependent pr 96.7 0.0062 1.3E-07 68.3 9.7 48 209-256 320-375 (775)
214 PRK12726 flagellar biosynthesi 96.7 0.039 8.6E-07 55.4 14.2 36 227-262 205-240 (407)
215 PF13671 AAA_33: AAA domain; P 96.7 0.0042 9.2E-08 53.9 6.8 24 230-253 1-24 (143)
216 TIGR02524 dot_icm_DotB Dot/Icm 96.7 0.0037 8.1E-08 63.0 7.0 103 221-327 126-233 (358)
217 PRK05917 DNA polymerase III su 96.7 0.035 7.6E-07 54.0 13.3 145 219-389 7-175 (290)
218 PRK08699 DNA polymerase III su 96.7 0.044 9.5E-07 54.7 14.4 25 228-252 21-45 (325)
219 TIGR00064 ftsY signal recognit 96.7 0.047 1E-06 53.0 14.3 36 227-263 71-106 (272)
220 PRK04132 replication factor C 96.7 0.045 9.7E-07 60.9 15.7 142 233-391 569-727 (846)
221 PF00448 SRP54: SRP54-type pro 96.7 0.01 2.2E-07 54.6 9.2 34 228-262 1-34 (196)
222 PRK14722 flhF flagellar biosyn 96.7 0.015 3.3E-07 58.6 11.1 30 227-256 136-165 (374)
223 KOG1514 Origin recognition com 96.7 0.035 7.5E-07 59.0 13.9 127 208-340 395-545 (767)
224 COG0466 Lon ATP-dependent Lon 96.7 0.0019 4E-08 68.6 4.6 50 208-257 322-379 (782)
225 TIGR01425 SRP54_euk signal rec 96.7 0.065 1.4E-06 55.1 15.6 28 228-255 100-127 (429)
226 PRK10733 hflB ATP-dependent me 96.6 0.021 4.6E-07 62.5 12.7 46 209-254 152-211 (644)
227 TIGR00959 ffh signal recogniti 96.6 0.076 1.6E-06 54.8 15.9 26 228-253 99-124 (428)
228 KOG0726 26S proteasome regulat 96.6 0.004 8.7E-08 59.0 5.8 48 209-256 185-247 (440)
229 PF13238 AAA_18: AAA domain; P 96.6 0.0018 4E-08 54.9 3.4 22 231-252 1-22 (129)
230 COG4088 Predicted nucleotide k 96.6 0.007 1.5E-07 54.6 7.0 28 229-256 2-29 (261)
231 PRK07667 uridine kinase; Provi 96.6 0.004 8.7E-08 57.3 5.8 37 219-255 4-44 (193)
232 cd01393 recA_like RecA is a b 96.6 0.017 3.7E-07 54.5 10.2 37 227-263 18-60 (226)
233 KOG0652 26S proteasome regulat 96.6 0.027 5.8E-07 52.6 10.9 45 209-253 171-230 (424)
234 PF08433 KTI12: Chromatin asso 96.6 0.0052 1.1E-07 59.5 6.7 27 229-255 2-28 (270)
235 COG0488 Uup ATPase components 96.6 0.037 7.9E-07 58.7 13.5 131 227-362 347-511 (530)
236 KOG1970 Checkpoint RAD17-RFC c 96.6 0.008 1.7E-07 61.9 8.1 39 215-253 88-135 (634)
237 PRK11388 DNA-binding transcrip 96.6 0.038 8.2E-07 60.8 14.3 45 208-252 324-372 (638)
238 cd03238 ABC_UvrA The excision 96.6 0.011 2.4E-07 53.4 8.3 24 227-250 20-43 (176)
239 cd01122 GP4d_helicase GP4d_hel 96.6 0.039 8.5E-07 53.7 12.9 37 227-263 29-66 (271)
240 PRK08118 topology modulation p 96.5 0.002 4.4E-08 57.7 3.4 26 229-254 2-27 (167)
241 cd03228 ABCC_MRP_Like The MRP 96.5 0.019 4.1E-07 51.7 9.7 117 227-348 27-159 (171)
242 cd03247 ABCC_cytochrome_bd The 96.5 0.021 4.5E-07 51.8 10.1 113 227-348 27-161 (178)
243 PRK13531 regulatory ATPase Rav 96.5 0.0024 5.2E-08 65.9 4.3 47 208-254 19-65 (498)
244 KOG0651 26S proteasome regulat 96.5 0.0095 2.1E-07 57.1 7.9 102 227-347 165-284 (388)
245 cd00544 CobU Adenosylcobinamid 96.5 0.021 4.5E-07 51.2 9.6 77 230-315 1-82 (169)
246 KOG0066 eIF2-interacting prote 96.4 0.095 2.1E-06 52.7 14.5 152 227-385 612-797 (807)
247 TIGR00708 cobA cob(I)alamin ad 96.4 0.021 4.5E-07 51.0 9.1 112 228-344 5-140 (173)
248 COG3854 SpoIIIAA ncharacterize 96.4 0.016 3.4E-07 53.4 8.4 110 228-343 137-252 (308)
249 cd03223 ABCD_peroxisomal_ALDP 96.4 0.011 2.4E-07 52.9 7.5 113 227-347 26-151 (166)
250 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.011 2.5E-07 51.4 7.4 104 227-348 25-131 (144)
251 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.0084 1.8E-07 57.0 7.1 26 227-252 18-43 (235)
252 PRK10820 DNA-binding transcrip 96.4 0.073 1.6E-06 56.9 14.9 43 208-250 203-249 (520)
253 KOG1969 DNA replication checkp 96.4 0.009 2E-07 63.5 7.6 72 227-317 325-398 (877)
254 PHA02244 ATPase-like protein 96.4 0.012 2.6E-07 58.8 8.1 47 208-254 95-145 (383)
255 cd03214 ABC_Iron-Siderophores_ 96.4 0.014 3E-07 53.1 8.1 117 227-347 24-161 (180)
256 PF00485 PRK: Phosphoribulokin 96.4 0.0031 6.7E-08 58.1 3.8 26 230-255 1-26 (194)
257 COG2884 FtsE Predicted ATPase 96.4 0.019 4.1E-07 51.4 8.4 54 296-351 145-204 (223)
258 PRK10787 DNA-binding ATP-depen 96.4 0.012 2.6E-07 65.6 8.8 48 208-255 321-376 (784)
259 KOG0730 AAA+-type ATPase [Post 96.4 0.062 1.4E-06 56.8 13.3 47 211-257 436-497 (693)
260 KOG0733 Nuclear AAA ATPase (VC 96.3 0.029 6.4E-07 58.6 10.7 100 227-346 544-659 (802)
261 PRK12723 flagellar biosynthesi 96.3 0.063 1.4E-06 54.7 13.2 27 227-253 173-199 (388)
262 PRK15455 PrkA family serine pr 96.3 0.0039 8.4E-08 65.5 4.4 47 208-254 75-129 (644)
263 KOG0731 AAA+-type ATPase conta 96.3 0.092 2E-06 57.1 14.8 45 208-252 310-368 (774)
264 TIGR00416 sms DNA repair prote 96.3 0.018 3.9E-07 60.2 9.3 90 218-315 80-179 (454)
265 PRK07261 topology modulation p 96.3 0.0033 7.2E-08 56.6 3.4 23 230-252 2-24 (171)
266 COG4608 AppF ABC-type oligopep 96.3 0.018 3.9E-07 54.7 8.2 122 227-350 38-176 (268)
267 cd03115 SRP The signal recogni 96.3 0.036 7.8E-07 49.9 10.1 26 230-255 2-27 (173)
268 COG5635 Predicted NTPase (NACH 96.3 0.028 6E-07 63.6 11.2 114 228-346 222-350 (824)
269 PF00910 RNA_helicase: RNA hel 96.3 0.0028 6E-08 52.2 2.5 26 231-256 1-26 (107)
270 COG1875 NYN ribonuclease and A 96.3 0.028 6.1E-07 55.3 9.6 127 211-342 226-386 (436)
271 PRK11823 DNA repair protein Ra 96.3 0.021 4.6E-07 59.5 9.6 91 218-316 66-166 (446)
272 PRK09280 F0F1 ATP synthase sub 96.3 0.02 4.2E-07 59.2 9.0 88 227-317 143-249 (463)
273 PRK12727 flagellar biosynthesi 96.3 0.013 2.8E-07 61.3 7.8 29 227-255 349-377 (559)
274 TIGR01069 mutS2 MutS2 family p 96.3 0.014 3.1E-07 64.8 8.7 172 227-414 321-520 (771)
275 PF03969 AFG1_ATPase: AFG1-lik 96.2 0.011 2.4E-07 59.6 7.1 101 227-343 61-166 (362)
276 PF07726 AAA_3: ATPase family 96.2 0.0031 6.8E-08 52.9 2.6 28 231-258 2-29 (131)
277 KOG2004 Mitochondrial ATP-depe 96.2 0.004 8.7E-08 65.9 3.9 50 208-257 410-467 (906)
278 PF00437 T2SE: Type II/IV secr 96.2 0.0041 8.9E-08 60.6 3.8 122 209-342 104-230 (270)
279 PF00006 ATP-synt_ab: ATP synt 96.2 0.012 2.6E-07 54.8 6.7 84 227-316 14-115 (215)
280 cd02019 NK Nucleoside/nucleoti 96.2 0.0042 9.1E-08 46.6 3.0 23 230-252 1-23 (69)
281 PRK08233 hypothetical protein; 96.2 0.0036 7.8E-08 56.8 3.2 26 228-253 3-28 (182)
282 PRK06762 hypothetical protein; 96.2 0.0041 8.9E-08 55.7 3.4 25 228-252 2-26 (166)
283 KOG0728 26S proteasome regulat 96.2 0.051 1.1E-06 50.5 10.3 42 210-251 147-204 (404)
284 cd03216 ABC_Carb_Monos_I This 96.2 0.0053 1.1E-07 54.8 3.9 118 227-348 25-146 (163)
285 PTZ00301 uridine kinase; Provi 96.2 0.0065 1.4E-07 56.5 4.6 29 228-256 3-31 (210)
286 KOG1051 Chaperone HSP104 and r 96.1 0.046 1E-06 60.6 11.7 103 211-326 564-682 (898)
287 cd03281 ABC_MSH5_euk MutS5 hom 96.1 0.0071 1.5E-07 56.5 4.8 23 228-250 29-51 (213)
288 PRK05986 cob(I)alamin adenolsy 96.1 0.033 7.1E-07 50.5 8.7 113 227-344 21-158 (191)
289 KOG0734 AAA+-type ATPase conta 96.1 0.02 4.3E-07 58.8 8.0 44 209-252 304-361 (752)
290 COG1223 Predicted ATPase (AAA+ 96.1 0.018 3.9E-07 53.9 7.1 46 208-253 120-176 (368)
291 PRK10923 glnG nitrogen regulat 96.1 0.088 1.9E-06 55.7 13.4 43 209-251 138-184 (469)
292 PRK12597 F0F1 ATP synthase sub 96.1 0.026 5.7E-07 58.5 9.0 88 227-317 142-248 (461)
293 PRK12724 flagellar biosynthesi 96.1 0.04 8.6E-07 56.2 10.1 25 228-252 223-247 (432)
294 PRK03839 putative kinase; Prov 96.1 0.0048 1E-07 56.1 3.3 24 230-253 2-25 (180)
295 cd01130 VirB11-like_ATPase Typ 96.1 0.011 2.5E-07 53.9 5.7 97 220-325 17-119 (186)
296 TIGR02533 type_II_gspE general 96.1 0.0098 2.1E-07 62.6 5.9 101 217-327 230-332 (486)
297 TIGR02525 plasmid_TraJ plasmid 96.0 0.024 5.2E-07 57.4 8.3 97 227-327 148-246 (372)
298 TIGR01039 atpD ATP synthase, F 96.0 0.032 7E-07 57.5 9.3 88 227-317 142-248 (461)
299 cd02027 APSK Adenosine 5'-phos 96.0 0.042 9.1E-07 48.2 8.9 25 230-254 1-25 (149)
300 PRK09270 nucleoside triphospha 96.0 0.0078 1.7E-07 57.0 4.6 30 227-256 32-61 (229)
301 TIGR02329 propionate_PrpR prop 96.0 0.14 3.1E-06 54.4 14.5 44 209-252 212-259 (526)
302 COG0396 sufC Cysteine desulfur 96.0 0.055 1.2E-06 50.0 9.7 24 227-250 29-52 (251)
303 cd00227 CPT Chloramphenicol (C 96.0 0.0066 1.4E-07 54.9 3.8 26 228-253 2-27 (175)
304 PRK00131 aroK shikimate kinase 96.0 0.0062 1.4E-07 54.8 3.6 25 228-252 4-28 (175)
305 COG3910 Predicted ATPase [Gene 96.0 0.14 3E-06 45.9 11.6 34 218-251 26-60 (233)
306 PF02456 Adeno_IVa2: Adenoviru 96.0 0.26 5.6E-06 47.6 14.2 163 228-399 87-298 (369)
307 PRK00625 shikimate kinase; Pro 96.0 0.0057 1.2E-07 55.0 3.1 24 230-253 2-25 (173)
308 PRK04040 adenylate kinase; Pro 96.0 0.007 1.5E-07 55.3 3.8 26 228-253 2-27 (188)
309 COG0541 Ffh Signal recognition 96.0 0.49 1.1E-05 48.0 16.8 35 227-262 99-133 (451)
310 cd03222 ABC_RNaseL_inhibitor T 96.0 0.03 6.5E-07 50.6 7.8 105 227-348 24-136 (177)
311 COG4133 CcmA ABC-type transpor 95.9 0.044 9.5E-07 49.0 8.4 28 227-254 27-54 (209)
312 TIGR00150 HI0065_YjeE ATPase, 95.9 0.011 2.4E-07 50.4 4.5 30 224-253 18-47 (133)
313 TIGR03600 phage_DnaB phage rep 95.9 0.21 4.7E-06 51.9 15.0 63 218-287 181-247 (421)
314 cd03246 ABCC_Protease_Secretio 95.9 0.023 5E-07 51.2 6.9 115 227-348 27-160 (173)
315 cd03230 ABC_DR_subfamily_A Thi 95.9 0.024 5.2E-07 51.1 7.0 114 227-348 25-159 (173)
316 PF13245 AAA_19: Part of AAA d 95.9 0.017 3.6E-07 44.2 5.0 26 227-252 9-34 (76)
317 PF06068 TIP49: TIP49 C-termin 95.9 0.033 7.2E-07 55.3 8.2 53 208-260 23-82 (398)
318 PRK05480 uridine/cytidine kina 95.9 0.0066 1.4E-07 56.6 3.3 26 227-252 5-30 (209)
319 TIGR02858 spore_III_AA stage I 95.9 0.022 4.8E-07 55.1 6.9 112 228-346 111-231 (270)
320 COG0714 MoxR-like ATPases [Gen 95.8 0.01 2.3E-07 59.5 4.8 50 208-257 23-72 (329)
321 PRK15115 response regulator Gl 95.8 0.33 7.1E-06 50.9 16.3 44 209-252 134-181 (444)
322 PRK06547 hypothetical protein; 95.8 0.011 2.3E-07 53.2 4.4 26 227-252 14-39 (172)
323 PRK00889 adenylylsulfate kinas 95.8 0.011 2.5E-07 53.3 4.6 28 228-255 4-31 (175)
324 PRK04301 radA DNA repair and r 95.8 0.051 1.1E-06 54.2 9.6 27 227-253 101-127 (317)
325 TIGR03499 FlhF flagellar biosy 95.8 0.053 1.2E-06 53.0 9.5 29 227-255 193-221 (282)
326 cd00984 DnaB_C DnaB helicase C 95.8 0.081 1.8E-06 50.4 10.6 51 227-284 12-63 (242)
327 PRK10436 hypothetical protein; 95.8 0.02 4.4E-07 59.7 6.8 106 212-327 200-308 (462)
328 PF10137 TIR-like: Predicted n 95.8 0.02 4.4E-07 48.1 5.6 60 27-89 1-61 (125)
329 TIGR02782 TrbB_P P-type conjug 95.8 0.027 5.8E-07 55.6 7.3 98 219-324 123-222 (299)
330 TIGR01360 aden_kin_iso1 adenyl 95.8 0.0084 1.8E-07 54.7 3.6 25 228-252 3-27 (188)
331 PF03796 DnaB_C: DnaB-like hel 95.8 0.062 1.3E-06 51.9 9.8 106 227-340 18-136 (259)
332 PRK15424 propionate catabolism 95.8 0.18 4E-06 53.7 14.0 43 209-251 219-265 (538)
333 PRK05800 cobU adenosylcobinami 95.8 0.094 2E-06 47.1 10.2 24 229-252 2-25 (170)
334 cd01125 repA Hexameric Replica 95.8 0.056 1.2E-06 51.6 9.3 24 230-253 3-26 (239)
335 KOG0739 AAA+-type ATPase [Post 95.8 0.067 1.5E-06 51.1 9.3 45 209-253 133-191 (439)
336 PF08423 Rad51: Rad51; InterP 95.8 0.026 5.6E-07 54.3 6.9 34 219-252 25-62 (256)
337 COG0529 CysC Adenylylsulfate k 95.8 0.013 2.9E-07 51.6 4.4 36 227-262 22-57 (197)
338 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.047 1E-06 51.8 8.4 50 296-347 147-202 (254)
339 PF03266 NTPase_1: NTPase; In 95.8 0.0082 1.8E-07 53.8 3.2 24 231-254 2-25 (168)
340 CHL00206 ycf2 Ycf2; Provisiona 95.7 0.097 2.1E-06 62.1 12.4 26 227-252 1629-1654(2281)
341 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.019 4.1E-07 55.5 5.9 37 227-263 35-71 (259)
342 TIGR02788 VirB11 P-type DNA tr 95.7 0.017 3.6E-07 57.4 5.7 109 227-343 143-252 (308)
343 cd03283 ABC_MutS-like MutS-lik 95.7 0.086 1.9E-06 48.7 10.0 26 227-252 24-49 (199)
344 cd02028 UMPK_like Uridine mono 95.7 0.013 2.7E-07 53.2 4.4 26 230-255 1-26 (179)
345 PRK10463 hydrogenase nickel in 95.7 0.016 3.4E-07 56.2 5.2 40 221-260 95-136 (290)
346 PF03205 MobB: Molybdopterin g 95.7 0.018 3.9E-07 49.9 5.1 34 229-262 1-35 (140)
347 TIGR02238 recomb_DMC1 meiotic 95.7 0.051 1.1E-06 53.9 8.8 33 219-251 83-119 (313)
348 cd03229 ABC_Class3 This class 95.7 0.03 6.6E-07 50.7 6.7 25 227-251 25-49 (178)
349 cd01135 V_A-ATPase_B V/A-type 95.7 0.059 1.3E-06 51.8 8.8 89 227-318 68-178 (276)
350 PRK10416 signal recognition pa 95.7 0.072 1.6E-06 52.9 9.8 29 227-255 113-141 (318)
351 cd03232 ABC_PDR_domain2 The pl 95.6 0.04 8.7E-07 50.6 7.5 24 227-250 32-55 (192)
352 COG1136 SalX ABC-type antimicr 95.6 0.049 1.1E-06 50.8 7.9 54 296-350 150-209 (226)
353 PLN03187 meiotic recombination 95.6 0.058 1.3E-06 54.0 9.0 33 220-252 114-150 (344)
354 PRK05973 replicative DNA helic 95.6 0.018 4E-07 54.3 5.1 38 226-263 62-99 (237)
355 PRK13947 shikimate kinase; Pro 95.6 0.0093 2E-07 53.6 3.1 25 230-254 3-27 (171)
356 PRK00279 adk adenylate kinase; 95.6 0.032 6.9E-07 52.3 6.8 23 230-252 2-24 (215)
357 PRK14721 flhF flagellar biosyn 95.6 0.17 3.8E-06 52.0 12.5 26 227-252 190-215 (420)
358 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.035 7.5E-07 53.2 7.1 26 227-252 24-49 (246)
359 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.0085 1.8E-07 54.5 2.8 23 230-252 1-23 (183)
360 TIGR00235 udk uridine kinase. 95.6 0.0094 2E-07 55.5 3.1 26 228-253 6-31 (207)
361 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.041 9E-07 56.7 8.0 88 227-317 137-243 (449)
362 PF03308 ArgK: ArgK protein; 95.6 0.031 6.7E-07 52.8 6.4 29 227-255 28-56 (266)
363 COG0572 Udk Uridine kinase [Nu 95.6 0.011 2.5E-07 54.4 3.5 28 228-255 8-35 (218)
364 TIGR02538 type_IV_pilB type IV 95.6 0.026 5.7E-07 60.8 6.8 101 216-327 303-406 (564)
365 cd01858 NGP_1 NGP-1. Autoanti 95.6 0.14 3E-06 45.2 10.5 38 213-250 82-124 (157)
366 cd03287 ABC_MSH3_euk MutS3 hom 95.6 0.017 3.8E-07 54.2 4.8 24 227-250 30-53 (222)
367 TIGR00764 lon_rel lon-related 95.6 0.022 4.8E-07 61.7 6.2 58 208-265 17-75 (608)
368 COG0468 RecA RecA/RadA recombi 95.6 0.043 9.2E-07 53.1 7.5 39 227-265 59-97 (279)
369 COG0467 RAD55 RecA-superfamily 95.6 0.026 5.6E-07 54.6 6.2 37 227-263 22-58 (260)
370 PRK03846 adenylylsulfate kinas 95.5 0.017 3.8E-07 53.3 4.7 36 227-262 23-58 (198)
371 PF06745 KaiC: KaiC; InterPro 95.5 0.036 7.8E-07 52.3 6.9 44 220-263 7-55 (226)
372 PRK07132 DNA polymerase III su 95.5 2 4.3E-05 42.3 19.1 130 219-365 6-151 (299)
373 cd01124 KaiC KaiC is a circadi 95.5 0.016 3.5E-07 52.8 4.4 34 230-263 1-34 (187)
374 TIGR02915 PEP_resp_reg putativ 95.5 0.24 5.2E-06 52.0 13.8 43 209-251 139-185 (445)
375 PRK13765 ATP-dependent proteas 95.5 0.021 4.5E-07 61.9 5.8 57 208-264 30-87 (637)
376 PTZ00494 tuzin-like protein; P 95.5 0.19 4E-06 51.2 11.8 121 148-282 302-442 (664)
377 PRK12678 transcription termina 95.5 0.031 6.8E-07 58.7 6.6 89 227-318 415-515 (672)
378 smart00534 MUTSac ATPase domai 95.5 0.0077 1.7E-07 55.0 2.0 21 230-250 1-21 (185)
379 COG1102 Cmk Cytidylate kinase 95.5 0.011 2.4E-07 51.3 2.8 24 230-253 2-25 (179)
380 KOG1350 F0F1-type ATP synthase 95.5 0.055 1.2E-06 51.9 7.6 119 208-329 162-318 (521)
381 cd00267 ABC_ATPase ABC (ATP-bi 95.5 0.027 5.9E-07 49.8 5.5 118 227-349 24-145 (157)
382 cd02021 GntK Gluconate kinase 95.5 0.01 2.3E-07 52.0 2.8 23 230-252 1-23 (150)
383 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.027 5.8E-07 53.7 5.6 44 220-263 9-56 (237)
384 TIGR02768 TraA_Ti Ti-type conj 95.4 0.078 1.7E-06 59.1 10.0 113 216-343 356-476 (744)
385 PRK14723 flhF flagellar biosyn 95.4 0.14 3.1E-06 56.2 11.8 26 228-253 185-210 (767)
386 PRK08840 replicative DNA helic 95.4 0.18 3.8E-06 53.0 12.1 70 211-287 197-270 (464)
387 PRK14528 adenylate kinase; Pro 95.4 0.042 9E-07 50.2 6.7 24 229-252 2-25 (186)
388 PRK06904 replicative DNA helic 95.4 0.34 7.3E-06 51.0 14.1 68 213-287 203-274 (472)
389 cd01132 F1_ATPase_alpha F1 ATP 95.4 0.07 1.5E-06 51.3 8.3 87 227-318 68-173 (274)
390 TIGR02868 CydC thiol reductant 95.4 0.078 1.7E-06 57.0 9.8 25 227-251 360-384 (529)
391 CHL00060 atpB ATP synthase CF1 95.4 0.059 1.3E-06 56.0 8.3 88 227-317 160-273 (494)
392 PRK06217 hypothetical protein; 95.4 0.012 2.6E-07 53.6 2.9 24 230-253 3-26 (183)
393 TIGR02236 recomb_radA DNA repa 95.4 0.069 1.5E-06 53.1 8.6 34 220-253 83-120 (310)
394 PF03193 DUF258: Protein of un 95.4 0.023 4.9E-07 50.1 4.5 35 216-251 24-58 (161)
395 PF00406 ADK: Adenylate kinase 95.4 0.021 4.5E-07 50.2 4.4 85 233-326 1-94 (151)
396 PTZ00088 adenylate kinase 1; P 95.4 0.032 6.9E-07 52.7 5.8 23 230-252 8-30 (229)
397 cd02024 NRK1 Nicotinamide ribo 95.4 0.011 2.5E-07 53.7 2.7 23 230-252 1-23 (187)
398 KOG0735 AAA+-type ATPase [Post 95.3 0.56 1.2E-05 50.3 15.2 25 228-252 701-725 (952)
399 COG1936 Predicted nucleotide k 95.3 0.013 2.9E-07 51.5 2.9 20 230-249 2-21 (180)
400 COG2274 SunT ABC-type bacterio 95.3 0.12 2.7E-06 56.8 11.0 24 227-250 498-521 (709)
401 TIGR03574 selen_PSTK L-seryl-t 95.3 0.018 3.8E-07 55.4 4.1 26 230-255 1-26 (249)
402 COG0488 Uup ATPase components 95.3 0.14 2.9E-06 54.5 10.9 63 296-363 161-226 (530)
403 cd02020 CMPK Cytidine monophos 95.3 0.013 2.9E-07 50.9 2.9 23 230-252 1-23 (147)
404 PRK12339 2-phosphoglycerate ki 95.3 0.015 3.2E-07 53.6 3.3 25 228-252 3-27 (197)
405 COG2804 PulE Type II secretory 95.3 0.05 1.1E-06 56.2 7.3 112 217-342 246-359 (500)
406 COG2401 ABC-type ATPase fused 95.3 0.092 2E-06 52.6 8.8 42 211-252 373-433 (593)
407 COG4618 ArpD ABC-type protease 95.3 0.066 1.4E-06 55.0 7.9 26 225-250 359-384 (580)
408 PRK13948 shikimate kinase; Pro 95.3 0.017 3.7E-07 52.4 3.5 27 227-253 9-35 (182)
409 TIGR02322 phosphon_PhnN phosph 95.2 0.016 3.5E-07 52.5 3.3 25 229-253 2-26 (179)
410 cd03243 ABC_MutS_homologs The 95.2 0.016 3.4E-07 53.8 3.3 24 227-250 28-51 (202)
411 PRK13946 shikimate kinase; Pro 95.2 0.017 3.7E-07 52.6 3.5 27 227-253 9-35 (184)
412 PRK07004 replicative DNA helic 95.2 0.19 4.2E-06 52.7 11.7 55 225-286 210-265 (460)
413 PF00625 Guanylate_kin: Guanyl 95.2 0.023 5E-07 51.7 4.3 35 228-262 2-36 (183)
414 COG1224 TIP49 DNA helicase TIP 95.2 0.059 1.3E-06 52.9 7.1 50 208-257 38-94 (450)
415 PRK13949 shikimate kinase; Pro 95.2 0.017 3.7E-07 51.9 3.3 25 229-253 2-26 (169)
416 TIGR02902 spore_lonB ATP-depen 95.2 0.033 7.2E-07 59.6 6.0 45 208-252 64-110 (531)
417 cd02025 PanK Pantothenate kina 95.2 0.014 3E-07 54.8 2.9 25 230-254 1-25 (220)
418 KOG0062 ATPase component of AB 95.2 0.049 1.1E-06 55.9 6.8 121 227-349 105-260 (582)
419 COG1428 Deoxynucleoside kinase 95.2 0.017 3.6E-07 52.7 3.2 26 228-253 4-29 (216)
420 cd03240 ABC_Rad50 The catalyti 95.2 0.13 2.9E-06 47.6 9.4 23 227-249 21-43 (204)
421 COG0055 AtpD F0F1-type ATP syn 95.2 0.053 1.2E-06 53.4 6.8 100 227-329 146-268 (468)
422 TIGR01447 recD exodeoxyribonuc 95.2 0.14 3.1E-06 55.2 10.8 29 227-255 159-187 (586)
423 PRK13833 conjugal transfer pro 95.2 0.074 1.6E-06 52.8 8.0 98 219-325 135-234 (323)
424 KOG0058 Peptide exporter, ABC 95.2 0.11 2.4E-06 55.8 9.6 49 296-346 612-666 (716)
425 COG2805 PilT Tfp pilus assembl 95.2 0.18 3.8E-06 48.6 10.0 93 227-327 124-219 (353)
426 PRK14529 adenylate kinase; Pro 95.2 0.1 2.2E-06 48.9 8.4 90 230-326 2-97 (223)
427 cd00464 SK Shikimate kinase (S 95.2 0.017 3.6E-07 50.8 3.1 22 231-252 2-23 (154)
428 COG0464 SpoVK ATPases of the A 95.2 0.037 8E-07 58.9 6.3 30 227-256 275-304 (494)
429 PRK08006 replicative DNA helic 95.2 0.23 4.9E-06 52.2 12.0 68 212-286 205-276 (471)
430 KOG0736 Peroxisome assembly fa 95.1 0.11 2.4E-06 55.9 9.5 45 210-254 673-731 (953)
431 PRK14530 adenylate kinase; Pro 95.1 0.02 4.2E-07 53.7 3.7 25 228-252 3-27 (215)
432 TIGR00390 hslU ATP-dependent p 95.1 0.02 4.4E-07 58.1 3.9 48 208-255 11-74 (441)
433 COG1703 ArgK Putative periplas 95.1 0.035 7.6E-07 53.3 5.2 31 227-257 50-80 (323)
434 PRK13543 cytochrome c biogenes 95.1 0.19 4E-06 47.0 10.3 25 227-251 36-60 (214)
435 cd02023 UMPK Uridine monophosp 95.1 0.016 3.4E-07 53.6 2.9 23 230-252 1-23 (198)
436 KOG0922 DEAH-box RNA helicase 95.1 0.069 1.5E-06 56.5 7.8 290 216-523 54-394 (674)
437 KOG3347 Predicted nucleotide k 95.1 0.017 3.7E-07 49.4 2.7 25 228-252 7-31 (176)
438 COG3640 CooC CO dehydrogenase 95.1 0.033 7.1E-07 51.6 4.8 38 230-267 2-39 (255)
439 cd03213 ABCG_EPDR ABCG transpo 95.1 0.056 1.2E-06 49.7 6.5 26 227-252 34-59 (194)
440 PRK09544 znuC high-affinity zi 95.1 0.11 2.4E-06 49.9 8.8 25 227-251 29-53 (251)
441 PRK05201 hslU ATP-dependent pr 95.1 0.026 5.6E-07 57.4 4.4 48 208-255 14-77 (443)
442 PRK13894 conjugal transfer ATP 95.1 0.1 2.2E-06 51.9 8.5 95 221-324 141-237 (319)
443 TIGR03411 urea_trans_UrtD urea 95.1 0.19 4.2E-06 47.8 10.4 25 227-251 27-51 (242)
444 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.041 8.9E-07 52.1 5.7 37 227-263 19-55 (229)
445 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.03 6.5E-07 55.4 4.7 48 208-255 60-115 (358)
446 PRK10875 recD exonuclease V su 95.0 0.19 4.1E-06 54.5 11.2 109 227-343 166-301 (615)
447 cd00071 GMPK Guanosine monopho 95.0 0.016 3.4E-07 50.1 2.5 26 230-255 1-26 (137)
448 PRK05818 DNA polymerase III su 95.0 1.7 3.8E-05 41.5 16.3 114 228-364 7-148 (261)
449 PRK10751 molybdopterin-guanine 95.0 0.025 5.3E-07 50.7 3.7 29 227-255 5-33 (173)
450 KOG0738 AAA+-type ATPase [Post 95.0 0.044 9.5E-07 54.3 5.7 46 209-254 212-271 (491)
451 cd03217 ABC_FeS_Assembly ABC-t 95.0 0.061 1.3E-06 49.7 6.5 25 227-251 25-49 (200)
452 PRK15453 phosphoribulokinase; 95.0 0.036 7.8E-07 53.4 4.9 28 227-254 4-31 (290)
453 KOG0743 AAA+-type ATPase [Post 95.0 0.2 4.2E-06 51.0 10.2 26 228-253 235-260 (457)
454 PRK14493 putative bifunctional 95.0 0.034 7.3E-07 53.9 4.8 34 229-263 2-35 (274)
455 TIGR03522 GldA_ABC_ATP gliding 95.0 0.18 3.9E-06 49.9 10.1 25 227-251 27-51 (301)
456 KOG0927 Predicted transporter 94.9 0.083 1.8E-06 54.7 7.7 53 297-350 230-285 (614)
457 PF01078 Mg_chelatase: Magnesi 94.9 0.033 7.2E-07 51.1 4.4 42 209-250 3-44 (206)
458 PF13086 AAA_11: AAA domain; P 94.9 0.042 9.2E-07 51.7 5.4 36 217-252 6-41 (236)
459 PRK08972 fliI flagellum-specif 94.9 0.069 1.5E-06 54.8 7.1 86 227-318 161-264 (444)
460 COG0465 HflB ATP-dependent Zn 94.9 0.14 3E-06 54.5 9.4 46 208-253 149-208 (596)
461 COG0378 HypB Ni2+-binding GTPa 94.9 0.035 7.6E-07 50.0 4.2 37 229-265 14-50 (202)
462 PRK04328 hypothetical protein; 94.9 0.049 1.1E-06 52.3 5.6 37 227-263 22-58 (249)
463 cd03233 ABC_PDR_domain1 The pl 94.8 0.17 3.7E-06 46.8 9.1 27 227-253 32-58 (202)
464 PRK13975 thymidylate kinase; P 94.8 0.024 5.3E-07 52.1 3.4 26 229-254 3-28 (196)
465 PRK14527 adenylate kinase; Pro 94.8 0.026 5.6E-07 51.8 3.6 26 227-252 5-30 (191)
466 PF02367 UPF0079: Uncharacteri 94.8 0.038 8.2E-07 46.4 4.2 33 220-252 7-39 (123)
467 PRK00409 recombination and DNA 94.8 0.075 1.6E-06 59.4 7.7 167 227-414 326-525 (782)
468 TIGR01313 therm_gnt_kin carboh 94.8 0.018 3.9E-07 51.3 2.4 22 231-252 1-22 (163)
469 COG0563 Adk Adenylate kinase a 94.8 0.023 5E-07 51.4 3.0 23 230-252 2-24 (178)
470 COG0703 AroK Shikimate kinase 94.8 0.027 5.9E-07 50.0 3.4 29 228-256 2-30 (172)
471 cd03300 ABC_PotA_N PotA is an 94.8 0.2 4.4E-06 47.4 9.7 26 227-252 25-50 (232)
472 PRK08154 anaerobic benzoate ca 94.8 0.033 7.2E-07 55.3 4.4 26 227-252 132-157 (309)
473 PLN02924 thymidylate kinase 94.8 0.11 2.4E-06 48.7 7.7 29 227-255 15-43 (220)
474 PRK05057 aroK shikimate kinase 94.8 0.027 5.8E-07 50.7 3.4 26 228-253 4-29 (172)
475 PRK09302 circadian clock prote 94.7 0.12 2.7E-06 55.2 8.9 114 218-341 259-406 (509)
476 PF03215 Rad17: Rad17 cell cyc 94.7 0.034 7.5E-07 58.8 4.6 45 209-253 19-70 (519)
477 cd01983 Fer4_NifH The Fer4_Nif 94.7 0.04 8.7E-07 43.7 4.0 25 230-254 1-25 (99)
478 TIGR03263 guanyl_kin guanylate 94.7 0.024 5.1E-07 51.4 2.9 24 229-252 2-25 (180)
479 PHA02774 E1; Provisional 94.7 0.19 4.1E-06 53.2 9.8 37 217-253 420-459 (613)
480 PRK13764 ATPase; Provisional 94.7 0.16 3.5E-06 54.5 9.5 87 227-324 256-342 (602)
481 PRK08506 replicative DNA helic 94.7 0.34 7.3E-06 51.1 11.9 54 227-287 191-244 (472)
482 PRK00300 gmk guanylate kinase; 94.7 0.028 6E-07 52.2 3.4 26 227-252 4-29 (205)
483 PLN02200 adenylate kinase fami 94.7 0.027 6E-07 53.4 3.4 25 228-252 43-67 (234)
484 COG0194 Gmk Guanylate kinase [ 94.7 0.031 6.7E-07 50.0 3.4 25 228-252 4-28 (191)
485 TIGR00176 mobB molybdopterin-g 94.7 0.038 8.3E-07 48.8 4.1 26 230-255 1-26 (155)
486 PF09848 DUF2075: Uncharacteri 94.7 0.22 4.7E-06 50.5 10.0 35 229-263 2-38 (352)
487 PRK08533 flagellar accessory p 94.6 0.038 8.1E-07 52.4 4.2 37 227-263 23-59 (230)
488 PF13521 AAA_28: AAA domain; P 94.6 0.028 6E-07 50.1 3.2 21 231-251 2-22 (163)
489 TIGR01448 recD_rel helicase, p 94.6 0.21 4.4E-06 55.6 10.5 102 227-343 337-452 (720)
490 TIGR02012 tigrfam_recA protein 94.6 0.043 9.4E-07 54.2 4.7 37 227-263 54-90 (321)
491 PRK06761 hypothetical protein; 94.6 0.041 8.9E-07 53.4 4.4 28 228-255 3-30 (282)
492 COG1763 MobB Molybdopterin-gua 94.6 0.046 9.9E-07 48.2 4.3 36 228-263 2-37 (161)
493 PF12775 AAA_7: P-loop contain 94.6 0.11 2.4E-06 50.5 7.3 27 227-253 32-58 (272)
494 PRK05537 bifunctional sulfate 94.6 0.062 1.3E-06 57.8 6.1 47 208-254 368-418 (568)
495 TIGR01041 ATP_syn_B_arch ATP s 94.6 0.15 3.1E-06 53.1 8.6 88 227-317 140-249 (458)
496 PRK04182 cytidylate kinase; Pr 94.6 0.028 6.2E-07 50.7 3.1 23 230-252 2-24 (180)
497 TIGR01287 nifH nitrogenase iro 94.6 0.044 9.6E-07 53.5 4.7 34 229-263 1-34 (275)
498 PRK11174 cysteine/glutathione 94.6 0.16 3.4E-06 55.4 9.5 26 227-252 375-400 (588)
499 KOG1532 GTPase XAB1, interacts 94.6 0.044 9.6E-07 51.7 4.3 32 227-258 18-49 (366)
500 PF08477 Miro: Miro-like prote 94.6 0.03 6.5E-07 46.7 3.0 21 231-251 2-22 (119)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.7e-89 Score=783.63 Aligned_cols=491 Identities=40% Similarity=0.678 Sum_probs=440.2
Q ss_pred CCCcccEEeccCccccccchHHHHHHHHhhCCCcEEeeCCCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHHHHH
Q 041923 22 QNNKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDDQLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLNELL 101 (529)
Q Consensus 22 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~ 101 (529)
+.|+|||||||||+|+|++|++||+++|.++||.+|+|+++++|+.|.+++.+||++|+++|||||++|++|.||++||+
T Consensus 9 ~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~ 88 (1153)
T PLN03210 9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88 (1153)
T ss_pred CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeeEeEEeeecCcchhhcccchhHHHHHHHhhC-hHHHHHHHHHHHhhccCCCCCCCCCchhhHHhhhHH
Q 041923 102 KILECKHNYGQIVIPVFYRVDPLHVRKQIGIFGDSFLELEERF-PEKMERWRSALTEAANLPGFDSHVFRNESELIKKVV 180 (529)
Q Consensus 102 ~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~-~~~~~~w~~al~~~~~~~g~~~~~~~~e~~~i~~i~ 180 (529)
+|++|+++.+++|+||||+|+|+|||+|+|.|+++|.+++.+. .+++++||+||++++++.|+++.++.+|+++|++|+
T Consensus 89 ~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv 168 (1153)
T PLN03210 89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168 (1153)
T ss_pred HHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764 445999999999999999999988777999999999
Q ss_pred HHHhhcCCccccCCCCCCCccccccCCCCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 181 NDILEKLPKELSCNNNIHLPEVLSCNNKNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 181 ~~v~~~l~~~~~~~~~~~~p~~~~~~~~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
++|++++...+ ... .+.+|||+.++++|..+|. ++++|+|+||||+||||||+.+|+++..+|
T Consensus 169 ~~v~~~l~~~~-----~~~--------~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 169 NDVLGKLNLTP-----SND--------FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred HHHHHhhcccc-----Ccc--------cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 99999997665 332 5789999999999999986 789999999999999999999999999999
Q ss_pred cceEEEEec--cccc---C-----CCCcHHHHHHHHHHHHhcCCC-CCCCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHH
Q 041923 257 EGSCFLQNV--RKES---Q-----SPGGLARLQQKLLSEVLRDEN-VIPDIEFNFTRLSRRKALIVLDDVTCFRQIKFLI 325 (529)
Q Consensus 257 ~~~~~~~~~--~~~~---~-----~~~~~~~l~~~ll~~~~~~~~-~~~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~ 325 (529)
+..+|+... .... . .......++.+++..+..... .......+++++.++|+||||||||+.++++.+.
T Consensus 236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 998887542 1100 0 011133456666666655443 3344677889999999999999999999999999
Q ss_pred hccCCCCCCcEEEEEeCcchhhhhcCCCccceEeccCCCc-------------CCCCCcccHHHHHHHHHHHhCCChHHH
Q 041923 326 RSLDWFMPESRIIITTRDQKVLKNGGVKEKDIYEMKALEC-------------ENLPNEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 326 ~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~l~~L~~-------------~~~~~~~~~~~~~~~i~~~~~G~PLal 392 (529)
....|+++|++||||||+..++...+++ ..|+++.++. ...++ ..+.+++++|+++|+|+||||
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~--~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAHGID--HIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhcCCC--eEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCCCcHHH
Confidence 8888889999999999999998877777 8899999887 23343 568899999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCH-HhHHHHHhhccccCCCCHHHHHHHHHHcCCchhhHH
Q 041923 393 EILGCFLYGKGKEVWENAINELKRILNMEIQKVLKISFDGLDD-EQKNIFLDIACFFKGEDKEFVIKFLDACGFAAQIGI 471 (529)
Q Consensus 393 ~~~a~~L~~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l 471 (529)
+++|++|++++..+|+..+.++...++..|..+|+.||+.|++ .+|.+|+++|||+.+.+.+.+..++..++..+..++
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 9999999999999999999999988888999999999999986 599999999999999999999999988888888899
Q ss_pred HHHhhCCcEEEeCCeEEcCHHHHHHHHHHHhhcCCCCCCCcccccChhhHHHHhhcCC
Q 041923 472 SDLVDKSLIIIHGNSITMHDLLQEMGREIVRQESVNNPGERSRLWHHEDIIEVLTSNT 529 (529)
Q Consensus 472 ~~L~~~sLl~~~~~~~~mH~lvr~~a~~~~~~e~~~~~~~~~rl~~~~d~~~~l~~~~ 529 (529)
+.|+++|||+..+++|.||+|+|+||++++++++ .+|++|+|+|+++||+++|++++
T Consensus 473 ~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~ 529 (1153)
T PLN03210 473 KNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT 529 (1153)
T ss_pred HHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCc
Confidence 9999999999998999999999999999999987 78999999999999999998764
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=301.81 Aligned_cols=156 Identities=27% Similarity=0.448 Sum_probs=141.0
Q ss_pred CCCCcccEEeccCccccccchHHHHHHHHhhCCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHHH
Q 041923 21 PQNNKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLNE 99 (529)
Q Consensus 21 ~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~E 99 (529)
+..++|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.+.++|.+||++|+++|||||++|++|.||++|
T Consensus 22 ~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdE 101 (187)
T PLN03194 22 SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHE 101 (187)
T ss_pred CCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHH
Confidence 5667899999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCeeEeEEeeecCcchhhc-ccchhHHHHHHHhhChHHHHHHHHHHHhhccCCCCCCCC-CchhhHHhh
Q 041923 100 LLKILECKHNYGQIVIPVFYRVDPLHVRKQ-IGIFGDSFLELEERFPEKMERWRSALTEAANLPGFDSHV-FRNESELIK 177 (529)
Q Consensus 100 l~~~~~~~~~~~~~v~pvf~~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~-~~~e~~~i~ 177 (529)
|.+|+++. ..|+||||+|+|+|||+| .|.+ ..+++++||+||.+++++.|+++.. ..+|+++|+
T Consensus 102 L~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~----------~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e~e~i~ 167 (187)
T PLN03194 102 LALIMESK----KRVIPIFCDVKPSQLRVVDNGTC----------PDEEIRRFNWALEEAKYTVGLTFDSLKGNWSEVVT 167 (187)
T ss_pred HHHHHHcC----CEEEEEEecCCHHHhhccccCCC----------CHHHHHHHHHHHHHHhccccccCCCCCCCHHHHHH
Confidence 99999874 469999999999999997 4432 2456999999999999999997753 234999999
Q ss_pred hHHHHHhhcCCcc
Q 041923 178 KVVNDILEKLPKE 190 (529)
Q Consensus 178 ~i~~~v~~~l~~~ 190 (529)
+|++.|.++|...
T Consensus 168 ~iv~~v~k~l~~~ 180 (187)
T PLN03194 168 MASDAVIKNLIEL 180 (187)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887543
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-37 Score=339.46 Aligned_cols=284 Identities=31% Similarity=0.431 Sum_probs=244.6
Q ss_pred cccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHH---HhccCcceEEEEecccccCCCCcHHHHHHHHHHHH
Q 041923 212 VGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNK---ISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEV 286 (529)
Q Consensus 212 vGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 286 (529)
||.+..++.+.+.|. +..+++|+||||+||||||++++++ +..+|+..+|+. .++ ......++.+++..+
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk-~f~~~~iq~~Il~~l 235 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSK-EFTTRKIQQTILERL 235 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----Ecc-cccHHhHHHHHHHHh
Confidence 999999999999997 6789999999999999999999995 567899999997 344 677888999999877
Q ss_pred hcCCCCCC------CHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhh-cCCCccceEe
Q 041923 287 LRDENVIP------DIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKN-GGVKEKDIYE 359 (529)
Q Consensus 287 ~~~~~~~~------~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~-~~~~~~~~~~ 359 (529)
+....... ....+.+.|+++|+||||||||+..+|+.+...++....||+|++|||+..++.. ++.+ ..++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~--~~~~ 313 (889)
T KOG4658|consen 236 GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVD--YPIE 313 (889)
T ss_pred ccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCC--cccc
Confidence 66433111 1677888999999999999999999999999988877788999999999999988 7765 8889
Q ss_pred ccCCCc-------------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCC-CHHHHHHHHHHHhhc-------c
Q 041923 360 MKALEC-------------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGK-GKEVWENAINELKRI-------L 418 (529)
Q Consensus 360 l~~L~~-------------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~-~~~~~~~~l~~l~~~-------~ 418 (529)
+..|.. ......+..++++++++++|+|+|||+.++|+.|+.+ +..+|+.+.+.+... .
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 999887 1122223479999999999999999999999999984 677999999987654 2
Q ss_pred chhHHHHHHHhHhCCCHHhHHHHHhhccccCCC--CHHHHHHHHHHcCCc------------hhhHHHHHhhCCcEEEeC
Q 041923 419 NMEIQKVLKISFDGLDDEQKNIFLDIACFFKGE--DKEFVIKFLDACGFA------------AQIGISDLVDKSLIIIHG 484 (529)
Q Consensus 419 ~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~------------~~~~l~~L~~~sLl~~~~ 484 (529)
.+.+..++..||+.|+++.|.||+|||.||.+. +.+.+...|.++|+. ....+.+|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 467889999999999999999999999999986 899999999999954 334699999999999874
Q ss_pred -----CeEEcCHHHHHHHHHHHh
Q 041923 485 -----NSITMHDLLQEMGREIVR 502 (529)
Q Consensus 485 -----~~~~mH~lvr~~a~~~~~ 502 (529)
..+.|||+||+||..+++
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhc
Confidence 679999999999999998
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.5e-33 Score=278.16 Aligned_cols=248 Identities=30% Similarity=0.489 Sum_probs=187.8
Q ss_pred cchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH--HhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 214 VESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK--ISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 214 R~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
||.++++|.+.|. +.++|+|+|+||+||||||.+++++ +...|+.++|+. +... .....++..++..+.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKN----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-----SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-cccc----ccccccccccccccc
Confidence 7889999999987 6899999999999999999999998 888997776665 3332 233777778888877
Q ss_pred cCCCCC---CC----HHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhcCCCccceEec
Q 041923 288 RDENVI---PD----IEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNGGVKEKDIYEM 360 (529)
Q Consensus 288 ~~~~~~---~~----~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~l 360 (529)
...... .. ...+.+.|.++++|||||||++...++.+...++....|++||||||+..+....+.. ...+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~l 154 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIEL 154 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEEC
T ss_pred ccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 664322 11 6788889999999999999999999988877766666799999999998887655432 378999
Q ss_pred cCCCc-----------CC-C-CCcccHHHHHHHHHHHhCCChHHHHHHHHHhcC-CCHHHHHHHHHHHhhcc------ch
Q 041923 361 KALEC-----------EN-L-PNEVGYQELSEKIINYAQGVPLALEILGCFLYG-KGKEVWENAINELKRIL------NM 420 (529)
Q Consensus 361 ~~L~~-----------~~-~-~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~-~~~~~~~~~l~~l~~~~------~~ 420 (529)
.+|+. .. . .......+.+++|++.|+|+||||+++|++|+. .+..+|...++.+.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~ 234 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDR 234 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99997 11 1 111345678899999999999999999999954 25677998888776533 47
Q ss_pred hHHHHHHHhHhCCCHHhHHHHHhhccccCCC--CHHHHHHHHHHcCCch
Q 041923 421 EIQKVLKISFDGLDDEQKNIFLDIACFFKGE--DKEFVIKFLDACGFAA 467 (529)
Q Consensus 421 ~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~--~~~~l~~l~~~~~~~~ 467 (529)
.+..++..||+.|+++.|.||++||+||.+. +.+.++.+|.++|+..
T Consensus 235 ~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 235 SVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 7999999999999999999999999999886 6999999999877654
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.83 E-value=1e-21 Score=171.86 Aligned_cols=129 Identities=31% Similarity=0.508 Sum_probs=110.2
Q ss_pred EEeccCccccccchHHHHHHHHhhC--CCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHHHHHHHH
Q 041923 28 VFLSFSRAETRDSFTSHLRSALCQK--SIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLNELLKIL 104 (529)
Q Consensus 28 vFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~ 104 (529)
|||||++.+.+..|+++|..+|+++ |+++|+++ |+.+|..+.++|.++|++|+++|+|||++|+.|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444567999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHhCC--CeeEeEEeeecCcchh-hcccchhHHHHHHHhhCh-----HHHHHHHHHHH
Q 041923 105 ECKHNYG--QIVIPVFYRVDPLHVR-KQIGIFGDSFLELEERFP-----EKMERWRSALT 156 (529)
Q Consensus 105 ~~~~~~~--~~v~pvf~~v~p~~vr-~~~~~~~~~~~~~~~~~~-----~~~~~w~~al~ 156 (529)
++....+ ..|+||||++.+++++ .+.+.|...|.....-.. .....|++++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9997654 7899999999999999 788888887766544322 23778887753
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.83 E-value=2.7e-20 Score=162.95 Aligned_cols=135 Identities=39% Similarity=0.611 Sum_probs=113.8
Q ss_pred cccEEeccCc-cccccchHHHHHHHHhhCCCcEEeeCCCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHHHHHHH
Q 041923 25 KYDVFLSFSR-AETRDSFTSHLRSALCQKSIETFIDDQLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLNELLKI 103 (529)
Q Consensus 25 ~~dvFis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~ 103 (529)
.|||||||++ .+....|+.+|...|...|+.+|.|+....+... .+|.++|++|+++|+|+|++|..|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 4999999999 4555789999999999999999999844333333 3999999999999999999999999999999999
Q ss_pred HHHHHh-CCCeeEeEEeeecCcchhhcccchhHHHHHHHhhChHHH--HHHHHHHHhhcc
Q 041923 104 LECKHN-YGQIVIPVFYRVDPLHVRKQIGIFGDSFLELEERFPEKM--ERWRSALTEAAN 160 (529)
Q Consensus 104 ~~~~~~-~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~--~~w~~al~~~~~ 160 (529)
+++... ....||||+++..|+++..+.+.++..+.....+..+.. ..|+.++..+++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence 998754 667899999999998999999999999888755555544 589888776643
No 7
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.67 E-value=1.1e-14 Score=166.38 Aligned_cols=279 Identities=16% Similarity=0.238 Sum_probs=175.6
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
+..+|-|+..++.|... ...+++.|+|++|.||||++.+++++. +.++|+ .+...+ .+...+...++..+.
T Consensus 13 ~~~~~~R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~-~l~~~d---~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWY-SLDESD---NQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEE-ecCccc---CCHHHHHHHHHHHHH
Confidence 56789999877777643 378999999999999999999998642 346666 454332 333444444444442
Q ss_pred cCCC-------------CCCC----HHHHHHHhC--CCcEEEEEcCCCCH---H---HHHHHHhccCCCCCCcEEEEEeC
Q 041923 288 RDEN-------------VIPD----IEFNFTRLS--RRKALIVLDDVTCF---R---QIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 288 ~~~~-------------~~~~----~~~l~~~l~--~~~~LLVlDdv~~~---~---~l~~l~~~~~~~~~gs~IliTtR 342 (529)
.... .... ...+...+. +.+++|||||++.. . .+..+.... .++.++|||||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~lv~~sR 160 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLTLVVLSR 160 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeEEEEEeC
Confidence 1110 0011 222333332 67999999999642 2 344444433 46778999999
Q ss_pred cchhhhhcC--CCccceEecc----CCCc--------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHH
Q 041923 343 DQKVLKNGG--VKEKDIYEMK----ALEC--------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWE 408 (529)
Q Consensus 343 ~~~~~~~~~--~~~~~~~~l~----~L~~--------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~ 408 (529)
...-..... .. ....++. +|+. ..... ....+.+.+|.+.|+|+|+++..++..+...+.. ..
T Consensus 161 ~~~~~~~~~l~~~-~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~ 237 (903)
T PRK04841 161 NLPPLGIANLRVR-DQLLEIGSQQLAFDHQEAQQFFDQRLSS-PIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LH 237 (903)
T ss_pred CCCCCchHhHHhc-CcceecCHHhCCCCHHHHHHHHHhccCC-CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hh
Confidence 842221100 11 0233333 5554 11111 2234667889999999999999998877543210 11
Q ss_pred HHHHHHhhccchhHHHHHHHh-HhCCCHHhHHHHHhhccccCCCCHHHHHHHHHHcCCchhhHHHHHhhCCcEEEe----
Q 041923 409 NAINELKRILNMEIQKVLKIS-FDGLDDEQKNIFLDIACFFKGEDKEFVIKFLDACGFAAQIGISDLVDKSLIIIH---- 483 (529)
Q Consensus 409 ~~l~~l~~~~~~~i~~~l~~s-~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~sLl~~~---- 483 (529)
.....+....+..+...+... ++.|+++.+.++..+|+++ .++.+.+..+.. .......++.|.+.+|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~~~ 314 (903)
T PRK04841 238 DSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMDDS 314 (903)
T ss_pred hhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeecCC
Confidence 111222111234566655444 8999999999999999986 677777666653 33457789999999997543
Q ss_pred CCeEEcCHHHHHHHHHHHhhc
Q 041923 484 GNSITMHDLLQEMGREIVRQE 504 (529)
Q Consensus 484 ~~~~~mH~lvr~~a~~~~~~e 504 (529)
+.+|++|++++++.+..+..+
T Consensus 315 ~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 315 GEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred CCEEehhHHHHHHHHHHHHhc
Confidence 237999999999999998665
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.62 E-value=2.8e-16 Score=129.41 Aligned_cols=87 Identities=30% Similarity=0.482 Sum_probs=75.1
Q ss_pred EEeccCccccccchHHHHHHHHhhCCCcEEeeCCCCCCCCCCcchHHHHhhcceEEEEeccccccchhhHHHHHHHHHHH
Q 041923 28 VFLSFSRAETRDSFTSHLRSALCQKSIETFIDDQLIRGDDISESLPDTIAASSISIIIFSERYASSGRCLNELLKILECK 107 (529)
Q Consensus 28 vFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~s~~c~~El~~~~~~~ 107 (529)
|||||+++| ..++.+|...|+.+|+++|+|.++..|+++.+.|.++|++|+.+|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 6699999999999999999999889999999999999999999999999999999999999988833
Q ss_pred HhCCCeeEeEEee
Q 041923 108 HNYGQIVIPVFYR 120 (529)
Q Consensus 108 ~~~~~~v~pvf~~ 120 (529)
.+..|+||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 44579999844
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.48 E-value=3.8e-12 Score=134.32 Aligned_cols=282 Identities=16% Similarity=0.230 Sum_probs=178.3
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
+.+.|-|.+.++.|.... +.|.+.|+.++|.|||||+.+++. ....-..+.|+. +.+ ...+...+...++..+.
T Consensus 18 ~~~~v~R~rL~~~L~~~~-~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls-lde---~dndp~rF~~yLi~al~ 91 (894)
T COG2909 18 PDNYVVRPRLLDRLRRAN-DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS-LDE---SDNDPARFLSYLIAALQ 91 (894)
T ss_pred cccccccHHHHHHHhcCC-CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee-cCC---ccCCHHHHHHHHHHHHH
Confidence 567888887666665532 789999999999999999999998 444445567765 322 25567777777777776
Q ss_pred cCCCCCCC-----------------HHHHHHHhC--CCcEEEEEcCCC---CH---HHHHHHHhccCCCCCCcEEEEEeC
Q 041923 288 RDENVIPD-----------------IEFNFTRLS--RRKALIVLDDVT---CF---RQIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 288 ~~~~~~~~-----------------~~~l~~~l~--~~~~LLVlDdv~---~~---~~l~~l~~~~~~~~~gs~IliTtR 342 (529)
.-.+.... ...+...+. .++++|||||.+ ++ +.++.|+... .++-.+++|||
T Consensus 92 ~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~lvv~SR 168 (894)
T COG2909 92 QATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLTLVVTSR 168 (894)
T ss_pred HhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeEEEEEec
Confidence 43321111 223333332 368999999995 22 2355555554 47889999999
Q ss_pred cchhhhhcCCC-ccceEeccC----CCc-------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCC-CHHHHHH
Q 041923 343 DQKVLKNGGVK-EKDIYEMKA----LEC-------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGK-GKEVWEN 409 (529)
Q Consensus 343 ~~~~~~~~~~~-~~~~~~l~~----L~~-------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~-~~~~~~~ 409 (529)
...-+...... .....++.. ++. ......+.....++.+.+.++|.+-||..++=.+++. +.+.-
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~-- 246 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS-- 246 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH--
Confidence 86443221110 001111111 111 1111112334567889999999999999998888743 22211
Q ss_pred HHHHHhhccchhHHH-HHHHhHhCCCHHhHHHHHhhccccCCCCHHHHHHHHHHcCCchhhHHHHHhhCCcEEEe----C
Q 041923 410 AINELKRILNMEIQK-VLKISFDGLDDEQKNIFLDIACFFKGEDKEFVIKFLDACGFAAQIGISDLVDKSLIIIH----G 484 (529)
Q Consensus 410 ~l~~l~~~~~~~i~~-~l~~s~~~L~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~sLl~~~----~ 484 (529)
...+... ...+.+ ..+..++.||++.|.+++.+|++.. ++-+...++.. .......+++|.+++|.-.. +
T Consensus 247 -~~~LsG~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg--~~ng~amLe~L~~~gLFl~~Ldd~~ 321 (894)
T COG2909 247 -LRGLSGA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTG--EENGQAMLEELERRGLFLQRLDDEG 321 (894)
T ss_pred -hhhccch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhc--CCcHHHHHHHHHhCCCceeeecCCC
Confidence 1111111 122333 3455688999999999999999853 44444444432 22455569999999998755 6
Q ss_pred CeEEcCHHHHHHHHHHHhhcC
Q 041923 485 NSITMHDLLQEMGREIVRQES 505 (529)
Q Consensus 485 ~~~~mH~lvr~~a~~~~~~e~ 505 (529)
++|++|.|+.+|.+...+.+.
T Consensus 322 ~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 322 QWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred ceeehhHHHHHHHHhhhcccc
Confidence 789999999999999988764
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.48 E-value=1e-12 Score=145.79 Aligned_cols=292 Identities=16% Similarity=0.244 Sum_probs=177.6
Q ss_pred cccccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEe----cccccCCCCcHHHHHH
Q 041923 210 HLVGVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQN----VRKESQSPGGLARLQQ 280 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~----~~~~~~~~~~~~~l~~ 280 (529)
.++||+.+++.|...+. ...++.|.|.+|||||+|+.++...+.+.+. .++.. ...... ...+....+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~--~~i~~~f~q~~~~ip-l~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRG--YFIKGKFDQFERNIP-LSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccce--eeeHhhcccccCCCc-hHHHHHHHH
Confidence 37999999999999997 6779999999999999999999998766622 22211 111111 223333333
Q ss_pred HHHHHHhcCCCC-------------------CC--------------------C-----------HHHHHHHh-CCCcEE
Q 041923 281 KLLSEVLRDENV-------------------IP--------------------D-----------IEFNFTRL-SRRKAL 309 (529)
Q Consensus 281 ~ll~~~~~~~~~-------------------~~--------------------~-----------~~~l~~~l-~~~~~L 309 (529)
.+..++..+.+. .. . ...+.... +.+|.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 333333111110 00 0 12222222 246999
Q ss_pred EEEcCCC--CHHH---HHHHHhccC--CC-CCCcEEEEEeCcchhhhhcCCCccceEeccCCCcC--------CCCC-cc
Q 041923 310 IVLDDVT--CFRQ---IKFLIRSLD--WF-MPESRIIITTRDQKVLKNGGVKEKDIYEMKALECE--------NLPN-EV 372 (529)
Q Consensus 310 LVlDdv~--~~~~---l~~l~~~~~--~~-~~gs~IliTtR~~~~~~~~~~~~~~~~~l~~L~~~--------~~~~-~~ 372 (529)
+|+||+. |... ++.++.... .+ ......+.|.+...-.-.........+.|.||+.. .++. ..
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 9999994 3333 444444432 00 11222222333221111122233478999999981 1111 13
Q ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHhcCC-------CHHHHHHHHHHHhhc-cchhHHHHHHHhHhCCCHHhHHHHHhh
Q 041923 373 GYQELSEKIINYAQGVPLALEILGCFLYGK-------GKEVWENAINELKRI-LNMEIQKVLKISFDGLDDEQKNIFLDI 444 (529)
Q Consensus 373 ~~~~~~~~i~~~~~G~PLal~~~a~~L~~~-------~~~~~~~~l~~l~~~-~~~~i~~~l~~s~~~L~~~~~~~l~~l 444 (529)
...+..+.|++++.|+|+.+.++-..+.+. +...|..-...+... ..+++...+...++.||...++++...
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 446788999999999999999999998764 233444443333321 123366678999999999999999999
Q ss_pred ccccCCCCHHHHHHHHHHcCCchhhHHHHHhhCCcEEEe----------CCe-E-EcCHHHHHHHHHHHhhc
Q 041923 445 ACFFKGEDKEFVIKFLDACGFAAQIGISDLVDKSLIIIH----------GNS-I-TMHDLLQEMGREIVRQE 504 (529)
Q Consensus 445 a~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~sLl~~~----------~~~-~-~mH~lvr~~a~~~~~~e 504 (529)
||+++.++.+.|..++..........+......++|.+. .-. | ..|++||+.|...+.++
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 999999999999998875433333344444445555542 111 3 34999999998776554
No 11
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=1e-09 Score=113.31 Aligned_cols=265 Identities=17% Similarity=0.117 Sum_probs=148.4
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
++.|+||+.++++|...|. ..+.+.|+|++|+|||++++.+++++....+ ..+...++.. ......++.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~----~~~~~~~~~ 104 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI----DRTRYAIFS 104 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc----CCCHHHHHH
Confidence 5679999999999999985 3467899999999999999999998766542 2223333332 234556677
Q ss_pred HHHHHHhcCCC-CC-CC----HHHHHHHhC--CCcEEEEEcCCCCH------HHHHHHHhccCCCC-CCcEEEEEeCcch
Q 041923 281 KLLSEVLRDEN-VI-PD----IEFNFTRLS--RRKALIVLDDVTCF------RQIKFLIRSLDWFM-PESRIIITTRDQK 345 (529)
Q Consensus 281 ~ll~~~~~~~~-~~-~~----~~~l~~~l~--~~~~LLVlDdv~~~------~~l~~l~~~~~~~~-~gs~IliTtR~~~ 345 (529)
.++..+..... .. .. ...+.+.+. +++++||||+++.. +.+..+........ .+..+|.++.+..
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 77777754221 11 11 344455554 45689999999754 34555554332221 1333566665543
Q ss_pred hhhhcC-----CCccceEeccCCCc------------CCCCCcccHHHHHHHHHHHh----CCChHHHHHHHHHhc----
Q 041923 346 VLKNGG-----VKEKDIYEMKALEC------------ENLPNEVGYQELSEKIINYA----QGVPLALEILGCFLY---- 400 (529)
Q Consensus 346 ~~~~~~-----~~~~~~~~l~~L~~------------~~~~~~~~~~~~~~~i~~~~----~G~PLal~~~a~~L~---- 400 (529)
+..... .-....+.++|++. .......-..+.++.+++.+ |..+.|+..+-....
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322110 00113566777665 11101011123333444433 446666655533211
Q ss_pred -C---CCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhcccc----CCCCHHHHHHH----HHHcCCc--
Q 041923 401 -G---KGKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFF----KGEDKEFVIKF----LDACGFA-- 466 (529)
Q Consensus 401 -~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~----~~~~~~~l~~l----~~~~~~~-- 466 (529)
+ -+.+....+++.. -...+...+..|+..++.+|..++... .......+... ....+..
T Consensus 265 ~~~~~I~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~ 337 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS-------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPR 337 (394)
T ss_pred cCCCCcCHHHHHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcC
Confidence 1 1334444444433 123345678899999999988877553 22333333322 1222322
Q ss_pred ----hhhHHHHHhhCCcEEEe
Q 041923 467 ----AQIGISDLVDKSLIIIH 483 (529)
Q Consensus 467 ----~~~~l~~L~~~sLl~~~ 483 (529)
....++.|...|||...
T Consensus 338 ~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 338 THTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cHHHHHHHHHHHHhcCCeEEE
Confidence 23468999999999865
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.21 E-value=1.7e-10 Score=114.68 Aligned_cols=238 Identities=16% Similarity=0.123 Sum_probs=134.7
Q ss_pred CcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQK 281 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (529)
..|||+++.+++|..++. ..+.+.|+|++|+|||+||+.+++.+...+ ........ .....+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~----~~~~~~~~----~~~~~l~~- 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL----KITSGPAL----EKPGDLAA- 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----EEeccchh----cCchhHHH-
Confidence 579999999999999886 245689999999999999999999875432 11111100 11111111
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccC-------------------CCCCCcEEEEE
Q 041923 282 LLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLD-------------------WFMPESRIIIT 340 (529)
Q Consensus 282 ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~-------------------~~~~gs~IliT 340 (529)
.+..+ +...+|++|+++. ....+.+...+. ...+.+-|..|
T Consensus 75 ~l~~~------------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t 136 (305)
T TIGR00635 75 ILTNL------------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT 136 (305)
T ss_pred HHHhc------------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec
Confidence 11111 1234667777642 122222221110 01123445556
Q ss_pred eCcchhhhhc--CCCccceEeccCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHH
Q 041923 341 TRDQKVLKNG--GVKEKDIYEMKALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVW 407 (529)
Q Consensus 341 tR~~~~~~~~--~~~~~~~~~l~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~ 407 (529)
|+...+.... ... ..+.+.+++. ..... .-..+.+..|++.|+|.|..+..++..+.
T Consensus 137 ~~~~~l~~~l~sR~~--~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~~------- 206 (305)
T TIGR00635 137 TRAGMLTSPLRDRFG--IILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRVR------- 206 (305)
T ss_pred CCccccCHHHHhhcc--eEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHHH-------
Confidence 6654332211 112 4567777776 11111 22246678899999999977655554331
Q ss_pred HHHHH-HHhhccch---hHHHHHHHhHhCCCHHhHHHHH-hhccccC-CCCHHHHHHHHHHcCCchhhHHH-HHhhCCcE
Q 041923 408 ENAIN-ELKRILNM---EIQKVLKISFDGLDDEQKNIFL-DIACFFK-GEDKEFVIKFLDACGFAAQIGIS-DLVDKSLI 480 (529)
Q Consensus 408 ~~~l~-~l~~~~~~---~i~~~l~~s~~~L~~~~~~~l~-~la~f~~-~~~~~~l~~l~~~~~~~~~~~l~-~L~~~sLl 480 (529)
..+.. .......+ .....+...+..|++.++..|. .++.+.. +...+.+...+..+.......++ .|++.+||
T Consensus 207 ~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 207 DFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCc
Confidence 11000 00001111 1122245567788888888777 4455544 35788888888777777777788 69999999
Q ss_pred EEe
Q 041923 481 IIH 483 (529)
Q Consensus 481 ~~~ 483 (529)
...
T Consensus 287 ~~~ 289 (305)
T TIGR00635 287 QRT 289 (305)
T ss_pred ccC
Confidence 755
No 13
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.16 E-value=2.7e-08 Score=101.62 Aligned_cols=264 Identities=17% Similarity=0.164 Sum_probs=141.3
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCc-----ceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-----GSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~ 276 (529)
++.|+||+.++++|...|. ..+.+.|+|++|+|||++++.+++++..... ..+.+.++.. .....
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~----~~~~~ 89 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI----LDTLY 89 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC----CCCHH
Confidence 5679999999999999986 3468999999999999999999997754322 2233333332 23345
Q ss_pred HHHHHHHHHHhc---CCCC--CCC---HHHHHHHhC--CCcEEEEEcCCCCH-----HHHHHHHhcc--CCC-CCCcEEE
Q 041923 277 RLQQKLLSEVLR---DENV--IPD---IEFNFTRLS--RRKALIVLDDVTCF-----RQIKFLIRSL--DWF-MPESRII 338 (529)
Q Consensus 277 ~l~~~ll~~~~~---~~~~--~~~---~~~l~~~l~--~~~~LLVlDdv~~~-----~~l~~l~~~~--~~~-~~gs~Il 338 (529)
.++..++..+.. ..+. .+. ...+.+.+. +++++||||+++.. +.+..+.... ... +....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 666666666632 1111 111 344445553 56789999999755 2244444331 111 1233455
Q ss_pred EEeCcchhhhhc------CCCccceEeccCCCc-----------C-CCCC---cccHHHHHHHHHHHhCCChHHHHHHHH
Q 041923 339 ITTRDQKVLKNG------GVKEKDIYEMKALEC-----------E-NLPN---EVGYQELSEKIINYAQGVPLALEILGC 397 (529)
Q Consensus 339 iTtR~~~~~~~~------~~~~~~~~~l~~L~~-----------~-~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~ 397 (529)
+++......... ... ...+.++|.+. . .... .+...+.+.+++..+.|.|..+..+..
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~-~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLC-EEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred EEECCcchHhhcCHHHhccCC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555443321111 111 13466777665 0 1111 012223444555666677743322211
Q ss_pred H-h----c-C---CCHHHHHHHHHHHhhccchhHHHHHHHhHhCCCHHhHHHHHhhccccC----CCCHHHHHHH----H
Q 041923 398 F-L----Y-G---KGKEVWENAINELKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFFK----GEDKEFVIKF----L 460 (529)
Q Consensus 398 ~-L----~-~---~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~----~~~~~~l~~l----~ 460 (529)
. . . + -+.+....+.+.+ -.......+..|+..++.++..++.... .+....+... .
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~-------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKI-------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 1 0 1 1233333333322 1233456778999988888877664322 2233333331 1
Q ss_pred HHcCC------chhhHHHHHhhCCcEEEe
Q 041923 461 DACGF------AAQIGISDLVDKSLIIIH 483 (529)
Q Consensus 461 ~~~~~------~~~~~l~~L~~~sLl~~~ 483 (529)
...+. .....+..|...|||+..
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11121 123468999999999976
No 14
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.15 E-value=2.6e-10 Score=114.35 Aligned_cols=240 Identities=18% Similarity=0.162 Sum_probs=138.8
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
...|+|++..++.+..++. ..+.+.|+|++|+|||+||+.+++.+...+ .......... ...+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~----~~~~~~~~~~-~~~l~---- 94 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI----RITSGPALEK-PGDLA---- 94 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe----EEEecccccC-hHHHH----
Confidence 4679999999999988775 356899999999999999999999875432 1111111000 11111
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HHHHHHHhccCC-------------------CCCCcEEEE
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQIKFLIRSLDW-------------------FMPESRIII 339 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~l~~l~~~~~~-------------------~~~gs~Ili 339 (529)
.++. .+ +...+|++|+++.. ...+.+...+.. ..+.+-|..
T Consensus 95 ~~l~-----------------~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~a 156 (328)
T PRK00080 95 AILT-----------------NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGA 156 (328)
T ss_pred HHHH-----------------hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEee
Confidence 1111 11 23457777877532 121222111100 012344555
Q ss_pred EeCcchhhhhc--CCCccceEeccCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHH
Q 041923 340 TTRDQKVLKNG--GVKEKDIYEMKALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEV 406 (529)
Q Consensus 340 TtR~~~~~~~~--~~~~~~~~~l~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~ 406 (529)
|++...+.... ... ..+++.+++. ..... .-..+.+..|++.|+|.|..+..+...+. .
T Consensus 157 t~~~~~l~~~L~sRf~--~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~ 228 (328)
T PRK00080 157 TTRAGLLTSPLRDRFG--IVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----D 228 (328)
T ss_pred cCCcccCCHHHHHhcC--eeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----H
Confidence 66644332211 112 4567777776 11111 22346788999999999976655554431 1
Q ss_pred HHHHHHHHhhccc---hhHHHHHHHhHhCCCHHhHHHHH-hhccccCC-CCHHHHHHHHHHcCCchhhHHH-HHhhCCcE
Q 041923 407 WENAINELKRILN---MEIQKVLKISFDGLDDEQKNIFL-DIACFFKG-EDKEFVIKFLDACGFAAQIGIS-DLVDKSLI 480 (529)
Q Consensus 407 ~~~~l~~l~~~~~---~~i~~~l~~s~~~L~~~~~~~l~-~la~f~~~-~~~~~l~~l~~~~~~~~~~~l~-~L~~~sLl 480 (529)
|.... .-..... ......+...+..|++..+..|. .+..|..+ ...+.+...+..+.......++ .|++.+||
T Consensus 229 ~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li 307 (328)
T PRK00080 229 FAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCc
Confidence 11110 0000111 12233455667789988888886 56666544 5888998888877777777888 99999999
Q ss_pred EEe
Q 041923 481 IIH 483 (529)
Q Consensus 481 ~~~ 483 (529)
+..
T Consensus 308 ~~~ 310 (328)
T PRK00080 308 QRT 310 (328)
T ss_pred ccC
Confidence 755
No 15
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.15 E-value=7.8e-11 Score=115.69 Aligned_cols=272 Identities=19% Similarity=0.228 Sum_probs=181.8
Q ss_pred HHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCC-CCCHHHHH
Q 041923 222 ESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENV-IPDIEFNF 300 (529)
Q Consensus 222 ~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~~~~~~l~ 300 (529)
...+...|.+.++|.|||||||++.++.+ +...|...+++.+...... ...+...+...+.-.... ......+.
T Consensus 8 ~~~~~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD----~~~v~~~~ag~~gl~~~~g~~~~~~~~ 82 (414)
T COG3903 8 RDLLTALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD----PALVFPTLAGALGLHVQPGDSAVDTLV 82 (414)
T ss_pred hhhhhhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc----hhHhHHHHHhhcccccccchHHHHHHH
Confidence 33444688999999999999999999999 8889999998887776544 233333333323322222 22356778
Q ss_pred HHhCCCcEEEEEcCCCCHH-HHHHHHhccCCCCCCcEEEEEeCcchhhhhcCCCccceEeccCCCcCC------------
Q 041923 301 TRLSRRKALIVLDDVTCFR-QIKFLIRSLDWFMPESRIIITTRDQKVLKNGGVKEKDIYEMKALECEN------------ 367 (529)
Q Consensus 301 ~~l~~~~~LLVlDdv~~~~-~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~l~~L~~~~------------ 367 (529)
.+..+++.++|+||..+.. +...+...+....+.-.|+.|+|.... +..+..+.+++|+..+
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l-----~~ge~~~~~~~L~~~d~a~~lf~~ra~~ 157 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL-----VAGEVHRRVPSLSLFDEAIELFVCRAVL 157 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc-----ccccccccCCccccCCchhHHHHHHHHH
Confidence 8888999999999996442 222333333333456678999997533 3344677777777622
Q ss_pred ----CCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHH----Hhhc------cchhHHHHHHHhHhCC
Q 041923 368 ----LPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINE----LKRI------LNMEIQKVLKISFDGL 433 (529)
Q Consensus 368 ----~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~----l~~~------~~~~i~~~l~~s~~~L 433 (529)
..-.........+|++..+|.|++|..+++..+.....+....++. +... ........+..||.-|
T Consensus 158 ~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lL 237 (414)
T COG3903 158 VALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALL 237 (414)
T ss_pred hccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhh
Confidence 1111233466788999999999999999999988665544333332 2221 1244567899999999
Q ss_pred CHHhHHHHHhhccccCCCCHHHHHHHHHH-----cCCchhhHHHHHhhCCcEEEe----CCeEEcCHHHHHHHHHHHhh
Q 041923 434 DDEQKNIFLDIACFFKGEDKEFVIKFLDA-----CGFAAQIGISDLVDKSLIIIH----GNSITMHDLLQEMGREIVRQ 503 (529)
Q Consensus 434 ~~~~~~~l~~la~f~~~~~~~~l~~l~~~-----~~~~~~~~l~~L~~~sLl~~~----~~~~~mH~lvr~~a~~~~~~ 503 (529)
+..++-.+..++.|...|..+........ +.+.....+..|++++++... .-+|+.-+-++.|+.+.+.+
T Consensus 238 tgwe~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 238 TGWERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred hhHHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999977633222211 222344567889999998765 22467777777777766654
No 16
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.09 E-value=4.5e-10 Score=106.86 Aligned_cols=181 Identities=19% Similarity=0.262 Sum_probs=91.4
Q ss_pred ccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHH------HHHH
Q 041923 211 LVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARL------QQKL 282 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~~l 282 (529)
|+||+.++++|.+++. ..+.+.|+|+.|+|||+|++++.+.........+|+........ ...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE--SSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH--HHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh--hHHHHHHHHHHHHHHH
Confidence 8999999999999998 47999999999999999999999987554334444433222111 111111 1111
Q ss_pred HHHHhcCCC--------------CCCCHHHHHHHhC--CCcEEEEEcCCCCHH-----------HHHHHHhccCCCCCCc
Q 041923 283 LSEVLRDEN--------------VIPDIEFNFTRLS--RRKALIVLDDVTCFR-----------QIKFLIRSLDWFMPES 335 (529)
Q Consensus 283 l~~~~~~~~--------------~~~~~~~l~~~l~--~~~~LLVlDdv~~~~-----------~l~~l~~~~~~~~~gs 335 (529)
...+..... .......+.+.+. +++++||+||++... .+..++...... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CCc
Confidence 111111100 1111444444444 245999999996433 123333332222 333
Q ss_pred EEEEEeCcchhhhh------cCCCccceEeccCCCc-----------CCCCCcccHHHHHHHHHHHhCCChHHHHH
Q 041923 336 RIIITTRDQKVLKN------GGVKEKDIYEMKALEC-----------ENLPNEVGYQELSEKIINYAQGVPLALEI 394 (529)
Q Consensus 336 ~IliTtR~~~~~~~------~~~~~~~~~~l~~L~~-----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~ 394 (529)
.++++.....+... ........+.+++++. ..........+..++++..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 44455444333322 0112224589999976 11111012456678999999999998865
No 17
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.97 E-value=4e-08 Score=96.23 Aligned_cols=133 Identities=23% Similarity=0.373 Sum_probs=85.4
Q ss_pred CCcccccchhH---HhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKV---GEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l---~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
-+.+||-+..+ .-|..++. ......+||+||+||||||+.++......|...- ....+..++...+
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s---------Av~~gvkdlr~i~ 93 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS---------AVTSGVKDLREII 93 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec---------cccccHHHHHHHH
Confidence 45677777665 34555555 6778889999999999999999987766543211 1123344433332
Q ss_pred HHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEE--EeCcchhhhh-cCCCccce
Q 041923 283 LSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIII--TTRDQKVLKN-GGVKEKDI 357 (529)
Q Consensus 283 l~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~Ili--TtR~~~~~~~-~~~~~~~~ 357 (529)
-.. -.....+++.+|++|.|+ +..+-+.|++.+. .|..|+| ||.|+...-. .-.....+
T Consensus 94 e~a-------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~v 157 (436)
T COG2256 94 EEA-------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARV 157 (436)
T ss_pred HHH-------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhhe
Confidence 111 122345789999999996 6677788888764 7777776 6776543111 00112278
Q ss_pred EeccCCCc
Q 041923 358 YEMKALEC 365 (529)
Q Consensus 358 ~~l~~L~~ 365 (529)
+++++|+.
T Consensus 158 f~lk~L~~ 165 (436)
T COG2256 158 FELKPLSS 165 (436)
T ss_pred eeeecCCH
Confidence 99999987
No 18
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=5.9e-09 Score=93.50 Aligned_cols=134 Identities=20% Similarity=0.277 Sum_probs=75.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCc-----ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHH-
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFE-----GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTR- 302 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~- 302 (529)
|++.|+|.+|+||||++..++.++..... ..+++...+.... ......+...+............ ..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD-SNNSRSLADLLFDQLPESIAPIE--ELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh-ccccchHHHHHHHhhccchhhhH--HHHHHHH
Confidence 68999999999999999999998766542 2344444444333 11112333333333322211111 112222
Q ss_pred hCCCcEEEEEcCCCCHHH---------HHHHH-hccCC-CCCCcEEEEEeCcchhhhhc-CCCccceEeccCCCc
Q 041923 303 LSRRKALIVLDDVTCFRQ---------IKFLI-RSLDW-FMPESRIIITTRDQKVLKNG-GVKEKDIYEMKALEC 365 (529)
Q Consensus 303 l~~~~~LLVlDdv~~~~~---------l~~l~-~~~~~-~~~gs~IliTtR~~~~~~~~-~~~~~~~~~l~~L~~ 365 (529)
...++++||||++++... +..++ ..+.. ..+++++|||+|........ .......+++.+++.
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 256899999999963322 12222 12221 24789999999986652211 122225788888874
No 19
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.93 E-value=1.2e-07 Score=92.38 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=94.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC---HHHHHHH-
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD---IEFNFTR- 302 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~l~~~- 302 (529)
+...++|+|++|+|||||++.+++.+...-...+++.+. ......+...+...++........ ...+...
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADFGLETEGRDKAALLRELEDFL 115 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 466899999999999999999998865321111122111 234456666776665443222211 2222222
Q ss_pred ----hCCCcEEEEEcCCCCH--HHHHHHHhccCC---CCCCcEEEEEeCcchhhhhcCC--------CccceEeccCCCc
Q 041923 303 ----LSRRKALIVLDDVTCF--RQIKFLIRSLDW---FMPESRIIITTRDQKVLKNGGV--------KEKDIYEMKALEC 365 (529)
Q Consensus 303 ----l~~~~~LLVlDdv~~~--~~l~~l~~~~~~---~~~gs~IliTtR~~~~~~~~~~--------~~~~~~~l~~L~~ 365 (529)
..+++.+||+||++.. ..++.+...... ......|++|.... ....... .....+.+++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 2567899999999753 344444322111 11233455665432 2111100 0014577888876
Q ss_pred -----------C--C-CCCcccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 041923 366 -----------E--N-LPNEVGYQELSEKIINYAQGVPLALEILGCFL 399 (529)
Q Consensus 366 -----------~--~-~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 399 (529)
. . .....-..+..+.|++.++|+|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 1 1 11112335788899999999999999988876
No 20
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.86 E-value=9.9e-09 Score=100.97 Aligned_cols=144 Identities=24% Similarity=0.344 Sum_probs=101.2
Q ss_pred CCCCcccEEeccCccccccchHHHHHHHHhhCCCcEEeeC-CCCCCCCCCcchHHHHhhcceEEEEecccccc-------
Q 041923 21 PQNNKYDVFLSFSRAETRDSFTSHLRSALCQKSIETFIDD-QLIRGDDISESLPDTIAASSISIIIFSERYAS------- 92 (529)
Q Consensus 21 ~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S~~y~~------- 92 (529)
....+.||||||+..- ....++-|.-.|..+|++||+|- .+..| .+.+.+.+.|+.++.+|.|+|||...
T Consensus 608 ~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AG-KFdssLlkni~aAkhFiLVLtP~sLDr~lnD~n 685 (832)
T KOG3678|consen 608 MLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAG-KFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDN 685 (832)
T ss_pred cccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcc-cccHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence 4567899999998554 45688888889999999999998 66655 45688999999999999999999753
Q ss_pred -chhhHHHHHHHHHHHHhCCCeeEeEEeeecCcchhhcccchhHHHHHHHhhChHHHHHHHHHHHhhccCCCCCCCCCch
Q 041923 93 -SGRCLNELLKILECKHNYGQIVIPVFYRVDPLHVRKQIGIFGDSFLELEERFPEKMERWRSALTEAANLPGFDSHVFRN 171 (529)
Q Consensus 93 -s~~c~~El~~~~~~~~~~~~~v~pvf~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 171 (529)
-.|...||..+++|.++ |+|||-. .|+ +.++.....+.+.-+....|.......
T Consensus 686 CeDWVHKEl~~Afe~~KN----IiPI~D~-----------aFE---------~Pt~ed~iPnDirmi~kyNGvKWvHdY- 740 (832)
T KOG3678|consen 686 CEDWVHKELKCAFEHQKN----IIPIFDT-----------AFE---------FPTKEDQIPNDIRMITKYNGVKWVHDY- 740 (832)
T ss_pred HHHHHHHHHHHHHHhcCC----eeeeecc-----------ccc---------CCCchhcCcHHHHHHHhccCeeeehhh-
Confidence 35888899999988754 9999843 111 111111112223333445565555544
Q ss_pred hhHHhhhHHHHHhhcCCccc
Q 041923 172 ESELIKKVVNDILEKLPKEL 191 (529)
Q Consensus 172 e~~~i~~i~~~v~~~l~~~~ 191 (529)
+...+.+++.-+...++.+.
T Consensus 741 QdA~maKvvRFitGe~nRtt 760 (832)
T KOG3678|consen 741 QDACMAKVVRFITGELNRTT 760 (832)
T ss_pred HHHHHHHHHHHHhccccCCC
Confidence 56677777777777666654
No 21
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.69 E-value=8.6e-08 Score=87.71 Aligned_cols=46 Identities=26% Similarity=0.509 Sum_probs=34.9
Q ss_pred cccccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 210 HLVGVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.|+||+.++++|...|. ..+.+.|+|.+|+|||+|+.+++.++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999993 78999999999999999999999988777
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=2e-06 Score=92.10 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=82.7
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
.+.+||.+..++.|.+++.. ...+.++|..|+||||+|+.+++.+...-... .. ..+....+..+..
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~--~~--------PCG~C~sCr~I~~ 84 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT--SQ--------PCGVCRACREIDE 84 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC--CC--------CCcccHHHHHHhc
Confidence 46799999999999999983 45678999999999999999998764211000 00 0000000111100
Q ss_pred H----Hhc-CC---CCCCCHHHHHHH-----hCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcchhhhh
Q 041923 285 E----VLR-DE---NVIPDIEFNFTR-----LSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQKVLKN 349 (529)
Q Consensus 285 ~----~~~-~~---~~~~~~~~l~~~-----l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~ 349 (529)
. +.. +. ..+..+..+.+. ..++.-++|||+++. ...++.|+..+......+++|+||.+..-+..
T Consensus 85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 0 000 00 000011111111 123456889999974 45577788777655667888888877433221
Q ss_pred cCCCccceEeccCCCc
Q 041923 350 GGVKEKDIYEMKALEC 365 (529)
Q Consensus 350 ~~~~~~~~~~l~~L~~ 365 (529)
--......+.+.+++.
T Consensus 165 TIrSRCq~f~Fk~Ls~ 180 (830)
T PRK07003 165 TVLSRCLQFNLKQMPA 180 (830)
T ss_pred hhhhheEEEecCCcCH
Confidence 1111115677777765
No 23
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.65 E-value=3.7e-06 Score=87.01 Aligned_cols=165 Identities=21% Similarity=0.306 Sum_probs=94.1
Q ss_pred CCcccccchhHHh---HHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGE---IESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~---l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
.+.|||++..+.. |.+++. ....+.|+|++|+||||||+.+++.....|. .+. . . ..+...+ +.+
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~-a--~---~~~~~~i-r~i 80 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALS-A--V---TSGVKDL-REV 80 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-c--c---cccHHHH-HHH
Confidence 4679999988777 888777 5567899999999999999999987654332 111 1 1 1111111 112
Q ss_pred HHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEE--EeCcchh--hhhcCCCccc
Q 041923 283 LSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIII--TTRDQKV--LKNGGVKEKD 356 (529)
Q Consensus 283 l~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~Ili--TtR~~~~--~~~~~~~~~~ 356 (529)
+.... .....+++.+|+||+++. ..+.+.|+..+. .+..++| ||.+... .... .....
T Consensus 81 i~~~~------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL-~SR~~ 144 (413)
T PRK13342 81 IEEAR------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL-LSRAQ 144 (413)
T ss_pred HHHHH------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH-hccce
Confidence 11110 001145778999999974 455666666654 3554544 3444321 1111 11115
Q ss_pred eEeccCCCcC-----------CC-CCc-ccHHHHHHHHHHHhCCChHHHHHHHHH
Q 041923 357 IYEMKALECE-----------NL-PNE-VGYQELSEKIINYAQGVPLALEILGCF 398 (529)
Q Consensus 357 ~~~l~~L~~~-----------~~-~~~-~~~~~~~~~i~~~~~G~PLal~~~a~~ 398 (529)
.+.+.+++.. .. ... ....+..+.+++.++|.+..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 6778887760 00 000 122455677888888888766544433
No 24
>PF14516 AAA_35: AAA-like domain
Probab=98.63 E-value=2e-05 Score=79.01 Aligned_cols=272 Identities=13% Similarity=0.118 Sum_probs=140.6
Q ss_pred CCCcccccchhHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccC-CCCcHHHHHHHHHH
Q 041923 207 NKNHLVGVESKVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQ-SPGGLARLQQKLLS 284 (529)
Q Consensus 207 ~~~~fvGR~~~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~l~~~ll~ 284 (529)
+.+.+|.|...-+++.+.+. ....+.|.|+-.+|||+|...+.+.....- ..+...++..... .......+.+.+..
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~-~~~v~id~~~~~~~~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQG-YRCVYIDLQQLGSAIFSDLEQFLRWFCE 87 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCC-CEEEEEEeecCCCcccCCHHHHHHHHHH
Confidence 35678899966777777766 699999999999999999999999876542 2233334444322 13345555554444
Q ss_pred HHhcCCCC-----------CCC----HHHHHHHh---CCCcEEEEEcCCCCHH----HHHHHHhccC-C-----CC--CC
Q 041923 285 EVLRDENV-----------IPD----IEFNFTRL---SRRKALIVLDDVTCFR----QIKFLIRSLD-W-----FM--PE 334 (529)
Q Consensus 285 ~~~~~~~~-----------~~~----~~~l~~~l---~~~~~LLVlDdv~~~~----~l~~l~~~~~-~-----~~--~g 334 (529)
.+...... ... ...+.+.+ .+++++|+||+++..- ..+.++..+. | .. ..
T Consensus 88 ~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 88 EISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 43322210 001 22233322 2589999999996321 1122222111 0 00 11
Q ss_pred cEEEEEeCc--chhhh-----hcCCCccceEeccCCCc-------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 041923 335 SRIIITTRD--QKVLK-----NGGVKEKDIYEMKALEC-------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLY 400 (529)
Q Consensus 335 s~IliTtR~--~~~~~-----~~~~~~~~~~~l~~L~~-------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~ 400 (529)
...+|.... ..... ...+. ..++|++++. ..... .......++|...+||+|..+..++..+.
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg--~~i~L~~Ft~~ev~~L~~~~~~-~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIG--QPIELPDFTPEEVQELAQRYGL-EFSQEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccc--cceeCCCCCHHHHHHHHHhhhc-cCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122222221 11110 01222 4566777766 11111 11233488999999999999999999996
Q ss_pred CCCHHHHHHHHHHHhhccchhHHHHHHHhHhCC--CHHhHHHHHhhccccCCCCHHHHHHHHHHcCCchhhHHHHHhhCC
Q 041923 401 GKGKEVWENAINELKRILNMEIQKVLKISFDGL--DDEQKNIFLDIACFFKGEDKEFVIKFLDACGFAAQIGISDLVDKS 478 (529)
Q Consensus 401 ~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~~~L--~~~~~~~l~~la~f~~~~~~~~l~~l~~~~~~~~~~~l~~L~~~s 478 (529)
..... .+..+..-.... ..-..-|+.-...| .++.+.++..+-.-.... .........|...|
T Consensus 245 ~~~~~-~~~l~~~a~~~~-~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~~-------------~~~~~~~~~L~~~G 309 (331)
T PF14516_consen 245 EEQIT-LEQLLEEAITDN-GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEPV-------------DLDSDDIYKLESLG 309 (331)
T ss_pred HccCc-HHHHHHHHHHhc-ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCCc-------------ccChHHHHHHHHCC
Confidence 63211 222222211100 11111222222233 223333333222211111 11234567899999
Q ss_pred cEEEeCCeEEc-CHHHHHHH
Q 041923 479 LIIIHGNSITM-HDLLQEMG 497 (529)
Q Consensus 479 Ll~~~~~~~~m-H~lvr~~a 497 (529)
||...++.+.. -++.|++-
T Consensus 310 LV~~~~~~~~~~n~iY~~yF 329 (331)
T PF14516_consen 310 LVKRDGNQLEVRNPIYRQYF 329 (331)
T ss_pred eEEEeCCEEEEEcHHHHHHh
Confidence 99999888777 56766664
No 25
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.63 E-value=2.9e-07 Score=80.28 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=70.4
Q ss_pred cccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcC
Q 041923 212 VGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRD 289 (529)
Q Consensus 212 vGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 289 (529)
+|++..+..+...+. ..+.+.|+|.+|+|||+|++.+++.+..... .+++.+...... ...........
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~-~v~~~~~~~~~~-~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGA-PFLYLNASDLLE-GLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCC-CeEEEehhhhhh-hhHHHHHhhhh-------
Confidence 478889999999887 4889999999999999999999998754323 333333322111 00000000000
Q ss_pred CCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HH---HHHHHhccCCC---CCCcEEEEEeCcch
Q 041923 290 ENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQ---IKFLIRSLDWF---MPESRIIITTRDQK 345 (529)
Q Consensus 290 ~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~---l~~l~~~~~~~---~~gs~IliTtR~~~ 345 (529)
............++.+||+||++.. .. +..+....... ..+..+|+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0001112223456789999999853 22 33333332221 35778888887643
No 26
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.62 E-value=5e-06 Score=89.64 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=66.4
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhcc-----Cc-ceEEEEecccccCCCCc
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRN-----FE-GSCFLQNVRKESQSPGG 274 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~~~~~~ 274 (529)
++.+.||+.|+++|...|. ...++.|+|.+|.|||++++.+.+++... .+ ..+...++... ..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L----st 829 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV----VH 829 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc----CC
Confidence 5789999999999999987 23467799999999999999999876432 22 22333333332 23
Q ss_pred HHHHHHHHHHHHhcCCC--CCCC---HHHHHHHhC---CCcEEEEEcCCCC
Q 041923 275 LARLQQKLLSEVLRDEN--VIPD---IEFNFTRLS---RRKALIVLDDVTC 317 (529)
Q Consensus 275 ~~~l~~~ll~~~~~~~~--~~~~---~~~l~~~l~---~~~~LLVlDdv~~ 317 (529)
...+...+..++....+ .... ...+...+. +...+||||+++.
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~ 880 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDY 880 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhh
Confidence 44455555555533332 1112 233333332 2346899999973
No 27
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.60 E-value=2.5e-06 Score=86.05 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=40.7
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+.++|++..++.|.+++. ..+.+.|+|++|+|||++|+.+++.+..
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3679999999999999988 3347899999999999999999998754
No 28
>PF13173 AAA_14: AAA domain
Probab=98.59 E-value=4.6e-07 Score=77.60 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=72.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
.+++.|.|+.|+|||||+++++++.. .-...+++ +..... ...... .. ..+.+.+....++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi-~~~~~~-----~~~~~~--~~----------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI-NFDDPR-----DRRLAD--PD----------LLEYFLELIKPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceee-ccCCHH-----HHHHhh--hh----------hHHHHHHhhccCC
Confidence 57899999999999999999998765 22233333 222111 100000 00 1122333334478
Q ss_pred EEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc----CCCccceEeccCCCc
Q 041923 308 ALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG----GVKEKDIYEMKALEC 365 (529)
Q Consensus 308 ~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~----~~~~~~~~~l~~L~~ 365 (529)
.+|+||++.....|...+..+....+..+|++|+.+....... .......+++.||+.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf 124 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSF 124 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCH
Confidence 8999999987777776666655445678999999886555321 122225677877763
No 29
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.58 E-value=2.2e-06 Score=85.78 Aligned_cols=168 Identities=18% Similarity=0.210 Sum_probs=91.7
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
-..++|++..++.|..++. ..+.+.|+|.+|+|||++++.+++.+... +...+...+... ......+ ...+.
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~----~~~~~~~-~~~i~ 90 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD----ERGIDVI-RNKIK 90 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc----ccchHHH-HHHHH
Confidence 3569999999999999987 45568999999999999999999986433 222111111111 1111111 11111
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcch-hhhhcCCCccceEecc
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQK-VLKNGGVKEKDIYEMK 361 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~l~ 361 (529)
......+ .....+-++++|+++. .+..+.|...+....+.+.+|+++.... +.... ......+++.
T Consensus 91 ~~~~~~~----------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l-~sr~~~~~~~ 159 (319)
T PRK00440 91 EFARTAP----------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPI-QSRCAVFRFS 159 (319)
T ss_pred HHHhcCC----------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhH-HHHhheeeeC
Confidence 1111000 0012356899999963 3344555555554456677777764321 11111 0011456777
Q ss_pred CCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHH
Q 041923 362 ALECEN-----------LPNEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 362 ~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal 392 (529)
+++... ... .-..+.+..+++.++|.+.-+
T Consensus 160 ~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 160 PLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 776510 011 112355667777777776653
No 30
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.6e-05 Score=78.65 Aligned_cols=118 Identities=19% Similarity=0.271 Sum_probs=82.3
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCcce-EEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGS-CFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~ 280 (529)
+..+.+|+.+++++...|. .+..+.|+|.+|+|||+.++.+.+++....... +...|+.. .....++..
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~----~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLE----LRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeee----CCCHHHHHH
Confidence 4559999999999999887 444599999999999999999999987775554 45555555 345667777
Q ss_pred HHHHHHhcCCC-CCCC---HHHHHHHhC--CCcEEEEEcCCCCH-----HHHHHHHhccC
Q 041923 281 KLLSEVLRDEN-VIPD---IEFNFTRLS--RRKALIVLDDVTCF-----RQIKFLIRSLD 329 (529)
Q Consensus 281 ~ll~~~~~~~~-~~~~---~~~l~~~l~--~~~~LLVlDdv~~~-----~~l~~l~~~~~ 329 (529)
.++..+..... ..+. ...+.+.+. ++.+++|||+++.. +.+-.|.....
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~ 151 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG 151 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc
Confidence 77776653222 2222 555555554 47899999999632 34445555433
No 31
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=8.3e-06 Score=82.34 Aligned_cols=183 Identities=12% Similarity=0.092 Sum_probs=102.7
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccC--cceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNF--EGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
...++|.+...+.|.+.+. -...+.++|+.|+||++||..+++.+-.+- .....-....... ..+.....+.+
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~--~~~~c~~c~~i 95 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA--IDPDHPVARRI 95 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc--CCCCChHHHHH
Confidence 4789999999999999988 245688999999999999999999763211 1110000000000 00000111111
Q ss_pred HHHHh-------c---CC-----C--CCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEE
Q 041923 283 LSEVL-------R---DE-----N--VIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRII 338 (529)
Q Consensus 283 l~~~~-------~---~~-----~--~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~Il 338 (529)
..... . +. . .++.+..+.+.+. +.+-++|+|+++ +....+.|+..+.....++.+|
T Consensus 96 ~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~I 175 (365)
T PRK07471 96 AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFL 175 (365)
T ss_pred HccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 10000 0 00 0 1111333333332 456799999997 5666777877776555677777
Q ss_pred EEeCcch-hhhhcCCCccceEeccCCCc--------CCCCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 339 ITTRDQK-VLKNGGVKEKDIYEMKALEC--------ENLPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 339 iTtR~~~-~~~~~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
++|.+.. +.... ......+.+.+++. ..... . ..+....+++.++|+|+....+
T Consensus 176 L~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~-~-~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 176 LVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPD-L-PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhccc-C-CHHHHHHHHHHcCCCHHHHHHH
Confidence 7777653 32221 22226788888887 11111 1 1122367899999999865444
No 32
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=1.6e-06 Score=79.64 Aligned_cols=166 Identities=20% Similarity=0.229 Sum_probs=84.7
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
-++|||-++.+..+.-++. ....+.+||+||+||||||.-+++++...|. ..+...... ..++..++.
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~----~~sg~~i~k-~~dl~~il~ 97 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK----ITSGPAIEK-AGDLAAILT 97 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE----EEECCC--S-CHHHHHHHH
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE----eccchhhhh-HHHHHHHHH
Confidence 5789999999998877665 2467999999999999999999998876653 111111111 122222211
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCC------CCC-------------cEEEE
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWF------MPE-------------SRIII 339 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~------~~g-------------s~Ili 339 (529)
.+ +++-+|.+|.++ +..+-+.|.+.+..+ +.| +.|=.
T Consensus 98 ---------------------~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 98 ---------------------NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp ---------------------T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred ---------------------hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 12 245588889997 444555565554311 111 12334
Q ss_pred EeCcchhhhhcCCCccceEeccCCCc----------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 041923 340 TTRDQKVLKNGGVKEKDIYEMKALEC----------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLY 400 (529)
Q Consensus 340 TtR~~~~~~~~~~~~~~~~~l~~L~~----------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~ 400 (529)
|||...+.....-.-.-...+...+. ...-...-..+.+.+|++++.|-|.-..-+-..++
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 66654332221111001223333333 11111144567888999999999975554444443
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=98.54 E-value=3.8e-06 Score=83.90 Aligned_cols=122 Identities=17% Similarity=0.288 Sum_probs=71.6
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc-cCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR-NFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
-..++|.+..++.|.+++. ..+.+.++|++|+||||+|..+++.+.. .|...+.-.+... ..+.. ..+....
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd----~~~~~-~vr~~i~ 86 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD----DRGID-VVRNKIK 86 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc----cccHH-HHHHHHH
Confidence 4678999999999988877 4566889999999999999999998633 3332222211111 11222 1222222
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
........ ...++.-++|||+++. ...-+.|...+......+++++++..
T Consensus 87 ~~~~~~~~---------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~ 138 (319)
T PLN03025 87 MFAQKKVT---------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNT 138 (319)
T ss_pred HHHhcccc---------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCC
Confidence 11110000 0023466899999974 33445555555444566777776654
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.9e-06 Score=89.78 Aligned_cols=175 Identities=18% Similarity=0.180 Sum_probs=96.3
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...+||.+...+.|.+++. -...+.++|+.|+||||+|+.+++.+........- +.+.....+.+..
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~----------pCg~C~sC~~I~~ 83 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTST----------PCEVCATCKAVNE 83 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCC----------CCccCHHHHHHhc
Confidence 4679999999999999998 24577999999999999999999876422110000 0000000111100
Q ss_pred HHhc-----CC---CCCCCHHHHHHH-----hCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhh
Q 041923 285 EVLR-----DE---NVIPDIEFNFTR-----LSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKN 349 (529)
Q Consensus 285 ~~~~-----~~---~~~~~~~~l~~~-----l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~ 349 (529)
.... .. ..+..+..+... ..++.-++|+|+++ +....+.|+..+....+++.+|++|.+..-...
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0000 00 000011111111 12456689999997 445677777777655567778887766322211
Q ss_pred cCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChHHH
Q 041923 350 GGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 350 ~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PLal 392 (529)
.-......+++.+++..... ......+....|++.++|.+..+
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 10122267888888761100 00122355566777888876433
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=5.9e-06 Score=86.91 Aligned_cols=175 Identities=15% Similarity=0.125 Sum_probs=96.6
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhc--cCcceEEEEeccccc-C-CCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISR--NFEGSCFLQNVRKES-Q-SPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~-~-~~~~~~~l~~ 280 (529)
-+.++|-+...+.|.+++. -...+.++|++|+||||+|+.+++.+.. .+...|+.+...... . ...++..
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~e--- 89 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLE--- 89 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEE---
Confidence 4679999999999999887 2345699999999999999999997642 122223322100000 0 0000000
Q ss_pred HHHHHHhcC-CCCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hhhhhcC
Q 041923 281 KLLSEVLRD-ENVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KVLKNGG 351 (529)
Q Consensus 281 ~ll~~~~~~-~~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~ 351 (529)
+... ...+..+..+.+.+ .+++-++|||+++ +...++.|+..+....+.+.+|++|... .+.....
T Consensus 90 -----l~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 90 -----IDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred -----ecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000 00011122222222 2456689999997 4456777877776555566666665443 3222211
Q ss_pred CCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHH
Q 041923 352 VKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 352 ~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal 392 (529)
.....+++.+++... ... ....+.+..|++.++|.+.-+
T Consensus 165 -SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 -SRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred -cceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 112678888887611 111 123456677888888888544
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.52 E-value=3e-06 Score=80.33 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=30.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..+.+.|+|.+|+|||+|+..+++.+..+.....|+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 4567899999999999999999998776655556654
No 37
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=9.1e-06 Score=85.97 Aligned_cols=177 Identities=16% Similarity=0.154 Sum_probs=94.1
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...+||-+..++.|.+++. -...+.++|..|+||||+|+.+++.+...-...- ........+...-...+..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~-----~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGE-----GGITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccc-----ccCCCCCCcccHHHHHHHc
Confidence 5679999999999999998 2346789999999999999999997643110000 0000000000001111100
Q ss_pred H-------HhcC-CCCCCCHHHHHHH-----hCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 E-------VLRD-ENVIPDIEFNFTR-----LSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~-------~~~~-~~~~~~~~~l~~~-----l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
. +... ...++.+..+.+. ..++.-++|||+++ +....+.|+..+......+++|++|.+ ..+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 0000 0001112222222 13456689999997 456788888888766667776666554 33322
Q ss_pred hcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHH
Q 041923 349 NGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLA 391 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLa 391 (529)
.. ......+.+.+++... ... ....+..+.|++.++|.|.-
T Consensus 170 TI-rSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 170 TV-LSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AHEVNALRLLAQAAQGSMRD 221 (700)
T ss_pred HH-HHHHHhcccCCCChHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 21 1111556666666511 011 11223446677777777753
No 38
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1e-05 Score=82.16 Aligned_cols=172 Identities=17% Similarity=0.188 Sum_probs=93.0
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|.+..++.|.+.+.. ...+.++|++|+||||+|+.+++.+........ . +.+.......+..
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~------~----pc~~c~~c~~~~~ 84 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS------N----PCRKCIICKEIEK 84 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC------C----CCCCCHHHHHHhc
Confidence 46799999999999998872 345789999999999999999997642110000 0 0000000000000
Q ss_pred HH----hc-CC---CCCCCHHHHHHHh-----CCCcEEEEEcCCCCH--HHHHHHHhccCCCCCCcEEEEEeCcch-hhh
Q 041923 285 EV----LR-DE---NVIPDIEFNFTRL-----SRRKALIVLDDVTCF--RQIKFLIRSLDWFMPESRIIITTRDQK-VLK 348 (529)
Q Consensus 285 ~~----~~-~~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~~~--~~l~~l~~~~~~~~~gs~IliTtR~~~-~~~ 348 (529)
.. .. +. ........+.+.+ .+++-++|+|+++.. ...+.++..+....+.+++|++|.+.. +..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 00 00 00 0001111222221 234569999999744 356677777765556777777765532 222
Q ss_pred hcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHH
Q 041923 349 NGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLA 391 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLa 391 (529)
.. ......+++.+++... ... .-..+.+..|++.++|.|..
T Consensus 165 tI-~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 165 TI-LSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HH-HhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 21 1111578888887610 011 12234556677777776653
No 39
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=6.7e-07 Score=76.81 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=70.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC----cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC----HHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF----EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD----IEF 298 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~----~~~ 298 (529)
+.+.+.|+|.+|+|||+++.++++.+...+ ...+++..+.. ......+...++..+......... ...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence 357899999999999999999999875431 33344444433 235778888888888766554222 455
Q ss_pred HHHHhCCCc-EEEEEcCCCCH---HHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 299 NFTRLSRRK-ALIVLDDVTCF---RQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 299 l~~~l~~~~-~LLVlDdv~~~---~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
+.+.+.+.+ .+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 556665544 59999999754 34555544433 567778877765
No 40
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=5.5e-06 Score=90.43 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=99.7
Q ss_pred CCcccccchhHHhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHhccCc---ceEEEEe---------------cc
Q 041923 208 KNHLVGVESKVGEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKISRNFE---GSCFLQN---------------VR 266 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---~~~~~~~---------------~~ 266 (529)
...+||-+..++.|.+++. + ...+.++|++|+||||+|+.+++.+..... ..|..+. +.
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 4679999999999999887 3 344589999999999999999997643210 0011100 00
Q ss_pred cccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-
Q 041923 267 KESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD- 343 (529)
Q Consensus 267 ~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~- 343 (529)
..+ ...... .+.+...+. ..-..++.-++|||+++ +.+..+.|+..+......+++|++|.+
T Consensus 95 Aas--~~kVDd-IReLie~v~------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~ 159 (944)
T PRK14949 95 AAS--RTKVDD-TRELLDNVQ------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDP 159 (944)
T ss_pred ccc--ccCHHH-HHHHHHHHH------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCc
Confidence 000 011111 122221110 01123567799999997 556788888887766667777666554
Q ss_pred chhhhhcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChHHHH
Q 041923 344 QKVLKNGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPLALE 393 (529)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PLal~ 393 (529)
..+..... .....+++.+++..... ......+.+..|++.++|.|.-+.
T Consensus 160 ~kLl~TIl-SRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 160 QKLPVTVL-SRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred hhchHHHH-HhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 33332211 11267889988761100 001224566778888888885433
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=1.8e-06 Score=81.79 Aligned_cols=54 Identities=17% Similarity=0.361 Sum_probs=40.1
Q ss_pred Ccccc--cchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 209 NHLVG--VESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 209 ~~fvG--R~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
+.|++ .+..++.+.+++. ..+.+.|+|.+|+|||+||+.++++........+++
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 55663 3446777777764 678999999999999999999999876544334444
No 42
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.3e-05 Score=79.95 Aligned_cols=168 Identities=17% Similarity=0.244 Sum_probs=99.1
Q ss_pred CcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhc-----cCcceEEEEecccccCCCCcHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISR-----NFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
..++|-+...+.|.+.+. -.....++|+.|+|||++|..+++.+.. .++....+....+. .-.... .+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~---~i~v~~-ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKK---SIGVDD-IR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCC---CCCHHH-HH
Confidence 467898888999999987 3567789999999999999999997532 22222222211111 112222 22
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcchhh-hhcCCCccce
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQKVL-KNGGVKEKDI 357 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~ 357 (529)
.+...+... -..+++=++|+|+++ +....+.|+..+....+++.+|++|.+...+ ... ......
T Consensus 80 ~~~~~~~~~------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI-~SRc~~ 146 (313)
T PRK05564 80 NIIEEVNKK------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI-KSRCQI 146 (313)
T ss_pred HHHHHHhcC------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH-Hhhcee
Confidence 222211110 012344566677765 6667888988888777888888888764322 211 111157
Q ss_pred EeccCCCcCCCCCc------ccHHHHHHHHHHHhCCChHHHH
Q 041923 358 YEMKALECENLPNE------VGYQELSEKIINYAQGVPLALE 393 (529)
Q Consensus 358 ~~l~~L~~~~~~~~------~~~~~~~~~i~~~~~G~PLal~ 393 (529)
+++.+++....... ....+.++.++..++|.|.-+.
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHHH
Confidence 77777766111000 0113446678889999886543
No 43
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.6e-05 Score=82.93 Aligned_cols=170 Identities=19% Similarity=0.179 Sum_probs=92.8
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhcc----C-----------------cceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRN----F-----------------EGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~----f-----------------~~~~~~~ 263 (529)
-+.+||.+...+.|...+.. ...+.++|++|+||||+|+.+++.+... + .....+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el- 91 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL- 91 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE-
Confidence 46799999988888888772 2447899999999999999999875321 0 011111
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~l~~l~~~~~~~~~gs~IliTt 341 (529)
+. .+ ..+...+ +.+...... .-..+++-++|+|+++.. +..+.|+..+....+.+.+|++|
T Consensus 92 ~a--a~--~~gid~i-R~i~~~~~~------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 92 DA--AS--NRGIDEI-RKIRDAVGY------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred eC--cc--cCCHHHH-HHHHHHHhh------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 00 00 1112111 111111100 011245679999999743 45666777665444455555555
Q ss_pred Ccc-hhhhhcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCC-hHHHHHHHH
Q 041923 342 RDQ-KVLKNGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGV-PLALEILGC 397 (529)
Q Consensus 342 R~~-~~~~~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~-PLal~~~a~ 397 (529)
.++ .+.... ......+++.+++... ... .-..+....|++.++|. +.++..+-.
T Consensus 155 tn~~kl~~~L-~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 155 TNLEKVPPTI-ISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CChHhhhHHH-hcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 442 222221 1122677888887611 111 12235566777766544 555555544
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=98.41 E-value=7.1e-06 Score=86.66 Aligned_cols=165 Identities=19% Similarity=0.210 Sum_probs=91.8
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQK 281 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (529)
...++|.+..++.|.+|+. ..+.+.|+|++|+||||+|..+++++. |+ +...+... ... ......
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielnasd----~r~-~~~i~~ 83 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNASD----QRT-ADVIER 83 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcccc----ccc-HHHHHH
Confidence 4679999999999999987 278999999999999999999999863 22 22222211 111 122222
Q ss_pred HHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH------HHHHHHHhccCCCCCCcEEEEEeCcchhhhh-cCCCc
Q 041923 282 LLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF------RQIKFLIRSLDWFMPESRIIITTRDQKVLKN-GGVKE 354 (529)
Q Consensus 282 ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~------~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~-~~~~~ 354 (529)
+......... ....++-+||||+++.. ..+..+...+. ..+..||+|+.+..-... .-...
T Consensus 84 ~i~~~~~~~s----------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr 151 (482)
T PRK04195 84 VAGEAATSGS----------LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNA 151 (482)
T ss_pred HHHHhhccCc----------ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhcc
Confidence 2222211100 01136789999999743 23555555443 234456666644221111 00011
Q ss_pred cceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHHH
Q 041923 355 KDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLALEI 394 (529)
Q Consensus 355 ~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~~ 394 (529)
...+++.+++... ... .-..+....|++.++|....+..
T Consensus 152 ~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 152 CLMIEFKRLSTRSIVPVLKRICRKEGI-ECDDEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1556777776510 011 11235567777777776655543
No 45
>PTZ00202 tuzin; Provisional
Probab=98.40 E-value=1.8e-06 Score=86.33 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=57.1
Q ss_pred CCcccccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
...|+||+.++.+|...|. ..+++.|.|++|+|||||++.+..... ...++.+.+ +..++++.+
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr~L 329 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLRSV 329 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHHHH
Confidence 5789999999999999996 356999999999999999999997653 235554432 468888888
Q ss_pred HHHHhcC
Q 041923 283 LSEVLRD 289 (529)
Q Consensus 283 l~~~~~~ 289 (529)
+..++..
T Consensus 330 L~ALGV~ 336 (550)
T PTZ00202 330 VKALGVP 336 (550)
T ss_pred HHHcCCC
Confidence 8888863
No 46
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.40 E-value=1.8e-06 Score=83.37 Aligned_cols=137 Identities=20% Similarity=0.364 Sum_probs=80.5
Q ss_pred CCcccccchhHHh---HHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGE---IESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~---l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
-..+||.+..+.+ |.+++. ..+.+.+||++|+||||||+.++..-+..- ..|+. .........+...+.++-
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~ife~a 213 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDIFEQA 213 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHHHHHH
Confidence 3567777766554 333343 778899999999999999999998654432 22332 222222123333332222
Q ss_pred HHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEE--EeCcchhhhh-cCCCccce
Q 041923 283 LSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIII--TTRDQKVLKN-GGVKEKDI 357 (529)
Q Consensus 283 l~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~Ili--TtR~~~~~~~-~~~~~~~~ 357 (529)
- -...+.++|.+|.+|.|+ +..|-+.|++... .|..++| ||.|+...-. .-+....+
T Consensus 214 q---------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 214 Q---------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred H---------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchhHHHHhccce
Confidence 1 122356789999999996 4555666776653 6776665 7777543111 11111156
Q ss_pred EeccCCCc
Q 041923 358 YEMKALEC 365 (529)
Q Consensus 358 ~~l~~L~~ 365 (529)
+-|++|..
T Consensus 276 fvLekL~~ 283 (554)
T KOG2028|consen 276 FVLEKLPV 283 (554)
T ss_pred eEeccCCH
Confidence 66777765
No 47
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=9.7e-06 Score=86.68 Aligned_cols=46 Identities=33% Similarity=0.397 Sum_probs=40.2
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+||.+..++.|.+++. -...+.++|..|+||||+|+.+++.+.
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4679999999999999998 235789999999999999999998753
No 48
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.7e-05 Score=80.46 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhcc---------------------CcceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRN---------------------FEGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 263 (529)
...++|-+..++.|...+.. ...+.++|+.|+||||+|+.+++.+... |...+.+.
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieid 94 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEID 94 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEee
Confidence 46799999999999999873 3357899999999999999999876421 11111111
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
.. + ..+... .+.++..+.. .-..+++-++|+|+++ +....+.|+..+......+.+|++|
T Consensus 95 -aa--s--~~gvd~-ir~ii~~~~~------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 95 -AA--S--RTGVEE-TKEILDNIQY------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred -cc--c--ccCHHH-HHHHHHHHHh------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 00 0 111111 1111111100 0123456799999997 4556778888777555666666555
Q ss_pred Cc-chhhhhcCCCccceEeccCCCc
Q 041923 342 RD-QKVLKNGGVKEKDIYEMKALEC 365 (529)
Q Consensus 342 R~-~~~~~~~~~~~~~~~~l~~L~~ 365 (529)
.+ ..+.... ......+++.+++.
T Consensus 157 td~~kil~tI-~SRc~~~~f~~Ls~ 180 (546)
T PRK14957 157 TDYHKIPVTI-LSRCIQLHLKHISQ 180 (546)
T ss_pred CChhhhhhhH-HHheeeEEeCCCCH
Confidence 44 3333221 11116778888765
No 49
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=2e-05 Score=82.04 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=95.8
Q ss_pred CCcccccchhHHhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHhcc---------------------CcceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKISRN---------------------FEGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 263 (529)
...+||-+..++.|.+.+. . ...+.++|+.|+||||+|+.+++.+-.. +...+.+.
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 5679999999999998887 2 3478999999999999999999864221 11112221
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
.. + ..+... .+.+....... -..++.-++|+|+++ +.+..+.|+..+....+.+.+|++|
T Consensus 92 -aa--s--~~~vdd-IR~Iie~~~~~------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 92 -AA--S--NTSVDD-IKVILENSCYL------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred -cc--c--CCCHHH-HHHHHHHHHhc------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 10 0 111111 11111111000 012355689999997 4456778888877666777777666
Q ss_pred Cc-chhhhhcCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHH
Q 041923 342 RD-QKVLKNGGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLA 391 (529)
Q Consensus 342 R~-~~~~~~~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLa 391 (529)
.+ ..+.... ......+++.+++.. .... .-..+.+..|++.++|.+.-
T Consensus 154 te~~Kl~~tI-~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 154 TEVKKIPVTI-ISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CChHHHHHHH-HHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 44 3332221 111156777777761 1111 12245567788888888753
No 50
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=2.2e-05 Score=80.92 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=93.7
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...+||-+..+..|..++.. ...+.++|++|+||||+|+.+++.+........-.++. . .. ...+..
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~--C----~s----C~~i~~ 86 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNE--C----TS----CLEITK 86 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCC--C----cH----HHHHHc
Confidence 56799999999999999883 23579999999999999999999764321100000000 0 00 000000
Q ss_pred HHhcC--------CCCCCCHHHHHHH-----hCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 EVLRD--------ENVIPDIEFNFTR-----LSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~~~~~--------~~~~~~~~~l~~~-----l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
....+ ...+..+..+.+. ..++.-++|+|+++ +.+..+.|+..+........+|++|.+ ..+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 00000 0001112222221 23466799999997 556788888877654455665555544 33322
Q ss_pred hcCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChH
Q 041923 349 NGGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PL 390 (529)
.. ......|.+.+++.. .... .-..+....|++.++|.+.
T Consensus 167 TI-~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 167 TI-LSRCQDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HH-HhhhheeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHH
Confidence 21 111156788887751 0001 1124555677777777774
No 51
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=5.1e-05 Score=81.48 Aligned_cols=172 Identities=18% Similarity=0.158 Sum_probs=94.9
Q ss_pred CCcccccchhHHhHHHHhccCC---EEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAAP---LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~---~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...+||-+..++.|.+.+...+ .+.++|..|+||||+|+.+++.+-...... .. +.+....++.+..
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~---------~~-pCg~C~~C~~i~~ 84 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT---------AT-PCGECDNCREIEQ 84 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC---------CC-CCCCCHHHHHHHc
Confidence 5679999999999999998433 378999999999999999998754321000 00 0011111111110
Q ss_pred HH-------hcC-CCCCCCHHHHHHH-----hCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 EV-------LRD-ENVIPDIEFNFTR-----LSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~~-------~~~-~~~~~~~~~l~~~-----l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
.- ... ...+..+..+.+. ..++.-++|||+++ +....+.|+..+....+.+++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 00 000 0001111122221 23566799999997 556788888887766666666665555 33332
Q ss_pred hcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChH
Q 041923 349 NGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PL 390 (529)
... .....+.+.+++..... ......+....|++.++|.+.
T Consensus 165 TI~-SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 165 TIL-SRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMR 215 (647)
T ss_pred HHH-hhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 211 11267888888761100 001123444566667777665
No 52
>PRK08727 hypothetical protein; Validated
Probab=98.33 E-value=1.6e-05 Score=75.59 Aligned_cols=56 Identities=20% Similarity=0.301 Sum_probs=38.4
Q ss_pred CCcccccchh-HHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 208 KNHLVGVESK-VGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~-l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.++|++.... +..+..... ....+.|+|.+|+|||+|+..+++.........+|+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4567766543 333333332 3457999999999999999999998776654455553
No 53
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=4.3e-05 Score=80.17 Aligned_cols=170 Identities=19% Similarity=0.154 Sum_probs=94.3
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCc-------ceEEEEecccccCCCCcHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFE-------GSCFLQNVRKESQSPGGLAR 277 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-------~~~~~~~~~~~~~~~~~~~~ 277 (529)
...++|-+..++.|...+.. ...+.++|++|+||||+|+.+++.+..... ..|..+ .
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C-------------~ 86 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC-------------T 86 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC-------------h
Confidence 46789999999999988772 357899999999999999999997643211 001100 0
Q ss_pred HHHHHHHH-------HhcCC-CCCCCHHHHHHH-----hCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEe-
Q 041923 278 LQQKLLSE-------VLRDE-NVIPDIEFNFTR-----LSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITT- 341 (529)
Q Consensus 278 l~~~ll~~-------~~~~~-~~~~~~~~l~~~-----l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTt- 341 (529)
-...+... +.... ..+..+..+.+. +.+++-++|+|+++. ...++.|+..+....+.+.+|++|
T Consensus 87 ~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred HHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00000000 00000 000111111111 234567899999974 456777877776555666665544
Q ss_pred CcchhhhhcCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHH
Q 041923 342 RDQKVLKNGGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 342 R~~~~~~~~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal 392 (529)
+...+..... .....+++.+++.. .... .-..+.+..|++.++|.+.-+
T Consensus 167 e~~kI~~tI~-SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 167 EVQKIPATII-SRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred ChHHhhHHHH-hcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 4444433221 11156778887761 0111 112355667888888877443
No 54
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.8e-05 Score=83.41 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc---------------------CcceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN---------------------FEGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~ 263 (529)
...+||-+..++.|.+++. -...+.++|++|+||||+|+.+++.+-.. |+..+.+.
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 5679999999999999997 24457899999999999999999976321 11111111
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
.. + ..+...+ +.++..+.- .-..++.-++|+|+++ +....+.|+..+....+.+++|++|
T Consensus 95 aa---s--~~~v~~i-R~l~~~~~~------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 95 AA---S--RTKVEDT-RELLDNIPY------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cc---c--cCCHHHH-HHHHHHHhh------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 00 0 1112221 122211110 0012455688999997 4566777887776666677777666
Q ss_pred Ccc-hhhhhcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHH
Q 041923 342 RDQ-KVLKNGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 342 R~~-~~~~~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal 392 (529)
.+. .+.... ......+++.+++... ... .-..+....|++.++|.+.-+
T Consensus 157 td~~kl~~tI-~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 157 TDHHKLPVTV-LSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred CChHhchHHH-HHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHH
Confidence 543 222111 1111456677666510 000 112344566777777777543
No 55
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.30 E-value=8.4e-06 Score=77.30 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=36.1
Q ss_pred Cccc-ccchh-HHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 209 NHLV-GVESK-VGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 209 ~~fv-GR~~~-l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
++|+ |...+ +..+.++.. ..+.+.|+|.+|+|||+||..+++.....-...+++
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i 76 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYL 76 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4555 55443 344444433 567899999999999999999999764433333444
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=5.2e-05 Score=82.98 Aligned_cols=131 Identities=22% Similarity=0.330 Sum_probs=75.1
Q ss_pred CCcccccchhHH---hHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVG---EIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~---~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
-+.|+|.+..+. .|.+.+. ....+.|+|++|+||||||+.+++.....|. .+. . . ..+...+ +..
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln-a--~---~~~i~di-r~~ 96 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN-A--V---LAGVKDL-RAE 96 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh-h--h---hhhhHHH-HHH
Confidence 467999998885 4666665 5667899999999999999999987654441 111 1 0 1111111 111
Q ss_pred HHHHhcCCCCCCCHHHHHHHh--CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEE--eCcch--hhhhcCCCc
Q 041923 283 LSEVLRDENVIPDIEFNFTRL--SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIIT--TRDQK--VLKNGGVKE 354 (529)
Q Consensus 283 l~~~~~~~~~~~~~~~l~~~l--~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliT--tR~~~--~~~~~~~~~ 354 (529)
+. ...+.+ .+++.+||||+++ +..+.+.|++.+. .+..++|+ |.+.. +.... ...
T Consensus 97 i~-------------~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL-~SR 159 (725)
T PRK13341 97 VD-------------RAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKAL-VSR 159 (725)
T ss_pred HH-------------HHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHh-hcc
Confidence 11 111111 2457799999997 4555666776543 45555553 34431 11111 111
Q ss_pred cceEeccCCCc
Q 041923 355 KDIYEMKALEC 365 (529)
Q Consensus 355 ~~~~~l~~L~~ 365 (529)
...+.+++++.
T Consensus 160 ~~v~~l~pLs~ 170 (725)
T PRK13341 160 SRLFRLKSLSD 170 (725)
T ss_pred ccceecCCCCH
Confidence 25678888876
No 57
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=9.1e-05 Score=79.34 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=81.9
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
.+.+||-+..++.|.+++. -...+.++|..|+||||+|+.+++.+-..-... .......+.+.....+.+..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~-----~~~~~~~pCg~C~~C~~i~~ 89 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDG-----QGGITATPCGVCQACRDIDS 89 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCccc-----ccCCCCCCCCccHHHHHHHc
Confidence 5679999999999999987 235578999999999999999998753210000 00000001111111111110
Q ss_pred HHhc-----CC---CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 EVLR-----DE---NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~~~~-----~~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
.... +. ..++.+..+.+.. .++.-++|||+++ +....+.|+..+......+++|++|.+ ..+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 0000 00 0001111222221 2344588999997 556678888877655566667666544 33322
Q ss_pred hcCCCccceEeccCCCc
Q 041923 349 NGGVKEKDIYEMKALEC 365 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~ 365 (529)
.. ......+++.+++.
T Consensus 170 TI-lSRc~~~~f~~Ls~ 185 (618)
T PRK14951 170 TV-LSRCLQFNLRPMAP 185 (618)
T ss_pred HH-HHhceeeecCCCCH
Confidence 21 11116778887775
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.28 E-value=7.4e-06 Score=83.45 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=40.7
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+.|++.++++|.+.+. ..+.+.|+|++|+|||+||+.++++....
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~ 183 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 183 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 4578999999999998764 25679999999999999999999987554
No 59
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.3e-05 Score=81.56 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=93.9
Q ss_pred CCcccccchhHHhHHHHhcc------------CCEEEEEecCcchHHHHHHHHHHHHhccC-------------------
Q 041923 208 KNHLVGVESKVGEIESLLAA------------APLVGIWGMGGIGKTTIARAVFNKISRNF------------------- 256 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~------------~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------------------- 256 (529)
-+.++|-+..++.|.+.+.. ...+.++|++|+|||++|..+++.+-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35688999999999998872 24588999999999999999998653321
Q ss_pred -cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhcc
Q 041923 257 -EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSL 328 (529)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~ 328 (529)
+...++. ... . ...... +..+.+.+ .+++-++|+|+++ +....+.|+..+
T Consensus 84 hpD~~~i~-~~~--~-~i~i~~------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPDVRVVA-PEG--L-SIGVDE------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCCEEEec-ccc--c-cCCHHH------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 1111111 000 0 011111 22222222 2345588889997 445556677776
Q ss_pred CCCCCCcEEEEEeCcc-hhhhhcCCCccceEeccCCCcCCCC----Cc-ccHHHHHHHHHHHhCCChHHH
Q 041923 329 DWFMPESRIIITTRDQ-KVLKNGGVKEKDIYEMKALECENLP----NE-VGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 329 ~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~l~~L~~~~~~----~~-~~~~~~~~~i~~~~~G~PLal 392 (529)
....+++.+|++|.+. .+.+... .....+.+.+++..... .. ....+.+..++..++|.|...
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIr-SRc~~i~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIR-SRCRHVALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIGRA 210 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHH-hhCeEEECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHH
Confidence 6556677777776663 3332221 11256777777651100 00 011344667888888988644
No 60
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2.9e-05 Score=78.02 Aligned_cols=179 Identities=16% Similarity=0.200 Sum_probs=102.7
Q ss_pred CCcccccchhHHhHHHHhccC---CEEEEEecCcchHHHHHHHHHHHHhcc----CcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAAA---PLVGIWGMGGIGKTTIARAVFNKISRN----FEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~---~~v~I~G~gGiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
...++|-+...+.|...+... ..+.|+|..|+||||||..+++.+-.. +..... .. +.+-....+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~----~~----~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETL----AD----PDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcccc----CC----CCCCCHHHH
Confidence 578999999999999999833 369999999999999999999976442 111100 00 000111222
Q ss_pred HHHHH-------Hhc---CCC-------CCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcE
Q 041923 281 KLLSE-------VLR---DEN-------VIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESR 336 (529)
Q Consensus 281 ~ll~~-------~~~---~~~-------~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~ 336 (529)
.+... +.. ... .++.+..+.+.+. ++.-++|+|+++ +....+.|+..+.....++.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 22111 000 000 0111333444433 356789999997 45566777777765555666
Q ss_pred EEEEeCc-chhhhhcCCCccceEeccCCCcCC-------C-CCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 337 IIITTRD-QKVLKNGGVKEKDIYEMKALECEN-------L-PNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 337 IliTtR~-~~~~~~~~~~~~~~~~l~~L~~~~-------~-~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
+|++|.+ ..+..... .....+.+.+++... . ....-..+.+..+++.++|.|.....+
T Consensus 174 fiLit~~~~~llptIr-SRc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 174 FILISHSSGRLLPTIR-SRCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEEECChhhccHHHH-hhccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555544 33332221 122688888888711 1 110111445678899999999855443
No 61
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.5e-05 Score=86.10 Aligned_cols=178 Identities=20% Similarity=0.201 Sum_probs=96.3
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...+||-+..++.|..++.. ...+.++|..|+||||+|+.+++.+.......- .. ..+.....+.+..
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~-~c~~c~~c~~i~~ 85 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GR-PCGTCEMCRAIAE 85 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CC-CCccCHHHHHHhc
Confidence 46799999999999998872 345689999999999999999987642111000 00 0111112222211
Q ss_pred HHhcC-----C---CCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 EVLRD-----E---NVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~~~~~-----~---~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
....+ . .....+..+.+.+. .++-++|+|+++ +.+..+.|+..+......+.+|+++.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 11000 0 00011222222222 345689999997 445677777776655566666666644 23322
Q ss_pred hcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHHHHH
Q 041923 349 NGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLALEILG 396 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~~~a 396 (529)
.. ......+++.+++... ... .-..+.+..|++.++|.+..+....
T Consensus 166 tI-~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 166 TI-LSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HH-HhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 1111456666665410 010 1123556778888888886554443
No 62
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=6.9e-05 Score=76.56 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=40.4
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-..++|.+...+.+.+.+. -.+.+.++|++|+|||++|..+++.+..
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4678999999999999987 2457889999999999999999987643
No 63
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=5.3e-05 Score=77.99 Aligned_cols=181 Identities=19% Similarity=0.225 Sum_probs=94.9
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhcc--CcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRN--FEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
...++|.+...+.|.+++.. ...+.++|++|+||||+|..+++.+... +...-|.....+ +.+...-.+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~----~c~~c~~c~~~ 90 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE----PCGECESCRDF 90 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC----CCCCCHHHHHH
Confidence 46799999999999998883 3348899999999999999999976432 100000000000 00000111111
Q ss_pred HHHHhc-----CC---CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chh
Q 041923 283 LSEVLR-----DE---NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKV 346 (529)
Q Consensus 283 l~~~~~-----~~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~ 346 (529)
...... +. ..++.+..+.+.+ .+.+-++|+|+++ +.+.++.|+..+....+.+.+|++|.+ ..+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 100000 00 0011122233333 2345688999997 345677777777655566666665533 333
Q ss_pred hhhcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChHHHH
Q 041923 347 LKNGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPLALE 393 (529)
Q Consensus 347 ~~~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PLal~ 393 (529)
..... .....+++.+++..... ...-..+.+..|++.++|.+.-+.
T Consensus 171 ~~tl~-sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 171 PATIA-SRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHH-HHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 22210 01145667777651100 001234667778888888775433
No 64
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.25 E-value=5.4e-05 Score=76.97 Aligned_cols=168 Identities=18% Similarity=0.147 Sum_probs=92.0
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc----C-----------------cceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN----F-----------------EGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~----f-----------------~~~~~~~ 263 (529)
-..++|.+..++.|.+.+. -...+.++|++|+|||++|+.+++.+... + ...+.+.
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~ 92 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEID 92 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEee
Confidence 4678999999999999887 23467899999999999999999876422 1 0111111
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~l~~l~~~~~~~~~gs~IliTt 341 (529)
. .. ..... -.+.+...+... -..+++-++|+|+++.. ...+.++..+....+.+.+|++|
T Consensus 93 ~-~~----~~~~~-~~~~l~~~~~~~------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~ 154 (355)
T TIGR02397 93 A-AS----NNGVD-DIREILDNVKYA------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILAT 154 (355)
T ss_pred c-cc----cCCHH-HHHHHHHHHhcC------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEe
Confidence 0 00 00111 111222111100 01234558899999643 55667777766555667777776
Q ss_pred Ccch-hhhhcCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 342 RDQK-VLKNGGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 342 R~~~-~~~~~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
.+.. +..... .....+++.+++.. .... .-..+.+..+++.++|.|..+...
T Consensus 155 ~~~~~l~~~l~-sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 155 TEPHKIPATIL-SRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCHHHHHHHHH-hheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 5543 222211 11145666666541 0010 112345566667777766554433
No 65
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.25 E-value=1.7e-05 Score=72.87 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=80.4
Q ss_pred hHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc---------------------CcceEEEEecccccCCCCcH
Q 041923 220 EIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN---------------------FEGSCFLQNVRKESQSPGGL 275 (529)
Q Consensus 220 ~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~~ 275 (529)
.|.+.+. -...+.++|+.|+|||++|..+++.+... ++...++.... . ....
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~-~~~~ 78 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q-SIKV 78 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C-cCCH
Confidence 3444444 24578899999999999999999986432 11112221000 0 0111
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcc-hhhhhcCC
Q 041923 276 ARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQ-KVLKNGGV 352 (529)
Q Consensus 276 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~ 352 (529)
.. .+.+...+... -..+.+-++|+||++. .+..+.|+..+....+.+.+|++|++. .+.... .
T Consensus 79 ~~-i~~i~~~~~~~------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i-~ 144 (188)
T TIGR00678 79 DQ-VRELVEFLSRT------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI-R 144 (188)
T ss_pred HH-HHHHHHHHccC------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH-H
Confidence 11 11111111100 0124566899999974 445677777776656677777777654 222211 1
Q ss_pred CccceEeccCCCcCCCCC----cccHHHHHHHHHHHhCCChH
Q 041923 353 KEKDIYEMKALECENLPN----EVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 353 ~~~~~~~l~~L~~~~~~~----~~~~~~~~~~i~~~~~G~PL 390 (529)
.....+++.+++...... ..-..+.+..+++.++|.|.
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQGISEEAAELLLALAGGSPG 186 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 112577787777510000 00113456667777777664
No 66
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=5.9e-05 Score=79.87 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=40.5
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|++..++.|.+.+. -.+.+.++|+.|+||||+|+.+++.+.
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4679999999999999986 356788999999999999999999764
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.20 E-value=7.3e-05 Score=71.15 Aligned_cols=54 Identities=13% Similarity=0.332 Sum_probs=36.1
Q ss_pred Cccc-ccch-hHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 209 NHLV-GVES-KVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 209 ~~fv-GR~~-~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
++|+ |-.. .+..+.++.. ..+.+.|+|++|+|||+|+..+++........+.|+
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455 6322 3444444433 557899999999999999999999876543334444
No 68
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=6.4e-05 Score=83.38 Aligned_cols=169 Identities=15% Similarity=0.111 Sum_probs=93.4
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCc--c-eEEEEecccccCCCCcHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFE--G-SCFLQNVRKESQSPGGLARLQQK 281 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~~l~~~ 281 (529)
...+||.+..++.|.+.+. -...+.++|..|+||||+|+.+++.+..... . .|-.| .-++.
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C-------------~sC~~ 80 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC-------------DSCVA 80 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc-------------HHHHH
Confidence 4679999999999999997 2456789999999999999999997642110 0 00000 00000
Q ss_pred HHHH---------Hhc-CCCCCCCHHHHHHH-----hCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-
Q 041923 282 LLSE---------VLR-DENVIPDIEFNFTR-----LSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD- 343 (529)
Q Consensus 282 ll~~---------~~~-~~~~~~~~~~l~~~-----l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~- 343 (529)
+... +.. ....++.+..+.+. ..++.-++|||+++ +....+.|+..+......+.+|++|.+
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 0000 000 00001111222221 23455688999997 456677788887766677776666644
Q ss_pred chhhhhcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChH
Q 041923 344 QKVLKNGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 344 ~~~~~~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PL 390 (529)
..+..... .....|++.+++...+. ......+....|++.++|.+.
T Consensus 161 ~kLl~TIr-SRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 161 DKVIGTIR-SRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred hhhhHHHH-hheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 33433221 11167778777651100 001123344567777777774
No 69
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=0.00014 Score=78.22 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=94.0
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhcc--CcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRN--FEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
...+||-+..++.|.+.+.. ...+.++|+.|+||||+|+.+++.+... .....|.....+ +.+.....+.+
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~----~Cg~C~sC~~~ 90 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE----PCGECESCRDF 90 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC----CCccCHHHHHH
Confidence 56799999999999998872 3458899999999999999999976331 110011110000 00111111111
Q ss_pred HHHHhc-----CC---CCCCCHHHHHHHh-----CCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeC-cchh
Q 041923 283 LSEVLR-----DE---NVIPDIEFNFTRL-----SRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTR-DQKV 346 (529)
Q Consensus 283 l~~~~~-----~~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR-~~~~ 346 (529)
...... +. ..++.+..+.+.+ .+.+-++|+|+++. ....+.|+..+....+.+.+|++|. ...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 100000 00 0011122222222 23455789999974 3457777777765555666555553 3333
Q ss_pred hhhcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChH
Q 041923 347 LKNGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 347 ~~~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PL 390 (529)
.... ......+++.+++..... ...-..+.+..|++.++|..-
T Consensus 171 l~TI-~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATI-ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHH-HhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 3221 111167888887651100 001224556777788888654
No 70
>PRK05642 DNA replication initiation factor; Validated
Probab=98.17 E-value=6e-05 Score=71.65 Aligned_cols=36 Identities=22% Similarity=0.559 Sum_probs=28.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.+.+.|+|.+|+|||.|+..+++.+..+-..++|+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 367899999999999999999988765544445543
No 71
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=0.0001 Score=79.02 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=98.8
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcc---eEEEEecccccCCCCcHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEG---SCFLQNVRKESQSPGGLARLQQK 281 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~~~ 281 (529)
...++|.+..++.|.+.+. -...+.++|+.|+||||+|+.+++.+...... ..-+. ..+...-.+.
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~--------~cg~c~~C~~ 94 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID--------LCGVGEHCQA 94 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc--------cCcccHHHHH
Confidence 4679999999999999997 24578999999999999999999976433210 00000 0011111111
Q ss_pred HHHHHhc-------C-CCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeC-cch
Q 041923 282 LLSEVLR-------D-ENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTR-DQK 345 (529)
Q Consensus 282 ll~~~~~-------~-~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR-~~~ 345 (529)
+...... . ...+..+..+.+.+. .++-++|+|+++ +....+.|+..+....+.+.+|++|. ...
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 0 001111222322222 345578999997 44567777777766566777766553 333
Q ss_pred hhhhcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 346 VLKNGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 346 ~~~~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
+.... ......+++.+++... ... .-..+.+..|++.++|.+.-+...
T Consensus 175 ll~tI-~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTV-LSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHH-HhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 33221 1111567777776611 111 122356677888888887655433
No 72
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.00019 Score=76.36 Aligned_cols=46 Identities=30% Similarity=0.378 Sum_probs=39.5
Q ss_pred CCcccccchhHHhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|-+..++.|.+++. . ...+.++|++|+||||+|+.+++.+.
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4679999999999999987 2 34568999999999999999998763
No 73
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.14 E-value=2.9e-06 Score=72.77 Aligned_cols=88 Identities=22% Similarity=0.325 Sum_probs=45.8
Q ss_pred ccEEeccCccccccchHHHHHHHHhhC-------CCcE-Ee---------eC-CCCCCCCCCcchHHHHhhcceEEEEec
Q 041923 26 YDVFLSFSRAETRDSFTSHLRSALCQK-------SIET-FI---------DD-QLIRGDDISESLPDTIAASSISIIIFS 87 (529)
Q Consensus 26 ~dvFis~~~~d~~~~~~~~l~~~L~~~-------g~~~-~~---------d~-~~~~g~~~~~~i~~~i~~s~~~i~v~S 87 (529)
|.|||||++.|.. .....|...+... .+.. |. +. +....+.+...|.++|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999944 2677777777663 2211 11 11 222334677889999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCeeEeEE
Q 041923 88 ERYASSGRCLNELLKILECKHNYGQIVIPVF 118 (529)
Q Consensus 88 ~~y~~s~~c~~El~~~~~~~~~~~~~v~pvf 118 (529)
++-..|.|+.+|+..+++.. ..|+-|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~----~~Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKG----KPIIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT-------EEEEE
T ss_pred CCcccCcHHHHHHHHHHHCC----CCEEEEE
Confidence 99999999999999887733 3455554
No 74
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.13 E-value=5.6e-05 Score=77.50 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=39.9
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.+.+.|++.++++|.+.+. .++.|.|+|++|+|||+||+.++++...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 3568899999999998763 3567999999999999999999987653
No 75
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=0.00015 Score=77.26 Aligned_cols=170 Identities=18% Similarity=0.203 Sum_probs=93.0
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccC---------------------cceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNF---------------------EGSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~~~~~ 263 (529)
...++|-+...+.|.+.+.. ...+.++|+.|+||||+|+.+++.+.... ...+++.
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId 94 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEID 94 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEe
Confidence 46789999988889988872 46788999999999999999998764211 0011111
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
. .+ ...+..+ +.+...+. ..-..+++-++|||+++. .+..+.|+..+........+|++|
T Consensus 95 -~--a~--~~~Id~i-R~L~~~~~------------~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 95 -G--AS--NRGIDDA-KRLKEAIG------------YAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred -c--cc--ccCHHHH-HHHHHHHH------------hhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 0 00 0111111 11111110 001234567899999973 456677777765444566666655
Q ss_pred Cc-chhhhhcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCCh-HHHHHHH
Q 041923 342 RD-QKVLKNGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVP-LALEILG 396 (529)
Q Consensus 342 R~-~~~~~~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~P-Lal~~~a 396 (529)
.+ ..+.... ......+++.+++..... ...-..+.++.|++.++|.+ .|+..+.
T Consensus 157 t~~~kll~TI-~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLe 222 (624)
T PRK14959 157 TEPHKFPVTI-VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLG 222 (624)
T ss_pred CChhhhhHHH-HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 54 3333221 111145677777651110 00112345566666777754 4555443
No 76
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.12 E-value=3.4e-05 Score=66.05 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.2
Q ss_pred EEEEecCcchHHHHHHHHHHHHh
Q 041923 231 VGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
|.|+|++|+|||++|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999874
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.0002 Score=76.39 Aligned_cols=171 Identities=19% Similarity=0.164 Sum_probs=94.1
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...+||.+..++.|.+++.. ...+.++|+.|+||||+|+.+++.+........ . +.+...-.+.+..
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~--~--------pCg~C~~C~~i~~ 81 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA--T--------PCGVCESCVALAP 81 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC--C--------cccccHHHHHhhc
Confidence 46799999999999999982 335789999999999999999987642210000 0 0000000111100
Q ss_pred H---------HhcCC-CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chh
Q 041923 285 E---------VLRDE-NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKV 346 (529)
Q Consensus 285 ~---------~~~~~-~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~ 346 (529)
. +.... ..++.+..+.+.+ .+++-++|+|+++ +....+.|+..+......+.+|++|.+ ..+
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl 161 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV 161 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence 0 00000 0111122222221 2355688999997 556777888887766667766665543 333
Q ss_pred hhhcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChH
Q 041923 347 LKNGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 347 ~~~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PL 390 (529)
..... .....+++.+++... ... .-..+.+..|++.++|.+.
T Consensus 162 l~TI~-SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 162 LPTIR-SRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred HHHHH-HhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 32211 111678888876510 011 1123455667778888774
No 78
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.11 E-value=2e-05 Score=87.43 Aligned_cols=47 Identities=26% Similarity=0.338 Sum_probs=41.6
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-+.++||+.++.++.+.|. ...-+.++|.+|+|||++|+.+++++..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999887 5667889999999999999999998744
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=0.00024 Score=74.73 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=96.4
Q ss_pred CCcccccchhHHhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHhcc-C-------------------cceEEEEe
Q 041923 208 KNHLVGVESKVGEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKISRN-F-------------------EGSCFLQN 264 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f-------------------~~~~~~~~ 264 (529)
-..++|-+...+.|...+. . .....++|..|+||||+|+.+++.+-.. . ...++..+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eld 92 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMD 92 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEec
Confidence 4679999999999999987 2 3456899999999999999999876321 1 11111111
Q ss_pred cccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeC
Q 041923 265 VRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 265 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR 342 (529)
..+ ..+...+.. +...... .-..+++-++|+|+++ +.+..+.|+..+....+.+++|++|.
T Consensus 93 --aas--~~gId~IRe-lie~~~~------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 93 --AAS--NRGIDDIRE-LIEQTKY------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred --ccc--ccCHHHHHH-HHHHHhh------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 000 111222211 1111000 0011345688999997 45667778877766666777777776
Q ss_pred cch-hhhhcCCCccceEeccCCCcC-----------CCCCcccHHHHHHHHHHHhCCChHHHHH
Q 041923 343 DQK-VLKNGGVKEKDIYEMKALECE-----------NLPNEVGYQELSEKIINYAQGVPLALEI 394 (529)
Q Consensus 343 ~~~-~~~~~~~~~~~~~~l~~L~~~-----------~~~~~~~~~~~~~~i~~~~~G~PLal~~ 394 (529)
+.. +.... ......+++.+++.. .... .-..+.+..|++.++|.+.-+..
T Consensus 156 d~~kL~~tI-~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 156 DPLKLPATI-LSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred ChhhCchHH-HhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHH
Confidence 532 21111 111267888888761 1111 11245667788888888754433
No 80
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.06 E-value=0.00011 Score=69.14 Aligned_cols=100 Identities=18% Similarity=0.312 Sum_probs=58.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcc-eEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEG-SCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
...+.|+|..|+|||.|...+++.+...++. .+.+.. ...+...+...+.. .....+++.+++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~-----~~~~~~~~~~~~- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD-----GEIEEFKDRLRS- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT-----TSHHHHHHHHCT-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc-----ccchhhhhhhhc-
Confidence 3568999999999999999999988765443 333321 23333333333322 224455566663
Q ss_pred cEEEEEcCCCC---HHHH-HHHHhccCCC-CCCcEEEEEeCc
Q 041923 307 KALIVLDDVTC---FRQI-KFLIRSLDWF-MPESRIIITTRD 343 (529)
Q Consensus 307 ~~LLVlDdv~~---~~~l-~~l~~~~~~~-~~gs~IliTtR~ 343 (529)
-=+|+|||++. ...+ +.+...+... ..|.++|+|++.
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 34778899963 2212 2222222111 257789999965
No 81
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00028 Score=76.43 Aligned_cols=169 Identities=13% Similarity=0.182 Sum_probs=91.7
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
-..++|.+..++.|.+.+. -...+.++|+.|+|||++|+.+++.+-..-....+ ....-+.....
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~------------~pC~~C~~~~~ 84 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLL------------EPCQECIENVN 84 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCC------------CchhHHHHhhc
Confidence 4679999999999999997 35567899999999999999999875321110000 00000000000
Q ss_pred H---Hh-cCC---CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEe-Ccchhhhh
Q 041923 285 E---VL-RDE---NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITT-RDQKVLKN 349 (529)
Q Consensus 285 ~---~~-~~~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTt-R~~~~~~~ 349 (529)
. .. ... .....+..+.+.+ .+++-++|+|+++ .......|+..+......+.+|++| ....+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 00 000 0001122222222 2456688999997 4456777887776555566655554 43333322
Q ss_pred cCCCccceEeccCCCcCCC-----------CCcccHHHHHHHHHHHhCCChH
Q 041923 350 GGVKEKDIYEMKALECENL-----------PNEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 350 ~~~~~~~~~~l~~L~~~~~-----------~~~~~~~~~~~~i~~~~~G~PL 390 (529)
. ......+++.+++.... .. ....+.+..+++.++|.+.
T Consensus 165 I-~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 165 I-LSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred H-HhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 1 11115788888766110 11 1123446667777777664
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00035 Score=73.37 Aligned_cols=177 Identities=16% Similarity=0.095 Sum_probs=92.5
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc---C--cceEEEEecccccC-CCCcHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN---F--EGSCFLQNVRKESQ-SPGGLARL 278 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---f--~~~~~~~~~~~~~~-~~~~~~~l 278 (529)
...++|-+...+.|.+++. -.....++|+.|+||||+|+.++..+... . ++... .++..... ...++..
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~~e- 92 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDLIE- 92 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcEEE-
Confidence 4678999999999999997 23456789999999999999999876421 0 00000 00000000 0000000
Q ss_pred HHHHHHHHhcCC-CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhhh
Q 041923 279 QQKLLSEVLRDE-NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLKN 349 (529)
Q Consensus 279 ~~~ll~~~~~~~-~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~~ 349 (529)
+.... .....+..+.+.. .+++-++|+|+++ +....+.|+..+....+.+.+|++|.+ ..+...
T Consensus 93 -------idaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~t 165 (486)
T PRK14953 93 -------IDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPT 165 (486)
T ss_pred -------EeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHH
Confidence 00000 0001122222222 2456699999997 345567777776655556666555533 333221
Q ss_pred cCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 350 GGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 350 ~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
.. .....+++.+++... ... ....+.+..|++.++|.+..+...
T Consensus 166 I~-SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 166 IL-SRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HH-HhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 111567777776511 011 122355667777888877644433
No 83
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=0.00021 Score=74.58 Aligned_cols=165 Identities=21% Similarity=0.263 Sum_probs=92.1
Q ss_pred CCcccccchhHHhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHhccCc----ceE----------------EEEe
Q 041923 208 KNHLVGVESKVGEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKISRNFE----GSC----------------FLQN 264 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~----~~~----------------~~~~ 264 (529)
-..++|.+..++.|.+.+. . ...+.++|++|+|||++|+.+++.+...-. ..| |+.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~- 94 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE- 94 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE-
Confidence 4679999999999999987 2 356789999999999999999987632200 000 000
Q ss_pred cccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeC
Q 041923 265 VRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 265 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR 342 (529)
+.+.. ..++..+. .+...+. .....+.+-++|+|+++ +.+..+.|+..+....+.+.+|++|.
T Consensus 95 i~g~~--~~gid~ir-~i~~~l~------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 95 IDGAS--HRGIEDIR-QINETVL------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred eeccc--cCCHHHHH-HHHHHHH------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 00000 01111111 1111100 00112456788999997 34456677777665556666776664
Q ss_pred c-chhhhhcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChH
Q 041923 343 D-QKVLKNGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 343 ~-~~~~~~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PL 390 (529)
+ ..+.... ......+++.+++... ... .-..+.++.|++.++|.+.
T Consensus 160 ~~~kl~~tI-~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 160 EIHKIPGTI-LSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLR 217 (451)
T ss_pred ChHhcchHH-HHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHH
Confidence 3 2222211 1111567777776611 111 1224566778888888664
No 84
>PRK09087 hypothetical protein; Validated
Probab=98.03 E-value=9.9e-05 Score=69.63 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+.+.|+|.+|+|||+|++.++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999888753
No 85
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.03 E-value=4.6e-05 Score=85.64 Aligned_cols=46 Identities=24% Similarity=0.408 Sum_probs=41.0
Q ss_pred CcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+||+.+++++.+.|. ....+.++|.+|+|||++|..+++++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~ 226 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVN 226 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 469999999999999998 5667789999999999999999998753
No 86
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00039 Score=75.18 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCc---------------------ceEEEE
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFE---------------------GSCFLQ 263 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~---------------------~~~~~~ 263 (529)
-+.++|.+...+.|.+.+. -...+.++|+.|+||||+|+.++..+..... ..+...
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~l 95 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHEL 95 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEe
Confidence 4679999999999999987 2456889999999999999999987632110 000000
Q ss_pred ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEe
Q 041923 264 NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
+.. . ......+ +.+...+... -..+++=++|+|+++ +.+..+.|+..+......+.+|++|
T Consensus 96 d~~---~-~~~vd~I-r~li~~~~~~------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 96 DAA---S-NNSVDDI-RNLIEQVRIP------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred ccc---c-cCCHHHH-HHHHHHHhhC------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 000 0 0111111 1111111000 011344588999997 4456777887776655666666555
Q ss_pred -CcchhhhhcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChH
Q 041923 342 -RDQKVLKNGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 342 -R~~~~~~~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PL 390 (529)
....+..... .....+++.+++..... .-....+.+..|++.++|...
T Consensus 159 t~~~kIl~tI~-SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 159 TEKHKILPTIL-SRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCchhchHHHH-hhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 4444433221 11156777777661110 001123455667777777654
No 87
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.02 E-value=9.5e-05 Score=82.90 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=42.0
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
-+.++||+.++.++...|. ....+.++|.+|+|||+||..+++++...
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 4679999999999999887 56678899999999999999999987543
No 88
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.02 E-value=0.00011 Score=73.37 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|.+...+.+..++. -..++.++|++|+|||++|..+++..... ...+ +... .....+...+ .
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i-~~~~-----~~~~~i~~~l-~ 89 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFV-NGSD-----CRIDFVRNRL-T 89 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEe-ccCc-----ccHHHHHHHH-H
Confidence 4679999999999999987 24567779999999999999999876322 1222 2211 1111111111 1
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH---HHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF---RQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~---~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
...... .+...+-+||+|+++.. +..+.+...+.....++.+|+||...
T Consensus 90 ~~~~~~-----------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 90 RFASTV-----------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred HHHHhh-----------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 111000 01234568899999743 22333433344445677888888653
No 89
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.99 E-value=4.5e-05 Score=85.73 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=41.6
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-+.++||+.++.++.+.|. ....+.++|.+|+|||+||..++.++..
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 4569999999999999987 5667889999999999999999998754
No 90
>PRK08181 transposase; Validated
Probab=97.98 E-value=5.6e-05 Score=72.92 Aligned_cols=106 Identities=24% Similarity=0.237 Sum_probs=60.5
Q ss_pred HHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHH
Q 041923 222 ESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFT 301 (529)
Q Consensus 222 ~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~ 301 (529)
.+|+.....+.|+|.+|+|||.||..+++....+...++|+. ...+...+..... ........+
T Consensus 100 ~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-----------~~~L~~~l~~a~~-----~~~~~~~l~ 163 (269)
T PRK08181 100 DSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-----------TTDLVQKLQVARR-----ELQLESAIA 163 (269)
T ss_pred HHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-----------HHHHHHHHHHHHh-----CCcHHHHHH
Confidence 345557778999999999999999999998766544445543 2334444432211 112223333
Q ss_pred HhCCCcEEEEEcCCC----CHHHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 302 RLSRRKALIVLDDVT----CFRQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 302 ~l~~~~~LLVlDdv~----~~~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
.+. +.=||||||+. +....+.+...+...-.+..+||||...
T Consensus 164 ~l~-~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 164 KLD-KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHh-cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 333 34499999994 2222223333222111224688888753
No 91
>PRK08116 hypothetical protein; Validated
Probab=97.98 E-value=4.4e-05 Score=73.98 Aligned_cols=102 Identities=21% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
...+.|+|.+|+|||.||..+++.+..+...++++. ...++..+....... .......+.+.+.+-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~--~~~~~~~~~~~l~~~d 180 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSS--GKEDENEIIRSLVNAD 180 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhcc--ccccHHHHHHHhcCCC
Confidence 356899999999999999999999876633344442 223344443332211 1112334555555555
Q ss_pred EEEEEcCCC--CH--HHHHHHHhccCC-CCCCcEEEEEeCc
Q 041923 308 ALIVLDDVT--CF--RQIKFLIRSLDW-FMPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~--~~--~~l~~l~~~~~~-~~~gs~IliTtR~ 343 (529)
||||||+. .. .....+...+.. ...+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999993 11 112223222211 1355678899874
No 92
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.0005 Score=73.49 Aligned_cols=174 Identities=17% Similarity=0.140 Sum_probs=92.3
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
-..++|-+..++.|...+. -...+.++|+.|+||||+|+.+++.+-..-..... +.+...-.+.+..
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~----------pC~~C~~C~~i~~ 84 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPM----------PCGECSSCKSIDN 84 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCC----------CCccchHHHHHHc
Confidence 4679999999999999997 34567899999999999999999976421000000 0000000000000
Q ss_pred H-------HhcCC-CCCCCHHHHHHH-----hCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 E-------VLRDE-NVIPDIEFNFTR-----LSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~-------~~~~~-~~~~~~~~l~~~-----l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
. +.+.. .....+..+.+. ..+++-++|+|+++ +....+.|+..+....+.+.+|++|.+ ..+..
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~ 164 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA 164 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence 0 00000 000111112111 13456689999997 445677888877765566777666654 22322
Q ss_pred hcCCCccceEeccCCCcCCCC----------CcccHHHHHHHHHHHhCCChHHH
Q 041923 349 NGGVKEKDIYEMKALECENLP----------NEVGYQELSEKIINYAQGVPLAL 392 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~~~i~~~~~G~PLal 392 (529)
.. ......+++.+++..... ...-..+.+..|++.++|.+..+
T Consensus 165 tI-~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 165 TI-KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HH-HHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 21 111145777777551100 00112345556677777766433
No 93
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.96 E-value=7.1e-05 Score=69.88 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=41.5
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.+.++|.+.+.+.|.+-.. ...-+.+||..|.|||+|++.+.+.+..+
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 4789999999998887543 67789999999999999999999987765
No 94
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00033 Score=75.66 Aligned_cols=176 Identities=20% Similarity=0.203 Sum_probs=92.9
Q ss_pred CCcccccchhHHhHHHHhcc---CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLAA---APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~---~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
-..++|.+...+.|..++.. ...+.++|..|+||||+|+.+++.+........-.. ..+.....+.+..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~--------~Cg~C~~C~~i~~ 86 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPE--------PCGKCELCRAIAA 86 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCC--------CCcccHHHHHHhc
Confidence 46799999999999999882 357789999999999999999997643211000000 1111112222211
Q ss_pred HHhc-----CC---CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hhhh
Q 041923 285 EVLR-----DE---NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KVLK 348 (529)
Q Consensus 285 ~~~~-----~~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~ 348 (529)
.... .. ..+..+..+.+.+ .+++-++|+|+++ +.+..+.|+..+......+.+|++|.+. .+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 1100 00 0011122222222 2345688999997 4456777877776554556555555443 3322
Q ss_pred hcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHHHH
Q 041923 349 NGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLALE 393 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLal~ 393 (529)
.. ......+++.+++... ... .-..+.+..|++.++|.+..+.
T Consensus 167 TI-rSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 167 TI-ISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HH-HhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 21 1111456666554410 000 1112445667777777665443
No 95
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.94 E-value=3e-05 Score=73.97 Aligned_cols=88 Identities=20% Similarity=0.206 Sum_probs=58.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc-cCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC----------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR-NFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD---------- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---------- 295 (529)
....++|.|.+|+|||||++.+++.+.. +|+..+|+....+. .....++++.+...+.......+.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er---~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER---PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC---CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 6788999999999999999999997654 57878787755442 346777777773333222221111
Q ss_pred HHHHHHH-hCCCcEEEEEcCCCC
Q 041923 296 IEFNFTR-LSRRKALIVLDDVTC 317 (529)
Q Consensus 296 ~~~l~~~-l~~~~~LLVlDdv~~ 317 (529)
....... -.+++++|++|++..
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHH
Confidence 1111211 247899999999953
No 96
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.00022 Score=71.71 Aligned_cols=111 Identities=16% Similarity=0.249 Sum_probs=72.2
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCcc-eEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEG-SCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
+...+||+.++..+.+++. ..+.+-|+|.+|.|||.+...++.+....... .....+..........+..+..
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHH
Confidence 5679999999999999987 67889999999999999999999987766554 2233333322221233334444
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCC--CcEEEEEcCCCCH
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSR--RKALIVLDDVTCF 318 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~--~~~LLVlDdv~~~ 318 (529)
.++...............+...... ..+|+|+|..|..
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 4433333333332234444444443 3689999998643
No 97
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.91 E-value=2.8e-05 Score=77.63 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=60.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc-cCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC----------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR-NFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD---------- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---------- 295 (529)
.....+|+|++|+|||||++.+++.+.. +|+..+|+..+++. +....++++.+...+.......+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER---~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc---hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 6788999999999999999999998765 58888888766553 346777777776332222111111
Q ss_pred HHHHHHH-hCCCcEEEEEcCCCC
Q 041923 296 IEFNFTR-LSRRKALIVLDDVTC 317 (529)
Q Consensus 296 ~~~l~~~-l~~~~~LLVlDdv~~ 317 (529)
.+..... -.++++||++|++..
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHH
Confidence 1111111 257899999999953
No 98
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00087 Score=66.46 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=99.7
Q ss_pred CcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhc---------------cCcceEEEEecccccC
Q 041923 209 NHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISR---------------NFEGSCFLQNVRKESQ 270 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~---------------~f~~~~~~~~~~~~~~ 270 (529)
..++|.+...+.|.+.+. -.....++|..|+||+++|..+++.+-. .++...|+........
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 468999999999999987 2578999999999999999999987532 1333344331100000
Q ss_pred CCCcHHHHHHHHHHHHh--cCC-C--CCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEE
Q 041923 271 SPGGLARLQQKLLSEVL--RDE-N--VIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRII 338 (529)
Q Consensus 271 ~~~~~~~l~~~ll~~~~--~~~-~--~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~Il 338 (529)
.... .......+ ... . .++.+..+.+.+. +.+-++|+|+++ +....+.|+..+.... .+.+|
T Consensus 84 --~~~~---~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 84 --KLIT---ASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred --cccc---hhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 0000 00000111 000 0 1112344444443 356688999997 4456777877776655 45555
Q ss_pred EEeCc-chhhhhcCCCccceEeccCCCcCCC-------CCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 339 ITTRD-QKVLKNGGVKEKDIYEMKALECENL-------PNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 339 iTtR~-~~~~~~~~~~~~~~~~l~~L~~~~~-------~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
++|.+ ..++.... .....+++.+++.... ...+........++..++|.|.....+
T Consensus 158 Li~~~~~~Ll~TI~-SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIV-SRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHH-hhceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHHH
Confidence 55544 34433321 1126788888876110 000111111357788899999765443
No 99
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.89 E-value=0.00019 Score=69.60 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=33.6
Q ss_pred cccccchhHHhHHHHhc-----------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 210 HLVGVESKVGEIESLLA-----------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~-----------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.++|.+...++|.+... ....+.++|++|+||||+|+.+++.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47888777666654432 245688999999999999999998764
No 100
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.89 E-value=8e-05 Score=83.99 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=41.9
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
-+.++||+.++.++...|. ....+.++|.+|+|||+||..+++++...
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~ 221 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNG 221 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcc
Confidence 4569999999999999987 55677899999999999999999987543
No 101
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.88 E-value=0.00034 Score=71.59 Aligned_cols=47 Identities=26% Similarity=0.360 Sum_probs=39.3
Q ss_pred CCcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-..+.|.+...++|.+.+. .++.+.|+|++|+|||+||+.+++....
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~ 205 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA 205 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3568899999988888653 4678999999999999999999987643
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00015 Score=75.54 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=79.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..+.|+|..|+|||+|+..+++.+....+ ..+.+.. ...+...+...+.... .....+.+.+++ .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~---~~~~~~~~~~~~-~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH---KEIEQFKNEICQ-N 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh---hHHHHHHHHhcc-C
Confidence 56899999999999999999997754332 2222221 2233344433332210 113334444443 4
Q ss_pred EEEEEcCCCC----HHHHHHHHhccCCC-CCCcEEEEEeCcch-hh--------hhcCCCccceEeccCCCc--------
Q 041923 308 ALIVLDDVTC----FRQIKFLIRSLDWF-MPESRIIITTRDQK-VL--------KNGGVKEKDIYEMKALEC-------- 365 (529)
Q Consensus 308 ~LLVlDdv~~----~~~l~~l~~~~~~~-~~gs~IliTtR~~~-~~--------~~~~~~~~~~~~l~~L~~-------- 365 (529)
-+|||||+.. ....+.|...+... ..|..||+|+.... .. ...... -..++.+++.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHHHHH
Confidence 4788999952 22223333322211 24557888876432 11 111111 4556666665
Q ss_pred -----CCCCCcccHHHHHHHHHHHhCCChHHHHHHHH
Q 041923 366 -----ENLPNEVGYQELSEKIINYAQGVPLALEILGC 397 (529)
Q Consensus 366 -----~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 397 (529)
..... .-.++.+.-|++.++|.|..+..+..
T Consensus 286 ~~~~~~gl~~-~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNIKQ-EVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCCCC-CCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 11100 12245566677777777766655543
No 103
>PRK10536 hypothetical protein; Provisional
Probab=97.87 E-value=0.00016 Score=68.28 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=77.0
Q ss_pred CcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHH-H-hccCcceEEEEecccccC----CCCcHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNK-I-SRNFEGSCFLQNVRKESQ----SPGGLARLQQKL 282 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~----~~~~~~~l~~~l 282 (529)
..+.+|......+..++....+|.+.|.+|.|||+||..++.+ + ...|...+.....-.... .+.+..+-..-.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 4577888888888888887779999999999999999999885 3 344554443321111100 122332222222
Q ss_pred HHHHhcCCC---CCCCHHHH------------HHHhCCC---cEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeC
Q 041923 283 LSEVLRDEN---VIPDIEFN------------FTRLSRR---KALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 283 l~~~~~~~~---~~~~~~~l------------~~~l~~~---~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR 342 (529)
+..+..... .......+ ...++++ .-+||+|.+. +..+...++..+ +.+|++|+|--
T Consensus 135 ~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD 211 (262)
T PRK10536 135 FRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGD 211 (262)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCC
Confidence 211111000 00001111 1244454 3599999996 456677766554 68999999865
Q ss_pred c
Q 041923 343 D 343 (529)
Q Consensus 343 ~ 343 (529)
.
T Consensus 212 ~ 212 (262)
T PRK10536 212 I 212 (262)
T ss_pred h
Confidence 3
No 104
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.87 E-value=0.00013 Score=76.24 Aligned_cols=47 Identities=30% Similarity=0.474 Sum_probs=39.8
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..+.|.+.++++|.+.+. ..+-+.|+|++|+|||++|+.+++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 557889999999888753 45679999999999999999999987654
No 105
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00056 Score=73.31 Aligned_cols=172 Identities=16% Similarity=0.154 Sum_probs=91.9
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++|.+...+.|.+++. -...+.++|+.|+|||++|+.+++.+...-+..- . +.+.......+..
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~------~----pC~~C~~C~~i~~ 84 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG------E----PCNECEICKAITN 84 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------C----CCCccHHHHHHhc
Confidence 5789999999999999987 3556788999999999999999987532110000 0 0000011111110
Q ss_pred HHhcC-----C---CCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhh
Q 041923 285 EVLRD-----E---NVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLK 348 (529)
Q Consensus 285 ~~~~~-----~---~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~ 348 (529)
....+ . ..++.+..+.+.. .++.-++|+|+++ .......|+..+......+.+|++|.+ ..+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 00000 0 0011122222222 2456688999997 445677888777655455555555543 32222
Q ss_pred hcCCCccceEeccCCCcCC-----------CCCcccHHHHHHHHHHHhCCChHH
Q 041923 349 NGGVKEKDIYEMKALECEN-----------LPNEVGYQELSEKIINYAQGVPLA 391 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~~~~~~i~~~~~G~PLa 391 (529)
.. ......+++.+++... ... .-..+.+..|++.++|.+.-
T Consensus 165 tI-~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 165 TI-LSRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HH-HhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 21 1111456666665510 010 11235566677777777653
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.85 E-value=0.00021 Score=70.01 Aligned_cols=131 Identities=12% Similarity=0.125 Sum_probs=67.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccC--cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNF--EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
.+.++|.+|+|||++|+.+++.+.... ....|+..- ...+.. ...+... .....+.+. ..+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~~l~~----~~~g~~~--~~~~~~~~~--a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RDDLVG----QYIGHTA--PKTKEILKR--AMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HHHHhH----hhcccch--HHHHHHHHH--ccC
Confidence 689999999999999999888664321 111222100 111111 1111110 011111111 134
Q ss_pred EEEEEcCCCC-----------HHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc--------CCCccceEeccCCCcCCC
Q 041923 308 ALIVLDDVTC-----------FRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG--------GVKEKDIYEMKALECENL 368 (529)
Q Consensus 308 ~LLVlDdv~~-----------~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~--------~~~~~~~~~l~~L~~~~~ 368 (529)
-+|+||+++. .+..+.|+..+.....+.+||+++.....-... .+. ..+.+++++.
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~--~~i~fp~l~~--- 197 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVA--HHVDFPDYSE--- 197 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC--cEEEeCCcCH---
Confidence 6899999962 223455666655444566777776532221111 112 4577777762
Q ss_pred CCcccHHHHHHHHHHHh
Q 041923 369 PNEVGYQELSEKIINYA 385 (529)
Q Consensus 369 ~~~~~~~~~~~~i~~~~ 385 (529)
++...+....++..
T Consensus 198 ---edl~~I~~~~l~~~ 211 (284)
T TIGR02880 198 ---AELLVIAGLMLKEQ 211 (284)
T ss_pred ---HHHHHHHHHHHHHh
Confidence 45566666666654
No 107
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00024 Score=73.95 Aligned_cols=99 Identities=15% Similarity=0.241 Sum_probs=55.9
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..+.|+|.+|+|||+|+..+++.+...++ ..+.+... ..+...+...+.. .....+.+.+....
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~-----~~~~~f~~~~~~~~ 195 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKE-----GKLNEFREKYRKKV 195 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhc-----ccHHHHHHHHHhcC
Confidence 46999999999999999999998876553 23333221 2233333333321 12333444444456
Q ss_pred EEEEEcCCCCH---HHH-HHHHhccCC-CCCCcEEEEEeC
Q 041923 308 ALIVLDDVTCF---RQI-KFLIRSLDW-FMPESRIIITTR 342 (529)
Q Consensus 308 ~LLVlDdv~~~---~~l-~~l~~~~~~-~~~gs~IliTtR 342 (529)
-+|+|||++.. ... +.+...+.. ...|..||+||.
T Consensus 196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 196 DVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred CEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 68999999632 111 222222111 123557888875
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0014 Score=70.58 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=39.6
Q ss_pred CCcccccchhHHhHHHHhc--c-CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--A-APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~-~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+||.+...+.|.+.+. . ...+.++|..|+||||+|+.+++.+.
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 5679999999999999987 2 35578999999999999999998753
No 109
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.82 E-value=0.00023 Score=73.72 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=54.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..+.|+|.+|+|||+|++.+++.+..+.+ ..+.+.+. ..+...+...+... ....+.+.+.+ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~----------~~~~~~~~~~~~~~-----~~~~~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS----------EKFTNDFVNALRNN-----KMEEFKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH----------HHHHHHHHHHHHcC-----CHHHHHHHHHh-C
Confidence 46899999999999999999998876643 23333221 22223333333211 23344444443 3
Q ss_pred EEEEEcCCCCH----HHHHHHHhccCCC-CCCcEEEEEeCc
Q 041923 308 ALIVLDDVTCF----RQIKFLIRSLDWF-MPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~~~----~~l~~l~~~~~~~-~~gs~IliTtR~ 343 (529)
-+|||||++.. ...+.+...+... ..+..+|+|+..
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 47889999632 1112232222111 245567887764
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.0005 Score=64.93 Aligned_cols=243 Identities=20% Similarity=0.248 Sum_probs=126.6
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
-..|||-++..+.|.=.+. ..--|.++|++|.||||||.-+++++..++. +........ +.++..++.
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k----~tsGp~leK-~gDlaaiLt 99 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK----ITSGPALEK-PGDLAAILT 99 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE----ecccccccC-hhhHHHHHh
Confidence 4689999988888777765 4567999999999999999999998866533 111110111 223322221
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCH--HHHHHHHhccCCC--------CCCc-----------EEEE
Q 041923 281 KLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCF--RQIKFLIRSLDWF--------MPES-----------RIII 339 (529)
Q Consensus 281 ~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~--~~l~~l~~~~~~~--------~~gs-----------~Ili 339 (529)
. |+. .=+|.+|.++.. ..-+-|-+....+ ++++ .|=.
T Consensus 100 ~---------------------Le~-~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGA 157 (332)
T COG2255 100 N---------------------LEE-GDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGA 157 (332)
T ss_pred c---------------------CCc-CCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeee
Confidence 1 222 225566777522 1112222222111 1222 2335
Q ss_pred EeCcchhhh----hcCCC-ccceEeccCCCc------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHH
Q 041923 340 TTRDQKVLK----NGGVK-EKDIYEMKALEC------ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWE 408 (529)
Q Consensus 340 TtR~~~~~~----~~~~~-~~~~~~l~~L~~------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~ 408 (529)
|||.-.+.. ..|+. ..+-|.+..|.. .-+.. +-.++.+.+|+++..|-|.-..-+-+.++. +
T Consensus 158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----f- 230 (332)
T COG2255 158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLLRRVRD-----F- 230 (332)
T ss_pred ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHHHHHHH-----H-
Confidence 777533221 12221 112233333332 11111 233567788888999998643333332211 1
Q ss_pred HHHHHHhh--ccch----hHHHHHHHhHhCCCHHhHHHHHhhcccc--CCCCHHHHHHHHHHcCCchhhHHH-HHhhCCc
Q 041923 409 NAINELKR--ILNM----EIQKVLKISFDGLDDEQKNIFLDIACFF--KGEDKEFVIKFLDACGFAAQIGIS-DLVDKSL 479 (529)
Q Consensus 409 ~~l~~l~~--~~~~----~i~~~l~~s~~~L~~~~~~~l~~la~f~--~~~~~~~l~~l~~~~~~~~~~~l~-~L~~~sL 479 (529)
..... ..+. .....|..-=..|+...++.|..+.-.+ .+...+.+...+..+....++.++ -|++.|+
T Consensus 231 ---a~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gf 307 (332)
T COG2255 231 ---AQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGF 307 (332)
T ss_pred ---HHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhch
Confidence 11111 1111 1223333333457777777777666544 445788887777665554544444 3789999
Q ss_pred EEEe-CCeE
Q 041923 480 IIIH-GNSI 487 (529)
Q Consensus 480 l~~~-~~~~ 487 (529)
|+.. .|++
T Consensus 308 i~RTpRGR~ 316 (332)
T COG2255 308 IQRTPRGRI 316 (332)
T ss_pred hhhCCCcce
Confidence 9887 4543
No 111
>PRK09183 transposase/IS protein; Provisional
Probab=97.81 E-value=0.0003 Score=67.84 Aligned_cols=36 Identities=25% Similarity=0.201 Sum_probs=27.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
....+.|+|.+|+|||+||..+++........+.|+
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 677899999999999999999988755443333343
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.78 E-value=9.5e-05 Score=76.17 Aligned_cols=48 Identities=33% Similarity=0.493 Sum_probs=40.0
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
..+.|.+.++++|.+.+. ..+.+.|+|++|+|||+||+.+++.....|
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 456899999999988764 356799999999999999999999875543
No 113
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.77 E-value=9.8e-05 Score=74.14 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=61.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC----------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD---------- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---------- 295 (529)
....++|+|.+|+|||||++.+++.+..+ |+..+|+...++. .....++++.++..+.......+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER---~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER---PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC---CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 78899999999999999999999987666 8888887765442 356788888885544332222111
Q ss_pred HHHHHHH-hCCCcEEEEEcCCCCH
Q 041923 296 IEFNFTR-LSRRKALIVLDDVTCF 318 (529)
Q Consensus 296 ~~~l~~~-l~~~~~LLVlDdv~~~ 318 (529)
.+..... -.+++++|++|.+...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 1111111 3578999999999644
No 114
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00016 Score=70.42 Aligned_cols=133 Identities=23% Similarity=0.382 Sum_probs=78.7
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCC
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPG 273 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 273 (529)
...=|-+.++++|++... .++-|.+||+||.|||-||++++++... .|+..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-----tFIrvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-----TFIRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----eEEEecc-------
Confidence 345578999999998765 6788999999999999999999987643 3443221
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-CCCcEEEEEcCCCC-------------HHH---HHHHHhccCCCCC--C
Q 041923 274 GLARLQQKLLSEVLRDENVIPDIEFNFTRL-SRRKALIVLDDVTC-------------FRQ---IKFLIRSLDWFMP--E 334 (529)
Q Consensus 274 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-~~~~~LLVlDdv~~-------------~~~---l~~l~~~~~~~~~--g 334 (529)
..+.+..+ ++.. .-+..+.+.- .+.+++|.+|.++. .+. +-+|+..+.-|.+ .
T Consensus 219 --SElVqKYi----GEGa--RlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 --SELVQKYI----GEGA--RLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred --HHHHHHHh----ccch--HHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 11222111 1110 0022222222 35789999999942 111 3345555655554 4
Q ss_pred cEEEEEeCcchh-----hhhcCCCccceEeccCC
Q 041923 335 SRIIITTRDQKV-----LKNGGVKEKDIYEMKAL 363 (529)
Q Consensus 335 s~IliTtR~~~~-----~~~~~~~~~~~~~l~~L 363 (529)
.+||..|-...+ +....++ ..++++.-
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~D--RkIEfplP 322 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFD--RKIEFPLP 322 (406)
T ss_pred eEEEEecCCccccChhhcCCCccc--ceeecCCC
Confidence 588888765444 3333445 55655533
No 115
>PRK06526 transposase; Provisional
Probab=97.75 E-value=0.00028 Score=67.73 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=25.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
....+.|+|.+|+|||+||..+++.....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 67789999999999999999999887654
No 116
>PRK12377 putative replication protein; Provisional
Probab=97.73 E-value=0.00018 Score=68.50 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=45.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
+...+.|+|.+|+|||+||..+++.+......++++. ...+...+-...... .....+.+.+ .+
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-----------~~~l~~~l~~~~~~~----~~~~~~l~~l-~~ 163 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-----------VPDVMSRLHESYDNG----QSGEKFLQEL-CK 163 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-----------HHHHHHHHHHHHhcc----chHHHHHHHh-cC
Confidence 4578999999999999999999999876654455543 223333333322111 1122233333 34
Q ss_pred cEEEEEcCC
Q 041923 307 KALIVLDDV 315 (529)
Q Consensus 307 ~~LLVlDdv 315 (529)
.-||||||+
T Consensus 164 ~dLLiIDDl 172 (248)
T PRK12377 164 VDLLVLDEI 172 (248)
T ss_pred CCEEEEcCC
Confidence 568999999
No 117
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.71 E-value=0.0011 Score=64.05 Aligned_cols=106 Identities=15% Similarity=0.146 Sum_probs=69.0
Q ss_pred CCcccccc---hhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhccCcce-----EEEEecccccCCCCc
Q 041923 208 KNHLVGVE---SKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGS-----CFLQNVRKESQSPGG 274 (529)
Q Consensus 208 ~~~fvGR~---~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~-----~~~~~~~~~~~~~~~ 274 (529)
.+.+||-. ..++.|.++|. ..+.+.|+|.+|+|||+++++|...+-..++.. ++... . ....+
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq---~-P~~p~ 108 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ---M-PPEPD 108 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe---c-CCCCC
Confidence 34566643 34566666666 567899999999999999999998764444321 22221 2 22567
Q ss_pred HHHHHHHHHHHHhcCCCCCCC----HHHHHHHhCC-CcEEEEEcCCCC
Q 041923 275 LARLQQKLLSEVLRDENVIPD----IEFNFTRLSR-RKALIVLDDVTC 317 (529)
Q Consensus 275 ~~~l~~~ll~~~~~~~~~~~~----~~~l~~~l~~-~~~LLVlDdv~~ 317 (529)
...+...++..++..-..... .......++. +.=+||+|.+++
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 888888999888776544333 2223344443 445899999964
No 118
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.70 E-value=5.9e-05 Score=68.37 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=44.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
...-+.|+|.+|+|||.||..+++....+-..+.|+. ..+++..+-.. . .......+.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-----------~~~L~~~l~~~----~-~~~~~~~~~~~l~~- 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-----------ASDLLDELKQS----R-SDGSYEELLKRLKR- 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-----------HHHHHHHHHCC----H-CCTTHCHHHHHHHT-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-----------cCceecccccc----c-cccchhhhcCcccc-
Confidence 6778999999999999999999998766544455553 33444444221 1 11123334444443
Q ss_pred cEEEEEcCCC
Q 041923 307 KALIVLDDVT 316 (529)
Q Consensus 307 ~~LLVlDdv~ 316 (529)
.=||||||+-
T Consensus 109 ~dlLilDDlG 118 (178)
T PF01695_consen 109 VDLLILDDLG 118 (178)
T ss_dssp SSCEEEETCT
T ss_pred ccEecccccc
Confidence 3477899994
No 119
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00012 Score=63.03 Aligned_cols=29 Identities=34% Similarity=0.387 Sum_probs=25.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+.|+|.+|+||||+++.+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 46799999999999999999999876654
No 120
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.69 E-value=0.00039 Score=72.96 Aligned_cols=99 Identities=15% Similarity=0.243 Sum_probs=55.0
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcc-eEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEG-SCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..+.|+|.+|+|||+|+..+++.+..+++. .+.+.+. ..+...+...+.. .....+.+.+++ .
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~~~~~~~~-----~~~~~~~~~~~~-~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTNDFVNALRN-----NTMEEFKEKYRS-V 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHc-----CcHHHHHHHHhc-C
Confidence 579999999999999999999998776543 2222221 2222333333221 123344444443 4
Q ss_pred EEEEEcCCCCH----HHHHHHHhccCC-CCCCcEEEEEeCc
Q 041923 308 ALIVLDDVTCF----RQIKFLIRSLDW-FMPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~~~----~~l~~l~~~~~~-~~~gs~IliTtR~ 343 (529)
-+|||||++.. ...+.+...+.. ...|..+|+||..
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~ 253 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDR 253 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 48899999532 112223222111 1235568888765
No 121
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.0021 Score=66.85 Aligned_cols=98 Identities=12% Similarity=0.206 Sum_probs=54.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKA 308 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~ 308 (529)
..+.|+|.+|+|||+|+..+++.+......++++. ...+...+...+.. .....++..++ ..-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~-----~~~~~f~~~~~-~~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRS-----GEMQRFRQFYR-NVD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhc-----chHHHHHHHcc-cCC
Confidence 56899999999999999999998765433344442 12233333333221 11233444443 345
Q ss_pred EEEEcCCCCH----HHHHHHHhccCC-CCCCcEEEEEeCc
Q 041923 309 LIVLDDVTCF----RQIKFLIRSLDW-FMPESRIIITTRD 343 (529)
Q Consensus 309 LLVlDdv~~~----~~l~~l~~~~~~-~~~gs~IliTtR~ 343 (529)
+|++||+... ...+.+...+.. ...|..||+||..
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 8888998532 112222222111 1245678888854
No 122
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.67 E-value=0.0019 Score=66.29 Aligned_cols=237 Identities=16% Similarity=0.086 Sum_probs=127.1
Q ss_pred cccchhHHhHHHHhccCC-EEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCC
Q 041923 212 VGVESKVGEIESLLAAAP-LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDE 290 (529)
Q Consensus 212 vGR~~~l~~l~~~L~~~~-~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 290 (529)
.-|..-+.++.+.+...+ ++.|.|+-++|||||++.+....... .+++........ ...+.+....+
T Consensus 20 ~~~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~-~~~l~d~~~~~-------- 87 (398)
T COG1373 20 IERRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLD-RIELLDLLRAY-------- 87 (398)
T ss_pred hhHHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcc-hhhHHHHHHHH--------
Confidence 334455666666666334 99999999999999997776655444 444442222111 11111111111
Q ss_pred CCCCCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc----CCCccceEeccCCCcC
Q 041923 291 NVIPDIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG----GVKEKDIYEMKALECE 366 (529)
Q Consensus 291 ~~~~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~----~~~~~~~~~l~~L~~~ 366 (529)
.+.-..++.+++||.|.....|...+..+...++. +|++|+-+....... -......+++.||+..
T Consensus 88 ---------~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~ 157 (398)
T COG1373 88 ---------IELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFR 157 (398)
T ss_pred ---------HHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHH
Confidence 11111277899999999999988887777655555 889988875443221 1112367889998872
Q ss_pred CCCCc---ccHH---HHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHHhhccchhHHHHHHHhH-hCCCHHhHH
Q 041923 367 NLPNE---VGYQ---ELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINELKRILNMEIQKVLKISF-DGLDDEQKN 439 (529)
Q Consensus 367 ~~~~~---~~~~---~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~l~~~~~~~i~~~l~~s~-~~L~~~~~~ 439 (529)
..... .... ...-+-.-.+||.|.++..-...-. ....+.. ....++ .+..- ... ...++
T Consensus 158 Efl~~~~~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~---~~~~Di---~~~~~~~~~-~~~k~ 224 (398)
T COG1373 158 EFLKLKGEEIEPSKLELLFEKYLETGGFPESVKADLSEKK------LKEYLDT---ILKRDI---IERGKIENA-DLMKR 224 (398)
T ss_pred HHHhhcccccchhHHHHHHHHHHHhCCCcHHHhCcchhhH------HHHHHHH---HHHHHH---HHHcCcccH-HHHHH
Confidence 21100 0000 1112223357999987754322111 0111111 011111 11110 111 34555
Q ss_pred HHHhhccc-cCCCCHHHHHHHHH-HcCCchhhHHHHHhhCCcEEEe
Q 041923 440 IFLDIACF-FKGEDKEFVIKFLD-ACGFAAQIGISDLVDKSLIIIH 483 (529)
Q Consensus 440 ~l~~la~f-~~~~~~~~l~~l~~-~~~~~~~~~l~~L~~~sLl~~~ 483 (529)
++..++-. +...+.+.+...+. .........++.|.+.-++...
T Consensus 225 i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~~ 270 (398)
T COG1373 225 ILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFLV 270 (398)
T ss_pred HHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEEe
Confidence 55555544 45568888888884 3433455667778777777643
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.65 E-value=0.00027 Score=69.31 Aligned_cols=105 Identities=24% Similarity=0.364 Sum_probs=69.8
Q ss_pred CCcccccchhHHhHHHHhc----c-CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----A-APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~-~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
.+.|.+|+.++..|..++. . +..|.|+|-.|.|||.+.+++.+.... ..+|+..+. -.....+...+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~e-----cft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVE-----CFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHH-----hccHHHHHHHH
Confidence 4679999999999999997 2 334589999999999999999987632 345665333 34566677777
Q ss_pred HHHHhcCCCCCCC-----------HHHHHH--HhC--CCcEEEEEcCCCCHHH
Q 041923 283 LSEVLRDENVIPD-----------IEFNFT--RLS--RRKALIVLDDVTCFRQ 320 (529)
Q Consensus 283 l~~~~~~~~~~~~-----------~~~l~~--~l~--~~~~LLVlDdv~~~~~ 320 (529)
+......+..... +..+.+ ... ++.++|||||++...+
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 7776411111111 222222 222 3589999999975543
No 124
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.0011 Score=66.08 Aligned_cols=86 Identities=14% Similarity=0.188 Sum_probs=52.0
Q ss_pred cEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcch-hhhhcCCCccceEeccCCCcC--------CCCCcccHH
Q 041923 307 KALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQK-VLKNGGVKEKDIYEMKALECE--------NLPNEVGYQ 375 (529)
Q Consensus 307 ~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~l~~L~~~--------~~~~~~~~~ 375 (529)
+-++|+|+++ +.+..+.|+..+....+++.+|+||.+.. ++... ......+.+.+++.. ..+. ...
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI-~SRc~~~~~~~~~~~~~~~~L~~~~~~--~~~ 183 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTI-KSRCQQQACPLPSNEESLQWLQQALPE--SDE 183 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHH-HhhceeeeCCCcCHHHHHHHHHHhccc--CCh
Confidence 3345679997 56678888888876667788888887753 33221 111156777777651 1111 123
Q ss_pred HHHHHHHHHhCCChHHHHHH
Q 041923 376 ELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 376 ~~~~~i~~~~~G~PLal~~~ 395 (529)
+.+..++..++|.|+....+
T Consensus 184 ~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 184 RERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 44556788899999754433
No 125
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00042 Score=76.39 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=40.8
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-+.++||+.++.++.+.|. ....+.|+|.+|+|||+||+.+++++..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~ 233 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3569999999999999888 4567789999999999999999987643
No 126
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00046 Score=71.47 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=41.9
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+=|.++.+.+|..++. ..+-|.+||++|.|||.||..++.++.-.|
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf 251 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF 251 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce
Confidence 4678899999999998875 678999999999999999999998875443
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.62 E-value=0.00059 Score=73.98 Aligned_cols=45 Identities=27% Similarity=0.405 Sum_probs=38.7
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.++|++..++.+.+.+. ....+.|+|++|+||||||+.+.+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999998887776 56679999999999999999998755
No 128
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.62 E-value=0.018 Score=58.26 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=32.4
Q ss_pred cchhHHhHHHHhc--cCCEEEEEecCcchHHHHH-HHHHHH
Q 041923 214 VESKVGEIESLLA--AAPLVGIWGMGGIGKTTIA-RAVFNK 251 (529)
Q Consensus 214 R~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa-~~~~~~ 251 (529)
|.+.+++|..||. ....|.|.|+-|+||+.|+ .++.+.
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~ 41 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKD 41 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhC
Confidence 5677899999998 6779999999999999999 666553
No 129
>PRK06620 hypothetical protein; Validated
Probab=97.60 E-value=0.00031 Score=65.66 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=21.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+.+.|||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 669999999999999999877654
No 130
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.60 E-value=0.00058 Score=64.93 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=45.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
...+.++|.+|+|||+||..+++.+......++++. ...+...+-..... .......+.+.+. +.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-----------~~~l~~~l~~~~~~---~~~~~~~~l~~l~-~~ 163 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-----------VADIMSAMKDTFSN---SETSEEQLLNDLS-NV 163 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-----------HHHHHHHHHHHHhh---ccccHHHHHHHhc-cC
Confidence 457999999999999999999998876544444442 23333333322211 1112334445555 34
Q ss_pred EEEEEcCCC
Q 041923 308 ALIVLDDVT 316 (529)
Q Consensus 308 ~LLVlDdv~ 316 (529)
=||||||+.
T Consensus 164 dlLvIDDig 172 (244)
T PRK07952 164 DLLVIDEIG 172 (244)
T ss_pred CEEEEeCCC
Confidence 478889994
No 131
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.00098 Score=70.89 Aligned_cols=99 Identities=12% Similarity=0.234 Sum_probs=54.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
..+.|+|..|+|||.|+..+++.....+. ..+.+.. ...+...+...+.. .....+++.+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~-----~~~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRD-----GKGDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHh-----ccHHHHHHHhhc-C
Confidence 45899999999999999999998765432 2233321 22233333333221 112334444443 3
Q ss_pred EEEEEcCCCCH---HH-HHHHHhccCCC-CCCcEEEEEeCc
Q 041923 308 ALIVLDDVTCF---RQ-IKFLIRSLDWF-MPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~~~---~~-l~~l~~~~~~~-~~gs~IliTtR~ 343 (529)
=+|||||++.. +. -+.|+..+... ..+..|||||..
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~ 419 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDR 419 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 47888999522 11 12222222111 245678888875
No 132
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.57 E-value=0.0087 Score=57.36 Aligned_cols=142 Identities=21% Similarity=0.268 Sum_probs=83.3
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc--cCcceEEEEecccccCCCCcHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR--NFEGSCFLQNVRKESQSPGGLARLQQKLL 283 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 283 (529)
.+.++|-+..++-|.+.+. ..+....+|++|.|||+-|+.++..+-. -|+.++.-.+..... +.. +.+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gis-vvr~-- 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GIS-VVRE-- 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----ccc-chhh--
Confidence 5789999999999999887 6889999999999999999999987633 355554433322211 111 0000
Q ss_pred HHHhcCCCCCCCHHHHHHHh---C---CCc-EEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCc-chhhhhcCCC
Q 041923 284 SEVLRDENVIPDIEFNFTRL---S---RRK-ALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRD-QKVLKNGGVK 353 (529)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~~l---~---~~~-~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~ 353 (529)
.+.....+.... . .++ -++|||+++. .+.|..|.+.+..+...++.|+.+-. ..+.... ..
T Consensus 108 --------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi-~S 178 (346)
T KOG0989|consen 108 --------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL-VS 178 (346)
T ss_pred --------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH-Hh
Confidence 000111111111 1 123 4789999985 45688888887766666765544433 2221111 11
Q ss_pred ccceEeccCCCc
Q 041923 354 EKDIYEMKALEC 365 (529)
Q Consensus 354 ~~~~~~l~~L~~ 365 (529)
.-..+..++|..
T Consensus 179 RC~KfrFk~L~d 190 (346)
T KOG0989|consen 179 RCQKFRFKKLKD 190 (346)
T ss_pred hHHHhcCCCcch
Confidence 114566666665
No 133
>CHL00181 cbbX CbbX; Provisional
Probab=97.55 E-value=0.0011 Score=64.81 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.8
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+.++|.+|+|||++|+.+++.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY 84 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3488999999999999999998653
No 134
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.54 E-value=0.0033 Score=62.21 Aligned_cols=163 Identities=14% Similarity=0.123 Sum_probs=86.6
Q ss_pred HHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccC------------------cceEEEEecccccCCCCcHH
Q 041923 218 VGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNF------------------EGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 218 l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------------------~~~~~~~~~~~~~~~~~~~~ 276 (529)
.+.|...+. -...+.++|+.|+||+++|..+++.+--.- +...++....+. . ....
T Consensus 13 ~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~-~-~~k~- 89 (319)
T PRK08769 13 YDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR-T-GDKL- 89 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc-c-cccc-
Confidence 445555555 234688999999999999999998653221 111111000000 0 0000
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hhhh
Q 041923 277 RLQQKLLSEVLRDENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KVLK 348 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~ 348 (529)
.....++.+..+.+.+. ++.=++|+|+++ +...-+.|+..+....+++.+|++|.+. .++.
T Consensus 90 -----------~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 90 -----------RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -----------cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 00000111223333322 345688999997 4566778888887767788777777653 3333
Q ss_pred hcCCCccceEeccCCCcCCC----CCcccHHHHHHHHHHHhCCChHHHHHH
Q 041923 349 NGGVKEKDIYEMKALECENL----PNEVGYQELSEKIINYAQGVPLALEIL 395 (529)
Q Consensus 349 ~~~~~~~~~~~l~~L~~~~~----~~~~~~~~~~~~i~~~~~G~PLal~~~ 395 (529)
... .....+.+.+++.... .......+.+..++..++|.|+....+
T Consensus 159 TIr-SRCq~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIR-SRCQRLEFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHH-hhheEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHHH
Confidence 221 1115666766655100 000011233567889999999855433
No 135
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.52 E-value=0.0022 Score=63.62 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=47.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccccc-CCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKES-QSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSR 305 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~ 305 (529)
.++.++|||++|.|||.+|+.+++++...| +..+..+.. .-.....+.+++++...... ..-+.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~-----------a~~~~ 211 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAADI-----------IKKKG 211 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHHH-----------hhccC
Confidence 467899999999999999999999875432 232222221 11233445555554432110 00146
Q ss_pred CcEEEEEcCCC
Q 041923 306 RKALIVLDDVT 316 (529)
Q Consensus 306 ~~~LLVlDdv~ 316 (529)
++++|+||+++
T Consensus 212 aPcVLFIDEID 222 (413)
T PLN00020 212 KMSCLFINDLD 222 (413)
T ss_pred CCeEEEEehhh
Confidence 89999999994
No 136
>CHL00176 ftsH cell division protein; Validated
Probab=97.51 E-value=0.0027 Score=68.81 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=36.0
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++|.+...+++.+.+. ..+-+.++|++|+|||+||+.++...
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568888877777766653 24579999999999999999999875
No 137
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.50 E-value=0.00033 Score=64.42 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=61.8
Q ss_pred cchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHH--hccCcceEEEEecccccCC----CCcHHHH----HHHHH
Q 041923 214 VESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKI--SRNFEGSCFLQNVRKESQS----PGGLARL----QQKLL 283 (529)
Q Consensus 214 R~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~----~~~~~~l----~~~ll 283 (529)
+..+-....+.|....++.+.|++|.|||.||.+.+-+. ...|...++....-+.... +.+..+- ..-+.
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~ 84 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIY 84 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHH
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHH
Confidence 344455555656688899999999999999999998753 3557766666543321110 1111111 11111
Q ss_pred HHHhcCCCCCCCHHHHHH----------HhCC---CcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 284 SEVLRDENVIPDIEFNFT----------RLSR---RKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~----------~l~~---~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
..+.. .......+.+.+ .+++ .+.++|+|++. +.+++..++... +.+|++|++--.
T Consensus 85 d~l~~-~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 85 DALEE-LFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp HHHTT-TS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred HHHHH-HhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 11111 101112222221 2333 36799999996 556787776654 689999998654
No 138
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.50 E-value=0.0017 Score=57.83 Aligned_cols=135 Identities=14% Similarity=0.207 Sum_probs=72.7
Q ss_pred ccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc--------------------CcceEEEEeccccc
Q 041923 213 GVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN--------------------FEGSCFLQNVRKES 269 (529)
Q Consensus 213 GR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~ 269 (529)
|-+...+.|.+.+. -...+.++|..|+||+++|..+++.+-.. ++...++... +..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-ccc
Confidence 34555666777766 35578999999999999999999975221 2333333211 100
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcch-h
Q 041923 270 QSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQK-V 346 (529)
Q Consensus 270 ~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~-~ 346 (529)
. .-....+. .+...+.... ..++.=++|+||++ +.+....|+..+.....++.+|++|.+.. +
T Consensus 80 ~-~i~i~~ir-~i~~~~~~~~------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 80 K-SIKIDQIR-EIIEFLSLSP------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp S-SBSHHHHH-HHHHHCTSS-------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred c-hhhHHHHH-HHHHHHHHHH------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 0 11122211 2222211110 12345688999997 55677888888877778999998888754 2
Q ss_pred hhhcCCCccceEeccCC
Q 041923 347 LKNGGVKEKDIYEMKAL 363 (529)
Q Consensus 347 ~~~~~~~~~~~~~l~~L 363 (529)
+.... .....+.+.++
T Consensus 146 l~TI~-SRc~~i~~~~l 161 (162)
T PF13177_consen 146 LPTIR-SRCQVIRFRPL 161 (162)
T ss_dssp -HHHH-TTSEEEEE---
T ss_pred hHHHH-hhceEEecCCC
Confidence 22211 11145666554
No 139
>PRK06921 hypothetical protein; Provisional
Probab=97.49 E-value=0.00044 Score=66.92 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=29.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQ 263 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 263 (529)
...+.++|.+|+|||.||..+++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 5679999999999999999999988765 34445554
No 140
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0022 Score=64.27 Aligned_cols=133 Identities=13% Similarity=0.107 Sum_probs=78.3
Q ss_pred cccc-cchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc---------------------CcceEEEEe
Q 041923 210 HLVG-VESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN---------------------FEGSCFLQN 264 (529)
Q Consensus 210 ~fvG-R~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~ 264 (529)
.++| -+..++.|.+.+. -.....++|+.|+|||++|..+++.+-.. ++...++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~ 85 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAP 85 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEecc
Confidence 3566 6667777888776 35567999999999999999999875321 111111110
Q ss_pred cccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEE
Q 041923 265 VRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRI 337 (529)
Q Consensus 265 ~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~I 337 (529)
. +. .- .++.+..+.+.+ .+.+=++|+|+++ +.+..+.|+..+....+++.+
T Consensus 86 ~-~~---~i------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~ 143 (329)
T PRK08058 86 D-GQ---SI------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTA 143 (329)
T ss_pred c-cc---cC------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceE
Confidence 0 00 00 011122222222 2345578999997 455677888888766778878
Q ss_pred EEEeCcch-hhhhcCCCccceEeccCCCc
Q 041923 338 IITTRDQK-VLKNGGVKEKDIYEMKALEC 365 (529)
Q Consensus 338 liTtR~~~-~~~~~~~~~~~~~~l~~L~~ 365 (529)
|++|.+.. +.... ......+++.+++.
T Consensus 144 Il~t~~~~~ll~TI-rSRc~~i~~~~~~~ 171 (329)
T PRK08058 144 ILLTENKHQILPTI-LSRCQVVEFRPLPP 171 (329)
T ss_pred EEEeCChHhCcHHH-HhhceeeeCCCCCH
Confidence 87776532 22221 11115677777765
No 141
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.46 E-value=0.00014 Score=64.04 Aligned_cols=64 Identities=22% Similarity=0.358 Sum_probs=54.2
Q ss_pred cEEeccCcccc-ccchHHHHHHHHhhC-CCcEEeeC-CCCC--CCCCCcchHHHHhhcceEEEEecccc
Q 041923 27 DVFLSFSRAET-RDSFTSHLRSALCQK-SIETFIDD-QLIR--GDDISESLPDTIAASSISIIIFSERY 90 (529)
Q Consensus 27 dvFis~~~~d~-~~~~~~~l~~~L~~~-g~~~~~d~-~~~~--g~~~~~~i~~~i~~s~~~i~v~S~~y 90 (529)
-|||||+.... ....|..|++.|+.. |+.|.+|. +... +..+...+.+.+++++.+|+|+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999998553 236799999999999 99999998 6643 67888999999999999999999654
No 142
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00089 Score=64.29 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=29.7
Q ss_pred ccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 226 AAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 226 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
....-+.++|.+|+|||.||.++++++...-..+.|+
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~ 139 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFI 139 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEE
Confidence 3788999999999999999999999988432333343
No 143
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.44 E-value=0.00073 Score=65.44 Aligned_cols=35 Identities=31% Similarity=0.291 Sum_probs=27.5
Q ss_pred HHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 218 VGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 218 l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
++++..++...+.+.|.|.+|+|||+||+.+++..
T Consensus 11 ~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 11 TSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 44444445566788899999999999999999855
No 144
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.44 E-value=0.00082 Score=67.14 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=60.7
Q ss_pred hHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcce-EEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC
Q 041923 220 EIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGS-CFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD 295 (529)
Q Consensus 220 ~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 295 (529)
++.+.+. ....++|+|.+|+|||||++.+++.+..+.+.+ +++..+.+. .....++.+.+...+.......+.
T Consensus 122 RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER---~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 122 RVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDER---PEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCC---CCCHHHHHHHHhhhEEeecCCCCH
Confidence 3555555 667789999999999999999999887765433 445444433 455677777776655433221111
Q ss_pred ---------HHHHHHHh--CCCcEEEEEcCCC
Q 041923 296 ---------IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 296 ---------~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
.....+++ .+++++||+|++.
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 11122222 4789999999994
No 145
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.43 E-value=0.0021 Score=68.35 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=35.5
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-+.++|.+...+++.+.+. ..+-+.++|++|+|||+||+.++....
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 3568888877666665443 245699999999999999999998753
No 146
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00094 Score=72.51 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=73.7
Q ss_pred CCcccccchhHHhHHHHhc-----------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA-----------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 276 (529)
....+|-+..+..+.+.+. +.......|+.|+|||.||++++..+-..=..-+-+. ..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-----------MS 558 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-----------MS 558 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-----------hH
Confidence 4678899999998888875 3456778999999999999999987743323233221 11
Q ss_pred HHHH-HHHHHHhcCCC---CCCCHHHHHHHhCCCcE-EEEEcCCC--CHHHHHHHHhccC
Q 041923 277 RLQQ-KLLSEVLRDEN---VIPDIEFNFTRLSRRKA-LIVLDDVT--CFRQIKFLIRSLD 329 (529)
Q Consensus 277 ~l~~-~ll~~~~~~~~---~~~~~~~l~~~l~~~~~-LLVlDdv~--~~~~l~~l~~~~~ 329 (529)
+... .-.+.+.+.++ ....-..+-+..+++|+ +|.||.++ +++.++-|+..+.
T Consensus 559 Ey~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 559 EYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred HHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 1111 12223333322 22335667778888876 88899997 6777888877764
No 147
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.41 E-value=0.00063 Score=67.71 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=30.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
....+.++|.+|+|||.||..+++.+..+...++|+.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4588999999999999999999998876654555554
No 148
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.39 E-value=0.00086 Score=64.39 Aligned_cols=89 Identities=16% Similarity=0.277 Sum_probs=60.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|.+|+|||+|+..+++..+.+|...+++..+++. ......+.+.+...-..... ..+.
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer---~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER---TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999999998888888887766543 34555666665543211110 0111
Q ss_pred -----HHHHHHHh---CCCcEEEEEcCCCCH
Q 041923 296 -----IEFNFTRL---SRRKALIVLDDVTCF 318 (529)
Q Consensus 296 -----~~~l~~~l---~~~~~LLVlDdv~~~ 318 (529)
.-.+.+++ +++++||++||+...
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 22334444 378999999999543
No 149
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.39 E-value=0.00084 Score=62.06 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=63.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKA 308 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~ 308 (529)
.++.|.|+.|+||||++..++..+.......++...-..... .... ..+..+.........-.+.++..++..+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~----~~~i~q~~vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESK----RSLINQREVGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCc----cceeeecccCCCccCHHHHHHHHhcCCcC
Confidence 578999999999999999988877654444444321110000 0000 00000000000111125667777887888
Q ss_pred EEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchh
Q 041923 309 LIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKV 346 (529)
Q Consensus 309 LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~ 346 (529)
++++|.+.+.+.+...+.... .|..++.|+.....
T Consensus 77 ~ii~gEird~e~~~~~l~~a~---~G~~v~~t~Ha~~~ 111 (198)
T cd01131 77 VILVGEMRDLETIRLALTAAE---TGHLVMSTLHTNSA 111 (198)
T ss_pred EEEEcCCCCHHHHHHHHHHHH---cCCEEEEEecCCcH
Confidence 999999988887776555432 45557777765433
No 150
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.38 E-value=0.0015 Score=60.25 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=42.9
Q ss_pred CCcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCcc
Q 041923 208 KNHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEG 258 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 258 (529)
-..++|.+...+.|.+-.. ...-|.+||.-|+|||+|++++.+.+...+..
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3578999988888776443 67789999999999999999999999887665
No 151
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.38 E-value=0.00038 Score=71.15 Aligned_cols=46 Identities=26% Similarity=0.279 Sum_probs=40.7
Q ss_pred CcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++.+..++.+...|...+.+.++|++|+|||++|+.+++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4577888899999999988888999999999999999999998754
No 152
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00037 Score=66.81 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=29.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH----hccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI----SRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~----~~~f~~~~~~ 262 (529)
-.|+|.++|+||.|||+|++.+++++ ...|..+..+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li 215 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI 215 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence 46899999999999999999999975 3445555554
No 153
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.005 Score=61.62 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=87.0
Q ss_pred HHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc---------------------CcceEEEEecccccCCCC
Q 041923 218 VGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN---------------------FEGSCFLQNVRKESQSPG 273 (529)
Q Consensus 218 l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~ 273 (529)
-++|.+.+. -.....++|+.|+||+++|..++..+--. ++...++..... .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~--~--- 85 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG--K--- 85 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc--c---
Confidence 445555554 35578899999999999999999865221 111111110000 0
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-h
Q 041923 274 GLARLQQKLLSEVLRDENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-K 345 (529)
Q Consensus 274 ~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~ 345 (529)
..-.++.+..+.+.+. +++=++|+|+++ +.+.-+.|+..+....+++.+|++|.+. .
T Consensus 86 ---------------~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 86 ---------------SSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred ---------------ccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 0001112333333332 455688999997 5567788888888777888877777764 3
Q ss_pred hhhhcCCCccceEeccCCCc--------CCCCCcccHHHHHHHHHHHhCCChHH
Q 041923 346 VLKNGGVKEKDIYEMKALEC--------ENLPNEVGYQELSEKIINYAQGVPLA 391 (529)
Q Consensus 346 ~~~~~~~~~~~~~~l~~L~~--------~~~~~~~~~~~~~~~i~~~~~G~PLa 391 (529)
++....-. ...+.+.+++. ..... ..+.+..++..++|.|..
T Consensus 151 lLpTIrSR-Cq~~~~~~~~~~~~~~~L~~~~~~---~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 151 LLATLRSR-CRLHYLAPPPEQYALTWLSREVTM---SQDALLAALRLSAGAPGA 200 (334)
T ss_pred ChHHHHhc-cccccCCCCCHHHHHHHHHHccCC---CHHHHHHHHHHcCCCHHH
Confidence 44332111 14566766655 11111 123466788899999963
No 154
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.30 E-value=0.0013 Score=73.19 Aligned_cols=110 Identities=14% Similarity=0.219 Sum_probs=64.2
Q ss_pred CCcccccchhHHhHHHHhc-----------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA-----------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 276 (529)
....+|.+..++.|.+.+. ....+.++|++|+|||.||+.+++.+... .+.+ +..+... .....
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~---~~~~-d~se~~~-~~~~~ 527 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVH---LERF-DMSEYME-KHTVS 527 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCC---eEEE-eCchhhh-cccHH
Confidence 4568899988888888775 12357899999999999999999877322 2222 2222111 11111
Q ss_pred HHHHHHHHHHhcCCC--CCCCHHHHHHHhCCC-cEEEEEcCCC--CHHHHHHHHhccC
Q 041923 277 RLQQKLLSEVLRDEN--VIPDIEFNFTRLSRR-KALIVLDDVT--CFRQIKFLIRSLD 329 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~--~~~~~~~l~~~l~~~-~~LLVlDdv~--~~~~l~~l~~~~~ 329 (529)
. +. +.... .......+.+.++.+ ..+++||+++ +++..+.|+..+.
T Consensus 528 ~----li---g~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 528 R----LI---GAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred H----Hh---cCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1 11 11111 112233445555544 4699999997 4555666666543
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.30 E-value=0.0017 Score=73.25 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=67.0
Q ss_pred CCcccccchhHHhHHHHhc-----------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA-----------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 276 (529)
...++|-+..++.|...+. ....+.++|++|+|||+||+.+++.+...-...+ ..+..+... .....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~-~~d~s~~~~-~~~~~ 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMI-RLDMSEYME-KHTVS 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceE-EEEchhccc-cccHH
Confidence 4678899988888888775 1235679999999999999999987643322222 222222211 11121
Q ss_pred HHHHHHHHHHhcCCC--CCCCHHHHHHHhCCCc-EEEEEcCCC--CHHHHHHHHhccC
Q 041923 277 RLQQKLLSEVLRDEN--VIPDIEFNFTRLSRRK-ALIVLDDVT--CFRQIKFLIRSLD 329 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~--~~~~~~~l~~~l~~~~-~LLVlDdv~--~~~~l~~l~~~~~ 329 (529)
.+ ++.... .......+.+.++.++ .+++||+++ +++..+.|+..+.
T Consensus 586 ~l-------~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 586 KL-------IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred Hh-------cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 11 111111 1122334556666555 689999997 5566666666654
No 156
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.30 E-value=0.012 Score=61.45 Aligned_cols=178 Identities=19% Similarity=0.221 Sum_probs=99.7
Q ss_pred CCcccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
.+++||-+...+.|.+.+. -......+|+-|+||||+|+-++.-+--.-.. ... +.+-....+.+..
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~---------~~e-PC~~C~~Ck~I~~ 84 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGP---------TAE-PCGKCISCKEINE 84 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCC---------CCC-cchhhhhhHhhhc
Confidence 4678999999999999998 34556799999999999999999864221100 000 1111111111111
Q ss_pred H-------HhcC-CCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhh
Q 041923 285 E-------VLRD-ENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKN 349 (529)
Q Consensus 285 ~-------~~~~-~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~ 349 (529)
. +... ...+++++.+.+... ++.=+.|+|.|+ +...+..|+..+.........|+.|.+..-...
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1 0000 012233455555443 344588999997 667799999988766677777777776433221
Q ss_pred cCCCccceEeccCCCcCCCCCcccHHHHHHHHHHH--hCCChHHHHHHHHHhcC
Q 041923 350 GGVKEKDIYEMKALECENLPNEVGYQELSEKIINY--AQGVPLALEILGCFLYG 401 (529)
Q Consensus 350 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~i~~~--~~G~PLal~~~a~~L~~ 401 (529)
--+.....|.+..++. .........|+.. ..--+-||..++..-.+
T Consensus 165 TIlSRcq~f~fkri~~------~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 165 TILSRCQRFDFKRLDL------EEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred hhhhccccccccCCCH------HHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 1122225566666654 2233333333321 12345566666555433
No 157
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0071 Score=59.99 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=85.9
Q ss_pred HHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHH-------h
Q 041923 218 VGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEV-------L 287 (529)
Q Consensus 218 l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-------~ 287 (529)
-+.|.+.+. -.....++|+.|+||+++|..++..+--.-+... . +.+.-.-.+.+.... .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~------~----~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD------Q----PCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC------C----CCCCCHHHHHHhcCCCCCEEEEc
Confidence 344555554 2457889999999999999999986532111000 0 000000111110000 0
Q ss_pred c---CCCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hhhhhcCCCccc
Q 041923 288 R---DENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KVLKNGGVKEKD 356 (529)
Q Consensus 288 ~---~~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~ 356 (529)
. ..-.++.+..+.+.+. +++=++|+|+++ +....+.|+..+....+++.+|++|.+. .++.... ....
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~-SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY-SRCQ 159 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH-hhce
Confidence 0 0001122333333332 345578899997 4566788888888777888888877764 3333321 1115
Q ss_pred eEeccCCCcCCCCC-----cccHHHHHHHHHHHhCCChH
Q 041923 357 IYEMKALECENLPN-----EVGYQELSEKIINYAQGVPL 390 (529)
Q Consensus 357 ~~~l~~L~~~~~~~-----~~~~~~~~~~i~~~~~G~PL 390 (529)
.+.+.+++...... .......+..+++.++|.|+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPL 198 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHH
Confidence 77788776511000 00011235566788899996
No 158
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.29 E-value=0.002 Score=57.04 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=26.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
++.|+|.+|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999998765433444443
No 159
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.27 E-value=0.0016 Score=73.60 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCcccccchhHHhHHHHhcc-----------CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLAA-----------APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~-----------~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 276 (529)
...++|.+..++.+...+.. ...+.+.|++|+|||+||+.++..+...-...+.+ +...... ....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~-d~s~~~~-~~~~- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRI-DMSEYME-KHSV- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEE-echhhcc-cchH-
Confidence 45689999999999998861 34688999999999999999998765432223332 2222111 1111
Q ss_pred HHHHHHHHHHhcCCC--CCCCHHHHHHHhCCC-cEEEEEcCCC--CHHHHHHHHhcc
Q 041923 277 RLQQKLLSEVLRDEN--VIPDIEFNFTRLSRR-KALIVLDDVT--CFRQIKFLIRSL 328 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~--~~~~~~~l~~~l~~~-~~LLVlDdv~--~~~~l~~l~~~~ 328 (529)
..+. +.... .......+.+.++.+ ..+|+||+++ +++....|+..+
T Consensus 641 ---~~l~---g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 641 ---ARLI---GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred ---HHhc---CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1111 11111 111123344444433 3589999997 556666666654
No 160
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.27 E-value=0.0023 Score=63.22 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=56.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
.+-+.|+|..|+|||.||..+++.+...-..+.|+. ...++..+-...... ......+.+. +-
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-----------~~~l~~~lk~~~~~~-----~~~~~l~~l~-~~ 218 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-----------FPEFIRELKNSISDG-----SVKEKIDAVK-EA 218 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-----------HHHHHHHHHHHHhcC-----cHHHHHHHhc-CC
Confidence 467999999999999999999999876544455553 223344443333211 1223333333 44
Q ss_pred EEEEEcCCC--CHHHHH--HHHhcc-C-CCCCCcEEEEEeCc
Q 041923 308 ALIVLDDVT--CFRQIK--FLIRSL-D-WFMPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~--~~~~l~--~l~~~~-~-~~~~gs~IliTtR~ 343 (529)
=||||||+. ....|. .++..+ . ....+..+|+||--
T Consensus 219 dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 219 PVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 588999994 222221 222221 1 11245568888864
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0042 Score=62.94 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRK 307 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~ 307 (529)
...+.|||..|.|||.|+.++.+......+...++. .........+...+.. ...+..++.. .-
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~-----~~~~~Fk~~y--~~ 176 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRD-----NEMEKFKEKY--SL 176 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHh-----hhHHHHHHhh--cc
Confidence 678999999999999999999998877766443332 1122233333333221 1233445544 33
Q ss_pred EEEEEcCCCC----HHHHHHHHhccCCC-CCCcEEEEEeCc
Q 041923 308 ALIVLDDVTC----FRQIKFLIRSLDWF-MPESRIIITTRD 343 (529)
Q Consensus 308 ~LLVlDdv~~----~~~l~~l~~~~~~~-~~gs~IliTtR~ 343 (529)
=++++||++- ...-+.+...+... ..|..||+|++.
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr 217 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDR 217 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3889999952 11122333332221 245589999875
No 162
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.013 Score=57.92 Aligned_cols=172 Identities=12% Similarity=0.119 Sum_probs=92.7
Q ss_pred HHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc--------------------CcceEEEEecccccCCCCc
Q 041923 218 VGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN--------------------FEGSCFLQNVRKESQSPGG 274 (529)
Q Consensus 218 l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--------------------f~~~~~~~~~~~~~~~~~~ 274 (529)
-+.|.+.+. -...+.++|+.|+||+++|..+++.+--. ++...++.... ... .-
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~-~I- 88 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK-SI- 88 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC-cC-
Confidence 344555554 34578999999999999999999864211 11111221000 000 00
Q ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hh
Q 041923 275 LARLQQKLLSEVLRDENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KV 346 (529)
Q Consensus 275 ~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~ 346 (529)
.++.+..+.+.+. ++.=++|+|+++ +....+.|+..+....+++.+|++|.+. .+
T Consensus 89 -----------------~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 89 -----------------TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred -----------------CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhC
Confidence 1111222323322 344588899997 5566788888887777888777776654 34
Q ss_pred hhhcCCCccceEeccCCCcCCCCC---cccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041923 347 LKNGGVKEKDIYEMKALECENLPN---EVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINEL 414 (529)
Q Consensus 347 ~~~~~~~~~~~~~l~~L~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~l 414 (529)
++... ..-..+.+.+++...... .... +.+..+++.++|.|+....+ +........+..+..+
T Consensus 152 LpTI~-SRCq~~~~~~~~~~~~~~~L~~~~~-~~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 152 LPTIV-SRCQQWVVTPPSTAQAMQWLKGQGI-TVPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred hHHHH-hcceeEeCCCCCHHHHHHHHHHcCC-chHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 43321 111567777776511000 0000 12356788899999865444 3333334444444333
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.25 E-value=0.0011 Score=73.94 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=39.0
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+.+.|.+..+++|.+.+. ..+.+.|+|++|+|||+||+.+++....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 568899999999988763 3577999999999999999999987643
No 164
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.21 E-value=0.01 Score=61.41 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+|.++|.+|+||||++..++..+...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 5689999999999999999999887654
No 165
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.21 E-value=0.00065 Score=58.87 Aligned_cols=41 Identities=29% Similarity=0.360 Sum_probs=32.2
Q ss_pred cccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 212 VGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 212 vGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
||....++++.+.+. ....|.|+|.+|+||+++|+.+.+.-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577778888888776 67889999999999999999887643
No 166
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.20 E-value=0.0014 Score=73.78 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=38.2
Q ss_pred CCcccccchhHHhHHHHhc-----------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA-----------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++|-+..++.+.+.+. ...++.++|++|+|||.||+.++..+..
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4578899888888888774 1236899999999999999999987644
No 167
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.20 E-value=0.011 Score=59.21 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=37.9
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...++|+...++++.+.+. ....|.|+|.+|+||+++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4569999999999988876 6677999999999999999988753
No 168
>PRK04296 thymidine kinase; Provisional
Probab=97.20 E-value=0.00075 Score=61.95 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=59.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC--CCCCHHHHHHHh---
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN--VIPDIEFNFTRL--- 303 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~--~~~~~~~l~~~l--- 303 (529)
.++.|+|..|.||||++..++.+...+...++++... ... ......+ ...++.... .......+.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~-~~~~~~i----~~~lg~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDD-RYGEGKV----VSRIGLSREAIPVSSDTDIFELIEEE 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccc-cccCCcE----ecCCCCcccceEeCChHHHHHHHHhh
Confidence 4788999999999999999999886654444434210 000 1111111 112211111 011222222222
Q ss_pred CCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcch
Q 041923 304 SRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQK 345 (529)
Q Consensus 304 ~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~~ 345 (529)
.++.-+||+|.+.- .+++..+...+. ..|..||+|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 23556899999953 454555555432 36888999999843
No 169
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.16 E-value=0.0055 Score=61.27 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=71.6
Q ss_pred ccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccC---------------------cceEEEEec
Q 041923 211 LVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNF---------------------EGSCFLQNV 265 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~ 265 (529)
++|-+....++..+.. ....+.++|++|+||||+|..+++.+.... +....+. .
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~-~ 81 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN-P 81 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-c
Confidence 5666667777777765 233599999999999999999999875332 1222221 1
Q ss_pred ccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 266 RKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 266 ~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
..... ........+.+......... .++.-++++|+++. .+....++..+......+.+|++|.+
T Consensus 82 s~~~~-~~i~~~~vr~~~~~~~~~~~------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 82 SDLRK-IDIIVEQVRELAEFLSESPL------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred cccCC-CcchHHHHHHHHHHhccCCC------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCC
Confidence 11111 00122233333222211110 34667999999984 44567777777766778888888874
No 170
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.16 E-value=0.0071 Score=67.56 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=36.9
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..+.|.+...++|.+.+. ..+-+.++|++|+|||+||+.+++.....
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 457788877777777543 35668999999999999999999986543
No 171
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.15 E-value=0.0031 Score=71.19 Aligned_cols=111 Identities=16% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCcccccchhHHhHHHHhc---------c--CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA---------A--APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------~--~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 276 (529)
...++|.+..++.|...+. + ...+.++|++|+|||+||+.+++.+.......+.+ +...... .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i-d~se~~~-----~ 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI-DMSEFME-----K 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE-EhHHhhh-----h
Confidence 4568899999888888875 1 13688999999999999999998764332222322 2221111 0
Q ss_pred HHHHHHHHHHhcCCC-CC--CCHHHHHHHhCCC-cEEEEEcCCC--CHHHHHHHHhcc
Q 041923 277 RLQQKLLSEVLRDEN-VI--PDIEFNFTRLSRR-KALIVLDDVT--CFRQIKFLIRSL 328 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~-~~--~~~~~l~~~l~~~-~~LLVlDdv~--~~~~l~~l~~~~ 328 (529)
. ....+.+..+ .. .....+.+.++.+ .-+|+||+++ +.+....|+..+
T Consensus 641 ~----~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 641 H----SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred h----hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 1 1111222111 11 1122344444433 3699999997 566666666554
No 172
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.14 E-value=0.0013 Score=56.88 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=20.9
Q ss_pred EEEEecCcchHHHHHHHHHHHH
Q 041923 231 VGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
|.|+|.+|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999987
No 173
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.015 Score=58.51 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=25.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.+++|+|.|.+|+||||++..++..+..+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~ 268 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK 268 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 45799999999999999999999877644
No 174
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.13 E-value=0.00076 Score=72.56 Aligned_cols=46 Identities=24% Similarity=0.376 Sum_probs=40.4
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|-++.+++|..++. ..++++|+|++|+||||+++.++..+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5789999999999999987 346799999999999999999998654
No 175
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.12 E-value=0.011 Score=62.24 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=33.8
Q ss_pred CcccccchhHHhHHHHh---c---------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 209 NHLVGVESKVGEIESLL---A---------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L---~---------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+.|.+...+.+.... . .++-|.++|++|+|||.+|+.+++...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 45777776555555421 1 457799999999999999999998764
No 176
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.12 E-value=0.00044 Score=58.31 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.11 E-value=0.0019 Score=71.29 Aligned_cols=108 Identities=11% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCcccccchhHHhHHHHhc-----------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHH
Q 041923 208 KNHLVGVESKVGEIESLLA-----------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLA 276 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 276 (529)
...++|-+..++.|.+.+. ....+.++|++|+|||.||+.++..+... ....+..+... ....
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~----~i~id~se~~~-~~~~- 530 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE----LLRFDMSEYME-RHTV- 530 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC----cEEeechhhcc-cccH-
Confidence 4568899999888888876 12468899999999999999999877321 22222222211 1111
Q ss_pred HHHHHHHHHHhcCCC---CCCCHHHHHHHhCC-CcEEEEEcCCC--CHHHHHHHHhcc
Q 041923 277 RLQQKLLSEVLRDEN---VIPDIEFNFTRLSR-RKALIVLDDVT--CFRQIKFLIRSL 328 (529)
Q Consensus 277 ~l~~~ll~~~~~~~~---~~~~~~~l~~~l~~-~~~LLVlDdv~--~~~~l~~l~~~~ 328 (529)
..+ .+..+ .......+.+.++. ...+|+||+++ +.+..+.|+..+
T Consensus 531 ---~~L----iG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 531 ---SRL----IGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred ---HHH----cCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 122 12111 11112234444444 34699999997 445556665544
No 178
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.10 E-value=0.018 Score=61.42 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|+...++++.+.+. ....|.|+|..|+|||++|+.+.+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 4579999999999988887 678899999999999999999987643
No 179
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.08 E-value=0.0014 Score=61.75 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..-.++|.|.+|+|||+|+..+...+...|..++.+.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 3447889999999999999999999999996554443
No 180
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.00061 Score=58.91 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=27.7
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFL 262 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~ 262 (529)
--|+|+|++|+|||||++.+++.++.+ |..+=|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 358999999999999999999988776 6544443
No 181
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.08 E-value=0.00061 Score=67.72 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=40.9
Q ss_pred CcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..++|.++.++++.+++. ..++++|+|++|+||||||..+++.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 379999999999999886 3688999999999999999999997654
No 182
>PRK14974 cell division protein FtsY; Provisional
Probab=97.08 E-value=0.023 Score=56.75 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
++.+++++|++|+||||++..+++.+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999877654
No 183
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.07 E-value=0.031 Score=54.40 Aligned_cols=179 Identities=20% Similarity=0.203 Sum_probs=105.0
Q ss_pred CcccccchhHHhHHHHhc------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCC-CCcHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQS-PGGLARLQQK 281 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ 281 (529)
..|+|-.++.+.+..++. ....|.|.|+.|.|||.|......+ .+.|......+.+.+.-.. .-.+..+.++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 469999999999999987 7788999999999999999888777 5566666666666554431 1123344444
Q ss_pred HHHHHhcCCC----CCCCHHHHHHHhCC------CcEEEEEcCCCCH------HHHHHHHhccCC-CCCCcEEEEEeCcc
Q 041923 282 LLSEVLRDEN----VIPDIEFNFTRLSR------RKALIVLDDVTCF------RQIKFLIRSLDW-FMPESRIIITTRDQ 344 (529)
Q Consensus 282 ll~~~~~~~~----~~~~~~~l~~~l~~------~~~LLVlDdv~~~------~~l~~l~~~~~~-~~~gs~IliTtR~~ 344 (529)
+..++..... -.+....+...|.. .++++|+|.++-. ..+-.+...... ..|-|.|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 4333332211 22235666666653 4689999988621 224444443221 23556677899963
Q ss_pred hh-------hhhcCCCccceEeccCCCcCCCCCcccHHHHHHHHHHHhCCChHHHHHHH
Q 041923 345 KV-------LKNGGVKEKDIYEMKALECENLPNEVGYQELSEKIINYAQGVPLALEILG 396 (529)
Q Consensus 345 ~~-------~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a 396 (529)
-. -+..... .++-+++++ - .++.++.+++...-.|.+.++...-
T Consensus 183 ~lE~LEKRVKSRFshr--~I~m~~~~~-----l-~~yv~l~r~ll~v~~e~~~~~~~wn 233 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHR--VIFMLPSLP-----L-GDYVDLYRKLLSVPAEFSDFAEKWN 233 (408)
T ss_pred HHHHHHHHHHhhcccc--eeeccCCCC-----h-HHHHHHHHHHhcCCccCccHHHHHH
Confidence 22 2221111 122222222 2 4567777777665566665544443
No 184
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.022 Score=57.04 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=50.4
Q ss_pred CcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhhhcCCCccceEeccCCCcC-------CCCCcccHH
Q 041923 306 RKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLKNGGVKEKDIYEMKALECE-------NLPNEVGYQ 375 (529)
Q Consensus 306 ~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~~~~~~l~~L~~~-------~~~~~~~~~ 375 (529)
+.=++|+|+++ +.+..+.|+..+....+++.+|++|.+ ..++.... .....+.+.+++.. .... ..
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~-SRcq~i~~~~~~~~~~~~~L~~~~~-~~-- 207 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTIL-SRCRQFPMTVPAPEAAAAWLAAQGV-AD-- 207 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHH-hcCEEEEecCCCHHHHHHHHHHcCC-Ch--
Confidence 44588899997 566788888888877788877666655 44443321 11167778777651 1111 11
Q ss_pred HHHHHHHHHhCCChHHHH
Q 041923 376 ELSEKIINYAQGVPLALE 393 (529)
Q Consensus 376 ~~~~~i~~~~~G~PLal~ 393 (529)
...++..++|.|+...
T Consensus 208 --~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 208 --ADALLAEAGGAPLAAL 223 (342)
T ss_pred --HHHHHHHcCCCHHHHH
Confidence 2335778899997443
No 185
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.03 E-value=0.0013 Score=63.68 Aligned_cols=103 Identities=12% Similarity=0.133 Sum_probs=63.0
Q ss_pred hhHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcC-CCCC
Q 041923 216 SKVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRD-ENVI 293 (529)
Q Consensus 216 ~~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~-~~~~ 293 (529)
..++.|..++. ...++.|.|..|.||||++..+...+...-...+.+.+..+... ... .+..-. ....
T Consensus 67 ~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~--~~~--------~q~~v~~~~~~ 136 (264)
T cd01129 67 ENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI--PGI--------NQVQVNEKAGL 136 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC--CCc--------eEEEeCCcCCc
Confidence 34455556665 67799999999999999999998876442222333322222111 000 011101 1112
Q ss_pred CCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhcc
Q 041923 294 PDIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSL 328 (529)
Q Consensus 294 ~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~ 328 (529)
.....+...++..+=.++++++.+.+....++...
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa 171 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAA 171 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHH
Confidence 23677788888889999999999988776655543
No 186
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.02 E-value=0.011 Score=59.09 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=34.5
Q ss_pred ccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 211 LVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+||+...++++.+.+. ....|.|+|.+|+||+++|+.+.+.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4678888888777776 66779999999999999999887643
No 187
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.01 E-value=0.0044 Score=62.50 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=66.8
Q ss_pred hHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE-ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHH
Q 041923 220 EIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ-NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIE 297 (529)
Q Consensus 220 ~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~ 297 (529)
.+.+++. ....+.|+|+.|.||||++..+...+.......++.. +..+. .... ...+..+.........-..
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~-----~~~~-~~~~i~q~evg~~~~~~~~ 186 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY-----VHRN-KRSLINQREVGLDTLSFAN 186 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh-----hccC-ccceEEccccCCCCcCHHH
Confidence 3444444 6789999999999999999999887765544444443 11000 0000 0000000000001112256
Q ss_pred HHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 298 FNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 298 ~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
.++..|+..+=.|++|.+.+.+.....+... ..|..++.|...
T Consensus 187 ~l~~~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha 229 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHT 229 (343)
T ss_pred HHHHhhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcC
Confidence 6778888999999999999888776644442 245555555554
No 188
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0024 Score=67.51 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=52.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
....|.|.|..|+|||+||+++++.+...-...+-+.++ .......+..+++.+-. .+.+.+...
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C--s~l~~~~~e~iQk~l~~-------------vfse~~~~~ 494 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC--STLDGSSLEKIQKFLNN-------------VFSEALWYA 494 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec--hhccchhHHHHHHHHHH-------------HHHHHHhhC
Confidence 678899999999999999999999887553333333333 22223446666655533 234566778
Q ss_pred cEEEEEcCCC
Q 041923 307 KALIVLDDVT 316 (529)
Q Consensus 307 ~~LLVlDdv~ 316 (529)
|-++||||++
T Consensus 495 PSiIvLDdld 504 (952)
T KOG0735|consen 495 PSIIVLDDLD 504 (952)
T ss_pred CcEEEEcchh
Confidence 9999999994
No 189
>PHA00729 NTP-binding motif containing protein
Probab=96.99 E-value=0.0024 Score=59.49 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=23.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+...|+|+|.+|+|||+||..+++++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999999999864
No 190
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.98 E-value=0.017 Score=64.03 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=37.9
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++|+...++.+.+.+. ....|.|+|.+|+|||.+|+.+.+.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999998877665 66689999999999999999998754
No 191
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0063 Score=66.28 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=40.1
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
-++.+||+.|+.++.+.|. ...--.++|.+|+|||+++.-++.++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~ 217 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN 217 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc
Confidence 4679999999999999998 4445567899999999999999998654
No 192
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.97 E-value=0.012 Score=54.17 Aligned_cols=57 Identities=23% Similarity=0.300 Sum_probs=44.5
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHh-ccCcceEEEEe
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKIS-RNFEGSCFLQN 264 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~ 264 (529)
-...||-++-++.|.-.-. ..+-+.|.|+||+||||-+..+++.+- ..|...+.-.+
T Consensus 26 l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 3578999998888877665 788999999999999999999999754 34554444433
No 193
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.94 E-value=0.025 Score=49.82 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=62.8
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHH-----hcC-----CCCCCC---
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEV-----LRD-----ENVIPD--- 295 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-----~~~-----~~~~~~--- 295 (529)
.+|-|++-.|.||||+|...+-+...+-..+.++..+.... ..+-...++.+- .+ +.. ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 57889999999999999999998766655566655444321 123333333331 00 000 000000
Q ss_pred ----HHHHHHHhCC-CcEEEEEcCCC--------CHHHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 296 ----IEFNFTRLSR-RKALIVLDDVT--------CFRQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 296 ----~~~l~~~l~~-~~~LLVlDdv~--------~~~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
....++.+.. .-=|||||.+. +.+.+-.++... ..+..+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r---p~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK---PEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC---CCCCEEEEECCCC
Confidence 2233334433 44599999993 334444444443 3677999999984
No 194
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.93 E-value=0.0028 Score=59.88 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=33.9
Q ss_pred HHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 221 IESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 221 l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
|.+.|. ...++.|+|.+|+|||+||.+++.........++|+.
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 444554 5779999999999999999999998766655666665
No 195
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.92 E-value=0.0017 Score=58.86 Aligned_cols=37 Identities=30% Similarity=0.587 Sum_probs=31.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.+.+|.|.|++|+||||+|+.++..+...+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4668999999999999999999999887777666663
No 196
>PRK06696 uridine kinase; Validated
Probab=96.91 E-value=0.0014 Score=61.94 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=35.1
Q ss_pred ccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 213 GVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 213 GR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.|.+.+++|.+.+. ...+|+|.|.+|+||||||..++..+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35666777777664 57799999999999999999999987543
No 197
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0046 Score=61.63 Aligned_cols=90 Identities=19% Similarity=0.332 Sum_probs=57.6
Q ss_pred hHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-
Q 041923 217 KVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN- 291 (529)
Q Consensus 217 ~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~- 291 (529)
-+.++...|. ...++.|-|-||||||||..+++.++..+. .+.++.. .....++.-.. ..+.....
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-------EES~~QiklRA-~RL~~~~~~ 148 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-------EESLQQIKLRA-DRLGLPTNN 148 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-------CcCHHHHHHHH-HHhCCCccc
Confidence 3556666665 678999999999999999999999998776 5555541 12222221111 11211111
Q ss_pred ----CCCCHHHHHHHhC-CCcEEEEEcCC
Q 041923 292 ----VIPDIEFNFTRLS-RRKALIVLDDV 315 (529)
Q Consensus 292 ----~~~~~~~l~~~l~-~~~~LLVlDdv 315 (529)
...+.+.+.+.+. .++-|+|+|-+
T Consensus 149 l~l~aEt~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 149 LYLLAETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred eEEehhcCHHHHHHHHHhcCCCEEEEecc
Confidence 2223666666665 57899999998
No 198
>PRK10867 signal recognition particle protein; Provisional
Probab=96.87 E-value=0.034 Score=57.38 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+|.++|.+|+||||++..++..+...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 5789999999999999999999877655
No 199
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.86 E-value=0.0037 Score=58.77 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=34.1
Q ss_pred HhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 219 GEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 219 ~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..|...|. ...++.|+|.+|+|||+|+.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34455554 5789999999999999999999988765544555654
No 200
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.86 E-value=0.028 Score=60.48 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=39.8
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++|....++++.+.+. ....|.|+|.+|+|||++|+.+.+...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 5689999999999998876 566789999999999999999987543
No 201
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.82 E-value=0.0054 Score=58.33 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|+|.+|+|||+|+.+++.....+-..++|+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 6889999999999999999999876544444455554
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.021 Score=58.63 Aligned_cols=121 Identities=19% Similarity=0.131 Sum_probs=66.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
+...+.+.|++|+|||+||.+++. ...|+.+-.+. ...... ..-.+-...+ .......-+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS-pe~miG--~sEsaKc~~i-------------~k~F~DAYkS~ 598 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS-PEDMIG--LSESAKCAHI-------------KKIFEDAYKSP 598 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC-hHHccC--ccHHHHHHHH-------------HHHHHHhhcCc
Confidence 456788999999999999999986 45788555443 111110 0001111111 11122333455
Q ss_pred cEEEEEcCCCCH------------HHHHHHHhccCCCCC-C--cEEEEEeCcchhhhhcCCCcc--ceEeccCCCc
Q 041923 307 KALIVLDDVTCF------------RQIKFLIRSLDWFMP-E--SRIIITTRDQKVLKNGGVKEK--DIYEMKALEC 365 (529)
Q Consensus 307 ~~LLVlDdv~~~------------~~l~~l~~~~~~~~~-g--s~IliTtR~~~~~~~~~~~~~--~~~~l~~L~~ 365 (529)
--.||+||++.. ..++.|+-.+....+ | --|+-||....++..+++-.. ..+.|+.+..
T Consensus 599 lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred ceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 678999999532 234444444433333 2 335557777888887764311 4566666553
No 203
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.042 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+++++.|++|+||||++..++..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999988765
No 204
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.82 E-value=0.0018 Score=59.76 Aligned_cols=114 Identities=16% Similarity=0.230 Sum_probs=61.1
Q ss_pred hHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC
Q 041923 217 KVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD 295 (529)
Q Consensus 217 ~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 295 (529)
+.+.+...+. +.+++.|.|.+|.|||+++..+...+...- ..+.+.... ......+....... ...
T Consensus 6 Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT---------~~Aa~~L~~~~~~~---a~T 72 (196)
T PF13604_consen 6 QREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPT---------NKAAKELREKTGIE---AQT 72 (196)
T ss_dssp HHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESS---------HHHHHHHHHHHTS----EEE
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCc---------HHHHHHHHHhhCcc---hhh
Confidence 3444555555 668999999999999999999888766653 333332111 11222222222110 001
Q ss_pred HHHHHHHh----------CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcch
Q 041923 296 IEFNFTRL----------SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQK 345 (529)
Q Consensus 296 ~~~l~~~l----------~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~ 345 (529)
+..+.... ..++-+||+|++. +...+..++.... ..++++|+.--...
T Consensus 73 i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~Q 132 (196)
T PF13604_consen 73 IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQ 132 (196)
T ss_dssp HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTS
T ss_pred HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcch
Confidence 11111111 1234599999996 5667777777665 24778887765443
No 205
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.01 Score=55.49 Aligned_cols=116 Identities=23% Similarity=0.391 Sum_probs=67.6
Q ss_pred ccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcH
Q 041923 211 LVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGL 275 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 275 (529)
.=|=.+++++|++... .++-|.++|++|.|||-+|++++++- ..||+..++.
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirvigs-------- 245 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRVIGS-------- 245 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEeehhH--------
Confidence 4456677787777653 57789999999999999999999864 4566653322
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHhCC-CcEEEEEcCCC-------------CHHH---HHHHHhccCCCCCC--cE
Q 041923 276 ARLQQKLLSEVLRDENVIPDIEFNFTRLSR-RKALIVLDDVT-------------CFRQ---IKFLIRSLDWFMPE--SR 336 (529)
Q Consensus 276 ~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~-~~~LLVlDdv~-------------~~~~---l~~l~~~~~~~~~g--s~ 336 (529)
.+.+... ++.. ..+..+.+..+. |-|+|.||.++ +.+. .-.+...+..|.+. -+
T Consensus 246 -elvqkyv----gega--rmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 246 -ELVQKYV----GEGA--RMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred -HHHHHHh----hhhH--HHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 1111111 0000 002333344444 56888999883 1111 22345555555543 47
Q ss_pred EEEEeCcchh
Q 041923 337 IIITTRDQKV 346 (529)
Q Consensus 337 IliTtR~~~~ 346 (529)
|++.|-.+..
T Consensus 319 vlmatnrpdt 328 (435)
T KOG0729|consen 319 VLMATNRPDT 328 (435)
T ss_pred EEeecCCCCC
Confidence 8887765443
No 206
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.80 E-value=0.0072 Score=54.15 Aligned_cols=41 Identities=29% Similarity=0.380 Sum_probs=32.2
Q ss_pred ccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 211 LVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
+||....++++.+.+. ....|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 4678888888888776 6678889999999999999999873
No 207
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.80 E-value=0.0034 Score=61.76 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=39.2
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
++.|+=.......+...|...+.|.|.|.+|+|||++|+.++..+...|
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 4456666666777777777677899999999999999999999876543
No 208
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0049 Score=57.14 Aligned_cols=47 Identities=30% Similarity=0.440 Sum_probs=37.2
Q ss_pred cccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 210 HLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
..=|.+-..+++++... .++-|.++|++|.|||.||+++++.-...|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 45567777777777654 678999999999999999999998654443
No 209
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.76 E-value=0.0018 Score=56.72 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=29.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
+.+|.|+|.+|+||||||+++.+++........++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 458999999999999999999999987766566654
No 210
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.76 E-value=0.0051 Score=62.35 Aligned_cols=89 Identities=15% Similarity=0.271 Sum_probs=53.4
Q ss_pred HhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC---
Q 041923 219 GEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN--- 291 (529)
Q Consensus 219 ~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~--- 291 (529)
.+|.+.|. ...++.|.|.+|+|||||+.+++..+......++|+. .. .....+... ...+.....
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs-~E------Es~~qi~~R-a~rlg~~~~~l~ 140 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS-GE------ESPEQIKLR-ADRLGISTENLY 140 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE-CC------cCHHHHHHH-HHHcCCCcccEE
Confidence 44455554 5789999999999999999999988766544455554 21 122222222 122221111
Q ss_pred --CCCCHHHHHHHhC-CCcEEEEEcCC
Q 041923 292 --VIPDIEFNFTRLS-RRKALIVLDDV 315 (529)
Q Consensus 292 --~~~~~~~l~~~l~-~~~~LLVlDdv 315 (529)
.....+.+.+.+. .++-+||+|.+
T Consensus 141 l~~e~~le~I~~~i~~~~~~lVVIDSI 167 (372)
T cd01121 141 LLAETNLEDILASIEELKPDLVIIDSI 167 (372)
T ss_pred EEccCcHHHHHHHHHhcCCcEEEEcch
Confidence 1122555555554 36779999998
No 211
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.75 E-value=0.0032 Score=58.74 Aligned_cols=37 Identities=22% Similarity=0.349 Sum_probs=31.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|+|.+|+|||+|+.+++.........++|+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 5789999999999999999999988766655667765
No 212
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.085 Score=49.57 Aligned_cols=173 Identities=14% Similarity=0.188 Sum_probs=88.2
Q ss_pred HhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-CCCC-
Q 041923 219 GEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-VIPD- 295 (529)
Q Consensus 219 ~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~~~~- 295 (529)
..+..... +.+++.|+|.-|.|||.+.+.....+.++ .++.+. + .........+...+...+..... ....
T Consensus 41 ~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~-i---~~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 41 LMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVV-I---DKPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEE-e---cCcchhHHHHHHHHHHHhccCccchhHHH
Confidence 33333344 66799999999999999999555444322 222221 1 11134455566666655554222 1211
Q ss_pred HHH----HHHHh-CCCc-EEEEEcCCCC--HHHHH---HHHhccCCCCCCcEEEEEeCcc-------hhhhhcCCCccce
Q 041923 296 IEF----NFTRL-SRRK-ALIVLDDVTC--FRQIK---FLIRSLDWFMPESRIIITTRDQ-------KVLKNGGVKEKDI 357 (529)
Q Consensus 296 ~~~----l~~~l-~~~~-~LLVlDdv~~--~~~l~---~l~~~~~~~~~gs~IliTtR~~-------~~~~~~~~~~~~~ 357 (529)
... +.+.. ++++ +.+++|+.++ .+.++ .|...-......-+|+..-..+ ...........-.
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir 194 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIR 194 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEE
Confidence 222 22222 3455 9999999963 33333 3333322222222333332211 1111111111123
Q ss_pred EeccCCCc-------------CCCCCcccHHHHHHHHHHHhCCChHHHHHHHH
Q 041923 358 YEMKALEC-------------ENLPNEVGYQELSEKIINYAQGVPLALEILGC 397 (529)
Q Consensus 358 ~~l~~L~~-------------~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~ 397 (529)
|++.|++. ...+..--..+....|.....|.|.++..++.
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88999987 11222122245667788888999998887754
No 213
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.74 E-value=0.0062 Score=68.28 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=39.0
Q ss_pred CcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 209 NHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+|.+...+.|.+++. ..+.+.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 457788888888887664 456899999999999999999999875443
No 214
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.039 Score=55.39 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=27.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
+.++++|+|+.|+||||++..++..+..+-..+.++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lI 240 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFI 240 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 578999999999999999999998765443333333
No 215
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.73 E-value=0.0042 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+|.++|++|+||||+|++++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987653
No 216
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.72 E-value=0.0037 Score=63.05 Aligned_cols=103 Identities=14% Similarity=0.096 Sum_probs=60.1
Q ss_pred HHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcc--eEEEEecccccCCCCcHHHHHH--HHHHHHhcCCCCCCC
Q 041923 221 IESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEG--SCFLQNVRKESQSPGGLARLQQ--KLLSEVLRDENVIPD 295 (529)
Q Consensus 221 l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~--~ll~~~~~~~~~~~~ 295 (529)
+.+.+. ....|+|+|+.|+||||++..+...+....+. .++.. .+.. ...+..... ....+..........
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--Edpi--E~~~~~~~~~~~~v~Q~~v~~~~~~~ 201 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPI--EFVYDEIETISASVCQSEIPRHLNNF 201 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCc--eEeccccccccceeeeeeccccccCH
Confidence 344444 77899999999999999999999877544332 22221 1110 111111100 000010000011122
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhc
Q 041923 296 IEFNFTRLSRRKALIVLDDVTCFRQIKFLIRS 327 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~ 327 (529)
...++..|+..+-.+++..+.+.+..+..+..
T Consensus 202 ~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 202 AAGVRNALRRKPHAILVGEARDAETISAALEA 233 (358)
T ss_pred HHHHHHHhccCCCEEeeeeeCCHHHHHHHHHH
Confidence 56778888999999999999999888755544
No 217
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.035 Score=53.98 Aligned_cols=145 Identities=12% Similarity=0.059 Sum_probs=84.3
Q ss_pred HhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc-------------CcceEEEEecccccCCCCcHHHHHHHH
Q 041923 219 GEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN-------------FEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 219 ~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
++|...+. -.....++|+.|+||+++|..++..+-.. ++...++...... . .-.+
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-~-~I~i------- 77 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-R-LHSI------- 77 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC-C-cCcH-------
Confidence 44555555 35578899999999999999999865321 2222222111000 0 0011
Q ss_pred HHHHhcCCCCCCCHHHHHHHhC-----CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc-chhhhhcCCCc
Q 041923 283 LSEVLRDENVIPDIEFNFTRLS-----RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD-QKVLKNGGVKE 354 (529)
Q Consensus 283 l~~~~~~~~~~~~~~~l~~~l~-----~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~ 354 (529)
+.+..+.+.+. ++.=++|+|+++ +.+....|+..+....+++.+|++|.+ ..+++... ..
T Consensus 78 -----------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~-SR 145 (290)
T PRK05917 78 -----------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIR-SR 145 (290)
T ss_pred -----------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHH-hc
Confidence 11222333332 344588899997 556778888888777778877776666 34433321 11
Q ss_pred cceEeccCCCcCCCCCcccHHHHHHHHHHHhCCCh
Q 041923 355 KDIYEMKALECENLPNEVGYQELSEKIINYAQGVP 389 (529)
Q Consensus 355 ~~~~~l~~L~~~~~~~~~~~~~~~~~i~~~~~G~P 389 (529)
...+.+.++.....+ .+.+..++...+|.+
T Consensus 146 cq~~~~~~~~~~~i~-----~~~~~~l~~~~~g~~ 175 (290)
T PRK05917 146 SLSIHIPMEEKTLVS-----KEDIAYLIGYAQGKE 175 (290)
T ss_pred ceEEEccchhccCCC-----HHHHHHHHHHhCCCh
Confidence 166777777543222 355667788888866
No 218
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.70 E-value=0.044 Score=54.67 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+.++|+.|+|||++|..++..+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999875
No 219
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.70 E-value=0.047 Score=53.02 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=28.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..++++++|.+|+||||++..++..+...- ..+.+.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li 106 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLA 106 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence 457899999999999999999998876553 334443
No 220
>PRK04132 replication factor C small subunit; Provisional
Probab=96.70 E-value=0.045 Score=60.94 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=76.8
Q ss_pred EEe--cCcchHHHHHHHHHHHHh-ccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCCcEE
Q 041923 233 IWG--MGGIGKTTIARAVFNKIS-RNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRRKAL 309 (529)
Q Consensus 233 I~G--~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~~~L 309 (529)
+.| +.++||||+|..+++++- +.+...+.-.+... ..+... .+.+........+. -..+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd----~rgid~-IR~iIk~~a~~~~~----------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD----ERGINV-IREKVKEFARTKPI----------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC----cccHHH-HHHHHHHHHhcCCc----------CCCCCEE
Confidence 447 779999999999999863 33333344333332 123332 22332222111110 0124579
Q ss_pred EEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCcc-hhhhhcCCCccceEeccCCCcCC-----------CCCcccHH
Q 041923 310 IVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRDQ-KVLKNGGVKEKDIYEMKALECEN-----------LPNEVGYQ 375 (529)
Q Consensus 310 LVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~l~~L~~~~-----------~~~~~~~~ 375 (529)
+|||+++. ....+.|+..+......+++|+++.+. .+..... .....+++.+++... ... .-..
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr-SRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~i~~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ-SRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTE 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh-hhceEEeCCCCCHHHHHHHHHHHHHhcCC-CCCH
Confidence 99999984 456777777776656677777766653 2222211 112678888877410 000 1113
Q ss_pred HHHHHHHHHhCCChHH
Q 041923 376 ELSEKIINYAQGVPLA 391 (529)
Q Consensus 376 ~~~~~i~~~~~G~PLa 391 (529)
+....|++.++|.+..
T Consensus 712 e~L~~Ia~~s~GDlR~ 727 (846)
T PRK04132 712 EGLQAILYIAEGDMRR 727 (846)
T ss_pred HHHHHHHHHcCCCHHH
Confidence 4556667777776643
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.01 Score=54.63 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=26.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
++++.++|+.|+||||.+..++.++..+ ...+-+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~l 34 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVAL 34 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-ccccee
Confidence 3689999999999999999999987766 433333
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.015 Score=58.64 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+++++|++|+||||++..++.+....+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 577999999999999999999999865444
No 223
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.68 E-value=0.035 Score=59.04 Aligned_cols=127 Identities=17% Similarity=0.290 Sum_probs=81.4
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHh-----ccCcceEEEEecccccCCCCcH
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKIS-----RNFEGSCFLQNVRKESQSPGGL 275 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~~~ 275 (529)
+..+-+|+.|..+|...+. ....+-|+|.+|.|||+.+..|.+.+. ..-+...|+. +.... ....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-INgm~--l~~~ 471 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-INGLR--LASP 471 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Eccee--ecCH
Confidence 4557799999999999887 345788999999999999999999654 1223333332 11111 3446
Q ss_pred HHHHHHHHHHHhcCCCC-CCCHHHHHHHhC-----CCcEEEEEcCCCC-----HHHHHHHHhccCCCC-CCcEEEEE
Q 041923 276 ARLQQKLLSEVLRDENV-IPDIEFNFTRLS-----RRKALIVLDDVTC-----FRQIKFLIRSLDWFM-PESRIIIT 340 (529)
Q Consensus 276 ~~l~~~ll~~~~~~~~~-~~~~~~l~~~l~-----~~~~LLVlDdv~~-----~~~l~~l~~~~~~~~-~gs~IliT 340 (529)
.++...+...+.+.... ....+.+..+.. .+.+++++|+++. .+.+..+ +.|.. ++++++|-
T Consensus 472 ~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~---fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNI---FDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHH---hcCCcCCCCceEEE
Confidence 77777777776655442 223556666554 3578999999853 3334443 34433 57765543
No 224
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0019 Score=68.58 Aligned_cols=50 Identities=26% Similarity=0.491 Sum_probs=43.7
Q ss_pred CCcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 208 KNHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
+.+-+|.++--++|.++|. ..++++++|+||+|||+|++.+++-+...|-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 4556899999999999886 6789999999999999999999998877654
No 225
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.66 E-value=0.065 Score=55.08 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+|.++|.+|+||||++..++..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5789999999999999999999877654
No 226
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.63 E-value=0.021 Score=62.53 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred CcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..+.|.+...+++.+.+. -.+-|.|+|++|.|||++|+.++.+...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345566655555554432 1456999999999999999999987643
No 227
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.62 E-value=0.076 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+.++.++|.+|+||||++..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999998865
No 228
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.004 Score=58.99 Aligned_cols=48 Identities=35% Similarity=0.506 Sum_probs=39.8
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...=|-+.++++|.+... .++-|.++|.+|.|||-||++++++-+.-|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 345678999999998765 577899999999999999999998765444
No 229
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.60 E-value=0.0018 Score=54.91 Aligned_cols=22 Identities=45% Similarity=0.795 Sum_probs=20.6
Q ss_pred EEEEecCcchHHHHHHHHHHHH
Q 041923 231 VGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
|+|.|.+|+||||+|+++.+++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 230
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.007 Score=54.64 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=24.5
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
+.|.++|.||+||||+|+++++.++++-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 5788999999999999999999776653
No 231
>PRK07667 uridine kinase; Provisional
Probab=96.59 E-value=0.004 Score=57.28 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=29.0
Q ss_pred HhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 219 GEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 219 ~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+.+.+. ...+|+|.|.+|+||||||..+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34444444 55789999999999999999999987654
No 232
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.57 E-value=0.017 Score=54.53 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=29.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC------cceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF------EGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f------~~~~~~~ 263 (529)
...++.|+|.+|+|||+|+.+++....... ..++|+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 678999999999999999999988765444 4455554
No 233
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.027 Score=52.64 Aligned_cols=45 Identities=24% Similarity=0.401 Sum_probs=36.9
Q ss_pred CcccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 209 NHLVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+..=|-++++++|.+.+- .++-|.++|++|.|||-+|+..+.+-.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 456678888888888753 567899999999999999999987643
No 234
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.57 E-value=0.0052 Score=59.46 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=21.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.|.|+|.||+||||+|+++...+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~ 28 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEK 28 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhc
Confidence 578999999999999999999987664
No 235
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.56 E-value=0.037 Score=58.72 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=71.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc-----CcceEEEEecccccC---CCCcH------------HHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN-----FEGSCFLQNVRKESQ---SPGGL------------ARLQQKLLSEV 286 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~---~~~~~------------~~l~~~ll~~~ 286 (529)
....|+|.|+.|+|||||.+.+....... ....+-+..+.+... ....+ ..-.+..+..+
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 78899999999999999999997654332 011111111111100 00001 22223333333
Q ss_pred hcCCCCC-------CC----HHHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhcCC
Q 041923 287 LRDENVI-------PD----IEFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNGGV 352 (529)
Q Consensus 287 ~~~~~~~-------~~----~~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~ 352 (529)
+-..... +. .-.+...+-.++-+||||.-. |.+.++.|...+..+ +| .||+.|.++..+....
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va- 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA- 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-
Confidence 2211111 00 333455556788999999774 445555555444433 34 4888888888877653
Q ss_pred CccceEeccC
Q 041923 353 KEKDIYEMKA 362 (529)
Q Consensus 353 ~~~~~~~l~~ 362 (529)
. ..+.+.+
T Consensus 504 ~--~i~~~~~ 511 (530)
T COG0488 504 T--RIWLVED 511 (530)
T ss_pred c--eEEEEcC
Confidence 3 6777776
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.56 E-value=0.008 Score=61.92 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=32.9
Q ss_pred chhHHhHHHHhc---------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 215 ESKVGEIESLLA---------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 215 ~~~l~~l~~~L~---------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+.+.++..||. +.+++.|+|++|+||||-++.++..+.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 356777888876 678999999999999999999998653
No 237
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.56 E-value=0.038 Score=60.83 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=36.7
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.++|....+.++.+... ....|.|+|.+|+||+++|+.+.+..
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 3568898888888777665 55668999999999999999997653
No 238
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.55 E-value=0.011 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 678999999999999999998853
No 239
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.55 E-value=0.039 Score=53.68 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=29.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 263 (529)
...++.|.|.+|+|||+|+.+++...... -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 67799999999999999999999887555 33444543
No 240
>PRK08118 topology modulation protein; Reviewed
Probab=96.54 E-value=0.002 Score=57.71 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.8
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+.|.|+|++|+||||||+.+++.+.-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999997643
No 241
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.019 Score=51.68 Aligned_cols=117 Identities=17% Similarity=0.255 Sum_probs=60.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCC---------CC---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENV---------IP--- 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---------~~--- 294 (529)
...+++|.|..|.|||||.+.++..... ..+.+++.... ... .......+.+ ..+...... .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~-~~~--~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVD-LRD--LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEE-hhh--cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHH
Confidence 7889999999999999999999875432 33444443211 000 0000100000 000000000 11
Q ss_pred -CHHHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhh
Q 041923 295 -DIEFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLK 348 (529)
Q Consensus 295 -~~~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~ 348 (529)
..-.+...+-.++-+|+||+-. |....+.+...+.....+..||++|.+.....
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 1233555666788899999984 33333333322222223567888888866654
No 242
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.53 E-value=0.021 Score=51.77 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=60.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh---cC------------CC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL---RD------------EN 291 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~---~~------------~~ 291 (529)
...+++|.|..|.|||||++.++-.... ....+++... .+......+...+. .. ..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~--------~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~ 97 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGV--------PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGR 97 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCE--------EHHHHHHHHHhhEEEEccCCeeecccHHHhhcc
Confidence 6789999999999999999999875432 2333443211 01100000000000 00 00
Q ss_pred CCCC----HHHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhh
Q 041923 292 VIPD----IEFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLK 348 (529)
Q Consensus 292 ~~~~----~~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~ 348 (529)
..+. .-.+...+-.++=+|++|+.. |....+.+...+.....+..||++|.+.....
T Consensus 98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 1111 334555566788899999884 33333333222221123667888888876654
No 243
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.53 E-value=0.0024 Score=65.94 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=42.6
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++||++.++.+...+.....|.|.|++|+|||+||+.++.....
T Consensus 19 ~~~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHHHHHHHhcc
Confidence 56799999999999999998889999999999999999999987644
No 244
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0095 Score=57.12 Aligned_cols=102 Identities=23% Similarity=0.254 Sum_probs=58.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
.+..++|||.+|.|||-||+.++..+.-+|-..+- ..-.+.-......++++.... .-...
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s---s~lv~kyiGEsaRlIRemf~y----------------A~~~~ 225 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS---SALVDKYIGESARLIRDMFRY----------------AREVI 225 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH---hhhhhhhcccHHHHHHHHHHH----------------HhhhC
Confidence 56789999999999999999999987655431110 000011012233333333322 22356
Q ss_pred cEEEEEcCCC-------------CHHH---HHHHHhccCCCC--CCcEEEEEeCcchhh
Q 041923 307 KALIVLDDVT-------------CFRQ---IKFLIRSLDWFM--PESRIIITTRDQKVL 347 (529)
Q Consensus 307 ~~LLVlDdv~-------------~~~~---l~~l~~~~~~~~--~gs~IliTtR~~~~~ 347 (529)
+|.|.+|+++ +.+. +-.|+.....+. ...++|+||-++..+
T Consensus 226 pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtL 284 (388)
T KOG0651|consen 226 PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTL 284 (388)
T ss_pred ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCcccc
Confidence 7999999994 1121 223333333222 456899999876554
No 245
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.50 E-value=0.021 Score=51.17 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=42.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC---CCCCHHHHHHHhCC-
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN---VIPDIEFNFTRLSR- 305 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~---~~~~~~~l~~~l~~- 305 (529)
++.|.|.+|+|||++|.+++.. .....+++.... ..+ .++.+.+......... .......+.+.+..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~-----~~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAE-----AFD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC-----cCC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 3689999999999999999876 223455553222 112 2334443332222222 22233445555532
Q ss_pred -CcEEEEEcCC
Q 041923 306 -RKALIVLDDV 315 (529)
Q Consensus 306 -~~~LLVlDdv 315 (529)
+.-.+++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2447999998
No 246
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.095 Score=52.68 Aligned_cols=152 Identities=14% Similarity=0.243 Sum_probs=75.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH-------hccCcceEEEE--ecccccCCCCcHHH-HHHHH----------HHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI-------SRNFEGSCFLQ--NVRKESQSPGGLAR-LQQKL----------LSEV 286 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~-------~~~f~~~~~~~--~~~~~~~~~~~~~~-l~~~l----------l~~~ 286 (529)
-...|+|+|+.|+|||||.+.+.-.+ +.+....+=|. ...+.-........ +++.+ +...
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~f 691 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTF 691 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhh
Confidence 45679999999999999999987643 22222222221 11111111112222 22111 1111
Q ss_pred hcCC--CC--CCC-------HHHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhcCC
Q 041923 287 LRDE--NV--IPD-------IEFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNGGV 352 (529)
Q Consensus 287 ~~~~--~~--~~~-------~~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~ 352 (529)
+... .. +.. ...+.+...+.+=+||||.-. +.+.+++|...+..+. |. ||+.|.+..+....++
T Consensus 692 GL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-Gg-Vi~VsHDeRLi~eT~C 769 (807)
T KOG0066|consen 692 GLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-GG-VIMVSHDERLIVETDC 769 (807)
T ss_pred hhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-Cc-EEEEecccceeeecCc
Confidence 1110 00 110 334445555678889999763 5677888877766553 43 5555555544333222
Q ss_pred CccceEeccCCCcCCCCCcccHHHHHHHHHHHh
Q 041923 353 KEKDIYEMKALECENLPNEVGYQELSEKIINYA 385 (529)
Q Consensus 353 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~i~~~~ 385 (529)
..|-++.-....+. -++++.-+++++.+
T Consensus 770 ---~LwVvE~Q~i~eId--GdFeDYkkEVLdaL 797 (807)
T KOG0066|consen 770 ---NLWVVENQGIDEID--GDFEDYKKEVLDAL 797 (807)
T ss_pred ---eEEEEccCChhhcc--ccHHHHHHHHHHHH
Confidence 34444433322222 25667777766544
No 247
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.44 E-value=0.021 Score=51.01 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=61.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCC---C----
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIP---D---- 295 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~---~---- 295 (529)
...|-|++-.|.||||.|...+.+...+-..++++..+.... ..+-...+..+.-.+..... ..+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~--~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW--PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc--ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 357888888999999999999988766544454444333321 12222333322101000000 000 0
Q ss_pred ---HHHHHHHhCC-CcEEEEEcCCC--------CHHHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 296 ---IEFNFTRLSR-RKALIVLDDVT--------CFRQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 296 ---~~~l~~~l~~-~~~LLVlDdv~--------~~~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
.+..++.+.. .-=|||||.+. +.+.+-.++... .++..||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r---p~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER---PGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC---CCCCEEEEECCCC
Confidence 2333444444 34599999983 344444444443 4677999999984
No 248
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.44 E-value=0.016 Score=53.37 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=59.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc----CcceEEEEecccccC-CCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN----FEGSCFLQNVRKESQ-SPGGLARLQQKLLSEVLRDENVIPDIEFNFTR 302 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~-~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~ 302 (529)
.--..|.|+||+|||||.+.+++-++.. .+..+-+.+.+..-. ...+..+. .+...+.-.. ..+..+-+...
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~--~~g~R~dVld-~cpk~~gmmma 213 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQH--GRGRRMDVLD-PCPKAEGMMMA 213 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchh--hhhhhhhhcc-cchHHHHHHHH
Confidence 3347899999999999999999876654 334444443322111 00011111 1111111000 11112222222
Q ss_pred h-CCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 303 L-SRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 303 l-~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
. ...+=++|+|.+-..++..+++..+ ..|.+++.|..-
T Consensus 214 Irsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG 252 (308)
T COG3854 214 IRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHG 252 (308)
T ss_pred HHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecc
Confidence 2 3467899999998777776666665 378887777653
No 249
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.43 E-value=0.011 Score=52.91 Aligned_cols=113 Identities=17% Similarity=0.153 Sum_probs=59.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEe------cccccCCCCcHHHHHHHHHHHHhcCCCCCCC----H
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQN------VRKESQSPGGLARLQQKLLSEVLRDENVIPD----I 296 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~------~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~----~ 296 (529)
....++|.|..|.|||||++.++...... ...+++.. +.+... .. ...+...+... .....+. .
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~-~~-~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPY-LP-LGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCc-cc-cccHHHHhhcc---CCCCCCHHHHHH
Confidence 67899999999999999999998754322 23333221 111110 00 01122222110 1111121 4
Q ss_pred HHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhh
Q 041923 297 EFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVL 347 (529)
Q Consensus 297 ~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~ 347 (529)
-.+...+-.++=++++|+-. |....+.+...+... +..||++|.+....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 44556666788889999873 333333333332222 35677777776543
No 250
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.43 E-value=0.011 Score=51.43 Aligned_cols=104 Identities=20% Similarity=0.216 Sum_probs=56.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
...+++|.|..|.|||||++.++..... ....+++........... +.. .....-.+...+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~~~-lS~--------------G~~~rv~laral~~~ 88 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYFEQ-LSG--------------GEKMRLALAKLLLEN 88 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEEcc-CCH--------------HHHHHHHHHHHHhcC
Confidence 6789999999999999999999865432 234444432111100000 000 000122345556667
Q ss_pred cEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhh
Q 041923 307 KALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLK 348 (529)
Q Consensus 307 ~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~ 348 (529)
+-++++|+.. |....+.+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7899999884 333333333332222 246788887755443
No 251
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.42 E-value=0.0084 Score=57.00 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++.|+|.+|+|||+|+.+++...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 67899999999999999999998654
No 252
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.42 E-value=0.073 Score=56.89 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=36.2
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.+.++|....++++.+.+. ....|.|+|..|+||+.||+.+..
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHH
Confidence 4679999998888887765 566789999999999999999654
No 253
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.41 E-value=0.009 Score=63.52 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=45.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHh--C
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRL--S 304 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l--~ 304 (529)
..++..++|++|.||||||.-++++.. | .+.-.++.. ......+-..+...+.... .+ .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--Y--sVvEINASD----eRt~~~v~~kI~~avq~~s-----------~l~ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--Y--SVVEINASD----ERTAPMVKEKIENAVQNHS-----------VLDAD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--c--eEEEecccc----cccHHHHHHHHHHHHhhcc-----------ccccC
Confidence 678999999999999999999997632 2 222223322 2333444444444333221 22 2
Q ss_pred CCcEEEEEcCCCC
Q 041923 305 RRKALIVLDDVTC 317 (529)
Q Consensus 305 ~~~~LLVlDdv~~ 317 (529)
+++..||+|.++.
T Consensus 386 srP~CLViDEIDG 398 (877)
T KOG1969|consen 386 SRPVCLVIDEIDG 398 (877)
T ss_pred CCcceEEEecccC
Confidence 6889999999974
No 254
>PHA02244 ATPase-like protein
Probab=96.40 E-value=0.012 Score=58.78 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=35.0
Q ss_pred CCcccccchhHHh----HHHHhccCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGE----IESLLAAAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~----l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+..|+|....+.. +..++.....|.|+|++|+|||+||+.+++....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567887665543 3344446667889999999999999999987543
No 255
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.40 E-value=0.014 Score=53.05 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=63.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHH------HHHHHHHHhcCC------CCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARL------QQKLLSEVLRDE------NVIP 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~~ll~~~~~~~------~~~~ 294 (529)
...+++|.|..|.|||||++.++.... ...+.+++.... .. ....... ..+++..+.-.. ...+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~-~~--~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKD-LA--SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEE-CC--cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 678999999999999999999986543 234455553211 11 0111111 111222221111 0111
Q ss_pred C----HHHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCC-CC-CcEEEEEeCcchhh
Q 041923 295 D----IEFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWF-MP-ESRIIITTRDQKVL 347 (529)
Q Consensus 295 ~----~~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~-~~-gs~IliTtR~~~~~ 347 (529)
. .-.+...+-..+-++++|+.. |.+..+.+...+... .. +..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1 344556667788899999984 333333333322211 12 56788888876554
No 256
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.40 E-value=0.0031 Score=58.11 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=23.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+|+|.|.+|+||||||+.+...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988754
No 257
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.39 E-value=0.019 Score=51.37 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHhCCCcEEEEEcCC----CCHHHHH--HHHhccCCCCCCcEEEEEeCcchhhhhcC
Q 041923 296 IEFNFTRLSRRKALIVLDDV----TCFRQIK--FLIRSLDWFMPESRIIITTRDQKVLKNGG 351 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv----~~~~~l~--~l~~~~~~~~~gs~IliTtR~~~~~~~~~ 351 (529)
...+.+.+-++|-+|+-|.- +....|+ .++..++ ..|+.||++|.+..+...+.
T Consensus 145 RvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 145 RVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 45567777889999999965 3222332 2233332 46899999999988876653
No 258
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.37 E-value=0.012 Score=65.63 Aligned_cols=48 Identities=25% Similarity=0.446 Sum_probs=40.2
Q ss_pred CCcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+...+|.++..++|.++|. ...+++++|++|+||||+++.++..+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~ 376 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK 376 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4568899988888888776 46789999999999999999999876544
No 259
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.062 Score=56.81 Aligned_cols=47 Identities=30% Similarity=0.406 Sum_probs=36.2
Q ss_pred ccccchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 211 LVGVESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
.=|.++...+|.+... ..+-|.++|+||.|||++|+.+++...-.|-
T Consensus 436 IGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 436 IGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred ccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 3446666666665443 6789999999999999999999998766654
No 260
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.029 Score=58.59 Aligned_cols=100 Identities=25% Similarity=0.324 Sum_probs=57.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHH-HHHHhCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEF-NFTRLSR 305 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~-l~~~l~~ 305 (529)
...-|.+||++|.|||-||++++++-.-+|-. +.+ + +|+.. ..++.. ..+.. .++.-..
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFis------VKG----P----ELlNk----YVGESE--rAVR~vFqRAR~s 603 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFIS------VKG----P----ELLNK----YVGESE--RAVRQVFQRARAS 603 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEe------ecC----H----HHHHH----HhhhHH--HHHHHHHHHhhcC
Confidence 45679999999999999999999987665531 111 1 11111 111100 00222 2333346
Q ss_pred CcEEEEEcCCCC-------------HHHHHHHHhccCCCC--CCcEEEEEeCcchh
Q 041923 306 RKALIVLDDVTC-------------FRQIKFLIRSLDWFM--PESRIIITTRDQKV 346 (529)
Q Consensus 306 ~~~LLVlDdv~~-------------~~~l~~l~~~~~~~~--~gs~IliTtR~~~~ 346 (529)
.+|+|.||.++. ...+..|+-.+.-.. .|.-||-.|-.+++
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDi 659 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDI 659 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcc
Confidence 899999999942 233566666654332 35556655654444
No 261
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.063 Score=54.66 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..++|.++|..|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998765
No 262
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.33 E-value=0.0039 Score=65.45 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=41.3
Q ss_pred CCcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...++|.++.+++|.+.|. ..+++.++|++|+|||+||+.+++-+..
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 3468999999999999883 6789999999999999999999986544
No 263
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.092 Score=57.12 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=34.4
Q ss_pred CCcccccchhHHhHHH---Hhc-----------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIES---LLA-----------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~---~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++.|-++..++|.+ .|. -++-|.|+|++|.|||-||++++-+-
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc
Confidence 3567787765555555 443 46789999999999999999999753
No 264
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.31 E-value=0.018 Score=60.20 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=53.8
Q ss_pred HHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC--
Q 041923 218 VGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-- 291 (529)
Q Consensus 218 l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-- 291 (529)
+..|...|. ...++.|.|.+|+|||||+.+++.....+-..++|+. .. .....+..... .+.-...
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs-~E------Es~~qi~~ra~-rlg~~~~~l 151 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS-GE------ESLQQIKMRAI-RLGLPEPNL 151 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-Cc------CCHHHHHHHHH-HcCCChHHe
Confidence 455666664 6789999999999999999999988765544455554 21 12222222211 1111100
Q ss_pred ---CCCCHHHHHHHhCC-CcEEEEEcCC
Q 041923 292 ---VIPDIEFNFTRLSR-RKALIVLDDV 315 (529)
Q Consensus 292 ---~~~~~~~l~~~l~~-~~~LLVlDdv 315 (529)
.......+.+.+.. +.-++|+|.+
T Consensus 152 ~~~~e~~~~~I~~~i~~~~~~~vVIDSI 179 (454)
T TIGR00416 152 YVLSETNWEQICANIEEENPQACVIDSI 179 (454)
T ss_pred EEcCCCCHHHHHHHHHhcCCcEEEEecc
Confidence 11235555555543 5678999988
No 265
>PRK07261 topology modulation protein; Provisional
Probab=96.31 E-value=0.0033 Score=56.61 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|+|+|++|+||||||+.++...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 266
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.28 E-value=0.018 Score=54.66 Aligned_cols=122 Identities=20% Similarity=0.176 Sum_probs=69.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-------CCCC----
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-------VIPD---- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-------~~~~---- 295 (529)
....++|+|.+|.|||||++.+..-.... .+.+++....-.........+...+++...+.... ..+.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 78899999999999999999998754433 33444432111110012233444455555442221 1111
Q ss_pred HHHHHHHhCCCcEEEEEcCCCCH------HHHHHHHhccCCCCCCcEEEEEeCcchhhhhc
Q 041923 296 IEFNFTRLSRRKALIVLDDVTCF------RQIKFLIRSLDWFMPESRIIITTRDQKVLKNG 350 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv~~~------~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 350 (529)
.-.+.+.|.-++-|+|.|...+. .++-.|+..+.. ..|...|+.|.+-.+....
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 45567778889999999987421 233333333221 1355677777776555543
No 267
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.28 E-value=0.036 Score=49.89 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=23.3
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999887665
No 268
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.28 E-value=0.028 Score=63.59 Aligned_cols=114 Identities=20% Similarity=0.220 Sum_probs=63.5
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccC----cceEEEEecccc-cCCCCcHH-HHHHHHHHHHhcCCCCCCCHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNF----EGSCFLQNVRKE-SQSPGGLA-RLQQKLLSEVLRDENVIPDIEFNFT 301 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f----~~~~~~~~~~~~-~~~~~~~~-~l~~~ll~~~~~~~~~~~~~~~l~~ 301 (529)
..-+.|.|.+|.||||+...++-....+. +..+++. +... ........ .+...+...+..............+
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e 300 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQE 300 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHH
Confidence 34789999999999999999998654443 1222221 1100 00001111 2222222222222222222333467
Q ss_pred HhCCCcEEEEEcCCCCHHH---------HHHHHhccCCCCCCcEEEEEeCcchh
Q 041923 302 RLSRRKALIVLDDVTCFRQ---------IKFLIRSLDWFMPESRIIITTRDQKV 346 (529)
Q Consensus 302 ~l~~~~~LLVlDdv~~~~~---------l~~l~~~~~~~~~gs~IliTtR~~~~ 346 (529)
.+...++++++|.++.... +..+.+.. +.+++|+|+|....
T Consensus 301 ~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~----~~~~~iltcR~~~~ 350 (824)
T COG5635 301 LLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEY----PDAQVLLTCRPDTY 350 (824)
T ss_pred HHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhc----cCCeEEEEeccchh
Confidence 8889999999999964321 33333332 58899999987433
No 269
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.27 E-value=0.0028 Score=52.21 Aligned_cols=26 Identities=31% Similarity=0.622 Sum_probs=22.4
Q ss_pred EEEEecCcchHHHHHHHHHHHHhccC
Q 041923 231 VGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
|.|+|.+|+|||+||..++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999998776543
No 270
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.27 E-value=0.028 Score=55.28 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=67.6
Q ss_pred ccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHH---HhccCcceEEEEecccccCC----CCc----HHH
Q 041923 211 LVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNK---ISRNFEGSCFLQNVRKESQS----PGG----LAR 277 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~----~~~----~~~ 277 (529)
.-+|..+-.--.++|. ....|.+.|.+|.|||-||.+..-. -+..|...+.....-..... +.. +..
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 4455555554444444 8999999999999999998876542 23345544443222111100 111 111
Q ss_pred HHHHH---HHHHhcCCCCCCCHHHHHHH-------------hCC---CcEEEEEcCCCC--HHHHHHHHhccCCCCCCcE
Q 041923 278 LQQKL---LSEVLRDENVIPDIEFNFTR-------------LSR---RKALIVLDDVTC--FRQIKFLIRSLDWFMPESR 336 (529)
Q Consensus 278 l~~~l---l~~~~~~~~~~~~~~~l~~~-------------l~~---~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~ 336 (529)
..+.+ +..+....... ...+... +++ .+-++|+|.+.+ +.++..++... |.|++
T Consensus 306 Wmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~---G~GsK 380 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRA---GEGSK 380 (436)
T ss_pred hHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhc---cCCCE
Confidence 11111 22222211111 1112211 222 357999999964 56777776654 79999
Q ss_pred EEEEeC
Q 041923 337 IIITTR 342 (529)
Q Consensus 337 IliTtR 342 (529)
|+.|.-
T Consensus 381 IVl~gd 386 (436)
T COG1875 381 IVLTGD 386 (436)
T ss_pred EEEcCC
Confidence 998865
No 271
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.27 E-value=0.021 Score=59.55 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=53.9
Q ss_pred HHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC--
Q 041923 218 VGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-- 291 (529)
Q Consensus 218 l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-- 291 (529)
+.+|.+.|. ...++.|.|.+|+|||||+.+++.....+-..++|+. .. .....+... ...+.....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs-~E------es~~qi~~r-a~rlg~~~~~l 137 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS-GE------ESASQIKLR-AERLGLPSDNL 137 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-cc------ccHHHHHHH-HHHcCCChhcE
Confidence 445555554 5779999999999999999999998764433455554 21 223333222 122211110
Q ss_pred ---CCCCHHHHHHHhC-CCcEEEEEcCCC
Q 041923 292 ---VIPDIEFNFTRLS-RRKALIVLDDVT 316 (529)
Q Consensus 292 ---~~~~~~~l~~~l~-~~~~LLVlDdv~ 316 (529)
.......+.+.+. .++-++|+|.+.
T Consensus 138 ~~~~e~~l~~i~~~i~~~~~~lVVIDSIq 166 (446)
T PRK11823 138 YLLAETNLEAILATIEEEKPDLVVIDSIQ 166 (446)
T ss_pred EEeCCCCHHHHHHHHHhhCCCEEEEechh
Confidence 1123555555554 356789999983
No 272
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=96.26 E-value=0.02 Score=59.23 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=56.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|.+|+|||+|+..++.....+.+..+.+..+++. ......+.+.++..-..... ..+.
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER---~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~ 219 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVLDKTALVFGQMNEPPGARL 219 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999988776655545555444332 34556666666543221111 0111
Q ss_pred -----HHHHHHHh---CCCcEEEEEcCCCC
Q 041923 296 -----IEFNFTRL---SRRKALIVLDDVTC 317 (529)
Q Consensus 296 -----~~~l~~~l---~~~~~LLVlDdv~~ 317 (529)
...+.+++ +++++||++|++..
T Consensus 220 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 220 RVALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 23344444 67899999999953
No 273
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.013 Score=61.25 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...+++|+|.+|+||||++..++..+..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999999876554
No 274
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.26 E-value=0.014 Score=64.84 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=82.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH-HhccCcceEEEEec--------ccccCCCCcHHHHHHHHHHHHhcCCCCCCCHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK-ISRNFEGSCFLQNV--------RKESQSPGGLARLQQKLLSEVLRDENVIPDIE 297 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~-~~~~f~~~~~~~~~--------~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~ 297 (529)
+.+.++|+|+.|.|||||.+.+.-. +..+ .++++... ........+-..+... ++.+. ....
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~-LStfS------~~m~ 391 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQ--SGIPIPANEHSEIPYFEEIFADIGDEQSIEQN-LSTFS------GHMK 391 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHH--hCCCccCCccccccchhheeeecChHhHHhhh-hhHHH------HHHH
Confidence 3479999999999999999998764 1111 11111100 0000000000000000 00000 0011
Q ss_pred HHHHHhC--CCcEEEEEcCCC---CHHHHHH----HHhccCCCCCCcEEEEEeCcchhhhhcCCC-ccce----EeccCC
Q 041923 298 FNFTRLS--RRKALIVLDDVT---CFRQIKF----LIRSLDWFMPESRIIITTRDQKVLKNGGVK-EKDI----YEMKAL 363 (529)
Q Consensus 298 ~l~~~l~--~~~~LLVlDdv~---~~~~l~~----l~~~~~~~~~gs~IliTtR~~~~~~~~~~~-~~~~----~~l~~L 363 (529)
.+...+. ..+-|++||... |+..... ++..+. ..|+.+|+||....+....... .... +....+
T Consensus 392 ~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l 469 (771)
T TIGR01069 392 NISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETL 469 (771)
T ss_pred HHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCC
Confidence 2222222 478999999984 3433332 233322 2578899999987653321111 0011 111111
Q ss_pred Cc-----CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041923 364 EC-----ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINEL 414 (529)
Q Consensus 364 ~~-----~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~l 414 (529)
.. ...+. ...+-+|++++ |+|-.+..-|..+...........++.+
T Consensus 470 ~p~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L 520 (771)
T TIGR01069 470 SPTYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKL 520 (771)
T ss_pred ceEEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11 12222 34566676665 7787777777777654444455555444
No 275
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.25 E-value=0.011 Score=59.61 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=59.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
.++-+=|||..|.|||.|+-.+++.+...-...+ .+......+-..+.........+..+.+.+.++
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~-------------HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~ 127 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRV-------------HFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE 127 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccc-------------cccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 4677899999999999999999987643211111 112222222222222122223366677778888
Q ss_pred cEEEEEcCCC--CH---HHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 307 KALIVLDDVT--CF---RQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 307 ~~LLVlDdv~--~~---~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
-.||.||.+. |. .-+..|+..+- ..|. +||+|.|
T Consensus 128 ~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN 166 (362)
T PF03969_consen 128 SRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSN 166 (362)
T ss_pred CCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCC
Confidence 8899999874 33 33555555442 3454 6666655
No 276
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.24 E-value=0.0031 Score=52.88 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=20.4
Q ss_pred EEEEecCcchHHHHHHHHHHHHhccCcc
Q 041923 231 VGIWGMGGIGKTTIARAVFNKISRNFEG 258 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 258 (529)
|.|+|.+|+|||++|+.++..+...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6899999999999999999988777653
No 277
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.004 Score=65.93 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=43.5
Q ss_pred CCcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 208 KNHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
+..-+|+++--+++.+++. ..++++++|++|+|||++|+.++.-+...|.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4556899999999999886 7899999999999999999999998877654
No 278
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.23 E-value=0.0041 Score=60.58 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=68.0
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
+.+.-.....+.+.++|. ....|.|.|..|+||||++..+...+...-...+.+.+..+........ .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~--------~ 175 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQ--------I 175 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSE--------E
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccce--------E
Confidence 334444444455666655 5899999999999999999999987655512233333222211100000 0
Q ss_pred HHhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEE-EEEeC
Q 041923 285 EVLRDENVIPDIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRI-IITTR 342 (529)
Q Consensus 285 ~~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~I-liTtR 342 (529)
.+..........+.+...|+..+=.++++.+.+.+....+... ..|..+ +-|..
T Consensus 176 ~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~H 230 (270)
T PF00437_consen 176 QIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLH 230 (270)
T ss_dssp EEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE
T ss_pred EEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeee
Confidence 0000011222266777888888889999999988887774333 256666 45544
No 279
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.23 E-value=0.012 Score=54.77 Aligned_cols=84 Identities=15% Similarity=0.293 Sum_probs=50.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|.+|+|||+|+.++++...... .++.. +.+. .....++.+.+...-..+.. ..+.
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~--~V~~~-iGer---~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~ 87 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQDADV--VVYAL-IGER---GREVTEFIEELKGEGALERTVVVAATSDEPPAARY 87 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHCTTTE--EEEEE-ESEC---HHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcccccc--eeeee-cccc---chhHHHHHHHHhhcccccccccccccchhhHHHHh
Confidence 678899999999999999999998875332 23333 2221 34566666666443111110 0111
Q ss_pred -----HHHHHHHh--CCCcEEEEEcCCC
Q 041923 296 -----IEFNFTRL--SRRKALIVLDDVT 316 (529)
Q Consensus 296 -----~~~l~~~l--~~~~~LLVlDdv~ 316 (529)
.-.+.+++ +++++|+++||+.
T Consensus 88 ~~~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 88 RAPYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hhhccchhhhHHHhhcCCceeehhhhhH
Confidence 11122222 6899999999994
No 280
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.21 E-value=0.0042 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 281
>PRK08233 hypothetical protein; Provisional
Probab=96.21 E-value=0.0036 Score=56.83 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 282
>PRK06762 hypothetical protein; Provisional
Probab=96.20 E-value=0.0041 Score=55.66 Aligned_cols=25 Identities=40% Similarity=0.595 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+.+|+|+|++|+||||+|+.+++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 283
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.051 Score=50.53 Aligned_cols=42 Identities=31% Similarity=0.559 Sum_probs=34.1
Q ss_pred cccc-cchhHHhHHHHhc---------------cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 210 HLVG-VESKVGEIESLLA---------------AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 210 ~fvG-R~~~l~~l~~~L~---------------~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
.+|| -+.++++|.+.+. .++-+.++|++|.|||-||+.+++.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 4555 4777788777654 6788999999999999999999974
No 284
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.16 E-value=0.0053 Score=54.82 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=60.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
....++|.|..|.|||||.+.++-... .....+++... ... ........+.-......-.......-.+...+-..
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~-~~~--~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGK-EVS--FASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCE-ECC--cCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 788999999999999999999986432 23444554321 111 11111111100000000000001133455566677
Q ss_pred cEEEEEcCCC---CHHHHHHHHhccCCC-CCCcEEEEEeCcchhhh
Q 041923 307 KALIVLDDVT---CFRQIKFLIRSLDWF-MPESRIIITTRDQKVLK 348 (529)
Q Consensus 307 ~~LLVlDdv~---~~~~l~~l~~~~~~~-~~gs~IliTtR~~~~~~ 348 (529)
+-+|++|+.. |....+.+...+... ..+..||++|.+.....
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 8899999984 333333333222211 24667888888865433
No 285
>PTZ00301 uridine kinase; Provisional
Probab=96.16 E-value=0.0065 Score=56.49 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=24.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
..+|+|.|.+|+||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 45899999999999999999998875443
No 286
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.046 Score=60.63 Aligned_cols=103 Identities=17% Similarity=0.285 Sum_probs=62.3
Q ss_pred ccccchhHHhHHHHhc----------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHH
Q 041923 211 LVGVESKVGEIESLLA----------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQ 280 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~----------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 280 (529)
.+|-+..+..|.+.+. ......+.|+.|+|||.||++++.-+....+.-+-+. +.+...
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-----------mse~~e 632 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-----------MSEFQE 632 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-----------hhhhhh
Confidence 3444455555555443 2346778999999999999999998866555444443 222222
Q ss_pred HHHHHHhcCCC---CCCCHHHHHHHhCCCc-EEEEEcCCC--CHHHHHHHHh
Q 041923 281 KLLSEVLRDEN---VIPDIEFNFTRLSRRK-ALIVLDDVT--CFRQIKFLIR 326 (529)
Q Consensus 281 ~ll~~~~~~~~---~~~~~~~l~~~l~~~~-~LLVlDdv~--~~~~l~~l~~ 326 (529)
...+.+..+ .......+-+.+++++ .+++||||+ +.+....|..
T Consensus 633 --vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq 682 (898)
T KOG1051|consen 633 --VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQ 682 (898)
T ss_pred --hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHH
Confidence 222222222 2223668888888877 577899997 4444443333
No 287
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.14 E-value=0.0071 Score=56.53 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCEEEEEecCcchHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
.+.+.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999885
No 288
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.11 E-value=0.033 Score=50.50 Aligned_cols=113 Identities=19% Similarity=0.084 Sum_probs=64.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHH-HHHh--cCC--C-CCC---C--
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLL-SEVL--RDE--N-VIP---D-- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll-~~~~--~~~--~-~~~---~-- 295 (529)
....|.|+|-.|-||||.|...+.+...+-..+.++..+..... .+-...+..+. -.+. +.. . ... +
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 46789999999999999999999987665545555554443311 22233333321 0000 000 0 000 0
Q ss_pred -----HHHHHHHhCC-CcEEEEEcCCC--------CHHHHHHHHhccCCCCCCcEEEEEeCcc
Q 041923 296 -----IEFNFTRLSR-RKALIVLDDVT--------CFRQIKFLIRSLDWFMPESRIIITTRDQ 344 (529)
Q Consensus 296 -----~~~l~~~l~~-~~~LLVlDdv~--------~~~~l~~l~~~~~~~~~gs~IliTtR~~ 344 (529)
.+..++.+.. +-=|||||.+. +.+++-.++... .++..||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r---p~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR---PGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC---CCCCEEEEECCCC
Confidence 3334444444 44599999993 334444444433 4677999999984
No 289
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.02 Score=58.83 Aligned_cols=44 Identities=34% Similarity=0.419 Sum_probs=32.9
Q ss_pred Ccccccch---hHHhHHHHhc-----------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVES---KVGEIESLLA-----------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~---~l~~l~~~L~-----------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.-|-|+ |++++.++|. =++-|.++|+||.|||-||++++-+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 44556664 5566666665 25779999999999999999998653
No 290
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.11 E-value=0.018 Score=53.89 Aligned_cols=46 Identities=30% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCcccccchhHH---hHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVG---EIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~---~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-+..||.+.... -|.+.|. .++.|..+|++|.|||.+|++++++..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 356788775433 4455554 689999999999999999999998654
No 291
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=96.10 E-value=0.088 Score=55.68 Aligned_cols=43 Identities=21% Similarity=0.368 Sum_probs=36.4
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..++|+...+.++.+.+. ....|.|+|.+|+|||++|+.+.+.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 468999988888877765 6677999999999999999988764
No 292
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.08 E-value=0.026 Score=58.48 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=55.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|.+|+|||+|+..+++....++..++.+..+++. ......+...+...-..... ..+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER---~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~ 218 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGER---SREGHELYHEMKESGVLDKTVMVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcc---hHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHH
Confidence 778899999999999999999998876554444444434332 34455555555443211111 0011
Q ss_pred -----HHHHHHHh---CCCcEEEEEcCCCC
Q 041923 296 -----IEFNFTRL---SRRKALIVLDDVTC 317 (529)
Q Consensus 296 -----~~~l~~~l---~~~~~LLVlDdv~~ 317 (529)
...+.+++ .++++||++||+..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 219 RVVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 23344444 37899999999943
No 293
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.04 Score=56.20 Aligned_cols=25 Identities=32% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+++|.|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999765
No 294
>PRK03839 putative kinase; Provisional
Probab=96.08 E-value=0.0048 Score=56.05 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=21.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|.|.|++|+||||+++.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 295
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.06 E-value=0.011 Score=53.93 Aligned_cols=97 Identities=19% Similarity=0.193 Sum_probs=55.1
Q ss_pred hHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh-cCC-----CCC
Q 041923 220 EIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL-RDE-----NVI 293 (529)
Q Consensus 220 ~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~-----~~~ 293 (529)
.|...+.....++|.|..|.|||||++.+...+... ...+.+.+..+... .. .... .+. ... ...
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~-~~------~~~~-~~~~~~~~~~~~~~~ 87 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQL-PH------PNWV-RLVTRPGNVEGSGEV 87 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCC-CC------CCEE-EEEEecCCCCCCCcc
Confidence 333334478899999999999999999998766432 22333322111111 00 0000 000 000 011
Q ss_pred CCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHH
Q 041923 294 PDIEFNFTRLSRRKALIVLDDVTCFRQIKFLI 325 (529)
Q Consensus 294 ~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~ 325 (529)
...+.+...++..+=.++++.+.+.+.+..+.
T Consensus 88 ~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 88 TMADLLRSALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred CHHHHHHHHhccCCCEEEEEccCcHHHHHHHH
Confidence 22556667777788899999998887655443
No 296
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.06 E-value=0.0098 Score=62.65 Aligned_cols=101 Identities=13% Similarity=0.167 Sum_probs=62.0
Q ss_pred hHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-CCC
Q 041923 217 KVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-VIP 294 (529)
Q Consensus 217 ~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~~~ 294 (529)
.++.+..++. ...++.|+|+.|.||||+...+.+.+...-...+-+.+-.+... .+. .+...... ...
T Consensus 230 ~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~--~~~--------~q~~v~~~~g~~ 299 (486)
T TIGR02533 230 LLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI--EGI--------GQIQVNPKIGLT 299 (486)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec--CCC--------ceEEEccccCcc
Confidence 3455555555 66799999999999999999888776433222333322111111 010 01100111 122
Q ss_pred CHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhc
Q 041923 295 DIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRS 327 (529)
Q Consensus 295 ~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~ 327 (529)
....++..|+..+=.|++..+.+.+........
T Consensus 300 f~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 300 FAAGLRAILRQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHH
Confidence 367788888999999999999999877665544
No 297
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.04 E-value=0.024 Score=57.42 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=57.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEE-ecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQ-NVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLS 304 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~-~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 304 (529)
....+.|+|..|+||||++..+++.+....+ ..++.. +..+... .....+....-.+++ .........++..|+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~--~~~~~~~~~~q~evg--~~~~~~~~~l~~aLR 223 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYIL--GSPDDLLPPAQSQIG--RDVDSFANGIRLALR 223 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhcc--CCCceeecccccccC--CCccCHHHHHHHhhc
Confidence 6778999999999999999999887754432 233322 1111110 000000000000010 011122567788899
Q ss_pred CCcEEEEEcCCCCHHHHHHHHhc
Q 041923 305 RRKALIVLDDVTCFRQIKFLIRS 327 (529)
Q Consensus 305 ~~~~LLVlDdv~~~~~l~~l~~~ 327 (529)
..+=.|+++.+.+.+..+..+..
T Consensus 224 ~~PD~I~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 224 RAPKIIGVGEIRDLETFQAAVLA 246 (372)
T ss_pred cCCCEEeeCCCCCHHHHHHHHHH
Confidence 99999999999999888765544
No 298
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=96.03 E-value=0.032 Score=57.50 Aligned_cols=88 Identities=16% Similarity=0.286 Sum_probs=55.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|.+|+|||+|+..++.....+...++.+..+++. .....++.+.++..-..... ..+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER---~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~ 218 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGER---TREGNDLYHEMKESGVIDKTALVYGQMNEPPGARM 218 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCC---chHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 678899999999999999999998776555555555544433 33455566655432211110 0111
Q ss_pred -----HHHHHHHh---CCCcEEEEEcCCCC
Q 041923 296 -----IEFNFTRL---SRRKALIVLDDVTC 317 (529)
Q Consensus 296 -----~~~l~~~l---~~~~~LLVlDdv~~ 317 (529)
.-.+.+++ +++++||++||+..
T Consensus 219 ~a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 219 RVALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 23344454 46899999999954
No 299
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.03 E-value=0.042 Score=48.17 Aligned_cols=25 Identities=40% Similarity=0.609 Sum_probs=22.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
++.|+|.+|+||||||+.+...+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987753
No 300
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.03 E-value=0.0078 Score=57.02 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
...+++|.|.+|.|||||++.++..+....
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 567999999999999999999998776543
No 301
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.03 E-value=0.14 Score=54.41 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=38.3
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++|....++++.+.+. ....|.|.|.+|+||+.+|+.+.+.-
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S 259 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS 259 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999998888875 67789999999999999999998643
No 302
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.055 Score=49.97 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..-+.+|-|+.|.|||||+..+.-
T Consensus 29 ~GEvhaiMGPNGsGKSTLa~~i~G 52 (251)
T COG0396 29 EGEVHAIMGPNGSGKSTLAYTIMG 52 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 778999999999999999999865
No 303
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.01 E-value=0.0066 Score=54.90 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.++|.++|++|+||||+|+.+.....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 57899999999999999999988753
No 304
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.00 E-value=0.0062 Score=54.76 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=23.2
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...|.|+|++|+||||+|+.++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999886
No 305
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.98 E-value=0.14 Score=45.86 Aligned_cols=34 Identities=32% Similarity=0.421 Sum_probs=27.5
Q ss_pred HHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 218 VGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 218 l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
++.+...|. ..++-.|+|..|+|||||...++-.
T Consensus 26 ~r~l~~~LeF~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 26 FRHLEERLEFRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred HHhhhhhccccCceEEEEcCCCccHHHHHHHHHhh
Confidence 334444566 8999999999999999999998764
No 306
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.97 E-value=0.26 Score=47.57 Aligned_cols=163 Identities=15% Similarity=0.220 Sum_probs=82.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHH-HHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC--------------
Q 041923 228 APLVGIWGMGGIGKTTIARAVFN-KISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-------------- 291 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~-~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-------------- 291 (529)
+-+..|+|+.|.|||+|.+.+.. ++-+--+ .++|+.-..+.-. +......-.++.+.--...+
T Consensus 87 P~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIp-p~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~ 165 (369)
T PF02456_consen 87 PFIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIP-PQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPK 165 (369)
T ss_pred ceEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCC-HHHHHHHHHHHHhcCCCCCCCCeecccccccccc
Confidence 44567899999999999998876 3333333 4444432222211 23333333444433221111
Q ss_pred ---------------CCCC-HHHHHHHhCCCcEEEEEcCCC----CHHHHHHHHhccCC-----CC--CCcEEEEEeCcc
Q 041923 292 ---------------VIPD-IEFNFTRLSRRKALIVLDDVT----CFRQIKFLIRSLDW-----FM--PESRIIITTRDQ 344 (529)
Q Consensus 292 ---------------~~~~-~~~l~~~l~~~~~LLVlDdv~----~~~~l~~l~~~~~~-----~~--~gs~IliTtR~~ 344 (529)
.+.+ .....++.++.++-||+|..- ....+..|...++. +. .|-.|+|.-.+-
T Consensus 166 Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNm 245 (369)
T PF02456_consen 166 FVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNM 245 (369)
T ss_pred ceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccC
Confidence 1111 344555666789999999872 22234444444331 11 344555554432
Q ss_pred hhhhhcCCCccceEec------cCCCcCCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 041923 345 KVLKNGGVKEKDIYEM------KALECENLPNEVGYQELSEKIINYAQGVPLALEILGCFL 399 (529)
Q Consensus 345 ~~~~~~~~~~~~~~~l------~~L~~~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L 399 (529)
.--...| . .+-.| .-++.+-. -.++.+-|-.+..|+|.+|..+-..+
T Consensus 246 nPR~d~g-G--NI~~LKiqAK~HIiSp~~~-----p~QlsRFin~yt~glp~~i~~LLKdi 298 (369)
T PF02456_consen 246 NPRRDIG-G--NIANLKIQAKCHIISPKMH-----PSQLSRFINNYTKGLPTAISLLLKDI 298 (369)
T ss_pred CcccccC-C--CccchhhhceeeeecCCCC-----HHHHHHHHHHhccCCChhHHHHHHHH
Confidence 1111110 0 11111 11222222 24778889999999999997775544
No 307
>PRK00625 shikimate kinase; Provisional
Probab=95.96 E-value=0.0057 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.7
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|.|+|++|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 308
>PRK04040 adenylate kinase; Provisional
Probab=95.96 E-value=0.007 Score=55.33 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|+|++|+||||+++.++.++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35799999999999999999998874
No 309
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.95 E-value=0.49 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=27.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
.+.+|.++|.-|.||||-+-.+++.++. +...+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kvll 133 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLL 133 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCceEE
Confidence 3678999999999999999999998776 3333333
No 310
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.95 E-value=0.03 Score=50.61 Aligned_cols=105 Identities=19% Similarity=0.148 Sum_probs=56.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEec--ccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNV--RKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLS 304 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~ 304 (529)
...+++|.|..|.|||||++.++.-... ....+.+... .-..+ ...+.. .....-.+...+.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q-~~~LSg--------------Gq~qrv~laral~ 87 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQ-YIDLSG--------------GELQRVAIAAALL 87 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcc-cCCCCH--------------HHHHHHHHHHHHh
Confidence 6889999999999999999998864332 2334443211 00000 000000 0011334455666
Q ss_pred CCcEEEEEcCCC---CHHHHH---HHHhccCCCCCCcEEEEEeCcchhhh
Q 041923 305 RRKALIVLDDVT---CFRQIK---FLIRSLDWFMPESRIIITTRDQKVLK 348 (529)
Q Consensus 305 ~~~~LLVlDdv~---~~~~l~---~l~~~~~~~~~gs~IliTtR~~~~~~ 348 (529)
.++-++++|.-. |....+ .++..+.. ..+..||++|.+.....
T Consensus 88 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 88 RNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 778899999883 333322 22222211 12356777777765544
No 311
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.044 Score=49.00 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
....+.|.|..|+|||||.+.++--++.
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p 54 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRP 54 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCC
Confidence 6788999999999999999999864433
No 312
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.92 E-value=0.011 Score=50.41 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=25.8
Q ss_pred HhccCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 224 LLAAAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 224 ~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|....+|.+.|.-|.|||||++.+++.+.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 333778999999999999999999998753
No 313
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.91 E-value=0.21 Score=51.93 Aligned_cols=63 Identities=21% Similarity=0.291 Sum_probs=41.6
Q ss_pred HHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHh-ccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 218 VGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKIS-RNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 218 l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
+..|.+.+. ...++.|.|.+|+|||++|..++.... ..-..++|+. . ......+...++....
T Consensus 181 ~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS-l------Em~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 181 LPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS-L------EMSAEQLGERLLASKS 247 (421)
T ss_pred ChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE-C------CCCHHHHHHHHHHHHc
Confidence 344444443 788999999999999999999997765 2222344443 2 3456666777665543
No 314
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.90 E-value=0.023 Score=51.23 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=60.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCC---------CC---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENV---------IP--- 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---------~~--- 294 (529)
...+++|.|..|.|||||.+.++..... ..+.+.+... .... .........+ ......... .+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGA-DISQ--WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCE-Eccc--CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHH
Confidence 6789999999999999999999875432 3344444211 1100 0111111110 000000000 11
Q ss_pred -CHHHHHHHhCCCcEEEEEcCCC---CHHH---HHHHHhccCCCCCCcEEEEEeCcchhhh
Q 041923 295 -DIEFNFTRLSRRKALIVLDDVT---CFRQ---IKFLIRSLDWFMPESRIIITTRDQKVLK 348 (529)
Q Consensus 295 -~~~~l~~~l~~~~~LLVlDdv~---~~~~---l~~l~~~~~~~~~gs~IliTtR~~~~~~ 348 (529)
..-.+...+-.++=+|+||+.. |... +..++..+. ..|..||++|.+.....
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH
Confidence 1334455566677799999884 3333 333333322 23667888888776553
No 315
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.024 Score=51.11 Aligned_cols=114 Identities=15% Similarity=0.217 Sum_probs=59.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCC-----------CC-
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENV-----------IP- 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-----------~~- 294 (529)
....++|.|..|.|||||++.++..... ..+.+++... .... .. ......+ ..+...... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~-~~~~--~~-~~~~~~i-~~~~q~~~~~~~~tv~~~~~LS~ 98 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGK-DIKK--EP-EEVKRRI-GYLPEEPSLYENLTVRENLKLSG 98 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCE-Eccc--ch-HhhhccE-EEEecCCccccCCcHHHHhhcCH
Confidence 6789999999999999999998864322 2333333211 0000 00 0000000 000000000 11
Q ss_pred ---CHHHHHHHhCCCcEEEEEcCCC---CHHH---HHHHHhccCCCCCCcEEEEEeCcchhhh
Q 041923 295 ---DIEFNFTRLSRRKALIVLDDVT---CFRQ---IKFLIRSLDWFMPESRIIITTRDQKVLK 348 (529)
Q Consensus 295 ---~~~~l~~~l~~~~~LLVlDdv~---~~~~---l~~l~~~~~~~~~gs~IliTtR~~~~~~ 348 (529)
..-.+...+..++=++++|+.. |... +..++..+. ..|..||++|.+.....
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~ 159 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHH
Confidence 1334556666788899999984 3333 333333322 23567888888766544
No 316
>PF13245 AAA_19: Part of AAA domain
Probab=95.90 E-value=0.017 Score=44.18 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+.+++.|.|.+|.|||+++.+.+..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57788899999999996666665544
No 317
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.88 E-value=0.033 Score=55.28 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceE
Q 041923 208 KNHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSC 260 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 260 (529)
..++||.....+..--.+. ..+.+.|.|++|.|||+||..+++.+..+.+...
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 5789998766554433332 6899999999999999999999999988766433
No 318
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.88 E-value=0.0066 Score=56.61 Aligned_cols=26 Identities=35% Similarity=0.671 Sum_probs=23.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+..+|+|.|.+|+|||||+..++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 319
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.86 E-value=0.022 Score=55.07 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=63.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCC-----C---CCCCHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDE-----N---VIPDIEFN 299 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-----~---~~~~~~~l 299 (529)
...++|.|.+|.|||||.+.++..+... ...+++.. ..... .....++.... ..+.... + .......+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g-~~v~~-~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRG-KKVGI-VDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECC-EEeec-chhHHHHHHHh-cccccccccccccccccchHHHHH
Confidence 3689999999999999999999876543 23333321 11110 01112222111 1110000 0 00112223
Q ss_pred HHHhC-CCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeCcchh
Q 041923 300 FTRLS-RRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTRDQKV 346 (529)
Q Consensus 300 ~~~l~-~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR~~~~ 346 (529)
...+. ..+=++++|.+...+.+..+...+. .|..+|+||.+..+
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 33333 5788999999988887777776653 57789999987655
No 320
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.85 E-value=0.01 Score=59.51 Aligned_cols=50 Identities=30% Similarity=0.292 Sum_probs=43.0
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
...++|++..+..+...+...+.+.+.|.+|+|||+||+.++..+...|.
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34599999988888888888888999999999999999999998875444
No 321
>PRK15115 response regulator GlrR; Provisional
Probab=95.85 E-value=0.33 Score=50.93 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=34.3
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++|....+.++.+... ....|.|.|.+|+|||+||+.+.+..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s 181 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS 181 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc
Confidence 357888877776666543 56778999999999999999887643
No 322
>PRK06547 hypothetical protein; Provisional
Probab=95.84 E-value=0.011 Score=53.23 Aligned_cols=26 Identities=38% Similarity=0.341 Sum_probs=23.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+|+|.|.+|+||||||..+++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 67789999999999999999999864
No 323
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.83 E-value=0.011 Score=53.29 Aligned_cols=28 Identities=43% Similarity=0.531 Sum_probs=24.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..+++|.|++|+||||+|+.++..+...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999999999987543
No 324
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.83 E-value=0.051 Score=54.21 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...++-|+|.+|+|||+|+.+++....
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~ 127 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ 127 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc
Confidence 578899999999999999999997653
No 325
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.053 Score=53.02 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..++++|+|++|+||||++..++..+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45699999999999999999999877644
No 326
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.81 E-value=0.081 Score=50.44 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=35.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEecccccCCCCcHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNVRKESQSPGGLARLQQKLLS 284 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 284 (529)
...++.|.|.+|+|||+++.+++.....+ -..++|+. . ......+...++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s-~------E~~~~~~~~r~~~ 63 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS-L------EMSKEQLLQRLLA 63 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe-C------CCCHHHHHHHHHH
Confidence 67799999999999999999999887655 33444543 2 3344555555543
No 327
>PRK10436 hypothetical protein; Provisional
Probab=95.80 E-value=0.02 Score=59.70 Aligned_cols=106 Identities=12% Similarity=0.192 Sum_probs=63.5
Q ss_pred cccch-hHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcC
Q 041923 212 VGVES-KVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRD 289 (529)
Q Consensus 212 vGR~~-~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 289 (529)
.|... .++.+.+++. ...+|.|+|+.|+||||....+...+...-..++-+.+--+... .+. .+..-.
T Consensus 200 LG~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l--~gi--------~Q~~v~ 269 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL--AGI--------NQTQIH 269 (462)
T ss_pred cCcCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC--CCc--------ceEeeC
Confidence 34433 4555666665 78899999999999999988777765433222222221111100 000 011111
Q ss_pred -CCCCCCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhc
Q 041923 290 -ENVIPDIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRS 327 (529)
Q Consensus 290 -~~~~~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~ 327 (529)
.........++..|+..+=.|++..+.|.+..+..+..
T Consensus 270 ~~~g~~f~~~lr~~LR~dPDvI~vGEIRD~eta~~al~A 308 (462)
T PRK10436 270 PKAGLTFQRVLRALLRQDPDVIMVGEIRDGETAEIAIKA 308 (462)
T ss_pred CccCcCHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHH
Confidence 11223367788889999999999999999887754444
No 328
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.80 E-value=0.02 Score=48.13 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=50.9
Q ss_pred cEEeccCccccccchHHHHHHHHhhCCCcEEee-CCCCCCCCCCcchHHHHhhcceEEEEeccc
Q 041923 27 DVFLSFSRAETRDSFTSHLRSALCQKSIETFID-DQLIRGDDISESLPDTIAASSISIIIFSER 89 (529)
Q Consensus 27 dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d-~~~~~g~~~~~~i~~~i~~s~~~i~v~S~~ 89 (529)
.|||.|. .| ......+...|+..|+.+.+= +....|..+.+.+.+.+.+|+.+|++++|+
T Consensus 1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899998 66 467889999999889887653 356889999999999999999999999985
No 329
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.80 E-value=0.027 Score=55.55 Aligned_cols=98 Identities=18% Similarity=0.258 Sum_probs=57.6
Q ss_pred HhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccC--cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCH
Q 041923 219 GEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNF--EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDI 296 (529)
Q Consensus 219 ~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~ 296 (529)
+.|..++...+.+.|+|..|+||||++..++..+.... ...+.+.+..+......... .+........-.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~~~~~~~~~~ 194 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLRTSDDAISMT 194 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEEecCCCCCHH
Confidence 33444444677899999999999999999998875532 22223322222111000000 000001111225
Q ss_pred HHHHHHhCCCcEEEEEcCCCCHHHHHHH
Q 041923 297 EFNFTRLSRRKALIVLDDVTCFRQIKFL 324 (529)
Q Consensus 297 ~~l~~~l~~~~~LLVlDdv~~~~~l~~l 324 (529)
..++..|+..+=.||+..+.+.+.++.+
T Consensus 195 ~~l~~aLR~~pD~iivGEiR~~ea~~~l 222 (299)
T TIGR02782 195 RLLKATLRLRPDRIIVGEVRGGEALDLL 222 (299)
T ss_pred HHHHHHhcCCCCEEEEeccCCHHHHHHH
Confidence 6777888888889999999888766544
No 330
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.79 E-value=0.0084 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++|+|.|++|+||||+|+.++..+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999765
No 331
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.79 E-value=0.062 Score=51.90 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=59.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC-cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC------CCC--C--
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF-EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN------VIP--D-- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~------~~~--~-- 295 (529)
...++.|-|.+|+|||++|.+++..+..+. ..+.|+. . ......+...++.....-.. ... .
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~S-l------Em~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~ 90 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFS-L------EMSEEELAARLLARLSGVPYNKIRSGDLSDEEFE 90 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEE-S------SS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEc-C------CCCHHHHHHHHHHHhhcchhhhhhccccCHHHHH
Confidence 677999999999999999999999877653 3444443 2 34556677777666543321 000 1
Q ss_pred -HHHHHHHhCCCcEEEEEcCCC-CHHHHHHHHhccCCCCCCcEEEEE
Q 041923 296 -IEFNFTRLSRRKALIVLDDVT-CFRQIKFLIRSLDWFMPESRIIIT 340 (529)
Q Consensus 296 -~~~l~~~l~~~~~LLVlDdv~-~~~~l~~l~~~~~~~~~gs~IliT 340 (529)
.......+.+.+ +.|.|.-. +.+.+......+.....+..+||.
T Consensus 91 ~~~~~~~~l~~~~-l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~I 136 (259)
T PF03796_consen 91 RLQAAAEKLSDLP-LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFI 136 (259)
T ss_dssp HHHHHHHHHHTSE-EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEE
T ss_pred HHHHHHHHHhhCc-EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEe
Confidence 222334455555 44444332 555655544433221244455544
No 332
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.79 E-value=0.18 Score=53.66 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=38.2
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..++|....++++.+.+. ....|.|+|.+|+||+.+|+.+.+.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 459999999999888875 6778999999999999999999876
No 333
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.79 E-value=0.094 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=21.4
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+.|.|.+|+|||++|..++.+.
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998764
No 334
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.78 E-value=0.056 Score=51.56 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+..|.|++|+|||+|+.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567999999999999999998754
No 335
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.067 Score=51.14 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=35.6
Q ss_pred CcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 209 NHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...-|-+..-+.|.+... .-+-|.++|++|.|||.||++++.+..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn 191 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN 191 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC
Confidence 356777777777777643 346899999999999999999997643
No 336
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.76 E-value=0.026 Score=54.33 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=27.3
Q ss_pred HhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 219 GEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 219 ~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..|.++|. ...+.=|+|.+|+|||+|+.+++-..
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~ 62 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNV 62 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHh
Confidence 34556665 57788899999999999999998654
No 337
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.013 Score=51.64 Aligned_cols=36 Identities=28% Similarity=0.314 Sum_probs=29.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
...+|.++|++|.||||+|..+...+.........+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 567999999999999999999999987765443333
No 338
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.047 Score=51.79 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCcEEEEEcCC----C--CHHHHHHHHhccCCCCCCcEEEEEeCcchhh
Q 041923 296 IEFNFTRLSRRKALIVLDDV----T--CFRQIKFLIRSLDWFMPESRIIITTRDQKVL 347 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv----~--~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~ 347 (529)
...+.+.|..++=||+||.- | ....+-.++..+. ..|..||+.|.+-...
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v 202 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLV 202 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHh
Confidence 56677788889999999975 2 2334555555554 2388899999885443
No 339
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.75 E-value=0.0082 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.0
Q ss_pred EEEEecCcchHHHHHHHHHHHHhc
Q 041923 231 VGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
|.|+|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999998754
No 340
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.74 E-value=0.097 Score=62.13 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.++-|.++|++|.|||.||+++|.+.
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 67889999999999999999999864
No 341
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.74 E-value=0.019 Score=55.46 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=30.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|.|.+|+|||+|+.+++.....+-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 6889999999999999999999887655545566665
No 342
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.74 E-value=0.017 Score=57.42 Aligned_cols=109 Identities=18% Similarity=0.184 Sum_probs=60.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
....++|.|..|.|||||++.+...+.... ..+.+.+..+..........+. ..............+.+...++..
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~---~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLF---YSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEE---ecCCCCCcCccCHHHHHHHHhcCC
Confidence 788999999999999999999887654332 2333333222211000000000 000000011122256677778888
Q ss_pred cEEEEEcCCCCHHHHHHHHhccCCCCCCcE-EEEEeCc
Q 041923 307 KALIVLDDVTCFRQIKFLIRSLDWFMPESR-IIITTRD 343 (529)
Q Consensus 307 ~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~-IliTtR~ 343 (529)
+=.|++|.+.+.+.++. +.... .|.. ++.|+..
T Consensus 219 pd~ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha 252 (308)
T TIGR02788 219 PDRIILGELRGDEAFDF-IRAVN---TGHPGSITTLHA 252 (308)
T ss_pred CCeEEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeC
Confidence 88999999988766554 43332 2332 4566654
No 343
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.73 E-value=0.086 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.155 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..++++|.|+.|.|||||.+.+.-.+
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHH
Confidence 34799999999999999999987643
No 344
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.73 E-value=0.013 Score=53.25 Aligned_cols=26 Identities=46% Similarity=0.652 Sum_probs=22.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+|+|.|.+|+||||||..++..+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999887543
No 345
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.72 E-value=0.016 Score=56.23 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=31.8
Q ss_pred HHHHhc--cCCEEEEEecCcchHHHHHHHHHHHHhccCcceE
Q 041923 221 IESLLA--AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSC 260 (529)
Q Consensus 221 l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~ 260 (529)
.+++|. +..++.|.|.+|+|||||+..+...+.......+
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~V 136 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAV 136 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEE
Confidence 444444 7899999999999999999999998876654333
No 346
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.71 E-value=0.018 Score=49.90 Aligned_cols=34 Identities=29% Similarity=0.520 Sum_probs=25.9
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFL 262 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~ 262 (529)
++|.|+|..|+|||||++.+++.+..+ +...++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 479999999999999999999998754 4433333
No 347
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.69 E-value=0.051 Score=53.87 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=26.1
Q ss_pred HhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 219 GEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 219 ~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..|.++|. ...++-|+|.+|+|||+|+.+++-.
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~ 119 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVT 119 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 34445555 5778889999999999999998754
No 348
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.03 Score=50.69 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||++.++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999864
No 349
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.67 E-value=0.059 Score=51.80 Aligned_cols=89 Identities=10% Similarity=0.122 Sum_probs=52.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh---ccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS---RNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD--- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~--- 295 (529)
....++|.|-.|+|||+|+..++++.. ......|.+..+++. .....++...+...-..... ..+.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR---~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~ 144 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGIT---MEDARFFKDDFEETGALERVVLFLNLANDPTI 144 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccc---cHHHHHHHHHhhhcCCcceEEEEEecCCCCHH
Confidence 677899999999999999999988653 111234444444433 34455666655543211111 0011
Q ss_pred --------HHHHHHHh---CCCcEEEEEcCCCCH
Q 041923 296 --------IEFNFTRL---SRRKALIVLDDVTCF 318 (529)
Q Consensus 296 --------~~~l~~~l---~~~~~LLVlDdv~~~ 318 (529)
...+.+++ .++++|+++||+...
T Consensus 145 ~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 145 ERIITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 22334444 268999999999543
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.66 E-value=0.072 Score=52.93 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.+.++++.|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 36799999999999999999999987654
No 351
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.04 Score=50.57 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=22.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+++|.|..|.|||||++.++-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999999985
No 352
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.64 E-value=0.049 Score=50.80 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCcEEEEEcCCC------CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc
Q 041923 296 IEFNFTRLSRRKALIVLDDVT------CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG 350 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv~------~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 350 (529)
.-.+.+.|-..|-+|+.|.-. +.+.+-.++..+. ...|..||+.|.++.++..+
T Consensus 150 RVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 150 RVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC
Confidence 566777888889999999762 2223333333321 02477899999998887754
No 353
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.63 E-value=0.058 Score=53.99 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=25.8
Q ss_pred hHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 220 EIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 220 ~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|.++|. ...++-|+|.+|+|||+|+.+++-..
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~ 150 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTT 150 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHH
Confidence 3444555 56788899999999999999987543
No 354
>PRK05973 replicative DNA helicase; Provisional
Probab=95.61 E-value=0.018 Score=54.32 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=30.3
Q ss_pred ccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 226 AAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 226 ~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
....++.|.|.+|+|||+|+.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 36789999999999999999999987655544455553
No 355
>PRK13947 shikimate kinase; Provisional
Probab=95.61 E-value=0.0093 Score=53.58 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
.|.|.|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999988743
No 356
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.60 E-value=0.032 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
No 357
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.60 E-value=0.17 Score=51.96 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...++++.|..|+||||++..++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998754
No 358
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.60 E-value=0.035 Score=53.21 Aligned_cols=26 Identities=35% Similarity=0.623 Sum_probs=22.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|+|||||++.++...
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999998753
No 359
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.60 E-value=0.0085 Score=54.53 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 360
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.60 E-value=0.0094 Score=55.52 Aligned_cols=26 Identities=38% Similarity=0.732 Sum_probs=23.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|.|.+|+|||||++.++..+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999998654
No 361
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.59 E-value=0.041 Score=56.72 Aligned_cols=88 Identities=13% Similarity=0.260 Sum_probs=53.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|.+|+|||+|+.++++.........+.+..+++. ......+.+.+...-..... ..+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR---~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~ 213 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGER---CREGEELYREMKEAGVLDNTVMVFGQMNEPPGARF 213 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC---cHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHH
Confidence 678899999999999999999988765332333434334332 34455666665543211111 0011
Q ss_pred -----HHHHHHHh---CCCcEEEEEcCCCC
Q 041923 296 -----IEFNFTRL---SRRKALIVLDDVTC 317 (529)
Q Consensus 296 -----~~~l~~~l---~~~~~LLVlDdv~~ 317 (529)
...+.+++ +++++||++||+..
T Consensus 214 ~~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 214 RVGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 23344444 45899999999953
No 362
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.59 E-value=0.031 Score=52.83 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=24.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+..+|+|+|.||.|||||..++...+...
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 67899999999999999999999987654
No 363
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.58 E-value=0.011 Score=54.40 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=25.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+.+|+|.|.+|+||||+|+.++..+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 4689999999999999999999988765
No 364
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=95.57 E-value=0.026 Score=60.81 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=61.9
Q ss_pred hhHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEE-EEecccccCCCCcHHHHHHHHHHHHhcCCC-C
Q 041923 216 SKVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCF-LQNVRKESQSPGGLARLQQKLLSEVLRDEN-V 292 (529)
Q Consensus 216 ~~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~ 292 (529)
..++.+.+++. ...+|.|+|+.|+||||+...+.+.+... ...++ +.+--+... .+. .+..-... .
T Consensus 303 ~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~~~~-~~~i~tiEdpvE~~~--~~~--------~q~~v~~~~g 371 (564)
T TIGR02538 303 DQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNILNTE-EVNISTAEDPVEINL--PGI--------NQVNVNPKIG 371 (564)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhhCCC-CceEEEecCCceecC--CCc--------eEEEeccccC
Confidence 34556666665 78899999999999999998877766332 22222 211111110 010 11111111 1
Q ss_pred CCCHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhc
Q 041923 293 IPDIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRS 327 (529)
Q Consensus 293 ~~~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~ 327 (529)
......++..|+..+=.|++..+.+.+.....+..
T Consensus 372 ~~~~~~l~~~LR~dPDvI~vGEiRd~eta~~a~~a 406 (564)
T TIGR02538 372 LTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKA 406 (564)
T ss_pred CCHHHHHHHHhccCCCEEEeCCCCCHHHHHHHHHH
Confidence 23367788889999999999999999887755544
No 365
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.57 E-value=0.14 Score=45.23 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHH
Q 041923 213 GVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 213 GR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
|.+..++.|.+.+. ....|++.|++|+|||||...+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 34444455544432 244678999999999999999975
No 366
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.57 E-value=0.017 Score=54.17 Aligned_cols=24 Identities=25% Similarity=0.022 Sum_probs=21.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
..++++|.|..|.||||+.+.++-
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999887
No 367
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.56 E-value=0.022 Score=61.73 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=46.4
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEec
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQNV 265 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~~ 265 (529)
.+.++|.+..++.+...+...+.+.++|++|+|||+|++.+++.+... |...+++.+.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~ 75 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP 75 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC
Confidence 567999999998888888866788899999999999999999987654 3444555443
No 368
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.043 Score=53.07 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=33.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
..+++=|+|+.|+||||||.+++-.....-...+|+...
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE 97 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTE 97 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCC
Confidence 678889999999999999999998777776677887643
No 369
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.55 E-value=0.026 Score=54.60 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=32.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..+++.|+|.+|+|||+++.+++.+.......++|+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 7899999999999999999999999888867677765
No 370
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.54 E-value=0.017 Score=53.29 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=28.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
...+++|+|.+|+||||||+.+...+...-...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 677999999999999999999999875543334555
No 371
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.53 E-value=0.036 Score=52.32 Aligned_cols=44 Identities=30% Similarity=0.332 Sum_probs=32.9
Q ss_pred hHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEE
Q 041923 220 EIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQ 263 (529)
Q Consensus 220 ~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~ 263 (529)
.|.+.|. ...++.|.|.+|+|||+|+.+++.....+ -..++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 4455554 78899999999999999999999876555 44555554
No 372
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=2 Score=42.32 Aligned_cols=130 Identities=8% Similarity=0.101 Sum_probs=70.8
Q ss_pred HhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhcc---------Cc-ceEEEEecccccCCCCcHHHHHHHHHHH
Q 041923 219 GEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRN---------FE-GSCFLQNVRKESQSPGGLARLQQKLLSE 285 (529)
Q Consensus 219 ~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 285 (529)
+.+.+.+. -..+..++|..|+||+++|..+++.+-.. .+ ...++ +..+. .-....+. .+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~-d~~g~---~i~vd~Ir-~l~~~ 80 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILF-DIFDK---DLSKSEFL-SAINK 80 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEe-ccCCC---cCCHHHHH-HHHHH
Confidence 34445554 35677899999999999999999986211 12 11112 11010 11122211 12111
Q ss_pred HhcCCCCCCCHHHHHHHhCCCcEEEEEcCCCC--HHHHHHHHhccCCCCCCcEEEEEeCc-chhhhhcCCCccceEeccC
Q 041923 286 VLRDENVIPDIEFNFTRLSRRKALIVLDDVTC--FRQIKFLIRSLDWFMPESRIIITTRD-QKVLKNGGVKEKDIYEMKA 362 (529)
Q Consensus 286 ~~~~~~~~~~~~~l~~~l~~~~~LLVlDdv~~--~~~l~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~~~~~~l~~ 362 (529)
+.-.. .-.+.+=++|+|+++. ....+.|+..+....+.+.+|++|.+ ..+++... .....+++.+
T Consensus 81 ~~~~~-----------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~-SRc~~~~f~~ 148 (299)
T PRK07132 81 LYFSS-----------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV-SRCQVFNVKE 148 (299)
T ss_pred hccCC-----------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH-hCeEEEECCC
Confidence 11000 0014666888898874 34567788877777778877776654 33333211 1116788888
Q ss_pred CCc
Q 041923 363 LEC 365 (529)
Q Consensus 363 L~~ 365 (529)
++.
T Consensus 149 l~~ 151 (299)
T PRK07132 149 PDQ 151 (299)
T ss_pred CCH
Confidence 765
No 373
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.52 E-value=0.016 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.123 Sum_probs=27.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
++.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3689999999999999999987665545556654
No 374
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=95.52 E-value=0.24 Score=51.96 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=35.1
Q ss_pred CcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..++|....++++...+. ....|.|+|..|+||+++|+.+...
T Consensus 139 ~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~ 185 (445)
T TIGR02915 139 RGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQL 185 (445)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 358888888888877765 4556779999999999999998764
No 375
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.52 E-value=0.021 Score=61.89 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=47.0
Q ss_pred CCcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhcc-CcceEEEEe
Q 041923 208 KNHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRN-FEGSCFLQN 264 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~-f~~~~~~~~ 264 (529)
-+.++|.+..++.|...+...+.+.|+|.+|+||||+|+.+++.+... ++...|..+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 467999999999888888877899999999999999999999876433 456666655
No 376
>PTZ00494 tuzin-like protein; Provisional
Probab=95.49 E-value=0.19 Score=51.17 Aligned_cols=121 Identities=13% Similarity=0.144 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcc-------------CCCCCCCCCch--hhHHhhhHHHHHhhcCCccccCCCCCCCccccccCCCCccc
Q 041923 148 MERWRSALTEAAN-------------LPGFDSHVFRN--ESELIKKVVNDILEKLPKELSCNNNIHLPEVLSCNNKNHLV 212 (529)
Q Consensus 148 ~~~w~~al~~~~~-------------~~g~~~~~~~~--e~~~i~~i~~~v~~~l~~~~~~~~~~~~p~~~~~~~~~~fv 212 (529)
...||-+|++=+. .-||.+++... .+-.+.-.++.+.+.+++..+.. .. .......+|
T Consensus 302 ERd~RY~l~KYsG~vSa~~a~Lgv~svFgwN~knYr~qQRs~Ql~~Av~TLsk~~~~~~~~~--~~-----a~a~~~~~V 374 (664)
T PTZ00494 302 DTNFRYALAKYKGTMSCIAGVLVVAYVFTANLRAYRRQQRGHQLRTAIETLSKAARPRKEEG--ML-----AAAAEAFEV 374 (664)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccc--cc-----ccccccccc
Confidence 5678888755432 34455554332 23334444555555544332111 01 112257899
Q ss_pred ccchhHHhHHHHhc-----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHH
Q 041923 213 GVESKVGEIESLLA-----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKL 282 (529)
Q Consensus 213 GR~~~l~~l~~~L~-----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 282 (529)
.|+.|-..+.+.|. .+|+++++|.-|.|||+|.+....+- --..+|+. ++.. ...+..+.+.|
T Consensus 375 ~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD-VRg~---EDtLrsVVKAL 442 (664)
T PTZ00494 375 RREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD-VGGT---EDTLRSVVRAL 442 (664)
T ss_pred chhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE-ecCC---cchHHHHHHHh
Confidence 99999998888886 78999999999999999999887642 23455554 4332 33444444443
No 377
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.48 E-value=0.031 Score=58.66 Aligned_cols=89 Identities=22% Similarity=0.221 Sum_probs=51.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC---------H
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD---------I 296 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---------~ 296 (529)
.....+|+|.+|+|||+|++.+++.+...++ ..+++.-+.+- +.....+.+.+-..+.......+. .
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER---peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~a 491 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER---PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELA 491 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc---hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHH
Confidence 6788999999999999999999998765443 33334333332 233334433321111111111111 2
Q ss_pred HHHHHHh--CCCcEEEEEcCCCCH
Q 041923 297 EFNFTRL--SRRKALIVLDDVTCF 318 (529)
Q Consensus 297 ~~l~~~l--~~~~~LLVlDdv~~~ 318 (529)
..+.+++ .++.+||++|++...
T Consensus 492 i~~Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 492 IERAKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHHHHcCCCEEEEEeCchHH
Confidence 2233344 578999999999544
No 378
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.48 E-value=0.0077 Score=55.01 Aligned_cols=21 Identities=38% Similarity=0.151 Sum_probs=19.0
Q ss_pred EEEEEecCcchHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~ 250 (529)
++.|+|..|.||||+.+.++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999984
No 379
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.011 Score=51.27 Aligned_cols=24 Identities=38% Similarity=0.643 Sum_probs=21.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998764
No 380
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.46 E-value=0.055 Score=51.89 Aligned_cols=119 Identities=14% Similarity=0.284 Sum_probs=71.9
Q ss_pred CCcccccchhHHhHHHHhc---------cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA---------AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARL 278 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~---------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 278 (529)
.+.|+-...+.+-|..-+. ...-|++.|-+|+|||.|..++.+.+.+.......+..+.+... .-.++
T Consensus 162 aP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFGGAGVGKTVlImELINNiAKaHGGySVF~GvGERTR---EGNDL 238 (521)
T KOG1350|consen 162 APEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR---EGNDL 238 (521)
T ss_pred ChhHhhhcccHHHHhhcceeeeeecccccCCeeeeeccCCccceeeHHHHHHHHHHhcCCeEEeeccccccc---cccHH
Confidence 4567777666665554332 67889999999999999999999988776555555555554433 22334
Q ss_pred HHHHHHHHhcCCC-C-----------------CCC-------HHHHHHHhCCCcEEEEEcCCCCH----HHHHHHHhccC
Q 041923 279 QQKLLSEVLRDEN-V-----------------IPD-------IEFNFTRLSRRKALIVLDDVTCF----RQIKFLIRSLD 329 (529)
Q Consensus 279 ~~~ll~~~~~~~~-~-----------------~~~-------~~~l~~~l~~~~~LLVlDdv~~~----~~l~~l~~~~~ 329 (529)
.+++...-.-... . ... .....+-..++.+||.+||+... ..+.+|+..++
T Consensus 239 Y~EM~E~gVI~l~~~~SKvaLV~GQMNePPGARaRV~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiP 318 (521)
T KOG1350|consen 239 YHEMIESGVINLEGETSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIP 318 (521)
T ss_pred HHHHHhcCeeeccCCcceEEEEeeccCCCCCceeeeeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCc
Confidence 4444332111000 0 000 23333334568999999999533 34666666654
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.46 E-value=0.027 Score=49.80 Aligned_cols=118 Identities=20% Similarity=0.181 Sum_probs=60.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
...+++|.|..|.|||||++.++..+. .....+++... ... ..........+. .+..-.......-.+...+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~-~~~--~~~~~~~~~~i~-~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGK-DIA--KLPLEELRRRIG-YVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCE-Ecc--cCCHHHHHhceE-EEeeCCHHHHHHHHHHHHHhcC
Confidence 568999999999999999999987543 23444554321 111 000111111000 0000000011133345556667
Q ss_pred cEEEEEcCCC---CHHHHHHHHhccCCC-CCCcEEEEEeCcchhhhh
Q 041923 307 KALIVLDDVT---CFRQIKFLIRSLDWF-MPESRIIITTRDQKVLKN 349 (529)
Q Consensus 307 ~~LLVlDdv~---~~~~l~~l~~~~~~~-~~gs~IliTtR~~~~~~~ 349 (529)
+-++++|+.. |......+...+... ..+..+|++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 8899999984 333333333322211 124678888887665544
No 382
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.46 E-value=0.01 Score=51.99 Aligned_cols=23 Identities=26% Similarity=0.674 Sum_probs=20.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.43 E-value=0.027 Score=53.69 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=33.3
Q ss_pred hHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 220 EIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 220 ~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.|.+.|. ...++.|.|.+|+|||+||.+++.....+-..++|+.
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3444454 6889999999999999999999887545455566664
No 384
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.42 E-value=0.078 Score=59.10 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=60.2
Q ss_pred hhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC
Q 041923 216 SKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD 295 (529)
Q Consensus 216 ~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~ 295 (529)
.+.+.+...+.+.+++.|.|.+|.||||++..+...+...-..+++.. +.+ .+...+....+. ....
T Consensus 356 ~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A--------pTg---~Aa~~L~~~~g~--~a~T 422 (744)
T TIGR02768 356 EQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA--------LSG---KAAEGLQAESGI--ESRT 422 (744)
T ss_pred HHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe--------CcH---HHHHHHHhccCC--ceee
Confidence 344444444445689999999999999999999876655322222221 111 111111111110 1111
Q ss_pred HHHH-HHHh-----CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 296 IEFN-FTRL-----SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 296 ~~~l-~~~l-----~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
+..+ .... -.+.-|||+|++. +..++..|+.... ..|+++|+.--.
T Consensus 423 i~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVGD~ 476 (744)
T TIGR02768 423 LASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVGDP 476 (744)
T ss_pred HHHHHhhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECCh
Confidence 2122 1111 1245799999995 5556666665322 357888776643
No 385
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.14 Score=56.19 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+++++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 57999999999999999999998764
No 386
>PRK08840 replicative DNA helicase; Provisional
Probab=95.42 E-value=0.18 Score=52.98 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=45.1
Q ss_pred ccccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHH
Q 041923 211 LVGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEV 286 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 286 (529)
..|...-...|.+.+. ...++.|-|.+|+|||++|..++.....+.. .+.|+. + ......+...++...
T Consensus 197 ~~gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fS-l------EMs~~ql~~Rlla~~ 269 (464)
T PRK08840 197 VTGVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFS-L------EMPAEQLMMRMLASL 269 (464)
T ss_pred CCCcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEe-c------cCCHHHHHHHHHHhh
Confidence 3444444444444443 7899999999999999999999887653222 233332 2 345667777776654
Q ss_pred h
Q 041923 287 L 287 (529)
Q Consensus 287 ~ 287 (529)
.
T Consensus 270 s 270 (464)
T PRK08840 270 S 270 (464)
T ss_pred C
Confidence 3
No 387
>PRK14528 adenylate kinase; Provisional
Probab=95.41 E-value=0.042 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 388
>PRK06904 replicative DNA helicase; Validated
Probab=95.39 E-value=0.34 Score=51.03 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=44.0
Q ss_pred ccchhHHhHHHHh---ccCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 213 GVESKVGEIESLL---AAAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 213 GR~~~l~~l~~~L---~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
|-..-...|.+.+ ....++.|-|.||+|||++|..++........ .++|+. + ......+...++....
T Consensus 203 Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fS-l------EMs~~ql~~Rlla~~s 274 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFS-L------EMPAEQIMMRMLASLS 274 (472)
T ss_pred CccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEe-c------cCCHHHHHHHHHHhhC
Confidence 3333344444443 37889999999999999999999987653322 233332 2 4456677777766543
No 389
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.39 E-value=0.07 Score=51.31 Aligned_cols=87 Identities=18% Similarity=0.131 Sum_probs=49.7
Q ss_pred cCCEEEEEecCcchHHHHH-HHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCC--------CC--CCC
Q 041923 227 AAPLVGIWGMGGIGKTTIA-RAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDE--------NV--IPD 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--------~~--~~~ 295 (529)
....++|.|.+|+|||+|| ..++++. +-+..+.+..+.+. ......+.+.+...-.... +. ...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer---~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQK---ASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccc---hHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 6788999999999999996 4455432 23444454444332 3445566666654321111 00 000
Q ss_pred ------HHHHHHHh--CCCcEEEEEcCCCCH
Q 041923 296 ------IEFNFTRL--SRRKALIVLDDVTCF 318 (529)
Q Consensus 296 ------~~~l~~~l--~~~~~LLVlDdv~~~ 318 (529)
.-.+.+++ +++.+||++||+...
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 12222332 478999999999644
No 390
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.39 E-value=0.078 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=23.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....++|+|..|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 8899999999999999999998753
No 391
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=95.39 E-value=0.059 Score=56.02 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=53.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC------------CCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN------------VIP 294 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~------------~~~ 294 (529)
....++|.|-+|+|||+|+..++.........++.+..+++. .....++...++..-..... ..+
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGER---grEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd 236 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER---TREGNDLYMEMKESGVINEQNIAESKVALVYGQMN 236 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccC---chHHHHHHHHHHhcCccccCcccccceEEEEECCC
Confidence 678899999999999999999998754433344544444433 23455566655542111100 000
Q ss_pred C-----------HHHHHHHhC--C-CcEEEEEcCCCC
Q 041923 295 D-----------IEFNFTRLS--R-RKALIVLDDVTC 317 (529)
Q Consensus 295 ~-----------~~~l~~~l~--~-~~~LLVlDdv~~ 317 (529)
. ...+.++++ + +++||++||+..
T Consensus 237 ~p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 237 EPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 0 234556663 3 499999999953
No 392
>PRK06217 hypothetical protein; Validated
Probab=95.37 E-value=0.012 Score=53.65 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred EEEEEecCcchHHHHHHHHHHHHh
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|+|.|.+|+||||||++++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998763
No 393
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.37 E-value=0.069 Score=53.12 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=27.2
Q ss_pred hHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 220 EIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 220 ~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+..+|. ...++-|+|.+|+|||+|+.+++....
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~ 120 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQ 120 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444454 578889999999999999999988754
No 394
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.37 E-value=0.023 Score=50.14 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=30.2
Q ss_pred hhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHH
Q 041923 216 SKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 216 ~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
..+++|.+.|.+ +++++.|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-CEEEEECCCCCCHHHHHHHHHhh
Confidence 457788888877 99999999999999999998753
No 395
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.37 E-value=0.021 Score=50.21 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=43.5
Q ss_pred EEecCcchHHHHHHHHHHHHhccCcceEEEE---ecccccCCCCcHHHHHHHHHHHHhcCCCCCCC---HHHHHHHhCC-
Q 041923 233 IWGMGGIGKTTIARAVFNKISRNFEGSCFLQ---NVRKESQSPGGLARLQQKLLSEVLRDENVIPD---IEFNFTRLSR- 305 (529)
Q Consensus 233 I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~l~~~l~~- 305 (529)
|.|+||+||||+|..++.++. | +.+. -++............+ .........++. ...+...+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~---~~is~~~llr~~~~~~s~~g~~i----~~~l~~g~~vp~~~v~~ll~~~l~~~ 71 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--L---VHISVGDLLREEIKSDSELGKQI----QEYLDNGELVPDELVIELLKERLEQP 71 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--S---EEEEHHHHHHHHHHTTSHHHHHH----HHHHHTTSS--HHHHHHHHHHHHHSG
T ss_pred CcCCCCCChHHHHHHHHHhcC--c---ceechHHHHHHHHhhhhHHHHHH----HHHHHhhccchHHHHHHHHHHHHhhh
Confidence 689999999999999998751 2 2222 0111111011111111 222222333333 4455555543
Q ss_pred -CcEEEEEcCCC-CHHHHHHHHh
Q 041923 306 -RKALIVLDDVT-CFRQIKFLIR 326 (529)
Q Consensus 306 -~~~LLVlDdv~-~~~~l~~l~~ 326 (529)
...-+|||++- +.++.+.|..
T Consensus 72 ~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 72 PCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp GTTTEEEEESB-SSHHHHHHHHH
T ss_pred cccceeeeeeccccHHHHHHHHH
Confidence 24567899994 6666666654
No 396
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.35 E-value=0.032 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|.|.|++|+||||+|+.+++++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 397
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.35 E-value=0.011 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 398
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.56 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..-|.++|++|.|||-||.+++...
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~ 725 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNS 725 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhC
Confidence 3568999999999999999998753
No 399
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.34 E-value=0.013 Score=51.53 Aligned_cols=20 Identities=40% Similarity=0.679 Sum_probs=18.9
Q ss_pred EEEEEecCcchHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVF 249 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~ 249 (529)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 68999999999999999987
No 400
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.33 E-value=0.12 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=22.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
....|+|+|..|+|||||++-+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 788999999999999999999875
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.32 E-value=0.018 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=22.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+|.++|++|+||||+|++++..+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999887644
No 402
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.32 E-value=0.14 Score=54.51 Aligned_cols=63 Identities=24% Similarity=0.319 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhcCCCccceEeccCC
Q 041923 296 IEFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNGGVKEKDIYEMKAL 363 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~l~~L 363 (529)
...|.+.|-.++=+|+||.-. |.+.+.+|-..+..+ +| .+||.|.++..+.... + .++++..-
T Consensus 161 Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~-t--~I~~ld~g 226 (530)
T COG0488 161 RVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVA-T--HILELDRG 226 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHh-h--heEEecCC
Confidence 455666777788899999874 455566655555433 44 7899999988887652 2 45555543
No 403
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.30 E-value=0.013 Score=50.89 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+|.|.|.+|+||||+|+.++.++
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 404
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.29 E-value=0.015 Score=53.56 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|.|.|.+|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 405
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.28 E-value=0.05 Score=56.18 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=70.7
Q ss_pred hHHhHHHHhc-cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhc-CCCCCC
Q 041923 217 KVGEIESLLA-AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLR-DENVIP 294 (529)
Q Consensus 217 ~l~~l~~~L~-~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~~ 294 (529)
..+.+.+++. ...++.++|+.|+||||..-.+...+......++-+.+--+... .++. ++.- +.....
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~--~gI~--------Q~qVN~k~glt 315 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQL--PGIN--------QVQVNPKIGLT 315 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeec--CCcc--------eeecccccCCC
Confidence 3445555555 88999999999999999999998887665554444432211111 1111 1111 111233
Q ss_pred CHHHHHHHhCCCcEEEEEcCCCCHHHHHHHHhccCCCCCCcEEEEEeC
Q 041923 295 DIEFNFTRLSRRKALIVLDDVTCFRQIKFLIRSLDWFMPESRIIITTR 342 (529)
Q Consensus 295 ~~~~l~~~l~~~~~LLVlDdv~~~~~l~~l~~~~~~~~~gs~IliTtR 342 (529)
....++..|++.|=+|.+..+.|.+..+...... --++.++||=
T Consensus 316 fa~~LRa~LRqDPDvImVGEIRD~ETAeiavqAa----lTGHLVlSTl 359 (500)
T COG2804 316 FARALRAILRQDPDVIMVGEIRDLETAEIAVQAA----LTGHLVLSTL 359 (500)
T ss_pred HHHHHHHHhccCCCeEEEeccCCHHHHHHHHHHH----hcCCeEeeec
Confidence 3677888889999999999999988877655552 2335555553
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=95.28 E-value=0.092 Score=52.62 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=32.1
Q ss_pred ccccchhHHhHHHHhc-------------------cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 211 LVGVESKVGEIESLLA-------------------AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 211 fvGR~~~l~~l~~~L~-------------------~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..|-..++..|.+.+. ..-++.|+|.+|+|||||.+.+....
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHh
Confidence 3455566666666653 46789999999999999999988754
No 407
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.26 E-value=0.066 Score=55.01 Aligned_cols=26 Identities=42% Similarity=0.639 Sum_probs=22.9
Q ss_pred hccCCEEEEEecCcchHHHHHHHHHH
Q 041923 225 LAAAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 225 L~~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
+.....++|.|++|.||||||+.+.-
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHc
Confidence 33788999999999999999999864
No 408
>PRK13948 shikimate kinase; Provisional
Probab=95.25 E-value=0.017 Score=52.43 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+.|.+.|+.|+||||+++.+++++.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998764
No 409
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.23 E-value=0.016 Score=52.50 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988754
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.22 E-value=0.016 Score=53.80 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
+..+++|+|..|.|||||.+.++.
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 347899999999999999999984
No 411
>PRK13946 shikimate kinase; Provisional
Probab=95.22 E-value=0.017 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+.|++.|++|+||||+++.+++++.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 356799999999999999999998873
No 412
>PRK07004 replicative DNA helicase; Provisional
Probab=95.21 E-value=0.19 Score=52.69 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=38.0
Q ss_pred hccCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHH
Q 041923 225 LAAAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEV 286 (529)
Q Consensus 225 L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 286 (529)
+....++.|-|.+|+|||++|..++.....+.. .++|+. + ......+..+++...
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fS-l------EM~~~ql~~R~la~~ 265 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFS-M------EMPGTQLAMRMLGSV 265 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEe-C------CCCHHHHHHHHHHhh
Confidence 337889999999999999999999987653322 233332 2 445566777776544
No 413
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.20 E-value=0.023 Score=51.73 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=29.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFL 262 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~ 262 (529)
.+++.|+|+.|+|||||+..+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 58899999999999999999999888777543333
No 414
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.20 E-value=0.059 Score=52.85 Aligned_cols=50 Identities=26% Similarity=0.342 Sum_probs=39.0
Q ss_pred CCcccccchhHHh---HHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 208 KNHLVGVESKVGE---IESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 208 ~~~fvGR~~~l~~---l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
.+.|||.....+. +.++.. ..+.|.|.|++|.|||+||..+++.+...-+
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 6789997654432 333333 7899999999999999999999999877644
No 415
>PRK13949 shikimate kinase; Provisional
Probab=95.20 E-value=0.017 Score=51.88 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHh
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
+.|.|.|++|+|||||++.+++.+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 416
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.20 E-value=0.033 Score=59.55 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=38.5
Q ss_pred CCcccccchhHHhHHHHhc--cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 208 KNHLVGVESKVGEIESLLA--AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.++|.+..++.+...+. ....+.|+|.+|+|||++|+.+.+..
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999998776 45778999999999999999998753
No 417
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.20 E-value=0.014 Score=54.83 Aligned_cols=25 Identities=40% Similarity=0.605 Sum_probs=22.4
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 5899999999999999999988753
No 418
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=95.19 E-value=0.049 Score=55.94 Aligned_cols=121 Identities=21% Similarity=0.209 Sum_probs=66.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcc-----eEEEEecccccCCCC----------------cHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEG-----SCFLQNVRKESQSPG----------------GLARLQQKLLSE 285 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~~~~~~~----------------~~~~l~~~ll~~ 285 (529)
..|.-+++|..|+|||||.+.+++.....|+. ++++........... .+..+...++..
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~g 184 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAG 184 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHh
Confidence 78889999999999999999999954444543 222211111111000 112222222222
Q ss_pred HhcCCC----CC---CC----HHHHHHHhCCCcEEEEEcCCCC---HHHHHHHHhccCCCCCCcEEEEEeCcchhhhh
Q 041923 286 VLRDEN----VI---PD----IEFNFTRLSRRKALIVLDDVTC---FRQIKFLIRSLDWFMPESRIIITTRDQKVLKN 349 (529)
Q Consensus 286 ~~~~~~----~~---~~----~~~l~~~l~~~~~LLVlDdv~~---~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~ 349 (529)
++=... +. +. .-.+.+++-.++=||.||.-.+ ...+.+|-..+.. .+..+||.|.++..+..
T Consensus 185 lGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~~T~liVSHDr~FLn~ 260 (582)
T KOG0062|consen 185 LGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WKITSLIVSHDRNFLNT 260 (582)
T ss_pred CCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CCceEEEEeccHHHHHH
Confidence 221111 01 11 4456666677888999998753 3445555555442 23568888888766554
No 419
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.017 Score=52.72 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=23.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998875
No 420
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.19 E-value=0.13 Score=47.61 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=20.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVF 249 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~ 249 (529)
...+++|.|..|.|||||...++
T Consensus 21 ~~g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 21 FSPLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34599999999999999999985
No 421
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.19 E-value=0.053 Score=53.42 Aligned_cols=100 Identities=16% Similarity=0.287 Sum_probs=62.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCC----------CCCCC-
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDE----------NVIPD- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----------~~~~~- 295 (529)
...-+++.|-+|+|||-|.+++.+.+...+.....+..+++... .-.++..++...-.... ++-.+
T Consensus 146 kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtR---EGndLy~Em~es~vl~ktalv~gQMNEpPGaR~ 222 (468)
T COG0055 146 KGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTR---EGNDLYHEMKESGVLDKTALVFGQMNEPPGARM 222 (468)
T ss_pred cCceeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEecccccc---chHHHHHHHHhcCCCCceeEEEeecCCCCccee
Confidence 67889999999999999999999999888777777776666543 23344444433321110 11011
Q ss_pred -----HHHHHHHh---CCCcEEEEEcCCCCH----HHHHHHHhccC
Q 041923 296 -----IEFNFTRL---SRRKALIVLDDVTCF----RQIKFLIRSLD 329 (529)
Q Consensus 296 -----~~~l~~~l---~~~~~LLVlDdv~~~----~~l~~l~~~~~ 329 (529)
--...+++ .++.+||.+||+... ..+..+++..+
T Consensus 223 RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~P 268 (468)
T COG0055 223 RVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMP 268 (468)
T ss_pred eehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCc
Confidence 11223333 367899999999533 23555555543
No 422
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.18 E-value=0.14 Score=55.22 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=24.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..++..|+|.+|.||||++..+...+...
T Consensus 159 ~~~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 159 KSNFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred hCCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 67899999999999999999988765443
No 423
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.18 E-value=0.074 Score=52.76 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=56.9
Q ss_pred HhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEE-EEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCH
Q 041923 219 GEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCF-LQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDI 296 (529)
Q Consensus 219 ~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~-~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~ 296 (529)
+.|..++.....+.|+|..|+|||||+..+...+....+ ..+. +.+..+.......... + .........
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~--------l-~~~~~~~~~ 205 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVA--------L-HTSDTVDMA 205 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEE--------e-ccCCCcCHH
Confidence 334444446678899999999999999999987643222 2222 2222111100000000 0 001122235
Q ss_pred HHHHHHhCCCcEEEEEcCCCCHHHHHHHH
Q 041923 297 EFNFTRLSRRKALIVLDDVTCFRQIKFLI 325 (529)
Q Consensus 297 ~~l~~~l~~~~~LLVlDdv~~~~~l~~l~ 325 (529)
..++..|+.++=.+|+..+.+.+.+..+.
T Consensus 206 ~lv~~aLR~~PD~IivGEiRg~ea~~~l~ 234 (323)
T PRK13833 206 RLLKSTMRLRPDRIIVGEVRDGAALTLLK 234 (323)
T ss_pred HHHHHHhCCCCCEEEEeecCCHHHHHHHH
Confidence 67778888899999999998887665433
No 424
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.11 Score=55.77 Aligned_cols=49 Identities=18% Similarity=0.149 Sum_probs=32.3
Q ss_pred HHHHHHHhCCCcEEEEEcCCC------CHHHHHHHHhccCCCCCCcEEEEEeCcchh
Q 041923 296 IEFNFTRLSRRKALIVLDDVT------CFRQIKFLIRSLDWFMPESRIIITTRDQKV 346 (529)
Q Consensus 296 ~~~l~~~l~~~~~LLVlDdv~------~~~~l~~l~~~~~~~~~gs~IliTtR~~~~ 346 (529)
.-.+.++|-++|.+||||+.. +...++..+..+. ...+.|+|+-|-.-+
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~--~~rTVlvIAHRLSTV 666 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLM--QGRTVLVIAHRLSTV 666 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhh--cCCeEEEEehhhhHh
Confidence 556778888899999999984 2333444443332 246778888886544
No 425
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.16 E-value=0.18 Score=48.61 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=62.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHH---HHHHHHHHhcCCCCCCCHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARL---QQKLLSEVLRDENVIPDIEFNFTRL 303 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l---~~~ll~~~~~~~~~~~~~~~l~~~l 303 (529)
....|.|+|+.|+||||-.....+.+..+++.++.-. ...++-+ .+.+..+-.-..+..+-...++..|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI--------EDPIE~vh~skkslI~QREvG~dT~sF~~aLraAL 195 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI--------EDPIEYVHESKKSLINQREVGRDTLSFANALRAAL 195 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe--------cCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHh
Confidence 7889999999999999888888887777777666543 1112211 1222222111122223377889999
Q ss_pred CCCcEEEEEcCCCCHHHHHHHHhc
Q 041923 304 SRRKALIVLDDVTCFRQIKFLIRS 327 (529)
Q Consensus 304 ~~~~~LLVlDdv~~~~~l~~l~~~ 327 (529)
+.-|=+|++-.+.|.+.+..-+..
T Consensus 196 ReDPDVIlvGEmRD~ETi~~ALtA 219 (353)
T COG2805 196 REDPDVILVGEMRDLETIRLALTA 219 (353)
T ss_pred hcCCCEEEEeccccHHHHHHHHHH
Confidence 999989999999998887764443
No 426
>PRK14529 adenylate kinase; Provisional
Probab=95.16 E-value=0.1 Score=48.92 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=49.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccC-cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCC---HHHHHHHhCC
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNF-EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPD---IEFNFTRLSR 305 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~---~~~l~~~l~~ 305 (529)
.|.|.|++|+||||+++.++.++.-.+ ..+-.+. +.......+....+.++ ......++ ...+.+++.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr---~~i~~~t~lg~~i~~~i----~~G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFR---EHIGGGTELGKKAKEYI----DRGDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhh---hhccCCChHHHHHHHHH----hccCcchHHHHHHHHHHHHhc
Confidence 378999999999999999998764322 1112211 11110122223333332 22222222 5666666643
Q ss_pred C-cEEEEEcCCC-CHHHHHHHHh
Q 041923 306 R-KALIVLDDVT-CFRQIKFLIR 326 (529)
Q Consensus 306 ~-~~LLVlDdv~-~~~~l~~l~~ 326 (529)
. .-=+|||.+- +.+|.+.|..
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l~~ 97 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKLWE 97 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHH
Confidence 2 3458999994 5666655543
No 427
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.15 E-value=0.017 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEecCcchHHHHHHHHHHHH
Q 041923 231 VGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 428
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.037 Score=58.93 Aligned_cols=30 Identities=33% Similarity=0.399 Sum_probs=24.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
..+.+.++|++|.|||.||+.+++.....|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 455899999999999999999998654443
No 429
>PRK08006 replicative DNA helicase; Provisional
Probab=95.15 E-value=0.23 Score=52.24 Aligned_cols=68 Identities=15% Similarity=0.186 Sum_probs=43.8
Q ss_pred cccchhHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHhccC-cceEEEEecccccCCCCcHHHHHHHHHHHH
Q 041923 212 VGVESKVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKISRNF-EGSCFLQNVRKESQSPGGLARLQQKLLSEV 286 (529)
Q Consensus 212 vGR~~~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 286 (529)
.|...-...|.+.+. ...++.|-|.||+|||++|..++.....+. ..++|+. + ......+..+++...
T Consensus 205 ~Gi~TG~~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fS-l------EM~~~ql~~Rlla~~ 276 (471)
T PRK08006 205 TGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFS-L------EMPGEQIMMRMLASL 276 (471)
T ss_pred CcccCCCHHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEe-c------cCCHHHHHHHHHHHh
Confidence 344444444444433 788999999999999999999998765322 2233332 2 345666777777654
No 430
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.11 Score=55.91 Aligned_cols=45 Identities=29% Similarity=0.338 Sum_probs=33.6
Q ss_pred cccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 210 HLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 210 ~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..=|-+....+|.+-+. ...-|.+||++|.|||-||++++.+..-
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL 731 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL 731 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee
Confidence 34456666666666554 3557899999999999999999987543
No 431
>PRK14530 adenylate kinase; Provisional
Probab=95.14 E-value=0.02 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.4
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+.|+|.|++|+||||+|+.++..+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999876
No 432
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.13 E-value=0.02 Score=58.14 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=38.2
Q ss_pred CCcccccchhHHhHHHHhc----------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA----------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+..++|.+...+.+.-.+. .++.|.++|++|+|||+||+.++..+...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~ 74 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 74 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4568888888777765543 24789999999999999999999987544
No 433
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.13 E-value=0.035 Score=53.29 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=27.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE 257 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~ 257 (529)
+..+|+|+|.||+|||||...+..++..+-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~ 80 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGH 80 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCc
Confidence 6679999999999999999999998866544
No 434
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.12 E-value=0.19 Score=47.03 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=23.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
....++|.|..|.|||||++.++..
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 7789999999999999999999864
No 435
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.12 E-value=0.016 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.742 Sum_probs=21.2
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+|+|.|.+|+|||||++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 436
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=95.10 E-value=0.069 Score=56.45 Aligned_cols=290 Identities=16% Similarity=0.151 Sum_probs=144.2
Q ss_pred hhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCC--
Q 041923 216 SKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVI-- 293 (529)
Q Consensus 216 ~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~-- 293 (529)
+..++|...+.+..++.|.|..|+||||=.-+|..+..-.-.+.+-+..-+ .-....+++.+....+......
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPR-----RVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPR-----RVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCc-----hHHHHHHHHHHHHHhCCCcCceee
Confidence 344556666667999999999999999988888876432222223222111 2234556666666554422210
Q ss_pred ----------CC--------HHHHHHHhCC----CcEEEEEcCCCCHH----HHHHHHhccCCCCCCcEEEEEeCcchh-
Q 041923 294 ----------PD--------IEFNFTRLSR----RKALIVLDDVTCFR----QIKFLIRSLDWFMPESRIIITTRDQKV- 346 (529)
Q Consensus 294 ----------~~--------~~~l~~~l~~----~~~LLVlDdv~~~~----~l~~l~~~~~~~~~gs~IliTtR~~~~- 346 (529)
.. --.+++.+.+ +=-+||||.+++.. .+--|+..+....+.-|+||+|-.-..
T Consensus 129 Y~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~ 208 (674)
T KOG0922|consen 129 YTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAE 208 (674)
T ss_pred eEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecHH
Confidence 00 3445555543 55689999997433 232333333333456799998764222
Q ss_pred --hhhcCCCccceEeccC-------CCcCCCCCcccHH-HHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHH---HHH
Q 041923 347 --LKNGGVKEKDIYEMKA-------LECENLPNEVGYQ-ELSEKIINYAQGVPLALEILGCFLYGKGKEVWENA---INE 413 (529)
Q Consensus 347 --~~~~~~~~~~~~~l~~-------L~~~~~~~~~~~~-~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~---l~~ 413 (529)
....... ..+.+++ +-.. .|. .++- +...-+.+.-.+-|-. -+--+| .+.++-+.. +.+
T Consensus 209 kfS~yF~~a--~i~~i~GR~fPVei~y~~-~p~-~dYv~a~~~tv~~Ih~~E~~G--DILvFL--tGqeEIe~~~~~l~e 280 (674)
T KOG0922|consen 209 KFSEYFNNA--PILTIPGRTFPVEILYLK-EPT-ADYVDAALITVIQIHLTEPPG--DILVFL--TGQEEIEAACELLRE 280 (674)
T ss_pred HHHHHhcCC--ceEeecCCCCceeEEecc-CCc-hhhHHHHHHHHHHHHccCCCC--CEEEEe--CCHHHHHHHHHHHHH
Confidence 1111111 2222222 2111 222 2222 2222232222222211 000111 123333322 333
Q ss_pred HhhccchhHHHHHHHhHhCCCHHhHHHHHhhccccCCC-C-HHHHHHHHHHcCCchhhHHHHHhhCCcEEEe--C-----
Q 041923 414 LKRILNMEIQKVLKISFDGLDDEQKNIFLDIACFFKGE-D-KEFVIKFLDACGFAAQIGISDLVDKSLIIIH--G----- 484 (529)
Q Consensus 414 l~~~~~~~i~~~l~~s~~~L~~~~~~~l~~la~f~~~~-~-~~~l~~l~~~~~~~~~~~l~~L~~~sLl~~~--~----- 484 (529)
......++...+.---|..||.++|. .+|.+.. . +..+..-=.++....-.++.--+|-|++... +
T Consensus 281 ~~~~~~~~~~~~~lply~aL~~e~Q~-----rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~ 355 (674)
T KOG0922|consen 281 RAKSLPEDCPELILPLYGALPSEEQS-----RVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGL 355 (674)
T ss_pred HhhhccccCcceeeeecccCCHHHhh-----ccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCc
Confidence 22222222222333456777765543 2332211 1 1111000011111222345567788888766 2
Q ss_pred CeEEcCHHHHHHHHHHHhhcCCCCCCCcccccChhhHHH
Q 041923 485 NSITMHDLLQEMGREIVRQESVNNPGERSRLWHHEDIIE 523 (529)
Q Consensus 485 ~~~~mH~lvr~~a~~~~~~e~~~~~~~~~rl~~~~d~~~ 523 (529)
+.+.++++=+.-|.++.....-..||++.||...++..+
T Consensus 356 ~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 356 DSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDK 394 (674)
T ss_pred cceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhh
Confidence 236678899999999998888889999999999888743
No 437
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.09 E-value=0.017 Score=49.36 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.+-|.|+|-||+|||||+.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4678999999999999999999653
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.09 E-value=0.033 Score=51.56 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=29.1
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhccCcceEEEEeccc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRK 267 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 267 (529)
.|+|+|-||+||||+|..++.++..+-...+...+...
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999999988877666544555555443
No 439
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.08 E-value=0.056 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....++|.|..|.|||||.+.++.-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 77899999999999999999998654
No 440
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.08 E-value=0.11 Score=49.92 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=23.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||++.++..
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 7889999999999999999999864
No 441
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.06 E-value=0.026 Score=57.41 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=39.4
Q ss_pred CCcccccchhHHhHHHHhc----------------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA----------------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...++|.+...+.+..++. ....+.++|++|+|||+||+.++..+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 5678999888888877763 14789999999999999999999876443
No 442
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.05 E-value=0.1 Score=51.94 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=55.3
Q ss_pred HHHHhccCCEEEEEecCcchHHHHHHHHHHHHhccC--cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHH
Q 041923 221 IESLLAAAPLVGIWGMGGIGKTTIARAVFNKISRNF--EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEF 298 (529)
Q Consensus 221 l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~ 298 (529)
|...+.....+.|+|..|+|||||+..++..+.... ...+.+.+..+.......... + ...........
T Consensus 141 L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~--------~-~~~~~~~~~~l 211 (319)
T PRK13894 141 IIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQ--------Y-HTSIDVNMTAL 211 (319)
T ss_pred HHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEE--------E-ecCCCCCHHHH
Confidence 333344788999999999999999999997653222 122222222211100000000 0 00112223567
Q ss_pred HHHHhCCCcEEEEEcCCCCHHHHHHH
Q 041923 299 NFTRLSRRKALIVLDDVTCFRQIKFL 324 (529)
Q Consensus 299 l~~~l~~~~~LLVlDdv~~~~~l~~l 324 (529)
+...|+..+=.||+..+.+.+.+..+
T Consensus 212 l~~aLR~~PD~IivGEiR~~Ea~~~l 237 (319)
T PRK13894 212 LKTTLRMRPDRILVGEVRGPEALDLL 237 (319)
T ss_pred HHHHhcCCCCEEEEeccCCHHHHHHH
Confidence 77888888889999999988766543
No 443
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.05 E-value=0.19 Score=47.85 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999864
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.05 E-value=0.041 Score=52.05 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=29.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
....+.|.|.+|+|||+|+.+++......-..++|+.
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 6789999999999999999998876544445556664
No 445
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.05 E-value=0.03 Score=55.39 Aligned_cols=48 Identities=15% Similarity=0.301 Sum_probs=42.6
Q ss_pred CCcccccchhHHhHHHHhc--------cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 208 KNHLVGVESKVGEIESLLA--------AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
...|+|.++.+++|.+.|. ..+++.+.|+.|.|||||+..+.+-+.+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 3479999999999999886 67899999999999999999998876554
No 446
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.04 E-value=0.19 Score=54.48 Aligned_cols=109 Identities=21% Similarity=0.229 Sum_probs=59.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccC---cceEEEEecccccCCCCcHHHHHHHHHHHHhcCC------CCCC-CH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNF---EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDE------NVIP-DI 296 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~------~~~~-~~ 296 (529)
..++..|+|.+|.||||++..+...+.... ...+.+.... ......+.+.+...+.... ..++ ..
T Consensus 166 ~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APT-----gkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a 240 (615)
T PRK10875 166 TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPT-----GKAAARLTESLGKALRQLPLTDEQKKRIPEEA 240 (615)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCc-----HHHHHHHHHHHHhhhhccccchhhhhcCCCch
Confidence 678999999999999999999988764432 1234443111 1222233322222111100 0001 12
Q ss_pred HHHHHHhCC------------Cc---EEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 297 EFNFTRLSR------------RK---ALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 297 ~~l~~~l~~------------~~---~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
..+.+.|.- .+ =+||+|.+. +......++..++ +++++|+---.
T Consensus 241 ~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~ 301 (615)
T PRK10875 241 STLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDR 301 (615)
T ss_pred HHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecch
Confidence 333333321 11 289999985 5666677777664 77888876544
No 447
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.02 E-value=0.016 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.583 Sum_probs=21.9
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.++|.|++|+|||||++.++..+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999765443
No 448
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.02 E-value=1.7 Score=41.47 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc-------------------CcceEEEEecccccCCCCcHHHHHHHHHHHHhc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN-------------------FEGSCFLQNVRKESQSPGGLARLQQKLLSEVLR 288 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~-------------------f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 288 (529)
.....++|..|+||.++|.+++..+--. ++...|+..... .-
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~----~I--------------- 67 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKN----PI--------------- 67 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcc----cC---------------
Confidence 4567899999999999999999864211 222222211000 00
Q ss_pred CCCCCCCHHHHHHHhC------CCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCcc-hhhhhcCCCccceEe
Q 041923 289 DENVIPDIEFNFTRLS------RRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRDQ-KVLKNGGVKEKDIYE 359 (529)
Q Consensus 289 ~~~~~~~~~~l~~~l~------~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~ 359 (529)
.++.+..+.+.+. +++=++|+|+++ +.+....|+..+....+++.+|++|.+. .++....-. ...+.
T Consensus 68 ---~id~ir~l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SR-Cq~~~ 143 (261)
T PRK05818 68 ---KKEDALSIINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSR-CVQYV 143 (261)
T ss_pred ---CHHHHHHHHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhh-eeeee
Confidence 1111222222221 234567889997 5567888988888777888887777754 333332111 14455
Q ss_pred ccCCC
Q 041923 360 MKALE 364 (529)
Q Consensus 360 l~~L~ 364 (529)
+.+..
T Consensus 144 ~~~~~ 148 (261)
T PRK05818 144 VLSKE 148 (261)
T ss_pred cCChh
Confidence 55543
No 449
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.01 E-value=0.025 Score=50.69 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=25.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
..++++|.|..|+|||||+..+...+..+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 35689999999999999999999987653
No 450
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.044 Score=54.31 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=36.4
Q ss_pred CcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 209 NHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
+...|..+..+.|.+... .=+-|.++|++|.|||-||++++.+...
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 457787777777777643 3467999999999999999999987653
No 451
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.99 E-value=0.061 Score=49.70 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999998764
No 452
>PRK15453 phosphoribulokinase; Provisional
Probab=94.98 E-value=0.036 Score=53.37 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
...+|+|.|.+|+||||+++.+++.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999987654
No 453
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.2 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
.|--.++|+||.|||++..++|+.+.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN 260 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC
Confidence 36788999999999999999998763
No 454
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=94.95 E-value=0.034 Score=53.93 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=29.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
++++|.|.+|+|||||+..++..++++. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999998886 455554
No 455
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.95 E-value=0.18 Score=49.90 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=22.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~ 251 (529)
...+++|.|..|.|||||.+.++..
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 6779999999999999999999864
No 456
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.94 E-value=0.083 Score=54.66 Aligned_cols=53 Identities=21% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHHHHHhCCCcEEEEEcCCC---CHHHHHHHHhccCCCCCCcEEEEEeCcchhhhhc
Q 041923 297 EFNFTRLSRRKALIVLDDVT---CFRQIKFLIRSLDWFMPESRIIITTRDQKVLKNG 350 (529)
Q Consensus 297 ~~l~~~l~~~~~LLVlDdv~---~~~~l~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 350 (529)
..+.+.|-.+|-||.||+-. |.+...+|-..+.....+ .++|++|.+..++..
T Consensus 230 ~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~v 285 (614)
T KOG0927|consen 230 AALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGV 285 (614)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhH
Confidence 34444555689999999984 556555555555433333 689999998776654
No 457
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.93 E-value=0.033 Score=51.05 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=32.0
Q ss_pred CcccccchhHHhHHHHhccCCEEEEEecCcchHHHHHHHHHH
Q 041923 209 NHLVGVESKVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFN 250 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~ 250 (529)
...+|-+.....|.-...+..-+.+.|.+|+|||+||+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGGHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCCCCeEEECCCCCCHHHHHHHHHH
Confidence 457787776666666666888999999999999999999986
No 458
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.93 E-value=0.042 Score=51.71 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=26.0
Q ss_pred hHHhHHHHhccCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 217 KVGEIESLLAAAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 217 ~l~~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+.+.+...+....+..|+|++|.|||+++..+...+
T Consensus 6 Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHh
Confidence 445555555544479999999999999888888876
No 459
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.91 E-value=0.069 Score=54.82 Aligned_cols=86 Identities=13% Similarity=0.192 Sum_probs=49.5
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC------
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD------ 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~------ 295 (529)
....++|.|..|+|||||+..++..... +..|+ ..+++. ......+...++..-..... ..+.
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGER---~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGER---GREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcCC---hHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 7789999999999999999988864322 33333 333322 33445555554333111110 0011
Q ss_pred -----HHHHHHHh--CCCcEEEEEcCCCCH
Q 041923 296 -----IEFNFTRL--SRRKALIVLDDVTCF 318 (529)
Q Consensus 296 -----~~~l~~~l--~~~~~LLVlDdv~~~ 318 (529)
...+.+++ +++++||++||+...
T Consensus 235 ~a~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 235 KGCETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 22233444 578999999999533
No 460
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.14 Score=54.52 Aligned_cols=46 Identities=28% Similarity=0.341 Sum_probs=36.2
Q ss_pred CCcccccchhHHhHHHHhc--------------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 208 KNHLVGVESKVGEIESLLA--------------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~--------------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
....-|.+...+++.+.+. -++-|.++|++|.|||.||++++-+..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 4567888877766666654 256799999999999999999997643
No 461
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.86 E-value=0.035 Score=49.96 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=32.1
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEec
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNV 265 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~ 265 (529)
..|+|-|.+|+|||+|..+.+..++++|...+.-.++
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di 50 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDI 50 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEecee
Confidence 5899999999999999999999999998876665433
No 462
>PRK04328 hypothetical protein; Provisional
Probab=94.85 E-value=0.049 Score=52.26 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=29.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
...++.|.|.+|.|||+|+.+++.....+-..++|+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 6889999999999999999999887544445556654
No 463
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.17 Score=46.81 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...+++|.|..|.|||||++.++-...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 678999999999999999999887543
No 464
>PRK13975 thymidylate kinase; Provisional
Probab=94.85 E-value=0.024 Score=52.10 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.6
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
..|+|.|+.|+||||+++.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998754
No 465
>PRK14527 adenylate kinase; Provisional
Probab=94.84 E-value=0.026 Score=51.79 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+|.|.|.+|+||||+|+.+++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 466
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.84 E-value=0.038 Score=46.42 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=27.1
Q ss_pred hHHHHhccCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 220 EIESLLAAAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 220 ~l~~~L~~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|.+.|....+|.+.|.=|.|||||++.+++.+
T Consensus 7 ~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 7 KLAQILKPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 444555578899999999999999999999865
No 467
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.84 E-value=0.075 Score=59.43 Aligned_cols=167 Identities=16% Similarity=0.146 Sum_probs=81.4
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHH-HhccCcceEEEEe---------------cccccCCCCcHHHHHHHHHHHHhcCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNK-ISRNFEGSCFLQN---------------VRKESQSPGGLARLQQKLLSEVLRDE 290 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~-~~~~f~~~~~~~~---------------~~~~~~~~~~~~~l~~~ll~~~~~~~ 290 (529)
+.+++.|+|+.+.||||+.+.+.-- +-. ..++++.. .+........+..+...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma--q~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~------ 397 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA--KSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTN------ 397 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH--HhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHH------
Confidence 4678999999999999999998653 111 11222211 11100001111111111110
Q ss_pred CCCCCHHHHHHHhCCCcEEEEEcCCC---CHHHHHH----HHhccCCCCCCcEEEEEeCcchhhhhcCCC-ccceEec--
Q 041923 291 NVIPDIEFNFTRLSRRKALIVLDDVT---CFRQIKF----LIRSLDWFMPESRIIITTRDQKVLKNGGVK-EKDIYEM-- 360 (529)
Q Consensus 291 ~~~~~~~~l~~~l~~~~~LLVlDdv~---~~~~l~~----l~~~~~~~~~gs~IliTtR~~~~~~~~~~~-~~~~~~l-- 360 (529)
...+...+ ..+-|++||... ++..-.. ++..+. ..|+.+|+||....+....... ......+
T Consensus 398 -----~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 398 -----IVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred -----HHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 11222222 467899999984 3333222 232222 2477899999986664432111 0011111
Q ss_pred --cCCCc-----CCCCCcccHHHHHHHHHHHhCCChHHHHHHHHHhcCCCHHHHHHHHHHH
Q 041923 361 --KALEC-----ENLPNEVGYQELSEKIINYAQGVPLALEILGCFLYGKGKEVWENAINEL 414 (529)
Q Consensus 361 --~~L~~-----~~~~~~~~~~~~~~~i~~~~~G~PLal~~~a~~L~~~~~~~~~~~l~~l 414 (529)
..+.. ...+. ...+-.|++.+ |+|-.+..-|..+...........+..+
T Consensus 470 d~~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l 525 (782)
T PRK00409 470 DEETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASL 525 (782)
T ss_pred ecCcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 11111 12222 34566666665 7777777777766554444455555444
No 468
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.82 E-value=0.018 Score=51.29 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.0
Q ss_pred EEEEecCcchHHHHHHHHHHHH
Q 041923 231 VGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
++|+|++|+||||+|+.+.+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 469
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.023 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.0
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
.|.|.|.+|+||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999983
No 470
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=94.79 E-value=0.027 Score=49.96 Aligned_cols=29 Identities=31% Similarity=0.443 Sum_probs=24.8
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccC
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNF 256 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f 256 (529)
.+.|.+.|+.|+||||+.+.+++.+.-.|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 35689999999999999999999876554
No 471
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.79 E-value=0.2 Score=47.42 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.6
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|.|..|.|||||.+.++...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 25 EGEFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999999998753
No 472
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.78 E-value=0.033 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=24.2
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....|+|+|++|+||||+++.++.++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 67899999999999999999999876
No 473
>PLN02924 thymidylate kinase
Probab=94.78 E-value=0.11 Score=48.69 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
....|+|.|..|+||||++..+++.+...
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35689999999999999999999988765
No 474
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.77 E-value=0.027 Score=50.73 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
...|+|.|+.|.|||||++.++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45799999999999999999998753
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.74 E-value=0.12 Score=55.18 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCC
Q 041923 218 VGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVI 293 (529)
Q Consensus 218 l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~ 293 (529)
+..|.+.|. ...++.|.|.+|+|||+|+.+++......-..++|+. ......-+..-+..++-+....
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis--------~e~~~~~i~~~~~~~g~~~~~~ 330 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA--------FEESRAQLIRNARSWGIDLEKM 330 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE--------ecCCHHHHHHHHHHcCCChHHH
Q ss_pred CC-------------------HHHHHHHhCC-CcEEEEEcCC----------CCHHHHHHHHhccCCCCCCcEEEEEe
Q 041923 294 PD-------------------IEFNFTRLSR-RKALIVLDDV----------TCFRQIKFLIRSLDWFMPESRIIITT 341 (529)
Q Consensus 294 ~~-------------------~~~l~~~l~~-~~~LLVlDdv----------~~~~~l~~l~~~~~~~~~gs~IliTt 341 (529)
.. ...+.+.+.. +.-++|+|.+ .-...+..+...+. ..|..+|+|.
T Consensus 331 ~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~~~~~~~~l~~l~~~~k--~~~~t~l~t~ 406 (509)
T PRK09302 331 EEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGSLNEFRQFVIRLTDYLK--SEEITGLFTN 406 (509)
T ss_pred hhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCCHHHHHHHHHHHHHHHH--hCCCeEEEEe
No 476
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.74 E-value=0.034 Score=58.83 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=37.2
Q ss_pred CcccccchhHHhHHHHhc-------cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 209 NHLVGVESKVGEIESLLA-------AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 209 ~~fvGR~~~l~~l~~~L~-------~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..++--.+.++++..||. ..+++.++|++|+||||.++.+++++.
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555678899999997 367999999999999999999999863
No 477
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.73 E-value=0.04 Score=43.72 Aligned_cols=25 Identities=32% Similarity=0.630 Sum_probs=22.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
++.+.|.+|+||||++..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998865
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.72 E-value=0.024 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.7
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
++++|.|++|+|||||++.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 689999999999999999998754
No 479
>PHA02774 E1; Provisional
Probab=94.71 E-value=0.19 Score=53.17 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=29.3
Q ss_pred hHHhHHHHhc---cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 217 KVGEIESLLA---AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 217 ~l~~l~~~L~---~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
-+..|..+|. ....+.|+|++|.|||.||..+++-+.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455666665 345899999999999999999998764
No 480
>PRK13764 ATPase; Provisional
Probab=94.71 E-value=0.16 Score=54.54 Aligned_cols=87 Identities=18% Similarity=0.076 Sum_probs=51.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCC
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTRLSRR 306 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~l~~~ 306 (529)
....|.|+|.+|+||||++..+++.+..+-..+..+.+..+... .... . +... ............|+.+
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~-~~~i----~----q~~~--~~~~~~~~~~~lLR~r 324 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQV-PPEI----T----QYSK--LEGSMEETADILLLVR 324 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccC-CCcc----e----EEee--ccccHHHHHHHHHhhC
Confidence 56789999999999999999999877643222223332222211 1000 0 0000 0001112223336777
Q ss_pred cEEEEEcCCCCHHHHHHH
Q 041923 307 KALIVLDDVTCFRQIKFL 324 (529)
Q Consensus 307 ~~LLVlDdv~~~~~l~~l 324 (529)
+=.+++|.+.+.+.++.+
T Consensus 325 PD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 325 PDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred CCEEEECCCCCHHHHHHH
Confidence 889999999998888765
No 481
>PRK08506 replicative DNA helicase; Provisional
Probab=94.71 E-value=0.34 Score=51.10 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=38.7
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEEecccccCCCCcHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQNVRKESQSPGGLARLQQKLLSEVL 287 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 287 (529)
...++.|-|.+|+|||+||..++.....+-..++|+. + ......+...++....
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fS-l------EMs~~ql~~Rlla~~s 244 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFS-L------EMPAEQLMLRMLSAKT 244 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEe-C------cCCHHHHHHHHHHHhc
Confidence 7889999999999999999999987754433344442 2 3456677777766543
No 482
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.70 E-value=0.028 Score=52.19 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
...+++|+|++|+|||||++.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999864
No 483
>PLN02200 adenylate kinase family protein
Probab=94.68 E-value=0.027 Score=53.38 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+|+|.|++|+||||+|+.++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998764
No 484
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.68 E-value=0.031 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHH
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
..+++|+|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999999999999999999876
No 485
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.68 E-value=0.038 Score=48.75 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
+++|+|..|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999988765
No 486
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.65 E-value=0.22 Score=50.55 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=29.3
Q ss_pred CEEEEEecCcchHHHHHHHHHHHH--hccCcceEEEE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKI--SRNFEGSCFLQ 263 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~--~~~f~~~~~~~ 263 (529)
.++.|.|.+|.|||.||..++.++ .......++++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999998 55556666664
No 487
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.65 E-value=0.038 Score=52.35 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
....+.|.|.+|+|||||+.+++.....+-..++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 5779999999999999999888887644434455554
No 488
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.65 E-value=0.028 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=17.9
Q ss_pred EEEEecCcchHHHHHHHHHHH
Q 041923 231 VGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~ 251 (529)
|+|+|.+|+|||||+..++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999976
No 489
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.63 E-value=0.21 Score=55.59 Aligned_cols=102 Identities=19% Similarity=0.114 Sum_probs=56.1
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCc-ceEEEEecccccCCCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHH---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFE-GSCFLQNVRKESQSPGGLARLQQKLLSEVLRDENVIPDIEFNFTR--- 302 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~~l~~~--- 302 (529)
..+++.|.|.+|.||||+++.+.+.+...-. ..+++..... . ....+....+.. ...+..+...
T Consensus 337 ~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg-----~----AA~~L~e~~g~~---a~Tih~lL~~~~~ 404 (720)
T TIGR01448 337 QHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTG-----R----AAKRLGEVTGLT---ASTIHRLLGYGPD 404 (720)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCch-----H----HHHHHHHhcCCc---cccHHHHhhccCC
Confidence 5679999999999999999999886654421 2344432111 1 111221111110 0011111110
Q ss_pred ------h--CCCcEEEEEcCCC--CHHHHHHHHhccCCCCCCcEEEEEeCc
Q 041923 303 ------L--SRRKALIVLDDVT--CFRQIKFLIRSLDWFMPESRIIITTRD 343 (529)
Q Consensus 303 ------l--~~~~~LLVlDdv~--~~~~l~~l~~~~~~~~~gs~IliTtR~ 343 (529)
. ....-+||+|.+. +......++..++ .++++|+.--.
T Consensus 405 ~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD~ 452 (720)
T TIGR01448 405 TFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVGDT 452 (720)
T ss_pred ccchhhhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEECcc
Confidence 0 1234599999995 5556667766553 67888876543
No 490
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.61 E-value=0.043 Score=54.24 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.3
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
..+++.|+|.+|+||||||.+++......-..++|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 6789999999999999999999987766545555653
No 491
>PRK06761 hypothetical protein; Provisional
Probab=94.60 E-value=0.041 Score=53.36 Aligned_cols=28 Identities=36% Similarity=0.529 Sum_probs=24.7
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhcc
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRN 255 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~ 255 (529)
.++|.|.|++|+||||+++.+++.+...
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 3689999999999999999999987654
No 492
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.59 E-value=0.046 Score=48.24 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 228 APLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 228 ~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
.++++|+|..|+|||||..++..+++.+.-.+..+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 478999999999999999999999887755455444
No 493
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.59 E-value=0.11 Score=50.51 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHh
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKIS 253 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~ 253 (529)
..+-+.++|++|+|||++++.+...+.
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCC
Confidence 888999999999999999999886543
No 494
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.58 E-value=0.062 Score=57.80 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=37.8
Q ss_pred CCcccccchhHHhHHHHhc----cCCEEEEEecCcchHHHHHHHHHHHHhc
Q 041923 208 KNHLVGVESKVGEIESLLA----AAPLVGIWGMGGIGKTTIARAVFNKISR 254 (529)
Q Consensus 208 ~~~fvGR~~~l~~l~~~L~----~~~~v~I~G~gGiGKTtLa~~~~~~~~~ 254 (529)
++..+.|.+..+.|.++.. ...+|.|+|++|+||||+|+.++..+..
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3456677777777777665 5669999999999999999999998764
No 495
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.58 E-value=0.15 Score=53.10 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=52.8
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhcc--C-cceEEEEecccccCCCCcHHHHHHHHHHHHhcCCC-----CCCC---
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRN--F-EGSCFLQNVRKESQSPGGLARLQQKLLSEVLRDEN-----VIPD--- 295 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~--f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~--- 295 (529)
....++|.|-.|+|||+|+..+++....+ + +.++.+..+++. ......+...++..-..... ..+.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGER---grEv~efi~~~~~~~~l~rtvvv~atsd~p~~ 216 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGIT---YEEANFFMKDFEETGALERAVVFLNLADDPAV 216 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEcccc---chHHHHHHHHHHhcCCcceEEEEEECCCCCHH
Confidence 67889999999999999999998865321 1 223444434332 34455666665533211111 0011
Q ss_pred --------HHHHHHHhC---CCcEEEEEcCCCC
Q 041923 296 --------IEFNFTRLS---RRKALIVLDDVTC 317 (529)
Q Consensus 296 --------~~~l~~~l~---~~~~LLVlDdv~~ 317 (529)
...+.++++ ++++||++||+..
T Consensus 217 ~R~~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 217 ERIVTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 233455554 6789999999953
No 496
>PRK04182 cytidylate kinase; Provisional
Probab=94.57 E-value=0.028 Score=50.74 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEecCcchHHHHHHHHHHHH
Q 041923 230 LVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 230 ~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
+|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 497
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.57 E-value=0.044 Score=53.46 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=26.8
Q ss_pred CEEEEEecCcchHHHHHHHHHHHHhccCcceEEEE
Q 041923 229 PLVGIWGMGGIGKTTIARAVFNKISRNFEGSCFLQ 263 (529)
Q Consensus 229 ~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~~~~~~ 263 (529)
+.|+|+|-||+||||++..++.-+...-. .+.+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~-~Vlli 34 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGK-KVMIV 34 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEE
Confidence 57899999999999999999998776533 34443
No 498
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.57 E-value=0.16 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.9
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHH
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKI 252 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~ 252 (529)
....++|+|..|.|||||++-+..-+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 88999999999999999999998755
No 499
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.57 E-value=0.044 Score=51.68 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.0
Q ss_pred cCCEEEEEecCcchHHHHHHHHHHHHhccCcc
Q 041923 227 AAPLVGIWGMGGIGKTTIARAVFNKISRNFEG 258 (529)
Q Consensus 227 ~~~~v~I~G~gGiGKTtLa~~~~~~~~~~f~~ 258 (529)
.+..|.+.||+|+||||+.+.+...+..++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 46688999999999999999999887766543
No 500
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.57 E-value=0.03 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=19.5
Q ss_pred EEEEecCcchHHHHHHHHHHH
Q 041923 231 VGIWGMGGIGKTTIARAVFNK 251 (529)
Q Consensus 231 v~I~G~gGiGKTtLa~~~~~~ 251 (529)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999974
Done!